Query 015919
Match_columns 398
No_of_seqs 394 out of 2401
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 04:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwy_A Light-independent proto 100.0 1.9E-34 6.6E-39 271.6 21.4 232 42-287 46-294 (314)
2 3ea0_A ATPase, para family; al 100.0 1.9E-35 6.5E-40 269.9 13.4 228 42-285 2-244 (245)
3 1g3q_A MIND ATPase, cell divis 100.0 1.7E-34 5.8E-39 262.4 19.1 229 43-286 1-236 (237)
4 3q9l_A Septum site-determining 100.0 1.8E-34 6E-39 265.9 15.1 231 43-286 1-249 (260)
5 1hyq_A MIND, cell division inh 100.0 7.5E-34 2.6E-38 262.3 14.7 228 43-286 1-235 (263)
6 1wcv_1 SOJ, segregation protei 100.0 4.5E-34 1.5E-38 263.1 12.9 232 42-289 4-248 (257)
7 2ph1_A Nucleotide-binding prot 100.0 8.9E-33 3E-37 255.1 20.7 230 34-265 8-244 (262)
8 3k9g_A PF-32 protein; ssgcid, 100.0 6.4E-33 2.2E-37 256.7 18.3 230 41-287 24-267 (267)
9 4dzz_A Plasmid partitioning pr 100.0 4.5E-33 1.6E-37 247.3 15.7 199 44-287 1-205 (206)
10 3end_A Light-independent proto 100.0 2.5E-32 8.4E-37 258.0 20.6 230 41-287 38-287 (307)
11 1cp2_A CP2, nitrogenase iron p 100.0 1.2E-32 4.1E-37 255.1 15.6 234 44-287 1-248 (269)
12 2afh_E Nitrogenase iron protei 100.0 2.2E-32 7.5E-37 256.1 16.0 230 44-286 2-250 (289)
13 3kjh_A CO dehydrogenase/acetyl 100.0 7.1E-32 2.4E-36 247.0 17.4 224 46-287 2-253 (254)
14 3pg5_A Uncharacterized protein 100.0 1.3E-31 4.3E-36 258.3 16.9 244 44-289 1-351 (361)
15 2oze_A ORF delta'; para, walke 100.0 3.3E-32 1.1E-36 256.0 11.8 243 38-291 28-294 (298)
16 3ez2_A Plasmid partition prote 100.0 3.2E-32 1.1E-36 266.3 10.4 244 40-292 104-397 (398)
17 3ez9_A Para; DNA binding, wing 100.0 9.3E-32 3.2E-36 263.4 12.1 244 40-292 107-400 (403)
18 3cwq_A Para family chromosome 100.0 3.9E-31 1.3E-35 235.7 12.9 198 45-292 1-204 (209)
19 2xj4_A MIPZ; replication, cell 100.0 2.7E-31 9.2E-36 248.3 2.8 223 43-284 3-265 (286)
20 3luu_A Uncharacterized protein 100.0 2.4E-29 8.3E-34 196.0 8.8 92 294-388 8-100 (101)
21 3la6_A Tyrosine-protein kinase 99.9 1.5E-25 5.2E-30 208.5 15.4 173 41-219 89-268 (286)
22 2l6n_A Uncharacterized protein 99.9 3.7E-26 1.3E-30 184.8 9.5 90 294-388 10-100 (132)
23 2l6p_A PHAC1, PHAC2 and PHAD g 99.9 8E-26 2.7E-30 181.5 9.7 89 294-388 4-93 (124)
24 3bfv_A CAPA1, CAPB2, membrane 99.9 2.9E-25 9.9E-30 205.3 12.3 171 42-218 80-257 (271)
25 3fkq_A NTRC-like two-domain pr 99.9 6.1E-26 2.1E-30 219.7 8.0 200 41-253 140-353 (373)
26 3cio_A ETK, tyrosine-protein k 99.9 2.3E-24 8E-29 202.1 12.4 171 42-218 102-279 (299)
27 3ug7_A Arsenical pump-driving 99.9 3.6E-23 1.2E-27 198.2 13.6 201 42-251 23-316 (349)
28 3zq6_A Putative arsenical pump 99.9 4.9E-24 1.7E-28 202.4 6.6 207 43-251 12-301 (324)
29 2woj_A ATPase GET3; tail-ancho 99.9 5.7E-24 1.9E-28 203.8 6.5 175 41-216 14-275 (354)
30 3o2g_A Gamma-butyrobetaine dio 99.9 6.4E-23 2.2E-27 198.7 7.7 89 297-387 8-96 (388)
31 3iqw_A Tail-anchored protein t 99.9 5.2E-22 1.8E-26 188.2 11.5 202 40-249 11-302 (334)
32 1byi_A Dethiobiotin synthase; 99.9 6.8E-22 2.3E-26 177.6 10.7 197 45-252 2-208 (224)
33 2woo_A ATPase GET3; tail-ancho 99.9 6.4E-22 2.2E-26 188.0 9.6 206 42-250 16-300 (329)
34 3io3_A DEHA2D07832P; chaperone 99.8 9.2E-22 3.2E-26 187.4 7.7 206 40-250 13-312 (348)
35 3igf_A ALL4481 protein; two-do 99.8 4.1E-19 1.4E-23 170.3 14.9 276 45-374 2-370 (374)
36 1ihu_A Arsenical pump-driving 99.8 2.2E-19 7.6E-24 183.8 5.2 209 38-251 320-569 (589)
37 1ihu_A Arsenical pump-driving 99.8 6.7E-19 2.3E-23 180.3 7.7 165 45-218 8-240 (589)
38 2xxa_A Signal recognition part 99.7 5.6E-16 1.9E-20 151.7 13.9 167 42-244 98-271 (433)
39 1j8m_F SRP54, signal recogniti 99.6 5.7E-15 2E-19 137.7 11.7 166 44-245 98-271 (297)
40 1ls1_A Signal recognition part 99.5 3.7E-14 1.3E-18 132.2 12.5 167 43-245 97-269 (295)
41 3of5_A Dethiobiotin synthetase 99.5 1.2E-14 4.2E-19 130.4 8.5 196 42-248 2-206 (228)
42 1zu4_A FTSY; GTPase, signal re 99.5 9.5E-14 3.2E-18 130.8 14.7 171 43-245 104-286 (320)
43 2ffh_A Protein (FFH); SRP54, s 99.5 2E-13 7E-18 132.6 12.7 167 43-245 97-269 (425)
44 1yrb_A ATP(GTP)binding protein 99.5 2E-14 6.8E-19 131.7 5.0 46 43-89 12-57 (262)
45 3fgn_A Dethiobiotin synthetase 99.4 2.1E-12 7.1E-17 117.1 12.3 195 41-251 23-225 (251)
46 3qxc_A Dethiobiotin synthetase 99.4 1.7E-12 5.9E-17 117.0 11.2 177 36-218 13-202 (242)
47 2v3c_C SRP54, signal recogniti 99.4 7.3E-12 2.5E-16 122.5 15.8 166 43-245 98-270 (432)
48 3dm5_A SRP54, signal recogniti 99.3 7.1E-12 2.4E-16 122.0 13.8 167 43-245 99-271 (443)
49 2j37_W Signal recognition part 99.3 7.3E-12 2.5E-16 124.3 13.0 167 42-244 99-271 (504)
50 3kl4_A SRP54, signal recogniti 99.2 4.9E-11 1.7E-15 116.1 11.7 167 43-245 96-270 (433)
51 1vma_A Cell division protein F 99.2 2.4E-10 8.1E-15 106.7 15.5 169 42-246 102-282 (306)
52 2px0_A Flagellar biosynthesis 99.1 5.1E-10 1.7E-14 104.2 11.8 161 43-245 104-271 (296)
53 3p32_A Probable GTPase RV1496/ 99.0 1.8E-09 6.2E-14 103.2 9.8 152 42-217 77-229 (355)
54 2r8r_A Sensor protein; KDPD, P 98.9 1.1E-09 3.7E-14 96.7 6.8 47 43-89 4-50 (228)
55 2p67_A LAO/AO transport system 98.5 1E-06 3.5E-11 83.6 13.4 127 42-187 54-181 (341)
56 4a0g_A Adenosylmethionine-8-am 98.2 5.8E-06 2E-10 87.3 10.8 88 151-251 201-298 (831)
57 2yhs_A FTSY, cell division pro 98.2 3.1E-05 1.1E-09 76.1 14.8 167 43-245 292-470 (503)
58 3e70_C DPA, signal recognition 98.1 2.7E-05 9.3E-10 73.1 13.2 169 42-246 127-301 (328)
59 2obn_A Hypothetical protein; s 98.0 5.3E-05 1.8E-09 71.1 12.6 166 44-249 152-337 (349)
60 2rdo_7 EF-G, elongation factor 97.8 0.0001 3.6E-09 76.3 11.8 93 150-249 80-173 (704)
61 1rj9_A FTSY, signal recognitio 97.8 0.00067 2.3E-08 62.9 15.4 42 43-85 101-142 (304)
62 3pzx_A Formate--tetrahydrofola 97.7 3.6E-05 1.2E-09 74.2 5.6 51 42-95 55-108 (557)
63 1xjc_A MOBB protein homolog; s 97.7 6.1E-05 2.1E-09 63.5 6.2 43 42-85 2-44 (169)
64 2h5e_A Peptide chain release f 97.6 0.00028 9.5E-09 70.6 10.1 88 150-244 80-167 (529)
65 1g5t_A COB(I)alamin adenosyltr 97.5 0.0003 1E-08 60.5 8.6 40 42-83 27-66 (196)
66 3luu_A Uncharacterized protein 97.4 5.5E-05 1.9E-09 58.1 2.6 36 353-388 7-43 (101)
67 2www_A Methylmalonic aciduria 97.3 0.0031 1E-07 59.6 13.6 44 43-87 73-116 (349)
68 3con_A GTPase NRAS; structural 97.1 0.0094 3.2E-07 50.3 13.5 87 150-242 67-158 (190)
69 1xp8_A RECA protein, recombina 97.0 0.0011 3.7E-08 63.1 7.3 40 44-84 74-113 (366)
70 2c78_A Elongation factor TU-A; 97.0 0.0053 1.8E-07 59.2 12.0 69 150-218 73-141 (405)
71 2gf9_A RAS-related protein RAB 96.9 0.018 6.1E-07 48.6 13.4 88 150-241 69-159 (189)
72 1dar_A EF-G, elongation factor 96.8 0.0038 1.3E-07 64.5 10.0 86 150-242 75-160 (691)
73 3vqt_A RF-3, peptide chain rel 96.8 0.0012 4E-08 66.4 5.5 89 149-244 97-185 (548)
74 2yvu_A Probable adenylyl-sulfa 96.7 0.0019 6.3E-08 55.0 5.8 40 43-83 12-51 (186)
75 2ce2_X GTPase HRAS; signaling 96.7 0.018 6E-07 46.9 11.8 87 150-242 49-140 (166)
76 3tr5_A RF-3, peptide chain rel 96.7 0.00095 3.2E-08 66.7 4.2 86 150-242 80-165 (528)
77 2elf_A Protein translation elo 96.7 0.0073 2.5E-07 57.5 10.0 67 150-217 58-125 (370)
78 2qm8_A GTPase/ATPase; G protei 96.7 0.012 4.2E-07 55.1 11.3 43 42-85 53-95 (337)
79 1u94_A RECA protein, recombina 96.7 0.0019 6.5E-08 61.2 5.7 39 44-83 63-101 (356)
80 3t1o_A Gliding protein MGLA; G 96.7 0.039 1.3E-06 46.5 13.7 69 150-218 72-148 (198)
81 2xex_A Elongation factor G; GT 96.6 0.0087 3E-07 61.8 11.0 86 150-242 73-158 (693)
82 1np6_A Molybdopterin-guanine d 96.6 0.004 1.4E-07 52.6 6.6 43 42-85 4-46 (174)
83 3clv_A RAB5 protein, putative; 96.5 0.15 5.2E-06 42.8 16.7 65 152-216 93-158 (208)
84 3dz8_A RAS-related protein RAB 96.5 0.018 6.1E-07 48.8 10.6 88 150-241 70-160 (191)
85 3iev_A GTP-binding protein ERA 96.5 0.01 3.5E-07 55.0 9.6 85 151-240 58-153 (308)
86 3bc1_A RAS-related protein RAB 96.5 0.096 3.3E-06 43.8 15.2 86 151-241 69-159 (195)
87 1d2e_A Elongation factor TU (E 96.5 0.0091 3.1E-07 57.4 9.5 69 150-218 64-132 (397)
88 2efe_B Small GTP-binding prote 96.5 0.049 1.7E-06 45.2 12.9 67 151-217 60-129 (181)
89 3oes_A GTPase rhebl1; small GT 96.5 0.11 3.7E-06 44.2 15.2 68 150-218 70-142 (201)
90 2h57_A ADP-ribosylation factor 96.4 0.053 1.8E-06 45.7 13.0 68 150-218 65-139 (190)
91 2hxs_A RAB-26, RAS-related pro 96.4 0.072 2.5E-06 44.0 13.3 87 151-241 55-147 (178)
92 2b8t_A Thymidine kinase; deoxy 96.3 0.014 4.8E-07 51.3 8.9 35 44-79 12-46 (223)
93 1upt_A ARL1, ADP-ribosylation 96.3 0.15 5E-06 41.7 15.0 68 150-217 49-120 (171)
94 1z2a_A RAS-related protein RAB 96.3 0.02 6.8E-07 46.9 9.5 86 151-241 53-141 (168)
95 2a9k_A RAS-related protein RAL 96.3 0.032 1.1E-06 46.6 10.8 68 150-218 64-136 (187)
96 1kao_A RAP2A; GTP-binding prot 96.3 0.22 7.4E-06 40.3 15.8 66 151-217 50-120 (167)
97 2wsm_A Hydrogenase expression/ 96.3 0.0041 1.4E-07 54.2 5.3 40 43-84 29-68 (221)
98 2lkc_A Translation initiation 96.3 0.11 3.9E-06 42.8 14.1 66 151-217 54-119 (178)
99 2g0t_A Conserved hypothetical 96.2 0.026 8.8E-07 53.0 10.6 137 44-214 169-323 (350)
100 3iby_A Ferrous iron transport 96.2 0.038 1.3E-06 49.6 11.5 89 150-246 46-146 (256)
101 2nzj_A GTP-binding protein REM 96.2 0.072 2.4E-06 43.8 12.5 67 151-218 51-124 (175)
102 2l6n_A Uncharacterized protein 96.2 0.0029 9.8E-08 50.7 3.4 36 353-388 9-45 (132)
103 3tkl_A RAS-related protein RAB 96.2 0.12 4.2E-06 43.4 14.2 88 151-242 64-154 (196)
104 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0052 1.8E-07 55.4 5.5 39 44-83 4-42 (260)
105 1rz3_A Hypothetical protein rb 96.2 0.0062 2.1E-07 52.5 5.7 43 42-85 20-62 (201)
106 2g6b_A RAS-related protein RAB 96.2 0.085 2.9E-06 43.7 12.7 87 151-241 59-148 (180)
107 1zbd_A Rabphilin-3A; G protein 96.2 0.14 4.6E-06 43.5 14.2 87 151-241 56-145 (203)
108 1z0j_A RAB-22, RAS-related pro 96.1 0.046 1.6E-06 44.7 10.8 69 150-218 53-124 (170)
109 2fg5_A RAB-22B, RAS-related pr 96.1 0.045 1.5E-06 46.3 10.9 69 150-218 70-141 (192)
110 2bcg_Y Protein YP2, GTP-bindin 96.1 0.072 2.4E-06 45.5 12.3 68 151-218 56-126 (206)
111 3t5g_A GTP-binding protein RHE 96.1 0.14 4.9E-06 42.4 13.9 86 151-241 53-143 (181)
112 1r8s_A ADP-ribosylation factor 96.1 0.32 1.1E-05 39.3 15.7 68 150-217 42-113 (164)
113 2hf9_A Probable hydrogenase ni 96.1 0.0012 4.2E-08 57.9 0.7 40 43-84 37-76 (226)
114 1z08_A RAS-related protein RAB 96.1 0.063 2.2E-06 43.9 11.3 88 150-241 53-143 (170)
115 4bas_A ADP-ribosylation factor 96.1 0.12 4E-06 43.6 13.3 68 150-218 61-140 (199)
116 3b9q_A Chloroplast SRP recepto 96.0 0.0096 3.3E-07 55.0 6.4 42 43-85 99-140 (302)
117 1g16_A RAS-related protein SEC 96.0 0.066 2.3E-06 43.7 11.0 87 150-241 50-139 (170)
118 2bme_A RAB4A, RAS-related prot 96.0 0.088 3E-06 43.9 11.9 68 151-218 58-128 (186)
119 2bov_A RAla, RAS-related prote 96.0 0.096 3.3E-06 44.5 12.3 67 151-218 61-132 (206)
120 2a5j_A RAS-related protein RAB 95.9 0.16 5.5E-06 42.6 13.5 67 151-217 69-138 (191)
121 1z0f_A RAB14, member RAS oncog 95.9 0.074 2.5E-06 43.9 11.1 68 150-217 62-132 (179)
122 1r2q_A RAS-related protein RAB 95.9 0.059 2E-06 44.0 10.2 69 150-218 53-124 (170)
123 1ky3_A GTP-binding protein YPT 95.9 0.16 5.5E-06 41.9 13.1 67 150-217 56-130 (182)
124 2erx_A GTP-binding protein DI- 95.9 0.056 1.9E-06 44.3 10.0 68 150-218 49-122 (172)
125 1wf3_A GTP-binding protein; GT 95.8 0.054 1.8E-06 49.9 10.7 68 150-218 53-130 (301)
126 2cvh_A DNA repair and recombin 95.8 0.01 3.5E-07 51.5 5.5 37 44-84 20-56 (220)
127 2f1r_A Molybdopterin-guanine d 95.8 0.0082 2.8E-07 50.5 4.6 41 43-84 1-41 (171)
128 2og2_A Putative signal recogni 95.8 0.013 4.5E-07 55.4 6.4 42 43-85 156-197 (359)
129 2b6h_A ADP-ribosylation factor 95.7 0.28 9.4E-06 41.4 13.9 82 150-240 71-156 (192)
130 1nks_A Adenylate kinase; therm 95.7 0.011 3.8E-07 50.0 4.9 38 44-82 1-38 (194)
131 3cph_A RAS-related protein SEC 95.6 0.14 4.7E-06 43.7 12.1 87 151-242 68-157 (213)
132 1fzq_A ADP-ribosylation factor 95.6 0.23 7.8E-06 41.4 13.2 68 150-218 58-130 (181)
133 3lvq_E ARF-GAP with SH3 domain 95.6 0.17 5.8E-06 49.9 14.1 124 150-296 364-491 (497)
134 2zr9_A Protein RECA, recombina 95.6 0.013 4.4E-07 55.3 5.6 39 44-83 61-99 (349)
135 1ek0_A Protein (GTP-binding pr 95.6 0.11 3.7E-06 42.3 10.9 68 151-218 51-121 (170)
136 2oil_A CATX-8, RAS-related pro 95.6 0.39 1.3E-05 40.2 14.6 69 150-218 72-143 (193)
137 2dyk_A GTP-binding protein; GT 95.6 0.087 3E-06 42.6 10.1 66 151-217 48-120 (161)
138 2dr3_A UPF0273 protein PH0284; 95.5 0.013 4.6E-07 51.7 5.2 40 44-84 23-62 (247)
139 3lxx_A GTPase IMAP family memb 95.5 0.25 8.6E-06 43.3 13.6 21 45-66 30-50 (239)
140 1ksh_A ARF-like protein 2; sma 95.5 0.47 1.6E-05 39.3 14.7 68 150-217 60-131 (186)
141 2atv_A RERG, RAS-like estrogen 95.5 0.11 3.9E-06 43.8 10.8 67 150-218 74-145 (196)
142 2o52_A RAS-related protein RAB 95.4 0.11 3.9E-06 44.1 10.7 68 151-218 73-143 (200)
143 1u8z_A RAS-related protein RAL 95.4 0.089 3E-06 42.7 9.7 68 150-218 50-122 (168)
144 2gco_A H9, RHO-related GTP-bin 95.4 0.26 8.9E-06 41.8 12.9 67 151-218 72-142 (201)
145 3p26_A Elongation factor 1 alp 95.4 0.08 2.7E-06 52.2 10.7 69 150-218 109-184 (483)
146 1a7j_A Phosphoribulokinase; tr 95.4 0.0082 2.8E-07 55.1 3.3 42 43-85 4-45 (290)
147 3bh0_A DNAB-like replicative h 95.4 0.017 5.7E-07 53.7 5.4 39 44-83 68-106 (315)
148 3i8s_A Ferrous iron transport 95.3 0.12 4E-06 46.8 10.9 89 150-246 48-148 (274)
149 1uj2_A Uridine-cytidine kinase 95.3 0.014 4.7E-07 52.3 4.5 42 43-85 21-67 (252)
150 4dsu_A GTPase KRAS, isoform 2B 95.3 0.66 2.3E-05 38.3 15.0 86 151-242 51-141 (189)
151 2dy1_A Elongation factor G; tr 95.3 0.043 1.5E-06 56.4 8.7 83 150-240 72-154 (665)
152 1zd9_A ADP-ribosylation factor 95.3 0.13 4.4E-06 43.2 10.4 68 150-218 65-137 (188)
153 1m2o_B GTP-binding protein SAR 95.3 0.19 6.4E-06 42.4 11.5 82 150-241 65-151 (190)
154 1zj6_A ADP-ribosylation factor 95.3 0.28 9.6E-06 40.9 12.6 68 150-217 58-129 (187)
155 3j2k_7 ERF3, eukaryotic polype 95.3 0.12 4.1E-06 50.2 11.5 68 150-217 93-167 (439)
156 2ywe_A GTP-binding protein LEP 95.3 0.085 2.9E-06 53.3 10.6 68 150-218 71-138 (600)
157 2fn4_A P23, RAS-related protei 95.2 0.14 4.9E-06 42.2 10.5 67 151-218 56-127 (181)
158 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.021 7.2E-07 49.8 5.4 39 44-83 23-61 (235)
159 4dcu_A GTP-binding protein ENG 95.2 0.021 7.3E-07 55.9 5.9 67 150-217 69-143 (456)
160 2p5s_A RAS and EF-hand domain 95.2 0.16 5.6E-06 43.0 11.0 67 150-217 75-145 (199)
161 1x3s_A RAS-related protein RAB 95.2 0.13 4.5E-06 43.1 10.2 68 150-217 62-133 (195)
162 3tw8_B RAS-related protein RAB 95.1 0.082 2.8E-06 43.7 8.6 88 151-242 57-146 (181)
163 2ew1_A RAS-related protein RAB 95.1 0.2 6.9E-06 42.8 11.2 68 151-218 74-144 (201)
164 2w58_A DNAI, primosome compone 95.1 0.027 9.3E-07 48.2 5.5 37 45-82 55-91 (202)
165 4fn5_A EF-G 1, elongation fact 95.1 0.25 8.6E-06 51.1 13.7 88 150-244 83-170 (709)
166 3pqc_A Probable GTP-binding pr 95.1 0.099 3.4E-06 43.8 9.0 41 176-217 105-145 (195)
167 2x77_A ADP-ribosylation factor 95.0 0.3 1E-05 40.8 11.9 68 150-217 64-135 (189)
168 3cpj_B GTP-binding protein YPT 95.0 0.28 9.5E-06 42.4 12.0 68 151-218 61-131 (223)
169 2h17_A ADP-ribosylation factor 95.0 0.18 6.1E-06 41.9 10.3 68 150-217 63-134 (181)
170 2pez_A Bifunctional 3'-phospho 94.9 0.035 1.2E-06 46.5 5.8 40 43-83 4-43 (179)
171 3bgw_A DNAB-like replicative h 94.9 0.02 6.7E-07 55.9 4.7 40 44-84 197-236 (444)
172 1z06_A RAS-related protein RAB 94.9 0.32 1.1E-05 40.6 11.9 86 151-241 68-159 (189)
173 3sjy_A Translation initiation 94.9 0.091 3.1E-06 50.4 9.3 66 152-217 75-141 (403)
174 1xx6_A Thymidine kinase; NESG, 94.9 0.042 1.4E-06 47.0 6.2 37 43-80 7-43 (191)
175 3uie_A Adenylyl-sulfate kinase 94.9 0.038 1.3E-06 47.4 5.9 41 42-83 23-63 (200)
176 2j9r_A Thymidine kinase; TK1, 94.9 0.067 2.3E-06 46.4 7.4 37 43-80 27-63 (214)
177 3o47_A ADP-ribosylation factor 94.9 0.27 9.1E-06 45.7 12.2 83 150-241 207-293 (329)
178 3ec2_A DNA replication protein 94.9 0.019 6.7E-07 48.2 3.9 37 44-81 38-75 (180)
179 4a1f_A DNAB helicase, replicat 94.8 0.026 9E-07 52.8 5.1 39 44-83 46-84 (338)
180 3kkq_A RAS-related protein M-R 94.8 0.17 5.9E-06 41.9 9.8 87 151-242 65-156 (183)
181 2fv8_A H6, RHO-related GTP-bin 94.8 0.17 5.8E-06 43.2 9.9 66 151-217 72-141 (207)
182 3hr8_A Protein RECA; alpha and 94.8 0.042 1.4E-06 51.8 6.3 40 44-84 61-100 (356)
183 1moz_A ARL1, ADP-ribosylation 94.7 0.37 1.3E-05 39.8 11.7 68 150-217 60-131 (183)
184 1vco_A CTP synthetase; tetrame 94.7 0.046 1.6E-06 54.4 6.7 48 42-89 10-58 (550)
185 2xtp_A GTPase IMAP family memb 94.7 0.06 2E-06 48.1 7.0 22 44-66 22-43 (260)
186 2y8e_A RAB-protein 6, GH09086P 94.7 0.17 5.8E-06 41.6 9.4 68 151-218 62-132 (179)
187 3j25_A Tetracycline resistance 94.7 0.025 8.7E-07 57.8 5.0 88 149-243 64-151 (638)
188 2hup_A RAS-related protein RAB 94.7 0.42 1.4E-05 40.5 12.1 68 151-218 77-147 (201)
189 2gf0_A GTP-binding protein DI- 94.6 0.17 5.7E-06 42.6 9.4 68 150-218 54-127 (199)
190 4dkx_A RAS-related protein RAB 94.6 0.49 1.7E-05 41.0 12.5 89 150-242 60-151 (216)
191 3ihw_A Centg3; RAS, centaurin, 94.6 0.65 2.2E-05 38.7 13.0 82 151-240 66-152 (184)
192 1m7g_A Adenylylsulfate kinase; 94.6 0.033 1.1E-06 48.2 4.8 41 42-83 23-64 (211)
193 3q85_A GTP-binding protein REM 94.6 0.32 1.1E-05 39.6 10.7 87 150-241 49-141 (169)
194 3t61_A Gluconokinase; PSI-biol 94.5 0.025 8.5E-07 48.5 3.8 39 39-83 13-51 (202)
195 2il1_A RAB12; G-protein, GDP, 94.5 0.19 6.4E-06 42.4 9.3 68 151-218 74-144 (192)
196 1f6b_A SAR1; gtpases, N-termin 94.5 0.22 7.6E-06 42.2 9.8 67 150-217 67-138 (198)
197 3k53_A Ferrous iron transport 94.5 0.11 3.7E-06 46.9 8.1 89 150-246 48-145 (271)
198 2gks_A Bifunctional SAT/APS ki 94.4 0.04 1.4E-06 55.1 5.5 40 43-83 371-410 (546)
199 3c5c_A RAS-like protein 12; GD 94.4 0.45 1.5E-05 39.8 11.5 86 150-241 67-159 (187)
200 1kht_A Adenylate kinase; phosp 94.4 0.03 1E-06 47.2 4.0 38 44-82 3-40 (192)
201 3a1s_A Iron(II) transport prot 94.3 0.31 1.1E-05 43.5 10.9 88 150-245 50-145 (258)
202 4dhe_A Probable GTP-binding pr 94.3 0.17 5.8E-06 43.6 8.8 67 150-217 77-156 (223)
203 2j69_A Bacterial dynamin-like 94.3 0.12 4.2E-06 53.3 8.9 63 152-217 174-242 (695)
204 1cr0_A DNA primase/helicase; R 94.2 0.057 2E-06 49.3 5.8 39 44-83 35-74 (296)
205 3cb4_D GTP-binding protein LEP 94.2 0.11 3.7E-06 52.6 8.1 85 150-241 69-153 (599)
206 1vg8_A RAS-related protein RAB 94.2 0.17 5.8E-06 42.9 8.4 68 150-218 55-130 (207)
207 3lxw_A GTPase IMAP family memb 94.2 0.34 1.1E-05 43.0 10.6 67 150-217 68-151 (247)
208 2ged_A SR-beta, signal recogni 94.1 0.19 6.7E-06 42.1 8.6 67 151-218 90-169 (193)
209 1qhx_A CPT, protein (chloramph 94.1 0.037 1.3E-06 46.2 3.9 36 44-83 3-38 (178)
210 3cbq_A GTP-binding protein REM 94.0 0.35 1.2E-05 40.9 10.1 67 151-218 71-143 (195)
211 1e6c_A Shikimate kinase; phosp 94.0 0.037 1.3E-06 45.9 3.7 35 43-83 1-35 (173)
212 1ega_A Protein (GTP-binding pr 94.0 0.23 7.8E-06 45.6 9.3 67 150-218 54-129 (301)
213 2q6t_A DNAB replication FORK h 93.9 0.054 1.9E-06 52.8 5.2 39 44-83 200-239 (444)
214 2l6p_A PHAC1, PHAC2 and PHAD g 93.9 0.017 5.8E-07 45.7 1.3 33 355-388 5-38 (124)
215 2hjg_A GTP-binding protein ENG 93.9 0.068 2.3E-06 51.9 5.9 67 150-217 49-123 (436)
216 1s1m_A CTP synthase; CTP synth 93.9 0.086 3E-06 52.4 6.6 46 44-89 3-49 (545)
217 1q57_A DNA primase/helicase; d 93.9 0.037 1.3E-06 54.8 4.0 40 44-84 242-282 (503)
218 3llu_A RAS-related GTP-binding 93.8 0.85 2.9E-05 38.3 12.1 68 150-217 67-141 (196)
219 3bos_A Putative DNA replicatio 93.8 0.087 3E-06 45.9 5.9 39 44-83 52-90 (242)
220 3q3j_B RHO-related GTP-binding 93.8 0.88 3E-05 39.0 12.3 69 150-218 73-144 (214)
221 2pbr_A DTMP kinase, thymidylat 93.7 0.094 3.2E-06 44.2 5.8 34 46-80 2-35 (195)
222 2zts_A Putative uncharacterize 93.7 0.067 2.3E-06 47.1 5.0 39 44-83 30-69 (251)
223 2r6a_A DNAB helicase, replicat 93.7 0.072 2.4E-06 52.0 5.7 39 44-83 203-242 (454)
224 1c1y_A RAS-related protein RAP 93.6 0.86 2.9E-05 36.7 11.5 67 150-217 49-120 (167)
225 1mky_A Probable GTP-binding pr 93.6 0.29 9.8E-06 47.5 9.7 65 150-216 47-121 (439)
226 3mca_A HBS1, elongation factor 93.5 0.026 9E-07 57.1 2.2 69 150-218 253-328 (592)
227 2kjq_A DNAA-related protein; s 93.5 0.067 2.3E-06 43.6 4.3 40 43-83 35-74 (149)
228 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.58 2E-05 38.3 10.3 67 151-218 55-129 (177)
229 2z0h_A DTMP kinase, thymidylat 93.5 0.11 3.8E-06 43.9 5.8 35 46-81 2-36 (197)
230 1via_A Shikimate kinase; struc 93.5 0.049 1.7E-06 45.4 3.5 35 43-83 3-37 (175)
231 3tqc_A Pantothenate kinase; bi 93.4 0.096 3.3E-06 48.6 5.7 43 41-84 89-133 (321)
232 1kk1_A EIF2gamma; initiation o 93.4 0.2 6.8E-06 48.1 8.2 66 152-217 83-149 (410)
233 3trf_A Shikimate kinase, SK; a 93.3 0.054 1.8E-06 45.5 3.6 35 43-83 4-38 (185)
234 1g7s_A Translation initiation 93.3 0.78 2.7E-05 46.2 12.6 67 151-218 69-135 (594)
235 3c8u_A Fructokinase; YP_612366 93.3 0.12 4.2E-06 44.4 5.9 42 42-84 20-61 (208)
236 2g3y_A GTP-binding protein GEM 93.1 1.3 4.4E-05 38.1 12.2 67 151-218 86-158 (211)
237 3d3q_A TRNA delta(2)-isopenten 93.0 0.085 2.9E-06 49.3 4.7 36 43-84 6-41 (340)
238 1nn5_A Similar to deoxythymidy 93.0 0.13 4.5E-06 44.1 5.7 35 44-79 9-43 (215)
239 1zo1_I IF2, translation initia 93.0 0.19 6.6E-06 49.5 7.4 67 151-218 50-116 (501)
240 1nrj_B SR-beta, signal recogni 92.9 0.14 4.8E-06 44.0 5.8 23 44-67 12-34 (218)
241 3avx_A Elongation factor TS, e 92.9 0.29 9.9E-06 53.0 8.9 69 150-218 357-425 (1289)
242 1nlf_A Regulatory protein REPA 92.8 0.12 4E-06 46.8 5.3 39 44-83 30-78 (279)
243 2orw_A Thymidine kinase; TMTK, 92.8 0.1 3.4E-06 44.2 4.5 36 44-80 3-38 (184)
244 2iyv_A Shikimate kinase, SK; t 92.8 0.046 1.6E-06 46.0 2.3 35 43-83 1-35 (184)
245 3gj0_A GTP-binding nuclear pro 92.7 0.38 1.3E-05 41.4 8.3 68 150-218 62-132 (221)
246 1jbk_A CLPB protein; beta barr 92.7 0.1 3.5E-06 43.5 4.4 37 44-81 43-86 (195)
247 1ly1_A Polynucleotide kinase; 92.7 0.12 4.1E-06 42.9 4.8 36 43-83 1-36 (181)
248 1x6v_B Bifunctional 3'-phospho 92.6 0.12 4.1E-06 52.4 5.5 40 43-83 51-90 (630)
249 1odf_A YGR205W, hypothetical 3 92.6 0.087 3E-06 48.2 4.1 42 42-84 29-73 (290)
250 1sq5_A Pantothenate kinase; P- 92.6 0.13 4.3E-06 47.5 5.2 43 42-85 78-122 (308)
251 2qgz_A Helicase loader, putati 92.6 0.15 5.2E-06 47.0 5.7 38 44-82 152-190 (308)
252 1v5w_A DMC1, meiotic recombina 92.5 0.12 4.1E-06 48.4 5.0 40 44-84 122-167 (343)
253 3hjn_A DTMP kinase, thymidylat 92.5 0.099 3.4E-06 44.8 4.1 34 47-81 3-36 (197)
254 3crm_A TRNA delta(2)-isopenten 92.5 0.14 4.7E-06 47.5 5.2 37 42-84 3-39 (323)
255 1wb1_A Translation elongation 92.5 0.24 8.3E-06 48.7 7.4 67 150-217 71-137 (482)
256 1n0u_A EF-2, elongation factor 92.4 0.27 9.3E-06 51.8 8.0 67 150-217 96-162 (842)
257 2z43_A DNA repair and recombin 92.4 0.08 2.7E-06 49.2 3.6 40 44-84 107-152 (324)
258 1n0w_A DNA repair protein RAD5 92.4 0.12 4E-06 45.3 4.6 39 44-83 24-68 (243)
259 1m8p_A Sulfate adenylyltransfe 92.4 0.13 4.3E-06 51.8 5.2 41 42-83 394-435 (573)
260 4gzl_A RAS-related C3 botulinu 92.4 0.3 1E-05 41.6 7.0 68 150-218 76-147 (204)
261 2wwf_A Thymidilate kinase, put 92.4 0.19 6.3E-06 43.1 5.7 37 43-80 9-45 (212)
262 2atx_A Small GTP binding prote 92.3 0.59 2E-05 39.1 8.8 68 150-218 64-135 (194)
263 1m7b_A RND3/RHOE small GTP-bin 92.3 0.95 3.2E-05 37.5 10.0 69 150-218 53-124 (184)
264 3dpu_A RAB family protein; roc 92.3 0.35 1.2E-05 48.2 8.4 66 150-218 96-163 (535)
265 1kag_A SKI, shikimate kinase I 92.2 0.085 2.9E-06 43.7 3.2 35 43-83 3-37 (173)
266 4hlc_A DTMP kinase, thymidylat 92.1 0.17 5.7E-06 43.7 5.0 36 43-80 1-36 (205)
267 2r2a_A Uncharacterized protein 92.0 0.11 3.9E-06 44.5 3.9 40 42-82 3-48 (199)
268 1jjv_A Dephospho-COA kinase; P 92.0 0.12 4.1E-06 44.2 4.1 34 43-83 1-34 (206)
269 2if2_A Dephospho-COA kinase; a 92.0 0.084 2.9E-06 45.1 3.0 33 44-83 1-33 (204)
270 2ze6_A Isopentenyl transferase 91.8 0.14 4.8E-06 45.7 4.4 34 44-83 1-34 (253)
271 2ehv_A Hypothetical protein PH 91.8 0.24 8.3E-06 43.5 5.9 40 43-83 29-69 (251)
272 2plr_A DTMP kinase, probable t 91.8 0.2 6.8E-06 42.7 5.2 35 44-80 4-38 (213)
273 1uf9_A TT1252 protein; P-loop, 91.7 0.087 3E-06 44.8 2.8 37 40-83 4-40 (203)
274 3vaa_A Shikimate kinase, SK; s 91.7 0.12 4.3E-06 44.0 3.8 34 44-83 25-58 (199)
275 2v54_A DTMP kinase, thymidylat 91.7 0.14 4.9E-06 43.5 4.1 34 44-80 4-37 (204)
276 2p65_A Hypothetical protein PF 91.6 0.11 3.8E-06 43.1 3.3 27 44-71 43-69 (187)
277 1gwn_A RHO-related GTP-binding 91.6 1.1 3.9E-05 38.0 9.9 69 150-218 74-145 (205)
278 1qf9_A UMP/CMP kinase, protein 91.6 0.14 4.7E-06 43.0 4.0 35 42-82 4-38 (194)
279 3asz_A Uridine kinase; cytidin 91.6 0.17 5.9E-06 43.3 4.6 39 43-85 5-43 (211)
280 2qpt_A EH domain-containing pr 91.6 0.28 9.4E-06 49.1 6.7 65 153-218 155-231 (550)
281 3izy_P Translation initiation 91.6 0.17 5.9E-06 50.3 5.1 67 151-218 51-117 (537)
282 3ld9_A DTMP kinase, thymidylat 91.6 0.21 7.2E-06 43.7 5.1 42 43-85 20-62 (223)
283 1ukz_A Uridylate kinase; trans 91.5 0.14 4.9E-06 43.6 4.0 36 41-82 12-47 (203)
284 2qt1_A Nicotinamide riboside k 91.3 0.1 3.5E-06 44.7 2.8 37 43-84 20-56 (207)
285 2c5m_A CTP synthase; cytidine 91.2 0.32 1.1E-05 42.9 5.7 50 43-92 22-72 (294)
286 1gtv_A TMK, thymidylate kinase 91.0 0.068 2.3E-06 46.0 1.4 35 46-81 2-36 (214)
287 3io5_A Recombination and repai 91.0 0.18 6E-06 46.6 4.2 38 46-84 30-69 (333)
288 3t34_A Dynamin-related protein 91.0 1.9 6.6E-05 40.3 11.7 67 151-218 135-216 (360)
289 3iij_A Coilin-interacting nucl 90.9 0.18 6.3E-06 42.0 4.0 33 44-82 11-43 (180)
290 2rhm_A Putative kinase; P-loop 90.8 0.17 6E-06 42.5 3.8 34 43-82 4-37 (193)
291 2cdn_A Adenylate kinase; phosp 90.8 0.21 7.1E-06 42.6 4.3 36 41-82 17-52 (201)
292 1knq_A Gluconate kinase; ALFA/ 90.7 0.29 1E-05 40.5 5.1 34 44-83 8-41 (175)
293 3def_A T7I23.11 protein; chlor 90.7 0.71 2.4E-05 41.1 8.0 21 45-66 37-57 (262)
294 3ake_A Cytidylate kinase; CMP 90.7 0.15 5E-06 43.5 3.3 35 43-83 1-35 (208)
295 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.79 2.7E-05 37.7 7.8 68 150-218 51-122 (186)
296 4edh_A DTMP kinase, thymidylat 90.6 0.35 1.2E-05 41.9 5.5 36 44-80 6-41 (213)
297 1g8f_A Sulfate adenylyltransfe 90.4 0.2 6.9E-06 49.5 4.3 40 43-83 394-435 (511)
298 3kb2_A SPBC2 prophage-derived 90.4 0.21 7.1E-06 41.1 3.8 34 44-83 1-34 (173)
299 2a5y_B CED-4; apoptosis; HET: 90.3 0.18 6.1E-06 50.5 3.9 24 43-67 151-174 (549)
300 1zun_B Sulfate adenylate trans 90.3 0.47 1.6E-05 45.9 6.8 69 150-218 102-170 (434)
301 2fu5_C RAS-related protein RAB 90.3 2.8 9.6E-05 34.3 11.0 87 151-241 56-145 (183)
302 3e1s_A Exodeoxyribonuclease V, 90.2 0.29 1E-05 49.2 5.4 33 47-79 206-238 (574)
303 3orf_A Dihydropteridine reduct 90.2 0.23 8E-06 44.0 4.2 43 37-84 15-57 (251)
304 2bwj_A Adenylate kinase 5; pho 90.1 0.15 5E-06 43.2 2.7 35 43-83 11-45 (199)
305 2axn_A 6-phosphofructo-2-kinas 90.1 0.33 1.1E-05 48.2 5.6 40 43-83 34-73 (520)
306 4dcu_A GTP-binding protein ENG 90.0 1.1 3.8E-05 43.5 9.3 69 150-219 241-320 (456)
307 1tev_A UMP-CMP kinase; ploop, 90.0 0.25 8.5E-06 41.5 4.1 33 44-82 3-35 (196)
308 2qby_B CDC6 homolog 3, cell di 89.6 0.31 1E-05 45.9 4.8 39 44-83 45-91 (384)
309 4tmk_A Protein (thymidylate ki 89.6 0.45 1.5E-05 41.2 5.4 35 44-79 3-38 (213)
310 2jeo_A Uridine-cytidine kinase 89.5 0.4 1.4E-05 42.3 5.1 39 44-83 25-68 (245)
311 3v9p_A DTMP kinase, thymidylat 89.4 0.32 1.1E-05 42.7 4.4 37 43-80 24-64 (227)
312 2vhj_A Ntpase P4, P4; non- hyd 89.3 0.16 5.4E-06 47.1 2.4 34 45-82 124-157 (331)
313 2p5t_B PEZT; postsegregational 89.3 0.22 7.4E-06 44.3 3.3 38 43-84 31-68 (253)
314 1gvn_B Zeta; postsegregational 89.3 0.23 7.9E-06 45.2 3.5 36 45-83 33-68 (287)
315 2f6r_A COA synthase, bifunctio 89.2 0.31 1E-05 44.2 4.2 36 41-83 72-107 (281)
316 1l8q_A Chromosomal replication 89.1 0.36 1.2E-05 44.5 4.8 38 44-82 37-74 (324)
317 1y63_A LMAJ004144AAA protein; 89.0 0.38 1.3E-05 40.3 4.5 35 44-83 10-44 (184)
