Query 015927
Match_columns 398
No_of_seqs 136 out of 1278
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 2.1E-50 4.5E-55 395.1 28.7 345 39-393 58-465 (467)
2 KOG1304 Amino acid transporter 100.0 9.8E-48 2.1E-52 359.7 27.6 337 35-392 41-449 (449)
3 KOG1303 Amino acid transporter 100.0 2.2E-46 4.7E-51 356.8 25.6 344 34-394 31-436 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1.5E-46 3.3E-51 365.7 -0.9 335 39-389 1-408 (409)
5 PLN03074 auxin influx permease 100.0 6.3E-42 1.4E-46 333.8 28.7 338 35-397 40-456 (473)
6 KOG1305 Amino acid transporter 100.0 2.9E-42 6.3E-47 327.0 21.7 348 37-397 2-410 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.9E-37 6.2E-42 273.1 3.5 339 35-396 111-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.2E-31 2.7E-36 257.9 29.5 336 36-388 4-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 7.1E-23 1.5E-27 196.0 30.6 322 39-382 1-392 (394)
10 PRK10483 tryptophan permease; 99.9 8.6E-23 1.9E-27 193.6 29.8 327 36-386 6-404 (414)
11 PRK09664 tryptophan permease T 99.9 2.6E-22 5.6E-27 190.1 28.8 327 38-386 6-405 (415)
12 PRK15132 tyrosine transporter 99.9 1E-21 2.2E-26 187.2 28.2 321 42-386 4-393 (403)
13 TIGR00837 araaP aromatic amino 99.9 2.9E-21 6.4E-26 186.1 24.4 294 47-360 3-359 (381)
14 PRK13629 threonine/serine tran 99.8 4.6E-18 9.9E-23 161.4 29.1 323 47-386 25-440 (443)
15 TIGR00814 stp serine transport 99.8 1.8E-17 3.9E-22 158.6 23.8 294 44-357 6-376 (397)
16 TIGR00912 2A0309 spore germina 99.6 1.1E-12 2.3E-17 125.6 24.8 239 39-301 1-240 (359)
17 PRK10655 potE putrescine trans 99.5 2.9E-11 6.3E-16 118.8 32.7 241 36-295 3-245 (438)
18 KOG1287 Amino acid transporter 99.5 9.8E-13 2.1E-17 125.5 19.3 314 35-367 8-393 (479)
19 TIGR00905 2A0302 transporter, 99.5 3.8E-11 8.3E-16 119.0 30.3 247 37-297 5-256 (473)
20 TIGR03810 arg_ornith_anti argi 99.5 7.8E-11 1.7E-15 116.7 30.9 246 39-298 1-253 (468)
21 PRK10644 arginine:agmatin anti 99.5 3.5E-10 7.5E-15 111.4 34.4 245 35-298 4-250 (445)
22 PRK10435 cadB lysine/cadaverin 99.5 1.9E-10 4E-15 112.9 31.6 243 36-298 2-246 (435)
23 TIGR00911 2A0308 L-type amino 99.5 1E-10 2.2E-15 116.8 29.3 248 36-297 39-293 (501)
24 PRK10249 phenylalanine transpo 99.5 1.9E-10 4.1E-15 113.5 30.3 239 36-297 18-267 (458)
25 TIGR00909 2A0306 amino acid tr 99.4 3.5E-11 7.5E-16 118.0 23.9 249 38-296 2-252 (429)
26 PRK15049 L-asparagine permease 99.4 2.1E-10 4.6E-15 114.2 29.4 240 37-297 26-278 (499)
27 PRK11021 putative transporter; 99.4 1.6E-09 3.5E-14 105.6 32.5 227 42-293 2-231 (410)
28 PRK10746 putative transport pr 99.4 1.8E-09 3.9E-14 106.6 32.1 243 36-297 7-258 (461)
29 PF03845 Spore_permease: Spore 99.4 4.8E-10 1E-14 105.4 26.9 236 40-301 1-236 (320)
30 TIGR00930 2a30 K-Cl cotranspor 99.4 1.2E-10 2.5E-15 122.9 24.4 246 36-295 73-336 (953)
31 PRK11049 D-alanine/D-serine/gl 99.4 2.2E-09 4.9E-14 106.3 31.1 242 36-296 17-268 (469)
32 TIGR01773 GABAperm gamma-amino 99.4 1.9E-09 4E-14 106.5 30.4 240 36-296 9-258 (452)
33 PRK10238 aromatic amino acid t 99.3 2.2E-09 4.9E-14 105.9 29.3 234 36-290 9-251 (456)
34 PRK11357 frlA putative fructos 99.3 1.4E-09 3.1E-14 107.1 27.8 242 36-295 5-251 (445)
35 PRK10580 proY putative proline 99.3 6.5E-09 1.4E-13 102.7 32.2 238 36-294 6-254 (457)
36 PRK10836 lysine transporter; P 99.3 9.9E-09 2.1E-13 102.3 32.6 244 36-297 12-263 (489)
37 PRK11387 S-methylmethionine tr 99.3 4.1E-09 8.8E-14 104.6 29.7 243 37-298 12-265 (471)
38 PF13520 AA_permease_2: Amino 99.3 4.1E-09 9E-14 103.2 28.6 243 42-301 2-248 (426)
39 TIGR00908 2A0305 ethanolamine 99.3 9E-09 2E-13 101.3 30.2 234 36-293 4-245 (442)
40 TIGR00906 2A0303 cationic amin 99.3 2.3E-09 5E-14 108.0 26.4 255 36-296 25-288 (557)
41 TIGR00913 2A0310 amino acid pe 99.3 1.5E-08 3.3E-13 100.8 30.6 234 38-293 1-251 (478)
42 KOG3832 Predicted amino acid t 99.2 7.9E-10 1.7E-14 92.4 12.7 222 40-270 11-303 (319)
43 PRK10197 gamma-aminobutyrate t 99.1 1.1E-07 2.4E-12 93.6 28.2 220 51-294 4-236 (446)
44 COG0531 PotE Amino acid transp 99.1 3.3E-07 7.1E-12 90.9 29.7 250 36-300 9-262 (466)
45 COG1113 AnsP Gamma-aminobutyra 99.0 1.4E-06 3E-11 82.7 30.1 236 37-289 11-253 (462)
46 TIGR03428 ureacarb_perm permea 98.9 6.6E-06 1.4E-10 81.8 32.2 258 36-299 10-273 (475)
47 PRK15238 inner membrane transp 98.7 6.5E-05 1.4E-09 75.1 32.2 239 37-294 5-266 (496)
48 TIGR00907 2A0304 amino acid pe 98.7 2.2E-05 4.7E-10 78.3 28.4 246 37-292 10-270 (482)
49 COG3949 Uncharacterized membra 98.7 1.2E-05 2.7E-10 72.9 23.7 227 44-298 6-237 (349)
50 KOG1286 Amino acid transporter 98.6 5.3E-07 1.2E-11 89.7 14.0 251 36-297 27-290 (554)
51 TIGR00910 2A0307_GadC glutamat 98.6 0.0001 2.2E-09 73.9 28.1 230 38-292 3-247 (507)
52 TIGR03813 put_Glu_GABA_T putat 98.5 0.00015 3.3E-09 72.1 28.3 52 248-299 202-254 (474)
53 COG0833 LysP Amino acid transp 98.4 0.00012 2.6E-09 71.2 23.5 240 37-291 42-286 (541)
54 KOG1289 Amino acid transporter 98.3 0.00017 3.7E-09 70.1 21.7 64 238-301 250-314 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.0029 6.4E-08 62.3 30.3 253 38-301 11-273 (442)
56 PF00324 AA_permease: Amino ac 98.3 8.6E-06 1.9E-10 81.1 12.0 239 50-301 6-262 (478)
57 PRK11375 allantoin permease; P 98.0 0.017 3.6E-07 57.5 29.7 217 69-293 57-281 (484)
58 COG1457 CodB Purine-cytosine p 97.8 0.04 8.6E-07 53.4 27.5 175 98-302 78-258 (442)
59 PF00474 SSF: Sodium:solute sy 97.7 0.023 5E-07 55.3 24.2 105 38-143 5-112 (406)
60 PRK09442 panF sodium/panthothe 97.7 0.07 1.5E-06 53.3 30.6 108 36-143 38-150 (483)
61 TIGR02358 thia_cytX probable h 97.7 0.064 1.4E-06 51.8 27.8 231 43-307 7-240 (386)
62 TIGR02119 panF sodium/pantothe 97.5 0.13 2.7E-06 51.2 32.0 108 36-143 37-149 (471)
63 PRK12488 acetate permease; Pro 97.5 0.15 3.2E-06 51.8 32.6 106 37-143 65-172 (549)
64 TIGR00835 agcS amino acid carr 97.5 0.0041 8.8E-08 60.1 15.1 85 38-123 44-138 (425)
65 PF02554 CstA: Carbon starvati 97.4 0.013 2.8E-07 54.8 16.5 107 37-143 48-155 (376)
66 PRK11017 codB cytosine permeas 97.4 0.15 3.3E-06 49.5 26.4 205 68-301 38-245 (404)
67 COG0591 PutP Na+/proline sympo 97.3 0.21 4.5E-06 49.9 29.8 107 37-143 36-147 (493)
68 TIGR00796 livcs branched-chain 97.3 0.19 4.2E-06 48.1 28.9 73 48-125 2-77 (378)
69 KOG1288 Amino acid transporter 97.0 0.02 4.4E-07 57.1 14.5 55 241-295 295-350 (945)
70 TIGR02711 symport_actP cation/ 97.0 0.53 1.1E-05 47.8 31.8 106 37-143 65-172 (549)
71 KOG2082 K+/Cl- cotransporter K 96.6 0.43 9.3E-06 48.6 20.1 103 39-142 113-219 (1075)
72 TIGR00813 sss transporter, SSS 96.6 0.76 1.6E-05 44.7 28.5 106 38-144 2-109 (407)
73 PRK15015 carbon starvation pro 96.5 0.22 4.8E-06 50.1 17.3 104 40-143 82-186 (701)
74 COG1966 CstA Carbon starvation 96.4 0.32 6.9E-06 47.9 17.2 107 37-143 48-155 (575)
75 PF02133 Transp_cyt_pur: Perme 96.3 0.093 2E-06 51.7 14.0 110 38-148 6-117 (440)
76 COG0733 Na+-dependent transpor 96.3 0.42 9.2E-06 46.1 17.6 63 231-293 205-268 (439)
77 PRK09395 actP acetate permease 95.9 2.5 5.3E-05 43.0 32.0 107 36-143 66-174 (551)
78 TIGR03648 Na_symport_lg probab 95.7 2.9 6.3E-05 42.5 31.1 107 36-143 29-137 (552)
79 KOG2083 Na+/K+ symporter [Inor 95.4 0.027 5.8E-07 55.5 5.6 222 46-290 40-274 (643)
80 PRK00701 manganese transport p 95.4 2.9 6.4E-05 41.1 28.9 41 100-140 92-132 (439)
81 TIGR02121 Na_Pro_sym sodium/pr 95.4 3.3 7.2E-05 41.4 31.2 79 37-116 34-118 (487)
82 PRK10484 putative transporter; 95.4 3.6 7.7E-05 41.6 31.6 91 36-127 35-126 (523)
83 COG1953 FUI1 Cytosine/uracil/t 95.0 4 8.6E-05 40.2 27.2 204 100-311 101-318 (497)
84 PF00209 SNF: Sodium:neurotran 94.0 7.7 0.00017 39.2 19.7 110 180-292 189-302 (523)
85 KOG2466 Uridine permease/thiam 93.9 4.1 8.9E-05 39.8 15.8 268 36-311 51-332 (572)
86 COG1914 MntH Mn2+ and Fe2+ tra 93.2 8.8 0.00019 37.3 27.4 44 100-143 75-118 (416)
87 PRK15419 proline:sodium sympor 90.4 21 0.00046 35.8 31.3 107 36-143 37-152 (502)
88 PF01235 Na_Ala_symp: Sodium:a 90.3 19 0.00041 35.1 15.9 57 36-93 14-71 (416)
89 TIGR00796 livcs branched-chain 90.2 3.8 8.3E-05 39.4 11.1 47 100-146 253-299 (378)
90 COG4147 DhlC Predicted symport 88.9 25 0.00054 34.6 22.7 185 91-297 93-294 (529)
91 PF05525 Branch_AA_trans: Bran 86.4 5 0.00011 39.1 9.3 48 100-147 259-306 (427)
92 TIGR00906 2A0303 cationic amin 84.0 52 0.0011 33.5 15.9 57 101-162 298-354 (557)
93 TIGR00909 2A0306 amino acid tr 81.5 30 0.00066 33.7 12.8 48 101-148 263-310 (429)
94 PF05525 Branch_AA_trans: Bran 76.9 78 0.0017 31.0 25.0 75 41-119 3-80 (427)
95 COG1115 AlsT Na+/alanine sympo 74.5 90 0.002 30.6 14.4 161 36-218 58-231 (452)
96 PRK15433 branched-chain amino 70.5 45 0.00097 32.7 10.2 44 102-145 265-308 (439)
97 COG4709 Predicted membrane pro 62.9 96 0.0021 26.4 9.8 59 35-97 70-129 (195)
98 PF01566 Nramp: Natural resist 62.6 1.4E+02 0.0031 28.3 21.2 44 100-143 40-83 (358)
99 PF05915 DUF872: Eukaryotic pr 57.6 69 0.0015 25.0 7.2 67 41-107 39-112 (115)
100 PF05805 L6_membrane: L6 membr 53.6 40 0.00087 28.9 5.8 66 330-395 43-118 (195)
101 TIGR03750 conj_TIGR03750 conju 53.1 1.1E+02 0.0023 23.8 9.2 58 39-96 16-74 (111)
102 PF13520 AA_permease_2: Amino 52.9 2.1E+02 0.0046 27.6 11.8 45 104-148 260-304 (426)
103 PRK10644 arginine:agmatin anti 52.8 2.1E+02 0.0046 28.0 11.8 45 100-144 258-302 (445)
104 PRK10655 potE putrescine trans 50.5 2.3E+02 0.0049 27.7 11.6 46 101-146 257-302 (438)
105 KOG1289 Amino acid transporter 46.7 2.5E+02 0.0054 28.4 10.7 47 99-145 322-368 (550)
106 KOG3660 Sodium-neurotransmitte 45.9 3.7E+02 0.0079 28.0 16.4 33 39-71 36-69 (629)
107 PRK10435 cadB lysine/cadaverin 44.4 3.1E+02 0.0068 26.7 11.9 46 100-145 254-299 (435)
108 KOG3659 Sodium-neurotransmitte 43.2 3.9E+02 0.0084 27.4 16.3 91 38-129 79-174 (629)
109 PRK09950 putative transporter; 42.4 3E+02 0.0065 27.7 10.8 99 39-137 82-206 (506)
110 TIGR00842 bcct choline/carniti 42.2 3E+02 0.0064 27.3 10.6 93 40-132 36-154 (453)
111 PLN00151 potassium transporter 41.8 4.7E+02 0.01 28.1 14.5 27 312-338 474-500 (852)
112 KOG1287 Amino acid transporter 40.3 2.1E+02 0.0046 28.4 9.2 40 104-144 275-314 (479)
113 PRK13183 psbN photosystem II r 40.1 34 0.00073 21.7 2.4 29 274-302 6-34 (46)
114 PF11990 DUF3487: Protein of u 38.8 1.9E+02 0.0042 22.7 8.9 72 16-95 3-76 (121)
115 KOG4812 Golgi-associated prote 37.9 58 0.0013 28.8 4.4 73 315-389 161-245 (262)
116 TIGR00905 2A0302 transporter, 37.5 4.2E+02 0.0091 26.2 11.6 45 104-148 270-314 (473)
117 PF03169 OPT: OPT oligopeptide 37.5 2.2E+02 0.0048 29.5 9.5 64 53-117 365-430 (624)
118 TIGR00908 2A0305 ethanolamine 37.0 4.1E+02 0.0088 25.9 12.5 43 101-143 259-303 (442)
119 PF02468 PsbN: Photosystem II 36.9 35 0.00076 21.3 2.1 27 276-302 5-31 (43)
120 CHL00020 psbN photosystem II p 36.4 29 0.00063 21.6 1.7 28 275-302 4-31 (43)
121 TIGR03810 arg_ornith_anti argi 35.7 4.4E+02 0.0096 26.0 12.9 46 103-148 265-310 (468)
122 PRK11021 putative transporter; 35.3 4E+02 0.0087 25.7 10.6 46 101-146 245-290 (410)
123 COG1292 BetT Choline-glycine b 34.9 2.3E+02 0.0051 28.5 8.5 23 40-62 87-109 (537)
124 PRK15433 branched-chain amino 33.1 4.9E+02 0.011 25.7 26.9 71 42-116 9-82 (439)
125 TIGR02840 spore_YtaF putative 30.8 3E+02 0.0065 23.9 7.9 31 65-95 150-180 (206)
126 PRK11387 S-methylmethionine tr 30.5 5.4E+02 0.012 25.4 13.4 47 101-147 274-320 (471)
127 PF08019 DUF1705: Domain of un 29.8 3.1E+02 0.0068 22.4 8.1 16 344-359 73-88 (156)
128 KOG2349 Na+:iodide/myo-inosito 29.1 2.4E+02 0.0052 28.9 7.7 93 36-129 42-135 (585)
129 TIGR00267 conserved hypothetic 28.7 88 0.0019 26.2 4.1 29 39-67 85-113 (169)
130 PF11085 YqhR: Conserved membr 27.0 3.8E+02 0.0083 22.5 8.9 63 53-127 47-111 (173)
131 KOG1277 Endosomal membrane pro 25.8 6.7E+02 0.014 24.9 11.6 22 275-296 556-577 (593)
132 PF10716 NdhL: NADH dehydrogen 25.5 2.6E+02 0.0057 20.2 5.3 49 327-376 11-61 (81)
133 TIGR00911 2A0308 L-type amino 24.9 7E+02 0.015 24.8 11.6 41 106-147 308-348 (501)
134 COG3162 Predicted membrane pro 24.8 2E+02 0.0044 21.7 4.7 24 301-324 54-78 (102)
135 PF00324 AA_permease: Amino ac 24.5 73 0.0016 31.6 3.3 46 103-148 275-320 (478)
136 KOG2174 Leptin receptor gene-r 23.8 2.8E+02 0.0061 21.9 5.5 31 43-73 65-95 (131)
137 TIGR00930 2a30 K-Cl cotranspor 23.2 1E+03 0.022 26.2 16.3 33 116-148 386-418 (953)
138 PRK03356 L-carnitine/gamma-but 23.1 7.9E+02 0.017 24.8 12.2 96 39-134 84-206 (504)
139 KOG1304 Amino acid transporter 23.0 1.7E+02 0.0037 28.8 5.3 21 35-55 38-58 (449)
140 PRK11901 hypothetical protein; 23.0 1.2E+02 0.0026 28.3 4.1 22 3-24 4-25 (327)
141 PF03348 Serinc: Serine incorp 22.7 6.5E+02 0.014 24.8 9.3 62 281-342 81-146 (429)
142 KOG1286 Amino acid transporter 22.0 4.5E+02 0.0097 26.9 8.3 83 114-201 315-406 (554)
143 PF07954 DUF1689: Protein of u 20.4 1.9E+02 0.0042 23.8 4.4 58 335-392 33-91 (152)
144 PF07857 DUF1632: CEO family ( 20.3 4E+02 0.0086 24.1 6.8 11 12-22 144-154 (254)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.1e-50 Score=395.13 Aligned_cols=345 Identities=22% Similarity=0.363 Sum_probs=276.9
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (398)
.+++..++++++.|+++|+|+|++|++|+++||++|++++++++.++.||.+++.+++++.+..+|+|++++++||++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhH
Q 015927 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (398)
Q Consensus 119 i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (398)
++++.+.++++|.|++|+++.+|.++..+++... .++.+.. ...|..+ .++.+++++|++++|+++.++++|.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r~~~-~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNRLLT-SLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcEEee-eehhhhHhhhcccccchHHHHHHHH
Confidence 9999999999999999999999999777653211 1122111 1123222 3334568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC---c----cccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-
Q 015927 199 LSVGLAIVFVVITAGVAIVKTIDGSISMP---C----LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (398)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~- 270 (398)
++. .++++.++.+. .+...++..+.. + ..++....+...+.+.++|+++|||.||.++|++++|||+|+
T Consensus 211 i~~-~~i~~~vi~iv--i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~ 287 (467)
T PTZ00206 211 IAV-SFMVYLVIVIV--VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV 287 (467)
T ss_pred HHH-HHHHHHHhhhh--hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch
Confidence 998 44444433322 122222211100 0 001111122234578899999999999999999999999866
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcc-h-------------------------------------
Q 015927 271 -QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF-D------------------------------------- 311 (398)
Q Consensus 271 -~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~------------------------------------- 311 (398)
|+.++...++.+++++|..+|++||++||+++++|++.|+ |
T Consensus 288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~ 367 (467)
T PTZ00206 288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG 367 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC
Confidence 8889999999999999999999999999999999999999 4
Q ss_pred -------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhc---CCCCchhhHHHHHHHHH
Q 015927 312 -------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDT---HGIATKNDRLASWLMIS 375 (398)
Q Consensus 312 -------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~---~~~~~~~~~~~~~~~~~ 375 (398)
.+..+.+.+.++|+++|+++.+++++||++++.++|++|+++|++.. +++.++++++.++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli 447 (467)
T PTZ00206 368 WDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLI 447 (467)
T ss_pred CCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHH
Confidence 12234555678999999999999999999999999999999999842 22233445678999999
Q ss_pred HHHHHHHHhhHHHHHHhh
Q 015927 376 LAVSSSTVAVSSDIYSIF 393 (398)
Q Consensus 376 ~g~~~~~~~~~~~i~~~~ 393 (398)
+|++..+.|||+++++.+
T Consensus 448 ~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 448 TGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhheEEecchhHhhHHh
Confidence 999999999999999876
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-48 Score=359.65 Aligned_cols=337 Identities=21% Similarity=0.340 Sum_probs=282.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCCHHHHH
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA------SKSATYSGVV 108 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~------~~~~~y~~l~ 108 (398)
.+.++..|..++..++.+.++|+|+|++|++|+++||+.|.+...+++.++.||.+.+++|.+. ....+|.+.+
T Consensus 41 ~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~ 120 (449)
T KOG1304|consen 41 RDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETA 120 (449)
T ss_pred ccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999999999863 1345677766
Q ss_pred HHH----------cChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHH
Q 015927 109 ADA----------FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTL 178 (398)
Q Consensus 109 ~~~----------~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (398)
+.+ +||++|.+++..+++.++|.|++|+++++++++++.+. .. ...++.+.+++ +.+
T Consensus 121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~----------~~-~~~~s~~~~i~--~~~ 187 (449)
T KOG1304|consen 121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE----------HS-PGVLSVRLYIL--IQL 187 (449)
T ss_pred HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc----------cC-CCCccHHHHHH--HHH
Confidence 655 48999999999999999999999999999999776641 11 11223333332 345
Q ss_pred HHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccc
Q 015927 179 FVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258 (398)
Q Consensus 179 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~ 258 (398)
...+|+++.|+++.|...|.++- +++++.+.+..++.++...+. . +.+...++.++...+|+.+|||+++..
