Query 015922
Match_columns 398
No_of_seqs 227 out of 879
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 04:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015922.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015922hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekd_ f.21.2.2 (D:) Succinat 12.2 1.3E+02 0.0097 21.9 4.9 13 325-337 14-26 (113)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 11.6 1.3E+02 0.0093 18.1 3.5 21 376-398 12-32 (37)
3 d1svda2 d.58.9.1 (A:16-142) Ri 8.6 34 0.0025 26.6 -0.1 16 335-350 90-105 (127)
4 d2d69a2 d.58.9.1 (A:8-133) Rib 8.0 37 0.0027 26.4 -0.1 16 335-350 90-105 (126)
5 d1bwva2 d.58.9.1 (A:7-149) Rib 7.1 36 0.0026 27.1 -0.6 11 338-348 110-120 (144)
6 d1wdda2 d.58.9.1 (A:11-150) Ri 6.9 46 0.0034 26.2 -0.0 16 335-350 102-117 (140)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 6.4 4E+02 0.029 22.0 6.5 7 33-39 78-84 (447)
8 d1lr7a1 g.3.11.3 (A:64-88) Dom 6.3 41 0.003 18.5 -0.5 16 124-139 7-22 (26)
9 d1hx1b_ a.7.7.1 (B:) BAG-famil 5.7 84 0.0061 23.7 0.9 18 249-266 67-84 (112)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 5.5 2.8E+02 0.021 15.5 3.1 19 6-24 11-29 (32)
No 1
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=12.23 E-value=1.3e+02 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHH
Q 015922 325 FLVRELRAFAGSI 337 (398)
Q Consensus 325 ~~~R~~~a~~~~~ 337 (398)
|+.-|+.|+.-.+
T Consensus 14 W~~qRvSAv~l~~ 26 (113)
T d1nekd_ 14 FILVRATAIVLTL 26 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=11.59 E-value=1.3e+02 Score=18.07 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhHhhhcC
Q 015922 376 MFLTFYVGTKLMFQISDAKQRKQ 398 (398)
Q Consensus 376 ~~~~~~~~~q~m~e~r~~e~~~~ 398 (398)
++-.+|.| +.+..|.+.||+|
T Consensus 12 ~Fw~FFag--Li~YL~rE~~REG 32 (37)
T d1eysh2 12 AFWLFFFG--LIIYLRREDKREG 32 (37)
T ss_dssp HHHHHHHH--HHHHHHHHTTSSS
T ss_pred HHHHHHHH--HHHHHHhcccccC
Confidence 33344444 4677888888886
No 3
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]}
Probab=8.56 E-value=34 Score=26.62 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 015922 335 GSITITCLMIANLVGY 350 (398)
Q Consensus 335 ~~~~i~~l~~aNlvgf 350 (398)
.+.|++..|++|++||
T Consensus 90 sv~n~ltsI~GNvfGm 105 (127)
T d1svda2 90 SVVNVFTSLVGNVFGF 105 (127)
T ss_dssp CHHHHHHHHHSSGGGC
T ss_pred hhhHHHHHhcccccch
Confidence 4455555666665554
No 4
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.98 E-value=37 Score=26.36 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 015922 335 GSITITCLMIANLVGY 350 (398)
Q Consensus 335 ~~~~i~~l~~aNlvgf 350 (398)
...|++..+++|++|+
T Consensus 90 sv~nlltsI~GNvfG~ 105 (126)
T d2d69a2 90 SLVQLFSAVAGNVFGM 105 (126)
T ss_dssp CHHHHHHHHTTGGGGC
T ss_pred chhhHHHHhhccccch
Confidence 4455555555555544
No 5
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=7.14 E-value=36 Score=27.05 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 015922 338 TITCLMIANLV 348 (398)
Q Consensus 338 ~i~~l~~aNlv 348 (398)
|++..|++|++
T Consensus 110 nlltsI~GNVF 120 (144)
T d1bwva2 110 NLTASIIGNVF 120 (144)
T ss_dssp HHHHHHTSSGG
T ss_pred HHHHHhccccc
Confidence 33333333333
No 6
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=6.88 E-value=46 Score=26.25 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 015922 335 GSITITCLMIANLVGY 350 (398)
Q Consensus 335 ~~~~i~~l~~aNlvgf 350 (398)
.+.|++..+++|++|+
T Consensus 102 sv~nlltsIvGNvfGm 117 (140)
T d1wdda2 102 SVTNMFTSIVGNVFGF 117 (140)
T ss_dssp CHHHHHHHHHSSGGGB
T ss_pred cHHHHHHHhhccccch
Confidence 3445555555555543
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.43 E-value=4e+02 Score=22.02 Aligned_cols=7 Identities=0% Similarity=-0.078 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 015922 33 LLVKSFA 39 (398)
Q Consensus 33 ~~~~~l~ 39 (398)
..+...+
T Consensus 78 ~~G~l~D 84 (447)
T d1pw4a_ 78 IMGSVSD 84 (447)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 8
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.32 E-value=41 Score=18.46 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=11.5
Q ss_pred ccccCcchhhhhhhhc
Q 015922 124 VCKSGKLCYQIQQERN 139 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (398)
+|++|+.|...++.+|
T Consensus 7 dcgpgk~c~mnrrnkp 22 (26)
T d1lr7a1 7 DCGPGKKCRMNKKNKP 22 (26)
T ss_dssp CCCTTEEEEECTTSCE
T ss_pred ccCCCccccccccCCC
Confidence 5888888876666654
No 9
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.67 E-value=84 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.1
Q ss_pred HHHHHHcCccCCCCCCcc
Q 015922 249 RLWSLICGIEAPENMPRC 266 (398)
Q Consensus 249 ~g~A~l~Gi~~PeNf~rc 266 (398)
+.+=.+|++.+||||.+|
T Consensus 67 k~LE~LDsl~lp~~~~~~ 84 (112)
T d1hx1b_ 67 KILEEIDTLILPENFKDS 84 (112)
T ss_dssp HHHHHHTTCCCCTTCHHH
T ss_pred HHHHHhhhccCcHHHHHH
Confidence 467899999999998654
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.46 E-value=2.8e+02 Score=15.55 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 015922 6 LFISFIYLFYLHGACVIFI 24 (398)
Q Consensus 6 l~~s~~F~~~~~g~~~l~l 24 (398)
+-|+++|+.+..|.-.+++
T Consensus 11 lsfglifvgwglgalllki 29 (32)
T d2e74f1 11 LSFGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHHhhh
Done!