Citrus Sinensis ID: 015921

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40

MIFESVGPLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLPNRLQCQGLKALNKTSFQASSIGNSISFVTVFTIYNTSLDVHVDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGRTKYDF

cccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccEEEcccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEccEEccccHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEcccHHHHcccccccEEEEEccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccEEEEEEcccccccccccccccccccccEEEEEEEcccHHHcHHHHHHHcccccccccccEEEccccccccc

ccEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccEEccccccccccccccccccEEEEEEEEEEEcccccccccccccccEEEcccEccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEccHHHHHHcccccEEEEEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHccccEEEEEcccEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccc

mifesvgplkgslgmracggcrrflfflpLVFFLPYLLSVLELHEksvvedlprknrqkfdhlilgpaagqrlpnrlqcqglkalnktsfqassignsISFVTVFTIYNTsldvhvdsrasnmvtvgnasysktERSMAILNVFINFIqvtmpksdvfiltdpasdlsmprkgvtiypihgeysrDKLMLQRIRSYITFLERRIREhsqgqghinhyvftdsdiavvdDLGHIFHDYQNFHLALTfrnnkdqplnsgfiavrgtpdgISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVkshpsfdarrftkaqpfveDIIGASVLflpcatynwtppegagqfhgmpldvKVVHFKGSRKRLMLEswnffssssdiSDMLCLILMsgrtkydf

mifesvgplkgslgMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLIlgpaagqrlpNRLQCQGLKALNKTSFQASSIGNSISFVTVFTIYNTSLDVHVDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTdpasdlsmprkgvtiypihgeysrdklmLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFfssssdisdMLCLILMsgrtkydf

MIFESVGPLKGSLGMRACGGCRRflfflplvfflpyllsvlELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLPNRLQCQGLKALNKTSFQASSIGNSISFVTVFTIYNTSLDVHVDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNffssssdisdMLCLILMSGRTKYDF

**********GSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLPNRLQCQGLKALNKTSFQASSIGNSISFVTVFTIYNTSLDVHVDSRASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMS*******

******GPLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLEL*****************DHLILGPAAGQRLPNRLQ******************NSISFVTVFTIYNTSLD***************ASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIRE****QGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDA**********EDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGR*****

****SV*PLKGSLGMRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPR*NRQKFDHLILGPAAGQRLPNRLQCQGLKALNKTSFQASSIGNSISFVTVFTIYNTS*********SNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFSSSSDISDMLCLILMSGRT****

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iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		398
225454022		388	PREDICTED: uncharacterized protein LOC10	0.964	0.989	0.768	1e-176
224129974		369	predicted protein [Populus trichocarpa]	0.909	0.981	0.776	1e-166
255562808		388	conserved hypothetical protein [Ricinus	0.957	0.981	0.741	1e-165
255541282		388	conserved hypothetical protein [Ricinus	0.957	0.981	0.736	1e-164
356545145		432	PREDICTED: uncharacterized protein LOC10	0.959	0.884	0.707	1e-155
449432261		387	PREDICTED: uncharacterized protein LOC10	0.869	0.894	0.731	1e-149
357471691		350	hypothetical protein MTR_4g053430 [Medic	0.851	0.968	0.752	1e-147
356517294		352	PREDICTED: uncharacterized protein LOC10	0.874	0.988	0.734	1e-145
297828243		391	hypothetical protein ARALYDRAFT_903971 [	0.949	0.966	0.670	1e-143
30689992		392	uncharacterized protein [Arabidopsis tha	0.949	0.964	0.663	1e-142

>gi\|225454022\|ref\|XP_002281030.1\| PREDICTED: uncharacterized protein LOC100259142 [Vitis vinifera] gi\|296089202\|emb\|CBI38905.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/388 (76%), Positives = 332/388 (85%), Gaps = 4/388 (1%)

Query: 15  MRACGGCRRFLFFLPLVFFLPYLLSVLELHEKSVVEDLPRKNRQKFDHLILGPAAGQRLP 74
           MR C G RR L+ LP V F+PY LSVLELH+ S +E   +K+ +KFDHL+LGPAAGQ L 
Sbjct: 1   MRVCSGWRRRLYCLPFVLFIPYFLSVLELHQSSTIEGSQKKHSKKFDHLVLGPAAGQGLH 60