T Consensus 188 ~~~lll~~Ir~Lk~Lsp~Sl~An----v~~~~g~~ii~~y~~~~~~~~-~---~~~~~~~~~~~~lf~GtaifafEGig~ 259 (449)
T KOG1304|consen 188 PPLLLLNLIRNLKILSPFSLFAN----VFILVGLAIIMYYLVQDLPPT-S---DLPAVTGWSGLPLFFGTAIFAFEGIGM 259 (449)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHH----HHHHHHHHHHHHHHHhccCCc-c---ccccccchhhhHHHHHHHHHHhccceE
Confidence 57778888888888877777665 334444445556655543322 2 222334466778889999999999999
Q ss_pred hhHHHhhcCCccchh---HHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch------------------------
Q 015927 259 IHPIENELKDPTQIK---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD------------------------ 311 (398)
Q Consensus 259 i~~i~~~m~~~~~~~---~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~------------------------ 311 (398)
+.|+.++||+|++++ +++..++.++.++|..+|.+||++|||++++.++.|+|
T Consensus 260 VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~ 339 (449)
T KOG1304|consen 260 VLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQF 339 (449)
T ss_pred EEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhh
Confidence 999999999999999 99999999999999999999999999999999999999
Q ss_pred --------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCC---C
Q 015927 312 --------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGI---A 362 (398)
Q Consensus 312 --------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~---~ 362 (398)
.|..+++++..+|..+|+++.+++++|+++++.+.+++|++++++..++. .
T Consensus 340 yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~ 419 (449)
T KOG1304|consen 340 YVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGR 419 (449)
T ss_pred hhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCc
Confidence 79999999999999999999999999999999999999999999976543 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 015927 363 TKNDRLASWLMISLAVSSSTVAVSSDIYSI 392 (398)
Q Consensus 363 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~ 392 (398)
.+|+.+.+.+++++|++.++.|||+++.++
T Consensus 420 ~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 420 FMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 468999999999999999999999999764
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=356.84 Aligned_cols=344 Identities=22% Similarity=0.354 Sum_probs=287.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHH
Q 015927 34 HEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS------KSATYSGV 107 (398)
Q Consensus 34 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~------~~~~y~~l 107 (398)
...++|+.|+++++++.++.++|.|+|+||+++++.||+.|+++++..++++.||..+|.+|.+.+ +.++|.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 345677899999999999999999999999999999999999999999999999999999998754 34569999
Q ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccc
Q 015927 108 VADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISF 187 (398)
Q Consensus 108 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 187 (398)
++++||+++++++..++.+.++|.|+.|.+..+|++...++....+.. ..+ .+.+ .++..++.+|+++.
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---------~l~-~~~f-~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN---------SLD-KQYF-IIIFGLIVLPLSQL 179 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------ccc-ceeh-hhhHHHHHHHHHHC
Confidence 999999999999999999999999999999999999877764322210 112 2222 33455699999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhh
Q 015927 188 RRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSIS--MPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (398)
Q Consensus 188 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 265 (398)
||++.++++|..+.+.+..+..+..... ..++... ..+..+... +....+++++++.|+|++|..+|+++.+
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g---~~~g~~~~~~~~~~~~~~---~~~~~f~a~g~iaFaf~gH~v~peIq~t 253 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLG---IADGVGFCAPSGGYLDLG---TIPTVFTALGIIAFAYGGHAVLPEIQHT 253 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHh---hccccccCCcccCcccCC---CCcchhhhhhheeeeecCCeeeeehHhh
Confidence 9999999999999876666665544332 2233111 111111111 1111179999999999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcc--h--------------------------------
Q 015927 266 LKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANF--D-------------------------------- 311 (398)
Q Consensus 266 m~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~--~-------------------------------- 311 (398)
||+|++++|++..++.+++++|+..++.||++|||+++++++.|+ |
T Consensus 254 Mk~p~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 254 MKSPPKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred cCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 999999999999999999999999999999999999999999999 4
Q ss_pred -------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCchhhHHHHHH
Q 015927 312 -------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWL 372 (398)
Q Consensus 312 -------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~ 372 (398)
.|+.+++.+.++|..+|.|+++++++|+.....+++++|+++|++.+|.++...+.+.++.
T Consensus 334 ~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~ 413 (437)
T KOG1303|consen 334 LIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWV 413 (437)
T ss_pred HhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6889999999999999999999999999999999999999999998776555556677777
Q ss_pred H-HHHHHHHHHHhhHHHHHHhhc
Q 015927 373 M-ISLAVSSSTVAVSSDIYSIFN 394 (398)
Q Consensus 373 ~-~~~g~~~~~~~~~~~i~~~~~ 394 (398)
+ +++|+++.+.....++++++.
T Consensus 414 ~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 414 IILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhh
Confidence 7 789999999988888888765
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.5e-46 Score=365.71 Aligned_cols=335 Identities=29% Similarity=0.538 Sum_probs=278.7
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHcCh
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SKSATYSGVVADAFGG 114 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~----~~~~~y~~l~~~~~G~ 114 (398)
+|.|+++++++++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.++... ++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999874 5899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
++++++++++.++++|.+++|++..+|.++++++....+ .. ..+.. +.++..++++|++++|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----------~~-~~~~~-~~~i~~~i~~pls~~~~l~~l~ 148 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----------LF-ISRYV-WIIIFALIVLPLSFLKNLKSLR 148 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----------cc-ccccc-cccccccccccccccchhhHHH
Confidence 999999999999999999999999999998776542111 11 12222 3334567999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc--ccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCccch
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP--EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQI 272 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~ 272 (398)
+++.++.+ ++++.+... .+.........++..+ +.....++.++++++|+++|||.+|+++|++++|||+|+|+
T Consensus 149 ~~s~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 149 YLSILGLF-SIFYFIVIV---VIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred HHhhhhhh-ccceeeeee---cceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 99999984 333311111 1111111111111111 11123456789999999999999999999999999999977
Q ss_pred h---HHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch--------------------------------------
Q 015927 273 K---SIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD-------------------------------------- 311 (398)
Q Consensus 273 ~---~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~-------------------------------------- 311 (398)
+ ++...++.+++++|..+|+.||++||+++++|++.|++
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~ 304 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFK 304 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheec
Confidence 7 99999999999999999999999999999999999998
Q ss_pred ---------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCchhhH---
Q 015927 312 ---------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDR--- 367 (398)
Q Consensus 312 ---------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~--- 367 (398)
.|+.+...++++|..+|+++++++++|++++..++|++|+++|+|.+++++.++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~ 384 (409)
T PF01490_consen 305 RAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWI 384 (409)
T ss_pred cccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeeh
Confidence 67789999999999999999999999999999999999999999987765433322
Q ss_pred --HHHHHHHHHHHHHHHHhhHHHH
Q 015927 368 --LASWLMISLAVSSSTVAVSSDI 389 (398)
Q Consensus 368 --~~~~~~~~~g~~~~~~~~~~~i 389 (398)
...+..+++|+++++.|+|+++
T Consensus 385 ~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 385 LSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhccceEEEEEeeehhHHhHHHHc
Confidence 4578889999999999999875
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.3e-42 Score=333.78 Aligned_cols=338 Identities=13% Similarity=0.087 Sum_probs=266.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC--C-------
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA----SK--S------- 101 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~----~~--~------- 101 (398)
....++++..++++++.+..+|.|+|+||++|++.||++|++.+++.++++.||.+++.++..+ ++ .
T Consensus 40 ~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~ 119 (473)
T PLN03074 40 SLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHV 119 (473)
T ss_pred ecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHH
Confidence 4455789999999999999999999999999999999999999999999999999999886432 21 1
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHh
Q 015927 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVF 181 (398)
Q Consensus 102 ~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (398)
.+|.|+++..+||+++.+..+...+++++.|+.|.+..++.+..+. ...+.+.+.+. ...+.
T Consensus 120 ~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~----------------~~~~~~~~~~i--~~~v~ 181 (473)
T PLN03074 120 IQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN----------------DNLDKRTWTYI--FGACC 181 (473)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC----------------CCcCCCeEEee--hHHHH
Confidence 2578999999999999999999999999999999998887663321 01122332222 23477
Q ss_pred hccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhH
Q 015927 182 LPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHP 261 (398)
Q Consensus 182 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 261 (398)
.|++++|++++++++|.+++..++...+.+.. ... .++..+ ..+. +...++..++.++++++|+|++|..+|+
T Consensus 182 ~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i-~~i--~~~~~~---~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~ 254 (473)
T PLN03074 182 ATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTI-AAL--SHGQVE---GVKH-SGPTKLVLYFTGATNILYTFGGHAVTVE 254 (473)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH-HHH--hhcCCC---CCCC-CCchhHHHHHHHHHHHHHHhcccccHHH
Confidence 77888999999999999998533332222211 111 111111 1111 1124566777888899999999999999
Q ss_pred HHhhcCCccchhHHHHHHHHHHHHHHHHHHhHHhhhcCCCch--hhhhhcch----------------------------
Q 015927 262 IENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTL--DDVLANFD---------------------------- 311 (398)
Q Consensus 262 i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~--~~il~~~~---------------------------- 311 (398)
++++||||+|++++...+....+..|+.+++.||+.|||++. ++.+.|+|
T Consensus 255 I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~ 334 (473)
T PLN03074 255 IMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLY 334 (473)
T ss_pred HHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999865 34555554
Q ss_pred --------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCC----------
Q 015927 312 --------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGI---------- 361 (398)
Q Consensus 312 --------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~---------- 361 (398)
.|+.+++.++++|..+|+|+++++++||++++.+++++|+++|++.++++
T Consensus 335 ~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~ 414 (473)
T PLN03074 335 FVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKP 414 (473)
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCC
Confidence 58889999999999999999999999999999999999999999854432
Q ss_pred ---Cchh--hHHHHHHHHHH-HHHHHHHhhHHHHHHhhccCC
Q 015927 362 ---ATKN--DRLASWLMISL-AVSSSTVAVSSDIYSIFNGVG 397 (398)
Q Consensus 362 ---~~~~--~~~~~~~~~~~-g~~~~~~~~~~~i~~~~~~~~ 397 (398)
.++| ..+.++.++++ |++..+.|+|+++.+++++.+
T Consensus 415 ~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 415 PFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred cccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 2222 35788888875 666578999999999998754
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-42 Score=327.03 Aligned_cols=348 Identities=36% Similarity=0.601 Sum_probs=291.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (398)
.+++.|...+++++.|+++|+|++++|++|+..|.+.|++++.++++++.++.+++.++..+.+..+|+++++..+|+.+
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLG 81 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhh
Q 015927 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYT 196 (398)
Q Consensus 117 ~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 196 (398)
+....+.......| +++|+++++|.++..... ...+++.+.+ |..|+..+.+..+.++.|+++.|+++.+++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-----~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-----LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhh-----cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 66666666666666 699999999999744321 1223333333 4567665666778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc--chhH
Q 015927 197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT--QIKS 274 (398)
Q Consensus 197 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~--~~~~ 274 (398)
|.+++. +..+.++.+ .++........++..+...+...+.+.+.++|+++|+|.||+|+.|+++|||+|+ |+++
T Consensus 155 S~~s~~-~~~~fv~~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 155 SALSLA-SVVYFVVLV---VYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHH-HHHHHHHHH---HHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 999984 444443332 3444332221122222222223346889999999999999999999999999999 6999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch-------------------------------------------
Q 015927 275 IVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD------------------------------------------- 311 (398)
Q Consensus 275 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~------------------------------------------- 311 (398)
+...+...+..+|..+|.+||+.|||++.+|++.+++
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 9999999999999999999999999999999999887
Q ss_pred ----------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCchhhHHHHHHHHH
Q 015927 312 ----------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKNDRLASWLMIS 375 (398)
Q Consensus 312 ----------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~ 375 (398)
++..+.....+.|++.|+++++.+++||+++..++|++|+++|+|.+|+ +.+++.+.++...
T Consensus 311 ~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~ 388 (411)
T KOG1305|consen 311 PYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLI 388 (411)
T ss_pred ccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHH
Confidence 6677888889999999999999999999999999999999999998777 6788999999999
Q ss_pred HHHHHHHHhhHHHHHHhhccCC
Q 015927 376 LAVSSSTVAVSSDIYSIFNGVG 397 (398)
Q Consensus 376 ~g~~~~~~~~~~~i~~~~~~~~ 397 (398)
+++...+.|+...+.++..+..
T Consensus 389 ~~~~~~i~~~~~~i~~~~~~~~ 410 (411)
T KOG1305|consen 389 LGVLLSIIGVAVMIYDLLAKNA 410 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999887754
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-37 Score=273.07 Aligned_cols=339 Identities=15% Similarity=0.204 Sum_probs=285.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCCHHH
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK--------SATYSG 106 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~--------~~~y~~ 106 (398)
.+.+.+.+.+|+.-+..|.+=|.=+++||++....||+ ++..++.++..++||+.+|++|...++ +++|..
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 34457899999999999999999999999999999987 999999999999999999999987543 789999
Q ss_pred HHHHHcChhH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccc
Q 015927 107 VVADAFGGAG-RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI 185 (398)
Q Consensus 107 l~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 185 (398)
++...++|.. ++.+.+.+.+.+...|+.|.++.+|.+.+-+|+- ..+++.+ .+++...++|+.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~--------------svd~~sW--m~i~~a~LLpc~ 253 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL--------------SVDKASW--MMITSASLLPCS 253 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC--------------Cccccch--hhhhhHHHhhhH
Confidence 9999776655 4899999999999999999999999997766531 1123333 334556899999
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhh
Q 015927 186 SFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (398)
Q Consensus 186 ~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 265 (398)
++|+++..+.+|.+..+.-+++-++.+.++..+. +++.+. ++.-..+..++..++|+++|+|..|..+|.+...
T Consensus 254 FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~--~dW~ws----kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 254 FLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV--SDWSWS----KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccce----eEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 9998888777777766544444444444433321 222222 2222234455677899999999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch----------------------------------
Q 015927 266 LKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD---------------------------------- 311 (398)
Q Consensus 266 m~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~---------------------------------- 311 (398)
|++|++++-++.++-+...++-..+|..||++|++.+++.|++|+|
T Consensus 328 M~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~n 407 (524)
T KOG4303|consen 328 MKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENN 407 (524)
T ss_pred cCChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998
Q ss_pred --------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCchh
Q 015927 312 --------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATKN 365 (398)
Q Consensus 312 --------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~~ 365 (398)
.|.++++.+.+.|+++|.|..+++++|++++..++|+.|++||++++++.....
T Consensus 408 lF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~ 487 (524)
T KOG4303|consen 408 LFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNF 487 (524)
T ss_pred hhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhH
Confidence 799999999999999999999999999999999999999999999998887788
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 015927 366 DRLASWLMISLAVSSSTVAVSSDIYSIFNGV 396 (398)
Q Consensus 366 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~ 396 (398)
++.....++++|..+.+.|.|.+..++++..
T Consensus 488 e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 488 EKRFDQGIIIMGCSVCVSGVYFSSMELIRAI 518 (524)
T ss_pred HHhhheeEEEEeeeEEEEeEehhhHHHHHHH
Confidence 8889999999999999999999999888753
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=257.95 Aligned_cols=336 Identities=21% Similarity=0.264 Sum_probs=263.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA--TYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~--~y~~l~~~~~G 113 (398)
+.+++.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+.. ++.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 4567889999999999999999999999999999999999999999999999999999999988655 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|+++++.++.+.+.+++.+.+|.+..++.+++.+++ .++.+. ..|.....+++ .++.++++.++...+
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~----------~~~~~~-~~r~~~~lif~-~~~~~l~~~~~~~~l 151 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGN----------QFGLNP-LPRKLGSLIFA-LVLAFLSWLGTLAVL 151 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHh----------hcccCC-cchHHHHHHHH-HHHHHHHHhchhHHH
Confidence 999999999999999999999999999999766543 111111 23555555444 466779999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-c-
Q 015927 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q- 271 (398)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~- 271 (398)
+..+.+... .+.+.++.. .+..-+.+.+.-..+|... ...+.++..++|+++|||+||+++|++.+|||+++ +
T Consensus 152 k~ts~l~~~-~v~~~~~l~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~ 226 (415)
T COG0814 152 KITSLLVFG-KVIYLVLLV---VYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKA 226 (415)
T ss_pred HHHHHHHHH-HHHHHHHHH---HHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHH
Confidence 999998873 343333322 2222111111111122111 24566788999999999999999999999999888 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch----------------------------------------
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD---------------------------------------- 311 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~---------------------------------------- 311 (398)
.+|+...+..+..++|..++.++|..+|+++++|++++.+
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg 306 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLG 306 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhh
Confidence 9999999999999999999999999999999999999887
Q ss_pred ----------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCc
Q 015927 312 ----------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIAT 363 (398)
Q Consensus 312 ----------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~ 363 (398)
.....+..+..++...+..+.+++.+|+.....+.++.|...+.|....+..
T Consensus 307 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 307 LFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 2223344445666677777888888888888888888888888775443322
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHH
Q 015927 364 KNDRLASWLMISLAVSSSTVAVSSD 388 (398)
Q Consensus 364 ~~~~~~~~~~~~~g~~~~~~~~~~~ 388 (398)
+.++.....++++|++.+....++.
T Consensus 387 ~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 387 GGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3223578888999998887776654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=7.1e-23 Score=196.01 Aligned_cols=322 Identities=18% Similarity=0.249 Sum_probs=221.8
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGR 117 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~ 117 (398)
++.+.+++++.+.++++|+|+|+||.+.+..|+.++.+.+++++.++++|.+++.|...++ +..++.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 4578899999999999999999999999999999999999999999999999999998776 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc--ccccchhhh
Q 015927 118 ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRY 195 (398)
Q Consensus 118 ~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~ 195 (398)
++..+...+..++.+.+|..-.++.+++.+++. .+.+ .. +.....+.. ++...+.. .|-+++.+.
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~----------~~~~-~~-~~~~~~~f~-~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQ----------LGTD-LS-PWLSSLLFT-IIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHh----------cCCC-Cc-HHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999987665431 1000 11 111111111 12222211 222333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCc-cchhH
Q 015927 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-TQIKS 274 (398)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~-~~~~~ 274 (398)
......+.++..+ .. .... ..+.+......+...++.....++|+.++||+.|+.+|++.+.+++. +|.+|
T Consensus 148 ~lv~~~i~~~~~l---~~----~~~p-~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ 219 (394)
T PF03222_consen 148 VLVFGMIISFIIL---VV----YLIP-HWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRK 219 (394)
T ss_pred HHHHHHHHHHHHH---HH----HHhh-hcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHH
Confidence 3333331111111 11 1111 11111111111122456677899999999999999999999999944 59999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhc-----------CCCchh--hhhhcch------------------------------
Q 015927 275 IVRTSITLCSTVYITTSFFGLLLF-----------GDRTLD--DVLANFD------------------------------ 311 (398)
Q Consensus 275 ~~~~~~~~~~~~Y~~~g~~gy~~f-----------g~~~~~--~il~~~~------------------------------ 311 (398)
++..+..+..++|+.+-...-..- +++..+ ..+.+..