318 1ak2_A Adenylate kinase isoenz 89.0 0.34 1.2E-05 42.3 4.3 40 37-82 9-48 (233)
319 3upu_A ATP-dependent DNA helic 89.0 0.43 1.5E-05 46.5 5.4 33 47-79 47-80 (459)
320 2orv_A Thymidine kinase; TP4A 88.9 0.57 2E-05 41.0 5.6 40 41-81 16-55 (234)
321 2i1q_A DNA repair and recombin 88.8 0.22 7.6E-06 46.0 3.1 40 44-84 98-153 (322)
322 4eun_A Thermoresistant glucoki 88.8 0.45 1.5E-05 40.4 4.8 34 44-83 29-62 (200)
323 2grj_A Dephospho-COA kinase; T 88.7 0.37 1.3E-05 41.0 4.2 34 45-84 13-46 (192)
324 4eaq_A DTMP kinase, thymidylat 88.6 0.51 1.7E-05 41.3 5.1 35 43-79 25-59 (229)
325 3a8t_A Adenylate isopentenyltr 88.6 0.33 1.1E-05 45.2 4.0 37 42-84 38-74 (339)
326 2qby_A CDC6 homolog 1, cell di 88.5 0.33 1.1E-05 45.4 4.2 39 44-83 45-86 (386)
327 2chg_A Replication factor C sm 88.5 0.22 7.4E-06 42.5 2.6 35 47-82 41-75 (226)
328 3cmw_A Protein RECA, recombina 88.4 0.4 1.4E-05 54.0 5.2 41 44-85 383-423 (1706)
329 3aez_A Pantothenate kinase; tr 88.4 0.65 2.2E-05 42.8 5.9 42 42-84 88-131 (312)
330 1w4r_A Thymidine kinase; type 88.4 0.68 2.3E-05 39.4 5.6 44 37-81 13-56 (195)
331 4ehx_A Tetraacyldisaccharide 4 88.4 0.43 1.5E-05 44.1 4.7 35 44-80 36-71 (315)
332 3nva_A CTP synthase; rossman f 88.3 0.99 3.4E-05 44.3 7.3 49 43-91 2-51 (535)
333 1f60_A Elongation factor EEF1A 88.3 1.4 4.7E-05 42.9 8.5 69 150-218 83-158 (458)
334 1aky_A Adenylate kinase; ATP:A 88.2 0.41 1.4E-05 41.3 4.2 34 43-82 3-36 (220)
335 1w78_A FOLC bifunctional prote 88.2 0.64 2.2E-05 44.7 6.0 35 42-79 47-81 (422)
336 2vo1_A CTP synthase 1; pyrimid 88.1 1.1 3.8E-05 39.8 6.8 50 43-92 22-72 (295)
337 3cmw_A Protein RECA, recombina 88.1 0.43 1.5E-05 53.7 5.2 40 44-84 732-771 (1706)
338 3lw7_A Adenylate kinase relate 87.9 0.28 9.4E-06 40.2 2.8 27 46-77 3-29 (179)
339 3exa_A TRNA delta(2)-isopenten 87.9 0.44 1.5E-05 43.9 4.4 33 45-83 4-36 (322)
340 2pt5_A Shikimate kinase, SK; a 87.9 0.3 1E-05 40.0 3.0 32 46-83 2-33 (168)
341 3lv8_A DTMP kinase, thymidylat 87.9 0.51 1.7E-05 41.6 4.6 38 44-83 27-65 (236)
342 1jny_A EF-1-alpha, elongation 87.7 1.2 4E-05 43.1 7.5 69 150-218 82-157 (435)
343 1zuh_A Shikimate kinase; alpha 87.6 0.44 1.5E-05 39.1 3.9 35 43-83 6-40 (168)
344 3jvv_A Twitching mobility prot 87.4 5.3 0.00018 37.3 11.7 37 43-80 122-159 (356)
345 1jbw_A Folylpolyglutamate synt 87.4 0.7 2.4E-05 44.5 5.7 34 43-79 38-71 (428)
346 1zp6_A Hypothetical protein AT 87.3 0.41 1.4E-05 40.1 3.6 35 44-82 9-43 (191)
347 2e87_A Hypothetical protein PH 87.0 1.4 4.8E-05 41.2 7.5 66 151-217 213-292 (357)
348 4fcw_A Chaperone protein CLPB; 87.0 0.66 2.3E-05 42.1 5.1 39 45-84 48-86 (311)
349 1lnz_A SPO0B-associated GTP-bi 86.9 1.3 4.4E-05 41.3 7.1 64 152-217 206-286 (342)
350 1ltq_A Polynucleotide kinase; 86.8 0.5 1.7E-05 42.9 4.1 35 43-82 1-35 (301)
351 2c95_A Adenylate kinase 1; tra 86.7 0.49 1.7E-05 39.7 3.8 35 43-83 8-42 (196)
352 3n70_A Transport activator; si 86.7 0.32 1.1E-05 39.1 2.4 36 46-83 26-61 (145)
353 1cke_A CK, MSSA, protein (cyti 86.6 0.59 2E-05 40.3 4.3 33 44-82 5-37 (227)
354 4a74_A DNA repair and recombin 86.6 0.55 1.9E-05 40.5 4.1 39 44-83 25-69 (231)
355 3be4_A Adenylate kinase; malar 86.6 0.39 1.3E-05 41.4 3.1 33 44-82 5-37 (217)
356 1w5s_A Origin recognition comp 86.6 0.56 1.9E-05 44.4 4.5 33 51-83 58-96 (412)
357 3cmu_A Protein RECA, recombina 86.5 0.57 2E-05 53.5 5.0 41 44-85 383-423 (2050)
358 2bbw_A Adenylate kinase 4, AK4 86.5 0.57 2E-05 41.2 4.2 26 43-69 26-51 (246)
359 3cm0_A Adenylate kinase; ATP-b 86.5 0.56 1.9E-05 39.1 3.9 33 44-82 4-36 (186)
360 3t15_A Ribulose bisphosphate c 86.4 0.61 2.1E-05 42.4 4.5 35 43-81 35-69 (293)
361 3nrs_A Dihydrofolate:folylpoly 86.3 0.96 3.3E-05 43.7 6.0 36 41-79 49-84 (437)
362 3lda_A DNA repair protein RAD5 86.2 0.5 1.7E-05 45.2 3.9 39 44-83 178-222 (400)
363 4b3f_X DNA-binding protein smu 86.2 0.74 2.5E-05 46.9 5.4 34 47-80 207-240 (646)
364 3foz_A TRNA delta(2)-isopenten 86.2 0.78 2.7E-05 42.1 5.0 35 43-83 9-43 (316)
365 1fnn_A CDC6P, cell division co 86.1 0.89 3.1E-05 42.6 5.6 38 46-84 46-84 (389)
366 3cmu_A Protein RECA, recombina 86.1 0.71 2.4E-05 52.8 5.5 40 44-84 1427-1466(2050)
367 2bdt_A BH3686; alpha-beta prot 86.0 0.5 1.7E-05 39.6 3.4 24 43-67 1-24 (189)
368 2vli_A Antibiotic resistance p 85.8 0.33 1.1E-05 40.3 2.2 30 44-77 5-34 (183)
369 1w36_D RECD, exodeoxyribonucle 85.8 0.75 2.6E-05 46.6 5.2 34 46-79 165-202 (608)
370 1e8c_A UDP-N-acetylmuramoylala 85.8 0.96 3.3E-05 44.5 5.8 35 42-79 106-140 (498)
371 3eag_A UDP-N-acetylmuramate:L- 85.8 0.77 2.6E-05 42.5 4.9 33 42-77 106-138 (326)
372 3ged_A Short-chain dehydrogena 85.6 0.62 2.1E-05 41.3 3.9 36 43-83 1-36 (247)
373 3syl_A Protein CBBX; photosynt 85.4 0.99 3.4E-05 40.9 5.4 37 43-80 66-106 (309)
374 3do6_A Formate--tetrahydrofola 85.3 0.68 2.3E-05 44.7 4.2 42 42-83 41-85 (543)
375 1z6t_A APAF-1, apoptotic prote 85.3 0.56 1.9E-05 47.0 3.9 41 43-84 146-190 (591)
376 2v1u_A Cell division control p 85.2 0.68 2.3E-05 43.3 4.3 40 43-83 43-88 (387)
377 2wtz_A UDP-N-acetylmuramoyl-L- 85.0 1.1 3.7E-05 44.6 5.8 35 42-79 144-178 (535)
378 1zak_A Adenylate kinase; ATP:A 84.7 0.56 1.9E-05 40.5 3.2 26 43-69 4-29 (222)
379 1pzn_A RAD51, DNA repair and r 84.7 0.7 2.4E-05 43.3 4.1 40 43-83 130-175 (349)
380 1o5z_A Folylpolyglutamate synt 84.7 0.97 3.3E-05 43.8 5.2 34 43-79 51-84 (442)
381 1kgd_A CASK, peripheral plasma 84.7 0.67 2.3E-05 38.7 3.5 26 43-69 4-29 (180)
382 3ic5_A Putative saccharopine d 84.6 0.65 2.2E-05 35.2 3.2 35 43-83 4-39 (118)
383 2jaq_A Deoxyguanosine kinase; 84.4 0.77 2.6E-05 38.7 3.9 24 46-70 2-25 (205)
384 4e22_A Cytidylate kinase; P-lo 84.4 0.74 2.5E-05 40.8 3.9 27 42-69 25-51 (252)
385 1zd8_A GTP:AMP phosphotransfer 84.4 0.52 1.8E-05 40.9 2.8 33 44-82 7-39 (227)
386 2z4s_A Chromosomal replication 84.4 0.77 2.6E-05 44.5 4.3 38 44-82 130-169 (440)
387 2f7s_A C25KG, RAS-related prot 84.3 4.6 0.00016 34.1 8.9 87 151-241 83-173 (217)
388 1vt4_I APAF-1 related killer D 84.1 1.1 3.6E-05 48.3 5.4 40 44-84 150-192 (1221)
389 3ney_A 55 kDa erythrocyte memb 84.1 0.74 2.5E-05 39.3 3.6 31 38-69 12-43 (197)
390 3q72_A GTP-binding protein RAD 84.1 5.5 0.00019 31.7 8.9 87 150-241 47-138 (166)
391 3izq_1 HBS1P, elongation facto 84.1 3 0.0001 42.2 8.6 69 150-218 243-318 (611)
392 4ag6_A VIRB4 ATPase, type IV s 84.1 1.1 3.8E-05 42.4 5.3 35 47-82 38-72 (392)
393 2vos_A Folylpolyglutamate synt 83.9 1.3 4.4E-05 43.5 5.7 35 42-79 62-96 (487)
394 3dii_A Short-chain dehydrogena 83.6 0.84 2.9E-05 40.1 3.9 36 43-83 1-36 (247)
395 1tf7_A KAIC; homohexamer, hexa 83.6 1.2 4.1E-05 44.2 5.4 38 44-82 281-318 (525)
396 3cr8_A Sulfate adenylyltranfer 83.5 0.82 2.8E-05 45.6 4.2 40 43-83 368-408 (552)
397 2qtf_A Protein HFLX, GTP-bindi 83.3 3.5 0.00012 38.7 8.2 22 44-66 179-200 (364)
398 3ch4_B Pmkase, phosphomevalona 83.3 0.98 3.3E-05 38.7 4.0 29 40-69 7-35 (202)
399 1vht_A Dephospho-COA kinase; s 83.2 1.3 4.5E-05 37.9 4.9 33 44-83 4-36 (218)
400 3gee_A MNME, tRNA modification 83.1 1.3 4.6E-05 43.2 5.4 70 150-219 279-357 (476)
401 3tau_A Guanylate kinase, GMP k 82.8 1 3.5E-05 38.5 4.0 27 42-69 6-32 (208)
402 3geh_A MNME, tRNA modification 82.7 3.1 0.00011 40.4 7.9 66 150-218 270-343 (462)
403 3r20_A Cytidylate kinase; stru 82.7 1 3.6E-05 39.5 4.0 35 43-83 8-42 (233)
404 1njg_A DNA polymerase III subu 82.5 1.2 4.1E-05 38.2 4.4 28 44-72 45-72 (250)
405 2bjv_A PSP operon transcriptio 82.5 0.8 2.7E-05 40.7 3.3 38 45-83 30-67 (265)
406 3r6d_A NAD-dependent epimerase 82.3 1.1 3.9E-05 38.3 4.2 37 42-83 3-40 (221)
407 3gem_A Short chain dehydrogena 81.9 0.83 2.9E-05 40.6 3.2 36 44-84 27-62 (260)
408 2ekp_A 2-deoxy-D-gluconate 3-d 81.7 1.2 4E-05 38.9 4.1 36 43-83 1-36 (239)
409 3fb4_A Adenylate kinase; psych 81.6 1.1 3.7E-05 38.3 3.8 31 46-82 2-32 (216)
410 3lk7_A UDP-N-acetylmuramoylala 81.5 1.7 5.8E-05 42.1 5.5 32 44-78 112-143 (451)
411 3l0i_B RAS-related protein RAB 81.5 2.7 9.2E-05 35.1 6.2 68 151-218 81-151 (199)
412 1e4v_A Adenylate kinase; trans 81.5 0.93 3.2E-05 38.8 3.3 31 46-82 2-32 (214)
413 3tlx_A Adenylate kinase 2; str 81.1 1.5 5.1E-05 38.5 4.5 34 43-82 28-61 (243)
414 2gk6_A Regulator of nonsense t 81.1 1.5 5.2E-05 44.4 5.1 34 47-80 197-231 (624)
415 2qor_A Guanylate kinase; phosp 81.0 0.85 2.9E-05 38.8 2.8 25 44-69 12-36 (204)
416 2i3b_A HCR-ntpase, human cance 80.9 1.3 4.6E-05 37.4 4.0 28 45-73 2-29 (189)
417 1bif_A 6-phosphofructo-2-kinas 80.6 1.9 6.4E-05 42.0 5.5 39 43-82 38-76 (469)
418 2qz4_A Paraplegin; AAA+, SPG7, 80.6 2.4 8.1E-05 37.2 5.7 36 44-83 39-74 (262)
419 2xb4_A Adenylate kinase; ATP-b 80.5 1.2 4.1E-05 38.5 3.7 31 46-82 2-32 (223)
420 3sfz_A APAF-1, apoptotic pepti 80.5 1.2 4E-05 48.7 4.4 41 42-83 145-189 (1249)
421 2nwq_A Probable short-chain de 80.2 1.7 5.7E-05 38.9 4.6 38 41-83 18-55 (272)
422 3p19_A BFPVVD8, putative blue 80.2 1.5 5E-05 39.2 4.2 36 43-83 15-50 (266)
423 4dyv_A Short-chain dehydrogena 80.1 1.1 3.7E-05 40.2 3.3 36 43-83 27-62 (272)
424 2j41_A Guanylate kinase; GMP, 80.0 1.3 4.5E-05 37.3 3.7 25 44-69 6-30 (207)
425 2eyu_A Twitching motility prot 79.9 2.6 8.8E-05 37.6 5.7 39 42-81 23-62 (261)
426 2yc2_C IFT27, small RAB-relate 79.9 4.7 0.00016 33.6 7.2 86 151-240 72-164 (208)
427 3tr0_A Guanylate kinase, GMP k 79.8 1.3 4.4E-05 37.4 3.6 25 44-69 7-31 (205)
428 2ehd_A Oxidoreductase, oxidore 79.8 1.3 4.3E-05 38.4 3.6 37 42-83 3-39 (234)
429 1ofh_A ATP-dependent HSL prote 79.7 2.1 7.1E-05 38.6 5.2 36 44-83 50-85 (310)
430 2fna_A Conserved hypothetical 79.7 1.7 5.7E-05 40.0 4.6 35 45-83 31-65 (357)
431 4g65_A TRK system potassium up 79.7 2.8 9.5E-05 40.8 6.3 36 42-84 2-37 (461)
432 2x5o_A UDP-N-acetylmuramoylala 79.4 2.2 7.6E-05 41.1 5.5 33 44-79 104-136 (439)
433 1uay_A Type II 3-hydroxyacyl-C 79.3 1.3 4.5E-05 38.4 3.5 37 43-84 1-37 (242)
434 3guy_A Short-chain dehydrogena 79.2 1.3 4.3E-05 38.4 3.4 35 44-83 1-35 (230)
435 3dl0_A Adenylate kinase; phosp 79.2 1.1 3.8E-05 38.3 3.0 31 46-82 2-32 (216)
436 2cfc_A 2-(R)-hydroxypropyl-COM 79.2 1.6 5.4E-05 38.1 4.1 36 43-83 1-36 (250)
437 1geg_A Acetoin reductase; SDR 79.2 1.5 5.1E-05 38.6 3.9 36 43-83 1-36 (256)
438 2wjy_A Regulator of nonsense t 79.1 1.9 6.4E-05 45.1 5.1 33 47-79 373-406 (800)
439 3nwj_A ATSK2; P loop, shikimat 79.1 1.3 4.6E-05 39.2 3.5 34 44-83 48-81 (250)
440 1fjh_A 3alpha-hydroxysteroid d 79.0 1.6 5.4E-05 38.3 4.0 35 44-83 1-35 (257)
441 3umf_A Adenylate kinase; rossm 78.8 1.9 6.6E-05 37.3 4.4 27 42-69 27-53 (217)
442 1p5z_B DCK, deoxycytidine kina 78.6 0.53 1.8E-05 42.0 0.7 30 39-69 19-48 (263)
443 2ewv_A Twitching motility prot 78.4 2.6 8.8E-05 39.7 5.5 38 42-80 134-172 (372)
444 3llv_A Exopolyphosphatase-rela 78.2 1.9 6.5E-05 34.0 3.9 34 45-84 7-40 (141)
445 1zmt_A Haloalcohol dehalogenas 77.8 1.4 4.8E-05 38.8 3.3 35 44-83 1-35 (254)
446 3vtz_A Glucose 1-dehydrogenase 77.5 1.8 6.2E-05 38.6 4.0 38 42-84 12-49 (269)
447 1r5b_A Eukaryotic peptide chai 77.4 2.5 8.5E-05 41.2 5.2 68 150-217 119-193 (467)
448 3d8b_A Fidgetin-like protein 1 77.3 2.4 8.1E-05 39.6 4.9 36 42-81 115-150 (357)
449 3l6e_A Oxidoreductase, short-c 77.2 1.9 6.5E-05 37.5 3.9 35 44-83 3-37 (235)
450 3hn7_A UDP-N-acetylmuramate-L- 77.0 2.3 7.9E-05 42.1 4.9 34 42-78 120-153 (524)
451 2vp4_A Deoxynucleoside kinase; 77.0 1.6 5.6E-05 37.8 3.4 36 42-82 18-53 (230)
452 3qiv_A Short-chain dehydrogena 77.0 2.2 7.4E-05 37.4 4.3 36 43-83 8-43 (253)
453 4ffl_A PYLC; amino acid, biosy 76.9 3.8 0.00013 38.2 6.2 38 44-87 1-38 (363)
454 1ye8_A Protein THEP1, hypothet 76.7 2.1 7.3E-05 35.6 3.9 24 46-70 2-25 (178)
455 1nij_A Hypothetical protein YJ 76.7 1.2 4.2E-05 40.9 2.6 37 44-83 4-40 (318)
456 1d2n_A N-ethylmaleimide-sensit 76.5 2.9 9.9E-05 37.1 5.0 34 43-80 63-96 (272)
457 1p3d_A UDP-N-acetylmuramate--a 76.5 3.1 0.00011 40.5 5.7 37 44-83 118-155 (475)
458 1lvg_A Guanylate kinase, GMP k 76.4 1.7 5.9E-05 36.7 3.3 26 44-70 4-29 (198)
459 3a00_A Guanylate kinase, GMP k 76.3 1.3 4.5E-05 37.0 2.5 25 45-70 2-26 (186)
460 1um8_A ATP-dependent CLP prote 76.3 2.4 8E-05 39.8 4.6 36 44-83 72-107 (376)
461 2qen_A Walker-type ATPase; unk 76.3 1.8 6.2E-05 39.6 3.7 33 45-83 32-64 (350)
462 3b9p_A CG5977-PA, isoform A; A 76.2 3.5 0.00012 37.0 5.6 35 42-80 52-86 (297)
463 2qmh_A HPR kinase/phosphorylas 76.2 1.7 6E-05 37.1 3.2 26 44-74 34-59 (205)
464 2ae2_A Protein (tropinone redu 76.1 2.4 8.2E-05 37.4 4.4 35 44-83 9-43 (260)
465 1j6u_A UDP-N-acetylmuramate-al 76.1 2.6 8.9E-05 41.1 4.9 32 44-78 114-145 (469)
466 2hjr_A Malate dehydrogenase; m 76.0 2 6.8E-05 39.7 3.9 36 43-84 13-49 (328)
467 1dhr_A Dihydropteridine reduct 76.0 2.3 7.9E-05 37.0 4.2 37 43-84 6-42 (241)
468 1q3t_A Cytidylate kinase; nucl 76.0 2.4 8.2E-05 36.9 4.3 35 43-83 15-49 (236)
469 3ppi_A 3-hydroxyacyl-COA dehyd 76.0 2.4 8.1E-05 37.9 4.3 35 44-83 30-64 (281)
470 1lv7_A FTSH; alpha/beta domain 76.0 3.6 0.00012 36.1 5.4 33 44-80 45-77 (257)
471 3a28_C L-2.3-butanediol dehydr 75.7 1.6 5.4E-05 38.6 3.0 36 43-83 1-36 (258)
472 3h4m_A Proteasome-activating n 75.6 3 0.0001 37.1 5.0 35 43-81 50-84 (285)
473 3qvo_A NMRA family protein; st 75.5 1.5 5.2E-05 38.0 2.8 38 42-84 21-59 (236)
474 3o2g_A Gamma-butyrobetaine dio 75.5 2.4 8.2E-05 40.2 4.4 27 305-332 73-99 (388)
475 3zvl_A Bifunctional polynucleo 75.4 1.4 4.7E-05 42.3 2.7 35 43-83 257-291 (416)
476 4hv4_A UDP-N-acetylmuramate--L 75.4 2.4 8.4E-05 41.5 4.6 36 42-80 120-156 (494)
477 1sxj_A Activator 1 95 kDa subu 75.3 2.5 8.6E-05 41.7 4.6 35 44-82 77-111 (516)
478 3e2i_A Thymidine kinase; Zn-bi 75.2 3.5 0.00012 35.6 4.9 38 42-80 26-63 (219)
479 3tfo_A Putative 3-oxoacyl-(acy 75.2 2 6.9E-05 38.2 3.6 36 43-83 3-38 (264)
480 1pzg_A LDH, lactate dehydrogen 75.1 1.9 6.4E-05 40.0 3.4 35 44-84 9-44 (331)
481 2f00_A UDP-N-acetylmuramate--L 75.1 3.6 0.00012 40.3 5.7 37 44-83 119-156 (491)
482 3gvc_A Oxidoreductase, probabl 75.1 2.4 8.3E-05 38.0 4.1 35 44-83 29-63 (277)
483 3uf0_A Short-chain dehydrogena 75.1 2.5 8.7E-05 37.7 4.3 33 43-80 30-62 (273)
484 2ocp_A DGK, deoxyguanosine kin 75.1 1.7 5.8E-05 37.9 3.0 26 44-70 2-27 (241)
485 1xwi_A SKD1 protein; VPS4B, AA 75.0 3.2 0.00011 38.1 5.0 36 43-81 44-79 (322)
486 3tqf_A HPR(Ser) kinase; transf 74.8 2.8 9.6E-05 34.9 4.0 28 44-76 16-43 (181)
487 1ooe_A Dihydropteridine reduct 74.7 2.5 8.5E-05 36.6 4.0 36 44-84 3-38 (236)
488 3tzq_B Short-chain type dehydr 74.7 2.8 9.7E-05 37.3 4.5 36 44-84 11-46 (271)
489 4fgs_A Probable dehydrogenase 74.6 2.5 8.7E-05 37.9 4.1 42 35-83 22-63 (273)
490 2h92_A Cytidylate kinase; ross 74.6 1.2 4.3E-05 38.0 2.0 33 45-83 4-36 (219)
491 1e2k_A Thymidine kinase; trans 74.3 1.2 4.2E-05 41.3 1.9 28 45-73 5-32 (331)
492 3i4f_A 3-oxoacyl-[acyl-carrier 74.3 2.2 7.5E-05 37.7 3.6 37 42-83 5-41 (264)
493 3un1_A Probable oxidoreductase 74.3 2.4 8.3E-05 37.5 3.9 37 43-84 27-63 (260)
494 3v2h_A D-beta-hydroxybutyrate 74.2 2.2 7.6E-05 38.3 3.6 35 43-82 24-58 (281)
495 3h7a_A Short chain dehydrogena 74.1 2.5 8.6E-05 37.2 3.9 35 44-83 7-41 (252)
496 3v2g_A 3-oxoacyl-[acyl-carrier 74.1 2.7 9.2E-05 37.5 4.2 36 43-83 30-65 (271)
497 1htw_A HI0065; nucleotide-bind 74.0 2.5 8.7E-05 34.4 3.6 27 42-69 31-57 (158)
498 3l77_A Short-chain alcohol deh 74.0 2.7 9.3E-05 36.3 4.1 35 44-83 2-36 (235)
499 1e9r_A Conjugal transfer prote 73.9 3 0.0001 39.9 4.8 31 52-82 60-90 (437)
500 1c9k_A COBU, adenosylcobinamid 73.9 1.6 5.6E-05 36.6 2.4 32 47-83 2-33 (180)
No 1
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1.9e-34 Score=271.61 Aligned_cols=232 Identities=18% Similarity=0.151 Sum_probs=174.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc-ccc---------ccCCCCCceeee
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL---------EMNPEKRTIIPT 111 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~-~~~---------~~~~~~~~i~~~ 111 (398)
..+|||||+ +||||||||+|+|||.+||++|+||++||+|||++++..+++... ... ......+.....
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 357999998 699999999999999999999999999999999988766543221 110 011111223445
Q ss_pred ccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHH
Q 015919 112 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 112 ~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
...++.++|++....... .........+..+.....++.|||+++||+++....... +.+.++|.+++|++|+..|+.
T Consensus 125 ~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~ 202 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIY 202 (314)
T ss_dssp CGGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHH
T ss_pred cCCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHH
Confidence 567899999765433221 122223334444444333589999999999988766552 336688999999999999999
Q ss_pred HHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015919 192 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.++.+ +.+..|+|+|+... ....+++.++++.++++.||.+..+++|...|+|+++++
T Consensus 203 ~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~ 271 (314)
T 3fwy_A 203 AMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMD 271 (314)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCc-----------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEEC
Confidence 999988887754 45567899997422 135688999999999999999999999999999999999
Q ss_pred CCCHHHHH---HHHHHHHHHHHH
Q 015919 268 PCGEVANT---FQDLGVCVVQQC 287 (398)
Q Consensus 268 ~~s~~~~~---~~~la~~i~~~i 287 (398)
|+|+.+++ |++||++|+++.
T Consensus 272 P~S~~a~aa~~Y~~LA~eil~~~ 294 (314)
T 3fwy_A 272 EDQDVLAARAEYIRLAESLWRGL 294 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChhhHHHHHHHHHHHHHHhCC
Confidence 99986655 999999998654
No 2
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=100.00 E-value=1.9e-35 Score=269.93 Aligned_cols=228 Identities=17% Similarity=0.231 Sum_probs=178.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCcccC-Ccc--cccc---cCC-----CCCcee
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PEN--RLLE---MNP-----EKRTII 109 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q~~~~~~~l~-~~~--~~~~---~~~-----~~~~i~ 109 (398)
+++++|+|+|.||||||||+|+|||..||++ |+||++||+|+|.+++..+++ ... .+.+ ... ....+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 5789999999999999999999999999998 999999999999667777663 221 1111 100 011233
Q ss_pred eeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh
Q 015919 110 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 189 (398)
Q Consensus 110 ~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s 189 (398)
....+|++++|++.......... ...++++++.+. +.||||||||||+++.....+ +..+|.+++|+.|+..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 45568999999865443332222 234555655553 689999999999998876665 55789999999999999
Q ss_pred HHHHHHHHHHHhccC--CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCCh-hhhhcccCCCceEee
Q 015919 190 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 266 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~-~i~~a~~~g~~v~~~ 266 (398)
+.++.++++.++..+ ...+++|+|++..... ...+++++.+|.+++..+|++. .+.++...|+|+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~ 225 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKV 225 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCcccc
Confidence 999999999999887 5679999999654331 1247888899999999999996 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 015919 267 DPCGEVANTFQDLGVCVVQ 285 (398)
Q Consensus 267 ~~~s~~~~~~~~la~~i~~ 285 (398)
.|+++++++|.+|+++|++
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998865
No 3
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=100.00 E-value=1.7e-34 Score=262.35 Aligned_cols=229 Identities=21% Similarity=0.295 Sum_probs=181.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc---c---cccC-CCCCceeeeccCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---L---LEMN-PEKRTIIPTEYLG 115 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~---~---~~~~-~~~~~i~~~~~~~ 115 (398)
|+++|+|+|.||||||||+|+|||..||++|+||++||+|++.+++..+++.+.. + .... ...+.+.+...++
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 6899999999999999999999999999999999999999987777777765532 1 1111 1122333333489
Q ss_pred eEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 116 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
++++|+.... +...... ...+..+++.+. +.||||||||||+++.....+ +..+|.+++|+.|+..++.++.+
T Consensus 81 l~~lp~~~~~-~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDW-EHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSH-HHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCcc-chhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 9999943221 1111110 123556666654 789999999999999776655 56789999999999999999999
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHH
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 275 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~ 275 (398)
+++.+.+.+.+..++|+|++...... ...+++.+.++.++++.||++..+.+|...|+|+.++.|+++++++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 225 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKA 225 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHH
Confidence 99999988888999999996543321 3567888889998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015919 276 FQDLGVCVVQQ 286 (398)
Q Consensus 276 ~~~la~~i~~~ 286 (398)
|.+|+++|.++
T Consensus 226 ~~~la~~l~~~ 236 (237)
T 1g3q_A 226 FVKLAEEIEKL 236 (237)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 4
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=100.00 E-value=1.8e-34 Score=265.86 Aligned_cols=231 Identities=16% Similarity=0.224 Sum_probs=178.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccc-------cccC-CCCCceee-ecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-------LEMN-PEKRTIIP-TEY 113 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~-------~~~~-~~~~~i~~-~~~ 113 (398)
|+++|+|+|.||||||||+|+|||..||++|+||++||+|++.+++..+++.+... .... ...+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 78999999999999999999999999999999999999999878888887765431 1111 11122222 235
Q ss_pred CCeEEEecccCCCcccccCCccHHHHHHHHHhhccCC-CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHH
Q 015919 114 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 114 ~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
+|++++|++.... ..... ...+.++++.+. . .||||||||||+++..+..+ +..+|.+++|+.|+..++.+
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999875532 22222 234555555554 5 89999999999999766655 55889999999999999999
Q ss_pred HHHHHHHHhccCC--------CeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceE
Q 015919 193 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 264 (398)
Q Consensus 193 ~~~~~~~l~~~~~--------~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~ 264 (398)
+.++++.+...+. ...++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~ 228 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT----TSSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCcccccc----ccccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeE
Confidence 9999999987652 47899999975432110 00012478899999998899999999999999999999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q 015919 265 AADPCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 265 ~~~~~s~~~~~~~~la~~i~~~ 286 (398)
+ .|+++++++|.+|+++|.++
T Consensus 229 ~-~~~s~~~~~~~~la~~l~~~ 249 (260)
T 3q9l_A 229 L-DINADAGKAYADTVERLLGE 249 (260)
T ss_dssp G-CTTCHHHHHHHHHHHHHTTC
T ss_pred E-CCCCHHHHHHHHHHHHHhcC
Confidence 9 99999999999999998753
No 5
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=100.00 E-value=7.5e-34 Score=262.30 Aligned_cols=228 Identities=23% Similarity=0.267 Sum_probs=177.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc---c---cccC-CCCCceeeeccCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---L---LEMN-PEKRTIIPTEYLG 115 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~---~---~~~~-~~~~~i~~~~~~~ 115 (398)
|+++|+|+|+||||||||+|+|||..|+++|+||++||+|++.+++..+++.+.. + .... ...+.+.. ..+|
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 6899999999999999999999999999999999999999987777777765532 1 1111 11222223 3479
Q ss_pred eEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 116 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
++++|++.... ..... ....+..+++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..++.++.+
T Consensus 80 l~~lp~~~~~~-~~~~~---~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLE-GLRKA---NPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHH-HHHHH---CHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcC-hhhcc---ChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999443211 11111 0344555665554 789999999999999766655 45779999999999999999999
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHH
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 275 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~ 275 (398)
+++.+...+.+..++|+|++...... ...+++.+.++.++++.||++..+.+|...|+|+.++.|+++++++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 224 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARA 224 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHH
Confidence 99999888888899999996533211 3467788889998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015919 276 FQDLGVCVVQQ 286 (398)
Q Consensus 276 ~~~la~~i~~~ 286 (398)
|.+|+++|.++
T Consensus 225 ~~~la~~l~~~ 235 (263)
T 1hyq_A 225 IVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999775
No 6
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=100.00 E-value=4.5e-34 Score=263.09 Aligned_cols=232 Identities=21% Similarity=0.286 Sum_probs=173.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--cc---cccCCCCCceeeeccCCe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RL---LEMNPEKRTIIPTEYLGV 116 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~---~~~~~~~~~i~~~~~~~l 116 (398)
+++++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +..+++.+. .+ .......+.+.+ .+|+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN-ATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC-HHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 468999999999999999999999999999999999999999965 444555432 11 111122223333 6899
Q ss_pred EEEecccCCCccc-ccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 117 KLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 117 ~vlp~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
+++|++....... .+.... ..+.++++. ..||||||||||+++.....+ +.++|.+++|+.|+..++.++.+
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~--~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP--TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT--THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH--HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHHH
Confidence 9999765432210 111100 345555543 689999999999999776655 45789999999999999999888
Q ss_pred HHHHHhcc------CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhcccCCCceEeeCC
Q 015919 196 GVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADP 268 (398)
Q Consensus 196 ~~~~l~~~------~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~ 268 (398)
+++.+..+ +.++.++|+|++..... ..++..+.+++.+|.+++ +.||++..+.+|...|+|+.++.|
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~------~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~ 227 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGRTL------LAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAP 227 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTTCS------HHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHCT
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCCcH------HHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhCC
Confidence 88877643 45667999999644321 223456778888887765 679999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 015919 269 CGEVANTFQDLGVCVVQQCAK 289 (398)
Q Consensus 269 ~s~~~~~~~~la~~i~~~i~~ 289 (398)
+++++++|.+|+++|.+++..
