Query 015923
Match_columns 398
No_of_seqs 282 out of 1042
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 1.1E-47 2.3E-52 376.3 9.7 198 6-203 6-209 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 8E-35 1.7E-39 244.5 5.3 93 14-106 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 1.7E-34 3.6E-39 244.3 6.1 94 11-104 1-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 3.9E-33 8.6E-38 272.0 7.2 104 6-109 4-117 (282)
5 PF00178 Ets: Ets-domain; Int 95.6 0.0066 1.4E-07 50.3 1.8 59 16-74 5-65 (85)
6 PF03310 Cauli_DNA-bind: Cauli 93.9 0.1 2.2E-06 46.1 5.0 58 145-205 2-59 (121)
7 smart00413 ETS erythroblast tr 93.1 0.12 2.6E-06 43.3 3.8 57 17-73 6-64 (87)
8 KOG3806 Predicted transcriptio 89.4 0.52 1.1E-05 44.2 4.5 65 9-73 65-131 (177)
9 TIGR02894 DNA_bind_RsfA transc 85.8 5.7 0.00012 36.9 8.9 56 136-191 98-153 (161)
10 PF12325 TMF_TATA_bd: TATA ele 85.3 4.1 8.9E-05 36.0 7.4 58 130-187 32-92 (120)
11 COG3074 Uncharacterized protei 85.2 6.2 0.00014 32.1 7.7 42 133-174 23-64 (79)
12 PF11932 DUF3450: Protein of u 84.8 8.8 0.00019 37.1 10.3 67 132-201 53-119 (251)
13 PF04340 DUF484: Protein of un 84.5 3.5 7.5E-05 39.2 7.2 75 86-193 17-91 (225)
14 TIGR02449 conserved hypothetic 84.3 4.2 9.1E-05 32.4 6.4 23 154-176 40-62 (65)
15 TIGR03752 conj_TIGR03752 integ 84.3 6.5 0.00014 42.1 9.7 67 132-201 70-137 (472)
16 PF06005 DUF904: Protein of un 82.9 9.7 0.00021 30.7 8.1 25 133-157 23-47 (72)
17 PF02183 HALZ: Homeobox associ 82.8 5.4 0.00012 29.4 6.0 41 133-173 3-43 (45)
18 PF10168 Nup88: Nuclear pore c 80.9 6.2 0.00013 44.4 8.5 62 131-192 561-622 (717)
19 PF06005 DUF904: Protein of un 80.9 7.9 0.00017 31.3 6.9 39 134-172 10-48 (72)
20 PRK15422 septal ring assembly 80.5 14 0.00029 30.7 8.1 51 133-183 23-73 (79)
21 PF10473 CENP-F_leu_zip: Leuci 79.3 16 0.00035 33.1 9.1 58 132-189 56-113 (140)
22 KOG4460 Nuclear pore complex, 78.2 9.3 0.0002 41.8 8.3 63 132-194 585-647 (741)
23 PF11932 DUF3450: Protein of u 73.2 35 0.00076 33.0 10.3 68 132-202 46-113 (251)
24 TIGR02449 conserved hypothetic 73.0 46 0.001 26.6 9.1 55 133-187 5-59 (65)
25 KOG4005 Transcription factor X 68.7 25 0.00055 34.8 8.1 53 132-184 94-151 (292)
26 PF12329 TMF_DNA_bd: TATA elem 67.3 46 0.00099 26.8 8.1 54 133-186 17-70 (74)
27 PF04111 APG6: Autophagy prote 66.3 43 0.00094 33.9 9.6 46 132-177 47-92 (314)
28 PRK10963 hypothetical protein; 65.2 25 0.00054 33.7 7.3 75 86-193 14-88 (223)
29 PF08581 Tup_N: Tup N-terminal 62.3 71 0.0015 26.3 8.4 49 134-182 3-58 (79)
30 KOG0977 Nuclear envelope prote 62.1 49 0.0011 36.3 9.6 46 132-177 166-218 (546)
31 PF02183 HALZ: Homeobox associ 60.7 24 0.00052 26.0 4.9 33 133-165 10-42 (45)
32 PF10779 XhlA: Haemolysin XhlA 60.6 82 0.0018 24.9 9.2 56 133-188 4-59 (71)
33 PF04156 IncA: IncA protein; 58.4 80 0.0017 28.9 9.2 59 132-190 92-150 (191)
34 PF00170 bZIP_1: bZIP transcri 57.9 35 0.00075 26.2 5.7 29 133-161 31-59 (64)
35 PF10473 CENP-F_leu_zip: Leuci 57.8 93 0.002 28.3 9.2 52 132-183 70-121 (140)
36 PRK00295 hypothetical protein; 57.1 61 0.0013 25.7 7.0 32 143-174 20-51 (68)
37 PF08317 Spc7: Spc7 kinetochor 57.0 69 0.0015 32.4 9.2 48 136-183 210-257 (325)
38 PRK10803 tol-pal system protei 57.0 83 0.0018 31.0 9.5 43 146-188 58-100 (263)
39 PF01519 DUF16: Protein of unk 56.3 47 0.001 28.8 6.6 28 151-178 69-96 (102)
40 PF04880 NUDE_C: NUDE protein, 56.1 6.7 0.00014 36.6 1.6 37 133-174 19-55 (166)
41 KOG4196 bZIP transcription fac 56.0 39 0.00085 30.5 6.3 42 139-187 78-119 (135)
42 KOG4360 Uncharacterized coiled 55.8 39 0.00086 36.8 7.4 54 133-186 224-277 (596)
43 PF07407 Seadorna_VP6: Seadorn 55.6 56 0.0012 33.9 8.1 50 130-186 34-85 (420)
44 PF11414 Suppressor_APC: Adeno 55.3 50 0.0011 27.5 6.5 44 131-174 3-46 (84)
45 PRK00846 hypothetical protein; 54.8 61 0.0013 26.7 6.8 14 160-173 45-58 (77)
46 PF04201 TPD52: Tumour protein 54.2 40 0.00087 31.4 6.4 40 133-172 27-66 (162)
47 smart00787 Spc7 Spc7 kinetocho 54.0 83 0.0018 32.0 9.2 52 136-187 205-256 (312)
48 PRK00736 hypothetical protein; 53.7 67 0.0014 25.5 6.8 29 144-172 21-49 (68)
49 PRK11637 AmiB activator; Provi 53.5 81 0.0018 32.9 9.3 56 133-188 80-135 (428)
50 smart00338 BRLZ basic region l 53.3 38 0.00083 26.0 5.3 29 133-161 31-59 (65)
51 COG5481 Uncharacterized conser 52.8 89 0.0019 24.8 7.0 35 144-178 6-46 (67)
52 PF12308 Noelin-1: Neurogenesi 52.5 54 0.0012 28.3 6.3 52 132-183 44-95 (101)
53 PF04102 SlyX: SlyX; InterPro 52.3 53 0.0012 25.9 6.0 41 135-175 11-51 (69)
54 PRK04406 hypothetical protein; 51.6 68 0.0015 26.0 6.6 11 178-188 36-46 (75)
55 COG4942 Membrane-bound metallo 51.6 88 0.0019 33.4 9.1 46 132-177 63-108 (420)
56 PRK14127 cell division protein 51.5 72 0.0016 27.8 7.2 40 137-176 32-71 (109)
57 PRK11637 AmiB activator; Provi 51.5 1.2E+02 0.0025 31.7 10.1 41 136-176 76-116 (428)
58 PF08826 DMPK_coil: DMPK coile 51.2 1.1E+02 0.0023 24.1 7.4 37 144-180 13-49 (61)
59 TIGR00219 mreC rod shape-deter 51.1 47 0.001 33.1 6.8 24 136-159 67-90 (283)
60 TIGR02894 DNA_bind_RsfA transc 51.0 69 0.0015 29.9 7.3 41 132-172 108-148 (161)
61 COG1579 Zn-ribbon protein, pos 51.0 58 0.0012 32.1 7.2 47 131-177 92-138 (239)
62 PRK00888 ftsB cell division pr 51.0 53 0.0011 28.1 6.2 34 136-169 28-61 (105)
63 KOG3863 bZIP transcription fac 50.9 24 0.00053 39.0 5.1 71 88-169 479-552 (604)
64 COG3074 Uncharacterized protei 50.7 1.2E+02 0.0026 24.8 7.7 45 133-177 9-53 (79)
65 PRK10803 tol-pal system protei 50.7 58 0.0013 32.1 7.3 38 139-176 58-95 (263)
66 PRK09039 hypothetical protein; 50.6 92 0.002 31.9 9.0 44 133-176 121-164 (343)
67 PF11559 ADIP: Afadin- and alp 50.6 1.4E+02 0.003 26.5 9.2 48 133-180 57-104 (151)
68 PRK10884 SH3 domain-containing 50.2 51 0.0011 31.6 6.7 26 73-98 65-92 (206)
69 PRK13182 racA polar chromosome 50.1 1E+02 0.0022 28.9 8.4 54 128-181 78-143 (175)
70 PF06156 DUF972: Protein of un 49.8 73 0.0016 27.6 6.9 45 133-177 13-57 (107)
71 PF04420 CHD5: CHD5-like prote 49.4 83 0.0018 28.8 7.6 58 134-191 39-108 (161)
72 PF09726 Macoilin: Transmembra 48.8 70 0.0015 36.1 8.4 26 132-157 422-447 (697)
73 COG1579 Zn-ribbon protein, pos 47.7 77 0.0017 31.3 7.5 44 134-177 37-80 (239)
74 PF10224 DUF2205: Predicted co 47.5 1.6E+02 0.0035 24.4 9.0 40 136-182 9-49 (80)
75 PF04728 LPP: Lipoprotein leuc 47.5 1.3E+02 0.0029 23.4 7.2 41 133-173 8-48 (56)
76 PRK09039 hypothetical protein; 46.9 1.2E+02 0.0025 31.2 9.1 58 133-190 128-185 (343)
77 PF12325 TMF_TATA_bd: TATA ele 46.8 1.9E+02 0.0042 25.5 9.2 46 133-178 21-66 (120)
78 PF07106 TBPIP: Tat binding pr 46.3 1E+02 0.0023 27.9 7.8 59 133-191 77-137 (169)
79 PF00038 Filament: Intermediat 46.1 1.3E+02 0.0029 29.5 9.1 42 133-174 214-255 (312)
80 PF12329 TMF_DNA_bd: TATA elem 45.8 64 0.0014 26.0 5.6 45 143-187 13-57 (74)
81 PRK02119 hypothetical protein; 44.8 1E+02 0.0022 24.8 6.6 13 178-190 34-46 (73)
82 TIGR02132 phaR_Bmeg polyhydrox 44.4 1.1E+02 0.0023 29.3 7.5 56 132-187 83-138 (189)
83 PRK13169 DNA replication intia 43.8 1E+02 0.0022 27.0 6.9 43 133-175 13-55 (110)
84 PF04849 HAP1_N: HAP1 N-termin 43.8 1.8E+02 0.0039 29.8 9.6 65 138-202 230-294 (306)
85 PF11559 ADIP: Afadin- and alp 43.1 2.2E+02 0.0048 25.2 9.3 44 133-176 64-107 (151)
86 PF12709 Kinetocho_Slk19: Cent 42.8 92 0.002 26.3 6.2 26 134-159 48-73 (87)
87 COG3883 Uncharacterized protei 42.5 1.6E+02 0.0034 29.6 8.9 64 132-195 49-115 (265)
88 PRK06800 fliH flagellar assemb 42.1 2.1E+02 0.0047 27.6 9.2 34 133-166 36-69 (228)
89 KOG4010 Coiled-coil protein TP 41.7 80 0.0017 30.3 6.3 39 134-172 43-81 (208)
90 PF07106 TBPIP: Tat binding pr 41.1 93 0.002 28.2 6.6 52 132-183 83-136 (169)
91 PF12718 Tropomyosin_1: Tropom 40.9 1.3E+02 0.0028 27.2 7.4 44 133-176 19-62 (143)
92 PF04156 IncA: IncA protein; 40.9 2.4E+02 0.0051 25.8 9.4 44 133-176 107-150 (191)
93 COG3159 Uncharacterized protei 40.3 48 0.001 32.3 4.8 76 83-191 12-87 (218)
94 PF04977 DivIC: Septum formati 40.2 88 0.0019 24.2 5.6 11 191-201 52-62 (80)
95 PF10226 DUF2216: Uncharacteri 39.5 1.6E+02 0.0034 28.3 7.9 23 134-156 54-76 (195)
96 PF10211 Ax_dynein_light: Axon 38.2 1.3E+02 0.0028 28.3 7.2 28 132-159 124-151 (189)
97 PRK10884 SH3 domain-containing 38.1 1.3E+02 0.0029 28.8 7.4 9 194-202 184-192 (206)
98 PF07200 Mod_r: Modifier of ru 38.0 2E+02 0.0043 25.4 8.1 36 147-182 53-88 (150)
99 PF10805 DUF2730: Protein of u 37.9 2E+02 0.0043 24.6 7.7 39 141-179 48-88 (106)
100 PF01519 DUF16: Protein of unk 37.5 2.7E+02 0.0059 24.2 8.4 40 137-176 62-101 (102)
101 PF08826 DMPK_coil: DMPK coile 37.4 2E+02 0.0044 22.6 7.0 45 131-175 14-58 (61)
102 PF11853 DUF3373: Protein of u 37.3 31 0.00067 37.3 3.3 37 133-177 23-59 (489)