T Consensus 220 ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d 299 (394)
T PF03222_consen 220 AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFD 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999755443311 111111 1111110
Q ss_pred -----------------hHHHHHHHHHHHHhccC-CHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCCch-----hhHH
Q 015927 312 -----------------VTAALMGFIFVGANFVP-SIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIATK-----NDRL 368 (398)
Q Consensus 312 -----------------~~~~~~~~~~~~a~~~p-~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~~~-----~~~~ 368 (398)
...+..+++.++|...| .|...+++.| ....++..++|.++.+|.|+++.++ ..+.
T Consensus 300 ~l~d~~k~~~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~ 378 (394)
T PF03222_consen 300 FLADLFKLKNNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNF 378 (394)
T ss_pred HHHHHHcCCccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHH
Confidence 34456666788888888 5689999999 8888999999999999977553322 2455
Q ss_pred HHHHHHHHHHHHHH
Q 015927 369 ASWLMISLAVSSST 382 (398)
Q Consensus 369 ~~~~~~~~g~~~~~ 382 (398)
....++++|++..+
T Consensus 379 ~l~~~~~~~i~iii 392 (394)
T PF03222_consen 379 TLLLVIIFGILIII 392 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666543
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.92 E-value=8.6e-23 Score=193.63 Aligned_cols=327 Identities=13% Similarity=0.135 Sum_probs=228.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
.++++.+...+.+.+.++++|+|||++|.+.++.|+.++.+++++++.++.||+.++.|...+. +..++.+++++.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 3577899999999999999999999999999999999999999999999999999999998764 788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc--ccccch
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDS 192 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~ 192 (398)
+|+.+..++..+..++.+.+|+.-.++.+++.+++. + .++ .++.-.. ...++...+.+ .|..++
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~-~~i-----------~~~~~~l-lF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S-LNV-----------PARAAGF-GFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C-CCC-----------cHHHHHH-HHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999999999987665420 0 000 1111111 11112222222 344445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc-ccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCc-c
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP-EISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-T 270 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~-~ 270 (398)
.+..-..+.+.+.+..+. .... +.+.+.... ..++...+.....++|++++||+.|+++|++.+.++++ +
T Consensus 152 ~n~~l~~~~i~~f~~~~~-------~l~~-~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~ 223 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFG-------SLLG-HVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK 223 (414)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHh-hcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHH
Confidence 555444444222111111 1111 111111110 01111224457789999999999999999999998854 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHhhhcC-----------CCchhhhhhcch----------------------------
Q 015927 271 QIKSIVRTSITLCSTVYITTSFFGLLLFG-----------DRTLDDVLANFD---------------------------- 311 (398)
Q Consensus 271 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg-----------~~~~~~il~~~~---------------------------- 311 (398)
|.+|+...+..+..++|+.+-......-+ ++. +..+..+.
T Consensus 224 kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~ 302 (414)
T PRK10483 224 TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVT 302 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997666555432 111 11111100
Q ss_pred ----------------------hHHHHHHHHHHHHhccCC-HHHHHHhhhhhhhhHHHHHhhhHHHhhhcCC-CCc----
Q 015927 312 ----------------------VTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHG-IAT---- 363 (398)
Q Consensus 312 ----------------------~~~~~~~~~~~~a~~~p~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~-~~~---- 363 (398)
...+.++++.++|.+.|+ |-..+++.|.. ..++.-++|.++.+|.||+ ..+
T Consensus 303 LGL~d~l~D~~k~~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v 381 (414)
T PRK10483 303 LGLFDYLADLFGFDDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRV 381 (414)
T ss_pred HHHHHHHHHHhCCCCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 344677888999999995 78899999977 5577789999999998765 211
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhH
Q 015927 364 KNDRLASWLMISLAVSSSTVAVS 386 (398)
Q Consensus 364 ~~~~~~~~~~~~~g~~~~~~~~~ 386 (398)
...+.....++++|+...+.-..
T Consensus 382 ~Gg~~~l~~~~~~g~~~i~~~i~ 404 (414)
T PRK10483 382 WGGKPMIVLILLFGVGNALVHIL 404 (414)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 12445556677777776655543
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.92 E-value=2.6e-22 Score=190.15 Aligned_cols=327 Identities=13% Similarity=0.110 Sum_probs=224.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhH
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAG 116 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~ 116 (398)
+||.+.+.+...+.++++|+|+|++|.+.++.|+.++.+++++++.++.||+.++.|+..+. +..++.+++++.+||+|
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 34458888999999999999999999999999999999999999999999999999998766 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc--ccccchhh
Q 015927 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLR 194 (398)
Q Consensus 117 ~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~ 194 (398)
+++..+...+..++.+.+|+.-.++.+++.+++ +.+.+ ..+... .+...++..++.+ .|..++.+
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~----------~~~~~--i~~~~~-~llF~~~~~~~v~~gt~~vd~~n 152 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISM----------NLGYH--ANPRIV-GICTAIFVASVLWISSLAASRIT 152 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhh----------hccCC--CcHHHH-HHHHHHHHHHHHHhchhHHHHHH
Confidence 999999999999999999999999999766532 11100 011111 1112223333322 23344444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc--cccccc-hhhhhhhhhhhhhhhhhhcccchhHHHhhcCCc-c
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLL--PEISKQ-ASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-T 270 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~-~ 270 (398)
..-..+.+.+.+..+ . .. . .+.+.+... +..... .....+..++|++++||+.|+++|++.+.++++ +
T Consensus 153 r~l~~~~ii~f~~~~--~--~l---~-~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~ 224 (415)
T PRK09664 153 SLFLGLKIISFVIVF--G--SF---F-FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKD 224 (415)
T ss_pred HHHHHHHHHHHHHHH--H--HH---h-hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHH
Confidence 444433321111111 1 11 0 011111111 100100 113346779999999999999999999998855 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHhhh-----------cCCCchhhhh---hcch-------------------------
Q 015927 271 QIKSIVRTSITLCSTVYITTSFFGLLL-----------FGDRTLDDVL---ANFD------------------------- 311 (398)
Q Consensus 271 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~-----------fg~~~~~~il---~~~~------------------------- 311 (398)
|.+|+...+..+..++|+.+=.+.... .|++..+.+. .+..
T Consensus 225 ~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~L 304 (415)
T PRK09664 225 KLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTL 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998865443331 2222222111 0100
Q ss_pred ---------------------hHHHHHHHHHHHHhccCC-HHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCC-----ch
Q 015927 312 ---------------------VTAALMGFIFVGANFVPS-IWDAFQFTGATAAVSVGFIFPAAIALRDTHGIA-----TK 364 (398)
Q Consensus 312 ---------------------~~~~~~~~~~~~a~~~p~-~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~-----~~ 364 (398)
...+.++++.+++.+.|+ |-..+++.|.. ..++.-++|.++-+|.||+.. -.
T Consensus 305 GL~D~l~D~~~~~~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~ 383 (415)
T PRK09664 305 GLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVW 383 (415)
T ss_pred HHHHHHHHHhCCCCccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceee
Confidence 345677888999999995 79999999996 557888999999999876521 12
Q ss_pred hhHHHHHHHHHHHHHHHHHhhH
Q 015927 365 NDRLASWLMISLAVSSSTVAVS 386 (398)
Q Consensus 365 ~~~~~~~~~~~~g~~~~~~~~~ 386 (398)
..+......+++|++..++-..
T Consensus 384 GG~~~l~~~~~~g~~ii~~~~~ 405 (415)
T PRK09664 384 GGNLIPAIVILFGITVILCWFG 405 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888877765443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.91 E-value=1e-21 Score=187.15 Aligned_cols=321 Identities=16% Similarity=0.193 Sum_probs=223.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHH
Q 015927 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALL 120 (398)
Q Consensus 42 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~i~ 120 (398)
+...+.+.+.++++|+|+|+||.+.+..|++++++++++++.++.|+.+++.|+..++ +..++.+++++.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999987665 568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccc-cccccchhhhhhHH
Q 015927 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI-SFRRVDSLRYTSAL 199 (398)
Q Consensus 121 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~-~~~~l~~l~~~s~~ 199 (398)
.+...+..+..+.+|..-.++.+.+.++ ++++.+. +... ...+.+.+...-+. -.|..++.+..-..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~----------~~~~~~i-~~~~-~~l~F~~~~~~iv~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSIS----------DWTGISM-SPTA-GVLLFTLVAGGVVCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHH----------HhccCCC-ChHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999998888755442 2222111 1111 11111111111111 12334444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCc-cchhHHHHH
Q 015927 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDP-TQIKSIVRT 278 (398)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~-~~~~~~~~~ 278 (398)
..+.+.+ ...... .. +.+.+.... .+ + +...+..++|++++||+.|+++|++.+.+++. +|.+|+...
T Consensus 152 ~~ii~~~---~~~~~l----~p-~~~~~~L~~-~~-~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 152 AKIIFLV---VMLALM----MP-HIHKVNLLT-LP-L-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHHHHHH---HHHHHH----HH-hcCHHHHhc-CC-c-cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 3322211 111111 11 111111110 00 0 01137889999999999999999999999855 499999999
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCch----------hhhhhcch-------------------------------------
Q 015927 279 SITLCSTVYITTSFFGLLLFGDRTL----------DDVLANFD------------------------------------- 311 (398)
Q Consensus 279 ~~~~~~~~Y~~~g~~gy~~fg~~~~----------~~il~~~~------------------------------------- 311 (398)
+..+..++|+.+-......-+.+.- ++++..+.
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998777766543311 12222111
Q ss_pred -------------hHHHHHHHHHHHHhccC-CHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCC-C-chh---hHHHHHH
Q 015927 312 -------------VTAALMGFIFVGANFVP-SIWDAFQFTGATAAVSVGFIFPAAIALRDTHGI-A-TKN---DRLASWL 372 (398)
Q Consensus 312 -------------~~~~~~~~~~~~a~~~p-~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~-~-~~~---~~~~~~~ 372 (398)
...+.++++.++|...| .|..+.++.|. ....+.+++|.++.+|.|+++ . +.+ .+...+.
T Consensus 301 ~~~~~~~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~ 379 (403)
T PRK15132 301 LFQRRNTVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALAL 379 (403)
T ss_pred HHccCccccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHH
Confidence 24567788889999998 55778888886 467888999999999977543 1 222 5677888
Q ss_pred HHHHHHHHHHHhhH
Q 015927 373 MISLAVSSSTVAVS 386 (398)
Q Consensus 373 ~~~~g~~~~~~~~~ 386 (398)
++++|++..+.-..
T Consensus 380 v~~~G~~~i~~~~~ 393 (403)
T PRK15132 380 VFLCGIAVIGIQFL 393 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887765543
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.89 E-value=2.9e-21 Score=186.10 Aligned_cols=294 Identities=17% Similarity=0.239 Sum_probs=206.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHHHHHHH
Q 015927 47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALLQVCIV 125 (398)
Q Consensus 47 ~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~i~~~~~~ 125 (398)
+...+++++|+|++++|..+++.|+.++++.+++.+..+.++..++.|...+. +..++.+++++.+||+++++......
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999998776 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHHHHHHHH
Q 015927 126 VNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (398)
Q Consensus 126 ~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (398)
+.++..+.+|....++.+...+++ +.+.. . .+.... +...+++.+ ...+..+...+++.+.+...+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~----------~~~~~-~-~~~~~~-~~~~~v~~~-l~~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGE----------YFGFP-W-SARAIV-LIFTVLFGS-FVWLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHH----------hcCCC-c-cHHHHH-HHHHHHHHH-HHHhchhHHHHHHHHHHHHHH
Confidence 999999999999988887655431 11111 1 122222 222223333 334455666666665553322
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcC-CccchhHHHHHHHHHHH
Q 015927 206 VFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK-DPTQIKSIVRTSITLCS 284 (398)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~~~~~~~~~~~~~~~~~ 284 (398)
...++.+.... . + .+.++..|.......+.++..+++...++|++|.+++++.+|++ +++|.+|+...+..++.
T Consensus 149 ~~l~~~ii~~~-~--~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~ 223 (381)
T TIGR00837 149 IAFALVFSGLL-P--H--VKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIAL 223 (381)
T ss_pred HHHHHHHHHHH-h--h--ccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 22221111111 1 1 11111112101012345678899999999999999999999997 55589999999999999
Q ss_pred HHHHHHHhHHhhhcCCCch----------hh---hhhc-ch---------------------------------------
Q 015927 285 TVYITTSFFGLLLFGDRTL----------DD---VLAN-FD--------------------------------------- 311 (398)
Q Consensus 285 ~~Y~~~g~~gy~~fg~~~~----------~~---il~~-~~--------------------------------------- 311 (398)
++|+.+........+.+.- ++ ...+ ..
T Consensus 224 ~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 224 VLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999987776665532211 11 1111 10
Q ss_pred -------hHHHHHHHHHHHHhccCCHH-HHHHhhhhhhhhHHHHHhhhHHHhhhcCC
Q 015927 312 -------VTAALMGFIFVGANFVPSIW-DAFQFTGATAAVSVGFIFPAAIALRDTHG 360 (398)
Q Consensus 312 -------~~~~~~~~~~~~a~~~p~~~-~i~~~~G~~~~~~~~~i~P~l~~l~~~~~ 360 (398)
...+..+++.++|.+.|+.. ..++..| +...++.+++|+++++|.||+
T Consensus 304 ~~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 304 SKKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred ccCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34456677788898998655 8999999 888899999999999997764
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.84 E-value=4.6e-18 Score=161.45 Aligned_cols=323 Identities=17% Similarity=0.198 Sum_probs=215.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHHHHH
Q 015927 47 VFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQVCI 124 (398)
Q Consensus 47 ~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~i~~~~~ 124 (398)
...+.++.+|+|+|+||......|+++.++.+++++.+++++.+.+.|..... +..++.+++++.+||+++.+..++.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999987654 5689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc--ccccchhhhhhHHHHH
Q 015927 125 VVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRYTSALSVG 202 (398)
Q Consensus 125 ~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s~~~~~ 202 (398)
++..+..+.+|...+.+.+++.+.+. ++.... .|.....++.. ++..+.. -|-+.+....-....+
T Consensus 105 ff~ly~ll~aY~~~itn~l~sfl~~q----------l~~~~~-~r~l~slifv~-~l~~iv~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 105 FFAICPLLWIYGVTITNTFMTFWENQ----------LGFAPL-NRGFVALFLLL-LMAFVIWFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------cCcCCc-cHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999988777765433221 111011 23332222222 2333222 2223333333333332
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCCCCc--cccccccchhhhhhhhhhhhhhhhhhcccchhHHHhh----cC-----C--
Q 015927 203 LAIVFVVITAGVAIVKTIDG-SISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENE----LK-----D-- 268 (398)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~-- 268 (398)
++++.+. ......++. .....+ ..|+............++|++++||+.|+++|+.... .+ +
T Consensus 173 ~~l~~l~----~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a 248 (443)
T PRK13629 173 ASLVLIS----LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFT 248 (443)
T ss_pred HHHHHHH----HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchH
Confidence 1111111 111111111 010000 0011111111234778899999999999999998877 53 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHhhhcCCCc-------hh-------hhhhc-------c-h---------------
Q 015927 269 PTQIKSIVRTSITLCSTVYITTSFFGLLLFGDRT-------LD-------DVLAN-------F-D--------------- 311 (398)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-------~~-------~il~~-------~-~--------------- 311 (398)
++|.+|++..+..+..++|+.+-..+-..-+++. +. |.+.+ + +
T Consensus 249 ~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~ 328 (443)
T PRK13629 249 ERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIF 328 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHH
Confidence 3488999999999999999999888777654321 01 11122 1 2
Q ss_pred --------------------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHH
Q 015927 312 --------------------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAI 353 (398)
Q Consensus 312 --------------------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~ 353 (398)
....+++.++.++..-|++.++++-.|+-....+.|++|...
T Consensus 329 TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~ 408 (443)
T PRK13629 329 KSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYA 408 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334566677888889999999999777777778889999999
Q ss_pred HhhhcCCCCchhhHHHHHHHHHHHHHHHHHhhH
Q 015927 354 ALRDTHGIATKNDRLASWLMISLAVSSSTVAVS 386 (398)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 386 (398)
-+|.-.-+ +-+.+..++.+.+.|++......|
T Consensus 409 i~kvp~l~-~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 409 IRKAPSLA-KYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHccHHHH-HhCCCchhHHHHHHHHHHHHHHHH
Confidence 88843211 112234578888888887655444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.80 E-value=1.8e-17 Score=158.57 Aligned_cols=294 Identities=19% Similarity=0.198 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHcChhHHHHHH
Q 015927 44 SGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVADAFGGAGRALLQ 121 (398)
Q Consensus 44 ~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~--~~~~y~~l~~~~~G~~~~~i~~ 121 (398)
..-.+.+.++++|+|+|++|...++.||+..++..++...+++++.+++.|..... +..++.|++++.|||+++.+..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~ 85 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILIT 85 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999885433 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHHHH
Q 015927 122 VCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSV 201 (398)
Q Consensus 122 ~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 201 (398)
+..++..+..+.+|.....+.+.+.+.+ ....+ ...+.... ...+++.-.......+.+.+++.+-+
T Consensus 86 ~lY~~~~~~i~~aY~~~~~~~~~~fl~~----------~~~~~--~p~~~i~~-lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 86 LLYFFAIYPILLIYSVAITNDSASFLVN----------QLGTA--PPLRGLLS-LALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCC--CcHHHHHH-HHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999999999999998888877544432 11111 11121112 11222222233334455555554444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcc--ccccccchhhhhhhhhhhhhhhhhhcccchhHHH----hhcCC----ccc
Q 015927 202 GLAIVFVVITAGVAIVKTIDGSISMPCL--LPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE----NELKD----PTQ 271 (398)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~~----~~~ 271 (398)
...++......... ... .+.+.. .|... ..+.++..++|..++||.+|+++|+.. ++.+| ++|
T Consensus 153 ~~~ii~l~~l~~~l-ip~----~~~~~L~~~p~~~--~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 153 FPLVLILVLLSLYL-IPH----WNGANLTTFPSFN--GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHHHHHHHHHHHHH-HHH----cCHHHHhcCCccc--chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 22222121111111 111 111111 12111 245678899999999999999999997 44442 348
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhh-hcch---------------------------------------
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVL-ANFD--------------------------------------- 311 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il-~~~~--------------------------------------- 311 (398)
.+|+...+..+..++|+.+-.......+.+.-.... +|.+
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 899999999999999999988888877644321111 1111
Q ss_pred -------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhh
Q 015927 312 -------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRD 357 (398)
Q Consensus 312 -------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~ 357 (398)
...++.+.+..++..-|++.++++-.|+-....+.|++|...-+|.
T Consensus 306 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 306 GLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 3345666778888899999999996666666688899999998884
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.57 E-value=1.1e-12 Score=125.62 Aligned_cols=239 Identities=18% Similarity=0.276 Sum_probs=165.9
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRA 118 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (398)
++.|.+|..+.+.++++|+|++.+|....+.+--.+++..++.+.+......++.+...+++.++..+..++.+||+.++
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 36789999999999999999999999988766667888889999999999999999998887789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhH
Q 015927 119 LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSA 198 (398)
Q Consensus 119 i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 198 (398)
+......++....+.......++.++.. .-++ + ...... ...+++.-....+.++...+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~~--t-p~~~~~-l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTY--------------LLPR--T-PIIVII-ILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcCC--C-CHHHHH-HHHHHHHHHHHHccHHHHHHHHH
Confidence 9998888887777666666666665221 1111 1 111222 22222222233455666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhh-hhhhhhhhcccchhHHHhhcCCccchhHHHH
Q 015927 199 LSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTF-PVLVTAYICHHNIHPIENELKDPTQIKSIVR 277 (398)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~ 277 (398)
+.+...++..+ ....... ....+..+..|-.+ .+..+...+. +...++|.+...+....+++|||+|.+|+..
T Consensus 143 i~~~~~i~~~~--~il~~~~--~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 143 ILLIIFLILFI--LVLILLA--PKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHHHHHHHH--HHHHHHh--cccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHH
Confidence 55432222100 1111111 11122233334332 2344444444 4778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCC
Q 015927 278 TSITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 278 ~~~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
.+..++..+|..+.......+|.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHH
Confidence 999999999999988888888754
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.54 E-value=2.9e-11 Score=118.81 Aligned_cols=241 Identities=14% Similarity=0.111 Sum_probs=146.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
+++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+. +.-......++.+||
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 357789999999999999999999999999888876 567788888888888888888876554 445667778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
+..++......+........+.....+++...++. .. +...........+.+.-....+..+...
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------------~~-~~~~~~~~~~~~l~~~~~ln~~g~~~~~ 146 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------------TL-SPVQICLATIGVLWLCTVANFGGARITG 146 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cc-chHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99888777665554443333333333443222210 00 0011111111111111112223333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chh
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIK 273 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~ 273 (398)
.+..+.....++.+++........ .+.+...+...| +....+.++..++....|+|.|.+......+|+|||+ +.+
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 223 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccccc
Confidence 333333221111111111111111 121111111111 1112235667778889999999999999999999998 799
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 015927 274 SIVRTSITLCSTVYITTSFFGL 295 (398)
Q Consensus 274 ~~~~~~~~~~~~~Y~~~g~~gy 295 (398)
|++..+..+..++|++......