Query: 75  NRLQCQGLKALNKTSFQASS----IGNSISFVTVFTIYNTSLDVHVDSRASNMVTVGNAS 130
           +RLQCQG KALNKT    SS     G SI+ +TVFTIYN+SL +H D R+S++VTVGNAS
Sbjct: 61  DRLQCQGTKALNKTHIATSSHESNFGESIALITVFTIYNSSLALHADGRSSDLVTVGNAS 120

Query: 131 YSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLML 190
           YSK ERSMAILNVFINFIQ TMP+S+V ILTDPAS+ S+ R  VTIYPI GEYSRDKLML
Sbjct: 121 YSKMERSMAILNVFINFIQATMPQSNVIILTDPASEFSLHRDRVTIYPIQGEYSRDKLML 180

Query: 191 QRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNK 250
           QRIRSYI FLE ++ EHSQG GHINHY+FTDSDIAVVDDLG IF  + NFH+ALTFRNNK
Sbjct: 181 QRIRSYIVFLETKLEEHSQGHGHINHYIFTDSDIAVVDDLGQIFQSHPNFHVALTFRNNK 240

Query: 251 DQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFD 310
           +QPLNSGFIAVRGTPDGI RAK+FL+EVL+VYSS++MNASRMLGDQLALAWVVKSHP FD
Sbjct: 241 EQPLNSGFIAVRGTPDGILRAKLFLQEVLKVYSSRFMNASRMLGDQLALAWVVKSHPYFD 300

Query: 311 ARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE 370
            +RF+K Q F+EDI G SVLFLPCA YNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE
Sbjct: 301 TKRFSKPQAFLEDIGGTSVLFLPCAIYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLE 360

Query: 371 SWNFFSSSSDISDMLCLILMSGRTKYDF 398
           SWNFF SSSDISDMLCLILMSGRTKYDF
Sbjct: 361 SWNFFISSSDISDMLCLILMSGRTKYDF 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224129974\|ref\|XP_002320717.1\| predicted protein [Populus trichocarpa] gi\|222861490\|gb\|EEE99032.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255562808\|ref\|XP_002522409.1\| conserved hypothetical protein [Ricinus communis] gi\|223538294\|gb\|EEF39901.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|255541282\|ref\|XP_002511705.1\| conserved hypothetical protein [Ricinus communis] gi\|223548885\|gb\|EEF50374.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356545145\|ref\|XP_003541005.1\| PREDICTED: uncharacterized protein LOC100785469 [Glycine max]	Back alignment and taxonomy information

>gi\|449432261\|ref\|XP_004133918.1\| PREDICTED: uncharacterized protein LOC101215082 [Cucumis sativus] gi\|449480062\|ref\|XP_004155788.1\| PREDICTED: uncharacterized protein LOC101230110 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357471691\|ref\|XP_003606130.1\| hypothetical protein MTR_4g053430 [Medicago truncatula] gi\|355507185\|gb\|AES88327.1\| hypothetical protein MTR_4g053430 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356517294\|ref\|XP_003527323.1\| PREDICTED: uncharacterized protein LOC100794487 [Glycine max]	Back alignment and taxonomy information

>gi\|297828243\|ref\|XP_002882004.1\| hypothetical protein ARALYDRAFT_903971 [Arabidopsis lyrata subsp. lyrata] gi\|297327843\|gb\|EFH58263.1\| hypothetical protein ARALYDRAFT_903971 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30689992\|ref\|NP_850432.1\| uncharacterized protein [Arabidopsis thaliana] gi\|330255444\|gb\|AEC10538.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		398
TAIR\|locus:2050911		392	AT2G45320 "AT2G45320" [Arabido	0.972	0.987	0.620	2.4e-124

TAIR\|locus:2050911 AT2G45320 "AT2G45320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 247/398 (62%), Positives = 289/398 (72%)

Query:     6 VGPLKGSLGMRACGGCRRXXXXXXXXXXXXXXXXXXELHEKSVVEDLPRK-NRQKFDHLI 64
             +G  +    MR+C G RR                  +    S   +  R    +K DHL+
Sbjct:     1 MGSRRDYRSMRSCSGWRRILLLIPVLFLLPHLSSLVDFSSDSATRNDARTIPNKKLDHLV 60

Query:    65 LGPAAGQRLPNRLQCQGLKALNKTSFQASSI---GNSISFVTVFTIYNTSLDVHVDSRAS 121
             LGP AGQ L +R  C+G KALNKT    S +   GN +SFVTVFT+YNTSL    + ++S
Sbjct:    61 LGPVAGQGLSDRFHCRGTKALNKTHGSTSHVSGAGNGVSFVTVFTVYNTSLG---NVKSS 117