103 KOG4196 bZIP transcription fac 37.0 1.6E+02 0.0035 26.7 7.2 24 149-172 47-70 (135)
104 PF14282 FlxA: FlxA-like prote 37.0 2.2E+02 0.0047 24.3 7.9 24 133-156 17-40 (106)
105 PF07716 bZIP_2: Basic region 36.5 67 0.0015 23.9 4.1 22 133-154 30-51 (54)
106 PRK14127 cell division protein 36.5 1.1E+02 0.0023 26.8 5.9 31 135-165 37-67 (109)
107 PF08781 DP: Transcription fac 36.3 1.7E+02 0.0037 26.8 7.4 27 136-162 2-28 (142)
108 PRK13729 conjugal transfer pil 36.0 1.9E+02 0.0041 31.4 8.8 43 143-185 77-119 (475)
109 PF12709 Kinetocho_Slk19: Cent 35.4 2.7E+02 0.006 23.5 8.4 52 135-186 34-86 (87)
110 PRK15422 septal ring assembly 35.2 2.6E+02 0.0057 23.2 9.3 35 133-167 9-43 (79)
111 PF03904 DUF334: Domain of unk 34.8 2.6E+02 0.0056 27.6 8.8 41 134-174 42-82 (230)
112 PF05377 FlaC_arch: Flagella a 34.7 1.7E+02 0.0037 22.7 6.1 14 133-146 5-18 (55)
113 PRK13729 conjugal transfer pil 34.5 1.3E+02 0.0029 32.5 7.4 44 136-179 77-120 (475)
114 PF07200 Mod_r: Modifier of ru 34.1 3.3E+02 0.0071 24.0 10.2 66 135-200 34-101 (150)
115 PF02403 Seryl_tRNA_N: Seryl-t 33.8 2.7E+02 0.0057 23.2 7.8 51 132-182 40-93 (108)
116 PRK13922 rod shape-determining 33.6 1.2E+02 0.0027 29.4 6.6 23 136-158 70-92 (276)
117 PF00170 bZIP_1: bZIP transcri 33.1 2.2E+02 0.0048 21.7 6.9 22 137-158 28-49 (64)
118 PF11853 DUF3373: Protein of u 33.0 41 0.00088 36.4 3.4 30 133-162 29-58 (489)
119 PRK13923 putative spore coat p 33.0 3.5E+02 0.0076 25.5 9.1 41 148-188 110-150 (170)
120 TIGR03752 conj_TIGR03752 integ 32.9 2.7E+02 0.0058 30.3 9.3 41 132-172 63-103 (472)
121 PF08317 Spc7: Spc7 kinetochor 32.8 2.9E+02 0.0062 28.0 9.2 23 134-156 176-198 (325)
122 COG1382 GimC Prefoldin, chaper 32.6 1.9E+02 0.0042 25.7 6.9 40 134-173 69-108 (119)
123 PF10805 DUF2730: Protein of u 32.6 2.4E+02 0.0052 24.0 7.4 32 148-179 64-95 (106)
124 PF10018 Med4: Vitamin-D-recep 32.5 4.1E+02 0.009 24.7 10.2 59 140-202 7-65 (188)
125 PRK03947 prefoldin subunit alp 32.4 2.2E+02 0.0047 24.9 7.4 47 132-178 91-137 (140)
126 PHA02562 46 endonuclease subun 31.7 2.6E+02 0.0057 29.6 9.2 14 183-196 405-418 (562)
127 PF13874 Nup54: Nucleoporin co 31.5 3.1E+02 0.0067 24.4 8.3 47 135-181 44-90 (141)
128 PF13747 DUF4164: Domain of un 31.5 3E+02 0.0065 22.9 7.6 40 133-172 37-76 (89)
129 PF12269 zf-CpG_bind_C: CpG bi 31.4 1.1E+02 0.0024 30.2 5.8 32 160-191 33-64 (236)
130 PF07676 PD40: WD40-like Beta 31.3 34 0.00075 23.0 1.7 23 22-44 4-26 (39)
131 PF05377 FlaC_arch: Flagella a 31.3 2.3E+02 0.005 22.0 6.3 25 161-185 19-43 (55)
132 PF03961 DUF342: Protein of un 31.2 2.6E+02 0.0056 29.5 8.9 26 133-158 332-357 (451)
133 cd00632 Prefoldin_beta Prefold 31.2 2.3E+02 0.0051 23.7 7.1 44 132-175 60-103 (105)
134 PF02994 Transposase_22: L1 tr 31.1 72 0.0016 33.0 4.7 54 133-186 110-167 (370)
135 PF13094 CENP-Q: CENP-Q, a CEN 30.9 3E+02 0.0066 24.7 8.2 44 148-191 40-83 (160)
136 PF07889 DUF1664: Protein of u 30.8 2.6E+02 0.0056 25.0 7.5 53 133-188 41-93 (126)
137 PF13942 Lipoprotein_20: YfhG 30.7 2.4E+02 0.0053 26.7 7.6 35 139-173 120-154 (179)
138 COG1730 GIM5 Predicted prefold 30.6 1.7E+02 0.0037 26.8 6.5 42 133-174 92-133 (145)
139 PF08946 Osmo_CC: Osmosensory 30.0 1E+02 0.0022 23.2 4.0 30 154-183 10-39 (46)
140 PRK14160 heat shock protein Gr 29.8 4.3E+02 0.0093 25.6 9.4 41 133-173 59-99 (211)
141 PF07407 Seadorna_VP6: Seadorn 29.7 1.3E+02 0.0028 31.4 6.1 49 127-175 38-88 (420)
142 KOG2196 Nuclear porin [Nuclear 29.7 2.2E+02 0.0048 28.4 7.4 43 132-174 117-159 (254)
143 PF04325 DUF465: Protein of un 29.7 90 0.0019 22.9 3.8 25 133-157 25-49 (49)
144 TIGR00414 serS seryl-tRNA synt 29.7 2.7E+02 0.0058 29.4 8.7 71 131-201 40-115 (418)
145 PF10018 Med4: Vitamin-D-recep 29.6 3E+02 0.0066 25.6 8.2 50 133-183 14-63 (188)
146 smart00338 BRLZ basic region l 29.6 2.5E+02 0.0053 21.4 6.4 32 137-168 28-59 (65)
147 PF04012 PspA_IM30: PspA/IM30 29.5 4E+02 0.0087 24.9 9.1 41 143-183 99-139 (221)
148 PRK14143 heat shock protein Gr 29.1 4.2E+02 0.0092 26.1 9.4 42 133-174 65-106 (238)
149 PRK10722 hypothetical protein; 29.0 2.1E+02 0.0046 28.5 7.2 28 148-175 175-202 (247)
150 PF12718 Tropomyosin_1: Tropom 28.7 4.3E+02 0.0094 23.7 9.1 33 133-165 33-65 (143)
151 PF09727 CortBP2: Cortactin-bi 28.6 3.2E+02 0.007 26.2 8.2 49 140-188 139-187 (192)
152 PRK15396 murein lipoprotein; P 28.3 3E+02 0.0066 22.7 7.0 47 136-182 26-72 (78)
153 PF04111 APG6: Autophagy prote 28.2 4.4E+02 0.0095 26.8 9.6 30 133-162 62-91 (314)
154 PF10779 XhlA: Haemolysin XhlA 28.1 3E+02 0.0065 21.7 8.0 54 146-199 3-56 (71)
155 PF04102 SlyX: SlyX; InterPro 27.9 3E+02 0.0066 21.6 7.2 14 178-191 29-42 (69)
156 PF06785 UPF0242: Uncharacteri 27.8 2.8E+02 0.0061 29.0 8.1 50 132-181 131-180 (401)
157 PRK15396 murein lipoprotein; P 27.8 3.5E+02 0.0075 22.3 8.1 45 132-176 29-73 (78)
158 PRK14148 heat shock protein Gr 27.5 5.3E+02 0.012 24.6 9.5 43 132-174 37-79 (195)
159 PF14817 HAUS5: HAUS augmin-li 27.3 4.2E+02 0.009 29.8 10.0 49 132-180 83-131 (632)
160 KOG2751 Beclin-like protein [S 27.3 4.5E+02 0.0097 28.4 9.6 67 133-199 181-251 (447)
161 PF14817 HAUS5: HAUS augmin-li 27.3 3.4E+02 0.0074 30.5 9.3 54 143-196 80-133 (632)
162 PF08614 ATG16: Autophagy prot 27.3 5.1E+02 0.011 24.1 9.6 24 135-158 116-139 (194)
163 PF10146 zf-C4H2: Zinc finger- 27.2 4.1E+02 0.0089 26.0 8.9 63 137-202 34-96 (230)
164 PRK05431 seryl-tRNA synthetase 27.0 2.7E+02 0.0058 29.4 8.2 71 131-201 38-112 (425)
165 COG4026 Uncharacterized protei 26.9 4.2E+02 0.0092 26.4 8.8 56 133-188 133-188 (290)
166 PF13851 GAS: Growth-arrest sp 26.7 5.6E+02 0.012 24.3 10.3 10 178-187 162-171 (201)
167 PF06785 UPF0242: Uncharacteri 26.2 2.7E+02 0.0058 29.2 7.6 40 136-175 100-139 (401)
168 PF02388 FemAB: FemAB family; 26.2 4.5E+02 0.0097 27.4 9.6 58 131-188 238-298 (406)
169 PF10146 zf-C4H2: Zinc finger- 26.0 6.3E+02 0.014 24.7 10.4 67 132-201 36-102 (230)
170 KOG1853 LIS1-interacting prote 25.9 5.4E+02 0.012 26.1 9.4 24 136-159 60-83 (333)
171 PRK13923 putative spore coat p 25.6 2.9E+02 0.0063 26.0 7.2 41 133-173 109-149 (170)
172 KOG0996 Structural maintenance 25.5 2.3E+02 0.005 34.1 7.8 44 133-176 547-590 (1293)
173 PF09787 Golgin_A5: Golgin sub 25.5 2.6E+02 0.0057 30.1 7.9 40 135-174 274-313 (511)
174 PF05064 Nsp1_C: Nsp1-like C-t 25.4 35 0.00075 29.6 1.1 21 143-163 58-78 (116)
175 PRK03947 prefoldin subunit alp 25.4 3.1E+02 0.0068 23.9 7.1 27 135-161 6-32 (140)
176 PF10393 Matrilin_ccoil: Trime 25.0 1.8E+02 0.0039 21.8 4.6 18 162-179 29-46 (47)
177 PF07798 DUF1640: Protein of u 24.9 3.8E+02 0.0083 24.6 7.9 14 65-78 6-19 (177)
178 PF04012 PspA_IM30: PspA/IM30 24.8 3.5E+02 0.0076 25.3 7.8 43 133-175 96-138 (221)
179 PF09726 Macoilin: Transmembra 24.8 1.9E+02 0.0042 32.7 6.9 34 134-167 417-450 (697)
180 KOG1103 Predicted coiled-coil 24.8 2.4E+02 0.0053 29.7 7.1 49 133-181 243-291 (561)
181 PF10224 DUF2205: Predicted co 24.7 3.8E+02 0.0083 22.2 7.0 43 132-174 20-62 (80)
182 PF14584 DUF4446: Protein of u 24.6 1.6E+02 0.0034 27.0 5.2 57 135-191 23-81 (151)
183 PF11382 DUF3186: Protein of u 24.5 1.9E+02 0.004 29.2 6.2 40 132-171 36-75 (308)
184 COG1730 GIM5 Predicted prefold 24.4 4.5E+02 0.0097 24.1 8.0 43 132-174 98-140 (145)
185 KOG2391 Vacuolar sorting prote 24.2 4.4E+02 0.0095 27.7 8.7 43 140-186 223-265 (365)
186 PF02403 Seryl_tRNA_N: Seryl-t 24.2 2E+02 0.0043 24.0 5.4 27 139-165 33-59 (108)
187 PRK10698 phage shock protein P 24.2 3.6E+02 0.0079 25.9 7.9 38 146-183 103-140 (222)
188 PRK14158 heat shock protein Gr 24.0 6.4E+02 0.014 24.1 9.4 42 133-174 38-79 (194)
189 KOG4673 Transcription factor T 23.9 2.5E+02 0.0055 32.1 7.4 45 139-183 577-632 (961)
190 COG2433 Uncharacterized conser 23.9 4.6E+02 0.0099 29.6 9.3 42 132-173 426-467 (652)
191 PRK07737 fliD flagellar cappin 23.8 3E+02 0.0066 29.7 8.0 22 157-178 449-470 (501)
192 PF13851 GAS: Growth-arrest sp 23.6 5.6E+02 0.012 24.3 8.9 14 189-202 137-150 (201)
193 PRK13182 racA polar chromosome 23.5 3E+02 0.0064 25.8 6.9 24 153-176 122-145 (175)
194 KOG4057 Uncharacterized conser 23.4 5.9E+02 0.013 23.8 8.5 58 133-190 17-74 (180)
195 PF14282 FlxA: FlxA-like prote 23.4 4.5E+02 0.0098 22.4 7.5 44 132-175 23-70 (106)
196 cd00890 Prefoldin Prefoldin is 23.2 3.6E+02 0.0078 22.6 7.0 43 132-174 84-126 (129)
197 TIGR02977 phageshock_pspA phag 22.9 6.3E+02 0.014 24.0 9.2 40 144-183 101-140 (219)
198 COG2433 Uncharacterized conser 22.8 2.7E+02 0.0058 31.3 7.3 17 10-26 298-314 (652)
199 PRK06342 transcription elongat 22.8 1.7E+02 0.0036 27.0 5.0 21 136-156 35-55 (160)
200 TIGR01843 type_I_hlyD type I s 22.7 4.7E+02 0.01 26.3 8.8 7 235-241 277-283 (423)
