Query 015924
Match_columns 398
No_of_seqs 189 out of 987
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.7E-55 5.9E-60 401.9 14.7 167 3-175 5-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.1E-55 7.1E-60 400.1 13.2 166 1-176 4-169 (171)
3 2c4b_A Barnase mcoeeti fusion; 30.8 28 0.00096 30.7 2.7 33 23-58 4-38 (143)
4 1cmb_A Met APO-repressor; DNA- 22.4 98 0.0033 25.5 4.3 37 21-61 50-86 (104)
5 3nr5_A MAF1, repressor of RNA 18.2 33 0.0011 30.8 0.7 13 46-58 119-131 (164)
6 1ldd_A APC2WHB, anaphase promo 13.8 98 0.0034 24.2 2.3 26 15-41 37-63 (74)
7 3cpr_A Dihydrodipicolinate syn 9.4 98 0.0033 29.4 1.2 18 14-32 118-135 (304)
8 3fkr_A L-2-keto-3-deoxyarabona 8.9 1.4E+02 0.0047 28.5 2.0 18 14-32 110-130 (309)
9 1f6k_A N-acetylneuraminate lya 8.3 1.2E+02 0.0042 28.4 1.4 18 14-32 106-123 (293)
10 3dz1_A Dihydrodipicolinate syn 7.9 1.5E+02 0.0053 28.1 1.9 17 14-32 109-125 (313)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.7e-55 Score=401.87 Aligned_cols=167 Identities=49% Similarity=1.019 Sum_probs=135.6
Q ss_pred ccccccccCCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCcccccCCCceEEEEecccccccC
Q 015924 3 DKNEIDKIDDVMLPGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKLATAGEKEWYFYCPRDRKYRN 82 (398)
Q Consensus 3 e~~~m~k~~~~LPPGfRF~PTDEELV~~YL~rKi~g~pLp~~~I~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rK~~~ 82 (398)
.+++++ ....|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+||||++|++||++
T Consensus 5 ~~~~~~-~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~ 83 (174)
T 3ulx_A 5 RERDAE-AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPN 83 (174)
T ss_dssp ----CC-STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC----
T ss_pred cccccc-cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCC
Confidence 344444 3467999999999999999999999999999999999999999999999999877888999999999999999
Q ss_pred CCCCceecccceeeccCCCccEEcCCCCeEEEEEEEEEEeecCCCCCCccCceEeeeecCCCCCCCcccccccCCCCCCC
Q 015924 83 SARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPPND 162 (398)
Q Consensus 83 G~R~nR~tggGyWK~tG~~k~I~~~~G~~vIG~KKtLvFY~Grap~g~KT~WvMhEYrL~~~~~~s~~~~~~~~~~~~~d 162 (398)
|.|++|++++||||++|++++|... +++||+||+|+||.|+++++.||+|+||||+|......+... .......+
T Consensus 84 g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~---~~~~~~~~ 158 (174)
T 3ulx_A 84 GSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA---KKGSLRLD 158 (174)
T ss_dssp -CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------CCS
T ss_pred CCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc---ccCCCCCC
Confidence 9999999999999999999999864 489999999999999999999999999999998643221100 11112467
Q ss_pred ceEEEEEEecCCc
Q 015924 163 AWAICRIFKKTNS 175 (398)
Q Consensus 163 d~VLCRIykK~~s 175 (398)
+|||||||+|++.
T Consensus 159 ~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 159 DWVLCRLYNKKNE 171 (174)
T ss_dssp SEEEEEEEESCC-
T ss_pred CEEEEEEEEcCCC
Confidence 9999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.1e-55 Score=400.14 Aligned_cols=166 Identities=50% Similarity=0.925 Sum_probs=134.5
Q ss_pred CCccccccccCCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCcccccCCCceEEEEecccccc
Q 015924 1 MDDKNEIDKIDDVMLPGFRFHPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPKLATAGEKEWYFYCPRDRKY 80 (398)
Q Consensus 1 M~e~~~m~k~~~~LPPGfRF~PTDEELV~~YL~rKi~g~pLp~~~I~evDVY~~ePwdLP~~~~~ge~eWYFFspr~rK~ 80 (398)
|+.++.-......|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+||||+++++||
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 66665444455789999999999999999999999999999999999999999999999998778899999999999999
Q ss_pred cCCCCCceecccceeeccCCCccEEcCCCCeEEEEEEEEEEeecCCCCCCccCceEeeeecCCCCCCCcccccccCCCCC
Q 015924 81 RNSARPNRVTGAGFWKATGTDRPIYSSDGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLTYSAPQKKLLDKTIPP 160 (398)
Q Consensus 81 ~~G~R~nR~tggGyWK~tG~~k~I~~~~G~~vIG~KKtLvFY~Grap~g~KT~WvMhEYrL~~~~~~s~~~~~~~~~~~~ 160 (398)
++|.|++|++++||||++|++++|... +++||+||+|+||+|+++++.||+|+||||+|..... ......
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--------~~~~~~ 153 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--------RNGSTK 153 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------------
T ss_pred CCCCcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--------ccCccc
Confidence 999999999999999999999999873 4899999999999999999999999999999986421 011234
Q ss_pred CCceEEEEEEecCCch
Q 015924 161 NDAWAICRIFKKTNSM 176 (398)
Q Consensus 161 ~dd~VLCRIykK~~s~ 176 (398)
.++|||||||+|+++.
T Consensus 154 ~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 154 LDDWVLCRIYKKQSSA 169 (171)
T ss_dssp -CCEEEEEEEECC---
T ss_pred CCCEEEEEEEEcCCCC
Confidence 6799999999998753
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=30.76 E-value=28 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHhCCCCCcCcee--eccCCCCCCCC
Q 015924 23 TDEELVGFYLKRKIQHRPLPIELIK--QVDIYKYDPWD 58 (398)
Q Consensus 23 TDEELV~~YL~rKi~g~pLp~~~I~--evDVY~~ePwd 58 (398)
|+++-|..||.. ...||..+|. +++--+++|-+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 556667788876 3458888885 56777888854
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=22.42 E-value=98 Score=25.45 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcCceeeccCCCCCCCCCcc
Q 015924 21 HPTDEELVGFYLKRKIQHRPLPIELIKQVDIYKYDPWDLPK 61 (398)
Q Consensus 21 ~PTDEELV~~YL~rKi~g~pLp~~~I~evDVY~~ePwdLP~ 61 (398)
|-|.-||+..-...-..|+|||. +.|+-+..|.++|+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~ 86 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPE 86 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchH
Confidence 56888999887778889999997 67999999999997
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=18.15 E-value=33 Score=30.80 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=10.9
Q ss_pred eeeccCCCCCCCC
Q 015924 46 IKQVDIYKYDPWD 58 (398)
Q Consensus 46 I~evDVY~~ePwd 58 (398)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 4688999999983
No 6
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.84 E-value=98 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCceeCC-ChHHHHHHHHHHHHhCCCC
Q 015924 15 LPGFRFHP-TDEELVGFYLKRKIQHRPL 41 (398)
Q Consensus 15 PPGfRF~P-TDEELV~~YL~rKi~g~pL 41 (398)
|.|+.|.. |++||-. ||-+|+....|
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 55899999 9999887 69999976543
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=9.43 E-value=98 Score=29.40 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=14.4
Q ss_pred CCCCceeCCChHHHHHHHH
Q 015924 14 MLPGFRFHPTDEELVGFYL 32 (398)
Q Consensus 14 LPPGfRF~PTDEELV~~YL 32 (398)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 668899999999873
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.92 E-value=1.4e+02 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=14.3
Q ss_pred CCCCce---eCCChHHHHHHHH
Q 015924 14 MLPGFR---FHPTDEELVGFYL 32 (398)
Q Consensus 14 LPPGfR---F~PTDEELV~~YL 32 (398)
+|| |. |.||+++|+.||-
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHH
T ss_pred cCC-CCccCCCCCHHHHHHHHH
Confidence 566 54 8999999999864
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.33 E-value=1.2e+02 Score=28.42 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.2
Q ss_pred CCCCceeCCChHHHHHHHH
Q 015924 14 MLPGFRFHPTDEELVGFYL 32 (398)
Q Consensus 14 LPPGfRF~PTDEELV~~YL 32 (398)
+|| |.|.|++++|+.||-
T Consensus 106 ~~P-~y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYD 123 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 445 558999999999874
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.87 E-value=1.5e+02 Score=28.11 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCCCceeCCChHHHHHHHH
Q 015924 14 MLPGFRFHPTDEELVGFYL 32 (398)
Q Consensus 14 LPPGfRF~PTDEELV~~YL 32 (398)
+|| | |.||+++|+.||-
T Consensus 109 ~~P-~-~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APP-P-SLRTDEQITTYFR 125 (313)
T ss_dssp CCC-T-TCCSHHHHHHHHH
T ss_pred CCC-C-CCCCHHHHHHHHH
Confidence 566 4 5699999999864
Done!