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765544
No 18
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.52 E-value=9.8e-13 Score=125.49 Aligned_cols=314 Identities=13% Similarity=0.132 Sum_probs=202.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRAS--KSATYSGVVAD 110 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G--~~~g~~~l~~~~~l~~~t~~~l~~~~~~~--~~~~y~~l~~~ 110 (398)
.+.+|+.+.+.+++.++++++|+|++..|....+.+ ...+++..+++++++...+.+..|....- ..-+|.-+ .+
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~ 86 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SE 86 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HH
Confidence 356789999999999999999999999999888655 55567788889999999999999987532 34455555 56
Q ss_pred HcChhHHHHHHHHHHHHHHHH-HHHHHHhhccc-cccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccccc
Q 015927 111 AFGGAGRALLQVCIVVNNLGM-LVVYMIIIGDV-LSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (398)
Q Consensus 111 ~~G~~~~~i~~~~~~~~~~g~-~~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (398)
+||+.......-.-.+..... +..+....+++ +++.++.+ +.+....+......+..+-..-+...|
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c-----------~~p~~~~~lla~~~l~~lt~~n~~~V~ 155 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLC-----------DVPRVASKLLAAALLVLLTLINSFSVK 155 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCC-----------CCchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 677776654333333333333 36666677776 65555420 011111222222222222222233344
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcC
Q 015927 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (398)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 267 (398)
.-..++.+....-+++ +.++++..++....+..+..++.+ .+ ...+..++..++-...|||.+-..+-.+.+|+|
T Consensus 156 ~a~~vq~~ft~~Kl~a---l~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEik 231 (479)
T KOG1287|consen 156 WATRVQIVFTIAKLLA---LLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIK 231 (479)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHhchheeEecccccccccc-cccCcCchHHHHHHHHHhhhcccCchhhccchHhhc
Confidence 3344444444444222 222222233444444333222111 22 123455577788888999999999999999999
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHhHHhhhcCCCchhhhhhcch-----------------------------------
Q 015927 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDRTLDDVLANFD----------------------------------- 311 (398)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~----------------------------------- 311 (398)
||+ .++++...++.+++++|+++-+..+..- +.++++.+-.
T Consensus 232 nP~ktLP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs 308 (479)
T KOG1287|consen 232 NPRRTLPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFS 308 (479)
T ss_pred CccccchHHHHHhhHHHHHHHHHhHhheeEec---CHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHH
Confidence 999 7999999999999999999988766543 2232221110
Q ss_pred -----------------------------hHHHHHHHHHHHHhccCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCCC
Q 015927 312 -----------------------------VTAALMGFIFVGANFVPSIWDAFQFTGATAAVSVGFIFPAAIALRDTHGIA 362 (398)
Q Consensus 312 -----------------------------~~~~~~~~~~~~a~~~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~ 362 (398)
..+++.....++..+..|+..++++.+-.......+.+=+++++|.+++..
T Consensus 309 ~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 309 SSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 344555555666677789999999999999999999999999999877665
Q ss_pred chhhH
Q 015927 363 TKNDR 367 (398)
Q Consensus 363 ~~~~~ 367 (398)
+|.-|
T Consensus 389 ~rPiK 393 (479)
T KOG1287|consen 389 PRPIK 393 (479)
T ss_pred CCCEe
Confidence 55433
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.51 E-value=3.8e-11 Score=119.01 Aligned_cols=247 Identities=11% Similarity=0.081 Sum_probs=148.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHcC
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLI-PGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAFG 113 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~-~g~~~l~~~~~l~~~t~~~l~~~~~~~~~--~~y~~l~~~~~G 113 (398)
++|+.+.+++++..+++++|+|++.+|....+.|-. ..++..++.++........+.|...+.++ -...+..++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 467899999999999999999999999998765532 23555667777777777778887766544 447778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|+..++......+........+.....+.+...++. ++.. ......+.....+++.-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~-----------~~~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL-----------FGSG--NPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hcCC--CcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999998888776554444455554444444333221 0000 001111111111122222233444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc--ccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCccc
Q 015927 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEI--SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (398)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 271 (398)
.++..+...+-+..+++.+...... .+++....+..++. .....+..+..++....++|.|........+|+||+++
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc
Confidence 4444443322121111111111111 12111011111110 11123456778888899999999999999999999558
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
.+|++..+..++.++|+.........
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887664443
No 20
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.49 E-value=7.8e-11 Score=116.67 Aligned_cols=246 Identities=11% Similarity=0.108 Sum_probs=145.9
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CHHHHHHHHcChh
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKE-LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS-A-TYSGVVADAFGGA 115 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~-~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~-~-~y~~l~~~~~G~~ 115 (398)
|+.+.++.+...+++++|+|++.+|....+ +|....++..++.++........+.|...+.++ . ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 578899999999999999999999988664 454334556777777778788888888777654 3 5788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhh
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRY 195 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 195 (398)
..++......+........+.....+.+...++. +... .....+......+..+-....+..+....
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPI-----------FGGG--NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------ccCC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9988887766554433444444443333222211 0000 00111111111111122222334444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc----cccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCccc
Q 015927 196 TSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPE----ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQ 271 (398)
Q Consensus 196 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 271 (398)
+..+..+.-++.+++.+...... .+++...++.+++ ......+.++..++....|+|.|.+....+.+|.||+++
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ 226 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSD 226 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCccc
Confidence 43333222111111111111111 1111100110100 011122345667888899999999999999999999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhc
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLLF 298 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~f 298 (398)
.+|+...+...+..+|....+..+...
T Consensus 227 ip~ai~~~~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 227 VGKATVIGLIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999887766544
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.48 E-value=3.5e-10 Score=111.38 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=141.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
++++|+.+.++++...+++++|+|++.+|....+.|.. .+...++.++........+.|..... +.-.....+++.+|
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 35678999999999999999999999999998887642 44555555666666667777776554 33355566899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|+..++......+.......+......+.....++. ...++ ...+....++.++-.......+..
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~ln~~gvk~~ 147 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----------LKDPL----VLTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCcH----HHHHHHHHHHHHHHHHHHhchHHH
Confidence 999988776665543333333332223332211110 00010 111111111111111222233344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-ch
Q 015927 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (398)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~ 272 (398)
..+..+.....++.++........ .++++... ..++ ..+...+..+..++....|+|.|........+|+|||+ +.
T Consensus 148 ~~i~~i~~~~~~i~l~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i 224 (445)
T PRK10644 148 TRVQAVATVLALIPIVGIAVFGWF-WFRGETYM-AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV 224 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCchhcc-CCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccch
Confidence 443333322211111111111111 11211101 1111 11123345666778889999999999999999999998 79
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHhhhc
Q 015927 273 KSIVRTSITLCSTVYITTSFFGLLLF 298 (398)
Q Consensus 273 ~~~~~~~~~~~~~~Y~~~g~~gy~~f 298 (398)
+|++..+..+..++|++..+......
T Consensus 225 Prai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 225 PIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999887744433
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.47 E-value=1.9e-10 Score=112.90 Aligned_cols=243 Identities=13% Similarity=0.057 Sum_probs=146.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
+++|+.+.++.+...+++|+|+|++.+|...++.|-. .+...++.++........+.|...+. +.....+.+++ +||
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 5688999999999999999999999999999988753 56666667777777777777776655 33456667777 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
+..+...............++.....+++...++.. .++. ...... +..+.+.-+...+..+...
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----------~~~~---~~~~~~-~~i~~~~~~ln~~gvk~~~ 144 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----------NDPI---PAGIAC-IAIVWVFTFVNMLGGTWVS 144 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CChH---HHHHHH-HHHHHHHHHHHHHhHHHHH
Confidence 888877765444332223333333344443332210 0000 111111 1111111122333444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chh
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIK 273 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~ 273 (398)
.+..+..++.++.++........+ .+.+...+...+ ....++.++..++....|+|.|.+.+....+|+|||+ +.+
T Consensus 145 ~i~~i~~~~~li~~~~~~i~g~~~-~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iP 221 (435)
T PRK10435 145 RLTTIGLVLVLIPVVGTAIVGWHW-FDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVP 221 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcccccc
Confidence 444443322111111111111111 111000011111 1123466788899999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhc
Q 015927 274 SIVRTSITLCSTVYITTSFFGLLLF 298 (398)
Q Consensus 274 ~~~~~~~~~~~~~Y~~~g~~gy~~f 298 (398)
|++..+...+.++|++.........
T Consensus 222 rAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 222 LATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999877655443
No 23
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.46 E-value=1e-10 Score=116.85 Aligned_cols=248 Identities=15% Similarity=0.151 Sum_probs=141.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHc
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLI-PGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAF 112 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~-~g~~~l~~~~~l~~~t~~~l~~~~~~~~-~~~y~~l~~~~~ 112 (398)
+.+|+.+.++.+...+++++|+|++..|.... .+|-. ..++..++.+++.......+.|...+.+ .-......++.+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~ 118 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVF 118 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHh
Confidence 45778999999999999999999999987644 45632 1234455666777777788888776553 336666778899
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHhhccccc-cccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccccccc
Q 015927 113 GGAGRALLQVCIVV-NNLGMLVVYMIIIGDVLS-GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV 190 (398)
Q Consensus 113 G~~~~~i~~~~~~~-~~~g~~~~y~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 190 (398)
||+..++......+ ...+.+..+....++.+. ..+++ . ..+.+... .+. ...+.+.-.......
T Consensus 119 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----------~-~~~~~~~~--~i~-~~~i~~~~~ln~~Gv 184 (501)
T TIGR00911 119 GPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----------C-EVPEWAIR--LVA-VLCVLLLTLVNCLSV 184 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------C-CCchHHHH--HHH-HHHHHHHHHHHHhhh
Confidence 99988776554332 112333334444444331 11110 0 00011111 111 111111112223334
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccc-chhhhhhhhhhhhhhhhhhcccchhHHHhhcCCc
Q 015927 191 DSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENELKDP 269 (398)
Q Consensus 191 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 269 (398)
+...++..+...+.++.+++.++..++...+++.+.......++. ..+..++..++....|+|.|......+.+|+|||
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 444444443332222222222222222222221111000000111 1345577788899999999999999999999999
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 270 T-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 270 ~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
+ +.+|++..+..++.++|++..+.....
T Consensus 265 ~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~ 293 (501)
T TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTV 293 (501)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 799999999999999999986554433
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=99.45 E-value=1.9e-10 Score=113.53 Aligned_cols=239 Identities=15% Similarity=0.061 Sum_probs=146.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++.....++.++|+|++..|.... .+|- ..++..++.+++.......+.|...+. ..-...+.+++.+|
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g 96 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWG 96 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999887665 4464 477778888888888888888887765 45578889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
++..+++.....+.............+..++... +.. . ...+..+ .+.++-.......+..
T Consensus 97 ~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~--------------~~~--~-~~~~~~~--~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 97 PFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF--------------PDV--P-TWIWAAA--FFIIINAVNLVNVRLY 157 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcC--c-HHHHHHH--HHHHHHHHHHhcchhh
Confidence 9999988887776655444444444444442211 110 0 1111111 1111112222333333
Q ss_pred hhh---hHHHHHHHHHHHHHHHHHHHHHhhcCCC-C--C-Cccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhh
Q 015927 194 RYT---SALSVGLAIVFVVITAGVAIVKTIDGSI-S--M-PCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (398)
Q Consensus 194 ~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 265 (398)
..+ ..+.-+..++.+ +.+++ .....+.. + . ...+++.. ....+.++..++....|+|.|........+|
T Consensus 158 ~~i~~~~~~ikv~~i~~~-i~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E 234 (458)
T PRK10249 158 GETEFWFALIKVLAIIGM-IGFGL--WLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE 234 (458)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHH--HHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 333 222211111111 11111 11111110 0 0 01111100 0134556788899999999999999999999
Q ss_pred cCCcc-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 266 LKDPT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 266 m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
+|||+ +.+|++..+.....++|..........
T Consensus 235 ~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 235 ARDPEKSIPKAVNQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99998 689999999999999998755544433
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.44 E-value=3.5e-11 Score=118.00 Aligned_cols=249 Identities=12% Similarity=0.074 Sum_probs=153.9
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHcChhH
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAFGGAG 116 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~-~~~y~~l~~~~~G~~~ 116 (398)
+|+.+.++.+...+++++|+|++.+|......+-...++..++.++........+.|...+.+ .....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 578999999999999999999999997766443234556666777777777778888776553 3467778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhh
Q 015927 117 RALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYT 196 (398)
Q Consensus 117 ~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 196 (398)
.++......+.....+..+....++.+...++... .+. +.+.....++.....+..+...+++-....+..+...++
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG--LDL-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccC-chhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99998888877776777777777776654443100 000 000000000001110111111122222233344555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chhHH
Q 015927 197 SALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSI 275 (398)
Q Consensus 197 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~~~ 275 (398)
+.+...+.+...++.+.....+. + . ++..|.. ..+..++..++....++|.+.+......+|+|||+ +.+|+
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~-~--~--~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHF-A--S--NNYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhC-c--H--HhcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 54444322222222121121111 1 1 1111111 12355678889999999999999999999999997 78999
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q 015927 276 VRTSITLCSTVYITTSFFGLL 296 (398)
Q Consensus 276 ~~~~~~~~~~~Y~~~g~~gy~ 296 (398)
+..+..+..++|++.......
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998765543
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.43 E-value=2.1e-10 Score=114.21 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=139.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
.+|+.+.++.....++.++|+|++..|. +.+.+|- .+++..++.+++.......+.|...+. ..-.....+++.+||
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 4678999999999999999999999887 5556665 467777788888888888888887655 456888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
+..+++.....+.............+.... ..+ . ++. ...+...... .+++-.......+...
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-~~~----------~-~~~----~~~~~~~~~~-~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMH-YWG----------A-FGG----VPQWVFALAA-LTIVGTMNMIGVKWFA 167 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc----------c-CCC----CcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 998888777765543332222222222221 000 0 000 0111111111 1111122222333333
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHhhcCCCCCCc-----ccccccc--chhhhhhhhhhhhhhhhhhcccchhHHHh
Q 015927 195 YTSALSV---GLAIVFVVITAGVAIVKTIDGSISMPC-----LLPEISK--QASFWKLFTTFPVLVTAYICHHNIHPIEN 264 (398)
Q Consensus 195 ~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 264 (398)
.+..+.. +..++..+ .++ ......+...... .+.+..+ ...+.+++.++....|+|.|...+....+
T Consensus 168 ~i~~~~~~iki~~l~~~i-i~~--i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~ae 244 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFL-VVG--TVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAG 244 (499)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH--HHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3332222 11111111 111 1111111110000 0000000 12234455667788999999999999999
Q ss_pred hcCCcc-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 265 ELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 265 ~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
|+|||+ +.+|++..++....++|+.........
T Consensus 245 E~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 245 ECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 999999 699999999999999898876654443
No 27
>PRK11021 putative transporter; Provisional
Probab=99.40 E-value=1.6e-09 Score=105.58 Aligned_cols=227 Identities=17% Similarity=0.185 Sum_probs=138.7
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHH
Q 015927 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALL 120 (398)
Q Consensus 42 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~i~ 120 (398)
+.++++...+++|+|+|++.+|....+.+-...+...++.++........+.|...+. +.-.....+++.+||+..++.
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~ 81 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVT 81 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHH
Confidence 6789999999999999999998877755323567777788888888888888877654 455777888999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHHH
Q 015927 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALS 200 (398)
Q Consensus 121 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 200 (398)
.....+..............+.+...++ ...+ ......+. ..+++-....+..+...++..+.
T Consensus 82 gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~-~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 82 GWLFLSVIPVGLPAALQIAAGFGQALFG--------------WSSW--QLLLAELL-TLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcC--------------CCCc--hHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHH
Confidence 7766543322222222233333322211 1111 11111111 11111122233334443333332
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcc-ccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chhHHHHH
Q 015927 201 VGLAIVFVVITAGVAIVKTIDGSISMPCL-LPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRT 278 (398)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~~~~~~ 278 (398)
. ++...+ +... . ..+..+..+. +++.. ..++.++..++....|+|.+.+......+|+|||+ +.+|++..
T Consensus 145 ~---~~~~~i-~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 145 A---LLIVAL-VVAI-W--WAGDIKPADIPFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred H---HHHHHH-HHHH-H--HHcCCchhcCCCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 2 111111 1111 1 1111111111 11111 13456788889999999999999999999999997 79999999
Q ss_pred HHHHHHHHHHHHHhH
Q 015927 279 SITLCSTVYITTSFF 293 (398)
Q Consensus 279 ~~~~~~~~Y~~~g~~ 293 (398)
+...+.++|++....
T Consensus 217 ~~~~~~~lYil~~~~ 231 (410)
T PRK11021 217 GLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=99.38 E-value=1.8e-09 Score=106.61 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=146.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++....-+++++|+|++..|.... .+|- ..++..++.+++.......+.|..... ..-++.+.+++.+|
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g 85 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMS 85 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 45678999999999999999999999776555 5565 456677777888888888888876654 45688889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHH-HHHHHhhccccccccch
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLL-TTLFVFLPLISFRRVDS 192 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~l~~ 192 (398)
|+...++.....+.....+.......+..++..+ +. .. ...+..+ ...+..+-+.-.|...+
T Consensus 86 ~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~--------------p~--~~-~~~~~~~~~~~~~~lN~~gv~~~~~ 148 (461)
T PRK10746 86 PFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF--------------PE--MA-QWIPALIAVALVALANLAAVRLYGE 148 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------CC--Cc-hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999888887777665555555555555542221 11 00 1111111 11111111112233333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---Cccc-cccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcC
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM---PCLL-PEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 267 (398)
++......-+..++..++ +++...-...+..+. .+.+ ++.. ....+.++..++....|+|.+.+.+....+|+|
T Consensus 149 ~e~~~~~~ki~~i~~~ii-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 149 IEFWFAMIKVTTIIVMIV-IGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 333222211112111111 111111111111100 0111 1000 012356788999999999999999999999999
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
||+ +.+|+...+.....++|..........
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~ 258 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTI 258 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 998 899999988888888888865444333
No 29
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.38 E-value=4.8e-10 Score=105.45 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=175.6
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHH
Q 015927 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRAL 119 (398)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i 119 (398)
|.|..|....+..+++|+|++.+|....+.+- .|++..++.+........++.+..++++.++..|..++.+||+.+++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 47889999999999999999999999887763 77778888888888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHH
Q 015927 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (398)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 199 (398)
..+...++.+......+...++.++... ++ +...+. .....+++.-....+.++.+.+.+.+
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~-------------lp----~TP~~~-i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYL-------------LP----ETPIWV-IILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cC----cCCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999888888888888774321 11 112222 22222233334456667777765554
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCccchhHHHHHH
Q 015927 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVRTS 279 (398)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~ 279 (398)
-....++..++.. . ..-.+.+..+..|-.+ .+..++.++.....+.|.+...+.-+...+++|+|.+|....+
T Consensus 142 ~~~~~~i~~~~i~---~--~~~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLIL---L--LSIPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHH---H--HhcccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4422222222111 1 1123344445555333 4566778888888899999988999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHhhhcCCC
Q 015927 280 ITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 280 ~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
.....++|...-......||.+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999865
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.38 E-value=1.2e-10 Score=122.85 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=152.3
Q ss_pred cCCCCCcHHHHHHHH-HHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CCCCHHHHHHHH
Q 015927 36 AGIDGASFSGAVFNL-STTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-S-KSATYSGVVADA 111 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~-~-~~~~y~~l~~~~ 111 (398)
.+.++.+++++++.- +.+++|+|++- +++...++|...+++.++++++++..|...+.+.... . +.-.-..+.++.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 345788899998888 99999999987 6677779998888999999999999999999988775 2 333344455889
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccc
Q 015927 112 FGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (398)
Q Consensus 112 ~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (398)
+|+.....+.....+.....+..|....++.+..+++.... .. ........+-+... .++++..+ .....+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~--~~----~~~~~~~~~iia~i--~l~ll~~I-n~~Gvk 223 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS--KI----MVDPINDIRIYGTV--TVVVLLGI-SFAGME 223 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cc----ccCccccchHHHHH--HHHHHHHH-HHhhHH
Confidence 99988888888888877888888888888887665532100 00 00011011211111 11111111 122223
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------------Cccccccccchhhhhhhhhhhhhhhhhhcccc
Q 015927 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM-------------PCLLPEISKQASFWKLFTTFPVLVTAYICHHN 258 (398)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~ 258 (398)
....+..+.++ ..+..++.+. +.......... .+..|.+. ....+++..++++..||.|...