Query:   122 NMVTV-GNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIH 180
             N V+V GN +YSK ERSMA+LN F NFIQVTMPKS+V ILTDPASDLS+ +  V + P+ 
Sbjct:   118 NPVSVVGNVTYSKPERSMAVLNAFANFIQVTMPKSNVVILTDPASDLSIQQSNVILQPVQ 177

Query:   181 GEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNF 240
             G+YSR  LMLQRIRSYITFLE ++ ++   +G INHY+FTDSDIAVVDD+G IF  + +F
Sbjct:   178 GDYSRGNLMLQRIRSYITFLEMKLEKN---EGGINHYIFTDSDIAVVDDVGTIFDKHSSF 234

Query:   241 HLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALA 300
             HLALTFRNNKDQPLNSGFIAVRGT +GI RAK+FLEEVL+ Y +KYM ASRMLGDQLAL 
Sbjct:   235 HLALTFRNNKDQPLNSGFIAVRGTREGILRAKVFLEEVLKAYKTKYMKASRMLGDQLALV 294

Query:   301 WVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHF 360
              VVKSH SFDA+RFTK Q F E+I GASVLFLPCA YNWTPPEGAGQFHGMPLDVK+VHF
Sbjct:   295 SVVKSHASFDAKRFTKPQAFTEEIAGASVLFLPCALYNWTPPEGAGQFHGMPLDVKIVHF 354

Query:   361 KGSRKRLMLESWNXXXXXXXXXXMLCLILMSGRTKYDF 398
             KGSRKRLMLE+WN          MLCL+L SGRTKYDF
Sbjct:   355 KGSRKRLMLEAWNFYKSTSNIPDMLCLVLGSGRTKYDF 392


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      398       370   0.00086  117 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  242 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.15u 0.09s 31.24t   Elapsed:  00:00:01
  Total cpu time:  31.15u 0.09s 31.24t   Elapsed:  00:00:01
  Start:  Tue May 21 02:38:20 2013   End:  Tue May 21 02:38:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		398
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	99.28
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	99.25
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	99.08
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.03
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	98.81
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	98.79
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	98.71
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	98.62
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	98.62
PLN00176		333	galactinol synthase	98.51
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	98.44
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	98.11
PLN02769		629	Probable galacturonosyltransferase	98.06
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	97.96
PLN02659		534	Probable galacturonosyltransferase	97.77
PLN02867		535	Probable galacturonosyltransferase	97.71
PLN02870		533	Probable galacturonosyltransferase	97.64
PLN02910		657	polygalacturonate 4-alpha-galacturonosyltransferas	97.49
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.4
PLN02829		639	Probable galacturonosyltransferase	97.4
PLN02718		603	Probable galacturonosyltransferase	97.25
PLN02742		534	Probable galacturonosyltransferase	97.19
PLN02523		559	galacturonosyltransferase	97.17
PF03414		337	Glyco_transf_6: Glycosyltransferase family 6; Inte	94.23
cd02515		271	Glyco_transf_6 Glycosyltransferase family 6 compri	92.02
PLN03181		453	glycosyltransferase; Provisional	86.31
PF05704		276	Caps_synth: Capsular polysaccharide synthesis prot	83.8
PF03314		222	DUF273: Protein of unknown function, DUF273; Inter	82.04

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

Probab=99.28  E-value=4.2e-11  Score=109.03  Aligned_cols=193  Identities=23%  Similarity=0.297  Sum_probs=119.0

Q ss_pred             HHHHHHHHhhCC-CccEEEEeCCCCCC---C------CCCCceEEEecCCccCchhH---HHHHHHHHHHHHHHHHHhhc
Q 015921          142 NVFINFIQVTMP-KSDVFILTDPASDL---S------MPRKGVTIYPIHGEYSRDKL---MLQRIRSYITFLERRIREHS  208 (398)
Q Consensus       142 n~Fi~sIrvsmP-~s~VVILTD~~T~~---s------l~~~~~~v~pi~g~YSR~~L---mlQRi~sYi~fLkT~i~e~~  208 (398)
                      -+-+.||...++ .-++.||||.-++-   .      ..+.++++++++.......-   ..-...+|.|+.   |.++-
T Consensus        17 ~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~---i~~ll   93 (246)
T cd00505          17 IVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLH---LPNLV   93 (246)
T ss_pred             HHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccceeHHHH---HHHHh
Confidence            455778877776 46899999875531   1      11235778888532221100   011223344443   33331