T Consensus 228 ~~~~~~~~~~la~~l~~~~~~ 248 (257)
T 1wcv_1 228 TSPGAHAYRRLAEEVMARVQE 248 (257)
T ss_dssp TSHHHHHHHHHHHHHHHHHC-
T ss_pred CChHHHHHHHHHHHHHHhhcc
Confidence 999999999999999887654
No 7
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=8.9e-33 Score=255.11 Aligned_cols=230 Identities=40% Similarity=0.641 Sum_probs=175.3
Q ss_pred ccccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceee--e
Q 015919 34 EQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP--T 111 (398)
Q Consensus 34 ~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~--~ 111 (398)
+...+++++|+++|+|+|+||||||||+|+|||..||++|+||++||+|+|++++..+++........ ....+.+ .
T Consensus 8 ~~~a~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~ 85 (262)
T 2ph1_A 8 EEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAV--SAEGLEPVLT 85 (262)
T ss_dssp HHHHHHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEE--ETTEEECEEC
T ss_pred hhhhhhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccc--cccCcccccc
Confidence 34577888999999999999999999999999999999999999999999998877777755321100 0112222 2
Q ss_pred ccCCeEEEecccCCCccc---ccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh
Q 015919 112 EYLGVKLVSFGFSGQGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 188 (398)
Q Consensus 112 ~~~~l~vlp~~~~~~~~~---~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~ 188 (398)
..+|++++|++....... ..........++++++.+.++.||||||||||+++........+.++|.+++|+.|+..
T Consensus 86 ~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~ 165 (262)
T 2ph1_A 86 QKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQEL 165 (262)
T ss_dssp TTTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSC
T ss_pred CCCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccc
Confidence 457999999875432211 12233455678888877644789999999999998765544334478999999999999
Q ss_pred hHHHHHHHHHHHhccCCCeeEEEEccccccCC--CceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEe
Q 015919 189 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 265 (398)
Q Consensus 189 s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~ 265 (398)
++.++.++++.+++.+.+.+++|+|++..... ......+.....+++.+.+|.++++.||++..+.+|...|+|+..
T Consensus 166 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 166 TAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 99999999999999899999999999754221 111111234568899999999988999999999999999999853
No 8
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=100.00 E-value=6.4e-33 Score=256.73 Aligned_cols=230 Identities=18% Similarity=0.102 Sum_probs=156.6
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc---------cc---ccccC-CCCCc
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR---LLEMN-PEKRT 107 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~---------~~---~~~~~-~~~~~ 107 (398)
.+++++|+|+|+||||||||+|+|||..|| +|+||++||+|+|++.+..++... .. ..... ...+.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 102 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDST 102 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGG
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHh
Confidence 457899999999999999999999999999 999999999999987766553211 11 11111 22223
Q ss_pred eeeeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015919 108 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 108 i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
+.. ..+|++++|++.................++.+++.+. +.||||||||||+++..+..+ +.++|.+++|++|+.
T Consensus 103 i~~-~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 103 IIN-VDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAEK 178 (267)
T ss_dssp CEE-EETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESCT
T ss_pred hcc-CCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCCh
Confidence 333 3489999998754432222211122345677777664 899999999999999877666 557899999999999
Q ss_pred hhHHHHHHHHHHHhccCCC-eeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEee
Q 015919 188 LAFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 266 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~~-~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~ 266 (398)
.++.++.++++.++..+.+ .+++|+|++.... ..++..+.+.+ +.++++.||+++.+.++...|+++..
T Consensus 179 ~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-------~~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~- 248 (267)
T 3k9g_A 179 WAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-------THKTLFEILKT--KDRFLGTISEREDLNRRIAENNNFDL- 248 (267)
T ss_dssp THHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-------SCCHHHHHHTT--STTEEEEEEC-----------------
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-------hHHHHHHHHhc--CcccceecCcHHHHHHHHHhcCCcch-
Confidence 9999999999999988643 3579999973221 12233444443 67789999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 015919 267 DPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 267 ~~~s~~~~~~~~la~~i~~~i 287 (398)
.++++++|.++++++.+++
T Consensus 249 --~~~~~~~~~~i~~~l~~~l 267 (267)
T 3k9g_A 249 --NKDYIKEYENILEIFLKKI 267 (267)
T ss_dssp --CCHHHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHHHHHhhC
Confidence 5789999999999998763
No 9
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=100.00 E-value=4.5e-33 Score=247.31 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=161.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
||+|+|+|.||||||||+|+|||..|+++|+||++||+|+|++...++.. ...+++++|.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~------------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA------------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT------------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc------------------CCCCCcEEecCc
Confidence 68999999999999999999999999999999999999999866544321 113477887542
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc
Q 015919 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 203 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~ 203 (398)
..+.++++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..+ .++.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 23445555543 789999999999998777666 45679999999999999 9999999999876
Q ss_pred C-----CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhcccCCCceEeeCCCCHHHHHHH
Q 015919 204 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 277 (398)
Q Consensus 204 ~-----~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~ 277 (398)
+ .+ +++|+|++...... . ....++.+.+|.+++ +.||++..+.++...|+|+.+ .|+++++++|.
T Consensus 125 ~~~~~~~~-~~vv~N~~~~~~~~------~-~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~~~ 195 (206)
T 4dzz_A 125 QAYSRKVE-ARFLITRKIEMATM------L-NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGEIE 195 (206)
T ss_dssp SCGGGCCE-EEEEECSBCTTEEE------E-HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHHHH
T ss_pred HHhCCCCc-EEEEEeccCCCchH------H-HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHHHH
Confidence 4 33 49999997543211 1 234555666888877 789999999999999999999 99999999999
Q ss_pred HHHHHHHHHH
Q 015919 278 DLGVCVVQQC 287 (398)
Q Consensus 278 ~la~~i~~~i 287 (398)
+|+++|.+++
T Consensus 196 ~la~~i~~~l 205 (206)
T 4dzz_A 196 ILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 10
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=100.00 E-value=2.5e-32 Score=257.98 Aligned_cols=230 Identities=17% Similarity=0.113 Sum_probs=172.2
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc-ccccc---c------CCCCCceee
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLE---M------NPEKRTIIP 110 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~-~~~~~---~------~~~~~~i~~ 110 (398)
.+.+++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++.+..+.+.. .++.+ . ....+.+..
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~ 116 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF 116 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhc
Confidence 3468999999 89999999999999999999999999999999987665443211 11111 0 111222233
Q ss_pred eccCCeEEEecccCCCcccc--cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCh
Q 015919 111 TEYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 111 ~~~~~l~vlp~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~~ 187 (398)
...+|++++|++........ .........++.+ .+ ++.||||||||||+++... ..+ +..+|.+++|++|+.
T Consensus 117 ~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~ 191 (307)
T 3end_A 117 EGFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQH--HL-LDDTDVVIFDVLGDVVCGGFAAP--LQHADQAVVVTANDF 191 (307)
T ss_dssp ECGGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHT--TT-TSSCSEEEEEECCSSCCGGGGGG--GGTCSEEEEEECSSH
T ss_pred cCCCCceEEECCCcccccccchhhhHHHHHHHHhh--hc-cccCCEEEEeCCCccchHHHHHH--HHHCCEEEEEecCcH
Confidence 45689999998754332211 1111112233331 13 4789999999999887432 333 567899999999999
Q ss_pred hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCce
Q 015919 188 LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 263 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v 263 (398)
.++.++.++++.+... +.+++++|+||+... ...+++.+.+|.++++.||++..+.+|...|+|+
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----------~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v 260 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----------DEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTL 260 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----------HHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----------HHHHHHHHHcCCCceeeCCccHHHHHHHHcCCCe
Confidence 9999999999999864 456789999996521 3578889999999999999999999999999999
Q ss_pred EeeCCC---CHHHHHHHHHHHHHHHHH
Q 015919 264 VAADPC---GEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 264 ~~~~~~---s~~~~~~~~la~~i~~~i 287 (398)
.++.|+ ++++++|.+|+++|.++.
T Consensus 261 ~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 261 FEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 999999 899999999999997654
No 11
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=100.00 E-value=1.2e-32 Score=255.10 Aligned_cols=234 Identities=19% Similarity=0.185 Sum_probs=169.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---ccc---CCCCCceeeeccCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEM---NPEKRTIIPTEYLG 115 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~~~---~~~~~~i~~~~~~~ 115 (398)
|++|+| ++||||||||+|+|||..||++|+||++||+|+|++++..+++.... + ... ......+.....+|
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~ 79 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGG 79 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCC
Confidence 689999 68999999999999999999999999999999999988877653321 1 111 01111222345689
Q ss_pred eEEEecccCCCcccccCCccH-HHHHHHHHhhccCCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCChhhHHHH
Q 015919 116 VKLVSFGFSGQGRAIMRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~-~~~~~a~d~viiv~~p~~~s~~~~ 193 (398)
++++|++.............. ...+.+.+..+ ++.||||||||||+.....+. ......+|.+++|+.|+..++.++
T Consensus 80 l~vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~ 158 (269)
T 1cp2_A 80 IRCVESGGPEPGVGCAGRGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAA 158 (269)
T ss_dssp CEEEECCCCCTTSSCHHHHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHH
T ss_pred eeEEeCCCchhhccccCcchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHH
Confidence 999998754322111000000 00122223333 368999999999876532211 111236899999999999999999
Q ss_pred HHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCC
Q 015919 194 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 269 (398)
Q Consensus 194 ~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~ 269 (398)
.++++.+... +.+..++|+|++... ..++..+.+.+.+|.++++.||++..+.+|...|+|+.++.|+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~~~ 230 (269)
T 1cp2_A 159 NNISKGIQKYAKSGGVRLGGIICNSRKVA--------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPT 230 (269)
T ss_dssp HHHHHHHHHHBTTBBCEEEEEEEECCSSS--------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeecCCcc--------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEECCC
Confidence 9888887653 456789999996421 1234678888899988888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 015919 270 GEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 270 s~~~~~~~~la~~i~~~i 287 (398)
++++++|.+|+++|.++.
T Consensus 231 s~~~~~~~~l~~~l~~~~ 248 (269)
T 1cp2_A 231 CEQAEEYRELARKVDANE 248 (269)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHhcc
Confidence 999999999999997654
No 12
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.98 E-value=2.2e-32 Score=256.10 Aligned_cols=230 Identities=21% Similarity=0.197 Sum_probs=168.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--cc---cccC-----CCCCceeeecc
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RL---LEMN-----PEKRTIIPTEY 113 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~---~~~~-----~~~~~i~~~~~ 113 (398)
|++|+| ++||||||||+|+|||..||++|+||++||+|+|++++..+++... .+ .... .....+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 689999 5899999999999999999999999999999999998887765332 11 1111 11122233456
Q ss_pred CCeEEEecccCCCcccccCCccHHHH--HHHHHhhc--cCCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCChh
Q 015919 114 LGVKLVSFGFSGQGRAIMRGPMVSGV--INQLLTTT--EWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKL 188 (398)
Q Consensus 114 ~~l~vlp~~~~~~~~~~~~~~~~~~~--l~~ll~~~--~~~~yD~VIID~pp~~~~~~~~-~~~~~a~d~viiv~~p~~~ 188 (398)
+|++++|++....... ...... ...++..+ .++.||||||||||.+...... ......+|.+++|++|+..
T Consensus 81 ~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 81 GGVKCVESGGPEPGVG----CAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GGCEEEECCCCCTTTC----CHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHH
T ss_pred CCeEEEeCCCcccccc----ccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHH
Confidence 8999999764332211 111111 11222222 1368999999999876432111 1112468999999999999
Q ss_pred hHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceE
Q 015919 189 AFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 264 (398)
Q Consensus 189 s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~ 264 (398)
++.++.++++.+..+ +.+..++|+|++... ..++..+.+.+.+|.+++..||++..+.+|...|+|+.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~ 228 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--------REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVI 228 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--------THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--------hHHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCce
Confidence 999998888877653 567789999996321 12246778888899888889999999999999999999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q 015919 265 AADPCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 265 ~~~~~s~~~~~~~~la~~i~~~ 286 (398)
++.|+++++++|.+|+++|.++
T Consensus 229 ~~~~~s~~~~~~~~la~~l~~~ 250 (289)
T 2afh_E 229 EYDPKAKQADEYRALARKVVDN 250 (289)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHC
T ss_pred eeCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999765
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.98 E-value=7.1e-32 Score=246.97 Aligned_cols=224 Identities=14% Similarity=0.079 Sum_probs=167.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccc-------------cC----------
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE-------------MN---------- 102 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~-------------~~---------- 102 (398)
.|+| |+||||||||+|+|||..||++|+||++||+|+| +++..+++....... ..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 7899999999999999999999999999999998 677777765432110 00
Q ss_pred CCCCcee---eeccCCeEE-EecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCe
Q 015919 103 PEKRTII---PTEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 178 (398)
Q Consensus 103 ~~~~~i~---~~~~~~l~v-lp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~ 178 (398)
...+.+. .....++++ +|.+.......... ......++++++.+.++.||||||||||+++..+..+ +.++|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY-CRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC-HHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCC-cchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0000000 112246666 66543221111110 0111446666666523899999999999998866665 568899
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhC-CCeEEecCCChhhhhcc
Q 015919 179 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTLSASG 257 (398)
Q Consensus 179 viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~ip~~~~i~~a~ 257 (398)
+++|+.|+..++..+.++.+.+...+.+.+++|+|++... ...+++.+.++ .++.+.||++..+.+|.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~ 225 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIELS 225 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSCS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 9999999999999999999999888988899999996521 24677888887 66778899999999999
Q ss_pred cCCCceEeeCCCCHHHHHHHHHHHHHHHHH
Q 015919 258 DSGMPEVAADPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 258 ~~g~~v~~~~~~s~~~~~~~~la~~i~~~i 287 (398)
..|+|+.++.| +++++|++|+++|.++.
T Consensus 226 ~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 226 LKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp SSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred hCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999998876 69999999999998765
No 14
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.97 E-value=1.3e-31 Score=258.34 Aligned_cols=244 Identities=17% Similarity=0.119 Sum_probs=150.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc---------------------ccccc--
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------------------NRLLE-- 100 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~---------------------~~~~~-- 100 (398)
||+|+|+|+||||||||+|+|||..||++|+|||+||+|+|++++..+++.+ .++.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 6999999999999999999999999999999999999999998887776532 11111
Q ss_pred -----cCC-CCC--ceeeeccCCeEEEecccCCCcccccCC---------c----cHHHHHHHHHhhcc-CCCCcEEEEc
Q 015919 101 -----MNP-EKR--TIIPTEYLGVKLVSFGFSGQGRAIMRG---------P----MVSGVINQLLTTTE-WGELDYLVID 158 (398)
Q Consensus 101 -----~~~-~~~--~i~~~~~~~l~vlp~~~~~~~~~~~~~---------~----~~~~~l~~ll~~~~-~~~yD~VIID 158 (398)
... ..+ .+.....+|++++|++........... . .....++++++.+. +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 111 111 244445579999998765443221110 0 00123556665553 1389999999
Q ss_pred CCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC----------------------------------
Q 015919 159 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK---------------------------------- 204 (398)
Q Consensus 159 ~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~---------------------------------- 204 (398)
|||+++..+..+ +.++|.+++|+.|+..|+.++.++++.+.+++
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999999877766 56789999999999999999998888776542
Q ss_pred ---CCeeEEEEccccccCCCc--eecccCCChHHHHHHHh-----------CCCeEEecCCCh-hhhhcccCCCceEeeC
Q 015919 205 ---VPCIAVVENMCHFDADGK--RYYPFGRGSGSQVVQQF-----------GIPHLFDLPIRP-TLSASGDSGMPEVAAD 267 (398)
Q Consensus 205 ---~~~~~vV~N~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------g~~~~~~ip~~~-~i~~a~~~g~~v~~~~ 267 (398)
.+++|+|+|++....... ..........+.+.+.. ....++.||... .+..|...|+|+++..
T Consensus 239 ~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l~ 318 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMELS 318 (361)
T ss_dssp SSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC--------------------
T ss_pred ccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEECc
Confidence 667999999965433111 00122233344444444 233478888765 5678999999999997
Q ss_pred C-----------CCHHHHHHHHHHHHHHHHHHH
Q 015919 268 P-----------CGEVANTFQDLGVCVVQQCAK 289 (398)
Q Consensus 268 ~-----------~s~~~~~~~~la~~i~~~i~~ 289 (398)
+ ...+.+.|.+||..|.+++.-
T Consensus 319 ~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~ 351 (361)
T 3pg5_A 319 SSDRVRGAQINQRNAYAEKINSVAANVYKALFP 351 (361)
T ss_dssp --------------CCHHHHHHHHHHHHHHHCC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7 336788899999988888753
No 15
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.97 E-value=3.3e-32 Score=256.01 Aligned_cols=243 Identities=14% Similarity=0.161 Sum_probs=178.4
Q ss_pred ccccCCCeEEEEEc--CCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc---cCCcc---ccc---ccCCCCC
Q 015919 38 EGLQKISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPEN---RLL---EMNPEKR 106 (398)
Q Consensus 38 ~~~~~~~kvI~v~s--~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~---l~~~~---~~~---~~~~~~~ 106 (398)
..+.++.++|+|+| +||||||||+|+|||..||++|+||++||+|+|++.+..+ ++.+. .+. .......
T Consensus 28 r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 107 (298)
T 2oze_A 28 RILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLAS 107 (298)
T ss_dssp HHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGG
T ss_pred HHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhh
Confidence 33445678999999 8999999999999999999999999999999998754332 33221 111 1111222
Q ss_pred ceeeeccCCeEEEecccCCCcccccCC----ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEE
Q 015919 107 TIIPTEYLGVKLVSFGFSGQGRAIMRG----PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 182 (398)
Q Consensus 107 ~i~~~~~~~l~vlp~~~~~~~~~~~~~----~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv 182 (398)
.+... .+|++++|++........+.. ......++++++.+. +.||||||||||+++..+..+ +.++|.+++|
T Consensus 108 ~~~~~-~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv 183 (298)
T 2oze_A 108 SIVHL-TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIP 183 (298)
T ss_dssp GCEES-SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEE
T ss_pred hhccc-CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEE
Confidence 33333 589999998754432211111 112345777777774 789999999999999877665 4478999999
Q ss_pred eCCChhhHHHHHHHHHHHhcc------CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCC--CeE-EecCCChhh
Q 015919 183 TTPQKLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTL 253 (398)
Q Consensus 183 ~~p~~~s~~~~~~~~~~l~~~------~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~-~~ip~~~~i 253 (398)
+.|+..++.++.++++.+... +.++.++|+|++.... ....+..+++.+.++. +++ ..||++..+
T Consensus 184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~ 257 (298)
T 2oze_A 184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS------ATIKSNLEELYKQHKEDNLVFQNIIKRSNKV 257 (298)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC------HHHHHHHHHHHHHTTTTCCBCSSCEECCHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc------HHHHHHHHHHHHHhccccccccccccccHHH
Confidence 999999999999998888763 5677999999965432 1122457788888875 443 469999999
Q ss_pred hhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHhh
Q 015919 254 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIR 291 (398)
Q Consensus 254 ~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~~i~~~~ 291 (398)
.+|...|+|+.+ ...++++++|.+|+++|.+++....
T Consensus 258 ~~a~~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~ 294 (298)
T 2oze_A 258 STWSKNGITEHK-GYDKKVLSMYKNVFFEMLERIIQLE 294 (298)
T ss_dssp HHHHHHCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhh-hcChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999986 2234689999999999999887654
No 16
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.97 E-value=3.2e-32 Score=266.30 Aligned_cols=244 Identities=17% Similarity=0.212 Sum_probs=174.4
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecCCCCCCCcccCCcccc-----------ccc-
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRL-----------LEM- 101 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~q~~~~~~~l~~~~~~-----------~~~- 101 (398)
..+++++|+|+|+||||||||+|+|||..||+ +|+||++||+|+|++ +..+++..... ...
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~-l~~~l~~~~~~~~~~~~~~~~l~~~~ 182 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSS-ATMFLSHKHSIGIVNATSAQAMLQNV 182 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCH-HHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCC-hhHHhCCccccccccccHHHHHHhhc
Confidence 34578999999999999999999999999994 799999999999874 66666654321 000
Q ss_pred ---CCCCCceeeeccCCeEEEecccCCCcc---------ccc-CCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh
Q 015919 102 ---NPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL 168 (398)
Q Consensus 102 ---~~~~~~i~~~~~~~l~vlp~~~~~~~~---------~~~-~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~ 168 (398)
....+.+.+...+|++++|++...... ..+ ........++++++.+. +.||||||||||+++..+.
T Consensus 183 ~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~ 261 (398)
T 3ez2_A 183 SREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLK 261 (398)
T ss_dssp CHHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHH
T ss_pred cccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHH
Confidence 011234555667899999987652110 000 11122234455555553 8999999999999998877
Q ss_pred hhhhhcCCCeEEEEeCCChhhHHHHHH-------HHHHHhcc--CCCeeEEEEccccccCCCceecccCCChHHHHHHHh
Q 015919 169 TLCQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF 239 (398)
Q Consensus 169 ~~~~~~a~d~viiv~~p~~~s~~~~~~-------~~~~l~~~--~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (398)
++ +.++|.+++|++|+..++.++.+ +++.++.. +.++.++|.|+....... ..+...+.+++.+
T Consensus 262 ~~--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~ 334 (398)
T 3ez2_A 262 NA--LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVF 334 (398)
T ss_dssp HH--HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHH
T ss_pred HH--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHh
Confidence 76 55789999999999887654433 33344444 345566776665444321 1224567888889
Q ss_pred CCCeE-EecCCChhhhhcccCCCceEeeCCCC---------HHHHHHHHHHHHHHHHHHHhhc
Q 015919 240 GIPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIRQ 292 (398)
Q Consensus 240 g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~i~~~~~ 292 (398)
|.+++ +.||++..+.++...|+|++++.|++ .+.+++.+|+++|.++++.++.
T Consensus 335 g~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~~~ 397 (398)
T 3ez2_A 335 GGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRS 397 (398)
T ss_dssp GGGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98777 67999999999999999999998863 5677899999999998887753
No 17
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.97 E-value=9.3e-32 Score=263.40 Aligned_cols=244 Identities=18% Similarity=0.189 Sum_probs=140.7
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHH------HCCCcEEEEEecCCCCCCCcccCCccccc-----------c--
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E-- 100 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La------~~G~rVllIDlD~q~~~~~~~l~~~~~~~-----------~-- 100 (398)
..+++++|+|+|+||||||||+|+|||..|| ++|+||++||+|+|+ ++..+++...... .
T Consensus 107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~ 185 (403)
T 3ez9_A 107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNL 185 (403)
T ss_dssp HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTC
T ss_pred CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhcc
Confidence 3457899999999999999999999999999 689999999999998 5666666543210 0
Q ss_pred --cCCCCCceeeeccCCeEEEecccCCCcc---------ccc-CCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh
Q 015919 101 --MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL 168 (398)
Q Consensus 101 --~~~~~~~i~~~~~~~l~vlp~~~~~~~~---------~~~-~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~ 168 (398)
.....+.+.+...+|++++|++...... ..+ .......+++.+++.+. +.||||||||||+++..+.
T Consensus 186 ~~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~ 264 (403)
T 3ez9_A 186 DAETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLL 264 (403)
T ss_dssp CHHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHH
T ss_pred cccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHH
Confidence 0012344556667899999987652110 001 11122234466666664 7999999999999998777
Q ss_pred hhhhhcCCCeEEEEeCCChhhHHHHHH-------HHHHHhccC--CCeeEEEEccccccCCCceecccCCChHHHHHHHh
Q 015919 169 TLCQVVPLTAAVIVTTPQKLAFIDVAK-------GVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF 239 (398)
Q Consensus 169 ~~~~~~a~d~viiv~~p~~~s~~~~~~-------~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (398)
.+ +.++|.+++|++|+..++.++.+ +++.++..+ .++.+++.++....... ..+...+.+.+.+
T Consensus 265 ~a--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~-----~~~~~~~~~~~~~ 337 (403)
T 3ez9_A 265 NG--LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR-----DHETSHSLAREVY 337 (403)
T ss_dssp HH--HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH-----HHHHHHHHHHHHH
T ss_pred HH--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch-----hHHHHHHHHHHHh
Confidence 66 55789999999999887665443 344444443 44555554443333211 1223567778889
Q ss_pred CCCeE-EecCCChhhhhcccCCCceEeeCCCC---------HHHHHHHHHHHHHHHHHHHhhc
Q 015919 240 GIPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIRQ 292 (398)
Q Consensus 240 g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~i~~~~~ 292 (398)
|.+++ +.||+++.+.++...|+|++++.|++ .+.++|.+++++|.++++.++.
T Consensus 338 g~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~~~ 400 (403)
T 3ez9_A 338 ASNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVRG 400 (403)
T ss_dssp TTSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98877 77999999999999999999998753 5667899999999999887753
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.97 E-value=3.9e-31 Score=235.74 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=155.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
|+|+|+|+||||||||+|+|||..|+++| ||++||+|+|++.+.++ +. .+ . + .++++.+
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~-~~-~~-----------l----~-~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWG-KR-GS-----------L----P-FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHH-HH-SC-----------C----S-SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHh-cC-CC-----------C----C-cceeCHH--
Confidence 58999999999999999999999999999 99999999997654332 21 10 0 0 1455521
Q ss_pred CCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCC-CChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc
Q 015919 125 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 203 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~-~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~ 203 (398)
.++.+ ++.||||||||||+ .+..+..+ +..+|.+++|+.|+..++.++.++++.++..
T Consensus 60 --------------~l~~l-----~~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY-----APKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH-----GGGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh-----hhcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 24443 37899999999999 88776665 5578999999999999999999999999885
Q ss_pred -CCCeeEEEEccccccC-CCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhcccCCCceEee-CCCC-HHHHHHHH
Q 015919 204 -KVPCIAVVENMCHFDA-DGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAA-DPCG-EVANTFQD 278 (398)
Q Consensus 204 -~~~~~~vV~N~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~-~~ip~~~~i~~a~~~g~~v~~~-~~~s-~~~~~~~~ 278 (398)
+.+ .++|+|++.... .. . ....+..+++|.+++ ..||++..+.+|...|+|+.++ .|++ +++++|.+
T Consensus 119 ~~~~-~~vv~N~~~~~~~~~------~-~~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~~~ 190 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPSKD------G-DEARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDYKA 190 (209)
T ss_dssp CSSS-EEEEECSBCCTTSCH------H-HHHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHHHH
T ss_pred cCCC-EEEEEEecCCccchH------H-HHHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHHHH
Confidence 444 789999965432 11 1 123333344887776 6799999999999999999999 8999 99999999
Q ss_pred HHHHHHHHHHHhhc
Q 015919 279 LGVCVVQQCAKIRQ 292 (398)
Q Consensus 279 la~~i~~~i~~~~~ 292 (398)
|+++|.+++...+.
T Consensus 191 l~~el~~~~~~~~~ 204 (209)
T 3cwq_A 191 TGKEIVEEILTLEH 204 (209)
T ss_dssp HHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHhhhh
Confidence 99999988776543
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.96 E-value=2.7e-31 Score=248.28 Aligned_cols=223 Identities=17% Similarity=0.107 Sum_probs=156.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCe-EEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l-~vlp~ 121 (398)
|+++|+|+|+||||||||+|+|||..|+++|+||++||+|+..+++..+++....+..... .....++ +++|+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~------~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKK------IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHT------CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhcc------ccCCCchheEeeC
Confidence 7899999999999999999999999999999999999999933445555554332111000 0112467 78875
Q ss_pred cc--CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHH
Q 015919 122 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 199 (398)
Q Consensus 122 ~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~ 199 (398)
+. ....... .....+..+++.+. +.||||||||||+++..+..+ +..+|.+++|+.|+..++.++.++++.
T Consensus 77 ~~~~~~~~~~~----~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPEE----EQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCHH----HHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhhh----hhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 1111111 12335566666553 789999999999998777665 568899999999999988876554443
Q ss_pred -------------H---hc---c--C-C-CeeEEEEccccccC-CCceecccCCChHHHHHH---HhCCCeEEecCCChh
Q 015919 200 -------------F---SK---L--K-V-PCIAVVENMCHFDA-DGKRYYPFGRGSGSQVVQ---QFGIPHLFDLPIRPT 252 (398)
Q Consensus 200 -------------l---~~---~--~-~-~~~~vV~N~~~~~~-~~~~~~~~~~~~~~~~~~---~~g~~~~~~ip~~~~ 252 (398)
+ +. . + . ..+++|+|++.... .. .++..+.+.+ .+|..+.+.||++..
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~~~Ip~~~~ 223 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEARN------RKRLEDRLNALAKRVGFRIGPGLRDRVI 223 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCCGGG------HHHHHHHHHHHHHHHCCEEEECCCCCHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCCcch------hHHHHHHHHHHHHHcCCccCCCCCchHH
Confidence 3 21 1 2 1 23679999965433 11 1122333333 388766678999999
Q ss_pred hhhcccCCCceEeeCC----------CCHHHHHHHHHHHHHH
Q 015919 253 LSASGDSGMPEVAADP----------CGEVANTFQDLGVCVV 284 (398)
Q Consensus 253 i~~a~~~g~~v~~~~~----------~s~~~~~~~~la~~i~ 284 (398)
+.+|...|+|+.++.| +++++++|.+|+++|.
T Consensus 224 ~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 224 YRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 9999999999999998 7899999999998874
No 20
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=99.96 E-value=2.4e-29 Score=195.95 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=76.8
Q ss_pred ccceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCC
Q 015919 294 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 373 (398)
Q Consensus 294 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dg 373 (398)
.++.+++.+..+.|.|+|+||.. +.||++||||||||++|+++.|+||. +..+|.+|.+.+++++|+|+|+|+|+||
T Consensus 8 ~P~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~c~ca~c~~~~t~qr~--l~~~~~~v~~~~i~~~g~yal~i~wsDG 84 (101)
T 3luu_A 8 QPLEIRPLMISRVMEVDWADGHT-SRLTFEHLRVECPCAECKGHTPDQAQ--IVTGKEHVSVVEVVPVGHYAVQLHFSDG 84 (101)
T ss_dssp CEEEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCCC----------C--CCCCCTTCCEEEEEEETTTEEEEEETTS
T ss_pred CCeEEEEeCCCCEEEEEeCCCCE-EEECHHHHHhhCCChhhcCccCCccc--cccCCCCcceeEEEECCCCeEEEEECCC
Confidence 56788999999999999999998 89999999999999999999999997 5689999999999999999999999999
Q ss_pred C-cccCChHHHHhhhh
Q 015919 374 F-SQIAPYDQLQTMER 388 (398)
Q Consensus 374 h-~s~y~~~~L~~~~~ 388 (398)
| +|+|+|+||++++.
T Consensus 85 H~~s~Y~~~~L~~~~~ 100 (101)
T 3luu_A 85 HNTGIFTWEYLRRLDA 100 (101)
T ss_dssp CCCCEEEHHHHHHHTT
T ss_pred CceeEECHHHHHHhhh
Confidence 9 89999999999874
No 21
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.93 E-value=1.5e-25 Score=208.50 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=133.8
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc------ccccCCCCCceeeeccC
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYL 114 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~------~~~~~~~~~~i~~~~~~ 114 (398)
.+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+++.+.. +.......+.+.....+
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 168 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIA 168 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence 345799999999999999999999999999999999999999999888888776532 11223445556666678
Q ss_pred CeEEEecccCCCc-ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHH
Q 015919 115 GVKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 115 ~l~vlp~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~ 193 (398)
|++++|++..... .+.+... .+.++++.+. +.||+|||||||.+....... ....+|.+++|+.++..+...+
T Consensus 169 ~l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~-l~~~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 169 KFDLIPRGQVPPNPSELLMSE----RFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-VGRHVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp TEEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HTTTCSEEEEEEETTTSBHHHH
T ss_pred CEEEEeCCCCCCCHHHHhchH----HHHHHHHHHH-hCCCEEEEcCCCCcchHHHHH-HHHHCCeEEEEEeCCCCcHHHH
Confidence 9999998765433 2333333 3444554443 789999999999876432111 1335799999999999999999
Q ss_pred HHHHHHHhccCCCeeEEEEccccccC
Q 015919 194 AKGVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
.+.++.+...+.+++|+|+|++....
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHHhCCCCEEEEEEcCccccc
Confidence 99999999999999999999975443
No 22
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=99.93 E-value=3.7e-26 Score=184.85 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=82.5
Q ss_pred ccceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCC
Q 015919 294 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 373 (398)
Q Consensus 294 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dg 373 (398)
.++.+.+....+.+.|.|+||.. +.||++||||||||++|+++. ||.++. .+.+|.+.+++++|+|+|+|+|+||
T Consensus 10 ~p~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~Cpcaec~~~~--qr~l~~--~~~dv~i~~i~~vG~yaL~I~wsDG 84 (132)
T 2l6n_A 10 KVTGLKLKRKSRQLEISFDNGQQ-FTLSCELLRVYSPSAEVHGHG--NPVLVT--HKKNVNINAITPVGNYAVKLVFDDG 84 (132)
T ss_dssp CEEEEEEEGGGTEEEEEETTSCE-EEEEHHHHHHSCSCSSSSSSS--CCCCCC--CCSSCCEEEEEEETTTEEEEEETTT
T ss_pred CCeeEEEecCCCEEEEEECCCCE-EEeCHHHHHhcCCCcccCCcc--cccccc--CCCCcceEEEEecCCceEEEEeCCC
Confidence 46678888889999999999998 899999999999999999987 999886 5689999999999999999999999
Q ss_pred Ccc-cCChHHHHhhhh
Q 015919 374 FSQ-IAPYDQLQTMER 388 (398)
Q Consensus 374 h~s-~y~~~~L~~~~~ 388 (398)
|.| +|+|+||++++.