T Consensus 224 ~~ak~q~vl~v-i~ll~ll~~i--ig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~--~~~~~f~~~~ai~F~A~tGi~a 298 (953)
T TIGR00930 224 WENKAQVLFLV-IVLLSILNIF--VGTIIPAFDKPAKGFFGLGNEIFSENFIPGIP--GPEGGFFSLFGIFFPSVTGILA 298 (953)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH--heeeecCCCCCccceeeccchhhhhccCCCCC--CcccHHHHHHHHHHHHHHHHHH
Confidence 33333322221 1111111111 10001000000 00111111 1112266778888889999999
Q ss_pred hhHHHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhHHh
Q 015927 259 IHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (398)
Q Consensus 259 i~~i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy 295 (398)
...+..|+|||+ ..++....+..+++++|+++.+...
T Consensus 299 gan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 299 GANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 7999999999999999999976433
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.36 E-value=2.2e-09 Score=106.28 Aligned_cols=242 Identities=12% Similarity=0.132 Sum_probs=141.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA-SKSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~-~~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++.....+++++|+|++..|. +.+.+|. ..+...++.+++.......+.|.... ....++.+.+++.+|
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 35788999999999999999999999765 6667776 45666667777777777777776543 234467789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHH-HHHHHhhccccccccch
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLL-TTLFVFLPLISFRRVDS 192 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~l~~ 192 (398)
|...+++.....+.......+.....+..+...++ . . .......+ +..+..+-+.-.|...+
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p--------------~--~-~~~~~~~~~~~~~~~iN~~g~~~~~~ 158 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP--------------D--L-SDWVASLAVVLLLLSLNLATVKMFGE 158 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------C--C-cHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999988888766544444444444444422111 0 0 11111111 11111111111233333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCCCC----CCcccccccc-chhhhhhhhhhhhhhhhhhcccchhHHHhhc
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKT-IDGSIS----MPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~p~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 266 (398)
++.......+..++ .++..+...... .+.... ..+.+++... ...+.++..++....|+|.|...+....+|+
T Consensus 159 i~~~~~~~kl~~l~-~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 159 MEFWFAMIKIVAIV-ALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 33332222211111 111111111100 000000 0011110000 1234568889999999999999999999999
Q ss_pred CCcc-chhHHHHHHHHHHHHHHHHHHhHHhh
Q 015927 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLL 296 (398)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~ 296 (398)
|||+ +.+|++..+.....+.|.+.......
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 9998 68999987777888888876665543
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.36 E-value=1.9e-09 Score=106.49 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=150.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALP-ATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++.....+++++|+|++.+| .+.+.+|- .+++..++.+++.......+.|...+. +.-...+.+++.+|
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g 87 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIG 87 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 4678999999999999999999999999 56667775 467788888888888888888887654 45578889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|+..++......+.....+.......++.++..++ . ........ ..+++.-.......+..
T Consensus 88 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~---~~~~~~~~--~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 88 RWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP--------------D---IPLWLFSL--ILTIVLTLTNLYSVKSY 148 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------c---CcHHHHHH--HHHHHHHHHHHHhcchh
Confidence 99999988887777666666666666655532221 1 01111111 11111111222233333
Q ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHhhcCCCCC---Cccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhc
Q 015927 194 RYTSALSVG---LAIVFVVITAGVAIVKTIDGSISM---PCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (398)
Q Consensus 194 ~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 266 (398)
..+.....+ ..++..++ ++...........+. .+..++.. ....+.++..++....|+|.|.+......+|+
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~ 227 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFII-LGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES 227 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh
Confidence 333322221 11111111 111111001111010 01111000 01234568889999999999999999999999
Q ss_pred CCcc-chhHHHHHHHHHHHHHHHHHHhHHhh
Q 015927 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLL 296 (398)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~ 296 (398)
|||+ +.+|++..+......+|+........
T Consensus 228 k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 228 SNPIKSITRATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 9998 79999988888888999886554443
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.33 E-value=2.2e-09 Score=105.86 Aligned_cols=234 Identities=11% Similarity=0.070 Sum_probs=143.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
+.+|+.+.++....-+++++|+|++..|....+.+-...++..++.+++.......+.|...+. ..-.+.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 3578999999999999999999999988776654323456667777777777778888876554 456788888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHH-HHHhhccccccccchh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTT-LFVFLPLISFRRVDSL 193 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~~~~l~~l 193 (398)
...++......+.....+.......++.++...+ + ..+.....+.. .+..+-+.-.|...++
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------------~---~~~~~~~~i~~~~~~~lN~~gv~~~~~~ 151 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP--------------E---IPTWVSAAVFFVVINAINLTNVKVFGEM 151 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------c---CcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999888887777777776666666532211 1 01111111111 1111111112333333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcC-CCC---CCccccc--cccchhhhhhhhhhhhhhhhhhcccchhHHHhhcC
Q 015927 194 RYTSALSVGLAIVFVVITAGVAIVKTIDG-SIS---MPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (398)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~p~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 267 (398)
+.....--+..++.+++ + .......+ ..+ ..+.++. +. ...+.++..++....|+|.|-.......+|+|
T Consensus 152 ~~~~~~iki~~i~~~ii-~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 152 EFWFAIIKVIAVVAMII-F--GGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHH-H--HHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 33322222111111111 1 11111111 111 0111110 10 12344666778889999999999999999999
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHH
Q 015927 268 DPT-QIKSIVRTSITLCSTVYITT 290 (398)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~Y~~~ 290 (398)
||+ +.+|++..+.....+.|+..
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHH
Confidence 998 69999988888888887664
No 34
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.33 E-value=1.4e-09 Score=107.06 Aligned_cols=242 Identities=17% Similarity=0.105 Sum_probs=136.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHc
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGL-IPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAF 112 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~-~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~ 112 (398)
+.+|+.+.++.+...++.++|+|++..|.... ..|- ...+...++.+++.......+.|...+. +.-......++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 35678999999999999999999999998644 4553 2345556666777777777777766543 2223334456889
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccc
Q 015927 113 GGAGRALLQVCIV-VNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVD 191 (398)
Q Consensus 113 G~~~~~i~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 191 (398)
||....+...... .........+....++.+.... +..... ...... .....+-....+..+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~--------------~~~~~~-~~~~~~--~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT--------------PIDPLL-GKFIAA--GLIIAFMLLHLRSVE 147 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCchHH-HHHHHH--HHHHHHHHHHHhhhh
Confidence 9988877666533 2222233344444444442111 100000 111111 111111122233333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-
Q 015927 192 SLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT- 270 (398)
Q Consensus 192 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~- 270 (398)
....+..+.....++.+++.+.........++.+.+...+ ......+.++..++....|+|.+........+|+|||+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 3333333322222221111111111111111111111111 01112355677888899999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHh
Q 015927 271 QIKSIVRTSITLCSTVYITTSFFGL 295 (398)
Q Consensus 271 ~~~~~~~~~~~~~~~~Y~~~g~~gy 295 (398)
+.+|++..+..++.++|++......
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998766543
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.33 E-value=6.5e-09 Score=102.71 Aligned_cols=238 Identities=14% Similarity=0.129 Sum_probs=143.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++.+...+++++|+|++.+|.... .+|- ..++..++.+++.......+.|...+. ......+.+++.+|
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 35678999999999999999999999987744 5565 467888888888888888888887665 35677778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|...++......+.....+.......+..+...+ ++. ....+..+. +++.-....+..+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~--~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF--------------PTV---PHWIWVLSV--VLIICAVNLMSVKVF 145 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCC---ChHHHHHHH--HHHHHHHHHccchhH
Confidence 9999988887776654444444344444432211 110 011111111 111222222233333
Q ss_pred hhhhHHH---HHHHHHHHHHHHHH--HHHHhhcCCCC--CCcccccccc-chhhhhhhhhhhhhhhhhhcccchhHHHhh
Q 015927 194 RYTSALS---VGLAIVFVVITAGV--AIVKTIDGSIS--MPCLLPEISK-QASFWKLFTTFPVLVTAYICHHNIHPIENE 265 (398)
Q Consensus 194 ~~~s~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~p~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 265 (398)
..+..+. .+..++ .++..+. ......+...+ ..+.+++-.. ...+.++..++....|+|.|........+|
T Consensus 146 ~~~~~~~~~~~~~~l~-~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 146 GELEFWFSFFKVATII-IMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3333222 111111 1111111 11111111000 0011110000 123446778889999999999999999999
Q ss_pred cCCcc-chhHHHHHHHHHHHHHHHHHHhHH
Q 015927 266 LKDPT-QIKSIVRTSITLCSTVYITTSFFG 294 (398)
Q Consensus 266 m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~g 294 (398)
+|||+ +.+|++..+......+|.......
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 589999888888888887765443
No 36
>PRK10836 lysine transporter; Provisional
Probab=99.31 E-value=9.9e-09 Score=102.26 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=141.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+.+|+.+.++.....+++++|+|++..|. +.+.+|-...++..++.+++.......+.|...+. +.-.....+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 35688999999999999999999999996 55566764467888888899988899999887765 55677788889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccch
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGD-VLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (398)
+..+.++.....+..... .+.....++ .+.. +++.. ........++..+..+-+.-.|..++
T Consensus 92 ~~~gf~~Gw~~~~~~~~~-~a~~~~a~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~lN~~gv~~~~~ 154 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVT-IAVDLVAAQLVMSW--------------WFPDT--PGWIWSALFLGVIFLLNYISVRGFGE 154 (489)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh--------------cCCCC--chHHHHHHHHHHHHHHHHHcchhhhh
Confidence 988887776655433222 222222222 1211 11100 00011111111111222222333334
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHhhcCCC-CCCccccc--cccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCC
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAI-VKTIDGSI-SMPCLLPE--ISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~p~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 268 (398)
.+....+..+..++.. +.+++.. ....++.. ...+.+.+ ......+..+........|+|.|...+....+|+||
T Consensus 155 ~~~~~~~~ki~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 233 (489)
T PRK10836 155 AEYWFSLIKVTTVIVF-IIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233 (489)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 3333332221121111 1111111 11111110 00111110 000123444555566667999999999999999999
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 269 PT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 269 ~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
|+ +.+|++..++..+..+|+.........
T Consensus 234 P~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 234 PAKNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 98 799999999999999999886554443
No 37
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.31 E-value=4.1e-09 Score=104.55 Aligned_cols=243 Identities=12% Similarity=0.024 Sum_probs=140.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATV-KELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~-~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
.+|+.+.++.....+++++|+|++..|... +.+|-...++..++.+++.......+.|...+. +.-.+...+++.+||
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 468899999999999999999999887765 566644456677777788888888888876654 445678889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
+..+++.....+.....+.......+..++... +.. .......+.. +++-....+..+...
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~--------------p~~---~~~~~~~~~~--~~~~~in~~gvk~~~ 152 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF--------------PQV---PVWPWCLLFC--ALIFGLNVVSTRFFA 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------CcC---cHHHHHHHHH--HHHHHHHHHhHHHHH
Confidence 998887777666544443333333332221111 100 0111111111 111122222233333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCccccccc--cc--hhhhhhhhhhhhhhhhhhcccchhHHHhhc
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDG----SISMPCLLPEIS--KQ--ASFWKLFTTFPVLVTAYICHHNIHPIENEL 266 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~--~~--~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 266 (398)
........+-++.++..+.......... +.+.....++.+ ++ ....++..++....|+|.|-..+....+|+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 2221111111111111111111111100 000000000111 11 123456777888899999999999999999
Q ss_pred CCcc-chhHHHHHHHHHHHHHHHHHHhHHhhhc
Q 015927 267 KDPT-QIKSIVRTSITLCSTVYITTSFFGLLLF 298 (398)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 298 (398)
|||+ +.+|++..+......+|+..........
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999 6999999999999999998876544443
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.29 E-value=4.1e-09 Score=103.24 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=149.6
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHHh-hcCCCCHHHHHHHHcChhHHHH
Q 015927 42 SFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSR-ASKSATYSGVVADAFGGAGRAL 119 (398)
Q Consensus 42 s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~-~~t~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~i 119 (398)
++++++...++.++|+|++..| .....|.. .++..++.+.+. ......+.|... ..+.-......++.+||+.+++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 6789999999999999999999 66666664 555555555555 566677777665 3467788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHH
Q 015927 120 LQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSAL 199 (398)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 199 (398)
......+........+.....+.+...+. .....+ ......+.+. .++..-....+..+...++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~i~~~-~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFG----------PDLNPS--PWPQFLIAII-LILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTT----------GGGTCS--HHHHHHHHHH-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhccc----------cccccc--cchheeeeec-ccccceEeeechhhhhhhhhhh
Confidence 99988888887777777777777643321 111110 1111121211 1122222233344444444444
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhcCCCCC-CccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCccchhHHHH
Q 015927 200 SVGLAI-VFVVITAGVAIVKTIDGSISM-PCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPTQIKSIVR 277 (398)
Q Consensus 200 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~ 277 (398)
...+.+ ..+++.+....+...++..+. +...++..+ .....+..+++...++|.|.+..+...+|+|| |+.+|++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP-SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC-SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCC-ccccchhhHHHHHHhhcccccccccccccccc-hhheeecc
Confidence 432222 121122222222211111110 000111111 12224678899999999999999999999998 79999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCC
Q 015927 278 TSITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 278 ~~~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
.+..++.++|.+.........+++
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred cchhHHHHHHhhhhheeeecccch
Confidence 999999999999977777666543
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.28 E-value=9e-09 Score=101.33 Aligned_cols=234 Identities=12% Similarity=0.041 Sum_probs=143.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
+.+|+.+.++.+..-++.++|......+..++..|+..-+...++.+++.......+.|...+. +.-.....+++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 3567899999999999999985445568888888986545555666666666667777776554 445777888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
+.+++......+........+....++.+...+++ . .......++. .++-....+..+...
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~--------------~---~~~~~~~~~~--~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV--------------G---PGWLAALVFY--IVFIGINILGVGEAA 144 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------C---chhHHHHHHH--HHHHHHHHHHHHHHH
Confidence 99998888887777666777777777766433321 0 0111111111 111122223333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc----cccc--chhhhhhhhhhhhhhhhhhcccchhHHHhhcCC
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLP----EISK--QASFWKLFTTFPVLVTAYICHHNIHPIENELKD 268 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 268 (398)
++......+.++.+++..+. ...+ .+..+..+ +.+. ...+.++..++....++|.+........+|+||
T Consensus 145 ~i~~~~~~~~~~~l~i~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIGA---MVPH--FDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHH---Hhcc--CCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333221111111111111 0001 11111000 0010 122446778888889999999999999999999
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHhH
Q 015927 269 PT-QIKSIVRTSITLCSTVYITTSFF 293 (398)
Q Consensus 269 ~~-~~~~~~~~~~~~~~~~Y~~~g~~ 293 (398)
|+ +.+|++..+..++..+|+.....
T Consensus 220 P~r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 220 PKRDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHH
Confidence 97 79999999999998888876543
No 40
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.28 E-value=2.3e-09 Score=107.97 Aligned_cols=255 Identities=12% Similarity=0.040 Sum_probs=149.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHc
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVK--ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK-SATYSGVVADAF 112 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~--~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~-~~~y~~l~~~~~ 112 (398)
+.+|+.+.++.+..-++.++|+|++.+|.... .+|-. .++..++.++.+......+.|...+.+ .-+.....++.+
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~ 103 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTV 103 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHh
Confidence 35788999999999999999999999986543 46754 566677777788888888888776553 335555667889
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhh--hccccc-cchhHHHHHHHHHHhhccccccc
Q 015927 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEW--FGQHWW-TTRFTLLLLTTLFVFLPLISFRR 189 (398)
Q Consensus 113 G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~ 189 (398)
|+...+++.....+.....+.......++++..++..... ...... ...+.. ........++ ++++-....+.
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~--~~~~~~~~~~~~~l~~~~~~~a~~i--i~l~~~ln~~G 179 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIG--QFRRTYFKLNYDGLAEYPDFFAVCL--ILLLAVLLSFG 179 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccccCCcccccchHHHHHH--HHHHHHHHHhc
Confidence 9999998888777665554444444444444333211000 000000 000000 0011111111 12222233445
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc--cccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcC
Q 015927 190 VDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC--LLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELK 267 (398)
Q Consensus 190 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 267 (398)
.+...++..+...+-+..+++.+.....+....+..... ..+++. ...+.+++.+.....|+|.|...+....+|+|
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 555555555444322222222222111111101110000 000111 12345788889999999999999999999999
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHhHHhh
Q 015927 268 DPT-QIKSIVRTSITLCSTVYITTSFFGLL 296 (398)
Q Consensus 268 ~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~ 296 (398)
||+ +.+|+...+..+++++|.++...-..
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~ 288 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTL 288 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999 69999999999999999998766443
No 41
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.26 E-value=1.5e-08 Score=100.79 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=144.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHcCh
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASK--SATYSGVVADAFGG 114 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~-~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~--~~~y~~l~~~~~G~ 114 (398)
+|+.+.++.....++.++|+|++..|. +.+.+|-...+...++.+++.......+.|...+.+ .-.|.+.+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 467899999999999999999998764 445556433466677777888888888888877664 33688999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
...+++.....+.....+.......+..+....+ . .. ...+..+.. ++.-+...+..+...
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~-~~~~~~~~~--~~~~~in~~gv~~~~ 141 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------------K--VN-PAVWIAIFY--VFIVIINLFGVKGYG 141 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------C--CC-HHHHHHHHH--HHHHHHHHhcchHHH
Confidence 9999988887776666666666655555422111 0 00 111111111 111112233333333
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHhhcCCCCCC----ccc---cccccc---hhhhhhhhhhhhhhhhhhcccchhH
Q 015927 195 YTSALSV---GLAIVFVVITAGVAIVKTIDGSISMP----CLL---PEISKQ---ASFWKLFTTFPVLVTAYICHHNIHP 261 (398)
Q Consensus 195 ~~s~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---p~~~~~---~~~~~~~~~~~~~~faf~~~~~i~~ 261 (398)
.+..+.. +..++..+ .+++ .....+..+.. ..+ +.+.+. ..+.++..++....|+|.|......
T Consensus 142 ~~~~~~~~~ki~~l~~~i-i~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 218 (478)
T TIGR00913 142 EAEFWFSSIKILAIIGFI-ILSI--ILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVAL 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH--HHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHH
Confidence 3332221 11111111 1111 11111110000 000 011111 1256678888899999999999999
Q ss_pred HHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhH
Q 015927 262 IENELKDPT-QIKSIVRTSITLCSTVYITTSFF 293 (398)
Q Consensus 262 i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~ 293 (398)
..+|+|||+ +.+|++..+...+.++|++....
T Consensus 219 ~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 219 TAGEAANPRKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 79999999999999999987544
No 42
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.15 E-value=7.9e-10 Score=92.38 Aligned_cols=222 Identities=15% Similarity=0.233 Sum_probs=145.3
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------
Q 015927 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRA--------------------- 98 (398)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~--------------------- 98 (398)
..|..-....+.|-++|+|.|+||.+|+.+||.+++.++.+.+.+++.+....+++...
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 34556677889999999999999999999999999999999999999998888776530
Q ss_pred ------------------------------------cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015927 99 ------------------------------------SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDV 142 (398)
Q Consensus 99 ------------------------------------~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~ 142 (398)
+++.+.++++...|.|.+-.+.-++++++++|-...|....--.
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 23557889999999999999999999999999999998765544
Q ss_pred cccccccCccC--CCc----c----hhhhcc--ccccchhHHHHHHHHHHhhcccc--ccccchhhhhhHHHHHHHHHHH
Q 015927 143 LSGAWLNGVHH--SGV----T----EEWFGQ--HWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRYTSALSVGLAIVFV 208 (398)
Q Consensus 143 l~~~~~~~~~~--~~~----~----~~~~~~--~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s~~~~~~~~~~~ 208 (398)
.-++....... .++ . +...+. ...+..++.+.++++++.+|+.+ +.+-+.++.+..+..+......
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhccch
Confidence 33332211000 010 0 000110 01122335556667777778776 4445556666666554332222
Q ss_pred HHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc
Q 015927 209 VITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (398)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 270 (398)
+.+. ..+..-+....+|. ...+-++-+.++..+|+|.+|.+.|.....++.+.
T Consensus 251 -~~l~-----tmqaeedaa~a~p~---arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 -ISLA-----TMQAEEDAAAAHPP---ARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred -hhhh-----hhhhcccccccCCc---cccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 1111 11111112222332 12344445668888999999999999988887654
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.11 E-value=1.1e-07 Score=93.63 Aligned_cols=220 Identities=16% Similarity=0.190 Sum_probs=134.1
Q ss_pred HHHHHhhhhhhHHH-HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHHHHHHHHHH
Q 015927 51 STTIVGAGIMALPA-TVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALLQVCIVVNN 128 (398)
Q Consensus 51 ~~~~iG~GiL~lP~-~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~i~~~~~~~~~ 128 (398)
+++++|+|++..|. +.+++|. ..++..++.+++.......+.|...+. +.-...+.+++.+||+...++.....+..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 57899999999988 6667785 478888888898888888888887665 45588899999999999998888877665
Q ss_pred HHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc---ccccchhhhhhHHHHHHHH
Q 015927 129 LGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS---FRRVDSLRYTSALSVGLAI 205 (398)
Q Consensus 129 ~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~---~~~l~~l~~~s~~~~~~~~ 205 (398)
...+.......+..++ .+.+. .....+.. ..++++-+.. .|....++....+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~-~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 83 VLVIPLEANIAAMILH--------------SWVPG----IPIWLFSL-VITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHH--------------hcccc----CcHHHHHH-HHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 5544444433333331 11110 01111111 1111111222 2333333333332221111
Q ss_pred HHHHHHHHHHHHHhhcCCCC--CC----ccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chhHHHH
Q 015927 206 VFVVITAGVAIVKTIDGSIS--MP----CLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVR 277 (398)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~--~~----~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~~~~~ 277 (398)
+. ++.++. .. ..+..+ .. +.+++-. ....+.++..++....|+|.|.+.+....+|+|||+ +.+|++.