Q ss_pred             cCCCccccEEEeecCeeeecCchhhhccC-CCceEEEe-----------ecc-----CCCCcCcceEEEEecCCCchhHH
Q 015921          209 QGQGHINHYVFTDSDIAVVDDLGHIFHDY-QNFHLALT-----------FRN-----NKDQPLNSGFIAVRGTPDGISRA  271 (398)
Q Consensus       209 ~~~~~~~dfIFiDsDi~VvDdLg~IFk~~-PdFHvALT-----------fRn-----nkdqPiNSGfIfVRgt~d~~~kA  271 (398)
                      .   ..+.+|++|+|++|.+||.++|+.- .+..+|..           ++.     ..+..+||||+.+.=..  . +-
T Consensus        94 p---~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVmlinl~~--~-r~  167 (246)
T cd00505          94 P---DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVVNLSK--E-RR  167 (246)
T ss_pred             h---ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEEEechH--H-HH
Confidence            1   3678999999999999999999972 34555552           000     12457999999994333  2 23


Q ss_pred             HHHHHHHHHHHHHhHHhHhhhhcchhhHHHHHhcCCchhhhhcccCccccccccceEEEEeecccccCCCCCC-CCc--c
Q 015921          272 KIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEG-AGQ--F  348 (398)
Q Consensus       272 ~~FLeeV~eiY~sky~~a~~mlGDQlALa~avk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtPpeg-aGQ--f  348 (398)
                      .++++++++.|... . .+-..+||-+|+.+...+|                   ..+..|||. ||+.+... ...  +
T Consensus       168 ~~~~~~~~~~~~~~-~-~~~~~~DQd~LN~~~~~~~-------------------~~i~~L~~~-wN~~~~~~~~~~~~~  225 (246)
T cd00505         168 NQLLKVALEKWLQS-L-SSLSGGDQDLLNTFFKQVP-------------------FIVKSLPCI-WNVRLTGCYRSLNCF  225 (246)
T ss_pred             HHHHHHHHHHHHhh-c-ccCccCCcHHHHHHHhcCC-------------------CeEEECCCe-eeEEecCccccccch
Confidence            56677777766543 1 2457899999999975332                   478999986 99985311 110  0


Q ss_pred             ccCCcceeEEeeecCch
Q 015921          349 HGMPLDVKVVHFKGSRK  365 (398)
Q Consensus       349 hgmP~dvKVlHFKGsRK  365 (398)
                      .-...+.|||||-|+.|
T Consensus       226 ~~~~~~~~iiHy~g~~K  242 (246)
T cd00505         226 KAFVKNAKVIHFNGPTK  242 (246)
T ss_pred             hhhcCCCEEEEeCCCCC
Confidence            11344899999999866

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>PLN00176 galactinol synthase	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PLN02769 Probable galacturonosyltransferase	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PLN02659 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02867 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02870 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02718 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02742 Probable galacturonosyltransferase	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins	Back alignment and domain information

>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		398
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 69/454 (15%), Positives = 128/454 (28%), Gaps = 123/454 (27%)

Query: 33  FLPYLLSVLELHEKSVVEDLPRK--NRQKFDHLILGPAAGQRLPNRL-------QCQGLK 83
           F    +   +  +   V+D+P+   ++++ DH+I+   A      RL       Q + ++
Sbjct: 25  FEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGT-LRLFWTLLSKQEEMVQ 80

Query: 84  -----ALNKT-SFQASSI--------GNSISFVT----------VFTIYNTSLDVHV--- 116
                 L     F  S I          +  ++           VF  YN S        
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 117 ------DSRASNMVTVGNASYSKTE------RSMAIL-----NVF-INFIQVTMPKSDVF 158
                    A N++  G     KT        S  +       +F +N      P++ + 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 159 IL----TDPASDLSMPRKGVTIYPIHGEYSRDKL-MLQRIRSYITFLERRIREHSQGQGH 213
           +L         + +      +   +     + +L  L + + Y   L   +  + Q    
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKA 258