T Consensus 85 H~SGiYs~~~L~~l~~ 100 (132)
T 2l6n_A 85 HDTGLYSWKVLYDLAS 100 (132)
T ss_dssp BCCCCEEHHHHHHHHT
T ss_pred CccCEECHHHHHHHhh
Confidence 977 999999999854
No 23
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=99.93 E-value=8e-26 Score=181.48 Aligned_cols=89 Identities=24% Similarity=0.430 Sum_probs=81.5
Q ss_pred ccceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCC
Q 015919 294 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 373 (398)
Q Consensus 294 ~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dg 373 (398)
.|+.+.+....+.+.|+|. |.+ +.||++|||||||||+|+++ +||.+++. +.+|.+.+++++|+|+|+|+|+||
T Consensus 4 ~P~~i~l~~~~~~L~v~w~-G~~-~~~~~~wLRd~Cpcaec~~~--~qr~l~~~--~~dv~i~~i~~~G~yaL~I~wsDG 77 (124)
T 2l6p_A 4 IPSAIQLHKASKTLTLRYG-EDS-YDLPAEFLRVHSPSAEVQGH--GNPVLQYG--KLNVGLVGVEPAGQYALKLSFDDG 77 (124)
T ss_dssp CCSCCBCCTTTCEEEEEET-TEE-EEEEHHHHHHTCCCSSCCSC--CCCCCCCS--CTTCCEEEEEECSSSCEEEEETTS
T ss_pred CCeEEEEecCCCEEEEEEC-CEE-EEeCHHHHHhcCCCcccCCC--CccccccC--CCCcceEEEEEcCCceEEEEECCC
Confidence 4677888888999999999 877 99999999999999999997 99999874 689999999999999999999999
Q ss_pred C-cccCChHHHHhhhh
Q 015919 374 F-SQIAPYDQLQTMER 388 (398)
Q Consensus 374 h-~s~y~~~~L~~~~~ 388 (398)
| +|+|+|+||++++.
T Consensus 78 H~sgiY~~~~L~~l~~ 93 (124)
T 2l6p_A 78 HDSGLFTWDYLYELAT 93 (124)
T ss_dssp CCCCCCTTHHHHHHHT
T ss_pred CcceEECHHHHHHhhh
Confidence 9 68999999999853
No 24
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.92 E-value=2.9e-25 Score=205.31 Aligned_cols=171 Identities=23% Similarity=0.255 Sum_probs=128.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---ccc-CCCCCceeeeccCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEM-NPEKRTIIPTEYLG 115 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~~~-~~~~~~i~~~~~~~ 115 (398)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+.+..+++.... + ... ....+.+.....++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 46799999999999999999999999999999999999999999888877775432 1 111 12223344555589
Q ss_pred eEEEecccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015919 116 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 116 l~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
++++|++...... +.+... .+.++++.+. +.||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 160 l~vl~~g~~~~~~~ell~~~----~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSR----AFANLYDTLL-MNYNFVIIDTPPVNTVTDAQL-FSKFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSH----HHHHHHHHHH-HHCSEEEEECCCTTTCSHHHH-HHHHHCEEEEEEETTSCCHHHHH
T ss_pred EEEEECCCCCCCHHHHhChH----HHHHHHHHHH-hCCCEEEEeCCCCchHHHHHH-HHHHCCEEEEEEeCCCCcHHHHH
Confidence 9999987544332 223333 3445555443 789999999999775322111 12346999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEcccccc
Q 015919 195 KGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.++.+...+.+++|+|+|++...
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCC
Confidence 999999999999999999996543
No 25
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.92 E-value=6.1e-26 Score=219.66 Aligned_cols=200 Identities=18% Similarity=0.185 Sum_probs=134.2
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--ccc---c----CC----CCCc
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE---M----NP----EKRT 107 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~~~---~----~~----~~~~ 107 (398)
.+.+++|+|+|+||||||||+|+|||..||++|+||++||+| ..+++..+++.+.. +.+ . .. ....
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 356899999999999999999999999999999999999999 55577777775532 111 0 00 0112
Q ss_pred eeeeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015919 108 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 108 i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
.......|++++|++........+........++.+.. +..||||||||||+.+..+..+ +.++|.+++|++|+.
T Consensus 219 ~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 219 CIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGSQ 293 (373)
T ss_dssp TCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCCH
T ss_pred HhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCCc
Confidence 22333489999998765544444444444444555432 2689999999999999877766 557899999999999
Q ss_pred hhHHHHHHHHHHHhccCC-CeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 015919 188 LAFIDVAKGVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 253 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~-~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i 253 (398)
.+..++..+.+.++.+.. ..+++|.|+.....+.. ...+.+.+..+.++++.||+|+..
T Consensus 294 ~s~~~l~~~~~~l~~l~~~~~~~vv~N~~~v~~~~~-------~~~~~fl~~~~l~~lG~IP~D~~~ 353 (373)
T 3fkq_A 294 LSNYKFMRAYESVVLLEQNDDINIIRNMNMIYNKFS-------NKNSEMLSNISIKTIGGAPRYEHA 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCGGGEEEEECSCC-------TTTCCCCCSCSCEEEEECCCCTTC
T ss_pred hHHHHHHHHHHHHHHhcccCCcEEEehhHHHHHHHH-------HHHHHHhhcCCccceeecCCCCCc
Confidence 985544444444433221 22566666643222111 122333334578899999998754
No 26
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.91 E-value=2.3e-24 Score=202.07 Aligned_cols=171 Identities=17% Similarity=0.175 Sum_probs=128.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---cc-cCCCCCceeeeccCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LE-MNPEKRTIIPTEYLG 115 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~~-~~~~~~~i~~~~~~~ 115 (398)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+++.... + .. .....+.+.+...+|
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 45799999999999999999999999999999999999999988888777765432 1 11 112223445555689
Q ss_pred eEEEecccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015919 116 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 116 l~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
++++|++...... +.+.. ..++++++.+. +.||+|||||||.+....... ....+|.+++|+.++..+...+.
T Consensus 182 l~vl~~g~~~~~~~ell~~----~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-VGRSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EEEECCCSCCSCHHHHHTS----HHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HGGGCSEEEEEEETTTSCTTHHH
T ss_pred EEEEECCCCCCCHHHHhCH----HHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH-HHHHCCEEEEEEcCCCChHHHHH
Confidence 9999987544332 22233 33455555543 789999999999876321111 12357999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEcccccc
Q 015919 195 KGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.++.+.+.+.++.|+|+|++...
T Consensus 256 ~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 256 LSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HHHHHHHHTTCCCCCEEEEECCCC
T ss_pred HHHHHHHhCCCCeEEEEEeCCccC
Confidence 999999999999999999997544
No 27
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.89 E-value=3.6e-23 Score=198.21 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=131.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+.+++|+|+|+||||||||+|+|||..||++|+||++||+|++. +++.+++.+..-. .......++++....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~-~l~~~l~~~~~~~-------~~~v~g~~~l~~~~i 94 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH-SLRDIFEQEFGHE-------PTKVKGYDNLYVVEI 94 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC-HHHHHHCSCCCSS-------CEECTTCSSEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC-CHHHHhCCCCCcC-------ccccccccceeeecc
Confidence 46799999999999999999999999999999999999999964 5656655432100 000001123332221
Q ss_pred ccCC--------------------C-------cccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhh--
Q 015919 122 GFSG--------------------Q-------GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ-- 172 (398)
Q Consensus 122 ~~~~--------------------~-------~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~-- 172 (398)
+... . ......+......+..+.+.+.+..||||||||||+.....+-...
T Consensus 95 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~ 174 (349)
T 3ug7_A 95 DPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEV 174 (349)
T ss_dssp CHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHH
Confidence 1000 0 0001111111122333443333579999999999965432110000
Q ss_pred ---------------------------------------------------------h--cCCCeEEEEeCCChhhHHHH
Q 015919 173 ---------------------------------------------------------V--VPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 173 ---------------------------------------------------------~--~a~d~viiv~~p~~~s~~~~ 193 (398)
+ ...+.+++|++|+..++..+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~ 254 (349)
T 3ug7_A 175 MDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILES 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHH
Confidence 0 01478999999999999999
Q ss_pred HHHHHHHhccCCCeeEEEEccccccCC-----CceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015919 194 AKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
.+.++.+++.++++.|+|+||+.+... ..+. ....+.++++.+.++.+.++.||.++
T Consensus 255 ~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 255 ERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARR-ELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred HHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 999999999999999999999876521 0111 11245678889999988999999865
No 28
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=4.9e-24 Score=202.35 Aligned_cols=207 Identities=16% Similarity=0.215 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--cccc-------CCCCCceee---
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM-------NPEKRTIIP--- 110 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~~~~-------~~~~~~i~~--- 110 (398)
.|++|+|+|+||||||||+|+|||..||++|+||++||+|++ +++..+++.+.. .... .........
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA-HSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS-CCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC-cCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 358999999999999999999999999999999999999995 456565554311 0000 000000000
Q ss_pred --eccCCeEEEecccCCCc-----ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh-h-------------
Q 015919 111 --TEYLGVKLVSFGFSGQG-----RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T------------- 169 (398)
Q Consensus 111 --~~~~~l~vlp~~~~~~~-----~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~-~------------- 169 (398)
.......+++.+..... ....++..-...+..+.+.+.+..||+|||||||+.+...+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 00000112222211100 00112222222333444333347999999999994321100 0
Q ss_pred ---------------------------------------------hhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC
Q 015919 170 ---------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 204 (398)
Q Consensus 170 ---------------------------------------------~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~ 204 (398)
.+.-...+.+++|++|+..++..+.+.++.++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 00001135899999999999999999999999999
Q ss_pred CCeeEEEEccccccCCC-----ceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015919 205 VPCIAVVENMCHFDADG-----KRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 205 ~~~~~vV~N~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
+++.|+|+|++.+.... .+. ....+.++++.+.++...++.+|..+
T Consensus 251 i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 251 IHADGVIVNQVLPEESDCEFCNARR-KLQQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CCccEEEEcCCccccCCChHHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 99999999998765210 001 12235678888889888888998754
No 29
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.89 E-value=5.7e-24 Score=203.83 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=110.7
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCCcccCCccc-----------ccccCCCCCc
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMNPEKRT 107 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllIDlD~q~~~~~~~l~~~~~-----------~~~~~~~~~~ 107 (398)
.+..++|+|+|+||||||||+|+|||..|| ++|+||++||+|++ ++++.+++.+.. +.........
T Consensus 14 ~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~ 92 (354)
T 2woj_A 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSA 92 (354)
T ss_dssp TCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHH
Confidence 345689999999999999999999999999 99999999999996 677777765421 0000000000
Q ss_pred --------eeee--------ccCCeEEEecccCCCcc-cccCCccHHHHHHHHHhhccC------CCCcEEEEcCCC-CC
Q 015919 108 --------IIPT--------EYLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEW------GELDYLVIDMPP-GT 163 (398)
Q Consensus 108 --------i~~~--------~~~~l~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~------~~yD~VIID~pp-~~ 163 (398)
+... ...++++++.+....+. ...++..-...+.++++.+.+ ..|||||||||| |.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~ 172 (354)
T 2woj_A 93 ALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGH 172 (354)
T ss_dssp HHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHH
T ss_pred HHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchH
Confidence 0000 00146666532110110 112222222455666655532 279999999999 43
Q ss_pred C---------------------hhhhhh-----------------------------hhhcCCCeEEEEeCCChhhHHHH
Q 015919 164 G---------------------DIQLTL-----------------------------CQVVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 164 ~---------------------~~~~~~-----------------------------~~~~a~d~viiv~~p~~~s~~~~ 193 (398)
. ...... +.-..++.+++|++|+..++..+
T Consensus 173 tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea 252 (354)
T 2woj_A 173 TLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252 (354)
T ss_dssp HHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHH
Confidence 0 000000 00015688999999999999999
Q ss_pred HHHHHHHhccCCCeeEEEEcccc
Q 015919 194 AKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
.++++.++..+++..++|+|++.
T Consensus 253 ~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 253 ERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCCEEEEecCC
Confidence 99999999999999999999987
No 30
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.87 E-value=6.4e-23 Score=198.68 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=84.1
Q ss_pred eeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCCCcc
Q 015919 297 AVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQ 376 (398)
Q Consensus 297 ~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dgh~s 376 (398)
.+......+.+.|+|+||.+ +.||+.||||||+|++|+|+.|+||++++.++|.++.+.+++++| |+|+|.|+|||+|
T Consensus 8 ~~~~~~~~~~l~v~w~dG~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~s 85 (388)
T 3o2g_A 8 KAEALDGAHLMQILWYDEEE-SLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHYS 85 (388)
T ss_dssp EEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCEE
T ss_pred eeeecCCCCEEEEEECCCCe-eeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCce
Confidence 45677788999999999999 899999999999999999999999999999999999999999998 7999999999999
Q ss_pred cCChHHHHhhh
Q 015919 377 IAPYDQLQTME 387 (398)
Q Consensus 377 ~y~~~~L~~~~ 387 (398)
+|+|+||++++
T Consensus 86 ~y~~~~L~~~~ 96 (388)
T 3o2g_A 86 EFQADWLKKRC 96 (388)
T ss_dssp EEEHHHHHHTC
T ss_pred EeCHHHHHhhc
Confidence 99999999874
No 31
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.86 E-value=5.2e-22 Score=188.24 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=121.4
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEE
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 119 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 119 (398)
+.+.+++|.|+|+||||||||+|+|||..||++|+||++||+|++.+.. .+++....... ......+|++.+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~-~~l~~~~~~~~-------~~v~~~~~L~~~ 82 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLS-DAFSQKFGKEA-------RLVEGFDNLYAM 82 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHH-HHHTSCCCSSC-------EECTTCSSEEEE
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChh-HHhccccCCCc-------eeecCCCCceee
Confidence 3445567779999999999999999999999999999999999986543 34443211000 000000111111
Q ss_pred ecc----------------------c--CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhh-----
Q 015919 120 SFG----------------------F--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL----- 170 (398)
Q Consensus 120 p~~----------------------~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~----- 170 (398)
..+ . .........+..-...+.++.+.+.+..||||||||||......+-.
T Consensus 83 ~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l 162 (334)
T 3iqw_A 83 EIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVL 162 (334)
T ss_dssp ECCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC
T ss_pred ecCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 100 0 00000111222222234444444445899999999999322111000
Q ss_pred ------------------------------------------------------hhhcCCCeEEEEeCCChhhHHHHHHH
Q 015919 171 ------------------------------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 171 ------------------------------------------------------~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
+.-...+.+++|++|+..++..+.+.
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~ 242 (334)
T 3iqw_A 163 EKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERM 242 (334)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHH
Confidence 00002357999999999999999999
Q ss_pred HHHHhccCCCeeEEEEccccccCCC-c-----eecccCCChHHHHHHHhCC-CeEEecCC
Q 015919 197 VRMFSKLKVPCIAVVENMCHFDADG-K-----RYYPFGRGSGSQVVQQFGI-PHLFDLPI 249 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~-~-----~~~~~~~~~~~~~~~~~g~-~~~~~ip~ 249 (398)
++.++..++++.++|+|++.+.... . ..+..++..++++.+.|+. ..+..+|.
T Consensus 243 ~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 243 IQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 9999999999999999998642211 0 0112233456777777764 34556665
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.86 E-value=6.8e-22 Score=177.57 Aligned_cols=197 Identities=13% Similarity=0.051 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc-cCC---cccccccCCCCCceeeeccCCeEEEe
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSP---ENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~-l~~---~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
|+|+|+|.||||||||+|+|||.+|+++|+||+++ |||+...... .+. +............ .....+..+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~--dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~ 77 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY--KPVASGSEKTPEGLRNSDALALQRNSSLQL--DYATVNPYTFA 77 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE--CSEEESCBCCTTSCBCHHHHHHHHTCSSCC--CHHHHCSEEES
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cceecCCccCCCCcChHHHHHHHHHhCCCC--ChhhcccEEeC
Confidence 78999999999999999999999999999999996 5665433211 000 0000000000000 00000112222
Q ss_pred cccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh---hhhhhhcC--CCeEEEEeCCChhhHHHHH
Q 015919 121 FGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 121 ~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~---~~~~~~~a--~d~viiv~~p~~~s~~~~~ 194 (398)
.+...... ...........+.++++.+. +.||||||||||+++... .....+.+ .+.+++|+.++..++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~ 156 (224)
T 1byi_A 78 EPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAM 156 (224)
T ss_dssp SCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHH
Confidence 11110000 00011122345666666654 789999999999987421 11111111 1358999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChh
Q 015919 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 252 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~ 252 (398)
..++.+++.+.++.|+|+|++..... ...+..+.+++.++.++++.||++..
T Consensus 157 ~~i~~l~~~~~~i~gvvlN~~~~~~~------~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 157 LTAQVIQHAGLTLAGWVANDVTPPGK------RHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHTTCCEEEEEEECCSSCCT------THHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHCCCcEEEEEEeCCCCchh------hHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 99999888888999999999754321 22346777888899988899999874
No 33
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.86 E-value=6.4e-22 Score=188.02 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=124.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccccc--ccCCCCCceeee--------
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRTIIPT-------- 111 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~--~~~~~~~~i~~~-------- 111 (398)
+..++|+|+|+||||||||+|+|||..||++|+||++||+|++ +++..+++...... ...... .+...
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~-~l~~~~~~~~~~~ 93 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFD-NLSAMEIDPNLSI 93 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCS-SEEEEECCHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCC-CeeEEecCHHHHH
Confidence 3468899999999999999999999999999999999999998 66666665431100 000000 00000
Q ss_pred --ccCC-----eE-EEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCC-CCCh------hhh--------
Q 015919 112 --EYLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGD------IQL-------- 168 (398)
Q Consensus 112 --~~~~-----l~-vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp-~~~~------~~~-------- 168 (398)
...+ ++ ++|.... .-...+.+......++++.+.+.++.|||||||||| |... ..+
T Consensus 94 ~~~~~~~~~~~l~~~l~~~l~-~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~ 172 (329)
T 2woo_A 94 QEMTEQADQQNPNNPLSGMMQ-DLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLG 172 (329)
T ss_dssp HHHHHTC--------CCHHHH-HHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11 1221000 001112222222345556555544799999999999 3320 000
Q ss_pred ----------hhh-----------h------------------h--cCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCe
Q 015919 169 ----------TLC-----------Q------------------V--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 207 (398)
Q Consensus 169 ----------~~~-----------~------------------~--~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~ 207 (398)
..+ . + ...+.+++|++|+..++..+.++++.++..+++.
T Consensus 173 ~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v 252 (329)
T 2woo_A 173 GLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDT 252 (329)
T ss_dssp TSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCC
Confidence 000 0 0 0134799999999999999999999999999999
Q ss_pred eEEEEccccccCC-Cc----eecccCCChHHHHHHHhCCCeEEecCCC
Q 015919 208 IAVVENMCHFDAD-GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIR 250 (398)
Q Consensus 208 ~~vV~N~~~~~~~-~~----~~~~~~~~~~~~~~~~~g~~~~~~ip~~ 250 (398)
.++|+|++.+... .. .....+.+.++++.+.++...+..+|..
T Consensus 253 ~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 253 HNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 9999999873211 00 0001223456677888865456777753
No 34
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.85 E-value=9.2e-22 Score=187.44 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=112.2
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCCcccCCcc-----------cccccCCCC-
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPEN-----------RLLEMNPEK- 105 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllIDlD~q~~~~~~~l~~~~-----------~~~~~~~~~- 105 (398)
+.+..+.|+|+|+||||||||+|+|||..|| +.|+||++||+|++.+ +..+++.+. .+.......
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~-l~~~~~~~~~~~~~~v~~~~~L~~~~id~~ 91 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN-LSDAFCQKFGKDARKVEGLPNLSCMEIDPE 91 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH-HHHHHTSCCCSSCEEETTEEEEEEEECCC-
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC-hHHHhccccCCCceeccCCCCceEEeeCHH
Confidence 3444567777888999999999999999999 8999999999998754 444444321 110000000
Q ss_pred ---Cceeee-------ccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccC------------CCCcEEEEcCCCCC
Q 015919 106 ---RTIIPT-------EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEW------------GELDYLVIDMPPGT 163 (398)
Q Consensus 106 ---~~i~~~-------~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~~yD~VIID~pp~~ 163 (398)
...... ...++..+... .....++..-...+.++++.+.+ ..||+|||||||+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg 167 (348)
T 3io3_A 92 AAMSDLQQQASQYNNDPNDPLKSMMSD----MTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTG 167 (348)
T ss_dssp --------------------------------------------------------------------CCEEEEECSSHH
T ss_pred HHHHHHHHHHHhhcccccccHhHHhHH----hhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCch
Confidence 000000 00011111000 00001111111234444444432 28999999999933
Q ss_pred Chhhhhhh---------------------------------------------------hhcCCCeEEEEeCCChhhHHH
Q 015919 164 GDIQLTLC---------------------------------------------------QVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 164 ~~~~~~~~---------------------------------------------------~~~a~d~viiv~~p~~~s~~~ 192 (398)
....+-.+ .-...+.+++|++|+..++..
T Consensus 168 ~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~e 247 (348)
T 3io3_A 168 HTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYE 247 (348)
T ss_dssp HHHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHH
Confidence 21110000 001136799999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEccccccC-C--Cc----eecccCCChHHHHHHHhCCCeEEecCCC
Q 015919 193 VAKGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIR 250 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~~~~~~-~--~~----~~~~~~~~~~~~~~~~~g~~~~~~ip~~ 250 (398)
+.++++.++..++++.++|+|++.... . .. ..+..+...++++.+.|+...+..+|..
T Consensus 248 a~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~ 312 (348)
T 3io3_A 248 TERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLL 312 (348)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCC
Confidence 999999999999999999999987643 1 00 0011233456777777765556666653
No 35
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.80 E-value=4.1e-19 Score=170.25 Aligned_cols=276 Identities=15% Similarity=0.136 Sum_probs=153.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec---
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF--- 121 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~--- 121 (398)
+.|.|+++||||||||+|+|||..||++|+||++||+ ++.+ +..+++.... ...... .++++.+..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~-l~~~~~~~~~--------~~~~~v-~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPV-LPLLLEQTLT--------PDPQQI-APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSH-HHHHHTSCCC--------SSCEEE-ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCC-hHHhhCCCCC--------CCcccc-cccccccccCHH
Confidence 4566788999999999999999999999999999999 8654 4444443310 000000 123333211
Q ss_pred ---------------------ccCCC---cccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh---------
Q 015919 122 ---------------------GFSGQ---GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 168 (398)
Q Consensus 122 ---------------------~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~--------- 168 (398)
+.... ......+..-...+..+.+...+..||+|||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 00000 011112211122233444333347899999999994321000
Q ss_pred --------------------------------------------------------hhhhhcCCCeEEEEeCCChhhHHH
Q 015919 169 --------------------------------------------------------TLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 169 --------------------------------------------------------~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
..+.-.....+++|++|+..++..
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 000000125789999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHH
Q 015919 193 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 272 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~ 272 (398)
+.+.++.+...++++.++|+|+ .+ ..+++.+.|+...+..+|.-..=
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~--~~------------~l~~i~~~F~~~~v~~vpl~~~e------------------- 277 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS--SQ------------TEGDLSAEFTPLSVTVVPDVTKG------------------- 277 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--CS------------CCCCCGGGSTTSCEEECCCCBTT-------------------
T ss_pred HHHHHHHHHHcCCCccEEEEcC--HH------------HHHHHHHhcCCCceEECCCCChh-------------------
Confidence 9999999999999999999999 11 23445556654456777753210
Q ss_pred HHHHHHHHHHHHHHHHHhhccccceeeeccCCcEEEEEecCCCe-eEEechhhhhcCCCCCccccCCCCcccccCCCCCC
Q 015919 273 ANTFQDLGVCVVQQCAKIRQQVSTAVIYDKSIKAIKVKVPQSDE-EFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPE 351 (398)
Q Consensus 273 ~~~~~~la~~i~~~i~~~~~~~~~~~~~~~~~~~l~v~~~d~~~-~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~ 351 (398)
++.++++.+ ....+.....+..+.+++....+.+..|.-.+ +..+.- .- ..--+.-....|.+.+-..=.
T Consensus 278 --~l~~l~~~l-~~p~~~~~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~----~g--deL~v~~g~~rR~i~LP~~L~ 348 (374)
T 3igf_A 278 --DWQPLIDAL-PNFVEQAEQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQ----YG--PEVTVEAGDQRRNIFLPPALS 348 (374)
T ss_dssp --BCHHHHHHC-CCHHHHHHHSCCSEEEETTTTEEEEECTTCCGGGCEEEE----ET--TEEEEEETTEEEEEECCTTTT
T ss_pred --HHHHHHHHh-cCccccccCCCCCEEEEeccEEEEEECCCCCHHHeEEEE----EC--CeEEEEECCEeecccCCHHHc
Confidence 233343333 11110011234455555556667777774332 111110 00 001111112233443333334
Q ss_pred CCccceEEecCCeeEEEEcCCCC
Q 015919 352 DIEPEEIRPMGNYAVSITWPDGF 374 (398)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~w~dgh 374 (398)
...+..+...++| |.|.|-+.|
T Consensus 349 ~~~v~~A~~~~~~-L~i~~~~~~ 370 (374)
T 3igf_A 349 GRPITGAKFQNNY-LIISFLEHH 370 (374)
T ss_dssp TCCEEEEEEETTE-EEEEECCC-
T ss_pred CCCccccEEECCE-EEEEEehhc
Confidence 5677788888875 999998766
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.76 E-value=2.2e-19 Score=183.84 Aligned_cols=209 Identities=18% Similarity=0.178 Sum_probs=121.8
Q ss_pred ccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc-ccc--ccCCC------CCce
Q 015919 38 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL--EMNPE------KRTI 108 (398)
Q Consensus 38 ~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~-~~~--~~~~~------~~~i 108 (398)
.++..++++|+|.++||||||||+|+|||..|+++|+||++||+||+++ +..+++... .+. ..+.. ...+
T Consensus 320 ~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~-l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v 398 (589)
T 1ihu_A 320 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAH-LSMTLNGSLNNLQVSRIDPHEETERYRQHV 398 (589)
T ss_dssp HHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHH
T ss_pred hhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCccc-HhHHhcccCCCceeeecchHHHHHHHHHHH
Confidence 3345678899999999999999999999999999999999999999965 444444321 100 00000 0000
Q ss_pred eeeccCCeEEEecccCCCcccccCCcc--HHHHHHHHHhhccCCCCcEEEEcCCCCCChh--------------------
Q 015919 109 IPTEYLGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDI-------------------- 166 (398)
Q Consensus 109 ~~~~~~~l~vlp~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-------------------- 166 (398)
......+++ +..... -...+..+. ....++.+.+.+.+..||||||||||+....
T Consensus 399 ~~~~~~~l~--~~~~~~-~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~ 475 (589)
T 1ihu_A 399 LETKGKELD--EAGKRL-LEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEK 475 (589)
T ss_dssp HHHHHTTCC--HHHHHH-HHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC--------------
T ss_pred HHhhhccCC--hhhHHH-HHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccc
Confidence 010001111 000000 000111111 1124555555444467999999999984211
Q ss_pred --hhhhhh-h--cCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCcee-----cccCCChHHHHH
Q 015919 167 --QLTLCQ-V--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY-----YPFGRGSGSQVV 236 (398)
Q Consensus 167 --~~~~~~-~--~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~-----~~~~~~~~~~~~ 236 (398)
...... + ..++.+++|++|+..++..+.++++.++..+++..++|+|++......... .....+.++++.
T Consensus 476 ~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 555 (589)
T 1ihu_A 476 GHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVK 555 (589)
T ss_dssp ----CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 000000 1 145889999999999999999999999999999999999998754321100 011223456667
Q ss_pred HHhCCCeEEecCCCh
Q 015919 237 QQFGIPHLFDLPIRP 251 (398)
Q Consensus 237 ~~~g~~~~~~ip~~~ 251 (398)
+.|+.+ +..+|+.+
T Consensus 556 ~~~~~~-v~~iP~~~ 569 (589)
T 1ihu_A 556 RQHASR-VALVPVLA 569 (589)
T ss_dssp TTTCSS-EEEEECCS
T ss_pred HhcCCc-EEEccCCC
Confidence 777754 47777643
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.75 E-value=6.7e-19 Score=180.30 Aligned_cols=165 Identities=20% Similarity=0.181 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
+.|.|+++||||||||+|+|||..||++|+||++||+|++ +++..+++.+.... .......+++.....+..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~-------~~~v~~~~~l~~~~~d~~ 79 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNT-------IQAIASVPGLSALEIDPQ 79 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSS-------CEECTTSTTEEEEECCHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCC-------CceeccchhhhhccCCHH
Confidence 3455788999999999999999999999999999999996 66666666542100 000001123332221100
Q ss_pred ----------------CCc-------ccccCCc-----cHHHHHHHHHh--hccCCCCcEEEEcCCCCCChhhhhh----
Q 015919 125 ----------------GQG-------RAIMRGP-----MVSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLTL---- 170 (398)
Q Consensus 125 ----------------~~~-------~~~~~~~-----~~~~~l~~ll~--~~~~~~yD~VIID~pp~~~~~~~~~---- 170 (398)
... ...+... .....+.+++. .+ +..||+|||||||+.....+..
T Consensus 80 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~~~~lrll~lP~~ 158 (589)
T 1ihu_A 80 AAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTGHTIRLLQLPGA 158 (589)
T ss_dssp HHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCCHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCchhHHHHHHhHHH
Confidence 000 0000100 01223445554 22 3689999999999633211000
Q ss_pred -------------------------------hh-hc--CCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015919 171 -------------------------------CQ-VV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 171 -------------------------------~~-~~--a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
.. +. ..+.+++|++|+..++..+.+.++.++..+.+..++|+|++.
T Consensus 159 ~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 159 WSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp GTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 00 01 123699999999999999999999999999999999999976
Q ss_pred cc
Q 015919 217 FD 218 (398)
Q Consensus 217 ~~ 218 (398)
..
T Consensus 239 ~~ 240 (589)
T 1ihu_A 239 PK 240 (589)
T ss_dssp CG
T ss_pred Cc
Confidence 54
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.66 E-value=5.6e-16 Score=151.69 Aligned_cols=167 Identities=20% Similarity=0.235 Sum_probs=108.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
+.+++|+|+ ++||+||||++.+||.+|+++ |+||++||+|+|.+.....+. ......|++++|
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~---------------~~~~~~~l~v~~ 161 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE---------------TLAEQVGVDFFP 161 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH---------------HHHHHHTCEECC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH---------------hhcccCCeeEEe
Confidence 457899998 699999999999999999998 999999999999875432110 011235788888
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhhh----hhhcCCCeEEEEeCCChhhHHHHH
Q 015919 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLTL----CQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~~----~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
++... ....++...+..+.+..||||||||||..+. ..... ......+.+++|+.+... .++.
T Consensus 162 ~~~~~---------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~~~~ 230 (433)
T 2xxa_A 162 SDVGQ---------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAA 230 (433)
T ss_dssp CCSSS---------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--TTHH
T ss_pred CCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--HHHH
Confidence 65321 1223345555544336899999999987653 22211 113356788888887532 2333
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE
Q 015919 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 244 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 244 (398)
...+.+.. +.++.++|+|++....+. .....+.+.++.|+.
T Consensus 231 ~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 231 NTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIK 271 (433)
T ss_dssp HHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEE
T ss_pred HHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeE
Confidence 33343332 356678999997654332 345577888887644
No 39
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.59 E-value=5.7e-15 Score=137.71 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=108.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
+++|++. +++|+||||++.+||..++.+|.+|+++|+|++.+.....+.. .....|+++++.+.
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~---------------~~~~~~v~v~~~~~ 161 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ---------------LGQQIGVPVYGEPG 161 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH---------------HHHHHTCCEECCTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH---------------HhccCCeEEEecCC
Confidence 7888887 7999999999999999999999999999999998654321110 01124677777431
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCC--hh--hhh----hhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI--QLT----LCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~--~~--~~~----~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
.......+.+.++.+.++.||||||||||... .. ... ......+|.+++|+.+.. . .+...
T Consensus 162 ---------~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g-~~~~~ 230 (297)
T 1j8m_F 162 ---------EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI-G-QKAYD 230 (297)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-GGHHH
T ss_pred ---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc-h-HHHHH
Confidence 11223344555555434789999999999877 21 110 012346789999988764 2 33333
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.++.+.. ..++.++|+|+++...+. .....+...++.|+.+
T Consensus 231 ~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 231 LASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp HHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred HHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 3444443 467789999997654322 2345677777877544
No 40
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.54 E-value=3.7e-14 Score=132.24 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|++. +++|+||||++.+||..++..|.+|+++|+|++.+.....+.. .....|++++|++
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~---------------~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL---------------LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH---------------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH---------------hcccCCeEEEEcC
Confidence 57899998 7999999999999999999999999999999987544321110 0122478888754
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhhh----hhhcCCCeEEEEeCCChhhHHHHHHH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLTL----CQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~~----~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
... ....+++..++.+....||+|||||||..+. ..... ......+.+++|+.+.. . .++...
T Consensus 161 ~~~---------~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTC---------CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCC---------CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 321 1112234444443226899999999997653 11211 11124678888888663 2 233333
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
++.+.. ..++.++|+|+++...+. .....+...++.|+.+
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 333332 356789999997655433 2455677788887554
No 41
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.53 E-value=1.2e-14 Score=130.37 Aligned_cols=196 Identities=8% Similarity=0.006 Sum_probs=119.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc-cCCc-ccccccCCCCCceeeeccCCeEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPE-NRLLEMNPEKRTIIPTEYLGVKLV 119 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~-l~~~-~~~~~~~~~~~~i~~~~~~~l~vl 119 (398)
+.|+.|.|++...|+||||++++|+..|+++|+||...- |........ -+.. .+......... .+....+...+
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~~~~~~D~~~~~~~~~--~~~~~~~~~~~ 77 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSELCEDVESILNAYKHK--FTAAEINLISF 77 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSSSBHHHHHHHHHTTTS--SCHHHHCSEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCCCCChHHHHHHhcCCC--CChhhEEEEEE
Confidence 457999999999999999999999999999999999953 321111100 0000 00000000000 00001122333
Q ss_pred ecccCCCcccccC-CccHHHHHHHHHhh-ccCCCCcEEEEcCCCCCChhhhh---hhhh--cCCCeEEEEeCCChhhHHH
Q 015919 120 SFGFSGQGRAIMR-GPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQLT---LCQV--VPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 120 p~~~~~~~~~~~~-~~~~~~~l~~ll~~-~~~~~yD~VIID~pp~~~~~~~~---~~~~--~a~d~viiv~~p~~~s~~~ 192 (398)
..+.......... .......+.+.+.. +. ..||+||||+++|+...... .+.+ ....-+++|+.+...++..
T Consensus 78 ~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 78 NQAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINH 156 (228)
T ss_dssp SSSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHH
Confidence 3221111111111 11123345555555 43 79999999999877532110 0001 0124589999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecC
Q 015919 193 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 248 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip 248 (398)
+...++.+...+.++.|+|+|++..+.. ......+.+++.+|.++++.||
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~~~~~------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCNDSNIK------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCTTCS------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEECcCCcch------hhHHHHHHHHHhhCCCEEEECC
Confidence 9999999988999999999999754321 1224677888889999999999
No 42
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.53 E-value=9.5e-14 Score=130.76 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=105.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|+|+|. +|+||||++.+||..++..|.+|+++|+|++.+....-+. .+.. .....+++++|..
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~---~~~~---------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE---EWIK---------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHH---HHHT---------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---HHHh---------ccccCCceEEeCC
Confidence 4789999976 9999999999999999999999999999997643210000 0000 0013578888644
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh--hhhhhh----h------cCCCeEEEEeCCChhhH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLTLCQ----V------VPLTAAVIVTTPQKLAF 190 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~--~~~~~~----~------~a~d~viiv~~p~~~s~ 190 (398)
...... .....+.+.... ++.||||||||||..... .+..+. + ...|.+++|+.+.. ..
T Consensus 171 ~~~~~p-------~~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 171 KLNADP-------ASVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp STTCCH-------HHHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCCCH-------HHHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 321111 111222222222 379999999999987642 111100 0 13678888887763 33
Q ss_pred HHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 191 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
..+... +.+.. ..++.|+|+|++....+. .....+...++.|+.+
T Consensus 242 ~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~ 286 (320)
T 1zu4_A 242 NGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKM 286 (320)
T ss_dssp HHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEE
Confidence 333333 22222 356789999997654433 3566778888887543
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.48 E-value=2e-13 Score=132.65 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=107.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|+|+ +++|+||||++.+||..++.+|.+|+++|+|++.+.....+... ....|+++++.+
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---------------~~~~gv~v~~~~ 160 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---------------GEKVGVPVLEVM 160 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---------------HHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---------------cccCCccEEecC
Confidence 46899998 78999999999999999999999999999999876543221100 122478888754
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh--hhh----hhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~--~~~----~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
... ....++...++.+....||+|||||||..... ... .......+.+++|+++.. . .++...