T Consensus 144 i~-~ii~~~--~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~ 219 (446)
T PRK10197 144 LA-FIFLGA--VA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATN 219 (446)
T ss_pred HH-HHHHHH--HH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHH
Confidence 11 111111 11 111111 00 1111000 012355788999999999999999999999999999 6999999
Q ss_pred HHHHHHHHHHHHHHhHH
Q 015927 278 TSITLCSTVYITTSFFG 294 (398)
Q Consensus 278 ~~~~~~~~~Y~~~g~~g 294 (398)
.+.....++|+...+..
T Consensus 220 ~~~~~i~i~Yil~~~~~ 236 (446)
T PRK10197 220 SVIWRISIFYLCSIFVV 236 (446)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999866553
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.06 E-value=3.3e-07 Score=90.86 Aligned_cols=250 Identities=15% Similarity=0.131 Sum_probs=153.3
Q ss_pred cCCCCCcHHH-HHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcC
Q 015927 36 AGIDGASFSG-AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFG 113 (398)
Q Consensus 36 ~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G 113 (398)
+++|+.+.++ ......+.++|.|++.+|......+ .......++.+.+.......+.|...+. +.-.+....++.+|
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 4566777777 8899999999999999998888775 2222224445555555556666665543 44468888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchh
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSL 193 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 193 (398)
|+..++......+..............+.+...++... ...... -...........+.-+...+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-------LLSIGP----LLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------hhcCCc----hHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 98888888888877777777777777765544433100 000000 0111111111122222234444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-c
Q 015927 194 RYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q 271 (398)
Q Consensus 194 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~ 271 (398)
.+...+..++.++..++............. ....++.. .......+..++....++|.|-.......+|+|||+ +
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ 233 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSN---GNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRT 233 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccc
Confidence 444444443333333322222222211111 11111111 223344678888999999999999999999999996 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLLFGD 300 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 300 (398)
.+|++..+...+..+|...........++
T Consensus 234 ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 234 IPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 89999999999999999998887777664
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.02 E-value=1.4e-06 Score=82.68 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=157.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcCh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGG 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~ 114 (398)
-+|+.+..+--+.-++..||+|.+- --.+.+.+|-- -++.-.+++.+.++-.+.+.|....+ ...++.+.+++.+|+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~ 89 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP 89 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence 4678888888899999999999753 56666677743 24445567778888888888877654 678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
++..+..-...+.....+++.+...+.+++ .|++.. ..-...+.....+...-+...|...++.
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~--------------~WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~E 153 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQ--------------FWFPDV--PQWVFALAAVVLLLAVNLISVKVFGELE 153 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998884 343321 0011112222223344455677777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSIS---MPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 270 (398)
+.-.+--+.+++.+++.-...+..-+..+.+ .++.+..-. -.+.+.+++.++...+|||.+.+.+---..|-|||+
T Consensus 154 fWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~ 233 (462)
T COG1113 154 FWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE 233 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh
Confidence 6665555444444333222222221222111 111111000 114577889999999999999999999999999999
Q ss_pred -chhHHHHHHHHHHHHHHHH
Q 015927 271 -QIKSIVRTSITLCSTVYIT 289 (398)
Q Consensus 271 -~~~~~~~~~~~~~~~~Y~~ 289 (398)
..+|+.+....=..++|..
T Consensus 234 k~ipkAin~V~~RI~iFYvg 253 (462)
T COG1113 234 KAIPKAINSVIWRILIFYVG 253 (462)
T ss_pred hHHHHHHhhhhHHHHHHHHH
Confidence 5678777666666666654
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.91 E-value=6.6e-06 Score=81.80 Aligned_cols=258 Identities=11% Similarity=-0.027 Sum_probs=134.9
Q ss_pred cCCCCCcHHHHHHHHHHHH-HhhhhhhHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHc
Q 015927 36 AGIDGASFSGAVFNLSTTI-VGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAF 112 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~~~~-~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~ 112 (398)
+-+|+.+.++.+..-.+.+ +++|+..+|..-. ..|- ..+...++.++........+.|...+. ..-.....+++.+
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 3467789999988888875 8999999765554 4454 445666667777777777788776655 3446667778999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccch
Q 015927 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (398)
Q Consensus 113 G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (398)
||+..++......+................+..+.+.... .+.-+++..+.. ......+.+ ..+++.-+...+..+.
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI-IGEDPTLTSPSG-AANAVLLGS-VLLVLTTVINCIGVEW 165 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccCccccCCCc-hHHHHHHHH-HHHHHHHHHHHhhhhH
Confidence 9998888877766654433333333333322211110000 000000000000 001111111 1112221222233344
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISM--PCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT 270 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 270 (398)
..++..+...+.++.+++.++..... .+.+... ....++ ........+..+.....|+|.|-.....+.+|+|||+
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~-~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~ 243 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTH-AQRGPGVVFDTSVTG-ASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR 243 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceeeecCCCC-CCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc
Confidence 44444433322222221111111111 1110000 000000 0011123455566667899999999999999999998
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 015927 271 -QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (398)
Q Consensus 271 -~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 299 (398)
+.+|++..+..+..++|...-+......+
T Consensus 244 r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 244 RVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78999999999887766665555444433
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.72 E-value=6.5e-05 Score=75.12 Aligned_cols=239 Identities=10% Similarity=0.143 Sum_probs=128.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcC--CCCHHHHHHHHcC
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLT-ESSIDMIMRFSRASK--SATYSGVVADAFG 113 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~-~~t~~~l~~~~~~~~--~~~y~~l~~~~~G 113 (398)
++|+.+.++.+...+++++|.+ .+|.+++..|.. +++..++.+++. .-....+.|.....+ .-.-..-.++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 4678999999999999999976 568888888864 444455555443 334556677766554 3577778899999
Q ss_pred hhHHHHHHHHHHHHHHHHH---H-------HHHHhhccccccccccCccCCCcchhhhccccccch-hHHHHHHHHHHhh
Q 015927 114 GAGRALLQVCIVVNNLGML---V-------VYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR-FTLLLLTTLFVFL 182 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~---~-------~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 182 (398)
|+.+++............. . .+.. .+.... +.+ +....... ......+..+.++
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~-~~~~~~~~~~~~~~a~~~~~~~ 146 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTT-------------QTW-HFLGLNSTQVVGILAVIWMILV 146 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchh-------------hhh-hhhcccchHHHHHHHHHHHHHH
Confidence 9998765433222211111 1 1111 111110 000 00000111 1111111111122
Q ss_pred ccccccccchhhhhhHHHHHHHHHHH--HHHHHHHHHHhhcC-CCCCCcccccc-----ccchhhhhhhhhhhhhhhhhh
Q 015927 183 PLISFRRVDSLRYTSALSVGLAIVFV--VITAGVAIVKTIDG-SISMPCLLPEI-----SKQASFWKLFTTFPVLVTAYI 254 (398)
Q Consensus 183 pl~~~~~l~~l~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~faf~ 254 (398)
-....+..+..+.++.++..+.++.. ++++... .....+ ..+.+....++ +.+.+..++..++....|+|.
T Consensus 147 t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 225 (496)
T PRK15238 147 TFVASKGINKIAKVTSIGGIAVMLLNIVLLLVSII-ILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYG 225 (496)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHH
Confidence 23334555555555544332111110 1111111 111111 11111100000 011112356677788899999
Q ss_pred cccchhHHHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhHH
Q 015927 255 CHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFG 294 (398)
Q Consensus 255 ~~~~i~~i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~g 294 (398)
+.+......+|+|||+ +.+|++..+.....++|.+...+.
T Consensus 226 G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 226 GIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred hHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 799999999999999999864433
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.71 E-value=2.2e-05 Score=78.33 Aligned_cols=246 Identities=7% Similarity=-0.043 Sum_probs=119.4
Q ss_pred CCCCCcHHHHHHHHHHHHHh--hhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHc
Q 015927 37 GIDGASFSGAVFNLSTTIVG--AGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAF 112 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~ 112 (398)
.+|+.+.++.+..-.+ .+| +|+.. .+.+.+..|-...+...++.+++.......+.|...+. +.-.....+++.+
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 4567888887766666 444 56544 34566666765456667777788888888888877655 3456777778887
Q ss_pred Chh----HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccccc
Q 015927 113 GGA----GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (398)
Q Consensus 113 G~~----~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (398)
|++ ..++..-...+.....+.......++.+......... . .++..+.+ . ... .......++-+....
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~-~--~~~-i~~~~~~~~~~in~~ 160 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTP-G---REYIPTRW-H--IFG-IMIGIHLIHALINSL 160 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C---CCccccCc-h--hhh-hHHHHHHHHHHHHHh
Confidence 753 3444444444444443333333333333221110000 0 00111111 1 111 111111111122222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-----cccccccc-hhhhhhhhhhhhhhhhhhcccchhHH
Q 015927 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPC-----LLPEISKQ-ASFWKLFTTFPVLVTAYICHHNIHPI 262 (398)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i 262 (398)
..+.+..+..+.....++..++........ .+.+.+..+ ..|+..++ ++...+..++....|+|.+.......
T Consensus 161 g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~ 239 (482)
T TIGR00907 161 PTKWLPRITSSAAYWSLLGFLTICITLLAC-KSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHM 239 (482)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHH
Confidence 233333333332212221111111111111 111111100 01110011 11123445556677999999999999
Q ss_pred HhhcCCcc-chhHHHHHHHHHHHHHHHHHHh
Q 015927 263 ENELKDPT-QIKSIVRTSITLCSTVYITTSF 292 (398)
Q Consensus 263 ~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~ 292 (398)
.+|+|||+ +.+|++..+..+..++|....+
T Consensus 240 a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred HHhcCChhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 7899999988877665444333
No 49
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.71 E-value=1.2e-05 Score=72.93 Aligned_cols=227 Identities=15% Similarity=0.197 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhhhhhhH---HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHH
Q 015927 44 SGAVFNLSTTIVGAGIMAL---PATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALL 120 (398)
Q Consensus 44 ~~~~~~l~~~~iG~GiL~l---P~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~ 120 (398)
.+-.+..+.+++|+|.=+= =.-|.+-|+. |....++++.+...++..+.+..++-+..+|.|.-++.+||+..++.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHH
Confidence 4556777889999998663 3334455664 77788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHH-HHHHHHhhccccccccchhhhhhHH
Q 015927 121 QVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLL-LTTLFVFLPLISFRRVDSLRYTSAL 199 (398)
Q Consensus 121 ~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~l~~l~~~s~~ 199 (398)
|+.+++++++.+..-+.-.++.+ +|-++-+. ++. ++...++..+.+.++.+.+-.+..+
T Consensus 85 d~~iif~lf~~~vVM~AGags~~--------------~e~~~lP~------wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 85 DIIIIFFLFSTAVVMLAGAGSLL--------------EEMFGLPY------WIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred HHHHHHHHHHHHHHHhccchhHH--------------HHHhCccH------HHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 99999999999998888777666 34433222 222 2223333444455556665544443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhh-cccchhHHHhhcCCccchhHHHHH
Q 015927 200 SVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRT 278 (398)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~~~~~~~~~~~ 278 (398)
-+.+-+++...+. ..+...+.+.+...+++. ..++.. .+.+-..+... +...+.++-++|++++.-.+....
T Consensus 145 I~P~LIi~l~~v~--~~~~f~~~~~~a~~~~~~---~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~ 217 (349)
T COG3949 145 ITPFLIIILVLVT--LSFQFTNLGNAAQIVLTK---QGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLI 217 (349)
T ss_pred HHHHHHHHHHHHH--HHHHHhhccchhhhcCCc---CCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhh
Confidence 3322222222111 112211111111111111 111211 11111112222 455666778999999865655555
Q ss_pred HHHHHHHHHHHHHhHHhhhc
Q 015927 279 SITLCSTVYITTSFFGLLLF 298 (398)
Q Consensus 279 ~~~~~~~~Y~~~g~~gy~~f 298 (398)
+-.+.+++..+....-...+
T Consensus 218 gglIlgvl~~l~nlsLi~~~ 237 (349)
T COG3949 218 GGLILGVLLFLINLSLIALY 237 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhc
Confidence 55555555444443333333
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.63 E-value=5.3e-07 Score=89.66 Aligned_cols=251 Identities=13% Similarity=0.045 Sum_probs=160.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHc
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKS--ATYSGVVADAF 112 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~--~~y~~l~~~~~ 112 (398)
+-+|+.+.+.-...-+++++|+|++- ...+.++.|-..-++..++.+.....+...+.|...+-++ -++...+++..
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i 106 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFV 106 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeee
Confidence 45678888888899999999999987 4777777787777777788888889999999999888765 57888889999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccch
Q 015927 113 GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDS 192 (398)
Q Consensus 113 G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 192 (398)
|+.+..++.--.++..+-.+.+-....+..++... . .+......+.. +..-++......++++.+...+-...
T Consensus 107 ~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~-~~~~~~~~~~~-----~~~~~~~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 107 GESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-G-ASLIGILVDTV-----NPGGWIPDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-c-cccccccccCC-----CCCccHHHHHHHHHHHHHHHHhhccc
Confidence 99999888888888877777777777777664332 0 00000000000 00111112222223333333333233
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccccc---cc-----cchhhhhhhhhhhhhhhhhhcccchhHHH
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMP-CLLPE---IS-----KQASFWKLFTTFPVLVTAYICHHNIHPIE 263 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~---~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (398)
..+......+++.+-.++..++.. -|..+.+ +.+-. ++ .+..+.+++..+-...|+|.|...+-...
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~----~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVII----AGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeee----cCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 333333333222222222111111 1112111 11111 11 11237788999999999999999999999
Q ss_pred hhcCCcc-chhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 264 NELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 264 ~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
+|-|||+ ..+++...+...+..+|+...+.--+.
T Consensus 256 ~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~ 290 (554)
T KOG1286|consen 256 EEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLL 290 (554)
T ss_pred HhccCCcccccHHHHHHHHHHHHHHHHHHHHheEE
Confidence 9999998 799999999999999999987665443
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.56 E-value=0.0001 Score=73.86 Aligned_cols=230 Identities=12% Similarity=0.115 Sum_probs=115.0
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHH--HHHHHHHHHHhhc--CCCCHHHHHHHHcC
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTE--SSIDMIMRFSRAS--KSATYSGVVADAFG 113 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~--~t~~~l~~~~~~~--~~~~y~~l~~~~~G 113 (398)
+++.+.++-++..+.... ++..+| .+++.|+ +.+...+++.+.+ -......|..... +.-....-+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 456888877776666665 556888 5777784 3444444444433 3556666665532 34567777899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHhhccccccccccCccCCCcchhhhccccccchh-HHHHHHHHHHhhccccccc
Q 015927 114 GAGRALLQVCIVVNNLGMLVV---YMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRF-TLLLLTTLFVFLPLISFRR 189 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~---y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~ 189 (398)
++++.+......+........ ........+.. . +. ++. ... ..+.....+...-+...+.
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~----------~~-~~~----~~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-F----------PA-LNE----DPIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------ch-hcc----CcHHHHHHHHHHHHHHHHHHHhh
Confidence 998887655544433211111 11111111100 0 00 000 011 1111111111222223333
Q ss_pred cchhhhhhHHHHHHHHHH-HHHHHHHHHHHhhcCCCCC-C----ccccccccchhhhhhhhhhhhhhhhhhcccchhHHH
Q 015927 190 VDSLRYTSALSVGLAIVF-VVITAGVAIVKTIDGSISM-P----CLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIE 263 (398)
Q Consensus 190 l~~l~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 263 (398)
.+....++.++.+...+. .++.+.........+.... + ...|+.. + .+....+....|+|.|.+......
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~~faf~G~E~~a~~a 217 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFS---K-VGTLVVFVAFIGAYMGVEASASHI 217 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcc---c-ccHHHHHHHHHHHHhcHHHHHHHH
Confidence 444444443332111111 1111111111112221111 1 1112111 1 122334445689999999999999
Q ss_pred hhcCCcc-chhHHHHHHHHHHHHHHHHHHh
Q 015927 264 NELKDPT-QIKSIVRTSITLCSTVYITTSF 292 (398)
Q Consensus 264 ~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~ 292 (398)
+|+|||+ +++|++..+.++...+|.+..+
T Consensus 218 ~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 218 NELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7999999999999998876443
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.53 E-value=0.00015 Score=72.08 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=44.4
Q ss_pred hhhhhhhcccchhHHHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 015927 248 VLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFG 299 (398)
Q Consensus 248 ~~~faf~~~~~i~~i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 299 (398)
.+.++|.|.+......+|+|||+ +.+|++..+...+.++|+...+......+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45789999999999999999998 79999999999999999886665544443
No 53
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.43 E-value=0.00012 Score=71.24 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=161.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHcCh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSA-TYSGVVADAFGG 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~-~y~~l~~~~~G~ 114 (398)
-+|+.....-.+.-++..+|+|.+- .-.+..++|-...++.-.+.+.+.+.+...+.|.....+.. ++.+.+.+...+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 4578888888999999999999864 78899999999889999999999999999999988776544 499999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhh
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLR 194 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 194 (398)
.....+.-...+...-.+...+...+..+ +.|.+.. .+..-++.....+++++-+.-.|...+..
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi--------------~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E 186 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVI--------------QYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETE 186 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhh--------------hhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceeh
Confidence 88888888888877777777777777666 3343221 11222233333333334444566666655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCccccccc-cchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-c
Q 015927 195 YTSALSVGLAIVFVVITAGVAIVKTIDGSIS-MPCLLPEIS-KQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q 271 (398)
Q Consensus 195 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~ 271 (398)
+....--+++++..++.-++......+...+ ..+.|.+.. -.+.+.++...+-+..|+|.|.+.+---..|-+||+ .
T Consensus 187 fw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~ 266 (541)
T COG0833 187 FWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKS 266 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhh
Confidence 5444333233333322222221111111000 011111101 113577888888899999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 015927 272 IKSIVRTSITLCSTVYITTS 291 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g 291 (398)
.+|+..-...=..++|+..-
T Consensus 267 iPkAik~vfwRIl~FYi~si 286 (541)
T COG0833 267 IPKAIKQVFWRILLFYILSI 286 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887643
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.32 E-value=0.00017 Score=70.09 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=49.9
Q ss_pred hhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 015927 238 SFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 238 ~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
+.+.+.-++-.-++.+.|-..-+.+.+|-||++ +.+|.+..+..+.+++=..+-+.-..+-+++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 445566667777888889999999999999998 7888888888888777777666666666643
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.28 E-value=0.0029 Score=62.27 Aligned_cols=253 Identities=13% Similarity=0.038 Sum_probs=129.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~--~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (398)
+|+.++++-+..-.+..+...-+.+...... .++..+++..++-.++...-..+......|++ .++..+.|..||++
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G-l~~~v~sR~~FG~~ 89 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG-LPFPVLSRASFGIY 89 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-CCcchhhhhhhhhh
Confidence 3444655555555555555444444433332 34555665555555555444445555555554 45666779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc---ccccch
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS---FRRVDS 192 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~---~~~l~~ 192 (398)
|..+..++..+...|=........++.+..++........ ..+++ .+.......++...+.+++.. .|-.+.
T Consensus 90 Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~----~~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~ 164 (442)
T TIGR00800 90 GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYL----HLGNG-MTTLELICFIIFWALVLVFLFFFGYKIRHL 164 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc----ccCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999998888887777777777666444321100000 00000 001112222222233433222 222333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhh-hhcccchhHHHhhcCCccc
Q 015927 193 LRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQ 271 (398)
Q Consensus 193 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~~~~ 271 (398)
+++.+....++. +........+. ++..+.....+..+.......+..++...+-. -..-.+.+...+.+|++++
T Consensus 165 ~~~~a~~~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~ 239 (442)
T TIGR00800 165 FEWLAVVPPFAA----FGMLIWALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT 239 (442)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc
Confidence 444444332111 11111111221 11111111111111123344555555554333 3456688999999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhh----cCCC
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLL----FGDR 301 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~----fg~~ 301 (398)
-.+....+..........+|..+-.. +|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 66667777777888888888777765 7654
No 56
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.26 E-value=8.6e-06 Score=81.09 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=141.8
Q ss_pred HHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHcChhHHHHHHHHHHHH
Q 015927 50 LSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS-KSATYSGVVADAFGGAGRALLQVCIVVN 127 (398)
Q Consensus 50 l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~i~~~~~~~~ 127 (398)
-+.+++|+|++. .+.+..+.|....++..++.+++...+...+.+..++. +.-.+.+..++.+||.....+.....+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 356788888776 57788888887778888888888888888888877654 5558888889999999888777776666
Q ss_pred HHHHHHHHHHhhccccccc--cccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHHHHHHHH
Q 015927 128 NLGMLVVYMIIIGDVLSGA--WLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAI 205 (398)
Q Consensus 128 ~~g~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 205 (398)
............+..++.. .++ . ...+.....+.......+..+.+.-.|...+.+.....-.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~l 154 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPG------L-----PSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIAL 154 (478)
T ss_pred HHHHHHhhhhhhhhhhcccccccc------c-----cccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHh
Confidence 5555555555555544222 111 0 00010000011111111122222223333443333222211111
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC----------cccc-cc--ccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-c
Q 015927 206 VFVVITAGVAIVKTIDGSISMP----------CLLP-EI--SKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-Q 271 (398)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~----------~~~p-~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~ 271 (398)
+..++ ..+ ......++.... +..| +. .....+.++..++....++|.|.+......+|.|||+ .
T Consensus 155 i~~ii-~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~ 232 (478)
T PF00324_consen 155 IAFII-VGV-IILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKT 232 (478)
T ss_pred hhhhh-hcc-cccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhh
Confidence 11111 110 011111111111 0111 00 0112367899999999999999999999999999999 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 015927 272 IKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 272 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
.+|+...+.....++|.......-...+.+
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 999999999999999999877766665543
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.03 E-value=0.017 Score=57.54 Aligned_cols=217 Identities=9% Similarity=0.005 Sum_probs=95.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHH-HHHHHHHHHHHHhhccccc---
Q 015927 69 LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIV-VNNLGMLVVYMIIIGDVLS--- 144 (398)
Q Consensus 69 ~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~~~~~~~l~--- 144 (398)
.++..++...++-.++...-..+..+...++ ..++.-++|..||++|.++..+... +...|=........++.+.
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l 135 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILI 135 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444443334444444444 5678889999999999877777663 3433333333333333332
Q ss_pred -cccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015927 145 -GAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGS 223 (398)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (398)
.+++...+. ++.++....+....+..++..++..++.. ...+.++++..++..+..+.++........+. +.
T Consensus 136 ~~i~~~~~~~----~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g~ 208 (484)
T PRK11375 136 GKIWPGFLTL----GGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--GI 208 (484)
T ss_pred HHhccccccc----ccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 222211000 00000001111222222222234444433 23344444444443222222222222222221 11
Q ss_pred CCCCccccc--cccchhhhhhhhhhhhhhhhhh-cccchhHHHhhcCCccchhHHHHHHHHHHHHHHHHHHhH
Q 015927 224 ISMPCLLPE--ISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFF 293 (398)
Q Consensus 224 ~~~~~~~p~--~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 293 (398)
.+.....|. .........+..++...+-++. .-.+.|...|..|++++-.+....+..+...+...+|+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~ 281 (484)
T PRK11375 209 GPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVC 281 (484)
T ss_pred chhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 0111123444455544444454 455889999999988865555555666665555444443
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.04 Score=53.37 Aligned_cols=175 Identities=10% Similarity=0.052 Sum_probs=98.0
Q ss_pred hcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHH
Q 015927 98 ASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTT 177 (398)
Q Consensus 98 ~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (398)
+++..++ .++|+.||.++.++..+.+.+.+.|-...-.+..++.... . ..+ +..+..++.
T Consensus 78 ~~Glpqm-i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------------~---~~~--~~~~~ili~ 137 (442)
T COG1457 78 RTGLPQM-ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--------------G---TGL--PVWAGILII 137 (442)
T ss_pred ccCCChh-eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------------C---CCC--cHHHHHHHH
Confidence 3333333 4568999999999999999999999988888888875311 0 001 111112222
Q ss_pred HHHhhc--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccccccchhhhhhhhhhhhhhhhhh
Q 015927 178 LFVFLP--LISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTID-GSISMPCLLPEISKQASFWKLFTTFPVLVTAYI 254 (398)
Q Consensus 178 ~~~~~p--l~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~ 254 (398)
..++.. +.-.|.++.+++.+..-..+...+. .+...+ .........+ ...+..++..+++...-.+.
T Consensus 138 g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l-------~~~~~~~~~~~~~~~~~---~~~~~~~fl~a~slv~g~~~ 207 (442)
T COG1457 138 GVLMTLVTIFGYRALHKLERIAVPLLLLLFLYL-------LALLFRSKGGLDALWVK---GPTSPLSFLSALSLVIGSFA 207 (442)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccceeecc---CCCcchhHHHHHHHHHHHHH
Confidence 222222 2336667777777666553222211 122222 1111111111 12334444555544433333
Q ss_pred -cccchhHHHhhcCCcc--chhHHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 015927 255 -CHHNIHPIENELKDPT--QIKSIVRTSITLCSTVYITTSFFGLLLFGDRT 302 (398)
Q Consensus 255 -~~~~i~~i~~~m~~~~--~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 302 (398)
.-.....+.+.+|+|+ |.-.....+......+-...|...-.+-|+..
T Consensus 208 sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 208 SWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4556667888899888 55556666666777777777877777777765
No 59
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.70 E-value=0.023 Score=55.34 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=66.7
Q ss_pred CCCCcHHHHHHHHHHHHHhh-hhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 015927 38 IDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (398)
.|+.+++...+++..+.+|+ .+++.|....+.|+...+ ..+............+.+-.++.+..|..|.-++-+|++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence 46778888888888888776 566789888888875322 2233333334444555666668899999999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 117 --RALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 117 --~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+.+..+..++.........+...+..+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~ 112 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALL 112 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccch
Confidence 666655566666666666666666665
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.70 E-value=0.07 Score=53.27 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=66.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhh-hhhhHHHHHHHhCHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMI---VLVGWLTESSIDMIMRFSRASKSATYSGVVADA 111 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~~~l---~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~ 111 (398)
...|+.+++...+.+..+.+|+ ..++.|....+.|+..-+... ....+...+-+..+.+..++.+..|..|+-++-
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~R 117 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRAR 117 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3457778888888888877665 666788777777764211111 111111122334445556778999999999999
Q ss_pred cChhH-HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 112 FGGAG-RALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 112 ~G~~~-~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
||++. +.+..+...+..++.....+...+..+
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l 150 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLL 150 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98654 555555555555555555555556555
No 61
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.66 E-value=0.064 Score=51.81 Aligned_cols=231 Identities=14% Similarity=0.107 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHH
Q 015927 43 FSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQV 122 (398)
Q Consensus 43 ~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~ 122 (398)
+....+++.+-..|+.... .++..+++..++-.++...-.-+......|+ ..++.-++|..||++|.++..+
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~ 78 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSL 78 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHH
Confidence 3444455555555543211 4455555555544444443333333444444 5578888999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccc--ccccchhhhhhHHH
Q 015927 123 CIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLIS--FRRVDSLRYTSALS 200 (398)
Q Consensus 123 ~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s~~~ 200 (398)
...+...|=-.......++.++.+... .++.. .......+ ..++..+.+. +|.++.+.+++...
T Consensus 79 l~~i~~igW~~v~~~~gg~~l~~~~~~----------~~~~~---~~~~~~~i-~~~l~~~~~~~G~~~i~~~~~~~~~~ 144 (386)
T TIGR02358 79 LNLLQLVGWTAVMIIVGAKAASLLGGR----------LFGEE---SPMLWILI-VGILVTLWLLSGPLAFVWLNNWSVWL 144 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCC---chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777766677766544321 11111 01111121 1222333222 44444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhh-hhcccchhHHHhhcCCccchhHHHHHH
Q 015927 201 VGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTA-YICHHNIHPIENELKDPTQIKSIVRTS 279 (398)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~~~~~~~~~~~~ 279 (398)
+ .+..+........ +.+.+. ...+ + .+ ..+..++....-. -......+...|..|+|+|.......+
T Consensus 145 ~---~i~~~~~~~~~~~---~~~~~~-~~~~--~--~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G 212 (386)
T TIGR02358 145 L---LIATLWLLVVVFS---KADLSE-LWNR--A--GD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLG 212 (386)
T ss_pred H---HHHHHHHHHHHHh---ccchhh-hcCC--C--CC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHH
Confidence 2 1111111111111 111111 1111 1 11 2222223222211 123345788999988888777788888
Q ss_pred HHHHHHHHHHHHhHHhhhcCCCchhhhh
Q 015927 280 ITLCSTVYITTSFFGLLLFGDRTLDDVL 307 (398)
Q Consensus 280 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il 307 (398)
..+...+-..+|.....+.++....++.
T Consensus 213 ~~i~~~~~~~~G~~~~~a~~~~d~~~~~ 240 (386)
T TIGR02358 213 YFIGSCWMYFLGLAVTLATGQTDIISIL 240 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888888888888777777665444444
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.50 E-value=0.13 Score=51.24 Aligned_cols=108 Identities=16% Similarity=0.094 Sum_probs=69.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhh-hhHHHHHHHhCHHHHHHHHH--HHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIV--LVGWL-TESSIDMIMRFSRASKSATYSGVVADA 111 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~g~~~l~--~~~~l-~~~t~~~l~~~~~~~~~~~y~~l~~~~ 111 (398)
...|+.+++.....+..+.+|++. ++.|-...+.|+........ ..+.+ ..+-...+.+..++.+..|..|.-++-
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~R 116 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKAR 116 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 345788999999999999888765 45787777778642111111 11111 111123344445677899999999999
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 112 FGGA-GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 112 ~G~~-~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
||++ .+++..+..++.+++.....+...+..+
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l 149 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLI 149 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9955 4677777777777766666666566555
No 63
>PRK12488 acetate permease; Provisional
Probab=97.49 E-value=0.15 Score=51.77 Aligned_cols=106 Identities=17% Similarity=0.070 Sum_probs=68.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhh-hhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 015927 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG-G 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G-~ 114 (398)
..|+.+++...+.+..+.++++ .++.|-.....|+..-+. .+-..+-......++.+-.++.+..|..|.-++-|| |
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~-~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~ 143 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLY-ALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQG 143 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCC
Confidence 4578899999999999877766 467998888888742211 111111111122345555567788999999988887 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+.+.+..+..++....-....+...+..+
T Consensus 144 ~~r~laai~~i~~~~~yl~~q~~g~g~il 172 (549)
T PRK12488 144 PVRLTAAFGTLTVVLMYLVAQMVGAGKLI 172 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766666555555555555555
No 64
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.49 E-value=0.0041 Score=60.10 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred CCCCcHHHHHHHHHHHHHhhh-hhhHHHHHHHhCHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCCCCH-----HHH
Q 015927 38 IDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESS----IDMIMRFSRASKSATY-----SGV 107 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~~~l~~~~~l~~~t----~~~l~~~~~~~~~~~y-----~~l 107 (398)
+++.|.+|+.+....+++|.| ++.+|.+.+..| ..+++-+.+.+++..-+ ..+-.+..+++++.+| ..+
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 356999999999999999998 999999977666 44533344444333333 3333333333344447 889
Q ss_pred HHHHcChhHHHHHHHH
Q 015927 108 VADAFGGAGRALLQVC 123 (398)
Q Consensus 108 ~~~~~G~~~~~i~~~~ 123 (398)
-+...|||...+..++
T Consensus 123 ~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHhCccHHHHHHHHH
Confidence 8888889888777776
No 65
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.39 E-value=0.013 Score=54.80 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCHHHHHHHHcChh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIM-RFSRASKSATYSGVVADAFGGA 115 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~-~~~~~~~~~~y~~l~~~~~G~~ 115 (398)
+.-..+.+..+.+=..++-|+|...=|..-..-||+++.+-+++-+++.--...+.. -...||+.+|..|++++..||+
T Consensus 48 DYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 48 DYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKR 127 (376)
T ss_pred CCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHH
Confidence 345677788899999999999999999988999999998877776655554444443 3456899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+|.+..+..++.+......+....++.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888888877766
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=97.39 E-value=0.15 Score=49.51 Aligned_cols=205 Identities=10% Similarity=0.107 Sum_probs=97.8
Q ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 015927 68 ELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (398)
Q Consensus 68 ~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (398)
..++..+++..++-..+...-..+......|+ ..++.-++|..||++|.++..+...+...|=........+..++..
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~- 115 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA- 115 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 34555566555555444443344444444444 5678888999999999998888777766654444444444433221
Q ss_pred ccCccCCCcchhhhccccccchhHHHHHHHHHHhhccc--cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015927 148 LNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI--SFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSIS 225 (398)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (398)
.+. ..... ..+ ..++..+.. -+|.+++++......+ .+..+........+ .++..+
T Consensus 116 -------------~~~---~~~~~-~~i-~~~l~~~~~~~G~~~i~~~~~~~~p~~---~~~~~~~~~~~~~~-~~g~~~ 173 (404)
T PRK11017 116 -------------TGL---DINLL-IVL-SGLLMTVTAYFGISALTILSRIAVPAI---ALLGGYSVWLAVND-VGGLDG 173 (404)
T ss_pred -------------hCC---CHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-cCchhh
Confidence 111 11111 121 122333333 2455555554443332 11111111111111 111001
Q ss_pred CCccccccccchhhhhhhhhhhhhhhhh-hcccchhHHHhhcCCccchhHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 015927 226 MPCLLPEISKQASFWKLFTTFPVLVTAY-ICHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFFGLLLFGDR 301 (398)
Q Consensus 226 ~~~~~p~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 301 (398)
.....| .+...+..++...+-.+ ..-.+.+...|..|++++-......+..+...+-..+|...-...|+.
T Consensus 174 ~~~~~~-----~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 174 LKAIVP-----AEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred hhcCCC-----CCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 001111 11123444444433333 346688889999888775444444555555555566666555556554
No 67
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.33 E-value=0.21 Score=49.92 Aligned_cols=107 Identities=18% Similarity=0.100 Sum_probs=83.5
Q ss_pred CCCCCcHHHHHHHHHHHHHh-hhhhhHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 015927 37 GIDGASFSGAVFNLSTTIVG-AGIMALPATVKELGLIPGLIMIV---LVGWLTESSIDMIMRFSRASKSATYSGVVADAF 112 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~~~~~~G~~~g~~~l~---~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (398)
..|+.+.+-.......+.++ ...+++|......|+...+.... .....-.+-...+.+..++++..|..|.-++-|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 45666666777888888887 88999999999999876555554 333444444555555565668999999999999
Q ss_pred C-hhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 113 G-GAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 113 G-~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
| |+.+.+..+...+....-+...+...+..+
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~ 147 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLL 147 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999998888888888776
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.26 E-value=0.19 Score=48.09 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhhhHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHH
Q 015927 48 FNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCI 124 (398)
Q Consensus 48 ~~l~~~~iG~GiL~lP~~~~-~~G--~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~ 124 (398)
+.+..-.+|+|.|-.|-... ++| |..+.+..++.++..-..+.+ +..+. ..+|.++.++.- |+...+....+
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~-gG~~~~l~~~~g-~~f~~lf~~~~ 76 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALV-GGGYDSLSARIG-KVFGILFTVIL 76 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeec-CCCHHHHHHHhC-hHHHHHHHHHH
Confidence 34667789999999987665 444 677777777777666555444 22233 358999965554 55555544443
Q ss_pred H
Q 015927 125 V 125 (398)
Q Consensus 125 ~ 125 (398)
.
T Consensus 77 ~ 77 (378)
T TIGR00796 77 Y 77 (378)
T ss_pred H
Confidence 3
No 69
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.03 E-value=0.02 Score=57.14 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhhhhcccchhHHHhhcCCcc-chhHHHHHHHHHHHHHHHHHHhHHh
Q 015927 241 KLFTTFPVLVTAYICHHNIHPIENELKDPT-QIKSIVRTSITLCSTVYITTSFFGL 295 (398)
Q Consensus 241 ~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~~~~~~~~~~~~~~~Y~~~g~~gy 295 (398)
++-..++++.-+-.+.-.--..-.|+|+|+ ..+|-...+...+++.|.++.++--
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 455556665555555555556778999999 7899999999999999998866543
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.97 E-value=0.53 Score=47.79 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=65.3
Q ss_pred CCCCCcHHHHHHHHHHHHHh-hhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-h
Q 015927 37 GIDGASFSGAVFNLSTTIVG-AGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG-G 114 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G-~ 114 (398)
..|+.+++...+.+..+.++ ...++.|-.....|+-.-+. .+-..+.......++.+-.++.+..|..|..++-|| |
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~-~~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~ 143 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIY-SLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQR 143 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCc
Confidence 34677778877788887665 56788998887888642221 111111111223445565667788999999998887 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
..+.+..+..++....-....+...+..+
T Consensus 144 ~~r~l~ai~~i~~~~~yl~~ql~g~g~il 172 (549)
T TIGR02711 144 PIRILSACGSLVVVALYLIAQMVGAGKLI 172 (549)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56766666555554444445555555554
No 71
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.43 Score=48.59 Aligned_cols=103 Identities=12% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHcCh
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADAFGG 114 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~---~~~~y~~l~~~~~G~ 114 (398)
+-++......-.+..+.|.-++- |-+....+|...+.++.++|++.+..|..-+...+... ..-+|.-+.| .+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISR-sLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISR-SLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEec-ccCc
Confidence 44556666677788888876543 78899999999999999999999998887776655432 4567877744 4445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015927 115 AGRALLQVCIVVNNLGMLVVYMIIIGDV 142 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~g~~~~y~~~~~~~ 142 (398)
-.+-.+.++..+-.-.+..+|+.-.-+.
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi 219 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEI 219 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHH
Confidence 4444455555555555555566554443
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.63 E-value=0.76 Score=44.75 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=71.2
Q ss_pred CCCCcHHHHHHHHHHHHHhh-hhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh-h
Q 015927 38 IDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG-A 115 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 115 (398)
.|+.+++...+.+..+.+++ ..++.|....+.|+.. +...+..........++..+..++.+..|..|.-+.-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 35667777777777776665 4566888777788643 2222222333334455666666677899999999999998 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (398)
.+.+..+..++..+......+...+..++
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~ 109 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIE 109 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666676677777777777777776663
No 73
>PRK15015 carbon starvation protein A; Provisional
Probab=96.49 E-value=0.22 Score=50.11 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCHHHHHHHHcChhHHH
Q 015927 40 GASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIM-RFSRASKSATYSGVVADAFGGAGRA 118 (398)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~-~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (398)
..+.+--+-+=..++-|+|.+.=|..-.+.||.++.+-+++-.++.---..+.. -...|++.+|..|++++..||+++.
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGV 161 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHH
Confidence 344455677888999999999999999999999998877765554443333332 3456889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 119 LLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 119 i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+..+..++.+......+..+..+.+
T Consensus 162 lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777777776666655
No 74
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.36 E-value=0.32 Score=47.92 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=84.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCHHHHHHHHcChh
Q 015927 37 GIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIM-RFSRASKSATYSGVVADAFGGA 115 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~-~~~~~~~~~~y~~l~~~~~G~~ 115 (398)
+.-..+.+..+-+=..++-|+|.+.=|.--++.||.++.+-+++-+++.---...++ -...|++.+|..|++++.+|+.
T Consensus 48 DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~ 127 (575)
T COG1966 48 DYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRT 127 (575)
T ss_pred ccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhh
Confidence 344567777888999999999999999999999999998877665555543333332 2345889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
.+.+..+...+........+.......+
T Consensus 128 a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 128 AKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877777766666666655
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.32 E-value=0.093 Score=51.69 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhhhHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChh
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGA 115 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~--~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~ 115 (398)
+|+.+.++-+..-.+..+....+.+-..... .++..+++.+++-.++...-.-+......|+ ..+...++|..||++
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~~ 84 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGYR 84 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-TT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCcc
Confidence 4455566666666666666555554444322 3455566666665555544444444544555 456777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
|..+..+...+...|=...-..+.++.+....+
T Consensus 85 Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~ 117 (440)
T PF02133_consen 85 GSKLPSLLRAISAIGWFAVNTWLGGQALAALLG 117 (440)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998888888777777777777765543
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.32 E-value=0.42 Score=46.10 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=42.0
Q ss_pred cccccchhhhhhhhhhhhhhhhhh-cccchhHHHhhcCCccchhHHHHHHHHHHHHHHHHHHhH
Q 015927 231 PEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSFF 293 (398)
Q Consensus 231 p~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 293 (398)
|+++.-.+...+..++|...|+.+ |-..+....+.++|+++..+........-..+=++.|+.