201 PLN02320 seryl-tRNA synthetase 22.6 3.6E+02 0.0078 29.5 8.2 70 132-201 104-176 (502)
202 PF01093 Clusterin: Clusterin; 22.6 4.1E+02 0.009 28.5 8.5 54 133-186 28-81 (436)
203 PF08606 Prp19: Prp19/Pso4-lik 22.6 4.3E+02 0.0093 21.5 7.8 35 133-167 6-40 (70)
204 PF15456 Uds1: Up-regulated Du 22.6 3.2E+02 0.0069 24.3 6.6 34 134-168 21-54 (124)
205 TIGR02338 gimC_beta prefoldin, 22.5 4E+02 0.0086 22.6 7.0 41 134-174 66-106 (110)
206 KOG0977 Nuclear envelope prote 22.5 4.2E+02 0.0092 29.3 8.7 41 132-172 152-192 (546)
207 PRK00888 ftsB cell division pr 22.5 2.7E+02 0.0058 23.8 5.9 9 193-201 64-72 (105)
208 PF01025 GrpE: GrpE; InterPro 22.5 1.6E+02 0.0035 26.2 4.9 26 147-172 23-48 (165)
209 PF05278 PEARLI-4: Arabidopsis 22.5 6.1E+02 0.013 25.6 9.2 57 133-189 198-254 (269)
210 KOG4497 Uncharacterized conser 22.2 84 0.0018 32.9 3.2 75 15-94 163-257 (447)
211 KOG0804 Cytoplasmic Zn-finger 22.2 3.7E+02 0.008 29.2 8.0 47 136-189 348-394 (493)
212 PF06216 RTBV_P46: Rice tungro 22.2 2.4E+02 0.0052 28.5 6.2 47 131-177 67-113 (389)
213 PF13815 Dzip-like_N: Iguana/D 22.2 2.9E+02 0.0063 23.8 6.2 40 133-172 78-117 (118)
214 PF08614 ATG16: Autophagy prot 22.1 5.4E+02 0.012 23.9 8.4 19 164-182 159-177 (194)
215 TIGR03495 phage_LysB phage lys 21.9 6E+02 0.013 23.0 8.9 56 134-189 18-73 (135)
216 PRK14163 heat shock protein Gr 21.8 5.8E+02 0.013 24.8 8.7 41 134-174 39-79 (214)
217 PF04977 DivIC: Septum formati 21.8 3.7E+02 0.0081 20.6 6.8 32 137-168 19-50 (80)
218 PHA01750 hypothetical protein 21.7 2.8E+02 0.006 22.5 5.4 15 147-161 40-54 (75)
219 PF08172 CASP_C: CASP C termin 21.5 4.3E+02 0.0093 26.1 7.9 38 133-170 84-121 (248)
220 COG4942 Membrane-bound metallo 21.5 7.6E+02 0.016 26.5 10.1 43 135-177 38-80 (420)
221 PF05524 PEP-utilisers_N: PEP- 21.5 2.1E+02 0.0046 24.2 5.2 53 150-202 36-89 (123)
222 PF00038 Filament: Intermediat 21.4 7.4E+02 0.016 24.2 9.7 23 148-170 215-237 (312)
223 PF08227 DASH_Hsk3: DASH compl 21.4 3.5E+02 0.0076 20.1 6.2 40 143-190 3-42 (45)
224 PF04728 LPP: Lipoprotein leuc 21.2 4E+02 0.0088 20.8 8.6 49 135-183 3-51 (56)
225 PRK14162 heat shock protein Gr 21.1 7E+02 0.015 23.8 9.0 42 133-174 37-78 (194)
226 PRK09973 putative outer membra 21.0 4.6E+02 0.0099 22.1 6.8 44 133-176 29-72 (85)
227 PLN03223 Polycystin cation cha 20.9 3.1E+02 0.0067 33.8 7.7 54 137-190 1573-1626(1634)
228 COG5613 Uncharacterized conser 20.9 6.1E+02 0.013 26.8 9.0 72 140-214 328-399 (400)
229 PF04888 SseC: Secretion syste 20.9 7.5E+02 0.016 24.4 9.6 64 134-197 236-299 (306)
230 PF01920 Prefoldin_2: Prefoldi 20.8 4.5E+02 0.0098 21.2 6.9 41 133-173 60-100 (106)
231 PLN02678 seryl-tRNA synthetase 20.8 4.2E+02 0.0091 28.4 8.2 70 131-200 43-116 (448)
232 PHA01750 hypothetical protein 20.7 3.3E+02 0.0071 22.1 5.6 32 141-172 41-72 (75)
233 PRK08032 fliD flagellar cappin 20.7 4.5E+02 0.0098 28.0 8.5 26 153-178 410-435 (462)
234 COG4026 Uncharacterized protei 20.7 6E+02 0.013 25.3 8.5 51 132-182 139-189 (290)
235 PF10186 Atg14: UV radiation r 20.6 6E+02 0.013 24.2 8.7 15 140-154 68-82 (302)
236 PF13874 Nup54: Nucleoporin co 20.4 5.2E+02 0.011 23.0 7.6 37 154-190 56-92 (141)
237 KOG3119 Basic region leucine z 20.2 5.6E+02 0.012 25.4 8.5 57 133-189 192-248 (269)
238 PF10883 DUF2681: Protein of u 20.2 4.7E+02 0.01 22.0 6.7 35 135-169 23-57 (87)
239 PF10267 Tmemb_cc2: Predicted 20.1 5.3E+02 0.012 27.4 8.6 52 132-186 216-267 (395)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=1.1e-47 Score=376.31 Aligned_cols=198 Identities=50% Similarity=0.813 Sum_probs=177.7
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc--CCce
Q 015923 6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDRY 83 (398)
Q Consensus 6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~ 83 (398)
......+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+ +++|
T Consensus 6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w 85 (304)
T KOG0627|consen 6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW 85 (304)
T ss_pred ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eEecCCcccccccccccceecCCCCccCCC--Cccc--ccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 84 EFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKL--QNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQ 159 (398)
Q Consensus 84 eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~q--q~~~--~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq 159 (398)
||+|++|+||+++||++|+|||+.+..... +... .......+.+..+..++.++.+|+++++.|++|+++||+++.
T Consensus 86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~ 165 (304)
T KOG0627|consen 86 EFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQD 165 (304)
T ss_pred eecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999998775421 1111 111122345566778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhc
Q 015923 160 ATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQ 203 (398)
Q Consensus 160 ~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~~ 203 (398)
.++++++.+.++|..++.+|++++.++++.++.|+|+.++.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 166 ALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 99999999999999999999999999999999999999998763
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=8e-35 Score=244.51 Aligned_cols=93 Identities=58% Similarity=1.035 Sum_probs=81.6
Q ss_pred cHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCcccccCC---------cee
Q 015923 14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD---------RYE 84 (398)
Q Consensus 14 ~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---------~~e 84 (398)
.||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+..+ .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred EecCCcccccccccccceecCC
Q 015923 85 FANEGFLRGQKHLLKSISRRKP 106 (398)
Q Consensus 85 F~h~~F~Rg~~~LL~~IkRrk~ 106 (398)
|+|++|+||++++|..|+||++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.7e-34 Score=244.31 Aligned_cols=94 Identities=64% Similarity=1.204 Sum_probs=90.8
Q ss_pred CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCcccccC----------
Q 015923 11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP---------- 80 (398)
Q Consensus 11 ~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~---------- 80 (398)
.+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CceeEecCCcccccccccccceec
Q 015923 81 -DRYEFANEGFLRGQKHLLKSISRR 104 (398)
Q Consensus 81 -d~~eF~h~~F~Rg~~~LL~~IkRr 104 (398)
+.|+|+|++|+||+++||..|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999986
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=3.9e-33 Score=271.98 Aligned_cols=104 Identities=40% Similarity=0.791 Sum_probs=95.6
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc-C----
Q 015923 6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-P---- 80 (398)
Q Consensus 6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-~---- 80 (398)
++....++.|+.|||.||+||++.++|+|+++|++|||+|+..|.+.|||+||||+||+|||||||+||||||. .
T Consensus 4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~ 83 (282)
T COG5169 4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR 83 (282)
T ss_pred CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred -----CceeEecCCcccccccccccceecCCCCc
Q 015923 81 -----DRYEFANEGFLRGQKHLLKSISRRKPAQV 109 (398)
Q Consensus 81 -----d~~eF~h~~F~Rg~~~LL~~IkRrk~~~~ 109 (398)
+.|||.|++|++|..++|++|+|+|....
T Consensus 84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~ 117 (282)
T COG5169 84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSN 117 (282)
T ss_pred cccchhheeecCchhccCcHHHHHHhhhhhcCcc
Confidence 24999999999999999999999765543
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.58 E-value=0.0066 Score=50.33 Aligned_cols=59 Identities=24% Similarity=0.420 Sum_probs=46.2
Q ss_pred HHHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhc-ccccCCCChhhHhhhhcccC
Q 015923 16 LSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYG 74 (398)
Q Consensus 16 l~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~yFkh~nfsSFvRQLN~YG 74 (398)
..=|.++|.|++..++|+|.. .+.-|.|.|+.++++.-- -+--..-+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 345788999999999999999 999999999999987421 12233457999999998763
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=93.93 E-value=0.1 Score=46.12 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhccc
Q 015923 145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQND 205 (398)
Q Consensus 145 ~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~~~~ 205 (398)
+..+.||..+++.+..+...+..|.++++..++.+++|.++-||++++ |...+.+-+.
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC 59 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCEC 59 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchh
Confidence 345788999999999999999999999999999999999999999995 8887766443
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.06 E-value=0.12 Score=43.28 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=43.8
Q ss_pred HHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923 17 SKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY 73 (398)
Q Consensus 17 ~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y 73 (398)
.=|.++|.||++.++|+|.+ ++.-|.+.|+.+.++.-=- +-=+.-||..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 34788999999999999999 6889999999888774211 111234788888888776
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=89.38 E-value=0.52 Score=44.21 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=46.9
Q ss_pred CCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcccc-cCCCChhhHhhhhccc
Q 015923 9 GNSLPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLPKY-FKHSNFSSFVRQLNTY 73 (398)
Q Consensus 9 ~~~~~~Fl~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP~y-Fkh~nfsSFvRQLN~Y 73 (398)
.++.-....=|-++|+|++..++|+|.. +|--|.+.||++-++.-=-+= =.+=||.-.-|-|..|
T Consensus 65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3444555666778899999999999999 688999999999988532221 1233666666766665
No 9
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.77 E-value=5.7 Score=36.90 Aligned_cols=56 Identities=16% Similarity=0.370 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
....++.++..|..|+..|+++...++.++..|.+++..++..-+.|+..+-++-+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999999999999999999999999999999988876644
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.26 E-value=4.1 Score=35.97 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=42.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 130 KYGLEEEVEILKRDKNVLMQELVRLRQQQ---QATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 130 ~~~Le~Eve~LKrD~~~L~qEL~~LRQqq---q~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
...+..++.+|...+..|.+||++|..+. .....++..|...+..++.|.+.++.+|.
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777888888888888888887766 34446677777888888888888777663
No 11
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.24 E-value=6.2 Score=32.07 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
|.-||+.||..++.|.+|+..+++....++.+-+.+.+.-.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999888877776666655555544433
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.77 E-value=8.8 Score=37.15 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQ 201 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq 201 (398)
.+..+++.|+++.+.|.....++..+....+.++..|.+++..++...+.+..+|.+.+. -|.++|.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~ 119 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 344555555555555555555555555556666666666666666777777777766665 5666665
No 13
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=84.47 E-value=3.5 Score=39.23 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=35.0
Q ss_pred ecCCcccccccccccceecCCCCccCCCCcccccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 86 ~h~~F~Rg~~~LL~~IkRrk~~~~~~~qq~~~~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
.||.|...+++||..|+=..+.. ..+ ......+..||++.+.++.++
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~~---------------~av------------------SL~erQ~~~LR~~~~~L~~~l 63 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPSG---------------GAV------------------SLVERQLERLRERNRQLEEQL 63 (225)
T ss_dssp ---------------------------------------HH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCCC---------------Ccc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999985321100 011 122334557777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 015923 166 HTVGQRVQVMEQRQQQMMSFLAKAMHSP 193 (398)
Q Consensus 166 q~L~~RLq~mE~rQqqmmsfLak~~q~P 193 (398)
..|.+.-+.-|+.++++..+..+++...
T Consensus 64 ~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 64 EELIENARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888877754
No 14
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.30 E-value=4.2 Score=32.40 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015923 154 LRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 154 LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
|.++.......+..|..||..||
T Consensus 40 L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 40 LLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 33344444444555555555544
No 15
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.30 E-value=6.5 Score=42.11 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV-QVMEQRQQQMMSFLAKAMHSPSFLSQLVQ 201 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL-q~mE~rQqqmmsfLak~~q~P~fl~qlvq 201 (398)
.+..++..|.++|+.|..|..+||++...++.+++.-.+.. +.+++.++++-+-++++.. .|.+|..
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~---~l~~l~~ 137 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG---LIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 57888899999999999999999999999998887655443 3455556665555444332 4444443
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.94 E-value=9.7 Score=30.74 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQ 157 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQq 157 (398)
|..+++.||.++..|..|...|+++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445555555533333333333333
No 17
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.84 E-value=5.4 Score=29.42 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
++.+.+.||+....|..+-.+|.++.+.+..++..+..+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55667777777777777777777777777777777766554
No 18
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.94 E-value=6.2 Score=44.36 Aligned_cols=62 Identities=16% Similarity=0.375 Sum_probs=54.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHS 192 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~ 192 (398)
..+...+..|+.+++....||..++++...+...-..|.+|++..+.+|+.++.=+.++++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778899999999999999999999999999999999999999999999877777763
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.86 E-value=7.9 Score=31.25 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
+..|..+=.....|..|+..|+++...+..+-..|.+..
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444333444444444444444333333333333333
No 20
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.48 E-value=14 Score=30.66 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
|.-||+.||.++..|.+|+..++.....+..+.+.|.+....-..|-..|+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888777655555555555555554444444444443
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.30 E-value=16 Score=33.14 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~ 189 (398)
.|..+++.+-.+.+.|..||..++.....+...++.+..|+..+|..+.-+...|..+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3667777777777778888888888888888888888888888888777766666443
No 22
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.23 E-value=9.3 Score=41.81 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPS 194 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~ 194 (398)
.+..-+..|++.+..-.|+|..++|+...++..-..|.+|.+....+|.-+|..+.++++.++
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 344556678888888899999999999999988899999999999999999999999999764
No 23
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.20 E-value=35 Score=33.01 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~ 202 (398)
.+.++-..|..+...|..|+..|+.+...++.++.+..+++..++++..++-.....+.- ++.+++..
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~ 113 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 355666667777777777777777777777777777777777777777776655554443 55555543
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.00 E-value=46 Score=26.56 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
|+..|+.|=.-.+.|..|-..||+++.....+=..|.+++...-.|-..|++-|.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666666666666666666666666666666777777777777777776663
No 25
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=68.72 E-value=25 Score=34.83 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ-----VMEQRQQQMMS 184 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq-----~mE~rQqqmms 184 (398)
.|+.+|..|-.+++.|..|-..||.+...+-.+-+.+..+|. -||-+|++++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 477888889999999999999998888777777777766665 23345555543
No 26
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.28 E-value=46 Score=26.83 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
|-+|-+.|.+....+..-|.+||.+....+.++..+..++...+..-..+-..|
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666677777777777777777777777777776666655544
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.30 E-value=43 Score=33.91 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
.+..+++.|+.+...|.+||..|.++...++.++..+......+++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999888888888888877766654
No 28
>PRK10963 hypothetical protein; Provisional
Probab=65.21 E-value=25 Score=33.71 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=42.2
Q ss_pred ecCCcccccccccccceecCCCCccCCCCcccccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 86 ~h~~F~Rg~~~LL~~IkRrk~~~~~~~qq~~~~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
.||.|.-.+++||..|+=--+..+ ....+ +- .+.+||++.+.++.++
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~~g------------aVSL~-------Er--------------Q~~~LR~r~~~Le~~l 60 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPVRG------------TVSLV-------EW--------------QMARQRNHIHVLEEEM 60 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCCCC------------eecHH-------HH--------------HHHHHHHHHHHHHHHH
Confidence 699999999999997743211100 11111 22 2345555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 015923 166 HTVGQRVQVMEQRQQQMMSFLAKAMHSP 193 (398)
Q Consensus 166 q~L~~RLq~mE~rQqqmmsfLak~~q~P 193 (398)
..|.+.-+.-|.-.+++.....+++...
T Consensus 61 ~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~ 88 (223)
T PRK10963 61 TLLMEQAIANEDLFYRLLPLQSRLAAAD 88 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6666655555555555555555555543
No 29
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.25 E-value=71 Score=26.29 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLH-------TVGQRVQVMEQRQQQM 182 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq-------~L~~RLq~mE~rQqqm 182 (398)
.+=++.+|.+...+.+|+...+.+....++++. .+.+.|-.||..+.+|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888877776665543 4455555556555554
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.11 E-value=49 Score=36.32 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQ-------QATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqq-------q~~e~qLq~L~~RLq~mE~ 177 (398)
.+++++..||+++..|..+|.++|.+. ...++++++|.++|..+.+
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 478888888888888888888888742 3456788888888888874
No 31
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.68 E-value=24 Score=26.02 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
|....+.|+.++..|.+|...|+.+...+...+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666666666655555444
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.65 E-value=82 Score=24.87 Aligned_cols=56 Identities=5% Similarity=0.259 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
+.+++.+++.+.+.+...+..+.+.....+.++.++..+|..++..++=+..++.-
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888888888899999999888887776655533
No 33
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.41 E-value=80 Score=28.87 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
.+..+++.+.+....+..++..++.........++...+|++..+...+.+..-+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888777777888888888888887777776666655
No 34
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.91 E-value=35 Score=26.19 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQAT 161 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~ 161 (398)
|+..+..|..++..|..++..|+++...+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444433
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.83 E-value=93 Score=28.28 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
.+..++..++.++..|.+++...+.+...++....++...|+..|+..-+|.
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666555555555555555555555544443
No 36
>PRK00295 hypothetical protein; Provisional
Probab=57.09 E-value=61 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
-.+.|-..|.+..++...++.++..|.+||..
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 37
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.03 E-value=69 Score=32.39 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
+++.+|.+...+..+|...|++...++.++..+.+.+...+.+.+.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445554444444555555555555544444444433
No 38
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.98 E-value=83 Score=30.99 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 146 VLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 146 ~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
.|.+.|..|+++...+..+++.+...|+.+.+||+.+.--|-+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666666666777776655544
No 39
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=56.33 E-value=47 Score=28.81 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 151 LVRLRQQQQATDRQLHTVGQRVQVMEQR 178 (398)
Q Consensus 151 L~~LRQqqq~~e~qLq~L~~RLq~mE~r 178 (398)
|..|..++...-..|+.+.++|+.|..|
T Consensus 69 Ikel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 69 IKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444443
No 40
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.12 E-value=6.7 Score=36.58 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
|+.|| .|++.|..|++|||.+...+..++ .+.+|+..
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 55666 456677777777777766666666 55555543
No 41
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.03 E-value=39 Score=30.53 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 139 ILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 139 ~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
.|..++..|++||.+|+++. ..|..++...+.+++++..|-.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~-------s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEEN-------SRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhh
Confidence 45566677777777666654 4555666777778888777753
No 42
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.78 E-value=39 Score=36.81 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
...++.++..++..|+.+|+.++++...+.++...|.+.|+.+.++|.+|-.=+
T Consensus 224 kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 224 KTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345566677788899999999999999999999999999999998888875433
No 43
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=55.59 E-value=56 Score=33.94 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=28.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 015923 130 KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH--TVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 130 ~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq--~L~~RLq~mE~rQqqmmsfL 186 (398)
.++|..|.++||+|++.|..||.+| +..+. ++.+|++-++..-..+...+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerL-------E~e~l~s~V~E~vet~dv~~d~i~Kim 85 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERL-------ENEMLRSHVCEDVETNDVIYDKIVKIM 85 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777666 33333 35556655554444443333
No 44
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=55.31 E-value=50 Score=27.50 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=33.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
+++-..++.|.+++..|+++|..+.+...=...+|+.+.+|...
T Consensus 3 ~~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~ 46 (84)
T PF11414_consen 3 YNMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRH 46 (84)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999988877777888888777543
No 45
>PRK00846 hypothetical protein; Provisional
Probab=54.78 E-value=61 Score=26.67 Aligned_cols=14 Identities=0% Similarity=0.029 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 015923 160 ATDRQLHTVGQRVQ 173 (398)
Q Consensus 160 ~~e~qLq~L~~RLq 173 (398)
.+..+|..|.+||.
T Consensus 45 ~L~~ql~~L~~rL~ 58 (77)
T PRK00846 45 RNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 46
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=54.24 E-value=40 Score=31.43 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
-++|-+.|+++...+..||..|||-...-+.+...|..+|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3677788999988889999999888777777777777665
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.05 E-value=83 Score=32.02 Aligned_cols=52 Identities=13% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
++..+|.+...+..|+...+++....+.+++.+..+++....+.+.+..-++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555666666666666555555554444443
No 48
>PRK00736 hypothetical protein; Provisional
Probab=53.67 E-value=67 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 144 KNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 144 ~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
.+.|-..|.+..++...+..+|..|.+||
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333444444444444
No 49
>PRK11637 AmiB activator; Provisional
Probab=53.52 E-value=81 Score=32.88 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
++.+++.+..+.+.+.++|..+.++...++.++..+..+|...+..-.+++..+.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444433
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=53.34 E-value=38 Score=25.98 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQAT 161 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~ 161 (398)
|+.++..|..++..|..++..|+++...+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665555555555544433
No 51
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=52.80 E-value=89 Score=24.81 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 015923 144 KNVLMQELVRLRQQQQATDRQLHTVGQ------RVQVMEQR 178 (398)
Q Consensus 144 ~~~L~qEL~~LRQqqq~~e~qLq~L~~------RLq~mE~r 178 (398)
...+..++.+|||++..++.-+..|.+ |+++|+++
T Consensus 6 qaeirl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkK 46 (67)
T COG5481 6 QAEIRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKK 46 (67)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 344667788899988888888887765 45555544
No 52
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=52.51 E-value=54 Score=28.34 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
.|.++|.++-.-.++|-+--.+--|..+.++.+|..|..++...|.-.+.++
T Consensus 44 qllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 44 QLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 3566777777777766655555555668889999999999998888777665
No 53
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.34 E-value=53 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
..+.-+....+.|-..|.+..++...++.++..|.+||..+
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444544444444444555555444443
No 54
>PRK04406 hypothetical protein; Provisional
Probab=51.64 E-value=68 Score=26.04 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 015923 178 RQQQMMSFLAK 188 (398)
Q Consensus 178 rQqqmmsfLak 188 (398)
+|++.+.-|.+
T Consensus 36 ~Qq~~I~~L~~ 46 (75)
T PRK04406 36 QQQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 55
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.64 E-value=88 Score=33.35 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
.|+.++..++.+...+..+|....-....++..|..+..+|..++.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666666665553
No 56
>PRK14127 cell division protein GpsB; Provisional
Probab=51.51 E-value=72 Score=27.85 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
++.+-.|.+.|..|+.+|+.+...++.++..+..++...+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455667777777777777777777777777776666443
No 57
>PRK11637 AmiB activator; Provisional
Probab=51.51 E-value=1.2e+02 Score=31.70 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
+++.+.++...+..+|..++++...++.++..+..++..++
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444
No 58
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=51.16 E-value=1.1e+02 Score=24.13 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 144 KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (398)
Q Consensus 144 ~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQq 180 (398)
++.+..||.+.+--+..++.+|+....|...++..-.