T Consensus 161 ~~~---------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-g-q~av~~ 229 (425)
T 2ffh_A 161 DGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (425)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-THHHHH
T ss_pred CCC---------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-h-HHHHHH
Confidence 321 11233344554442378999999999977531 111 111224688888888753 2 333333
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
++.+.. ..++.++|+|+++...+. .....+...+|.|+.+
T Consensus 230 a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp HHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 333332 355689999997554433 2455677788887543
No 44
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=2e-14 Score=131.72 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
+..++++.++||||||||++.+||..|+ +|+||++||+|+|++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 4578899999999999999999999999 999999999999987764
No 45
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.39 E-value=2.1e-12 Score=117.09 Aligned_cols=195 Identities=15% Similarity=0.086 Sum_probs=116.8
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEe
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
.+.|+.|.|++...|||||+++..|+.+|+++|+||..+-- ....... -+.+........... .. .+...+.
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP--v~~g~~~-~~~D~~~~~~~~g~~---~~--~~~~~~~ 94 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKP--VQTGTAR-GDDDLAEVGRLAGVT---QL--AGLARYP 94 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE--EECCGGG-TCCHHHHHHHHHCCC---EE--EEEEECS
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee--eecCCCC-CCHHHHHHHHHcCCC---CC--CCCeeEC
Confidence 35679999999999999999999999999999999999752 1111000 000000000000000 00 0112221
Q ss_pred cccCCCcccccCC--ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCChhhHHH
Q 015919 121 FGFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 121 ~~~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~------~~~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
.+..........+ ......+.+.++.+. ..||+||||+++|+... ......-....-+|+|+.+...++..
T Consensus 95 ~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 95 QPMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNH 173 (251)
T ss_dssp SSSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHH
T ss_pred CCCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHH
Confidence 1111000011111 112344666666554 79999999999987421 11111111236789999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015919 193 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
+...++.+...+.++.|+|+|++..+... ......+.+++. .|+++.||++.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~-----~~~~~~~~le~~--vpvLG~iP~~~ 225 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGL-----VAASNRSALARI--AMVRAALPAGA 225 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCH-----HHHHHHHHHHHH--SCEEEEEETTG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhh-----hhhhHHHHHHHh--CCEEEEeeCCC
Confidence 99999988888999999999997433211 011234455544 89999999876
No 46
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.38 E-value=1.7e-12 Score=116.95 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=102.4
Q ss_pred ccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccccccc----CCCCCceeee
Q 015919 36 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTIIPT 111 (398)
Q Consensus 36 ~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~----~~~~~~i~~~ 111 (398)
-++++.+|++.|.|++...|||||++++.|+..|+++|++|..+- |........-+...+.... ......+...
T Consensus 13 ~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~ 90 (242)
T 3qxc_A 13 GRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAINHSSDAHLFLQDNRLLDRSLTLK 90 (242)
T ss_dssp ------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHH
T ss_pred hhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCCCCchHHHHHHHHHHHhCCCChH
Confidence 367888999999999999999999999999999999999999975 3221111000001110000 0000000000
Q ss_pred ccCCeEEEecccCCCccccc-CC--ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEE
Q 015919 112 EYLGVKLVSFGFSGQGRAIM-RG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIV 182 (398)
Q Consensus 112 ~~~~l~vlp~~~~~~~~~~~-~~--~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv 182 (398)
.. +...+..+......... .. ......+.+.++.+. ..||+||||+++|+.... ...+.. ...-+++|
T Consensus 91 ~~-~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~-l~~pVILV 167 (242)
T 3qxc_A 91 DI-SFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALK-LKAKMLLI 167 (242)
T ss_dssp HH-CCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHH-HTCEEEEE
T ss_pred He-eeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHH-cCCCEEEE
Confidence 00 11222111110000000 11 112334555555553 799999999998886421 111111 12458999
Q ss_pred eCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 183 TTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 183 ~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+...++..+...++.++..+++ .|+|+|++..+
T Consensus 168 ~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 168 SHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp ECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred EcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 999999999999999999999999 99999997544
No 47
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.37 E-value=7.3e-12 Score=122.46 Aligned_cols=166 Identities=17% Similarity=0.229 Sum_probs=103.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|+|++ .+||||||++.+||..++++|+||+++|+|+|.+.....+.. .....|+.+++.+
T Consensus 98 ~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~ 161 (432)
T 2v3c_C 98 KQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDE 161 (432)
T ss_dssp SCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCS
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecC
Confidence 357899886 599999999999999999999999999999998765322110 0112467777754
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh--hh----hhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~--~~----~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
....+. ...+...+..+ ..||+||||||+...... .. ...+...|.+++|+.+.... ++...
T Consensus 162 ~~~~dp--------~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~ 229 (432)
T 2v3c_C 162 TRTKSP--------VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ 229 (432)
T ss_dssp SSCCSS--------STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH
T ss_pred CCCCCH--------HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH
Confidence 111110 01123444443 689999999999775311 11 11122468888888764321 22233
Q ss_pred HHHHhccCC-CeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 197 VRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~-~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+.+.. .. ++.++|+|+++...+. .....+...++.++.+
T Consensus 230 ~~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 230 AKAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp HHHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred HHHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 333332 35 6689999997654322 1334577788877543
No 48
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.35 E-value=7.1e-12 Score=122.00 Aligned_cols=167 Identities=15% Similarity=0.194 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|.+++. +|+||||++.+||.+|+++|+||+++|+|++.+....-+.. .....++.+.+..
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~---------------~~~~~gvpv~~~~ 162 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQ---------------LLDRYHIEVFGNP 162 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHH---------------HHGGGTCEEECCT
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHH---------------HHHhcCCcEEecC
Confidence 4688888865 99999999999999999999999999999987542111100 0111244444322
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh--h----hhhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~--~----~~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
.. ......+...+.......||+|||||++...... . ........|.+++|+.+... .++...
T Consensus 163 ~~---------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~ 231 (443)
T 3dm5_A 163 QE---------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQ 231 (443)
T ss_dssp TC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHH
T ss_pred CC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHH
Confidence 11 1223344444544434679999999998654211 1 11112346888888887542 222333
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+.+.. ..+..++|+|+++...+. .....+...++.|+.+
T Consensus 232 a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~f 271 (443)
T 3dm5_A 232 ALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIKF 271 (443)
T ss_dssp HHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEEE
T ss_pred HHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 344432 345679999997654432 2345566667877643
No 49
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.33 E-value=7.3e-12 Score=124.33 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+.+++|+|+ +.+||||||++.+||..|+++|++|++||+|++.+.....+.... ...++.+++.
T Consensus 99 ~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~---------------~~~~i~v~~~ 162 (504)
T 2j37_W 99 GKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA---------------TKARIPFYGS 162 (504)
T ss_dssp S--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHH---------------HHHTCCEEEC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHh---------------hccCceEEcc
Confidence 346789998 558999999999999999999999999999998765432221100 1124555553
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh--hh-h---hhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-T---LCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~--~~-~---~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
... .....++...+..+.+..||+||||||+..... .. . .......|.+++|+.+.... . ...
T Consensus 163 ~~~---------~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~-~~~ 231 (504)
T 2j37_W 163 YTE---------MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A-CEA 231 (504)
T ss_dssp CCC---------SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-HHH
T ss_pred CCC---------CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-HHH
Confidence 211 112223334444433478999999999977521 11 1 11122568888898875431 1 222
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 244 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 244 (398)
..+.+... .++.++|+|+++...+. .....+.+.++.|+.
T Consensus 232 ~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 232 QAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp HHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred HHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 33333332 45568999997654322 234456778887753
No 50
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.22 E-value=4.9e-11 Score=116.07 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|.++ +.+|+||||++.+||..|+.+|++|+++|+|++.+.....+.. .....++.+.+..
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~---------------~~~~~gv~~~~~~ 159 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQ---------------LGNQIGVQVYGEP 159 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHH---------------HHHTTTCCEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHH---------------HHHhcCCceeecc
Confidence 46788877 7799999999999999999999999999999875432110000 0011133333221
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCC----hhh----hhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG----DIQ----LTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~----~~~----~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
. ...........++.+.+..||+||||||+... ... .........+.+++|+.+... .++.
T Consensus 160 ~---------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~ 228 (433)
T 3kl4_A 160 N---------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAY 228 (433)
T ss_dssp T---------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGH
T ss_pred c---------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHH
Confidence 1 11223344555555545799999999998544 111 111112244788888877542 2233
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
...+.+.+ .....++|+|+++...+. +..-.+....+.|+.+
T Consensus 229 ~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~f 270 (433)
T 3kl4_A 229 DLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIKF 270 (433)
T ss_dssp HHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEEE
T ss_pred HHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEEE
Confidence 33344442 234578999997655433 2445566667877543
No 51
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.21 E-value=2.4e-10 Score=106.72 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=101.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.++++|++++. +|+||||++.+||..++..|.+|+++|+|++.+.... .+.. .....++.+++.
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~~---------~~~~~gl~~~~~ 165 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLKI---------WGERVGATVISH 165 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHHH---------HHHHHTCEEECC
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHHH---------HHHHcCCcEEec
Confidence 45789999986 9999999999999999999999999999987532110 0000 001125566653
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh--h----hhhh------cCCCeEEEEeCCChhh
Q 015919 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--T----LCQV------VPLTAAVIVTTPQKLA 189 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~--~----~~~~------~a~d~viiv~~p~~~s 189 (398)
... ......+...+.......||+||||+|+....... . .... ...+.+++|+... ..
T Consensus 166 ~s~---------~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~ 235 (306)
T 1vma_A 166 SEG---------ADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TG 235 (306)
T ss_dssp STT---------CCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GH
T ss_pred CCc---------cCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CC
Confidence 211 11122212222221137899999999986432110 0 0000 1257778888765 23
Q ss_pred HHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015919 190 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
...+... +.+.+ ..++.++|+|+++...+. .....+...++.|+.+.
T Consensus 236 ~~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~i 282 (306)
T 1vma_A 236 QNGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKFI 282 (306)
T ss_dssp HHHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEEE
Confidence 3333333 33332 256689999997655443 35778888889886654
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.09 E-value=5.1e-10 Score=104.17 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.+++|+|++. +|+||||++.+||..++. +|++|+++|+|++.+.....+... . ...++.+.+.
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~---~------------~~~gl~~~~~ 167 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY---A------------ELLQAPLEVC 167 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH---H------------TTTTCCCCBC
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH---H------------HhcCCCeEec
Confidence 4689999865 899999999999999995 899999999999754432111000 0 0011211110
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh---hhhhhc---CCCeEEEEeCCChhhHHHHHH
Q 015919 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV---PLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~---~~~~~~---a~d~viiv~~p~~~s~~~~~~ 195 (398)
. . ...++..+..+ .+||+|||||++....... ....+. ..+.+++++... .....+.+
T Consensus 168 ~---------~----~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~ 231 (296)
T 2px0_A 168 Y---------T----KEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKH 231 (296)
T ss_dssp S---------S----HHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHH
T ss_pred C---------C----HHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHH
Confidence 0 0 01234444433 6899999999886543211 111122 245556666333 23344444
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
..+.+. ..+..++|+|+++...+. .....+...++.|+.+
T Consensus 232 ~~~~~~--~l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 232 IVKRFS--SVPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp HTTTTS--SSCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHHh--cCCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 444443 245678999997544332 2455666677776543
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.96 E-value=1.8e-09 Score=103.24 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc-cCCcccccccCCCCCceeeeccCCeEEEe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~-l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
+...+|+++ +++|+||||++.+|+..++..|++|+++|.||+.+.+... ++.... .......+++.+.+
T Consensus 77 ~~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~---------~~~~~~~~~~~i~~ 146 (355)
T 3p32_A 77 GNAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTR---------MARLAVHPNAYIRP 146 (355)
T ss_dssp CCSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEEC
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhh---------HHhhccCCCeeEEE
Confidence 345677776 6899999999999999999999999999999987643211 111000 00011235667666
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHH
Q 015919 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF 200 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l 200 (398)
.+..... .......+..+..+....||++|||||+ ++...... ...+|.+++|+.++...-. ..+...+
T Consensus 147 ~~~~~~~------~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~ 215 (355)
T 3p32_A 147 SPTSGTL------GGVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV 215 (355)
T ss_dssp CC--CCH------HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS
T ss_pred CCCCccc------cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH
Confidence 4322110 0111222222233334789999999985 55444433 3577999999988654211 0000000
Q ss_pred hccCCCeeEEEEccccc
Q 015919 201 SKLKVPCIAVVENMCHF 217 (398)
Q Consensus 201 ~~~~~~~~~vV~N~~~~ 217 (398)
... ...+|+|+++.
T Consensus 216 --~~~-p~ivVlNK~Dl 229 (355)
T 3p32_A 216 --LEL-ADIVVVNKADG 229 (355)
T ss_dssp --GGG-CSEEEEECCCG
T ss_pred --hhc-CCEEEEECCCC
Confidence 112 35678899764
No 54
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.94 E-value=1.1e-09 Score=96.73 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
.++...|.++||||||||++.++|..++++|++|+++|+|+|++...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~ 50 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAET 50 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhH
Confidence 46778889999999999999999999999999999999999986543
No 55
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.51 E-value=1e-06 Score=83.58 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc-ccCCcccccccCCCCCceeeeccCCeEEEe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
..+.+|++. +++|+||||+..+|+..++..|.+|.++|.|++.+.+.. +++........ ...++..+.+
T Consensus 54 ~~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~ 123 (341)
T 2p67_A 54 GNTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRP 123 (341)
T ss_dssp SCSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEE
T ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeec
Confidence 456788887 599999999999999999999999999999998654321 12211110000 0012222222
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015919 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
..... ..+......+..+. .+.+..|+++|||||+-.... ... ...+|.+++|+.++.
T Consensus 124 ~~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~~~~-~~~--~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 124 VPSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVGVGQSE-TEV--ARMVDCFISLQIAGG 181 (341)
T ss_dssp ECC----------CHHHHHHHHHH-HHHHTTCSEEEEEEECCTTHH-HHH--HTTCSEEEEEECC--
T ss_pred Ccccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCCccchH-HHH--HHhCCEEEEEEeCCc
Confidence 11100 00111112222222 111378999999998744432 222 457899999999864
No 56
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.18 E-value=5.8e-06 Score=87.30 Aligned_cols=88 Identities=11% Similarity=0.015 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCcee
Q 015919 151 ELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~ 224 (398)
.||++||....|+... ....+... ---+|+|+.....++..+...++.+...+.++.|+|+|+.. .
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l-~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~--~----- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPF-RLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG--L----- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGG-CCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS--S-----
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc--h-----
Confidence 7999999997765421 11111111 13478999999889988888888888889999999999753 1
Q ss_pred cccCCChHHHHHHHh----CCCeEEecCCCh
Q 015919 225 YPFGRGSGSQVVQQF----GIPHLFDLPIRP 251 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~----g~~~~~~ip~~~ 251 (398)
...+.+.+.+ ++++++.+|..+
T Consensus 273 -----~~~~~l~~~l~~~~~v~vLg~lP~~~ 298 (831)
T 4a0g_A 273 -----VNEVPLTSYLRNKVPVLVLPPVPKDP 298 (831)
T ss_dssp -----CTHHHHHHHTTTSSCEEEECCCCCCT
T ss_pred -----hHHHHHHHHHHhCCCceeeCCCCCCC
Confidence 1334444443 444567777754
No 57
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.16 E-value=3.1e-05 Score=76.06 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+.+|+++ +..|+||||+...||..+...|.+|++.+.|.+...... .+... ....++.+++..
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~~~---------~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQVW---------GQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHHHH---------HHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHHHH---------HHhcCceEEecc
Confidence 47899998 558999999999999999988899999998875321000 00000 000123334321
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhh---hhh---------cCCCeEEEEeCCChhhH
Q 015919 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL---CQV---------VPLTAAVIVTTPQKLAF 190 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~---~~~---------~a~d~viiv~~p~~~s~ 190 (398)
... .....+...+.......||+|||||.+......... ..+ .+-+.++++..+...
T Consensus 356 ~~~---------~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-- 424 (503)
T 2yhs_A 356 TGA---------DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-- 424 (503)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--
T ss_pred cCc---------CHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--
Confidence 110 111112222222113789999999998754211100 000 113467777776532
Q ss_pred HHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015919 191 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+....++.+.. ...+.++|+++.+...++ +..-.+...++.++.+
T Consensus 425 q~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 425 QNAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRY 470 (503)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 222233333332 123467899996644333 4667778888887655
No 58
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.13 E-value=2.7e-05 Score=73.10 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
..+.+|++.+ ..|+||||+...||..+...|.+|++++.|.+.......+ . .....-++.+++.
T Consensus 127 ~~g~vi~lvG-~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql------~---------~~~~~~gv~~v~q 190 (328)
T 3e70_C 127 EKPYVIMFVG-FNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQL------E---------EHAKRIGVKVIKH 190 (328)
T ss_dssp CSSEEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHH------H---------HHHHHTTCEEECC
T ss_pred CCCeEEEEEC-CCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHH------H---------HHHHHcCceEEec
Confidence 4578999985 4899999999999999999999999999998653211000 0 0001123444432
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh--hh----hhhhcCCCeEEEEeCCChhhHHHHHH
Q 015919 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----LCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~--~~----~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
...... .....+.+.... ...||++++|+++...... .. .......|..+++.++... .++..
T Consensus 191 ~~~~~p--------~~~v~e~l~~~~-~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~ 259 (328)
T 3e70_C 191 SYGADP--------AAVAYDAIQHAK-ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVE 259 (328)
T ss_dssp CTTCCH--------HHHHHHHHHHHH-HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHH
T ss_pred cccCCH--------HHHHHHHHHHHH-hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHH
Confidence 211110 011112211111 2579999999988654211 11 1112345778878775443 23333
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015919 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
.++.+.+ .....++|+|+.+...+. ...-.+...++.|+.+.
T Consensus 260 ~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 260 QARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILFV 301 (328)
T ss_dssp HHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEEE
Confidence 3343332 134468899996554433 24556777788876553
No 59
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.01 E-value=5.3e-05 Score=71.10 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
++.|.+++.--+|||||++..|...|.++|.++..+=... +..+. ... + +|.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq----tg~~~-------~~~------------g---i~~D- 204 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ----TGVML-------EGD------------G---VALD- 204 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH----HHHHH-------HSC------------S---CCGG-
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc----hhhhh-------hcC------------C---cchh-
Confidence 7899999999999999999999999999999998832110 00000 000 0 0000
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh----hhhhhhhcCCCeEEEEeCCChhhH---------
Q 015919 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAF--------- 190 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~----~~~~~~~~a~d~viiv~~p~~~s~--------- 190 (398)
..........++.+...+ +++||++||-..+|+... +...+.-...+.+|++..|....+
T Consensus 205 ------av~~df~aG~ve~~~~~~-~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 205 ------AVRVDFAAGAVEQMVMRY-GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp ------GSBHHHHHHHHHHHHHHH-TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred ------HHHHHHHhhhHHHHHHHh-ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 000001112333444433 368999999988776532 233333445688999999976666
Q ss_pred --HHHHHHHHHHhc-----cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCC
Q 015919 191 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 249 (398)
Q Consensus 191 --~~~~~~~~~l~~-----~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~ 249 (398)
.....+++.+.. .+.++.|+++|....+.. ..++..+.+++.+|.|.+..+.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~------~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEY------AAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH------HHHHHHHHHHHHHCSCEECHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCEEEEecC
Confidence 777777777755 567899999998544331 23357889999999987766544
No 60
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.80 E-value=0.0001 Score=76.32 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..|++.|||||+...........+..+|.+++|+.+.......+...++.+...+++.+ +|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 56999999999865432222223557899999999976655566667777777777754 678997643321 12
Q ss_pred ChHHHHHHHhCCCeE-EecCC
Q 015919 230 GSGSQVVQQFGIPHL-FDLPI 249 (398)
Q Consensus 230 ~~~~~~~~~~g~~~~-~~ip~ 249 (398)
...+++.+.++...+ ..+|.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi 173 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAI 173 (704)
T ss_pred HHHHHHHHHhCCCceeEEccc
Confidence 467778888876533 33553
No 61
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.76 E-value=0.00067 Score=62.87 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+.+|+++ +..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 57899999 5699999999999999999888999999999864
No 62
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.69 E-value=3.6e-05 Score=74.22 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCCC---CChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc
Q 015919 42 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 95 (398)
Q Consensus 42 ~~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~ 95 (398)
+..|+|.|+|... |.||||+++|||..||+.|+||+++ ...+++...|+..
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGik 108 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIK 108 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCC
Confidence 4579999999999 9999999999999999999999998 6667776665543
No 63
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.67 E-value=6.1e-05 Score=63.49 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
++|++|.|.+. .|+||||++..|+..|..+|++|.++..|+..
T Consensus 2 ~~~~~i~i~G~-sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 2 NAMNVWQVVGY-KHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp --CCEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 35789999875 49999999999999999999999999999864
No 64
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.55 E-value=0.00028 Score=70.65 Aligned_cols=88 Identities=14% Similarity=0.013 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..+.+.|+|||+-..........+..+|.+++|+.+...-.......++.+...+++ +.+++|+++...... .
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~------~ 152 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP------M 152 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH------H
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH------H
Confidence 578899999998543222222225678999999998765444556667777777777 567889976433211 1
Q ss_pred ChHHHHHHHhCCCeE
Q 015919 230 GSGSQVVQQFGIPHL 244 (398)
Q Consensus 230 ~~~~~~~~~~g~~~~ 244 (398)
+..+++++.++.+..
T Consensus 153 ~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 153 ELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHhCCCcc
Confidence 357788888886543
No 65
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.53 E-value=0.0003 Score=60.53 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+.++.+ .++| .||||.|..+|...+.+|+||+++=+..
T Consensus 27 ~~g~i~v~-tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVF-TGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEE-ESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEE-CCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 34555555 4887 9999999999999999999999997776
No 66
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=97.44 E-value=5.5e-05 Score=58.06 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=30.4
Q ss_pred CccceEEec-CCeeEEEEcCCCCcccCChHHHHhhhh
Q 015919 353 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTMER 388 (398)
Q Consensus 353 ~~~~~~~~~-~~~~~~i~w~dgh~s~y~~~~L~~~~~ 388 (398)
..|+++.+. ++..|+|.|+|||.+.|++.|||..|.
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~c~ 43 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHTSRLTFEHLRVECP 43 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCEEEEEHHHHHHTCC
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCEEEECHHHHHhhCC
Confidence 357788876 456799999999999999999999954
No 67
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.31 E-value=0.0031 Score=59.64 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 87 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~ 87 (398)
...+|+++ +..|+||||+.-.|+..+...|.+|.++-.||+...
T Consensus 73 ~~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 73 LAFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 35677777 889999999999999999988999999999997543
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.11 E-value=0.0094 Score=50.35 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCcee
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~ 224 (398)
..+++.|+|+|+...........+..+|.++++...+ ..++..+...++.+... +.+ +.+|.|+++...+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~--- 142 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRT--- 142 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCccc---
Confidence 3577999999875432222112244578888887764 44555665555555432 344 56888997643321
Q ss_pred cccCCChHHHHHHHhCCC
Q 015919 225 YPFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~~ 242 (398)
...+...++.+.++.+
T Consensus 143 --~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 143 --VDTKQAHELAKSYGIP 158 (190)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --CCHHHHHHHHHHcCCe
Confidence 1223455666666643
No 69
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.03 E-value=0.0011 Score=63.08 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.|+ +..|+||||++.++|..+++.|.+|++||++..
T Consensus 74 G~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5677775 678999999999999999999999999999863
No 70
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.99 E-value=0.0053 Score=59.19 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=48.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++|+.++..........+..+...+++.+.+++|+++..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 567899999976433222222234568999999998765555666777777778888677889997643
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.91 E-value=0.018 Score=48.62 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceecc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~ 226 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+.... ...+.+|.|+++..... .
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~ 144 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER----V 144 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc----C
Confidence 3567899999874332222222245679999998874 445566666666665542 23467888997643311 1
Q ss_pred cCCChHHHHHHHhCC
Q 015919 227 FGRGSGSQVVQQFGI 241 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~ 241 (398)
...+..+.+.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 145 VPAEDGRRLADDLGF 159 (189)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345566666664
No 72
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.84 E-value=0.0038 Score=64.52 Aligned_cols=86 Identities=16% Similarity=0.035 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..+.+.|+|||+...........+..+|.+++|+.+...........+..+...+.+.+ +|+|+++..... ..
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~------~~ 147 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD------LW 147 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------HH
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC------HH
Confidence 56889999999865533222223556899999999876554555666667777777754 678997643321 11
Q ss_pred ChHHHHHHHhCCC
Q 015919 230 GSGSQVVQQFGIP 242 (398)
Q Consensus 230 ~~~~~~~~~~g~~ 242 (398)
...+++.+.++..
T Consensus 148 ~~~~~l~~~l~~~ 160 (691)
T 1dar_A 148 LVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567777777754
No 73
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.77 E-value=0.0012 Score=66.36 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015919 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
|++|-+=|||||+-.+........+.++|.+++|+.+..-=-..+..+++.+.+.+++++ +++|+++.....-
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad~------ 169 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREALHP------ 169 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCCCH------
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhcch------
Confidence 578889999999865543333333668899999999877666788899999999999975 5669965433211
Q ss_pred CChHHHHHHHhCCCeE
Q 015919 229 RGSGSQVVQQFGIPHL 244 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~ 244 (398)
...++++.+.++...+
T Consensus 170 ~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 LDVMADIEQHLQIECA 185 (548)
T ss_dssp HHHHHHHHHHHTSEEE
T ss_pred hHhhhhhhhhcCCceE
Confidence 1467889999986543
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.0019 Score=55.01 Aligned_cols=40 Identities=35% Similarity=0.404 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++++|.+. +..|+||||++..||..|...|.+|.++|.|.
T Consensus 12 ~~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 35666665 88899999999999999999999999999775
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.74 E-value=0.018 Score=46.93 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCcee
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~ 224 (398)
..+++.|+|+|+...........+..+|.++++...+ ..++..+...++.+... +.+ +.+|.|+++...+.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc---
Confidence 4577899999985432221111234568888888875 34445555555554432 344 56888997643321
Q ss_pred cccCCChHHHHHHHhCCC
Q 015919 225 YPFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~~ 242 (398)
...+..+++.+.++.+
T Consensus 125 --~~~~~~~~~~~~~~~~ 140 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIP 140 (166)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --cCHHHHHHHHHHcCCe
Confidence 1223456666666653
No 76
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.71 E-value=0.00095 Score=66.73 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=58.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...++++ .+|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~~~~------~~ 152 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRDTRP------SI 152 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSCCSC------HH
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcccc------HH
Confidence 5788999999985443222222356789999999987755556667777788778874 5677997653321 11
Q ss_pred ChHHHHHHHhCCC
Q 015919 230 GSGSQVVQQFGIP 242 (398)
Q Consensus 230 ~~~~~~~~~~g~~ 242 (398)
+..+++++.++..
T Consensus 153 ~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 153 ELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHHHHCCE
T ss_pred HHHHHHHHhhCCC
Confidence 3567888888864
No 77
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.68 E-value=0.0073 Score=57.51 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEc-cccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N-~~~~ 217 (398)
..+.+.|+|||+--.........+..+|.+++|+. +......+...+..+...+++..-+++| +++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 46679999999755433222223457899999999 6655666777777778888888677788 8664
No 78
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.66 E-value=0.012 Score=55.14 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..+.++++. +.-|+||||+.-.|+..+...+.+|.++..|++.
T Consensus 53 ~~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 53 GRAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CCSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 356788887 7789999999999999998888899999999964
No 79
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.66 E-value=0.0019 Score=61.19 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.++ +++|+||||+|.++|..+++.|.+|++||+..
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5666666 79999999999999999999999999999965
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.65 E-value=0.039 Score=46.46 Aligned_cols=69 Identities=7% Similarity=-0.077 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh----hHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~----s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+.. +......+.+.+... ....+.+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 456789999998443222222225578999999998743 222333333334332 222356888997643
No 81
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.64 E-value=0.0087 Score=61.83 Aligned_cols=86 Identities=17% Similarity=-0.030 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..+.+.|+|||+-..........+..+|.+++|+.+...-.......+..+...+.+. .+|+|+++..... ..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~-ilviNK~Dl~~~~------~~ 145 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPR-IVFVNKMDKLGAN------FE 145 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSTTCC------HH
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCE-EEEEECCCccccc------hH
Confidence 5688999999986442222222245679999999986644445556666677777775 4678997643311 11
Q ss_pred ChHHHHHHHhCCC
Q 015919 230 GSGSQVVQQFGIP 242 (398)
Q Consensus 230 ~~~~~~~~~~g~~ 242 (398)
...+++.+.++..
T Consensus 146 ~~~~~l~~~l~~~ 158 (693)
T 2xex_A 146 YSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 3567778887754
No 82
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.58 E-value=0.004 Score=52.65 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+|+++++|.+ .-|+||||+...|...+...|++|..+..|+..
T Consensus 4 ~~~~~i~i~G-~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 4 TMIPLLAFAA-WSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp -CCCEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CcceEEEEEe-CCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3678888875 679999999999999999999999999998854
No 83
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.53 E-value=0.15 Score=42.83 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015919 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
+.+.|+|+|+.-.........+..+|.+++|..++.. ++..+...+..+.......+.+|.|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999987322111111224567999999987654 4555555555555432255678889976
No 84
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.018 Score=48.77 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceecc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~ 226 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+.... ...+.+|.|+++..... .
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~ 145 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----V 145 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC----C
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc----c
Confidence 4567899999863221112222245678899988875 455566666666665532 22356788997643211 1
Q ss_pred cCCChHHHHHHHhCC
Q 015919 227 FGRGSGSQVVQQFGI 241 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~ 241 (398)
...+..+.+.+.++.
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 146 VPTEKGQLLAEQLGF 160 (191)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 122345556666664
No 85
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.52 E-value=0.01 Score=54.98 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCCCChh----------hhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEccccccC
Q 015919 151 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~----------~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
.+.++|+|||+-.... ......+..+|.+++|+.++.. +.......++.+...+.+ +.+|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCC
Confidence 6789999998753311 0111123467999999998754 333333336777776666 457789976531
Q ss_pred CCceecccCCChHHHHHHHhC
Q 015919 220 DGKRYYPFGRGSGSQVVQQFG 240 (398)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~g 240 (398)
... ......+.+.+.++
T Consensus 137 ~~~----~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAK----NVLPLIDEIHKKHP 153 (308)
T ss_dssp SGG----GGHHHHHHHHHHCT
T ss_pred CHH----HHHHHHHHHHHhcc
Confidence 111 11234566667665
No 86
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.52 E-value=0.096 Score=43.79 Aligned_cols=86 Identities=10% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceec
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+... +.+ +.+|.|+++.....
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~---- 143 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQR---- 143 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc----
Confidence 578999999875332222222245679999999875 44555555555555442 333 56888997643311
Q ss_pred ccCCChHHHHHHHhCC
Q 015919 226 PFGRGSGSQVVQQFGI 241 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 144 AVKEEEARELAEKYGI 159 (195)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1112344556666664
No 87
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.50 E-value=0.0091 Score=57.40 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++|+.++..........+..+...+++.+-+++|+++..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999986322222222224568999999998765555556666777777888777889997643
No 88
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.47 E-value=0.049 Score=45.22 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...+..+.... ...+.+|.|+++.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence 567899999874332222222244679999998875 445566666666665542 2236688899765
No 89
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=0.11 Score=44.24 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+++..
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCc
Confidence 4677899999874332222122244678888888865 44566666666666543 334 56888997643
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.43 E-value=0.053 Score=45.67 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc------CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~------~~~~~~vV~N~~~~~ 218 (398)
+.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+.+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 139 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRI-PILFFANKMDLR 139 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCC-CEEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCC-eEEEEEeCcCcc
Confidence 35778999998744332222222456799999988764 4566665555544332 33 356888997543
No 91
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.37 E-value=0.072 Score=44.01 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc-----CCCeeEEEEccccccCCCcee
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~-----~~~~~~vV~N~~~~~~~~~~~ 224 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...++.+... +.+.+.+|.|+++.....
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--- 131 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--- 131 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC---
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc---
Confidence 36789999987543222222224567999999987543 555555555555442 455567889997653311
Q ss_pred cccCCChHHHHHHHhCC
Q 015919 225 YPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+.++.
T Consensus 132 -~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 132 -TIKPEKHLRFCQENGF 147 (178)
T ss_dssp -SSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1112344555555554
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.014 Score=51.28 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+.++. ..+--|.||||.+..++..++.+|.+|+++
T Consensus 12 G~i~l-itG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEF-ITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEE-EECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEE-EECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 45544 457779999999999999999999999999
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.34 E-value=0.15 Score=41.70 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... ....+.+|.|+++.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 35678999998743322222222446799999988754 3566665555544332 22346788899654
No 94
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.33 E-value=0.02 Score=46.91 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc--CCCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+...........+..+|.++++...+.. ++..+...++.+... +.+ +.+|.|+++..... ..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~----~~ 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDS----CI 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGC----SS
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCccc----cc
Confidence 56789999987322111111124467889999887543 455555555544432 344 56888997643311 11
Q ss_pred CCChHHHHHHHhCC
Q 015919 228 GRGSGSQVVQQFGI 241 (398)
Q Consensus 228 ~~~~~~~~~~~~g~ 241 (398)
..+..+.+.+.++.
T Consensus 128 ~~~~~~~~~~~~~~ 141 (168)
T 1z2a_A 128 KNEEAEGLAKRLKL 141 (168)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12344556666664
No 95
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.32 E-value=0.032 Score=46.58 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +.+|.|+++..
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 136 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 34678999999754432222222445788888888753 4445555544444332 344 56888997643
No 96
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.30 E-value=0.22 Score=40.28 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+.. .+.+ +.+|.|+++.
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDL 120 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcc
Confidence 4568899998754332222222345688888887654 355555555544433 2344 5688899764
No 97
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0041 Score=54.18 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..++|+|+ +.+|+||||+..+|+..+... ++|.+|+.|++
T Consensus 29 ~~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 29 GTVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 35677776 689999999999999988655 89999999985
No 98
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.28 E-value=0.11 Score=42.77 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
...+.|+|+|+.-.........+..+|.++++...+..........++.+...+.+ +.+|.|+++.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 45577888886433211111123456888888876653333344455555555665 5678899654
No 99
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.25 E-value=0.026 Score=52.96 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
++.|.+++.--++||||++..|...|.++|++|..+=.... ..+.+... -+|.+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt----g~li~~~~---------------------gv~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT----GILIGADA---------------------GYVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH----HHHTTCSE---------------------ECCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCce----eeeeccCC---------------------CCCCC-
Confidence 68899999999999999999999999999999987442211 11111100 00000
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh-----hhhhhhcCCCeEEEEeCCC-----------h
Q 015919 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQ-----------K 187 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-----~~~~~~~a~d~viiv~~p~-----------~ 187 (398)
....+.....+..++....+++||++||-..+|+.... +..+.-...|.+|+.-.|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 00011111112222222213799999999998876432 2222233567788766553 2
Q ss_pred -hhHHHHHHHHHHHhccCCCeeEEE-Ecc
Q 015919 188 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 214 (398)
Q Consensus 188 -~s~~~~~~~~~~l~~~~~~~~~vV-~N~ 214 (398)
.++.....+++.+. +.+++|++ +|-
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45555555555554 67889999 885
No 100
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.24 E-value=0.038 Score=49.57 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCCCChh------------hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDI------------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~------------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+..... .........+|.+++|+..+. ......+...+...+.+ +.+|+|+++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 34578999998754321 111111146799999998776 34444556666677776 4577899764
Q ss_pred cCCCceecccCCChHHHHHHHhCCCeEEe
Q 015919 218 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
...... ....+.+.+.+|.+++..
T Consensus 123 ~~~~~~-----~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 123 AEHRGI-----SIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHTTC-----EECHHHHHHHHCSCEEEC
T ss_pred CCcCCc-----HHHHHHHHHHcCCCEEEE
Confidence 332111 124677888899875544
No 101
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.23 E-value=0.072 Score=43.83 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~--~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.+.++|+|+.-. ........+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+++..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 45788999986433 1111111234568888887764 55666666666656543 344 56888997653
No 102
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=96.21 E-value=0.0029 Score=50.68 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=29.4
Q ss_pred CccceEEec-CCeeEEEEcCCCCcccCChHHHHhhhh
Q 015919 353 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTMER 388 (398)
Q Consensus 353 ~~~~~~~~~-~~~~~~i~w~dgh~s~y~~~~L~~~~~ 388 (398)
..|+.+.+. .+..|.|.|+||+.+.|++.|||..|.
T Consensus 9 ~~p~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~Cp 45 (132)
T 2l6n_A 9 PKVTGLKLKRKSRQLEISFDNGQQFTLSCELLRVYSP 45 (132)
T ss_dssp CCEEEEEEEGGGTEEEEEETTSCEEEEEHHHHHHSCS
T ss_pred CCCeeEEEecCCCEEEEEECCCCEEEeCHHHHHhcCC
Confidence 456677776 334799999999999999999999964
No 103
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.21 E-value=0.12 Score=43.35 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+.... ...+.+|.|+++..... ..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~----~~ 139 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK----VV 139 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC----CS
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc----cc
Confidence 4678999998743222222222456799999988754 44455555555554432 22356788997643321 11
Q ss_pred CCChHHHHHHHhCCC
Q 015919 228 GRGSGSQVVQQFGIP 242 (398)
Q Consensus 228 ~~~~~~~~~~~~g~~ 242 (398)
.....+.+.+.++.+
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (196)
T 3tkl_A 140 DYTTAKEFADSLGIP 154 (196)
T ss_dssp CHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHcCCc
Confidence 223455666666654
No 104
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.21 E-value=0.0052 Score=55.42 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|.+. |-.|+||||++..|+..|...|..++++|.|.
