BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015926
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 26/282 (9%)
Query: 119 KFKDGFPNLFIPNAHGIRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPF 176
+F DG + I +RG+ V L S +P + E + ++ AL + T +P+
Sbjct: 38 RFSDGEIQVEIQ--ENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPY 95
Query: 177 FPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCF 236
F +R VA + A++++N+ G ++T D+HA Q + +F + +
Sbjct: 96 FGYARQDRRPRSARVAIS---AKVVANM-LEIAGVERIITMDLHADQIQGFFDIPVDNIY 151
Query: 237 ESAIPLLLN--RLQQLPDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRDGNQRI 291
A P+LL R Q PD + + PD G R KQL I+ + N
Sbjct: 152 --ATPILLGDLRKQNYPD---LLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAE 206
Query: 292 VRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWERFKQ 351
V G+ GR VI+DD+V + GTL + +VL GA ++ AY TH + + +R
Sbjct: 207 VMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRI-- 264
Query: 352 DTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIA 393
S L ++D+ P++ E ++ P LS AG +A
Sbjct: 265 -----AASALDELVVTDTIPLSA-ESLACPKIRALSSAGLLA 300
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 16/273 (5%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQ-LPDSDNISIAFP 261
N+ S G ++T D+HA Q + +F + + A P +L +++ + + N +I P
Sbjct: 114 NM-LSVAGADHIITMDLHAAQIQGFFDIPVDNLY--AEPAVLKWIRENISEWRNCTIVSP 170
Query: 262 DDGAWKRFHKQLQHFPM---IVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLI 318
D G KR + ++ + + N+ + GD + R ++VDD+ + GT+
Sbjct: 171 DAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTIC 230
Query: 319 ECQKVLAAHGAAKISAYVTHGIFPNASWERFKQ 351
L + GA ++ A +THGIF + R
Sbjct: 231 HAADKLLSAGATRVYAILTHGIFSGPAISRINN 263
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 16/273 (5%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQ-LPDSDNISIAFP 261
N+ S G ++T D+HA Q + +F + + A P +L +++ + + N +I P
Sbjct: 114 NM-LSVAGADHIITMDLHASQIQGFFDIPVDNLY--AEPAVLKWIRENISEWRNCTIVSP 170
Query: 262 DDGAWKRFHKQLQHFPM---IVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLI 318
D G KR + ++ + + N+ + GD + R ++VDD+ + GT+
Sbjct: 171 DAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCGTIC 230
Query: 319 ECQKVLAAHGAAKISAYVTHGIFPNASWERFKQ 351
L + GA ++ A +THGIF + R
Sbjct: 231 HAADKLLSAGATRVYAILTHGIFSGPAISRINN 263
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 22/276 (7%)
Query: 85 MKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLA 144
M + +F L++++A + +EL + +KF + + I +RG+ V +
Sbjct: 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEI--GESVRGEDVYIVQ 57
Query: 145 SFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILS 202
S + E L +I A S T V+P FP +D+ D + A A++++
Sbjct: 58 SGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYAR----QDKKDKSRAPISAKLVA 113
Query: 203 NIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQQ-LPDSDNISI 258
N+ S G ++T D+HA Q + +F D ++ A P +L +++ + + N +I
Sbjct: 114 NM-LSVAGADHIITMDLHASQIQGFFDIPVDNLM-----AEPAVLKWIRENISEWRNCTI 167
Query: 259 AFPDDGAWKRFHKQLQHFPM---IVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGG 315
PD G KR + ++ + + N+ + GD + R ++VDD+ + G
Sbjct: 168 VSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDRVAILVDDMADTCG 227
Query: 316 TLIECQKVLAAHGAAKISAYVTHGIFPNASWERFKQ 351
T+ L + GA ++ A +THGIF + R
Sbjct: 228 TICHAADKLLSAGATRVYAILTHGIFSGPAISRINN 263
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 16/273 (5%)
Query: 86 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLAS 145
K + +F LA+ +A ++L + +F DG + I + IRG + S
Sbjct: 8 KNLKIFSLNSNPELAKEIA-DIVGVQLGKCSVTRFSDGEVQINIEES--IRGCDCYIIQS 64
Query: 146 FSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSN 203
S P I E L ++ AL + + +V+P++ +R + TA A +L
Sbjct: 65 TSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLET 124
Query: 204 IPTSRGGPTSLVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDD 263
G T ++ D+HA Q + +F I +P+L + + ++I I PD
Sbjct: 125 -----AGATRVIALDLHAPQIQGFFDIPIDHLM--GVPILGEYFEG-KNLEDIVIVSPDH 176
Query: 264 GAWKRFHKQLQHF--PMIVCNKVR-DGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIEC 320