Query: 214 INHY------VFTDSDIAVVDDLG-----HI--------FHDYQNFHLALTFRNNKDQ-- 252
            N +      + T     V D L      HI            +   L L + + + Q  
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 253 --------PLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVK 304
                   P     IA     DG++      +    V   K         + L       
Sbjct: 319 PREVLTTNPRRLSIIAES-IRDGLAT----WDNWKHVNCDKLTTIIESSLNVL------- 366

Query: 305 SHPSFDARRFTKAQPFVEDI-IGASVLFLPCATYNWTPPEGAGQFHGMPLDVKVVHFKGS 363
             P+   + F +   F     I   +L    +   W              DV VV     
Sbjct: 367 -EPAEYRKMFDRLSVFPPSAHIPTILL----SLI-WFDVI--------KSDVMVV-VNKL 411

Query: 364 RKRLMLESWNFFSSSSDISDMLCLILMSGRTKYD 397
            K  ++E     S+ S I  +   + +    +Y 
Sbjct: 412 HKYSLVEKQPKESTIS-IPSIYLELKVKLENEYA 444

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		398
3tzt_A		276	Glycosyl transferase family 8; structural genomics	99.16
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	99.09
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	98.92
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	98.9
3ioh_A		298	Histo-blood group ABO system transferase; GTA, cis	94.26
1o7q_A		289	N-acetyllactosaminide alpha-1,3- galactosyltransfe	93.83
4ayl_A		246	BOGT-metal-independent glycosyltransferase; histo-	90.85

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Probab=99.16  E-value=1e-10  Score=107.96  Aligned_cols=196  Identities=17%  Similarity=0.202  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhhCCC--ccEEEEeCCCCCCCC---------CCCceEEEecCCccCchhHHHHHHHHHHHHHHHHHHhhcc
Q 015921          141 LNVFINFIQVTMPK--SDVFILTDPASDLSM---------PRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQ  209 (398)
Q Consensus       141 ln~Fi~sIrvsmP~--s~VVILTD~~T~~sl---------~~~~~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~  209 (398)
                      +-+-+.||...+|+  -.+.||+|.-++-..         .+-.+++++++.+.=+..-..+|+ +...|.+-.+.++- 
T Consensus        20 ~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-s~~~~~rl~~~~l~-   97 (276)
T 3tzt_A           20 MKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDRY-PKEMYYRLLAGEFL-   97 (276)
T ss_dssp             HHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC--------------CHHHHHHHTHHHHS-
T ss_pred             HHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCcccccc-CHHHHHHHHHHHHc-
Confidence            55668899999994  466789987664321         122456676664221110112232 23444444455441 


Q ss_pred             CCCccccEEEeecCeeeecCchhhhcc-CCCceEEEe--ec-------------cCCCCcCcceEEEEecCCCchhHHHH
Q 015921          210 GQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT--FR-------------NNKDQPLNSGFIAVRGTPDGISRAKI  273 (398)
Q Consensus       210 ~~~~~~dfIFiDsDi~VvDdLg~IFk~-~PdFHvALT--fR-------------nnkdqPiNSGfIfVRgt~d~~~kA~~  273 (398)
                       ++..+..|++|+|++|.+||.++|+. ..+..+|..  ..             ...+..+|||++.+  ..+.. +...
T Consensus        98 -p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~li--nl~~~-R~~~  173 (276)
T 3tzt_A           98 -PENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLI--NLKRA-REEI  173 (276)
T ss_dssp             -CTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEE--EHHHH-HHHC
T ss_pred             -ccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEE--EHHHH-Hhhh
Confidence             12467999999999999999999996 222234442  00             01236799999999  33211 2223


Q ss_pred             HHHHHHHHHHHhHHhHhhhhcchhhHHHHHhcCCchhhhhcccCccccccccceEEEEeecccccCCCCCC-------CC
Q 015921          274 FLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEG-------AG  346 (398)
Q Consensus       274 FLeeV~eiY~sky~~a~~mlGDQlALa~avk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtPpeg-------aG  346 (398)
                      +.+++++... ++- .+-.+|||-.|+.+.+                      -.+..|||..|||.+-..       ++
T Consensus       174 ~~~~~~~~~~-~~~-~~~~~~DQd~LN~~f~----------------------~~~~~Lp~~~wN~~~~~~~~~~~~~~~  229 (276)
T 3tzt_A          174 DPDEIFSFVE-DNH-MNLLLPDQDILNAMYG----------------------DRIYPLDDLIYNYDARNYSSYLIRSKK  229 (276)
T ss_dssp             CHHHHHHHHH-HC---------CHHHHHHHG----------------------GGEEEEEHHHHSEETTCHHHHHHHTTT
T ss_pred             HHHHHHHHHH-hcc-ccccCCChhHHHHHHh----------------------CCEEECCchheeeecccchhhhccccc
Confidence            4455444322 221 2335799999998752                      148999999999985211       11