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 5677766 56899999999999999998999998888774
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.17 E-value=0.0062 Score=52.53 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..+.+|++. +..|+||||++..|+..+...|.+|.+++.|...
T Consensus 20 ~~~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 346778877 7789999999999999998888899999888643
No 106
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.085 Score=43.65 Aligned_cols=87 Identities=9% Similarity=0.125 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+.... ...+.+|.|+++..... ..
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~~ 134 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER----VV 134 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC----CS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc----cc
Confidence 4678899998744322222222446788999988754 44555555555554422 22466888997654321 11
Q ss_pred CCChHHHHHHHhCC
Q 015919 228 GRGSGSQVVQQFGI 241 (398)
Q Consensus 228 ~~~~~~~~~~~~g~ 241 (398)
..+....+.+.++.
T Consensus 135 ~~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 135 KREDGEKLAKEYGL 148 (180)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12234555555554
No 107
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.16 E-value=0.14 Score=43.52 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=50.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+.+|.|+++..... ..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~~ 131 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----VV 131 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC----CS
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc----cc
Confidence 4678999998743322222222446788999988754 45556666666655432 22356888997653321 11
Q ss_pred CCChHHHHHHHhCC
Q 015919 228 GRGSGSQVVQQFGI 241 (398)
Q Consensus 228 ~~~~~~~~~~~~g~ 241 (398)
..+....+.+.++.
T Consensus 132 ~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 132 SSERGRQLADHLGF 145 (203)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCC
Confidence 22345566666664
No 108
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.14 E-value=0.046 Score=44.73 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccCC--CeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .+...+...++.+..... ..+.+|.|+++..
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 34678999998743222221222456788888888754 455566666666655432 2456778997643
No 109
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.045 Score=46.29 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+.... ...+.+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 4567899999874332222222245678899988874 445566666666665542 23467888997653
No 110
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.12 E-value=0.072 Score=45.47 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4678999998743322222222456799999998754 45566666666555432 22456888997653
No 111
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.12 E-value=0.14 Score=42.35 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceec
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+... +.+ +.+|.|+++.....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 127 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMER---- 127 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTC----
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcc----
Confidence 4678899998743321111112345788888887654 4555555555444322 344 56788997643211
Q ss_pred ccCCChHHHHHHHhCC
Q 015919 226 PFGRGSGSQVVQQFGI 241 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 128 VISYEEGKALAESWNA 143 (181)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred eecHHHHHHHHHHhCC
Confidence 1222344555555553
No 112
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.09 E-value=0.32 Score=39.33 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+... ....+.+|.|+++.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence 45778999998754322222222456788999888754 4566666555554332 12346788899754
No 113
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.09 E-value=0.0012 Score=57.88 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
...+|+|. +.+||||||+..+|+..+... .++..|+.|++
T Consensus 37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 45677777 669999999999999987655 78999999985
No 114
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.07 E-value=0.063 Score=43.94 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc--CCCeeEEEEccccccCCCceecc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~~~~~~~~~ 226 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+... ....+.+|.|+++..... .
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~ 128 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER----H 128 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGC----C
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc----c
Confidence 34678899998743322222222346788888888754 4555555555554432 122356888997653311 1
Q ss_pred cCCChHHHHHHHhCC
Q 015919 227 FGRGSGSQVVQQFGI 241 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~ 241 (398)
...+....+.+.++.
T Consensus 129 ~~~~~~~~~~~~~~~ 143 (170)
T 1z08_A 129 VSIQEAESYAESVGA 143 (170)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112344555555553
No 115
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.06 E-value=0.12 Score=43.65 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc-----------CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~-----------~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.+++|+..+.. ++..+...+..+... +.+ +.+|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCC
Confidence 567899999987543222222224467999999987644 566666555554432 344 5678899754
Q ss_pred c
Q 015919 218 D 218 (398)
Q Consensus 218 ~ 218 (398)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0096 Score=55.00 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+.++++. +..|+||||+...||..+...|.+|++.+.|...
T Consensus 99 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 47899998 5699999999999999999888999999888753
No 117
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.98 E-value=0.066 Score=43.75 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceecc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~ 226 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+.... ...+.+|.|+++...+.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----- 124 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV----- 124 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----
T ss_pred EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-----
Confidence 34678999998732211111111345688888888754 35555555555555432 22456888997652211
Q ss_pred cCCChHHHHHHHhCC
Q 015919 227 FGRGSGSQVVQQFGI 241 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~ 241 (398)
...+..+.+.+.++.
T Consensus 125 ~~~~~~~~~~~~~~~ 139 (170)
T 1g16_A 125 VTADQGEALAKELGI 139 (170)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112344556666664
No 118
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.96 E-value=0.088 Score=43.86 Aligned_cols=68 Identities=12% Similarity=-0.005 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+.... ...+.+|.|+++..
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 3578899998744332222222446788999988754 45555555555444321 22467888997653
No 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.95 E-value=0.096 Score=44.45 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+... +.+ +.+|.|+++..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc
Confidence 4678999998754433222222345688888887653 4555555555554432 344 56888997643
No 120
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.94 E-value=0.16 Score=42.64 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 138 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 4678999998732211111112446788999988754 45556666665555431 2235678899764
No 121
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.91 E-value=0.074 Score=43.85 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .+...+...+..+.... ...+.+|.|+++.
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 35678999998743221211222446788999988754 44555555555554432 2236788899764
No 122
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.88 E-value=0.059 Score=44.00 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccCC--CeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+..... ..+.+|.|+++..
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 35678999998743322222222456799999988754 455666666655554322 2355677997643
No 123
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.87 E-value=0.16 Score=41.86 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=35.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc-------cCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~-------~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+.. .+. .+.+|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF-PFVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTC-CEEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCC-cEEEEEECCcc
Confidence 45678999998743322222222446788999887754 445555554444432 223 35678899764
No 124
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.056 Score=44.25 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc-----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~-----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.++++...+.. ++..+...++.+... +.+ +.+|.|+++..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 346789999998554332222224457888888887543 444555555544432 344 56888997643
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.84 E-value=0.054 Score=49.87 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCCh--------hhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc--CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~--------~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
+.+.++|+|||+-... .......+..+|.+++|++.+..--.....+++.+... +.+ .-+|+|+++..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccC
Confidence 4677899999875431 11111224578999999988543212234555666665 555 46778997643
No 126
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.82 E-value=0.01 Score=51.49 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.+. ++.|+||||++.++|. ..|.+|+++|.+.+
T Consensus 20 G~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 20 GVLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 4566665 8999999999999998 56889999999874
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.82 E-value=0.0082 Score=50.52 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
||++++|++ .-|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 678999996 77999999999999999999988888877764
No 128
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.80 E-value=0.013 Score=55.40 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+.+|+++ +..|+||||+...||..+...|.+|++.+.|...
T Consensus 156 ~g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 47899998 4699999999999999999888999999988753
No 129
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.66 E-value=0.28 Score=41.37 Aligned_cols=82 Identities=11% Similarity=0.061 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccccCCCceec
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... ....+.+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA----- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-----
Confidence 45778999998743221111112446799999988753 4566666655554332 22346788899754321
Q ss_pred ccCCChHHHHHHHhC
Q 015919 226 PFGRGSGSQVVQQFG 240 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g 240 (398)
...+++.+.++
T Consensus 146 ----~~~~~i~~~~~ 156 (192)
T 2b6h_A 146 ----MPVSELTDKLG 156 (192)
T ss_dssp ----CCHHHHHHHTT
T ss_pred ----CCHHHHHHHhC
Confidence 12456666665
No 130
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.65 E-value=0.011 Score=50.04 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
|++|.|. +--|+||||++..|+..|...|+++..+|.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4567776 5568999999999999999889999988754
No 131
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.14 Score=43.73 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+.+|.|+++...+. .
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----~ 142 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-----V 142 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----S
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-----c
Confidence 4678999998733211111112446789999988754 45555555555554432 22457888997653211 1
Q ss_pred CCChHHHHHHHhCCC
Q 015919 228 GRGSGSQVVQQFGIP 242 (398)
Q Consensus 228 ~~~~~~~~~~~~g~~ 242 (398)
..+....+.+.++.+
T Consensus 143 ~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 143 TADQGEALAKELGIP 157 (213)
T ss_dssp CHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHcCCE
Confidence 123445566666643
No 132
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.64 E-value=0.23 Score=41.41 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHh-c---cCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-K---LKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~-~---~~~~~~~vV~N~~~~~ 218 (398)
+.+.+.++|+|+.-.........+..+|.+++|...+. .++..+...+..+. . .+.+ +-+|.|+++..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLL 130 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcc
Confidence 35678899998643322221222456799999988754 45666655554442 2 2333 66888997543
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.62 E-value=0.17 Score=49.90 Aligned_cols=124 Identities=6% Similarity=-0.011 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccccCCCceec
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
..+.+.|+|||+.-.........+..+|.+++|+..+. .++..+...+..+... ....+.+|.|+.+....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~----- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA----- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC-----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC-----
Confidence 45789999998743322222223556899999998754 4566666555544332 12235678899764321
Q ss_pred ccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Q 015919 226 PFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVST 296 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~~i~~~~~~~~~ 296 (398)
...+++.+.++.... ...+.++++..... ...+.++.+.|.+.+.+.....++
T Consensus 439 ----~~~~~~~~~~~~~~~------------~~~~~~~~~~SA~~--g~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 439 ----MKPHEIQEKLGLTRI------------RDRNWYVQPSCATS--GDGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp ----CCHHHHHHHTTCTTC------------CSSCEEEEECBTTT--TBTHHHHHHHHHHHCC--------
T ss_pred ----CCHHHHHHHhchhhh------------hcCCeEEEEEECCC--CCCHHHHHHHHHHHHHhcCCCCCc
Confidence 134566666664321 11222344332221 233566666666666655544444
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.62 E-value=0.013 Score=55.31 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.++ +..|+||||++.++|..+++.|.+|+++|++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5677776 77899999999999999999999999999985
No 135
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.11 Score=42.33 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+...........+..+|.++++...+.. ++..+...+..+.... ...+.+|.|+++..
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 45689999987433222222224567999999887543 5556655555554331 22356788997654
No 136
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.59 E-value=0.39 Score=40.19 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+.+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 35678899998743322221222456788888888754 34455555555555432 22467888997653
No 137
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.58 E-value=0.087 Score=42.61 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~-------~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
...+.|+|||+.... .......+..+|.+++++..+..-........+.+...+.+ +.+|.|+++.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 346788999875431 11111124467888888887652111223444555555555 5678898654
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.013 Score=51.67 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.+. +..|+||||++.++|..+++.|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 5666666 668999999999999999999999999998863
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.53 E-value=0.25 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLA 66 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA 66 (398)
..|+++ ++.||||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 456666 889999999987665
No 140
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.50 E-value=0.47 Score=39.33 Aligned_cols=68 Identities=6% Similarity=-0.033 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+.-.........+..+|.+++|...+. .++..+...+..+... ....+.+|.|+++.
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 35678999998742211111122446788999988754 4566666655554332 22346788899654
No 141
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.11 Score=43.81 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc----cCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+... .......+..+|.+++|...+. .++..+...++.+.. .+.+ +.+|.|+++..
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~ 145 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLD 145 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccc
Confidence 356788999987554 1111122345788999988754 455566555555443 2344 56888997653
No 142
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.45 E-value=0.11 Score=44.11 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=38.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+.+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 4678999998632111111111446788999888754 45555555555554321 22367888997653
No 143
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.44 E-value=0.089 Score=42.72 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.++++...+ ..++..+...++.+... +.+ +.+|.|+++..
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 3467899999875432222222234578888888875 34455555554444432 344 56888997653
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.41 E-value=0.26 Score=41.78 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHH-HHHHHHHhcc--CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+ ...++.+... +.+ +.+|.|+++..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 4678999998743221121222446788988887654 455555 3455555543 444 56888997643
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.40 E-value=0.08 Score=52.16 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++++..+.... ......+..+..++.+.+.+|+|+++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 56789999998753333222333567899999999876422 2445555666677777677889997654
No 146
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.39 E-value=0.0082 Score=55.13 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
...+|++. +--|+||||+|..|+..|...|.++.+||+|-..
T Consensus 4 ~~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 35688887 6678999999999999998888899999999854
No 147
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.017 Score=53.70 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+ .+.-|+||||++.++|..++.+|.+|+++.+..
T Consensus 68 G~l~li-~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 68 RNFVLI-AARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 445555 488999999999999999999999999999884
No 148
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.32 E-value=0.12 Score=46.78 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~------------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+...... ........+|.+++|+..+.. .....+...+.+.+.+ +.+|+|+++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p-~ivv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIP-CIVALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCC-EEEEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 356788999988543221 111112467999999987753 3444555566666777 4577799764
Q ss_pred cCCCceecccCCChHHHHHHHhCCCeEEe
Q 015919 218 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
...... ....+.+.+.+|.+++..
T Consensus 125 ~~~~~~-----~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 125 AEKQNI-----RIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTTE-----EECHHHHHHHHTSCEEEC
T ss_pred hhhhhH-----HHHHHHHHHhcCCCEEEE
Confidence 332111 124577888888765543
No 149
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.32 E-value=0.014 Score=52.29 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-----CCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-----~G~rVllIDlD~q~ 85 (398)
.+.+|++. +--|+||||+|..||..|.. .|++|+++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 45678777 77799999999999987763 36789999999643
No 150
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.66 Score=38.31 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceec
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+... +.+ +.+|.|+++...+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc----
Confidence 4567789998743322211112345688888887654 4455555555555442 333 56788997654321
Q ss_pred ccCCChHHHHHHHhCCC
Q 015919 226 PFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~~ 242 (398)
...+....+.+.++.+
T Consensus 126 -~~~~~~~~~~~~~~~~ 141 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIP 141 (189)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHcCCe
Confidence 1223566677777654
No 151
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.32 E-value=0.043 Score=56.40 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..+.+.|+|||+...........+..+|.+++|+.+...--......++.+...+.+++ +|+|+++.. .. ..
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~------~~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD------YY 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC------HH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh------HH
Confidence 46778999998644322222222456799999999865444556677777777787765 678997654 21 11
Q ss_pred ChHHHHHHHhC
Q 015919 230 GSGSQVVQQFG 240 (398)
Q Consensus 230 ~~~~~~~~~~g 240 (398)
+..+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45677888777
No 152
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.30 E-value=0.13 Score=43.22 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhc----cCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.+++|...+ ..++..+...+..+.. .+.+ +.+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 5677899999874322211112245679999998875 3466666655554433 2334 56888997543
No 153
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.30 E-value=0.19 Score=42.37 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccccCCCcee
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~ 224 (398)
+.+.+.++|+|+...........+..+|.+++|...+.. ++..+...+..+.. .+.+ +.+|.|+++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 346788999986432211111123467889999887544 56666666555533 2334 6788899754321
Q ss_pred cccCCChHHHHHHHhCC
Q 015919 225 YPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~ 241 (398)
...+++.+.++.
T Consensus 140 -----~~~~~~~~~~~~ 151 (190)
T 1m2o_B 140 -----VSEAELRSALGL 151 (190)
T ss_dssp -----CCHHHHHHHTTC
T ss_pred -----CCHHHHHHHhCC
Confidence 134566666654
No 154
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.28 Score=40.91 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+... ....+.+|.|+++.
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 346789999987533212211224567999999887554 567666666655442 22346788899754
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.29 E-value=0.12 Score=50.21 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+--.........+..+|.+++|+..+..-. ......+..+..++.+.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999998743332222223456899999999876432 245566666777788867788899764
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.29 E-value=0.085 Score=53.29 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..|.+.|+|||+-..........+..+|.+++|+..+..........+..+...+++ +-+++|+++..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 357889999998654432222235678999999988654333344444555556777 56778997643
No 157
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.25 E-value=0.14 Score=42.17 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHH-h---ccCCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-S---KLKVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l-~---~~~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+ . ..+.+ +.+|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4678899998743221111111335688888887755 3555555554444 2 22344 56888997653
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.24 E-value=0.021 Score=49.78 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++++. +..|+||||++..++..++..|.+|++++.+.
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 5677776 77899999999999999988888999999876
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.24 E-value=0.021 Score=55.87 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCCC-----hh---hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTG-----DI---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~-----~~---~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
....+.|+|||+-.. .. ......+..+|.++++++....-...-..+.+.+++.+.+ +.+|.|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 456788999986221 00 0111123457888888886542223334566677666666 4577798653
No 160
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.23 E-value=0.16 Score=43.00 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+... +.+ +.+|.|+++.
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 3467899999875443222222244578999998875 44555566555555543 344 5688899764
No 161
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.13 Score=43.09 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC---CCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 35678999998743221111122456789999988754 45555666666665432 2245688899765
No 162
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.14 E-value=0.082 Score=43.67 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC-CCeeEEEEccccccCCCceecccC
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+.... ...+.+|.|+++..... ...
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~ 132 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK----VVE 132 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC----CSC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc----ccC
Confidence 3678999998732211111112446788888888754 45555555555554432 23356788997643311 111
Q ss_pred CChHHHHHHHhCCC
Q 015919 229 RGSGSQVVQQFGIP 242 (398)
Q Consensus 229 ~~~~~~~~~~~g~~ 242 (398)
......+.+..+.+
T Consensus 133 ~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 133 TEDAYKFAGQMGIQ 146 (181)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCe
Confidence 23445556666643
No 163
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.2 Score=42.76 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 467899999874332222222245678999998865 445555555555555432 22356788997653
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.07 E-value=0.027 Score=48.21 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.+.++ +..|+||||++..++..+...|.+|+.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 556665 7889999999999999999999999988764
No 165
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.06 E-value=0.25 Score=51.07 Aligned_cols=88 Identities=19% Similarity=0.047 Sum_probs=62.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
+.|-+=|||||+-.+........+.++|.+++|++...-=-..+..+++.+.+.+++.+ +++|+++..... -.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~------~~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGAN------FL 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCC------HH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCcc------HH
Confidence 46778899999977655443444667899999999866555678888999988899864 566996543211 11
Q ss_pred ChHHHHHHHhCCCeE
Q 015919 230 GSGSQVVQQFGIPHL 244 (398)
Q Consensus 230 ~~~~~~~~~~g~~~~ 244 (398)
...+++.+.++...+
T Consensus 156 ~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 156 RVVEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHHHCSCEE
T ss_pred HHHHHhhhhccccee
Confidence 367888888875443
No 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.06 E-value=0.099 Score=43.81 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=25.8
Q ss_pred CCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 176 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 176 ~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
++.+++++.++.........+.+.+...+.+ +.+|.|+++.
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 145 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDK 145 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 4777888876544333334556666666666 4677899754
No 167
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.03 E-value=0.3 Score=40.77 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+.-.........+..+|.+++|...+. .++..+...+..+... ....+.+|.|+++.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 35678999998743221111112346788999988754 3566665555544332 22346788899754
No 168
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.28 Score=42.42 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+.+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 3678999998743322221222446788999988754 45566666666555432 22356788997643
No 169
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.96 E-value=0.18 Score=41.94 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+... ....+.+|.|+++.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 347789999987432211111224567999999887543 666666655554432 22346788899654
No 170
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.95 E-value=0.035 Score=46.52 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+++|++. +--|+||||++..|+..|...|..++.+|.|.
T Consensus 4 ~g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 35778877 66799999999999999988899998888664
No 171
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.94 E-value=0.02 Score=55.90 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+..+.+ .+.-|+||||++.++|..++.+|.+|+++.+.-.
T Consensus 197 G~liiI-aG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 197 RNFVLI-AARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp SCEEEE-EECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEE-EeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 344444 5889999999999999999999999999998863
No 172
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.93 E-value=0.32 Score=40.59 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCcee
Q 015919 151 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~ 224 (398)
.+.+.|+|+|+.-... ......+..+|.+++|...+. .++..+...++.+... +.+ +.+|.|+++.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 143 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAI--- 143 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc---
Confidence 4678999998742211 111112446789999988754 4555555555444332 333 56888997643211
Q ss_pred cccCCChHHHHHHHhCC
Q 015919 225 YPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~ 241 (398)
....+..+.+.+.++.
T Consensus 144 -~v~~~~~~~~~~~~~~ 159 (189)
T 1z06_A 144 -QVPTDLAQKFADTHSM 159 (189)
T ss_dssp -CSCHHHHHHHHHHTTC
T ss_pred -eeCHHHHHHHHHHcCC
Confidence 1122334555555554
No 173
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.93 E-value=0.091 Score=50.44 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh-HHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s-~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.|+|||+.-.........+..+|.+++++..+... ...+...+..+..++.+.+.+|+|+++.
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 67999999874433322233355789999999987653 6666777777777777667788999764
No 174
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.92 E-value=0.042 Score=47.00 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
.++++.++ +-=|.||||.+..+|..+..+|++|+++-
T Consensus 7 ~g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45776666 55588999999999999999999999985
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.90 E-value=0.038 Score=47.37 Aligned_cols=41 Identities=32% Similarity=0.329 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+.+|++. +--|+||||++..||..|...|.-+..+|.|.
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456788887 77789999999999999998888777888764
No 176
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.90 E-value=0.067 Score=46.45 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
.+++..++ +-=|.||||.+..+|..+..+|++|+++-
T Consensus 27 ~G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35655555 66689999999999999999999999985
No 177
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.27 Score=45.73 Aligned_cols=83 Identities=8% Similarity=0.099 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHH-hcc--CCCeeEEEEccccccCCCceec
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL--KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l-~~~--~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
..+.+.|+|||+.-.........+..+|.+++|...+ ..++..+...+..+ ... ....+.+|.|+++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~----- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA----- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc-----
Confidence 4577899999974332222111244678888888875 45565555544443 322 12236688899754321
Q ss_pred ccCCChHHHHHHHhCC
Q 015919 226 PFGRGSGSQVVQQFGI 241 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~ 241 (398)
...+++.+.++.
T Consensus 282 ----~~~~~i~~~~~~ 293 (329)
T 3o47_A 282 ----MNAAEITDKLGL 293 (329)
T ss_dssp ----CCHHHHHHHHTC
T ss_pred ----cCHHHHHHHhch
Confidence 235667777764
No 178
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.85 E-value=0.019 Score=48.21 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEe
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDl 81 (398)
++.+.++ +..|+||||++..++..+. ..|.+|+.+++
T Consensus 38 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 5677766 7889999999999999998 78888877553
No 179
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.84 E-value=0.026 Score=52.81 Aligned_cols=39 Identities=15% Similarity=0.417 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+ .+.-|+||||++.++|..++..|.+|+++.+.-
T Consensus 46 G~LiiI-aG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 46 GSLVII-GARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp TCEEEE-EECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 445554 488899999999999999999999999999875
No 180
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.82 E-value=0.17 Score=41.93 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccccCCCceec
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
.+.+.|+|+|+.-.........+..+|.++++...+.. ++..+...+..+.. .+.+ +.+|.|+++.....
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 139 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR---- 139 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC----
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhcc----
Confidence 34566799987432111111113457888888887543 55555555554432 3444 56888997643311
Q ss_pred ccCCChHHHHHHHhCCC
Q 015919 226 PFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~~ 242 (398)
....+....+.+.++.+
T Consensus 140 ~v~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 140 KVTRDQGKEMATKYNIP 156 (183)
T ss_dssp CSCHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHhCCe
Confidence 12223456677777654
No 181
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.17 Score=43.24 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHH-HHHHHHHhcc--CCCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~-~~~~~~l~~~--~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+ ...+..+... +.+ +.+|.|+++.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDL 141 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence 4678999998753322222222446788998887754 455555 3455555543 444 5688899754
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.78 E-value=0.042 Score=51.82 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.|+ +--|+||||++.++|..++..|.+|++||....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 5677777 458999999999999999999999999998763
No 183
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.72 E-value=0.37 Score=39.78 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|+|+...........+..+|.++++...+ ..++..+...+..+... ....+.+|.|+++.
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 3467889999874322111112244568888888874 44566666655555432 22346788899754
No 184
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=94.71 E-value=0.046 Score=54.36 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCeEEEEE-cCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015919 42 KISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 42 ~~~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
.|+|-|.|. +.-.|+||+++++.|+..|.++|+||..+-+||+-|--+
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~ 58 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDA 58 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSG
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCc
Confidence 377889999 889999999999999999999999999999998765433
No 185
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.71 E-value=0.06 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLA 66 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA 66 (398)
...|+|+ +..|+||||+.-.|.
T Consensus 22 ~~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHh
Confidence 3566666 689999999987764
No 186
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.70 E-value=0.17 Score=41.61 Aligned_cols=68 Identities=16% Similarity=0.055 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc--CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+... ....+.+|.|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 4678999998743222211122446788999988754 4555555555554432 122356788997643
No 187
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.70 E-value=0.025 Score=57.77 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015919 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
|++|-+-|||||+-.+........+.++|.+++|+....-=-..+...++.+.+.+++.+ +++|+.+..... -
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~------~ 136 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID------L 136 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC------S
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC------H
Confidence 577889999999977655444444778899999999865544567888999999999975 567996543321 1
Q ss_pred CChHHHHHHHhCCCe
Q 015919 229 RGSGSQVVQQFGIPH 243 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~ 243 (398)
....+++.+.++...
T Consensus 137 ~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 137 STVYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 135778888887543
No 188
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.68 E-value=0.42 Score=40.53 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 4678999998754322222222456799999998754 45556666665555432 22356788997643
No 189
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.17 Score=42.63 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc-----CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~-----~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.++++...+. .++..+...++.+... +.+ +.+|.|+++..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 35678999998744322222222345788888888754 4555555555444432 333 57888997653
No 190
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.62 E-value=0.49 Score=41.01 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhcc-CC-CeeEEEEccccccCCCceecc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL-KV-PCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~-~~-~~~~vV~N~~~~~~~~~~~~~ 226 (398)
..+.+-|.||++.-....+...-+..++.++++... +..|+..+...++.+... +. ..+.+|.|+++..... .
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r----~ 135 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR----Q 135 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC----c
Confidence 456778999987433222222224467777777765 555666777766666543 22 2466788997643311 2
Q ss_pred cCCChHHHHHHHhCCC
Q 015919 227 FGRGSGSQVVQQFGIP 242 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~~ 242 (398)
...+..+++++.++.+
T Consensus 136 V~~~e~~~~a~~~~~~ 151 (216)
T 4dkx_A 136 VSIEEGERKAKELNVM 151 (216)
T ss_dssp SCHHHHHHHHHHHTCE
T ss_pred ccHHHHhhHHHHhCCe
Confidence 2334566777777754
No 191
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.60 E-value=0.65 Score=38.70 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceec
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
.+.+.|+|+++.-... . +..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+.+......+
T Consensus 66 ~~~l~i~Dt~G~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 137 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ---F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-- 137 (184)
T ss_dssp EEEEEEEECSSSCCHH---H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC--
T ss_pred EEEEEEEECCCChhhh---e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--
Confidence 4567889998754422 1 33568888887764 44566666666666654 233 5678899764211110
Q ss_pred ccCCChHHHHHHHhC
Q 015919 226 PFGRGSGSQVVQQFG 240 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g 240 (398)
....+....+.+.++
T Consensus 138 ~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 138 VIDDSRARKLSTDLK 152 (184)
T ss_dssp CSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcC
Confidence 122234555666655
No 192
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.59 E-value=0.033 Score=48.20 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
.++++|.+. +--|+||||++..|+..|. ..|.++..+|.|.
T Consensus 23 ~~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 23 QRGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SSCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 346777777 6679999999999999998 7898999998664
No 193
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.57 E-value=0.32 Score=39.56 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=45.2
Q ss_pred CCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCce
Q 015919 150 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKR 223 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~ 223 (398)
..+.+.++|+|+.-.... .....+..+|.++++...+. .++..+...+..+... +.+ +.+|.|+++.....
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-- 125 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSR-- 125 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGC--
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcc--
Confidence 346788999987433211 11111234688888887754 4455555555554432 344 56788997643211
Q ss_pred ecccCCChHHHHHHHhCC
Q 015919 224 YYPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+.++.
T Consensus 126 --~~~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 126 --EVSLEEGRHLAGTLSC 141 (169)
T ss_dssp --CSCHHHHHHHHHHTTC
T ss_pred --cCCHHHHHHHHHHcCC
Confidence 1222345556666664
No 194
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.52 E-value=0.025 Score=48.53 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=28.3
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
...+|+++|++. +--|+||||++..|+..+ | ..++|.|.
T Consensus 13 ~m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 13 AVRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp --CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 345567788877 667899999999999887 3 34667765
No 195
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.49 E-value=0.19 Score=42.39 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 4678999998744322222222446789999988754 45555555555555432 22467888997653
No 196
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.49 E-value=0.22 Score=42.23 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
+.+.+.++|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+ +.+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 34678899998743211111111346789999988754 4666666665555432 344 5688899754
No 197
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.46 E-value=0.11 Score=46.88 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC-CCeeEEEEccccccCC
Q 015919 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 220 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~~~~ 220 (398)
..+.+.|+|||+...... ........+|.+++++.++.. .........+...+ .+ +.+|+|+++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcc
Confidence 455689999987443211 111111357999999887664 33334444444556 55 5678899763221
Q ss_pred CceecccCCChHHHHHHHhCCCeEEe
Q 015919 221 GKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
.. .. ...+.+.+.+|.+++..
T Consensus 125 ~~----~~-~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 125 KG----AK-IDIKKMRKELGVPVIPT 145 (271)
T ss_dssp HT----CC-CCHHHHHHHHSSCEEEC
T ss_pred cc----cH-HHHHHHHHHcCCcEEEE
Confidence 11 11 23778889999775543
No 198
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.41 E-value=0.04 Score=55.14 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+|.+. +..|+||||++..|+..|..+|.++.++|.|.
T Consensus 371 ~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 45667666 77889999999999999999999999999884
No 199
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.41 E-value=0.45 Score=39.79 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc------CCCeeEEEEccccccCCCc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGK 222 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~------~~~~~~vV~N~~~~~~~~~ 222 (398)
..+.+.|+|+|+.-....+. ..+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+++.....
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~- 143 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYR- 143 (187)
T ss_dssp EEEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGC-
T ss_pred EEEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcC-
Confidence 34668889998743211111 1234678888888875 44666666665555442 444 56888997653211
Q ss_pred eecccCCChHHHHHHHhCC
Q 015919 223 RYYPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 223 ~~~~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+.++.
T Consensus 144 ---~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 144 ---QVTKAEGVALAGRFGC 159 (187)
T ss_dssp ---SSCHHHHHHHHHHHTC
T ss_pred ---ccCHHHHHHHHHHcCC
Confidence 1112334555565553
No 200
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.40 E-value=0.03 Score=47.23 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+++|+|. +--|+||||++..||..|...|.+.-.+|.|
T Consensus 3 ~~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 3566665 6679999999999999998888656666654
No 201
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.34 E-value=0.31 Score=43.52 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=52.2
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCC
Q 015919 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 221 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~ 221 (398)
..+.+.|+|+|+...... ........+|.+++|++.+... ........+...+.+ +.+|+|+++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKK-VILAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCC-EEEEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCC-EEEEEECcCCCCcc
Confidence 457889999987543211 1111113679999999877543 233445555666766 46778997653321
Q ss_pred ceecccCCChHHHHHHHhCCCeEE
Q 015919 222 KRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
. .. ...+.+.+.+|.+++.
T Consensus 127 ~----i~-~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 127 G----MK-IDRYELQKHLGIPVVF 145 (258)
T ss_dssp T----CC-BCHHHHHHHHCSCEEE
T ss_pred c----hH-HHHHHHHHHcCCCEEE
Confidence 1 11 2367888888876543
No 202
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.28 E-value=0.17 Score=43.61 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCCh------------hhhhh-hhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015919 150 GELDYLVIDMPPGTGD------------IQLTL-CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~------------~~~~~-~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
..+.+.|+|||+-... ..... .....+|.+++++..+..-.......++.+...+.+ +.+|+|+++
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D 155 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCD 155 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccc
Confidence 4678999999873211 00011 112235678888887643223344556677766666 457789975
Q ss_pred c
Q 015919 217 F 217 (398)
Q Consensus 217 ~ 217 (398)
.
T Consensus 156 l 156 (223)
T 4dhe_A 156 K 156 (223)
T ss_dssp G
T ss_pred c
Confidence 4
No 203
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.27 E-value=0.12 Score=53.26 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=38.4
Q ss_pred CcEEEEcCCCCCC-----hhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 152 LDYLVIDMPPGTG-----DIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~-----~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+++.|||||+-.. ..+... +..+|.+++|+.++.. +......+.+.+...+.+ +.+|+|+++.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~--i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGY--VNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHH--HHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHH--HHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 6899999987221 111222 3467999999987543 333333333455555655 6788899764
No 204
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.23 E-value=0.057 Score=49.32 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~ 83 (398)
+.+++++ +.-|+||||++.++|..++.. |.+|++++.+.
T Consensus 35 G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 5677776 778999999999999999975 88999998764
No 205
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.18 E-value=0.11 Score=52.58 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCC
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 229 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~ 229 (398)
..|.+.|+|||+-..........+..+|.+++|+.............+..+...+++ +-+|+|+++...... .
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~------~ 141 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADP------E 141 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH------H
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccH------H
Confidence 457899999997544332222235567999999987543222333444444456776 567789976433110 1
Q ss_pred ChHHHHHHHhCC
Q 015919 230 GSGSQVVQQFGI 241 (398)
Q Consensus 230 ~~~~~~~~~~g~ 241 (398)
...+++.+.++.
T Consensus 142 ~v~~ei~~~lg~ 153 (599)
T 3cb4_D 142 RVAEEIEDIVGI 153 (599)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 235667777664
No 206
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.18 E-value=0.17 Score=42.95 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc-------CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-------KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~-------~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+.+|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF-PFVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGS-CEEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCC-cEEEEEECCCCc
Confidence 35678999998743211111112346789999988754 4455555444443321 23 356888997653
No 207
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.17 E-value=0.34 Score=42.95 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCCcEEEEcCCCCCChhhh----------hh--hhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc-C----CCeeEEEE
Q 015919 150 GELDYLVIDMPPGTGDIQL----------TL--CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K----VPCIAVVE 212 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~----------~~--~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~-~----~~~~~vV~ 212 (398)
....++|+|||+-...... .. .....+|.+++|+..+.... ....+++.+.+. + ...+.++.
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~ 146 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFT 146 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEE
Confidence 4567899999874321110 00 01246788999988775432 223444444432 1 22356777
Q ss_pred ccccc
Q 015919 213 NMCHF 217 (398)
Q Consensus 213 N~~~~ 217 (398)
|+.+.
T Consensus 147 nK~Dl 151 (247)
T 3lxw_A 147 RKEDL 151 (247)
T ss_dssp CGGGG
T ss_pred chHhc
Confidence 88654
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.19 Score=42.07 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=35.0
Q ss_pred CCcEEEEcCCCCCCh--hhhhhh--hhcCCCeEEEEeCCC--hhhHHHHHHHHHHHhc-------cCCCeeEEEEccccc
Q 015919 151 ELDYLVIDMPPGTGD--IQLTLC--QVVPLTAAVIVTTPQ--KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~--~~~~~~--~~~a~d~viiv~~p~--~~s~~~~~~~~~~l~~-------~~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.... ...... ....+|.+++|+..+ ..++..+...+..+.. .+.+ +.+|.|+++.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 168 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL 168 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHh
Confidence 456788898864321 111110 011257888888875 4455544443333221 1333 5678899764
Q ss_pred c
Q 015919 218 D 218 (398)
Q Consensus 218 ~ 218 (398)
.
T Consensus 169 ~ 169 (193)
T 2ged_A 169 F 169 (193)
T ss_dssp T
T ss_pred c
Confidence 3
No 209
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.09 E-value=0.037 Score=46.22 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|.+ ++--|+||||++..||..| |...+.+|.|.
T Consensus 3 ~~~i~l-~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIIL-NGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 355554 5778999999999988776 44566666663
No 210
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.02 E-value=0.35 Score=40.89 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+++.-.... +....+..+|.+++|...+ ..++..+...+..+... +.+ +.+|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc
Confidence 45678889976433211 1111133468888888765 44555666665555432 344 56788997643
No 211
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.00 E-value=0.037 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++|.+. +--|+||||++..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 56778877 567999999999999877 33 3677763
No 212
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.97 E-value=0.23 Score=45.57 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=36.4
Q ss_pred CCCcEEEEcCCCCC-Chhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGT-GDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~-~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+.++++|||+-. .... .....+..+|.+++++..+..+- +...+++.+...+.+. -+++|+++..