G R K P+ + +K R N V G+ G+ +++DD++ + GT+
Sbjct: 177 GGVTRARKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNIEGKTAILIDDIIDTAGTITLA 236
Query: 321 QKVLAAHGAAKISAYVTHGIFPNASWERFKQDT 353
L +GA ++ A TH + + ER T
Sbjct: 237 ANALVENGAKEVYACCTHPVLSGPAVERINNST 269
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 116 NWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLP 175
+ R+F DG L++ + G ++ + + S ++ E + + A+ S ++ P
Sbjct: 30 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 87
Query: 176 FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFY----FGDT 231
++ + G+ ++ L I S+ S + T DIH + Y F D
Sbjct: 88 YYGYARQHQRYKNGEPISSQILTEIYSSYSNS------IATVDIHDEKTLSYSKVKFSD- 140
Query: 232 ILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRDGN 288
L ++ + R + D D + PDDG R +L + K D
Sbjct: 141 -LHANDAIV-----RYYKNVDVD--YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDR 192
Query: 289 QRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWER 348
+++ D G+ ++IVDD++ +GGT+ + +L GA+KI HG+F N S +
Sbjct: 193 TVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENK 252
Query: 349 FKQD 352
Q+
Sbjct: 253 ILQN 256
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 116 NWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGKIFEQLSVIYALPKLFVSSFTLVLP 175
+ R+F DG L++ + G ++ + + S ++ E + + A+ S ++ P
Sbjct: 28 DERRFPDG--ELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYRTKSVNIIAP 85
Query: 176 FFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFY----FGDT 231
++ + G+ ++ L I S+ S + T DIH + Y F D
Sbjct: 86 YYGYARQHQRYKNGEPISSQILTEIYSSYSNS------IATVDIHDEKTLSYSKVKFSD- 138
Query: 232 ILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRDGN 288
L ++ + R + D D + PDDG R +L + K D
Sbjct: 139 -LHANDAIV-----RYYKNVDVD--YVVSPDDGGLARVADISAKLGKKHFFIEKKRIDDR 190
Query: 289 QRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPNASWER 348
+++ D G+ ++IVDD++ +GGT+ + +L GA+KI HG+F N S +
Sbjct: 191 TVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENK 250
Query: 349 FKQD 352
Q+
Sbjct: 251 ILQN 254
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 19/288 (6%)
Query: 95 ETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVAFLASFSSPGK-IF 153
++ +LA +VA + +L + +++F D +++ I + + + I
Sbjct: 8 QSQNLAFKVAKLLNT-KLTRVEYKRFPDN--EIYVRIVDEINDDEAVIINTQKNQNDAIV 64
Query: 154 EQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTS 213
E + + AL V TLV P+ ++ + G+ + LA+I SNI
Sbjct: 65 ETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNIVDK------ 118
Query: 214 LVTFDIHALQERFYFGDTILPCFESAIPLLLNRLQQLPDSDNISIAFPDDGA--WKRFHK 271
L+T + H + +F TI + A+P L ++ +D I +A PD GA + +
Sbjct: 119 LITINPHETHIKDFF--TIPFIYGDAVPKLAEYVKD-KLNDPIVLA-PDKGALEFAKTAS 174
Query: 272 QLQHFPMIVCNKVRDGNQRI-VRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAA 330
++ + K R I + K D + R + IVDD++ +GGT+ K+L GA
Sbjct: 175 KILNAEYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAK 234
Query: 331 KISAYVTHGIFPNASWERFKQDTGGKPESGLTYFWISDSCPVTVKEVM 378
KI A H + + + + G E T ++S+ V+V EV+
Sbjct: 235 KIIAACVHPVLIGDALNKLY--SAGVEEVVGTDTYLSEVSKVSVAEVI 280
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 61/304 (20%)
Query: 135 IRGQHVAFLASFSSP--GKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVA 192
+RG+ V + + S I E L ++YA S V+P+FP +M G +
Sbjct: 77 VRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIV 136
Query: 193 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCFE-SAIPLLLNRLQ-QL 250
+ LA ++ + G T L+T D+H + + +F +P A P LL +Q ++
Sbjct: 137 SKL-LASMM-----CKAGLTHLITMDLHQKEIQGFFN---IPVDNLRASPFLLQYIQEEI 187
Query: 251 PDSDNISIAFPDDGAWKR---FHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRH---- 303
PD N I + KR F ++L+ ++ + +D +V + P R
Sbjct: 188 PDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAI 247
Query: 304 ----------------IVIVDDLVQSGG--------------TLIECQKVLAAHGAAKIS 333
I +V D+ GG + + + L GA KI
Sbjct: 248 HPSLEIPMLIPKEKPPITVVGDV---GGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIF 304
Query: 334 AYVTHGIFPNASWERFKQDTGGKPESGLTYFWISDSCPVTVKEVMSKPPFEVLSLAGSIA 393
THG+ + + R + ES + ++++ P V+++ P + + ++ ++
Sbjct: 305 VMATHGLLSSDAPRRIE-------ESAIDEVVVTNTIPHEVQKLQC-PKIKTVDISMILS 356
Query: 394 SALQ 397
A++
Sbjct: 357 EAIR 360
>pdb|2C4K|A Chain A, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|B Chain B, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|C Chain C, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|D Chain D, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|E Chain E, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
pdb|2C4K|F Chain F, Crystal Structure Of Human Phosphoribosylpyrophosphate
Synthetase-Associated Protein 39 (Pap39)
Length = 370
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 115/282 (40%), Gaps = 57/282 (20%)
Query: 135 IRGQHVAFLASF--SSPGKIFEQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVA 192
+RGQ + + + + E L + YAL + V+P+FP +M G +
Sbjct: 74 VRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIV 133
Query: 193 TAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFG---DTILPCFESAIPLLLNRLQ- 248
LA +L ++ G T ++T D+H + + +F D + A P LL +Q
Sbjct: 134 CKL-LASML-----AKAGLTHIITMDLHQKEIQGFFSFPVDNL-----RASPFLLQYIQE 182
Query: 249 QLPDSDNISIAFPDDGAWKR--------------FHKQLQ----------HFPMIVCN-K 283
++P+ N I A KR H + Q H P +V N
Sbjct: 183 EIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNAT 242
Query: 284 VRDGNQR-IVRIKE-------GDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAY 335
V G + ++ KE GD GR +IVDD++ + + ++L GA KI
Sbjct: 243 VHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVM 302
Query: 336 VTHGIFPNASWERFKQDTGGKPESGLTYFWISDSCPVTVKEV 377
THGI +A R + ES + ++++ P V+++
Sbjct: 303 ATHGIL-SAEAPRLIE------ESSVDEVVVTNTVPHEVQKL 337
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 276 FPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHG 328
PM G+ + +I+ +G+ +V+V+DL+ +GG+ I C + L G
Sbjct: 112 LPMCYVRSKAKGHGKGNQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAG 164
>pdb|2QBU|A Chain A, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
pdb|2QBU|B Chain B, Crystal Structure Of Methanothermobacter
Thermautotrophicus Cbil
Length = 232
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 175 PFFP-TGTSERMEDEGDVATAFTLARILSNIPT---SRGGPTSLVTFDIHALQERFY--- 227
P FP T + +E D A A + + G P+ TF LQ+R
Sbjct: 65 PVFPMTDDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYSTF--SYLQQRIEDMG 122
Query: 228 FGDTILPCFESAIPLLLNRLQQLPDSDNISIAFP--DDGAWKRFHKQLQHFPMIVCNKVR 285
F ++P S + L + D I + P DD RF + L+ V K
Sbjct: 123 FKTEMVPGVTSFTACAATAGRTLVEGDEILLVVPRVDD----RFERVLRDVDACVIMKTS 178
Query: 286 DGNQRIVRIKEGDPRGRHIVIV------DDLVQSG 314
+R + + E DPRG+ +V V D++V+ G
Sbjct: 179 RHGRRAMEVVESDPRGKDVVSVANCSMDDEVVERG 213
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 281 CNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGI 340
CN G IV +G+H++IV+D++ +G TL++ + L K A I
Sbjct: 117 CNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKF-EIKTVAIACLFI 175
Query: 341 FPNASWERFKQDTGG 355
W FK D G
Sbjct: 176 KRTPLWNGFKADFVG 190
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 281 CNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGI 340
CN G IV +G+H++IV+D++ +G TL++ + L K A I
Sbjct: 136 CNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKF-EIKTVAIACLFI 194
Query: 341 FPNASWERFKQDTGG 355
W FK D G
Sbjct: 195 KRTPLWNGFKADFVG 209
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1GRV|A Chain A, Hypoxanthine Phosphoribosyltransferase From E. Coli
pdb|1GRV|B Chain B, Hypoxanthine Phosphoribosyltransferase From E. Coli
Length = 182
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 28/38 (73%)
Query: 288 NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLA 325
+ +I++ + D RG+ ++IV+D++ SG TL + +++L+
Sbjct: 83 DLKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILS 120
>pdb|1A97|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|C Chain C, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|D Chain D, Xprtase From E. Coli Complexed With Gmp
Length = 148
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 273 LQHFPMIVCNKVRDGNQRIVRI-KEGDPRGRHIVIVDDLVQSGGTLIECQKV 323
++H + + NQR +++ K + G +++DDLV +GGT + +++
Sbjct: 50 IRHVDTVAISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREM 101
>pdb|1A98|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp
Length = 152
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 273 LQHFPMIVCNKVRDGNQRIVRI-KEGDPRGRHIVIVDDLVQSGGTLIECQKV 323
++H + + NQR +++ K + G +++DDLV +GGT + +++
Sbjct: 52 IRHVDTVAISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREM 103
>pdb|1J7J|A Chain A, Crystal Structure Of The Hprt From Salmonella Typhimurium
pdb|1J7J|B Chain B, Crystal Structure Of The Hprt From Salmonella Typhimurium
Length = 178
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 288 NQRIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLA 325
+ +I++ + D RG+ ++IV+D++ SG TL + +++L
Sbjct: 79 DVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILG 116
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 27/36 (75%)
Query: 290 RIVRIKEGDPRGRHIVIVDDLVQSGGTLIECQKVLA 325
RI++ + D +G+ +++V+D++ +G TL + +++LA
Sbjct: 80 RILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILA 115
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 256 ISIAFPDDGAWKRFHKQLQHFPMIVCNKVRDGNQRIVRIKEGDPRGRHIVIVDDLVQSGG 315
+++ P + R ++ F ++CN+ ++ R+V + G+P ++ I ++ S G
Sbjct: 649 LAVHLPQGAHYMRALSNVEGFERLICNQKKENETRVVLCELGNPMKKNAQIGIAMLVSVG 708
Query: 316 TLIE 319
L E
Sbjct: 709 NLEE 712
>pdb|1NUL|A Chain A, Xprtase From E. Coli
pdb|1NUL|B Chain B, Xprtase From E. Coli
pdb|1A95|A Chain A, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|B Chain B, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|C Chain C, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|D Chain D, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|A Chain A, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|B Chain B, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|D Chain D, Xprtase From E. Coli With Bound Cprpp And Xanthine
Length = 152
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 273 LQHFPMIVCNKVRDGNQRIVRI-KEGDPRGRHIVIVDDLVQSGGTLIECQKV 323
++H + + NQR +++ K + G +++DDLV +GGT + +++
Sbjct: 52 IRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREM 103
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 274 QHFPMIVCNKVRDGNQRIVRIKEGDP---RGRHIVIVDDLVQSGGTLIECQKVLAAHGAA 330
+H ++ C R R++ IKEG+ R V+ DD+++S L Q++L
Sbjct: 37 KHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRS---LAISQRLLGTREII 93
Query: 331 KISAYVTHGI--FPNASWERFKQDTGGKPESGLTYFWISDSCPVTVKEV 377
+ + G+ F + ++R QD E+G+ W +S P V++V
Sbjct: 94 LLH-HTDCGMLTFTDDDFKRAIQD-----ETGIRPTWSPESYPDAVEDV 136
>pdb|1DBR|A Chain A, Hypoxanthine Guanine Xanthine
pdb|1DBR|B Chain B, Hypoxanthine Guanine Xanthine
pdb|1DBR|C Chain C, Hypoxanthine Guanine Xanthine
pdb|1DBR|D Chain D, Hypoxanthine Guanine Xanthine
Length = 231
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 300 RGRHIVIVDDLVQSGGTLIECQKVLAAHG 328
R +H++IV+D+V +G TL E + L A G
Sbjct: 138 RDKHVLIVEDIVDTGFTLTEFGERLKAVG 166
>pdb|1QK3|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK3|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Gmp Complex
pdb|1QK4|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1QK4|D Chain D, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Imp Complex
pdb|1FSG|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
pdb|1FSG|C Chain C, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase Complexed With 9-Deazaguanine,
Alpha-D-5-Phosphoribosyl-1- Pyrophosphate (Prpp) And Two
Mg2+ Ions
Length = 233
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 300 RGRHIVIVDDLVQSGGTLIECQKVLAAHG 328
R +H++IV+D+V +G TL E + L A G
Sbjct: 141 RDKHVLIVEDIVDTGFTLTEFGERLKAVG 169
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 296 EGD-PRGRHIVIVDDLVQSGGTLIECQKVLAAHGAAKISAYV 336
EG+ +G +VI+DDLV +G T +E + L + G +S V
Sbjct: 359 EGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVV 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,723,034
Number of Sequences: 62578
Number of extensions: 468275
Number of successful extensions: 942
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 29
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)