Q ss_pred             cc--ccCCcceeEEeeecCchh
Q 015921          347 QF--HGMPLDVKVVHFKGSRKR  366 (398)
Q Consensus       347 Qf--hgmP~dvKVlHFKGsRKr  366 (398)
                      +.  .-.-.+.+||||-|+.|=
T Consensus       230 ~~~~~~~~~~~~iiHy~g~~KP  251 (276)
T 3tzt_A          230 QADLAWLMDHTVVLHFCGRDKP  251 (276)
T ss_dssp             CCSHHHHHHHCCEEECCSSCCT
T ss_pred             hhhhhhhccCCeEEEECCCCCC
Confidence            10  001236899999998773

PyMOL of 3tzt

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...	Back alignment and structure

>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...	Back alignment and structure

>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		398
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	98.95
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	98.81
d1lzia_		283	Glycosyltransferase A catalytic domain {Human (Hom	94.66
d1o7qa_		287	alpha-1,3-galactosyltransferase catalytic domain {	92.98

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=98.95  E-value=8.6e-10  Score=97.06  Aligned_cols=157  Identities=16%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHhhCCCc--cEEEEeCCCCCCCC---------CCCceEEEecCCc-cCchhHHHHH--HHHHHHHHHH
Q 015921          137 SMAILNVFINFIQVTMPKS--DVFILTDPASDLSM---------PRKGVTIYPIHGE-YSRDKLMLQR--IRSYITFLER  202 (398)
Q Consensus       137 s~avln~Fi~sIrvsmP~s--~VVILTD~~T~~sl---------~~~~~~v~pi~g~-YSR~~LmlQR--i~sYi~fLkT  202 (398)
                      -..-+.+.+.||...+|+.  ++.||+|.-++...         .+-.++++++..+ ....+...++  ...|.|++  
T Consensus        11 Y~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~--   88 (282)
T d1ga8a_          11 YAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLK--   88 (282)
T ss_dssp             GHHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGGGGGGG--
T ss_pred             HHHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhccccccccccCHHHHHHHH--
Confidence            3445678899999999987  46788887554321         1235666776422 1110111111  22344433  


Q ss_pred             HHHhhccCCCccccEEEeecCeeeecCchhhhcc-CCCceEEEe---ec------------cCCCCcCcceEEEEecCCC
Q 015921          203 RIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT---FR------------NNKDQPLNSGFIAVRGTPD  266 (398)
Q Consensus       203 ~i~e~~~~~~~~~dfIFiDsDi~VvDdLg~IFk~-~PdFHvALT---fR------------nnkdqPiNSGfIfVRgt~d  266 (398)
                       |.++-   ...+.+|++|+||+|.+||.++|+. ..+..+|..   +.            .+.+..+||||+.+  ..+
T Consensus        89 -l~~~l---p~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGVml~--n~~  162 (282)
T d1ga8a_          89 -LGEYI---ADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLI--NLK  162 (282)
T ss_dssp             -HHHHC---CSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEE--CHH
T ss_pred             -HhhhC---CccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceeecceeee--chh
Confidence             33331   1246899999999999999999985 455556662   11            12355689999999  332


Q ss_pred             chhHHHHHHHHHHHHHHHhHHhHhhhhcchhhHHHHHh
Q 015921          267 GISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVK  304 (398)
Q Consensus       267 ~~~kA~~FLeeV~eiY~sky~~a~~mlGDQlALa~avk  304 (398)
                      .. +...+.+++.+...+. - ..-.++||-.|+.+.+
T Consensus       163 ~~-r~~~~~~~~~~~~~~~-~-~~~~~~DQd~LN~~f~  197 (282)
T d1ga8a_         163 KW-RRHDIFKMSSEWVEQY-K-DVMQYQDQDILNGLFK  197 (282)
T ss_dssp             HH-TTSCHHHHHHHHHHHH-T-TTCSSTHHHHHHHHHT
T ss_pred             hh-hhhhHHHHHHHHHHhc-c-cCcccCchhHHHHHhc
Confidence            11 1123455555544322 1 2335799999998863

PyMOL of d1ga8a_

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure