BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015924
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 11/172 (6%)
Query: 5 NEIDKIDDVMLP-GFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKLA 63
E D + + LP GFRF+PTDEEL+ YL RK ++LI ++D+YK+DPW LP A
Sbjct: 7 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 66
Query: 64 TAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYR 123
GEKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S++G + +G+KK+LVFY
Sbjct: 67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFYI 124
Query: 124 GRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 175
G+A KG KT+W+MHE+RL + KL D W +CRI+KK +S
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL--------DDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 11/172 (6%)
Query: 5 NEIDKIDDVMLP-GFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKLA 63
E D + + LP GFRF+PTDEEL+ YL RK ++LI ++D+YK+DPW LP A
Sbjct: 10 QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 69
Query: 64 TAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYR 123
GEKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S++G + +G+KK+LVFY
Sbjct: 70 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFYI 127
Query: 124 GRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 175
G+A KG KT+W+MHE+RL + KL D W +CRI+KK +S
Sbjct: 128 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL--------DDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 111/160 (69%), Gaps = 5/160 (3%)
Query: 16 PGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKLATAGEKEWYFYCP 75
PGFRFHPTD+ELV YL RK + LP+ +I +VD+YK+DPWDLP+ A G +EWYF+ P
Sbjct: 17 PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP 76
Query: 76 RDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDWM 135
RDRKY N +RPNR G G+WKATG D+P+ + + +G+KK+LVFY G+A +G+KTDW+
Sbjct: 77 RDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKALVFYAGKAPRGVKTDWI 134
Query: 136 MHEFRLPSLTYSAPQKKLLDKTIPPNDAWAICRIFKKTNS 175
MHE+RL +A K + D W +CR++ K N
Sbjct: 135 MHEYRLADAGRAAAGAKKGSLRL---DDWVLCRLYNKKNE 171
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 374 SNLPWDSPPCTSEMSTTYSTNN 395
N+PW S C+S ++TTYS+ N
Sbjct: 217 GNVPWYSEACSSTLATTYSSGN 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,363,821
Number of Sequences: 62578
Number of extensions: 518247
Number of successful extensions: 901
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 5
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)