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556655555555555555555555555444333
No 59
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.09 E-value=47 Score=33.14 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQ 159 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq 159 (398)
.+..|++||+.|.+|+..++++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777776655444
No 60
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.03 E-value=69 Score=29.90 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
.+..++..|+..+..|..|+..|.+++..++.....|..-+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666666665555433
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.97 E-value=58 Score=32.15 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
..|..++..++++...|..||+.+...+..++.++..+..++..+|.
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888888888888888888888888888877777663
No 62
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.96 E-value=53 Score=28.15 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~ 169 (398)
.+..++++.+.+.+|+.+++++...+..++..|.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666666666655555555444
No 63
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=50.86 E-value=24 Score=38.99 Aligned_cols=71 Identities=28% Similarity=0.365 Sum_probs=41.6
Q ss_pred CCcccccccccccceecCCCCccCCCCcccccCCCccchhcc---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 88 EGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVG---KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQ 164 (398)
Q Consensus 88 ~~F~Rg~~~LL~~IkRrk~~~~~~~qq~~~~~ss~~~~~E~g---~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~q 164 (398)
..|..-+..|++.|+||-..+.... .|.... -..|+.+|+.|+++++.|.+|=..+..-...+..+
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQ-----------nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQ-----------NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred cccCHHHHHHhhccccccccchhcc-----------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888889988743332211 121111 12588999999999998888855544444444444
Q ss_pred HHHHH
Q 015923 165 LHTVG 169 (398)
Q Consensus 165 Lq~L~ 169 (398)
|..|-
T Consensus 548 ls~L~ 552 (604)
T KOG3863|consen 548 LSELY 552 (604)
T ss_pred HHHHH
Confidence 44443
No 64
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.74 E-value=1.2e+02 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
|+..|...=.....|..|+..|+.+...+.++.++......++++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 344444444455666667766666666555555554444444443
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.67 E-value=58 Score=32.08 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 139 ILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 139 ~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
.|....+.|.+||.+||-+.+...++|+.|.+|-...-
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666554443
No 66
>PRK09039 hypothetical protein; Validated
Probab=50.65 E-value=92 Score=31.95 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
+..++..+|........+|..|++|...++.|+..+...|...|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555554444
No 67
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.63 E-value=1.4e+02 Score=26.50 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQq 180 (398)
+...+.++..|+..|...+.+|+.+....+.++.....+...++.+.+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666555555555554333
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.20 E-value=51 Score=31.60 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=14.1
Q ss_pred cCccccc--CCceeEecCCccccccccc
Q 015923 73 YGFRKVD--PDRYEFANEGFLRGQKHLL 98 (398)
Q Consensus 73 YGFrKv~--~d~~eF~h~~F~Rg~~~LL 98 (398)
.||.+|. .++--|-+..|....|.+-
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~ 92 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLR 92 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHH
Confidence 3677773 3333455666666655543
No 69
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=50.09 E-value=1e+02 Score=28.90 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=28.4
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q 015923 128 VGKYGLEEEVEILKRDKNVLMQELVRLRQQQQAT------------DRQLHTVGQRVQVMEQRQQQ 181 (398)
Q Consensus 128 ~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~------------e~qLq~L~~RLq~mE~rQqq 181 (398)
.|...+.+.++.|....+.|...+..|.+..... ..+|..|..+|+.+|++-.+
T Consensus 78 ~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 78 IVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555543333 24455555556665555444
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.82 E-value=73 Score=27.56 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
|+..+..|-.+...|..++..|-++...+.-+-+.|.+||...++
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445555555555555555555555666666655544
No 71
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.40 E-value=83 Score=28.77 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 134 EEEVEILKRDKNVLMQEL------------VRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL------------~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
..+...|++|...|.+|+ .+++.+....+.+++.+.+.+...+.+....+..+..++.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665 5667777777777777777666666666666655544443
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.76 E-value=70 Score=36.09 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQ 157 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQq 157 (398)
.|+.+|++||.|.+...+.=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 47888888888765544433334433
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.66 E-value=77 Score=31.28 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
..+++.++++...+..|+..++.|...++..++.+.+|+...|.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555443
No 74
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.55 E-value=1.6e+02 Score=24.35 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=21.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRD-KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 136 Eve~LKrD-~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqm 182 (398)
+++.+.++ ++.|.+|+..| +..|..|.+|+...+..+.++
T Consensus 9 d~e~~~~e~k~~Li~ei~~L-------Q~sL~~L~~Rve~Vk~E~~kL 49 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILEL-------QDSLEALSDRVEEVKEENEKL 49 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 55555555544 455666666666666555543
No 75
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.46 E-value=1.3e+02 Score=23.39 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
|..+|..|......|..++..+|...+....+-.--.+||.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444444444444444443
No 76
>PRK09039 hypothetical protein; Validated
Probab=46.87 E-value=1.2e+02 Score=31.20 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
...++.....+...|.+||..||.|...++..|...+++....+.+...+-.-|..++
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777777776666555555555444444444
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.84 E-value=1.9e+02 Score=25.52 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQR 178 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~r 178 (398)
|...|.++.-+...|..|+.+|.++...+..+|-.|..+...++..
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888999999999999999999999998888887766543
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.25 E-value=1e+02 Score=27.88 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQL--HTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL--q~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++.....|-+-|..+-.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555544444444333 33444455555555555555544433
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=46.05 E-value=1.3e+02 Score=29.46 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
...++..+++..+.|..|+..|+.+...++.+|..+..++..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 456677777777777777777777777777777766666544
No 80
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.76 E-value=64 Score=25.97 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
....|+.|-..|..+.......+..|...+...|.....+-.-++
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544444433333
No 81
>PRK02119 hypothetical protein; Provisional
Probab=44.80 E-value=1e+02 Score=24.79 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 015923 178 RQQQMMSFLAKAM 190 (398)
Q Consensus 178 rQqqmmsfLak~~ 190 (398)
+|++.+.-|.+-+
T Consensus 34 ~Qq~~id~L~~ql 46 (73)
T PRK02119 34 EQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 82
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.42 E-value=1.1e+02 Score=29.27 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLa 187 (398)
.++..|++|...-..+...+..-.++--.+...+..|++||.++|.+-.+|+..|.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777755444444444433334455677788888888888888888888775
No 83
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=43.85 E-value=1e+02 Score=26.97 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
|+..+..|-.+...|.+++..|-.+...++-+-+.|.+||...
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555666666554
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.81 E-value=1.8e+02 Score=29.82 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhh
Q 015923 138 EILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (398)
Q Consensus 138 e~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~ 202 (398)
.+.+.+...|+.+|+.++++.+..-.+-..|.++|..+...|.+|.+=|.-+=....-...+++.
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888887888888889999999999999887776655555455555544
No 85
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.12 E-value=2.2e+02 Score=25.19 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
+..+++.|+.+.+.|..++..+.++....+.....+...+...+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433
No 86
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=42.79 E-value=92 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQ 159 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq 159 (398)
+..|..|..++..|.+|+..|+.+..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.51 E-value=1.6e+02 Score=29.61 Aligned_cols=64 Identities=13% Similarity=0.312 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcChhH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ---RQQQMMSFLAKAMHSPSF 195 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~---rQqqmmsfLak~~q~P~f 195 (398)
++..+|+.|..+.+.++.++..++.+...+...|..+...+..++. .++.++.-=+|+|+-.|.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555555555555555555555555555555555555555555543 344555555777776543
No 88
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=42.13 E-value=2.1e+02 Score=27.59 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLH 166 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq 166 (398)
+..+.+.|...+..|..|+..|++.|+.++++-+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~ 69 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQ 69 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777777665443
No 89
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=41.69 E-value=80 Score=30.32 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
++|-+.|+.+...+..||+.|||-...-+.....|.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667888888888888888888777777777777775
No 90
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.07 E-value=93 Score=28.22 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQ--QATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqq--q~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
.|.+++..|+.+...|..||..|+... ..+..++..|.+.+..++.|...+-
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555432 2233444444444444444444443
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.92 E-value=1.3e+02 Score=27.16 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
++..+..|..++..+-+||..|.++.+.++.+|..+..+|....
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555444444444333
No 92
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=40.89 E-value=2.4e+02 Score=25.77 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
+..++..++.+...+..++...+++...++..+..+.+.+..+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 93
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.25 E-value=48 Score=32.28 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=45.8
Q ss_pred eeEecCCcccccccccccceecCCCCccCCCCcccccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 83 YEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (398)
Q Consensus 83 ~eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~qq~~~~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e 162 (398)
|-..||.|.+-+++|+..|.=..+..+. ...+ + ..+.++|++...++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t------------VSLv-------e--------------~ql~r~R~~~~~Le 58 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT------------VSLV-------E--------------RQLARLRNRIRELE 58 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe------------eehH-------H--------------HHHHHHHHHHHHHH
Confidence 4457999999999999988543322211 1111 1 23445666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 163 RQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 163 ~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
.++..+.+-=..-|.-+.+++.....+++
T Consensus 59 ~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 59 EELAALMENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666555666666666655555555
No 94
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.23 E-value=88 Score=24.18 Aligned_cols=11 Identities=9% Similarity=0.691 Sum_probs=6.8
Q ss_pred cChhHHHHHhh
Q 015923 191 HSPSFLSQLVQ 201 (398)
Q Consensus 191 q~P~fl~qlvq 201 (398)
.+|.++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 46666666654
No 95
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.51 E-value=1.6e+02 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQ 156 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQ 156 (398)
-.||..||..++.|+.|-..||.
T Consensus 54 l~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777766666654
No 96
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.19 E-value=1.3e+02 Score=28.33 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQ 159 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq 159 (398)
.+..++..|+.+++.|..++..++.+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444444444433
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.07 E-value=1.3e+02 Score=28.82 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=4.3
Q ss_pred hHHHHHhhh
Q 015923 194 SFLSQLVQQ 202 (398)
Q Consensus 194 ~fl~qlvq~ 202 (398)
|.|..|+-+
T Consensus 184 GlllGlilp 192 (206)
T PRK10884 184 GLLLGLLLP 192 (206)
T ss_pred HHHHHHHhc
Confidence 344555543
No 98
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.96 E-value=2e+02 Score=25.42 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 147 LMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 147 L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqm 182 (398)
+..+|..+|.+....-..++.+..+....+++++.+
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 99
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.90 E-value=2e+02 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 141 KRDKNVLMQELVRL--RQQQQATDRQLHTVGQRVQVMEQRQ 179 (398)
Q Consensus 141 KrD~~~L~qEL~~L--RQqqq~~e~qLq~L~~RLq~mE~rQ 179 (398)
.+-...|.+++..| ++....++..|..|..++..++.+-
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444 4444444444444444444444433
No 100
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=37.55 E-value=2.7e+02 Score=24.18 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
++.+-.+...|..|+...-+..+.+...|+.|..||..||
T Consensus 62 V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 62 VDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444455555555444455556666666666666654
No 101
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.44 E-value=2e+02 Score=22.59 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=35.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
..+.+|+...|..+..+...|.....+...+..+|..|..++..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888888888888888888888888888887777554
No 102
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.25 E-value=31 Score=37.35 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
+..+++.+| +.+.|.+||..|++|+. .|.+||...|+
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 345555555 55656666666555544 56666655554
No 103
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.00 E-value=1.6e+02 Score=26.71 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 149 QELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 149 qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
.|+++|+|+-.++.+.=++..=|+
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~ 70 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRV 70 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456666666655555544444333
No 104
>PF14282 FlxA: FlxA-like protein
Probab=37.00 E-value=2.2e+02 Score=24.32 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQ 156 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQ 156 (398)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478899999999999999888876
No 105
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.48 E-value=67 Score=23.90 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRL 154 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~L 154 (398)
++.++..|..++..|.+++..|
T Consensus 30 le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 106
>PRK14127 cell division protein GpsB; Provisional
Probab=36.46 E-value=1.1e+02 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
.+++.|.+++..|..|+.+|+++...++.++
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444333
No 107
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=36.33 E-value=1.7e+02 Score=26.79 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATD 162 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e 162 (398)
++++|+.++..++..|.+-+++.+.+.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~ 28 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELI 28 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555554444444333
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.98 E-value=1.9e+02 Score=31.40 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSF 185 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsf 185 (398)
..+.|.++|..||++.+.+..+.+.+.++|+.+|...++|-.=
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344555555665555555566666666666666555554433
No 109
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.44 E-value=2.7e+02 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQ-ELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 135 ~Eve~LKrD~~~L~q-EL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
..|..||+.++.=|. .|..|..+...+..++..|..+|..+...-+.|+..|
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666665555443 3566666667777777777777766666666666543
No 110
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.24 E-value=2.6e+02 Score=23.24 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~ 167 (398)
|+..|...=-....|..||..|+++...+..+++.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555444
No 111
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.78 E-value=2.6e+02 Score=27.60 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
.+|++.|++++..+..++..+.++|...+.++..+.-.|+.
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999888888888888777755
No 112
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.74 E-value=1.7e+02 Score=22.74 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNV 146 (398)
Q Consensus 133 Le~Eve~LKrD~~~ 146 (398)
++.++.++....+.
T Consensus 5 lEn~~~~~~~~i~t 18 (55)
T PF05377_consen 5 LENELPRIESSINT 18 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 113
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.50 E-value=1.3e+02 Score=32.48 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQ 179 (398)
..+.|+++.+.|.+|+..+.++.+.++.+|..|...+..++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555455555555555666666665555554
No 114
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.05 E-value=3.3e+02 Score=23.98 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhHHHHHh
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHS--PSFLSQLV 200 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~--P~fl~qlv 200 (398)
..++.+...+..|-.....++.+......++......++.++.+......-+..+.++ |.++...+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L 101 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARL 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444333333332 44444444
No 115
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.77 E-value=2.7e+02 Score=23.19 Aligned_cols=51 Identities=18% Similarity=0.444 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQ---QQATDRQLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQq---qq~~e~qLq~L~~RLq~mE~rQqqm 182 (398)
.+..+++.|+.+++.+-.++..+... -..+..++..+.+.+..+|.....+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776655542 2333444444455555555444433
No 116
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.65 E-value=1.2e+02 Score=29.45 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQ 158 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqq 158 (398)
.+..+++++..|.+|+..|+.+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555544
No 117
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.14 E-value=2.2e+02 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015923 137 VEILKRDKNVLMQELVRLRQQQ 158 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqq 158 (398)
++.|......|..|...|+.+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 118
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.03 E-value=41 Score=36.45 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e 162 (398)
+..+|+.||++.+.|++++..+..+...++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 444888888888888888877776654443
No 119
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.01 E-value=3.5e+02 Score=25.50 Aligned_cols=41 Identities=10% Similarity=0.319 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 148 MQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 148 ~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
.+++..++++...+...++.|.++...++.-.+.|+..+.+
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544433
No 120
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.91 E-value=2.7e+02 Score=30.26 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
.|-.++..++++.+.|..|-.+|+++.+.+..+-.++.+|+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 35566777777777777777777777666666666666655
No 121
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.78 E-value=2.9e+02 Score=27.96 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQ 156 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQ 156 (398)
.+-+..|+..++.|+.|+..|++
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 122
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.62 E-value=1.9e+02 Score=25.70 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
++=++.|+...+.|...+..|+.|...++.++..|...|+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777776666665555555554443
No 123
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.58 E-value=2.4e+02 Score=24.04 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 148 MQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179 (398)
Q Consensus 148 ~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQ 179 (398)
.+++.+|+-....+...+..|..+|++++...
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555554433
No 124
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.45 E-value=4.1e+02 Score=24.67 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhh
Q 015923 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (398)
Q Consensus 140 LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~ 202 (398)
|-.-...|..-|..|. +++....+|+.|.+.+...+.+.+.++.-|..+-+ -|..++.+
T Consensus 7 L~~~d~~L~~~L~~l~-~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~~~ 65 (188)
T PF10018_consen 7 LIEADDELSSALEELQ-EHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLPDQ 65 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3333344555555553 45566888888888888888888888888877776 67666643
No 125
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.39 E-value=2.2e+02 Score=24.92 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQR 178 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~r 178 (398)
.+++-++.|++..+.|...+..+.++......++..+.+.++.+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777887777777777777777777777777766666655443
No 126
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.72 E-value=2.6e+02 Score=29.61 Aligned_cols=14 Identities=0% Similarity=0.121 Sum_probs=6.7
Q ss_pred HHHHHHHhcChhHH
Q 015923 183 MSFLAKAMHSPSFL 196 (398)
Q Consensus 183 msfLak~~q~P~fl 196 (398)
...+...+..++|-
T Consensus 405 ~~~i~~~~~~~g~~ 418 (562)
T PHA02562 405 RGIVTDLLKDSGIK 418 (562)
T ss_pred HHHHHHHHHhhhHH
Confidence 34444455555554
No 127
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.53 E-value=3.1e+02 Score=24.39 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqq 181 (398)
++++.++.....+..++..|+.....+..++..+..|...+..|.-+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666555444444444444444444333333
No 128
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.47 E-value=3e+02 Score=22.91 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
++.++..|..|...|-+||-....+...++.--..+..||
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444433333333333333333
No 129
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=31.40 E-value=1.1e+02 Score=30.20 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 160 ATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 160 ~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
.++.+.+.+..+|+.++.+++.|..+++++-+
T Consensus 33 ~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 33 EIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567778888899999999999987765
No 130
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.31 E-value=34 Score=23.03 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.4
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 015923 22 MVEDPSTNDIVSWSSSNNSFIVW 44 (398)
Q Consensus 22 mled~~~~~iIsWs~~G~sFvI~ 44 (398)
+++.+..+.-..|++||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45566667778999999998875
No 131
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.26 E-value=2.3e+02 Score=22.01 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 161 TDRQLHTVGQRVQVMEQRQQQMMSF 185 (398)
Q Consensus 161 ~e~qLq~L~~RLq~mE~rQqqmmsf 185 (398)
.+.+.+.+.+.++.+++.-+.+|+.
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455554555543
No 132
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.19 E-value=2.6e+02 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQ 158 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqq 158 (398)
+..+++.|+++.+.+..++.++++..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l 357 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNL 357 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 133
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.17 E-value=2.3e+02 Score=23.70 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
..++-+..|....+.|..++.++..+...++.+|..+..+|..+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888888888888888888888888888888777654
No 134
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.13 E-value=72 Score=33.04 Aligned_cols=54 Identities=17% Similarity=0.431 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQ----ATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq----~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
|..+++.+|+.......++..+..... .+...+..+++|+..+|.+...|-.-+
T Consensus 110 lkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~ 167 (370)
T PF02994_consen 110 LKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAI 167 (370)
T ss_dssp --------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH
Confidence 556666666655555555555544432 355677777777777777666554433
No 135
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.87 E-value=3e+02 Score=24.68 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 148 MQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 148 ~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
...|.-|+.+....+..++...+.|+.+|...+....-+.+-..
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555566666666666666666665555544444
No 136
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.80 E-value=2.6e+02 Score=25.04 Aligned_cols=53 Identities=8% Similarity=0.238 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
|..-+..+-+..+.+...|...|++ +..+|+.|..+|+.+..-++++.+-+..
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkh---LsqRId~vd~klDe~~ei~~~i~~eV~~ 93 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKH---LSQRIDRVDDKLDEQKEISKQIKDEVTE 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333 2244444444444444444444444333
No 137
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=30.74 E-value=2.4e+02 Score=26.75 Aligned_cols=35 Identities=34% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 139 ILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 139 ~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
+.++-++.--.||-.||+++..++.+|..-..+|+
T Consensus 120 Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLE 154 (179)
T PF13942_consen 120 RYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLE 154 (179)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444443333
No 138
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=1.7e+02 Score=26.76 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
+++-++.|++..+.|...+..+.+....+...+..+.+.++.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555555444444444444444433
No 139
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.01 E-value=1e+02 Score=23.17 Aligned_cols=30 Identities=10% Similarity=0.468 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 154 LRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 154 LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
|++.+..++..+.++-+.+..+|.+.+.|+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777766655
No 140
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.81 E-value=4.3e+02 Score=25.62 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
+..+++.|+.+...|..++..++.++.-+...+.+...|..
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555543
No 141
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.72 E-value=1.3e+02 Score=31.39 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred hccccChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 015923 127 EVGKYGLEEEVEILKRDKNVLMQELVR--LRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 127 E~g~~~Le~Eve~LKrD~~~L~qEL~~--LRQqqq~~e~qLq~L~~RLq~m 175 (398)
..++..|..|++.|+.+-+.|..|+.+ +-+.++.++.+...+.+-+..|
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKM 88 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888888888777665 3444555555555555444443
No 142
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=29.72 E-value=2.2e+02 Score=28.41 Aligned_cols=43 Identities=33% Similarity=0.371 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
+|..|+.+++.+.+.|-+||.-+--||+.++.-|-.++..+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999999999888888899888888877654
No 143
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=29.72 E-value=90 Score=22.94 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQ 157 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQq 157 (398)
-+.++.+||+++-.|..||.++.+|
T Consensus 25 ~d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 25 DDEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567888999999888888877653
No 144
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.67 E-value=2.7e+02 Score=29.35 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHhh
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQ----QQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA-MHSPSFLSQLVQ 201 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQq----qq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~-~q~P~fl~qlvq 201 (398)
..+..+++.|+.+++.+-.++..+.+. .+.+..++..+.+++..+|...+.+-.-+... +.=|.+++--|.
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP 115 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVP 115 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 456788899999999999888765432 33555667777888888887777666555443 333666555553
No 145
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.61 E-value=3e+02 Score=25.59 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
|...|+.| ..++.+.++|..|+++...++.++..+...|..++..-..++
T Consensus 14 L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 456677888999999999999999999988888877666665
No 146
>smart00338 BRLZ basic region leucin zipper.
Probab=29.55 E-value=2.5e+02 Score=21.42 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L 168 (398)
+..|....+.|..|...|+.+...+..++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 147
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.51 E-value=4e+02 Score=24.93 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
....|..++..+..+...+..++..|..++..++.+...++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555555555555544443
No 148
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.11 E-value=4.2e+02 Score=26.07 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
...++..|+.+...|..|+..++.++..+...+.++..|...
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888887778888888877754
No 149
>PRK10722 hypothetical protein; Provisional
Probab=28.97 E-value=2.1e+02 Score=28.45 Aligned_cols=28 Identities=36% Similarity=0.370 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 148 MQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 148 ~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
-.++-+||||+..++.++....++|+.+
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555443
No 150
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.74 E-value=4.3e+02 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
++.+|..|.+.+..|..||-.+..+...+...+
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333
No 151
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.60 E-value=3.2e+02 Score=26.21 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 140 LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
|.+|.+.|.++|..-+.+++..+.....+..+|..=-.++++++.+|.+
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~ 187 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVK 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666667777777777777776666677777776643
No 152
>PRK15396 murein lipoprotein; Provisional
Probab=28.35 E-value=3e+02 Score=22.67 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqm 182 (398)
+++.|..+.+.|..++..+.+..+.+...++.-.+.-.+.-+|...+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444444444444443
No 153
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.22 E-value=4.4e+02 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATD 162 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e 162 (398)
+..+++.|.++.+.|.+|+..++.+...++
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444333
No 154
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.10 E-value=3e+02 Score=21.66 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 015923 146 VLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQL 199 (398)
Q Consensus 146 ~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~ql 199 (398)
.+.+.+.++...+...+..+..++.+....|..-..+-.-|.++-.+...+-++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ 56 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRT 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777777666666666666555444443
No 155
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.85 E-value=3e+02 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhc
Q 015923 178 RQQQMMSFLAKAMH 191 (398)
Q Consensus 178 rQqqmmsfLak~~q 191 (398)
+|++.+.-|.+.++
T Consensus 29 ~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 29 EQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 156
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.85 E-value=2.8e+02 Score=29.05 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqq 181 (398)
.|++=+..++.++..|...|..+.|+-...+.+-+.|...|..+-..|+.
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666666666666655555555555555444443333
No 157
>PRK15396 murein lipoprotein; Provisional
Probab=27.81 E-value=3.5e+02 Score=22.32 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
.|..+|+.|+.+...|.+++..+|..-+....+-.--.+||..+=
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999988888888888888987653
No 158
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.49 E-value=5.3e+02 Score=24.64 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
.++.+++.|+.+...|..|+..++.++.-+...+.++..|.+.
T Consensus 37 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888887788888888877754
No 159
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.30 E-value=4.2e+02 Score=29.85 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQ 180 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQq 180 (398)
.+..+|++|+.+...|.++|..+..+...-+..+..+.+.+.....||-
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~ 131 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQL 131 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555555555555555555554444444433
No 160
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.30 E-value=4.5e+02 Score=28.37 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcChhHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME----QRQQQMMSFLAKAMHSPSFLSQL 199 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE----~rQqqmmsfLak~~q~P~fl~ql 199 (398)
+..+.+.++.+...|.+++.++..++..+.+++..+..+=.+.+ +..+.--.+....++..+-+..+
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sl 251 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSL 251 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 55567778888888888888888888888888877766533333 23333333444444444444433
No 161
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.29 E-value=3.4e+02 Score=30.51 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHH
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFL 196 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl 196 (398)
++..|.+||.+||-+.+.++.+|..+..-+...|...++|..-+...-+.--.|
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL 133 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLL 133 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888888888888888876665554443333
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.27 E-value=5.1e+02 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQ 158 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqq 158 (398)
..+..|+.+...|..++..+....
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 163
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.25 E-value=4.1e+02 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhh
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~ 202 (398)
|+.++++.+.|.+|=..+-++.+.+...+.+|+.=+...+....+...-..+++. -+..|..+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~ 96 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5556666666666655555555555666666666665555555555544444443 34444444
No 164
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.02 E-value=2.7e+02 Score=29.41 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=46.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHhh
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQ---QQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA-MHSPSFLSQLVQ 201 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQq---qq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~-~q~P~fl~qlvq 201 (398)
..+..+++.|+++++.+-.++..+.+. ...+..+...+.+++..+|.+...+-.-+... +.=|.+++--|.
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 346778888888888888888764332 22455566777777777777776665555443 333666655553
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.88 E-value=4.2e+02 Score=26.38 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
+.+..+.+|...+.+..|-..|+.+...++.++..+.+||..+|..-.++-..+.+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445544444555555555556666677777777877777665555544433
No 166
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.67 E-value=5.6e+02 Score=24.30 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 015923 178 RQQQMMSFLA 187 (398)
Q Consensus 178 rQqqmmsfLa 187 (398)
+.-|+-+.|+
T Consensus 162 keaqL~evl~ 171 (201)
T PF13851_consen 162 KEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 167
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.20 E-value=2.7e+02 Score=29.20 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
|.++||..++.|..+|.+.+.-.-.+....+.|+.-+...
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~ 139 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHL 139 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4556666666676666655554444444444444444333
No 168
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=26.17 E-value=4.5e+02 Score=27.39 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=40.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQ---ATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq---~~e~qLq~L~~RLq~mE~rQqqmmsfLak 188 (398)
....+-++.|+.+.+.|..++..|..+.. ...+++..+.+.+...+++...+..+++.
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777777766422 35667778888888888888777666543
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.98 E-value=6.3e+02 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQ 201 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq 201 (398)
.+..|++.|..|+.....||..+.+....++..+.....--...+..-++++.-+.++.. .+..+..
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~---~in~~R~ 102 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD---EINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 356677777777777777777777777777777766655555555555555555545444 4444443
No 170
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=25.90 E-value=5.4e+02 Score=26.13 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQ 159 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq 159 (398)
....|..+++.|..|+.+++.++.
T Consensus 60 rnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 60 RNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555443
No 171
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=25.58 E-value=2.9e+02 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
+..++..|+..++.|..|+..|++++..++..+..|..=+.
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ 149 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMN 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999888888875443
No 172
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.50 E-value=2.3e+02 Score=34.08 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
+.+++..+|.+......++.++++..+.+..+++.+.+|+..+.
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777777777777777777766544
No 173
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.45 E-value=2.6e+02 Score=30.09 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
-|++.|+.|...+..|+..|+.|......+++++..++.+
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888899999999999988888888888888777655
No 174
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=25.37 E-value=35 Score=29.64 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015923 143 DKNVLMQELVRLRQQQQATDR 163 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~ 163 (398)
....|..++.++...|..++.
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~ 78 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQ 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554443333
No 175
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.35 E-value=3.1e+02 Score=23.92 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQAT 161 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~ 161 (398)
.+++.|....+.|.+++..|.++...+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l 32 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEEL 32 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 176
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=25.02 E-value=1.8e+02 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015923 162 DRQLHTVGQRVQVMEQRQ 179 (398)
Q Consensus 162 e~qLq~L~~RLq~mE~rQ 179 (398)
...|..|..||+.+|.++
T Consensus 29 t~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 29 TQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345777888888888765
No 177
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.94 E-value=3.8e+02 Score=24.61 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=10.9
Q ss_pred hHhhhhcccCcccc
Q 015923 65 SFVRQLNTYGFRKV 78 (398)
Q Consensus 65 SFvRQLN~YGFrKv 78 (398)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 58888888888754
No 178
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.81 E-value=3.5e+02 Score=25.34 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
++.++..|+.....+...+..|+.+...++.++..+..+...+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555554433
No 179
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.79 E-value=1.9e+02 Score=32.69 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~ 167 (398)
.+.+.+|.+|...|..||...||.=+.+..++..
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~ 450 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISS 450 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4566788888888888888888877777777543
No 180
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.78 E-value=2.4e+02 Score=29.75 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqq 181 (398)
.+..|+.++.+.+.|..|+.++...+..+..++..|.+-+..+|.-.|.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4556788899999999999999999999999999999998888865443
No 181
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.74 E-value=3.8e+02 Score=22.18 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
.|..++..|+.....|+..+...+.+...++.+=+.|.+.+..
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777776666665555544433
No 182
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.60 E-value=1.6e+02 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923 135 EEVEILKRDKNVLMQEL--VRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH 191 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL--~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q 191 (398)
..+.+|++.+..|++-. ..|..-......++..+.+.+..++.+++.+-.-+..++|
T Consensus 23 ~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 23 IKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666655554221 1111222223334444555555555555555555555555
No 183
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=24.52 E-value=1.9e+02 Score=29.24 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQR 171 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~R 171 (398)
.++.+++.|+++++.|.+|+..++.+....+.-+..+-.+
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777666665555555444443
No 184
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=4.5e+02 Score=24.06 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
-++.+++.|.+-...|.++|..|-++...+..+++.+.++..+
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999998888888888776644
No 185
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.25 E-value=4.4e+02 Score=27.65 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 140 LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
++.+.+.++.|+..|++-. .+|..-.+.|..++++-.|-+..|
T Consensus 223 ~eeeme~~~aeq~slkRt~----EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTE----EELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHHHhhH----HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554433 333333444444444444444333
No 186
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.24 E-value=2e+02 Score=23.99 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 139 ILKRDKNVLMQELVRLRQQQQATDRQL 165 (398)
Q Consensus 139 ~LKrD~~~L~qEL~~LRQqqq~~e~qL 165 (398)
.|-.+...|..++..||.+...+..++
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333334444444444444444444333
No 187
>PRK10698 phage shock protein PspA; Provisional
Probab=24.16 E-value=3.6e+02 Score=25.93 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 146 VLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 146 ~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
.|..++...+.....+..++..|..+|..++.++..|+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555554
No 188
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.98 E-value=6.4e+02 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
.+.+++.|+.+...|..|+..++.++.-+...+.+...|.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888888888877754
No 189
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.94 E-value=2.5e+02 Score=32.09 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 015923 139 ILKRDKNVLMQELVRLRQQQQAT-----------DRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 139 ~LKrD~~~L~qEL~~LRQqqq~~-----------e~qLq~L~~RLq~mE~rQqqmm 183 (398)
.++...+.|.+.|-.||+..+.. .+++..|.+||+..|.|++-+.
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~ 632 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELI 632 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888755444 4567789999999998887664
No 190
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=4.6e+02 Score=29.55 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
.++..+++|++++..|..++..++.....++.++..+..++.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777666665554
No 191
>PRK07737 fliD flagellar capping protein; Validated
Probab=23.84 E-value=3e+02 Score=29.68 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015923 157 QQQATDRQLHTVGQRVQVMEQR 178 (398)
Q Consensus 157 qqq~~e~qLq~L~~RLq~mE~r 178 (398)
+...++.++..+..||...|.|
T Consensus 449 ~i~~l~~~i~~~~~rl~~~e~r 470 (501)
T PRK07737 449 DLNQIETQIDRFQDRLKQIEDR 470 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 192
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.62 E-value=5.6e+02 Score=24.28 Aligned_cols=14 Identities=7% Similarity=0.218 Sum_probs=6.0
Q ss_pred HhcChhHHHHHhhh
Q 015923 189 AMHSPSFLSQLVQQ 202 (398)
Q Consensus 189 ~~q~P~fl~qlvq~ 202 (398)
+.|..+|=.-++.+
T Consensus 137 vqQk~~~kn~lLEk 150 (201)
T PF13851_consen 137 VQQKTGLKNLLLEK 150 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 193
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.54 E-value=3e+02 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 153 RLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 153 ~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
..|.+...+..+|+.|.+||...|
T Consensus 122 ~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 122 QHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 194
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=5.9e+02 Score=23.85 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
++.+|..+-+---...+||-+-++-...++.+-++....|...|.+---.|.||..+-
T Consensus 17 iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~ 74 (180)
T KOG4057|consen 17 IEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVC 74 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556655545555567888888888888999999999999999998888888988753
No 195
>PF14282 FlxA: FlxA-like protein
Probab=23.38 E-value=4.5e+02 Score=22.37 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQE----LVRLRQQQQATDRQLHTVGQRVQVM 175 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qE----L~~LRQqqq~~e~qLq~L~~RLq~m 175 (398)
.|...+..|+.+...|... -..-+++.+.+..+|..|...|..+
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766661 1223445555666666666555443
No 196
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.18 E-value=3.6e+02 Score=22.64 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
.+++-++.+++..+.|..++..+.++...+..++..+...++.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777777776666666666666655543
No 197
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.89 E-value=6.3e+02 Score=23.98 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 144 KNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 144 ~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
...|..++..++.....+..++..|...+..++.++..|+
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555544
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=2.7e+02 Score=31.29 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=11.5
Q ss_pred CCCCcHHHHHHHhccCC
Q 015923 10 NSLPPFLSKIYDMVEDP 26 (398)
Q Consensus 10 ~~~~~Fl~KLy~mled~ 26 (398)
+..|-|+.|+-.+++-.
T Consensus 298 tp~P~~V~KiAasf~A~ 314 (652)
T COG2433 298 TPAPETVKKIAASFNAV 314 (652)
T ss_pred CCChHHHHHHHHHcCCc
Confidence 34677888887776653
No 199
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=22.75 E-value=1.7e+02 Score=27.01 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQ 156 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQ 156 (398)
-+++|+.+.+.|+.++...|.
T Consensus 35 G~~~L~~El~~L~~~i~~Ar~ 55 (160)
T PRK06342 35 GLKALEDQLAQARAAYEAAQA 55 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555543
No 200
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.71 E-value=4.7e+02 Score=26.27 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=3.2
Q ss_pred CCCCCee
Q 015923 235 IPNGQIV 241 (398)
Q Consensus 235 ~~~~~iv 241 (398)
..+|.|.
T Consensus 277 P~dG~V~ 283 (423)
T TIGR01843 277 PVDGTVQ 283 (423)
T ss_pred CCCcEEE
Confidence 3445443
No 201
>PLN02320 seryl-tRNA synthetase
Probab=22.64 E-value=3.6e+02 Score=29.50 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHhh
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQ--QQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM-HSPSFLSQLVQ 201 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQ--qqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~-q~P~fl~qlvq 201 (398)
.+..+++.|+.+++.+-.++...++ +.+.+..++..|.+++..+|...+.+-+-|...+ .=|.++.--|.
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP 176 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVP 176 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 4566778888888877777654111 1223444556666666666666665554444333 33555555443
No 202
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=22.60 E-value=4.1e+02 Score=28.55 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
|..=+++--.++..|+.-|.+.+++.+..-..++.+.++|...|+.|+.-|.-|
T Consensus 28 MK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~l 81 (436)
T PF01093_consen 28 MKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMAL 81 (436)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555688999999999999999999999999999999998888554433
No 203
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.57 E-value=4.3e+02 Score=21.54 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHT 167 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~ 167 (398)
+..=+..|+.+-..++.|...||++...+..+|..
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557789999999999999999999888877743
No 204
>PF15456 Uds1: Up-regulated During Septation
Probab=22.56 E-value=3.2e+02 Score=24.25 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L 168 (398)
.+||+.||++...|-.-+..+|.... ++..+.+.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdA 54 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDA 54 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 57788888887777777666666554 44444333
No 205
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.54 E-value=4e+02 Score=22.57 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
++-+..|+...+.+...+..+.++...++.++..+...|+.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666655555555555554443
No 206
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.54 E-value=4.2e+02 Score=29.33 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
.++.++..+|+++..|..|+.+|+++...+..+|+.+...|
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 47889999999999999999999999999999998887654
No 207
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.52 E-value=2.7e+02 Score=23.85 Aligned_cols=9 Identities=0% Similarity=0.069 Sum_probs=4.1
Q ss_pred hhHHHHHhh
Q 015923 193 PSFLSQLVQ 201 (398)
Q Consensus 193 P~fl~qlvq 201 (398)
+.++.....
T Consensus 64 ~dyiEe~AR 72 (105)
T PRK00888 64 QEAIEERAR 72 (105)
T ss_pred HHHHHHHHH
Confidence 345554443
No 208
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.50 E-value=1.6e+02 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 147 LMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 147 L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
|..++..++.+.......+.++.+|+
T Consensus 23 l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 23 LEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444434444444444444
No 209
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.48 E-value=6.1e+02 Score=25.62 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~ 189 (398)
.+..++..+.+.+.+..|+.+..+....+..++..+..||..+|.+=-.|-.-+..+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=22.24 E-value=84 Score=32.92 Aligned_cols=75 Identities=15% Similarity=0.334 Sum_probs=44.3
Q ss_pred HHHHHHHhccCCCCC----CceEEcCCCCeEEEecccchhhhhcc----------------cccCCCChhhHhhhhcccC
Q 015923 15 FLSKIYDMVEDPSTN----DIVSWSSSNNSFIVWKVAEFSRDLLP----------------KYFKHSNFSSFVRQLNTYG 74 (398)
Q Consensus 15 Fl~KLy~mled~~~~----~iIsWs~~G~sFvI~d~~~F~~~vLP----------------~yFkh~nfsSFvRQLN~YG 74 (398)
|..|-|.+|..-..+ .-|.|+|||+..+|||...=.+ |+- +|-.-..|..-+|-||..-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 456778888765443 2489999999999999754333 221 1222334555666666654
Q ss_pred cccccCCceeEecCCccccc
Q 015923 75 FRKVDPDRYEFANEGFLRGQ 94 (398)
Q Consensus 75 FrKv~~d~~eF~h~~F~Rg~ 94 (398)
++-.. ||-|..=.++-
T Consensus 242 Wk~f~----eflhl~s~~dp 257 (447)
T KOG4497|consen 242 WKPFG----EFLHLCSYHDP 257 (447)
T ss_pred eeehh----hhccchhccCc
Confidence 44332 56665544443
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.22 E-value=3.7e+02 Score=29.20 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189 (398)
Q Consensus 136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~ 189 (398)
++++.|...+.+.+|+..+.+.+..++. +-+.+|++.+|+-.-+.++
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~-------~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEA-------EKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444 4444444444444444443
No 212
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=22.20 E-value=2.4e+02 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
+.++.|++..+.+-..|..++..|+.+......++..|.+.|.++..
T Consensus 67 y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 67 YNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 213
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.17 E-value=2.9e+02 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
|...++.|+.+...+..+..++++..+....++..|.+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 214
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.08 E-value=5.4e+02 Score=23.89 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015923 164 QLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 164 qLq~L~~RLq~mE~rQqqm 182 (398)
++..+.+++..++..-..|
T Consensus 159 ~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 215
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.87 E-value=6e+02 Score=23.00 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~ 189 (398)
.-++..|+.+.+...+++...++......++|..+....+.-++.|.++-.-++.+
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~ 73 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQA 73 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888787777776555443
No 216
>PRK14163 heat shock protein GrpE; Provisional
Probab=21.83 E-value=5.8e+02 Score=24.83 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
..+.+.|+.....|..|+..++.++..+...+.+...|...
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777777777888777754
No 217
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.83 E-value=3.7e+02 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTV 168 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L 168 (398)
+..++.+.+.|..++..++++...++.++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555544
No 218
>PHA01750 hypothetical protein
Probab=21.69 E-value=2.8e+02 Score=22.53 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 015923 147 LMQELVRLRQQQQAT 161 (398)
Q Consensus 147 L~qEL~~LRQqqq~~ 161 (398)
..+||..|+.+.+.+
T Consensus 40 V~~ELdNL~~ei~~~ 54 (75)
T PHA01750 40 VNSELDNLKTEIEEL 54 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 219
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.51 E-value=4.3e+02 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQ 170 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~ 170 (398)
+..+-+++|..+..|..|+.+++++...++.++..|..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888777777666666666553
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.48 E-value=7.6e+02 Score=26.53 Aligned_cols=43 Identities=12% Similarity=0.343 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQ 177 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~ 177 (398)
.+++..++|.+.+..++...+++.+.++.+|..++..+..++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ 80 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEA 80 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666555554
No 221
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=21.47 E-value=2.1e+02 Score=24.24 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhHHHHHhhh
Q 015923 150 ELVRLRQQQQATDRQLHTVGQRVQVME-QRQQQMMSFLAKAMHSPSFLSQLVQQ 202 (398)
Q Consensus 150 EL~~LRQqqq~~e~qLq~L~~RLq~mE-~rQqqmmsfLak~~q~P~fl~qlvq~ 202 (398)
|+.+|.+=......+|+.+.+++...- .....++..-..++++|.|...+...
T Consensus 36 E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~ 89 (123)
T PF05524_consen 36 EIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEEL 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHH
Confidence 344444444444445555555543221 23336777777889999998876654
No 222
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.45 E-value=7.4e+02 Score=24.22 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015923 148 MQELVRLRQQQQATDRQLHTVGQ 170 (398)
Q Consensus 148 ~qEL~~LRQqqq~~e~qLq~L~~ 170 (398)
..|+..+|.+.+.+..++..+..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhcccc
Confidence 33444444444444433333333
No 223
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=21.43 E-value=3.5e+02 Score=20.12 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 143 DKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 143 D~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
.++.|-.+|..|... |.+..+-|+.|-..+ ..|.+|.+..
T Consensus 3 q~s~L~~qL~qL~aN-------L~~t~~~l~~~s~Q~-~~i~~LG~~~ 42 (45)
T PF08227_consen 3 QYSHLASQLAQLQAN-------LADTENLLEMTSIQA-NSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 344444444444443 444444444443333 7777777654
No 224
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.23 E-value=4e+02 Score=20.75 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM 183 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm 183 (398)
..|+.|-.|.+.|...+..|.+....+...++...+.-.+.-+|...+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4677788888888888887777777777777777666666556655543
No 225
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.11 E-value=7e+02 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV 174 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~ 174 (398)
...+++.|+.+...|..++..++.++..+...++++..|...
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777777777777777777777643
No 226
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.95 E-value=4.6e+02 Score=22.08 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVME 176 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE 176 (398)
|..+|..|+.+...|.+++..++..-+....+-..-.+||..+.
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55666666666666666666666665555555566666666544
No 227
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.94 E-value=3.1e+02 Score=33.79 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 137 VEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 137 ve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
...|.++.+.|.+-+.+|-+-|+.+-.--..|.++-.+|-.+|.+++..+.|++
T Consensus 1573 ~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~ 1626 (1634)
T PLN03223 1573 GDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKIL 1626 (1634)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhc
Confidence 566666666666666666654444433334555566666667777666666554
No 228
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=20.90 E-value=6.1e+02 Score=26.84 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhccccccccccCC
Q 015923 140 LKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSN 214 (398)
Q Consensus 140 LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~~~~~~~~~~~~~ 214 (398)
+..|...+...+..++-+++.++..++.+++.+..+-.+-+++|.-....+| -....++..-....++..+.
T Consensus 328 ~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLq---avgdtlhnlasvparI~~~r 399 (400)
T COG5613 328 LNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQ---AVGDTLHNLASVPARIVSGR 399 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhcCchHhhccC
No 229
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=20.86 E-value=7.5e+02 Score=24.39 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Q 015923 134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLS 197 (398)
Q Consensus 134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~ 197 (398)
.-+...+.++-..+..++..++.-.+.++.-+..+.+.+..+-+..++++.-+.+.+++-+-+.
T Consensus 236 ~i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~ 299 (306)
T PF04888_consen 236 QIASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQ 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444444445555555555555556666666666666444333
No 230
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.85 E-value=4.5e+02 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ 173 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq 173 (398)
.++=++.|+.+...+..++..++.+...+..++..+...|.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777787778877777777777766666665553
No 231
>PLN02678 seryl-tRNA synthetase
Probab=20.80 E-value=4.2e+02 Score=28.45 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=41.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHh
Q 015923 131 YGLEEEVEILKRDKNVLMQELVRLRQQ---QQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH-SPSFLSQLV 200 (398)
Q Consensus 131 ~~Le~Eve~LKrD~~~L~qEL~~LRQq---qq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q-~P~fl~qlv 200 (398)
..+..+++.|+.+++.+-.++..++.. -..+..++..|.+.+..+|.....+-+-|..++. =|..++--|
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 346677888888888888877653321 2233445566667777777666665555544443 255555444
No 232
>PHA01750 hypothetical protein
Probab=20.74 E-value=3.3e+02 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 141 KRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172 (398)
Q Consensus 141 KrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL 172 (398)
+++...|..|+..++.+|.+++.|+..+..++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555443
No 233
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.71 E-value=4.5e+02 Score=27.99 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 153 RLRQQQQATDRQLHTVGQRVQVMEQR 178 (398)
Q Consensus 153 ~LRQqqq~~e~qLq~L~~RLq~mE~r 178 (398)
.+..+...++.++..+..||+..|.|
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555543
No 234
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.68 E-value=6e+02 Score=25.35 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqm 182 (398)
.+.+.++.+..+++.|..|+.++.-++...+..+..|...+..+|..-+.+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777777777777777777776666666666655555555444443
No 235
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.60 E-value=6e+02 Score=24.24 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 015923 140 LKRDKNVLMQELVRL 154 (398)
Q Consensus 140 LKrD~~~L~qEL~~L 154 (398)
++.....|..++.++
T Consensus 68 ~~~r~~~l~~~i~~~ 82 (302)
T PF10186_consen 68 LRERLERLRERIERL 82 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 236
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.37 E-value=5.2e+02 Score=22.96 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015923 154 LRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAM 190 (398)
Q Consensus 154 LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~ 190 (398)
+......++..-.....|+..+.+++..+..-+-+++
T Consensus 56 i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 56 INDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433334445556666666655554443333
No 237
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.18 E-value=5.6e+02 Score=25.43 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189 (398)
Q Consensus 133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~ 189 (398)
-.+..++.+|.|..+...-.+-|+.+..+.+++..|..-.+.+..+-.+|-.-|.++
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888878777777777777777766666665555555444443
No 238
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.16 E-value=4.7e+02 Score=22.05 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 135 EEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVG 169 (398)
Q Consensus 135 ~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~ 169 (398)
=.+.+++++++.|..|...|+.+....+.|+.+-.
T Consensus 23 ~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 23 WKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777776666666655555555433
No 239
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.07 E-value=5.3e+02 Score=27.36 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923 132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186 (398)
Q Consensus 132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfL 186 (398)
.+.+|+..+|..+..|..++.+|+.+. ...++.+.+.|+.-..|++.|-.-|
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~---~~e~~~~~~~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQY---QREYQFILEALQEERYRYERLEEQL 267 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 366778888888888888888777643 2344455555555555555554333
Done!