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~-ilvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPV-ILAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCE-EEEEESTTTC
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCE-EEEEECcccC
Confidence 45678889997643 1100 00111334677888777654332 2335556666556664 4566986543
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.92 E-value=0.054 Score=52.75 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~ 83 (398)
+.++.++ +..|+||||++.++|...+. .|.+|+++++.-
T Consensus 200 G~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4455554 88899999999999999997 589999999874
No 214
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=93.91 E-value=0.017 Score=45.68 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=25.2
Q ss_pred cceEEec-CCeeEEEEcCCCCcccCChHHHHhhhh
Q 015919 355 PEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTMER 388 (398)
Q Consensus 355 ~~~~~~~-~~~~~~i~w~dgh~s~y~~~~L~~~~~ 388 (398)
|+.+.+. .+..|.|.|+ |+.+.|++.|||..|.
T Consensus 5 P~~i~l~~~~~~L~v~w~-G~~~~~~~~wLRd~Cp 38 (124)
T 2l6p_A 5 PSAIQLHKASKTLTLRYG-EDSYDLPAEFLRVHSP 38 (124)
T ss_dssp CSCCBCCTTTCEEEEEET-TEEEEEEHHHHHHTCC
T ss_pred CeEEEEecCCCEEEEEEC-CEEEEeCHHHHHhcCC
Confidence 3334443 3347999999 9999999999999964
No 215
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.91 E-value=0.068 Score=51.90 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=34.5
Q ss_pred CCCcEEEEcCCCCCC-------hh-hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTG-------DI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~-------~~-~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
....+.|+|||+-.. .. ......+..+|.++++++....-...-..+.+.++..+.+ +.+|+|+++.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 456788999987431 00 1111124467888888886542112223455556665655 5678899754
No 216
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=93.89 E-value=0.086 Score=52.35 Aligned_cols=46 Identities=30% Similarity=0.377 Sum_probs=41.0
Q ss_pred CeEEEEE-cCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015919 44 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 44 ~kvI~v~-s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
+|-|.|. +.-.|+||+++++.|+..|+++|+||..+-+||+-|--+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~ 49 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDP 49 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCG
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCC
Confidence 5788888 889999999999999999999999999999998765433
No 217
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.87 E-value=0.037 Score=54.82 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
+.++. ..+.-|+||||++.++|..++.+ |.+|+++++...
T Consensus 242 G~l~l-i~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVIM-VTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TCEEE-EEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CeEEE-EeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 44554 45888999999999999999987 999999999763
No 218
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.78 E-value=0.85 Score=38.29 Aligned_cols=68 Identities=13% Similarity=-0.029 Sum_probs=39.3
Q ss_pred CCCcEEEEcCCCCCChhhhh---hhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~---~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-...... ...+..+|.+++|...+.........+.+.+... ....+.+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 56789999998754321111 1124467999999988775333333333333322 22235688899653
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.77 E-value=0.087 Score=45.90 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+.++ +.-|+||||++..+|..+...|.++..++++.
T Consensus 52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4566666 67799999999999999999999999998754
No 220
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.76 E-value=0.88 Score=38.97 Aligned_cols=69 Identities=4% Similarity=-0.094 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHH-HHHHHHHHhccC-CCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKLK-VPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~-~~~~~~~l~~~~-~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+++.-.........+..+|.++++...+. .++.. +...++.+.... ...+.+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 45678899998743222222222456789999988754 44555 455556665542 22356778997653
No 221
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.73 E-value=0.094 Score=44.19 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
+|++. +--|+||||++..|+..|...|..|+-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 56689999999999999988898876554
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.71 E-value=0.067 Score=47.12 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
+.++.+ .+.-|+|||+++.++|...+ +.|.+|+++.++.
T Consensus 30 G~l~~i-~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLL-TGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 345554 58899999999999998755 5688999999875
No 223
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.70 E-value=0.072 Score=52.05 Aligned_cols=39 Identities=31% Similarity=0.557 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~ 83 (398)
+.++.++ +.-|+||||++.++|..++. .|.+|+++++..
T Consensus 203 G~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4566555 88899999999999999996 689999999875
No 224
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.64 E-value=0.86 Score=36.66 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+...........+..+|.++++...+ ..++..+...++.+... +.+ +.+|.|+++.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 120 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence 4567899999874432222112234568888888764 44555555555544432 344 5688899764
No 225
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.59 E-value=0.29 Score=47.49 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred CCCcEEEEcCCCCCCh-------h--hhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015919 150 GELDYLVIDMPPGTGD-------I--QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~-------~--~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
....+.|+|||+-... . ......+..+|.+++|++.... +.. -..+.+.++..+.+ +.+|.|+++
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~-d~~i~~~l~~~~~p-~ilv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKE-DESLADFLRKSTVD-TILVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHH-HHHHHHHHHHHTCC-EEEEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcCCC-EEEEEeCCC
Confidence 3445788898873321 0 1111224567889888876432 211 12344455555666 457789864
No 226
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=93.53 E-value=0.026 Score=57.12 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh-------HHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s-------~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+-..........+..+|.+++|+..+... .......+..+..++++.+.+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 4578899999874322211112234568888888765421 23344555666777887677889997643
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.52 E-value=0.067 Score=43.64 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.++.+.++ +.-|+||||++..++..+...|.++..++...
T Consensus 35 ~g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 35677776 77899999999999999988888888887543
No 228
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.47 E-value=0.58 Score=38.28 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=38.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc-------cCCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~-------~~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...++.+.. .+.+ +.+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccc
Confidence 4678999998744332222222445788888887654 344445444444432 2233 56888997643
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.46 E-value=0.11 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=28.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
.|++. +--|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 56666 556899999999999999999999976543
No 230
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.45 E-value=0.049 Score=45.45 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++|.+. +--|+||||++..||..| | ..++|.|.
T Consensus 3 ~m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 3 LAKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp --CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 45667776 677999999999999876 3 34677664
No 231
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.44 E-value=0.096 Score=48.59 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=34.6
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHH--CCCcEEEEEecCC
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVY 84 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllIDlD~q 84 (398)
.+.+.+|++. +-.|+||||++..|+..+.. .+.+|.++.+|..
T Consensus 89 ~~~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3456688877 77899999999999998874 3568999999974
No 232
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=93.44 E-value=0.2 Score=48.13 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=41.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh-HHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s-~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.|+|||+--.........+..+|.+++|+..+... ...+...+..+..++.+.+-+++|+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 67999999874322211122244679999999887432 3344444555566676667788999754
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.32 E-value=0.054 Score=45.52 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++.|.+. +--|+||||++..||..| |. -++|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~--~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KR--ILYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 46677776 557999999999999877 33 3456654
No 234
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.31 E-value=0.78 Score=46.25 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|||+-..........+..+|.+++|+..+..-.......++.+...+.+ +-+++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccc
Confidence 34699999998544322222224457999999998762223344455666667777 46778998753
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.28 E-value=0.12 Score=44.40 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.+.+|++. +.-|+||||++..|+..+...|.++..|..|..
T Consensus 20 ~~g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 456788887 777999999999999999876777888888764
No 236
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.13 E-value=1.3 Score=38.11 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~-~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.++++|++..-+. ..+.......++.+++|..- +..++..+......+... +.+ +.+|.|+++..
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 345678888653331 11111112235777777665 455666666665555543 344 56888997643
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.04 E-value=0.085 Score=49.26 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
|.++|++. +-.|+||||+|..||..| .+.+|++|..
T Consensus 6 m~~lI~I~-GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIV-GPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred CCceEEEE-CCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 33466665 778999999999999876 3788999974
No 238
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.01 E-value=0.13 Score=44.07 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+++|++. +--|+||||++..||..|...|.+|..+
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5677777 5568999999999999999889988544
No 239
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.97 E-value=0.19 Score=49.55 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|||+--.........+..+|.+++|+..+..........+..+...+.+ +-+++|+++..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 45678999997443322222224567889999887553333444555666667887 66788997643
No 240
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.92 E-value=0.14 Score=44.00 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAY 67 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~ 67 (398)
...|+|+ +..|+||||+...|..
T Consensus 12 ~~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhc
Confidence 3455666 7889999999887654
No 241
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=92.86 E-value=0.29 Score=52.95 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++|+..+......+...+..+...+++.+.+++|+++..
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999987333222222224568999999988654444455556666667888777889997643
No 242
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.84 E-value=0.12 Score=46.80 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC----------CCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~----------G~rVllIDlD~ 83 (398)
+.++.++ +..|+||||++.+++..++.. +.+|+++++..
T Consensus 30 G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 5677776 888999999999999977752 35677776654
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.82 E-value=0.1 Score=44.24 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
++++.++ +-=|+||||++..++..+..+|++|+++-
T Consensus 3 g~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 3 GKLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3566666 44578999999999999999999999874
No 244
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.80 E-value=0.046 Score=45.98 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|.+. +--|+||||+|..||..| |.. ++|.|.
T Consensus 1 M~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 1 MAPKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp -CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 44567766 677999999999998876 433 577774
No 245
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.71 E-value=0.38 Score=41.39 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc--CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+... +.+ +.+|.|+++..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccc
Confidence 456789999987322111111113467888888887543 455555555555443 344 56888997654
No 246
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.66 E-value=0.1 Score=43.45 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH-------CCCcEEEEEe
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-------~G~rVllIDl 81 (398)
.+.+.++ +..|+||||++..++..+.. .+.++..+++
T Consensus 43 ~~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 3455555 78899999999999999876 3555555554
No 247
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.66 E-value=0.12 Score=42.92 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|.+. +--|+||||++..|+.. ......+|.|.
T Consensus 1 M~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 1 MKKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CCeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 45566665 77799999999988872 23456677653
No 248
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.64 E-value=0.12 Score=52.36 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++++|.|. +--|+||||++..||..|..+|.++..+|.|.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 56677776 66799999999999999999999999888664
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.61 E-value=0.087 Score=48.17 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCC--CcEEEE-EecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G--~rVllI-DlD~q 84 (398)
+.+.+|+|. +..|+||||++..|+..+...| .++..+ ..|..
T Consensus 29 ~~~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 346788877 7779999999999999998654 444444 88874
No 250
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.60 E-value=0.13 Score=47.46 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHH--HCCCcEEEEEecCCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllIDlD~q~ 85 (398)
..+.+|++. +.-|+||||++..|+..+. -.+-+|.+|++|-..
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 456889988 6678999999999998886 344579999998643
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.57 E-value=0.15 Score=46.96 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD 82 (398)
.+.+.++ +.-|+|||+++..+|..+. ++|.+|+.+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4566666 6779999999999999999 999999988764
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.50 E-value=0.12 Score=48.42 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~q 84 (398)
+.++.++ +.-|+||||++.++|...+. .|.+|+.||++..
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4566655 77899999999999998654 5789999999863
No 253
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.48 E-value=0.099 Score=44.83 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|+|= +==|+||||.+..|+..|..+|.+|++.--
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5554 445899999999999999999999987653
No 254
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.47 E-value=0.14 Score=47.52 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.|+++|.++ +--|+||||++..||..+ ...+||+|..
T Consensus 3 ~m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 355666665 778999999999998865 4678999863
No 255
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=92.47 E-value=0.24 Score=48.68 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+--.........+..+|.+++|+..+..-.......+..+...+++. -+++|+++.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 3567999999873222122222245689999999886533334445556667778887 778899654
No 256
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.40 E-value=0.27 Score=51.84 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+-..........+..+|.+++|+.............+..+...+++. -+|+|+++.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~ 162 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDR 162 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCc
Confidence 4688999999986543322222355789999999986653334445555555566665 578899764
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.38 E-value=0.08 Score=49.19 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~q 84 (398)
+.++.++ +.-|+||||++.++|...+.. |.+|+.||+...
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4566666 678999999999999987765 789999999863
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.38 E-value=0.12 Score=45.32 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~ 83 (398)
+.++.++ +..|+||||++..+|...+. .+.+|+.+|...
T Consensus 24 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5677777 78899999999999986443 367899999876
No 259
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.37 E-value=0.13 Score=51.85 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllIDlD~ 83 (398)
+.+.+|.+. +--|+||||+|..|+..|..+| .++.++|.|.
T Consensus 394 q~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 394 TQGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp TCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ccceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345677776 6667999999999999999888 8999999774
No 260
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.37 E-value=0.3 Score=41.60 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHH-HHHHHHhcc--CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+. ..+..+... +.+ +.+|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 45667799998743222222222456799999888754 4555554 455555544 344 56788997643
No 261
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.36 E-value=0.19 Score=43.06 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
++++|++.+ --|+||||++..||..|...+.+|.++.
T Consensus 9 ~~~~I~l~G-~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEG-LDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEE-STTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEc-CCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 356788774 4589999999999999998888885443
No 262
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.31 E-value=0.59 Score=39.06 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHH-HHHHHHhcc--CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +.+|.|+++..
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 34678899998743322222222446789999988754 4455554 455555543 444 56888997543
No 263
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.28 E-value=0.95 Score=37.47 Aligned_cols=69 Identities=9% Similarity=-0.049 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHH-HHHHHHHhcc-CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~-~~~~~~l~~~-~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+ ..++..+ ...++.+... ....+.+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 3567899999874321111112244678888888875 3455555 3444555443 222356888997643
No 264
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.27 E-value=0.35 Score=48.16 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|++.+.. ......++.+...+ .+ +.+|.|+++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcc
Confidence 467899999998432221111113467888888876543 45556666666544 44 45888997653
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.20 E-value=0.085 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|++. +--|+||||++..||..+ | ...+|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~--~~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---C--CCEEeccH
Confidence 56788887 667899999999888765 3 34667663
No 266
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.06 E-value=0.17 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
|++-|+|=+.- |+||||.+..|+..|. +|++|++.-
T Consensus 1 M~kFI~~EG~d-GsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFEGPE-GSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEECCT-TSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEECCC-CCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 67888887554 8999999999999996 588887653
No 267
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.03 E-value=0.11 Score=44.53 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHH-----HCC-CcEEEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 82 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G-~rVllIDlD 82 (398)
.||+++.|. +.-|+|||+.|+.++..++ +.| .+|.+..+|
T Consensus 3 ~~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 3 AMAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp -CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred cceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 366666666 7778999999999877765 567 555555444
No 268
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.02 E-value=0.12 Score=44.25 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++|++. +.-|+||||++..||. .|.. ++|.|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 56788887 6678999999988876 4654 468775
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.97 E-value=0.084 Score=45.13 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|++. +.-|+||||++..||. + | +.++|+|-
T Consensus 1 m~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 1 MKRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 3577877 6679999999998887 4 5 45677765
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.80 E-value=0.14 Score=45.68 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|+++ +--|+||||+|..||..+ |. .+++.|.
T Consensus 1 M~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 3566665 778999999999998876 33 4567775
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.80 E-value=0.24 Score=43.45 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
.+.++++. +.-|+||||+...++.... ..+..+++++.+.
T Consensus 29 ~G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 36788887 7889999999999997655 6677888888654
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.78 E-value=0.2 Score=42.75 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
+++|+|. +--|+||||++..||..|...| +|+..+
T Consensus 4 ~~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 4 GVLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 3566666 6678999999999999998777 664443
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.71 E-value=0.087 Score=44.80 Aligned_cols=37 Identities=35% Similarity=0.355 Sum_probs=26.2
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.+.+++|++. +.-|+||||++..||.. |. .++|.|.
T Consensus 4 ~~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 4 EAKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp --CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred cccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 34456788877 66789999999888764 54 4678874
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.67 E-value=0.12 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|++. +--|+||||++..||..| |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 5677776 677999999999999887 433 456654
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.66 E-value=0.14 Score=43.52 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
+++|++. +--|+||||++..||..| .|.+++.++
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 5678877 556899999999998877 467776655
No 276
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.63 E-value=0.11 Score=43.13 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG 71 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~ 71 (398)
.+.+.+ .+.-|+||||++..+|..+..
T Consensus 43 ~~~vll-~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPIL-LGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEE-ESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 345544 477899999999999999876
No 277
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.61 E-value=1.1 Score=38.04 Aligned_cols=69 Identities=9% Similarity=-0.033 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHH-HHHHHHHhcc-CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~-~~~~~~l~~~-~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.++++...+. .++..+ ...++.+... ....+.+|.|+++..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 35678999998743221111122446788888888754 445555 3444555443 223466788997653
No 278
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.61 E-value=0.14 Score=43.00 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+|+++|++. +--|+||||++..||..+ | ...+|.|
T Consensus 4 ~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 4 SKPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 366777777 666899999999998876 3 3566775
No 279
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.60 E-value=0.17 Score=43.35 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+.+|++. +.-|+||||++..|+..+.. ++.+++.|+..
T Consensus 5 ~~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 46788888 55699999999999887743 58899998753
No 280
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.58 E-value=0.28 Score=49.11 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCh-----------hhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 153 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 153 D~VIID~pp~~~~-----------~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
.++|||||+-... .......+..+|.+++|+.++.. ........++.+...+.+ +.+|+|+++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCcc
Confidence 5799999874431 01111113457999999998763 234455566666655544 67888997643
No 281
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=91.56 E-value=0.17 Score=50.33 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=45.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|||+--.........+..+|.+++|+..+..........+..+...+.+ +-+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence 34578899987433222222224457999999998776666667777778888887 56778997653
No 282
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.55 E-value=0.21 Score=43.69 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q~ 85 (398)
.++.|+|. +--|+||||++..|+..|.. .|++|.++--.|.+
T Consensus 20 ~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 20 GSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 46777776 66689999999999999998 99999885566643
No 283
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.55 E-value=0.14 Score=43.61 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=26.8
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+..|++|++. +--|+||||++..||..+ |. ..+|.|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 4456788877 666899999999988764 43 567776
No 284
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.28 E-value=0.1 Score=44.73 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
++++|++. +.-|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 46788887 5569999999987776431 5888999864
No 285
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=91.19 E-value=0.32 Score=42.93 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred CCeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCccc
Q 015919 43 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV 92 (398)
Q Consensus 43 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l 92 (398)
+||-|.|.++ -.|.||=.+|+.|+..|..+|++|..+-+||.-|--+..+
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GTM 72 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTF 72 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC---
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCCC
Confidence 3677777766 4889999999999999999999999999999876544433
No 286
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.01 E-value=0.068 Score=45.96 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
+|+|. +--|+||||++..|+..|...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 555899999999999999888888887753
No 287
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.00 E-value=0.18 Score=46.63 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=31.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC--CCcEEEEEecCC
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllIDlD~q 84 (398)
++-++ +--|+||||++.+++..++++ |.+|+.||....
T Consensus 30 iteI~-G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILA-GPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEE-ESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 44444 668999999999999999986 889999997653
No 288
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.00 E-value=1.9 Score=40.25 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCCCh-------------hhhhhhhhcCCCeEEEEeCCChh--hHHHHHHHHHHHhccCCCeeEEEEccc
Q 015919 151 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKLKVPCIAVVENMC 215 (398)
Q Consensus 151 ~yD~VIID~pp~~~~-------------~~~~~~~~~a~d~viiv~~p~~~--s~~~~~~~~~~l~~~~~~~~~vV~N~~ 215 (398)
..++.|+|||+-... .......+..++.+++++.+... .......+++.+...+.+ .-+|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 568999999874331 11111124467878887765322 223334455555555555 45667997
Q ss_pred ccc
Q 015919 216 HFD 218 (398)
Q Consensus 216 ~~~ 218 (398)
+.-
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 654
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.90 E-value=0.18 Score=42.01 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
++.|.+. +--|+||||++..||..+ |. ..+|.|
T Consensus 11 ~~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 11 LPNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 4566665 777999999999999876 33 445655
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.80 E-value=0.17 Score=42.47 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
++++|.+. +--|+||||++..|+..| |.. ++|.|
T Consensus 4 ~~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 4 TPALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 45666666 666899999999999877 444 35544
No 291
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.77 E-value=0.21 Score=42.56 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=26.3
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
..++++|.+. +--|+||||++..||..+ |.. ++|.|
T Consensus 17 ~~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3455677776 667999999999999877 444 46664
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.75 E-value=0.29 Score=40.46 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|++. +--|+||||++..|+..+ | ...+|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 5677776 677999999999998876 4 35677765
No 293
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.74 E-value=0.71 Score=41.12 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLA 66 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA 66 (398)
..|+++ +..|+||||+.-.|.
T Consensus 37 ~~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 37 MTVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHh
Confidence 345555 889999999988775
No 294
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.70 E-value=0.15 Score=43.53 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|.++|++. +--|+||||++..||..| | +.++|.|.
T Consensus 1 m~~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 1 MRGIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp CCSEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 34577776 666899999999998876 3 45677774
No 295
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.65 E-value=0.79 Score=37.70 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHH-HHHHHHhcc--CCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~-~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +.+|.|+++..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 34667899998643222221222446788999988754 4555554 345555443 444 56888997643
No 296
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.57 E-value=0.35 Score=41.95 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
++.|+|. +--|+||||++..|+..|..+|++|.+..
T Consensus 6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 5677776 66689999999999999999999997654
No 297
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.43 E-value=0.2 Score=49.47 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-C-CCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~-G~rVllIDlD~ 83 (398)
.+.+|.+. +--|+||||++..||..|.. + |..+-++|.|.
T Consensus 394 ~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45677766 56699999999999999997 6 47788899887
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.39 E-value=0.21 Score=41.06 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|.+. +--|+||||++..||..+ |.. .+|.|.
T Consensus 1 M~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 1 MTLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp -CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 3466665 667999999999988776 333 466664
No 299
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.35 E-value=0.18 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAY 67 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~ 67 (398)
..++|+|+ +-||+||||+|..++.
T Consensus 151 ~~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHH
Confidence 35788887 7899999999998885
No 300
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.31 E-value=0.47 Score=45.88 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++|+..+..........+..+...+.+.+-+|+|+++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999987433222222225578999999998765444555666666677777677889997643
No 301
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.30 E-value=2.8 Score=34.25 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc--CCCeeEEEEccccccCCCceeccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... ....+.+|.|+++..... ..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~v 131 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR----QV 131 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC----CS
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC----cC
Confidence 4678999998743322221222446788999988754 4556666666655543 122456888997653321 11
Q ss_pred CCChHHHHHHHhCC
Q 015919 228 GRGSGSQVVQQFGI 241 (398)
Q Consensus 228 ~~~~~~~~~~~~g~ 241 (398)
..+....+.+.++.
T Consensus 132 ~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 132 SKERGEKLALDYGI 145 (183)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 22344556666664
No 302
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.22 E-value=0.29 Score=49.18 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=28.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+.+..+-.|+||||++..++..+...|.+|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 344458889999999999999999999999886
No 303
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=90.21 E-value=0.23 Score=43.97 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=31.8
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.....|+|++.|+++-||.|+ .+|..|+++|.+|+++|-+..
T Consensus 15 ~~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 15 VPRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 5566778999999999988886 677889999999999998764
No 304
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.14 E-value=0.15 Score=43.21 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|++. +--|+||||++..||..| | ...+|.|.
T Consensus 11 ~~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 11 KCKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp HSCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 45677777 666899999999999877 3 44677653
No 305
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.14 E-value=0.33 Score=48.17 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.+|.+ .+--|+||||+|..||..|...|.++.+++.|-
T Consensus 34 ~~~lIvl-vGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVM-VGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3445554 477899999999999999998899999999885
No 306
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.05 E-value=1.1 Score=43.51 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCC---------CChhh-h-hhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPG---------TGDIQ-L-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~---------~~~~~-~-~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
....+.|+|||+- ..... . ....+..+|.++++++.+..........++.+...+.+ +.+|+|+++..
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 319 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAV 319 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGS
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcC
Confidence 3446788888762 11111 1 11123457888888887664444555666666666655 56788997654
Q ss_pred C
Q 015919 219 A 219 (398)
Q Consensus 219 ~ 219 (398)
.
T Consensus 320 ~ 320 (456)
T 4dcu_A 320 D 320 (456)
T ss_dssp C
T ss_pred C
Confidence 3
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.02 E-value=0.25 Score=41.46 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+++|++. +--|+||||+|..||..+ |. ..+|.|
T Consensus 3 ~~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 3 PLVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 4566665 777999999999998876 43 356765
No 308
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.60 E-value=0.31 Score=45.88 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC--------CCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~--------G~rVllIDlD~ 83 (398)
++.+.++ +..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 4556655 888999999999999998765 77888887643
No 309
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.57 E-value=0.45 Score=41.22 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCC-cEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 79 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllI 79 (398)
++.|+|- +--|+||||.+..|+..|...|. .|.+.
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 5677777 55689999999999999999998 66443
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.50 E-value=0.4 Score=42.32 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-----CCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-----G~rVllIDlD~ 83 (398)
+.+|++. +.-|+||||++..|+..+..- +.++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 5788988 777999999999999877321 34677888875
No 311
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.45 E-value=0.32 Score=42.65 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC----CCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~----G~rVllID 80 (398)
.++.|+|. +--|+||||++..|+..|... |.+|.+.-
T Consensus 24 ~g~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 35677776 666899999999999999988 99997543
No 312
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.33 E-value=0.16 Score=47.05 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.++ +..+..|+||||+|.++|.. .|.+|+.++++
T Consensus 124 svi-LI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMV-IVTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEE-EEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEE-EEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 444 45589999999999999987 67899999983
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.31 E-value=0.22 Score=44.35 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
++++|.+. +--|+||||++..|+..+ +..+.++|.|.-
T Consensus 31 ~~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 45566655 778999999999998765 335677888753
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.31 E-value=0.23 Score=45.21 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+.+.++--|+||||++..|+..+. .....||.|.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechH
Confidence 34555668889999999999987552 2456777754
No 315
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.21 E-value=0.31 Score=44.21 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.+++|++. +--|+||||++..|+. + |. -+||+|.
T Consensus 72 ~~~~~iI~I~-G~~GSGKSTva~~La~-l---g~--~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLT-GISGSGKSSVAQRLKN-L---GA--YIIDSDH 107 (281)
T ss_dssp CTTCEEEEEE-ECTTSCHHHHHHHHHH-H---TC--EEEEHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHH-C---CC--cEEehhH
Confidence 3456788887 5668999999999983 3 65 4578875
No 316
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.12 E-value=0.36 Score=44.46 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
...+.++ +.-|+||||++..++..+...|.+++.+++.
T Consensus 37 ~~~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CSSEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3456666 6679999999999999999888999988764
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.01 E-value=0.38 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|.++ +--|+||||++..||..+ .| .-++|+|-
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 4567766 667999999999888762 13 55678774
No 318
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.98 E-value=0.34 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=26.2
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
|......++.|.|. +.-|+||||++..||..| | ...+|.|
T Consensus 9 p~~~~~~~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 9 PVPESPKGVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp -----CCCCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCCCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 44455556677777 556999999999999887 3 3456664
No 319
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.97 E-value=0.43 Score=46.49 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCC-cEEEE
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 79 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllI 79 (398)
..+..+-.|+||||++..++..|...|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4455588899999999999999999887 67765
No 320
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.93 E-value=0.57 Score=41.04 Aligned_cols=40 Identities=13% Similarity=-0.040 Sum_probs=32.3
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
..|+++..++ +.=|.||||-+..++..+..+|++|+++-.
T Consensus 16 ~~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~kp 55 (234)
T 2orv_A 16 KTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKY 55 (234)
T ss_dssp --CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3467766655 666799999999999999999999999873
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.80 E-value=0.22 Score=45.98 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH------------HCC----CcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La------------~~G----~rVllIDlD~q 84 (398)
+.++.++ +.-|+||||++.++|...+ +.| .+|+.||++..
T Consensus 98 g~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 4566665 7789999999999998743 245 79999998864
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.79 E-value=0.45 Score=40.44 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|++. +--|+||||++..|+..+ | ...+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 5678777 677999999999999877 4 35667665
No 323
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.75 E-value=0.37 Score=41.03 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+|+++ +.-|+||||++..||..+ | .-+||+|--
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 577777 566899999999888764 5 456888863
No 324
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.64 E-value=0.51 Score=41.31 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+++.|+|. +--|+||||++..|+..|.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 56788877 55689999999999999988 8888654
No 325
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.61 E-value=0.33 Score=45.18 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+++++|.++ +--|+||||++..||..+ ..-+||+|..
T Consensus 38 ~~~~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred cCCceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 344677666 667999999999998755 4668999974
No 326
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.53 E-value=0.33 Score=45.44 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC---CCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~---G~rVllIDlD~ 83 (398)
+..+.++ +..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 45 PNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 4566665 788999999999999998765 77888888654
No 327
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.49 E-value=0.22 Score=42.47 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=25.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.++ +..|+|||+++..++..+...+.++..+.++
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 5444 7889999999999999987665544444443
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.44 E-value=0.4 Score=53.98 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+.++.++ +.-|+||||++.++|...++.|.+|+++|++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 5566665 8889999999999999999999999999998743
No 329
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.43 E-value=0.65 Score=42.76 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-C-CcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~rVllIDlD~q 84 (398)
+.+.+|++. +.-|+||||++-.|+..+... | .+|.+|-.|..
T Consensus 88 ~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 457888887 777999999999999988753 5 57888888764
No 330
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.43 E-value=0.68 Score=39.44 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=32.4
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|.....|+++..++ +.=|.||||-....+.....+|++|+++-.
T Consensus 13 ~~~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 13 PRGSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp ------CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 55666788877776 555799999999999998999999999973
No 331
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=88.41 E-value=0.43 Score=44.06 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=28.7
Q ss_pred CeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
-.||+|.|- =||+|||-++..|+..|. ++++.+|-
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ils 71 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILS 71 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEE
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEe
Confidence 579999887 899999999999999995 45665553
No 332
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=88.28 E-value=0.99 Score=44.34 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=41.5
Q ss_pred CCeEEEEEcCC-CCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc
Q 015919 43 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 91 (398)
Q Consensus 43 ~~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~ 91 (398)
++|-|.|+++- .|.||-.+|+.|+..|..+|+||..+-+||+-|--+..
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd~gt 51 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVDAGT 51 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSSSTT
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeecCCC
Confidence 36888888754 88899999999999999999999999999987654443
No 333
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=88.27 E-value=1.4 Score=42.91 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHH-------HHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~-------~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++++..+..... .....+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999997544332222335578999999998764333 445555566667887677889997654
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.16 E-value=0.41 Score=41.34 Aligned_cols=34 Identities=26% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.++.|.|. +--|+||||++..||..| |. ..+|.|
T Consensus 3 ~~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 35667776 556999999999999877 33 456664
No 335
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=88.15 E-value=0.64 Score=44.68 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
...++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 47 ~~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp CSSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 346899999 55689999999999999999999775
No 336
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=88.11 E-value=1.1 Score=39.79 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=39.1
Q ss_pred CCeEEEEEc-CCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCccc
Q 015919 43 ISNIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV 92 (398)
Q Consensus 43 ~~kvI~v~s-~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l 92 (398)
.||-|.|++ .-.|.||=.+|+.||..|..+|++|-++-+||+-|--+..+
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTM 72 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTF 72 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC----
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCC
Confidence 456666664 47789999999999999999999999999999876544433
No 337
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.08 E-value=0.43 Score=53.70 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.+|.++ +.-|+||||++.++|..++++|.+|+++++.-.
T Consensus 732 G~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 732 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 4566665 888999999999999999999999999998764
No 338
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.91 E-value=0.28 Score=40.21 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEE
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 77 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 77 (398)
+|++. +--|+||||++..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 55555 77899999999988 55676643
No 339
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.91 E-value=0.44 Score=43.85 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++|+ .++--|+||||++..||..+ ..-+|.+|.
T Consensus 4 ~~i~-i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 4 KLVA-IVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp EEEE-EECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred cEEE-EECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 4554 45777999999999998765 456788876
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.89 E-value=0.3 Score=40.00 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|.+. +--|+||||++..|+..| |.. ++|.|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 45665 667999999999998876 443 567664
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.87 E-value=0.51 Score=41.59 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCc-EEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r-VllIDlD~ 83 (398)
++.|+|. +--|+||||++..|+..|...|.+ |.+. -.|
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~-rep 65 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT-REP 65 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee-cCC
Confidence 5678777 555799999999999999999999 5544 344
No 342
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=87.72 E-value=1.2 Score=43.10 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHH-------HHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~-------~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|||+--.........+..+|.+++|+..+..++. .+.+.+..+...+.+.+.+++|+++..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 578899999997555433333335678999999999876554 344555556667777677889997654
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.56 E-value=0.44 Score=39.07 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
-|.+|.+. +--|+||||++..||..| |.. ++|.|.
T Consensus 6 ~~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 6 HMQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp --CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred ccceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 36788887 556899999999998876 444 467765
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.43 E-value=5.3 Score=37.32 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID 80 (398)
...+|+|. +.-|+||||+...|+..+... |.+++.+.
T Consensus 122 ~~g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 122 PRGLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 34566666 788999999999999988764 55665443
No 345
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=87.39 E-value=0.7 Score=44.53 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
..++|+|+ |--||||++.-|+..|...|++|.++
T Consensus 38 ~~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 38 QGRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SSCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999 55689999999999999999999875
No 346
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.33 E-value=0.41 Score=40.11 Aligned_cols=35 Identities=40% Similarity=0.442 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+++|++. +.-|+||||++..||.. .+...+.+|.|
T Consensus 9 g~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 5677776 67799999999888764 23344555544
No 347
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.04 E-value=1.4 Score=41.18 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCChhh--------hhh-hhhcCCCeEEEEeCCChh---hHHHHHHHHHHHhcc--CCCeeEEEEcccc
Q 015919 151 ELDYLVIDMPPGTGDIQ--------LTL-CQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMCH 216 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~--------~~~-~~~~a~d~viiv~~p~~~---s~~~~~~~~~~l~~~--~~~~~~vV~N~~~ 216 (398)
.+++.++|||+...... ... .....+|.+++|++.+.. +.......+..+... +.+ +-+|.|+.+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 45688999987533210 000 112246888999886544 455555666655542 344 567889864
Q ss_pred c
Q 015919 217 F 217 (398)
Q Consensus 217 ~ 217 (398)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 3
No 348
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.03 E-value=0.66 Score=42.15 Aligned_cols=39 Identities=28% Similarity=0.242 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..+.++ +.-|+||||+|..+|..+...+..+..+|+...
T Consensus 48 ~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 456666 667999999999999999887788999988653
No 349
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=86.92 E-value=1.3 Score=41.30 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=39.7
Q ss_pred CcEEEEcCCCC---------CChhhhhhhhhcCCCeEEEEeCCCh----hhHHHHHHHHHHHhccC----CCeeEEEEcc
Q 015919 152 LDYLVIDMPPG---------TGDIQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKLK----VPCIAVVENM 214 (398)
Q Consensus 152 yD~VIID~pp~---------~~~~~~~~~~~~a~d~viiv~~p~~----~s~~~~~~~~~~l~~~~----~~~~~vV~N~ 214 (398)
+.++|+|+|+- +....+ -.+..++.+++|++.+. .++..+..+.+.+.... .....+|.|+
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl--~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK 283 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFL--RHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANK 283 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHH--HHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEEC
T ss_pred ceEEEecCCCCcccccccchhHHHHH--HHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEEC
Confidence 56889999862 111111 11334788999988763 56677777777776642 2235678898
Q ss_pred ccc
Q 015919 215 CHF 217 (398)
Q Consensus 215 ~~~ 217 (398)
++.
T Consensus 284 ~Dl 286 (342)
T 1lnz_A 284 MDM 286 (342)
T ss_dssp TTS
T ss_pred ccC
Confidence 653
No 350
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.83 E-value=0.5 Score=42.91 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
|+++|.+. +--|+||||++..|+..+ . ....||.|
T Consensus 1 M~~~I~l~-G~~GsGKST~a~~L~~~~--~--~~~~i~~D 35 (301)
T 1ltq_A 1 MKKIILTI-GCPGSGKSTWAREFIAKN--P--GFYNINRD 35 (301)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence 44566665 777999999999888732 2 35566666
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.74 E-value=0.49 Score=39.69 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+++|++. +--|+||||++..||..+ |. ..+|.|.
T Consensus 8 ~~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d~ 42 (196)
T 2c95_A 8 KTNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTGD 42 (196)
T ss_dssp TSCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHHH
Confidence 45677777 556899999999999877 43 3567653
No 352
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.74 E-value=0.32 Score=39.10 Aligned_cols=36 Identities=17% Similarity=-0.006 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
-|.++ +.-|+|||++|..++....+.+..++ +++..
T Consensus 26 ~vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 26 AVWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp CEEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CEEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 34455 67799999999999887777677777 77754
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.64 E-value=0.59 Score=40.33 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.+|++. +.-|+||||++..||..+ | +-.+|.|
T Consensus 5 ~~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 5 APVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp SCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 4678887 667899999999988765 3 3345654
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.61 E-value=0.55 Score=40.47 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~ 83 (398)
+.++++. +.-|+||||++..|+..+.. .+.+++.+|...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6788887 77899999999999987654 355688887654
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.58 E-value=0.39 Score=41.44 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
|+.|.|. +--|+||||++..||..| |. -.+|.|
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 3456666 556999999999999887 44 345654
No 356
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.57 E-value=0.56 Score=44.45 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 015919 51 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 83 (398)
Q Consensus 51 s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~ 83 (398)
.+.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 6899999999999999988763 66788888754
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.47 E-value=0.57 Score=53.52 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+.++.++ +.-|+||||++.++|..+++.|.+|+.+|+....
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 4566665 8889999999999999999999999999998743
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.46 E-value=0.57 Score=41.24 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
.+.+|++. +.-|+||||++..||..+
T Consensus 26 ~~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 46788887 777999999999999776
No 359
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.46 E-value=0.56 Score=39.07 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+++|.+. +--|+||||++..||..+ |. ..+|.|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 4667776 667999999999998876 43 456665
No 360
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.40 E-value=0.61 Score=42.42 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
.++.+.++ +.-|+|||++|..+|..+ |.+++.+++
T Consensus 35 ~p~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 34566666 667999999999999988 677777775
No 361
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=86.32 E-value=0.96 Score=43.74 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=31.2
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
....++|.|+ |--||||++.-|+..|...|+||.+.
T Consensus 49 ~~~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 49 KPAPKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp CSSSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 3457899999 55699999999999999999999874
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.24 E-value=0.5 Score=45.19 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~ 83 (398)
+.++.++ +.-|+||||++.+|+..... .+.+|+.+|...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5677776 77899999999999876654 467899999865
No 363
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.19 E-value=0.74 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
+++..+--|+|||++.+++...|.++|.+||++=
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 5666677899999999999999999999999864
No 364
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.18 E-value=0.78 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|+| ++--|+||||+|..||..+ ..-+|.+|.
T Consensus 9 ~~~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFL-MGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEE-ECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEE-ECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 4556655 5778999999999998875 456788876
No 365
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.11 E-value=0.89 Score=42.60 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=30.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
.+.++ +.-|+||||++..++..+... +..++.+++...
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 66665 778999999999999988776 678888886543
No 366
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.07 E-value=0.71 Score=52.80 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+++|.++ +--|+|||++|.++|....++|.+|+++|+.-.
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 5666666 777999999999999999999999999998864
No 367
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.97 E-value=0.5 Score=39.62 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAY 67 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~ 67 (398)
|+++|++. +.-|+||||++..|+.
T Consensus 1 mg~ii~l~-G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 1 MKKLYIIT-GPAGVGKSTTCKRLAA 24 (189)
T ss_dssp CEEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHhc
Confidence 45667766 7789999999999975
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.84 E-value=0.33 Score=40.32 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 77 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 77 (398)
|++|.+. +--|+||||++..||..| |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 4567666 667999999999887655 55544
No 369
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.83 E-value=0.75 Score=46.55 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH----CCCcEEEE
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 79 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllI 79 (398)
-+.+..+..|+||||++..+...|.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 34555688999999999999988874 46677764
No 370
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=85.78 E-value=0.96 Score=44.53 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
...++|+|+ |-.||||++.-|+..|...|++|.++
T Consensus 106 ~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 140 (498)
T 1e8c_A 106 DNLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVM 140 (498)
T ss_dssp GSSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEE
Confidence 346899999 56699999999999999999999876
No 371
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=85.77 E-value=0.77 Score=42.47 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 77 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 77 (398)
+..++|+|+ |--||||++.-++..|...|+++.
T Consensus 106 ~~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~ 138 (326)
T 3eag_A 106 HHHWVLGVA---GTHGKTTTASMLAWVLEYAGLAPG 138 (326)
T ss_dssp GGSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred cCCCEEEEE---CCCCHHHHHHHHHHHHHHcCCCce
Confidence 346899999 677999999999999999998874
No 372
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=85.60 E-value=0.62 Score=41.35 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|.|++.|+++-+|.|+. +|..|+++|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 56899999999999984 6778999999999999875
No 373
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.44 E-value=0.99 Score=40.95 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCC----cEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~----rVllID 80 (398)
....+.++ +.-|+|||++|..+|..+...+. .++.++
T Consensus 66 ~~~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 66 PTLHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCCEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 34456666 66799999999999999987654 455554
No 374
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=85.30 E-value=0.68 Score=44.67 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=33.8
Q ss_pred CCCeEEEEEc---CCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 42 KISNIVAVSS---CKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s---~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.+|.|.|++ ..-|-||||+++.|+.+|.+.|+++.+.==-|
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~lReP 85 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVTLREP 85 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEEEecC
Confidence 3577777765 48899999999999999999999987653333
No 375
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.27 E-value=0.56 Score=47.04 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHH---HH-CCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~L---a~-~G~rVllIDlD~q 84 (398)
..++|+|+ +-||+||||+|..++... .. -...|.-++++..
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45677765 889999999999987653 22 1235788887653
No 376
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.21 E-value=0.68 Score=43.30 Aligned_cols=40 Identities=18% Similarity=0.040 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~ 83 (398)
.+..+.++ +..|+||||++..++..+... +..++.+++..
T Consensus 43 ~~~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 34555554 888999999999999998764 56666666544
No 377
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=85.00 E-value=1.1 Score=44.60 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+..++|+|+ |-.||||++.-|+..|...|++|.++
T Consensus 144 ~~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~ 178 (535)
T 2wtz_A 144 ERLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLI 178 (535)
T ss_dssp GSSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 356899999 56699999999999999999998875
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.74 E-value=0.56 Score=40.52 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+|+.|.|. +--|+||||++..||..|
T Consensus 4 ~~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 34567766 556899999999999877
No 379
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.74 E-value=0.7 Score=43.27 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~ 83 (398)
.+.++.++ +.-|+||||++..++..++.. |-+|+.||...
T Consensus 130 ~G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 36788887 667999999999999987532 35889999865
No 380
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=84.66 E-value=0.97 Score=43.76 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
..++|+|+ |--||||++.-|+..|...|++|.+.
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45899999 55699999999999999999999875
No 381
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.66 E-value=0.67 Score=38.66 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
++++|++. +.-|+||||++..|+..+
T Consensus 4 ~g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 35677776 778999999999988754
No 382
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=84.64 E-value=0.65 Score=35.20 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllIDlD~ 83 (398)
|++.|.|++. |++|.. ++..|.+.| ++|.++|-++
T Consensus 4 ~~~~v~I~G~-G~iG~~-----~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQM-----IAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECC-SHHHHH-----HHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECC-CHHHHH-----HHHHHHhCCCceEEEEeCCH
Confidence 5678888877 888864 566778889 9999998765
No 383
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.42 E-value=0.77 Score=38.67 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
.|++. +--|+||||++..||..|.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 46665 6678999999999998873
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.39 E-value=0.74 Score=40.81 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
..+.+|++. +--|+||||++-.||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 345788888 667899999999998655
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.39 E-value=0.52 Score=40.92 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
|+.|++. +--|+||||++..||..+ |. ..+|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 4567776 667999999999988765 43 456664
No 386
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.35 E-value=0.77 Score=44.47 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC--CCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllIDlD 82 (398)
...+.++ +..|+||||++..+|..+... |.+++.+++.
T Consensus 130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3455665 778999999999999999865 7888887654
No 387
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.28 E-value=4.6 Score=34.10 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccccCCCceecc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 226 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~~~~~~~~~~ 226 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+... ....+.+|.|+++..... .
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~----~ 158 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR----E 158 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc----c
Confidence 5779999998733222222222456799999988754 4444555444444332 122467888997643211 1
Q ss_pred cCCChHHHHHHHhCC
Q 015919 227 FGRGSGSQVVQQFGI 241 (398)
Q Consensus 227 ~~~~~~~~~~~~~g~ 241 (398)
...+..+.+.+.++.
T Consensus 159 v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 159 VNERQARELADKYGI 173 (217)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHCCC
Confidence 112344555665554
No 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.14 E-value=1.1 Score=48.25 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHH--HH-HCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~--La-~~G~rVllIDlD~q 84 (398)
.++|+|+ +-||+||||+|..++.. .. +-...++.++++..
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 5788876 88999999999999853 23 22446888888653
No 389
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.11 E-value=0.74 Score=39.32 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=19.8
Q ss_pred ccccCCC-eEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 38 EGLQKIS-NIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 38 ~~~~~~~-kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
++++.|. ++|++ .+.-|+||||+...|+..+
T Consensus 12 ~~~~~~~g~~ivl-~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 12 ENLYFQGRKTLVL-IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ----CCSCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 3444444 45554 5888999999999887653
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.09 E-value=5.5 Score=31.72 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCcee
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~ 224 (398)
..+.+.++|+|+...........+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+++.....
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--- 122 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR--- 122 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC---
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc---
Confidence 3466789999874432222222234568888887764 44556666666655543 333 56788997643321
Q ss_pred cccCCChHHHHHHHhCC
Q 015919 225 YPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~ 241 (398)
....+....+.+..+.
T Consensus 123 -~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 123 -EVSVDEGRACAVVFDC 138 (166)
T ss_dssp -CSCHHHHHHHHHHTTC
T ss_pred -ccCHHHHHHHHHHhCC
Confidence 1122334455555553
No 391
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=84.07 E-value=3 Score=42.16 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.++|+|||+--.........+..+|.+++|+..+...+ ......+..+...+++.+.+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 56789999998755443333333557899999999876421 2455566666777887778889997643
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.07 E-value=1.1 Score=42.42 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=29.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.|. +.-|.||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444 6778999999999999998899999998754
No 393
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=83.90 E-value=1.3 Score=43.48 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+..++|.|+ |--||||++.-|+..|...|++|.++
T Consensus 62 ~~~~vI~Vt---GTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 62 RSYPSIHIA---GTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp GSSCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCeEEEEe---CCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 345799999 44589999999999999999999654
No 394
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=83.64 E-value=0.84 Score=40.14 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+|++.|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 5789999999999886 46778899999999998764
No 395
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.58 E-value=1.2 Score=44.17 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.++++. +.-|+||||++..++..+...|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5677776 7789999999999999998889999887764
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.53 E-value=0.82 Score=45.62 Aligned_cols=40 Identities=38% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~ 83 (398)
.+.+|+++ +.-|+||||++..||..|... |.++.++|.|.
T Consensus 368 ~G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 368 QGFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp SCEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 46788887 567899999999999999754 45677788764
No 397
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=83.25 E-value=3.5 Score=38.69 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=17.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLA 66 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA 66 (398)
.++|+++ +..|+||||+.-.|+
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHH
Confidence 4557777 788999999988775
No 398
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=83.25 E-value=0.98 Score=38.68 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=21.9
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
...++++|+|+ +|-|+||+|+|-.+...+
T Consensus 7 ~~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 7 GGAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp BCCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 34456777776 888999999998776654
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.20 E-value=1.3 Score=37.94 Aligned_cols=33 Identities=45% Similarity=0.575 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|++. +--|+||||++..||. .|. .++|.|.
T Consensus 4 ~~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 4 RYIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 4677776 6679999999988875 454 5678763
No 400
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.06 E-value=1.3 Score=43.23 Aligned_cols=70 Identities=6% Similarity=-0.077 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHH-HHHHHHHHHhccCCCeeEEEEccccccC
Q 015919 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFI-DVAKGVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~-~~~~~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
+.+.+.|+|||+-..... .....+..+|.+++|+..+..... .+....+.+..+....+.+|.|+++...
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAA 357 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCT
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCC
Confidence 456789999987422110 011124467999999987654322 1222223333333344678889976433
No 401
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.85 E-value=1 Score=38.52 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+.+++|++. +--|+||||++..|+..+
T Consensus 6 ~~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 346777776 777999999999887654
No 402
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.70 E-value=3.1 Score=40.43 Aligned_cols=66 Identities=8% Similarity=-0.067 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015919 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+.+.|+|||+-..... .....+..+|.+++|+.++.........+++.+.. ..+.+|.|+++..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~---~piivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH---RPLILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT---SCEEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC---CcEEEEEECCCCC
Confidence 456788899977322100 01112345789999988765333333444444433 3467888997643
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.69 E-value=1 Score=39.50 Aligned_cols=35 Identities=40% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.+|++. +--|+||||++..||..| | ...+|.|.
T Consensus 8 ~~~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 8 GSLVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp -CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 34577776 667899999999998877 3 34566654
No 404
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.53 E-value=1.2 Score=38.15 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM 72 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~ 72 (398)
+..+.++ +..|+||||++..++..+...
T Consensus 45 ~~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 3456655 788999999999999888743
No 405
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.49 E-value=0.8 Score=40.69 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.-|.++ +.-|+|||++|..++..+.+.+.+++.+++..
T Consensus 30 ~~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 344555 77799999999999988877777888888764
No 406
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=82.28 E-value=1.1 Score=38.31 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
.|||+|.|+++-||+|+ .++..|+ ++|++|.+++-++
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCc
Confidence 46788999988999886 4566677 7999999998765
No 407
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=81.89 E-value=0.83 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.172 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.|++.|+++-||.|+ .+|..|+++|.+|+++|-+..
T Consensus 27 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 27 SAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 478999988888887 577788999999999997763
No 408
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=81.74 E-value=1.2 Score=38.91 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+|++.|+++-||.|+ .+|..|+++|.+|.++|-++
T Consensus 1 ~~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 1 MERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999999999887 46778889999999998765
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.61 E-value=1.1 Score=38.31 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.|.+. +--|+||||+|..||..+ |. ..+|.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 35554 777999999999998876 43 345554
No 410
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=81.55 E-value=1.7 Score=42.14 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 78 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 78 (398)
.++|+|+ |--||||++.-++..|...|++|.+
T Consensus 112 ~~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 112 SQLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp SEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4899999 5567999999999999999998854
No 411
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=81.53 E-value=2.7 Score=35.14 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+.... ...+.+|.|+++..
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 467899999874332221112244678888888865 445566666666666543 22356778987643
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.47 E-value=0.93 Score=38.85 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.|+|. +--|+||||++..||..+ |..+ +|.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 35555 556999999999999877 5544 5553
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.10 E-value=1.5 Score=38.55 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.+++|.+. +--|+||||+|..|+..+ | ...++.|
T Consensus 28 ~~~~I~l~-G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFL-GAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 45666666 667899999999998776 3 3455554
No 414
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=81.07 E-value=1.5 Score=44.45 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEE
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 80 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllID 80 (398)
++++.+--|+||||+.+.++..|.+ .+.+|+++=
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455577899999999999999887 688888753
No 415
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.02 E-value=0.85 Score=38.80 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+++|.+. +--|+||||++..|+..+
T Consensus 12 ~~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 4667666 667899999999998866
No 416
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.85 E-value=1.3 Score=37.36 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG 73 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G 73 (398)
.++++. +.-|+||||+..-|+..+...|
T Consensus 2 ~~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 456777 7789999999999999998667
No 417
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=80.64 E-value=1.9 Score=42.03 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+..+|.++ +--|+||||++..||..|...+.++..++.|
T Consensus 38 ~~~~Ivlv-GlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMV-GLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 34455555 6679999999999999998888888777654
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.60 E-value=2.4 Score=37.22 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++-|.++ +.-|+|||++|..+|..+ +.++..+++..
T Consensus 39 ~~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 3455666 677999999999998876 55666666543
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=80.48 E-value=1.2 Score=38.52 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.|.|. +--|+||||++..||..+ |. ..++.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 45555 667899999999999877 44 345653
No 420
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.45 E-value=1.2 Score=48.71 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHH----CCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllIDlD~ 83 (398)
...++|+++ +-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 446788877 89999999999988876532 234577888765
No 421
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=80.24 E-value=1.7 Score=38.92 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+|.|++.|+++-||.|+. +|..|+++|.+|.++|-+.
T Consensus 18 ~~~~k~vlVTGas~gIG~a-----ia~~La~~G~~V~~~~r~~ 55 (272)
T 2nwq_A 18 SHMSSTLFITGATSGFGEA-----CARRFAEAGWSLVLTGRRE 55 (272)
T ss_dssp ---CCEEEESSTTTSSHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCcCcEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 3445899999999999985 6778889999999998764
No 422
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=80.23 E-value=1.5 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.|++.|+++-||.|+ .+|..|+++|.+|+++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4689999999999987 57788999999999998764
No 423
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=80.11 E-value=1.1 Score=40.23 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..|++.|+++-||.|+ .+|..|+++|.+|+++|-+.
T Consensus 27 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGR-----AVAVALAGAGYGVALAGRRL 62 (272)
T ss_dssp -CCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 3589999999998887 46778889999999998764
No 424
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.97 E-value=1.3 Score=37.30 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+++|++. +.-|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 5678877 667999999998887765
No 425
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.90 E-value=2.6 Score=37.56 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 81 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDl 81 (398)
..+.+++|. +.-|+||||+...|+..+... .-+|.+.+-
T Consensus 23 ~~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 23 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp CSSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 346788877 677999999999999888753 446665543
No 426
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=79.86 E-value=4.7 Score=33.58 Aligned_cols=86 Identities=7% Similarity=-0.021 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC-----CCeeEEEEccccccC-CCce
Q 015919 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDA-DGKR 223 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~-----~~~~~vV~N~~~~~~-~~~~ 223 (398)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...++.+.... ...+.+|.|+++... ..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-- 149 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH-- 149 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc--
Confidence 5678999998743222222222446788999988754 45566666666665431 224678889976433 11
Q ss_pred ecccCCChHHHHHHHhC
Q 015919 224 YYPFGRGSGSQVVQQFG 240 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~g 240 (398)
....+....+.+.++
T Consensus 150 --~v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 150 --QVRLDMAQDWATTNT 164 (208)
T ss_dssp --CCCHHHHHHHHHHTT
T ss_pred --cCCHHHHHHHHHHcC
Confidence 112234555666655
No 427
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.85 E-value=1.3 Score=37.36 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+++|++. +--|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 5788887 677999999999988764
No 428
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=79.82 E-value=1.3 Score=38.39 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|.|+|.|+++-||.|+ ++|..|+++|++|.++|-++
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 35688999988888886 56778888999999998654
No 429
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.73 E-value=2.1 Score=38.59 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++-+.++ +.-|+|||++|..+|..+ +.+++.+++..
T Consensus 50 ~~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 3455566 677999999999999987 56777777654
No 430
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.71 E-value=1.7 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.007 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++.| .+-.|+||||++..++..+. .+++.+++..
T Consensus 31 ~~v~i-~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLV-LGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEE-ECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 45555 47789999999999987753 4588888864
No 431
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=79.70 E-value=2.8 Score=40.78 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.||+|.+ |.|+. -.+||..|+..|+.|.+||-|+.
T Consensus 2 ~~M~iiI~-----G~G~v--G~~la~~L~~~~~~v~vId~d~~ 37 (461)
T 4g65_A 2 NAMKIIIL-----GAGQV--GGTLAENLVGENNDITIVDKDGD 37 (461)
T ss_dssp CCEEEEEE-----CCSHH--HHHHHHHTCSTTEEEEEEESCHH
T ss_pred CcCEEEEE-----CCCHH--HHHHHHHHHHCCCCEEEEECCHH
Confidence 34665554 44543 45688899999999999999984
No 432
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=79.45 E-value=2.2 Score=41.13 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
.++|+|+ |--||||++.-|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 6799999 55689999999999999999998754
No 433
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=79.30 E-value=1.3 Score=38.37 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
|+|++.|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 1 ~~k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 1 MERSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence 4578999988888886 567778888999999987764
No 434
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=79.21 E-value=1.3 Score=38.43 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578889988888887 46678889999999998764
No 435
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.20 E-value=1.1 Score=38.27 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.|.+. +--|+||||+|..||..+ |. ..+|.|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 35554 777999999999988654 43 345654
No 436
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=79.17 E-value=1.6 Score=38.10 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+|++.|+++-||.|+ ++|..|+++|.+|.++|-+.
T Consensus 1 ~~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 36 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA 36 (250)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4688999988888887 56778888999999998654
No 437
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=79.16 E-value=1.5 Score=38.65 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+|++.|+++-||.|+ .+|..|+++|.+|.++|-++
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (256)
T 1geg_A 1 MKKVALVTGAGQGIGK-----AIALRLVKDGFAVAIADYND 36 (256)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4688999999999887 46778899999999998654
No 438
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=79.07 E-value=1.9 Score=45.12 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEE
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 79 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllI 79 (398)
++++.+--|+||||+.+.++..|.+ .|.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4555688899999999999999887 68888875
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.05 E-value=1.3 Score=39.21 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++|++. +.-|+||||++..||..| |. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 5677777 667899999999999877 32 4667664
No 440
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=79.01 E-value=1.6 Score=38.34 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++.|+++-||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCc
Confidence 5788999888888875 6677888999999998765
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.80 E-value=1.9 Score=37.30 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+.+|+|.+. +--|+||+|.|..||..+
T Consensus 27 ~k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 357888888 566999999999999876
No 442
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.59 E-value=0.53 Score=41.97 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=21.4
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
...+.++.|+|. +-=|+||||++..||..|
T Consensus 19 ~~~~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 19 SEGTRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp ----CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred ccccCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 334456788887 556899999999888776
No 443
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=78.41 E-value=2.6 Score=39.73 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 80 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllID 80 (398)
..+.+|+|. +.-|+||||+...|+..+... ..+|+.++
T Consensus 134 ~~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 134 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 345677777 677999999999999988864 45677766
No 444
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=78.17 E-value=1.9 Score=33.98 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.|.|+ |.|. +...+|..|+++|++|.++|-|+.
T Consensus 7 ~~v~I~----G~G~--iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 7 YEYIVI----GSEA--AGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp CSEEEE----CCSH--HHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CEEEEE----CCCH--HHHHHHHHHHHCCCeEEEEECCHH
Confidence 445556 3354 566788899999999999998763
No 445
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=77.75 E-value=1.4 Score=38.82 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++.|+++-||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMG-----SALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHHH-----HHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5789999999999985 6778889999999988765
No 446
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=77.45 E-value=1.8 Score=38.56 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
...|++.|+++-||.|+ .+|..|+++|.+|+++|.+..
T Consensus 12 ~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred CCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 34689999999999887 577889999999999998764
No 447
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=77.42 E-value=2.5 Score=41.19 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=41.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEccccc
Q 015919 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+--.........+..+|.+++|+..+...+ ......+..+...+++.+-+++|+++.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45679999999743322222222456899999999876432 234455556666788767788999765
No 448
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.33 E-value=2.4 Score=39.63 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
+..+.|.++ +.-|+|||++|..+|..+ |..++.+++
T Consensus 115 ~~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp SCCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 456677777 667999999999998764 566666655
No 449
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=77.22 E-value=1.9 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 578999999999887 57788899999999998764
No 450
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=76.99 E-value=2.3 Score=42.07 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 78 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 78 (398)
+..++|+|+ |--||||++.-++..|...|+++.+
T Consensus 120 ~~~~vIaVT---GTnGKTTTt~li~~iL~~~G~~~~~ 153 (524)
T 3hn7_A 120 QSRHVIAVA---GTHGKTTTTTMLAWILHYAGIDAGF 153 (524)
T ss_dssp GGSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred ccCcEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 346899999 5669999999999999999988754
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.96 E-value=1.6 Score=37.83 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.+++|+|. +.-|+||||++..|+.. |.+|.+..-+
T Consensus 18 ~~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 456889988 66789999998887765 5567666443
No 452
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=76.96 E-value=2.2 Score=37.41 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4689999988888886 67888999999999998754
No 453
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=76.94 E-value=3.8 Score=38.16 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 87 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~ 87 (398)
||+|.+.+ || .....++..+.+.|++|+++|.|+....
T Consensus 1 MK~I~ilG--gg----~~g~~~~~~Ak~~G~~vv~vd~~~~~~~ 38 (363)
T 4ffl_A 1 MKTICLVG--GK----LQGFEAAYLSKKAGMKVVLVDKNPQALI 38 (363)
T ss_dssp CCEEEEEC--CS----HHHHHHHHHHHHTTCEEEEEESCTTCTT
T ss_pred CCEEEEEC--CC----HHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 67888884 22 3456677777889999999999986544
No 454
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=76.68 E-value=2.1 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Q 015919 46 IVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
.+++. +.-|+||||+...|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 45665 7789999999999998884
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=76.66 E-value=1.2 Score=40.91 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++++++. +--|+||||+.-.|+... .|+|+.+|--|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 4566665 667899999998877653 689999998775
No 456
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.49 E-value=2.9 Score=37.12 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
..+.+.++ +.-|+|||++|..+|..+ |..++.++
T Consensus 63 ~~~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLE-GPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 34556655 777999999999998874 45555554
No 457
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=76.47 E-value=3.1 Score=40.50 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCc-EEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r-VllIDlD~ 83 (398)
.++|+|+ |--||||++.-|+..|...|++ ++.+.-..
T Consensus 118 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~p~~~igg~~ 155 (475)
T 1p3d_A 118 RHGIAVA---GTHGKTTTTAMISMIYTQAKLDPTFVNGGLV 155 (475)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 4899999 5568999999999999999987 66565444
No 458
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.37 E-value=1.7 Score=36.75 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
++++++. +.-|+||||+.-.|+..+.
T Consensus 4 g~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 4677777 7779999999999987663
No 459
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.34 E-value=1.3 Score=36.99 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHH
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
+++++. +.-|+||||+.-.|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 566766 7779999999999988765
No 460
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.28 E-value=2.4 Score=39.83 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
...|.++ +--|+|||++|..+|..+ |.++..+|+..
T Consensus 72 ~~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 72 KSNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 4456666 667999999999999877 66777777644
No 461
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.26 E-value=1.8 Score=39.65 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+++.|. +..|+||||++..++..+ | ++.+|+..
T Consensus 32 ~~v~i~-G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLL-GIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEE-CCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 555555 888999999999987654 3 88888864
No 462
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.19 E-value=3.5 Score=37.00 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
..++.+.++ +.-|+||||+|..+|..+ +....-++
T Consensus 52 ~~~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~ 86 (297)
T 3b9p_A 52 APAKGLLLF-GPPGNGKTLLARAVATEC---SATFLNIS 86 (297)
T ss_dssp CCCSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCCCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEee
Confidence 345677766 677999999999998765 44444443
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.16 E-value=1.7 Score=37.08 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=19.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA 74 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~ 74 (398)
++.|.|. +.-|+||||+|..|+ ++|.
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~ 59 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGH 59 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTC
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCC
Confidence 5666666 777999999887665 5565
No 464
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=76.07 E-value=2.4 Score=37.37 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 9 ~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~ 43 (260)
T 2ae2_A 9 GCTALVTGGSRGIGY-----GIVEELASLGASVYTCSRNQ 43 (260)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 588999999999887 46778888999999998664
No 465
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=76.06 E-value=2.6 Score=41.06 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 78 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 78 (398)
.++|+|+ |--||||++.-|+..|...|++|.+
T Consensus 114 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTV 145 (469)
T ss_dssp CCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 5799999 5568999999999999999998743
No 466
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=76.05 E-value=2 Score=39.75 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCC-cEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllIDlD~q 84 (398)
|++.|+|.+. |.+|-+ +|..|+..|+ +|.++|.|..
T Consensus 13 ~~~kI~ViGa-G~vG~~-----iA~~la~~g~~~V~L~Di~~~ 49 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGST-----IALLLGQKDLGDVYMFDIIEG 49 (328)
T ss_dssp CCCEEEEECC-SHHHHH-----HHHHHHHTTCCEEEEECSSTT
T ss_pred CCCEEEEECC-CHHHHH-----HHHHHHhCCCCeEEEEECCHH
Confidence 4467899965 877766 6778888898 9999999863
No 467
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=76.01 E-value=2.3 Score=37.01 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+|++.|+++-||.|+. +|..|+++|.+|.++|-++.
T Consensus 6 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 35789999888888874 67788999999999998764
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=75.98 E-value=2.4 Score=36.87 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+|++. +--|+||||++..||..| | ...+|.|.
T Consensus 15 ~~~~i~i~-G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 15 KTIQIAID-GPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp CCCEEEEE-CSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 45678887 667899999999888766 4 34677764
No 469
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=75.97 E-value=2.4 Score=37.88 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|++.|+++-||.|+ .+|..|+++|.+|+++|-+.
T Consensus 30 ~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 30 GASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp TEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 589999999988886 46778889999999998764
No 470
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.96 E-value=3.6 Score=36.14 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
++-+.++ +.-|+||||++..+|..+ +..++.++
T Consensus 45 ~~~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 45 PKGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 3446666 677999999999999876 44554444
No 471
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=75.72 E-value=1.6 Score=38.57 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|.|++.|+++-||.|+. +|..|+++|.+|.++|-+.
T Consensus 1 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 36 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRG-----ISEKLAADGFDIAVADLPQ 36 (258)
T ss_dssp -CCEEEEETTTSHHHHH-----HHHHHHHHTCEEEEEECGG
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCc
Confidence 35789999999998874 6677888899999998765
No 472
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.60 E-value=3 Score=37.14 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
.++-+.++ +..|+||||++..+|..+ +.++..+++
T Consensus 50 ~~~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 50 PPKGILLY-GPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CCSEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 34556666 777999999999887765 556666654
No 473
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=75.51 E-value=1.5 Score=38.05 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCC-CcEEEEEecCC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllIDlD~q 84 (398)
.||++|.|+++-||+|+ .++..|+++| ++|.+++-++.
T Consensus 21 ~~mk~vlVtGatG~iG~-----~l~~~L~~~G~~~V~~~~R~~~ 59 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIAR-----HVINQLADKQTIKQTLFARQPA 59 (236)
T ss_dssp -CCEEEEEETTTSHHHH-----HHHHHHTTCTTEEEEEEESSGG
T ss_pred CcccEEEEEeCCcHHHH-----HHHHHHHhCCCceEEEEEcChh
Confidence 46789999999999887 4667788899 89999987653
No 474
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=75.46 E-value=2.4 Score=40.22 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=24.7
Q ss_pred cEEEEEecCCCeeEEechhhhhcCCCCC
Q 015919 305 KAIKVKVPQSDEEFFLHPATVRRNDRSA 332 (398)
Q Consensus 305 ~~l~v~~~d~~~~~~~~~~~LR~~c~c~ 332 (398)
..+.|.|+||.. +.|++.|||.+|.++
T Consensus 73 ~~l~i~w~dgH~-s~y~~~~L~~~~~~~ 99 (388)
T 3o2g_A 73 KKVYITWPDEHY-SEFQADWLKKRCFSK 99 (388)
T ss_dssp SEEEEECTTSCE-EEEEHHHHHHTCCSH
T ss_pred CEEEEEecCCCc-eEeCHHHHHhhcCCc
Confidence 789999999997 899999999998765
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=75.45 E-value=1.4 Score=42.32 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+++|.++ +--|+||||++..|+..+ ....||.|.
T Consensus 257 ~~~lIil~-G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAV-GFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp SCCEEEEE-SCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 45566555 777899999999887644 234556554
No 476
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=75.37 E-value=2.4 Score=41.55 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCc-EEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFD 80 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r-VllID 80 (398)
+..++|+|+ |--||||++.-++..|...|++ +.++-
T Consensus 120 ~~~~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~~~g 156 (494)
T 4hv4_A 120 RYRHGIAVA---GTHGKTTTTAMLSSIYAEAGLDPTFVNG 156 (494)
T ss_dssp TTSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCEEEEe---cCCChHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345799999 6679999999999999999985 44543
No 477
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.27 E-value=2.5 Score=41.68 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.+.+.++ +.-|+||||+|..+|..+ |..++-+++.
T Consensus 77 ~~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 3566665 777999999999998887 7777777654
No 478
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=75.24 E-value=3.5 Score=35.63 Aligned_cols=38 Identities=16% Similarity=0.004 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
.++.+..++ +-=|.||||....++..+..+|++|+++=
T Consensus 26 ~~G~I~vit-G~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECIT-GSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 446666666 44588999999999999999999999983
No 479
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=75.22 E-value=2 Score=38.24 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.|++.|+++-||.|+ .+|..|+++|.+|+++|-+.
T Consensus 3 ~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 38 (264)
T 3tfo_A 3 MDKVILITGASGGIGE-----GIARELGVAGAKILLGARRQ 38 (264)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEeCCccHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 3589999999999887 46778899999999998764
No 480
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=75.13 E-value=1.9 Score=40.00 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCC-cEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~-rVllIDlD~q 84 (398)
++.|+|.+. |.+|-+ +|..|+..|+ +|.++|.|..
T Consensus 9 ~~kI~VIGa-G~vG~~-----lA~~la~~g~~~V~L~D~~~~ 44 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGT-----MGYLCALRELADVVLYDVVKG 44 (331)
T ss_dssp CCEEEEECC-SHHHHH-----HHHHHHHHTCCEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHH-----HHHHHHhCCCCeEEEEECChh
Confidence 346888866 888866 6777777787 8999999863
No 481
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=75.12 E-value=3.6 Score=40.31 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCc-EEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r-VllIDlD~ 83 (398)
.++|+|+ |--||||++.-|+..|...|++ ++.+.-..
T Consensus 119 ~~vI~VT---GTnGKTTTt~ml~~iL~~~G~~p~~~igg~~ 156 (491)
T 2f00_A 119 RHGIAIA---GTHGKTTTTAMVSSIYAEAGLDPTFVNGGLV 156 (491)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCEEEECCee
Confidence 5899999 5568999999999999999987 66565444
No 482
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=75.12 E-value=2.4 Score=37.97 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|++.|+++-||.|+ .+|..|+++|.+|+++|-+.
T Consensus 29 gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 589999999999997 57778899999999998764
No 483
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=75.07 E-value=2.5 Score=37.69 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
..|++.|+++-||.|+ .+|..|+++|.+|+++|
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG 62 (273)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence 3689999999999887 57788999999999998
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.06 E-value=1.7 Score=37.94 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
++.|+|. +-=|+||||++..|+..|.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 4677777 4568999999999998773
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.03 E-value=3.2 Score=38.13 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
.++-|.++ +.-|+|||++|..+|..+ .+..++.+++
T Consensus 44 ~~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 44 PWRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp CCSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred CCceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 34667777 667999999999999876 2445555544
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=74.83 E-value=2.8 Score=34.94 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcE
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 76 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 76 (398)
++-|.+. +.-|+||||+|..|.. +|++.
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~l 43 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQL 43 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCEE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCeE
Confidence 4566666 6678999999887654 67753
No 487
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=74.70 E-value=2.5 Score=36.63 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+|++.|+++-||.|+ .+|..|+++|.+|.++|-++.
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 478999988888886 567788899999999998764
No 488
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=74.69 E-value=2.8 Score=37.27 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+|++.|+++-||.|+ .+|..|+++|.+|+++|-+..
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 11 NKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 589999999888886 567788999999999997753
No 489
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=74.63 E-value=2.5 Score=37.94 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=32.4
Q ss_pred cccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 35 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 35 ~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|.+++. .|++.|+++-+|.|+. +|..|+++|.+|++.|-+.
T Consensus 22 ~Ms~rL~--gKvalVTGas~GIG~a-----iA~~la~~Ga~V~i~~r~~ 63 (273)
T 4fgs_A 22 SMTQRLN--AKIAVITGATSGIGLA-----AAKRFVAEGARVFITGRRK 63 (273)
T ss_dssp ---CTTT--TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred hhcchhC--CCEEEEeCcCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 3444444 5899999999999975 6788999999999999764
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.61 E-value=1.2 Score=38.03 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+|++. +--|+||||++..||..+ | .-++|.|.
T Consensus 4 ~~i~i~-G~~gsGkst~~~~l~~~~---g--~~~~~~d~ 36 (219)
T 2h92_A 4 INIALD-GPAAAGKSTIAKRVASEL---S--MIYVDTGA 36 (219)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CceecCCh
Confidence 466666 667899999998887755 4 34678764
No 491
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=74.35 E-value=1.2 Score=41.25 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCC
Q 015919 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG 73 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G 73 (398)
+.|+|- +==|+||||++..|+..|..+|
T Consensus 5 ~fI~~E-G~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 5 LRVYID-GPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEC-SCTTSSHHHHHHHHTC----CC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHhhhCC
Confidence 456665 4458999999999999998776
No 492
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=74.32 E-value=2.2 Score=37.65 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.++|++.|+++-||.|+ .+|..|+++|.+|++++-+.
T Consensus 5 ~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~v~~~~~~~ 41 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGK-----QVTEKLLAKGYSVTVTYHSD 41 (264)
T ss_dssp -CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred cccCEEEEeCCCchhHH-----HHHHHHHHCCCEEEEEcCCC
Confidence 46789999988888886 56778889999999987654
No 493
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=74.31 E-value=2.4 Score=37.50 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+|++.|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 27 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 27 QQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp TCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 4689999999999886 567788999999999997754
No 494
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=74.19 E-value=2.2 Score=38.26 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
++|++.|+++-||.|+ .+|..|+++|.+|+++|-+
T Consensus 24 ~~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~r~ 58 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGL-----AIARTLAKAGANIVLNGFG 58 (281)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 3589999999998886 5778889999999998763
No 495
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=74.08 E-value=2.5 Score=37.16 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 7 ~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 7 NATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp SCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 588999988888886 57778889999999998765
No 496
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=74.06 E-value=2.7 Score=37.48 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..|++.|+++-||.|+ .+|..|+++|.+|+++|.+.
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~ 65 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGA-----AIAKRLALEGAAVALTYVNA 65 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCC
Confidence 4689999999888887 57788999999999987654
No 497
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.00 E-value=2.5 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHH
Q 015919 42 KISNIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+.+.++++. +.-|+||||+.-.|+..+
T Consensus 31 ~~Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 346788888 677999999999999987
No 498
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=73.95 E-value=2.7 Score=36.26 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|++.|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALARDGYALALGARSV 36 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 678999988888876 56778889999999998664
No 499
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=73.88 E-value=3 Score=39.95 Aligned_cols=31 Identities=39% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015919 52 CKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 52 ~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.-|+|||++...+...+.+.|.+|+++|..
T Consensus 60 G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 60 GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5568899999888888888899999999864
No 500
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=73.87 E-value=1.6 Score=36.55 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=24.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015919 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|.|+ +-.|+||||+|..||.. |.+|+.|+...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 3444 56789999999998754 77899988765
Done!