T Consensus 205 PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 205 PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHH
Confidence 555444445667888999999988 667777888888888887775555554444444444433
No 77
>PRK09395 actP acetate permease; Provisional
Probab=95.85 E-value=2.5 Score=43.02 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=66.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhh-hhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-
Q 015927 36 AGIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFG- 113 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G- 113 (398)
...|+.+++...+.+..+.+++ ..++.|-.....|+..-+. .+-..+.......++.+-.++.+..|+.|.-+.-||
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs 144 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQ 144 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCC
Confidence 3457788888888888887775 4567888877888743222 111111112223344555567788999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 114 GAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 114 ~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
|+.+.+..+...+.........+...+..+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il 174 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLI 174 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777666655544444444444444444
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.67 E-value=2.9 Score=42.53 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=68.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhh-hhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGA-GIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (398)
...|+.+++...+.+..+.+++ ..++.|......|+..-...+ -..........++.+-.+|.+..|..|.-++-||+
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s 107 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYS 107 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCC
Confidence 4568899999999999888855 567788877777764222221 11111122345666666778899999999999985
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 115 A-GRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 115 ~-~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+ .+.+..+...+.........+...+..+
T Consensus 108 ~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l 137 (552)
T TIGR03648 108 NTARLVAVICAIFISFTYVAGQMRGVGVVF 137 (552)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5666666655555554555555555544
No 79
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.027 Score=55.55 Aligned_cols=222 Identities=15% Similarity=0.182 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHHHHHHHHcChhHHHHHHH
Q 015927 46 AVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRAS---KSATYSGVVADAFGGAGRALLQV 122 (398)
Q Consensus 46 ~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~---~~~~y~~l~~~~~G~~~~~i~~~ 122 (398)
+..++.+-|+ .|-+++...++|...+++++.++..++..|..=-.....|. ..-.|.-+ .+.+|+-.+--+.+
T Consensus 40 cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yfli-s~slg~efggsigi 115 (643)
T KOG2083|consen 40 CMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLI-SRSLGPEFGGSIGI 115 (643)
T ss_pred hhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEE-EecccccccchhHH
Confidence 3444555444 56689999999999999988888877776654332222221 23344444 34445554445555
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhccc--cccccchhhhhhHHH
Q 015927 123 CIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLI--SFRRVDSLRYTSALS 200 (398)
Q Consensus 123 ~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--~~~~l~~l~~~s~~~ 200 (398)
...+.+.-.+..|..-.+|.+..++... +.+.. +- +..++.+++..++ -.++..+++.+..+-
T Consensus 116 Iy~f~~aVa~am~~vgfaEsv~~l~~~~-----------s~~~i--~g--i~~vt~~ill~i~~ag~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 116 IYAFANAVATAMYVVGFAESVAHLFETE-----------SKEMI--DG--IGSVTVLILLAINVAGVEWEAKLQIVLLLI 180 (643)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhc-----------cHHHh--cc--hhHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 5566666678889999999886655421 11111 11 2222222333332 244444444443332
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcCCC------CCCccccccccchhhhhhhhhhhhhhhhhhcccchhHHHhhcCCcc-ch
Q 015927 201 VGLAIVFVVITAGVAIVK-TIDGSI------SMPCLLPEISKQASFWKLFTTFPVLVTAYICHHNIHPIENELKDPT-QI 272 (398)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~-~~ 272 (398)
+.+++.=.++...+. +. .-.+.. -..+.+|+.+.. ..+|..++++.=+..|.-.-..+..++++|+ ..
T Consensus 181 l~iai~~f~~gs~~~-~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~I 256 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFS-PNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGDLKDPQKAI 256 (643)
T ss_pred HHHHHHHhhhhhccC-hhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCCCCCchhhc
Confidence 211111111111000 00 000100 011222333211 2455556666666766666677889999998 78
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015927 273 KSIVRTSITLCSTVYITT 290 (398)
Q Consensus 273 ~~~~~~~~~~~~~~Y~~~ 290 (398)
++-...+......+|+.+
T Consensus 257 P~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 257 PLGALLAIGVSTLLYLIF 274 (643)
T ss_pred ccchhhhhhhhhhhhhhh
Confidence 888899999999999554
No 80
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.44 E-value=2.9 Score=41.07 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIG 140 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~ 140 (398)
..++..|++++-+||+..++..+...+...+....-..-.+
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a 132 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAA 132 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999998887766665555555555444333
No 81
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=95.39 E-value=3.3 Score=41.36 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhh-hhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hcCCCCHHHHHHH
Q 015927 37 GIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRF----SR-ASKSATYSGVVAD 110 (398)
Q Consensus 37 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~----~~-~~~~~~y~~l~~~ 110 (398)
..|+.+++...+.+..+.+++. .++.|......|+...+.. ....+........+.+- .+ |++..|..|.-++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 4577888888888888877654 5668877777787532221 11111122223333322 22 5678899999999
Q ss_pred HcChhH
Q 015927 111 AFGGAG 116 (398)
Q Consensus 111 ~~G~~~ 116 (398)
-||++.
T Consensus 113 Ryg~~~ 118 (487)
T TIGR02121 113 RFNDKS 118 (487)
T ss_pred HhCCCC
Confidence 999543
No 82
>PRK10484 putative transporter; Provisional
Probab=95.36 E-value=3.6 Score=41.56 Aligned_cols=91 Identities=8% Similarity=-0.008 Sum_probs=57.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhh-hhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (398)
-..|+.+++-..+.+..+.++++ .++.|-...+.|+....... ...+........+.+-.+|.+..|..|+-++-||+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKSGITTIPDFLEERYDK 113 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCc
Confidence 34678888888888888866655 55688777777864321111 11111112334444444567889999999999999
Q ss_pred hHHHHHHHHHHHH
Q 015927 115 AGRALLQVCIVVN 127 (398)
Q Consensus 115 ~~~~i~~~~~~~~ 127 (398)
+.+.+......+.
T Consensus 114 ~~~~~~~~~~~i~ 126 (523)
T PRK10484 114 TTRRIVSILFLIG 126 (523)
T ss_pred hhHHHHHHHHHHH
Confidence 8887766654443
No 83
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.01 E-value=4 Score=40.17 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHcChhHH---HHHHHHHHHHHHHHHHHHHHhhcc-ccccccccCccCCCcchhhhccccccchhHHHHH
Q 015927 100 KSATYSGVVADAFGGAGR---ALLQVCIVVNNLGMLVVYMIIIGD-VLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLL 175 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~---~i~~~~~~~~~~g~~~~y~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (398)
-+.+|..++|..||-++. .+....+.+.-+|.-.---...-+ .+..+++.. +..+-..+..+ .+...++ ..
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~-~~~~~~~~~lg---~tt~~~i-~F 175 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSL-LIPNTLSPLLG---LTTLELI-CF 175 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-ccCCccccccC---CcHHHHH-HH
Confidence 467999999999988776 455555555555543211111111 111122110 00000011111 1112221 11
Q ss_pred HHHHHhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCcccc-c-cccchhhhhhhhhhhhhhhh
Q 015927 176 TTLFVFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSI-SMPCLLP-E-ISKQASFWKLFTTFPVLVTA 252 (398)
Q Consensus 176 ~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p-~-~~~~~~~~~~~~~~~~~~fa 252 (398)
+..-++-.++..+..+++++.-.++-.+..+.+...+ ++-..+... ......| + .......+.+...+...+-.
T Consensus 176 ~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~---Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~ 252 (497)
T COG1953 176 FIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLA---IWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGF 252 (497)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHH---HHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 2222333344556667777766666533333333333 333322211 1111112 1 11122333444444333333
Q ss_pred hh-cccchhHHHhhcCCccchhHHHHHHHHHHHHHHHH----HHhHHhhhcCCC--chhhhhhcch
Q 015927 253 YI-CHHNIHPIENELKDPTQIKSIVRTSITLCSTVYIT----TSFFGLLLFGDR--TLDDVLANFD 311 (398)
Q Consensus 253 f~-~~~~i~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~----~g~~gy~~fg~~--~~~~il~~~~ 311 (398)
|. ...|+|...+.-|+++.-..--.++..+.+.+..+ .+...+..||+. .+.|++..++
T Consensus 253 ~Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 253 WATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 32 56788999999888773232233444444444444 445566779988 6678888887
No 84
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.99 E-value=7.7 Score=39.16 Aligned_cols=110 Identities=11% Similarity=0.013 Sum_probs=54.6
Q ss_pred HhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCC--Cccccccccchhhhhhhhhhhhhhhhhh-c
Q 015927 180 VFLPLISFRRVDSLRYTSALSVGLAIVFVVITAGVAIVKTI-DGSISM--PCLLPEISKQASFWKLFTTFPVLVTAYI-C 255 (398)
Q Consensus 180 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~faf~-~ 255 (398)
++.-++..|.+++...+......+..+.+++.+ .+... ++..+. .-..|+++.-.+..-+..+++...|+.+ +
T Consensus 189 ~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~---ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig 265 (523)
T PF00209_consen 189 LIVFFGIWKGIESIGKVMYPTLLLPFVLLIILL---IRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIG 265 (523)
T ss_dssp HHHTTTTTTTHHHHHHHHHHHHH---HHHHHHH---HHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHheEeccccccchhhhhhhhhhEEEEEEE---EEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCC
Confidence 444556677777776666555422112111111 11111 111100 0012333333333445788889999998 5
Q ss_pred ccchhHHHhhcCCccchhHHHHHHHHHHHHHHHHHHh
Q 015927 256 HHNIHPIENELKDPTQIKSIVRTSITLCSTVYITTSF 292 (398)
Q Consensus 256 ~~~i~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~g~ 292 (398)
.+.+...-+.++++++..|........-..+.++.|.
T Consensus 266 ~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 266 FGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp SSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred cceEEEEcCcCCCCccccccceEEEcCchhhhHhHHH
Confidence 6667777777777777777665555555555544443
No 85
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.87 E-value=4.1 Score=39.77 Aligned_cols=268 Identities=13% Similarity=0.036 Sum_probs=126.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMALPATVKELG--LIPGLIMIVLVGWLTESSIDMIMRFSRA--SKSATYSGVVADA 111 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G--~~~g~~~l~~~~~l~~~t~~~l~~~~~~--~~~~~y~~l~~~~ 111 (398)
.++|.=++++-...=....++.+..-+...--+.| |.-++++..+--.+. ...++-..+. +=+.++.-..|..
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~---~~f~~lns~~G~~yhIsFpv~sR~s 127 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFT---AIFLVLNSRPGSDYHISFPVLSRSS 127 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHH---HHHHHHccCCCcccccceeeeeeee
Confidence 44567788888877777888888777777777777 555555444332222 2222221111 1244666666777
Q ss_pred cChhHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccccc
Q 015927 112 FGGAGR---ALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFR 188 (398)
Q Consensus 112 ~G~~~~---~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 188 (398)
||-++. .+..+.+.+..+|... -+.++.++.+++...++..-+.+.+++...+...++-.++.=++-.|+.+ .
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~-~ 203 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW-F 203 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee-c
Confidence 776664 4444555444444321 12233332222211111111133333333333333333222234444444 3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccchhhhhhhhhhhhhhhhhh-cccchhHHHhhcC
Q 015927 189 RVDSLRYTSALSVGLAIVFVVITAGVAIVKTIDGSISMPCLLPEISKQASFWKLFTTFPVLVTAYI-CHHNIHPIENELK 267 (398)
Q Consensus 189 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~ 267 (398)
..++++++-...-+.+.+.+.-.++.. .+-.+|..+.........+..-.+.+..++...+-.|. ...|.|...+--|
T Consensus 204 ~p~~ir~lf~~ka~~t~fA~~g~LIw~-l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~k 282 (572)
T KOG2466|consen 204 PPYKIRHLFTWKAVLTPFAAFGFLIWL-LKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAK 282 (572)
T ss_pred cHHHhhhHHHHHHhhhHHHHHHHHHHH-HHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcC
Confidence 455666665555433332222222222 22233311111111122222334445444444443333 5677888888888
Q ss_pred CccchhHHHHHHHHHHHHH----HHHHHhHHhhhcCCC--chhhhhhcch
Q 015927 268 DPTQIKSIVRTSITLCSTV----YITTSFFGLLLFGDR--TLDDVLANFD 311 (398)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~----Y~~~g~~gy~~fg~~--~~~~il~~~~ 311 (398)
+|.+-...-.++..+.+.+ =++.+..++..||.+ .+-+++.++-
T Consensus 283 sp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 283 SPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred CCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 8864333333333333333 344555677789987 4556666554
No 86
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=93.22 E-value=8.8 Score=37.34 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
...+..|.+++.++|+..++..+...+....++++.....+--+
T Consensus 75 TG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial 118 (416)
T COG1914 75 TGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIAL 118 (416)
T ss_pred hCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999988888888888888877666555
No 87
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=90.39 E-value=21 Score=35.83 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=58.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhh-hhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCCCHHHHHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGI-MALPATVKELGLIPGLIMIVLVGWLTESSIDM-----IMRFSRASKSATYSGVVA 109 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~-----l~~~~~~~~~~~y~~l~~ 109 (398)
-..|+.+++...+.+..+.+++.. ++.|....+.|+..-+..+ ...+.......+ .....++.+..|..|.-+
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 346788888888888887777665 4588888888875322111 111111111112 122223457889999999
Q ss_pred HHcChhH---HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 110 DAFGGAG---RALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 110 ~~~G~~~---~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
+-||++. +.+..+...+....-+..-+...+..+
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l 152 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLF 152 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998643 334444444443333333333344444
No 88
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=90.26 E-value=19 Score=35.05 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=40.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIM 93 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~ 93 (398)
+++++.|.+|+...-+.+.+|+|=.+ ...+....| ..+++-+.+.+++..-+-+.-.
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~ 71 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEV 71 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999654 777776554 4466666666666665544433
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=90.18 E-value=3.8 Score=39.35 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (398)
+..-..+++++.+|++|+.+..+.+.+.|+.+++......+|.++..
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~ 299 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKL 299 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667789999999999999999999999999999999999988544
No 90
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=88.90 E-value=25 Score=34.56 Aligned_cols=185 Identities=13% Similarity=0.155 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccch
Q 015927 91 MIMRFSRASKSATYSGVVADAF-GGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTR 169 (398)
Q Consensus 91 ~l~~~~~~~~~~~y~~l~~~~~-G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (398)
++.+..++.++.++.|....-+ -++.|++..+.-++..+.-.++.+.-.+..+..+ ++.+. ..
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l--------------~gv~~-~v- 156 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLL--------------LGVPY-HV- 156 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------hCCCc-ee-
Confidence 3444556668999999765555 5667777766666666655666666666655332 22211 11
Q ss_pred hHHHHHHHHHHhhccccccccch---hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCccccc--cccc
Q 015927 170 FTLLLLTTLFVFLPLISFRRVDS---LRYTSALSVGLAIVFVVITAGVAIVKTIDGSIS--------MPCLLPE--ISKQ 236 (398)
Q Consensus 170 ~~~~~~~~~~~~~pl~~~~~l~~---l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~--~~~~ 236 (398)
-.++...++.......-++. .+.+-.+-++.+.+++.+.+ ..+......+ .+.+.|. .+..
T Consensus 157 ---gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pG 230 (529)
T COG4147 157 ---GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMI---MWKLGGNPNPLFAEAVTVHPKDDGSDIMEPG 230 (529)
T ss_pred ---ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHcCCcchHHHHHhhcCcccCcccccCCC
Confidence 11122223333334344444 44444433333333333222 2232111100 0000000 0001
Q ss_pred hhhhhhhhhhhhhhhhhhcccchhHHHhh-c--CCccchhHHHHHHHHHHHHHHHHHHhHHhhh
Q 015927 237 ASFWKLFTTFPVLVTAYICHHNIHPIENE-L--KDPTQIKSIVRTSITLCSTVYITTSFFGLLL 297 (398)
Q Consensus 237 ~~~~~~~~~~~~~~faf~~~~~i~~i~~~-m--~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 297 (398)
....+..+.++...--..+...+|.+.-. - .+-++-|+.+.++......+|+..-..|+.+
T Consensus 231 l~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 231 LLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred CcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223344444444444466666654322 1 2233678899999999999999988877764
No 91
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=86.44 E-value=5 Score=39.08 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (398)
+..-..+++++.+|+.|..+..+.+.+.|+-+++.-....+|..++.+
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~ 306 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF 306 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677889999999999999999999999999999999999985443
No 92
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=84.04 E-value=52 Score=33.55 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhc
Q 015927 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFG 162 (398)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (398)
...+.+..+...+++++.++.+......+++....+...+..+.... .++.++++++
T Consensus 298 ~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ama-----rDGlLP~~fa 354 (557)
T TIGR00906 298 DAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMA-----RDGLLFKWLA 354 (557)
T ss_pred CcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccHHHh
Confidence 34455555554456777777777777777666666665555554332 2344455554
No 93
>TIGR00909 2A0306 amino acid transporter.
Probab=81.50 E-value=30 Score=33.70 Aligned_cols=48 Identities=21% Similarity=0.072 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
.....+..++..|+++..+..+...+..++...+.....+..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 263 TAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred CcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677888888999999999999999999998888888877755443
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=76.93 E-value=78 Score=31.02 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHHHhhhhhhHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHH
Q 015927 41 ASFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (398)
Q Consensus 41 ~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G--~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (398)
......-+.+..-..|+|=|-.|-... ++| |+++.+-.++.++.--.-+.+ +..+.+. ++++++++.-.+.+.
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi---a~~~~~~-~~~~l~~~v~~~f~~ 78 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI---AVAKSGG-GIEDLASRVGPKFAL 78 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHhhcCC-CHHHHhcccCcHHHH
Confidence 345566788889999999999987776 444 777777777766554433322 2223333 899998877644444
Q ss_pred HH
Q 015927 118 AL 119 (398)
Q Consensus 118 ~i 119 (398)
.+
T Consensus 79 if 80 (427)
T PF05525_consen 79 IF 80 (427)
T ss_pred HH
Confidence 33
No 95
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=74.53 E-value=90 Score=30.58 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=81.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCC-----CHH
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAGIMA-LPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSR----ASKSA-----TYS 105 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~----~~~~~-----~y~ 105 (398)
++++..|.+|+...-..+.+|+|=.+ ..-+.+..| ..++.-+.+.+++-.-|.+.-..... ++++. ...
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 45788999999999999999999655 777776555 33555555555555544433322222 11112 333
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHH--HHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhc
Q 015927 106 GVVADAFGGAGRALLQVCIVVNNLG--MLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLP 183 (398)
Q Consensus 106 ~l~~~~~G~~~~~i~~~~~~~~~~g--~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 183 (398)
-+.+..-.||...++.+..++ .+| ........+++.+ ++.++ ...+...+... ++..
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~-afg~i~n~vQ~NsIa~a~--------------~~af~-----~~~~~~gi~la-~l~~ 195 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIA-AFGFIGNGVQSNSIASAL--------------ANAFG-----IPPLVTGIVLA-LLVA 195 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHH-HHHhhcchhhHHHHHHHH--------------HHhcC-----CcHHHHHHHHH-HHHH
Confidence 443333345555555533333 333 2333333344433 22222 22333333333 3333
Q ss_pred cccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHH
Q 015927 184 LISFRRVDSLRYTSALSVG-LAIVFVVITAGVAIVK 218 (398)
Q Consensus 184 l~~~~~l~~l~~~s~~~~~-~~~~~~~~~~~~~~~~ 218 (398)
+....-+++...++..-+. .++++++.++.+...+
T Consensus 196 ~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n 231 (452)
T COG1115 196 LVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLN 231 (452)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555544333 3566666655554433
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=70.53 E-value=45 Score=32.72 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015927 102 ATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (398)
Q Consensus 102 ~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (398)
.-.....++.+|++++.+..+.+.+.|+-+++.-....+|.+++
T Consensus 265 ~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 265 AILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678889999999999999999999999999999998843
No 97
>COG4709 Predicted membrane protein [Function unknown]
Probab=62.95 E-value=96 Score=26.41 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=32.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015927 35 EAGIDGASFSGAVFNLSTTIVGAGIMALPATVK-ELGLIPGLIMIVLVGWLTESSIDMIMRFSR 97 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~ 97 (398)
..++...+..++..+++ |.|+++.|...- ..|.+..++.+.+.++...++.+.+.-..-
T Consensus 70 ~~~~~~~n~~~aii~~~----~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~agi 129 (195)
T COG4709 70 EVKPTQKNVRRAIIALI----GLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAGI 129 (195)
T ss_pred hccCcccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666554 466666665543 224444455555555555566666655443
No 98
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=62.61 E-value=1.4e+02 Score=28.29 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
..++..|..++-+||+..+...+...+........-+...+.-+
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888899999999988888887777766666665555444
No 99
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=57.61 E-value=69 Score=25.01 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhhHHHHHHHhC---HHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCCCHHHH
Q 015927 41 ASFSGAVFNLSTTIVGAGIMALPATVKELG---LIPGLIMIVLVGWLTE----SSIDMIMRFSRASKSATYSGV 107 (398)
Q Consensus 41 ~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G---~~~g~~~l~~~~~l~~----~t~~~l~~~~~~~~~~~y~~l 107 (398)
..+.+-+..+.-..+|+..+.+...+.... -..-...+++.++++. |-.+++..+.+..+..+|.++
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 346666666666777777777665544221 1111222333344433 334444555566677777765
No 100
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=53.64 E-value=40 Score=28.93 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhHHHhhhcCCC----------CchhhHHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 015927 330 IWDAFQFTGATAAVSVGFIFPAAIALRDTHGI----------ATKNDRLASWLMISLAVSSSTVAVSSDIYSIFNG 395 (398)
Q Consensus 330 ~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ 395 (398)
+..-+-+.|++.+.-+..++|+...+..+++. .+|.......+.-.+|++..+.+...|...+.++
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 34566678888888888899999999876652 3455667777788888888888888777777654
No 101
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.06 E-value=1.1e+02 Score=23.80 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVKELGLIPGLIMIVLVGWLTESS-IDMIMRFS 96 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~g~~~l~~~~~l~~~t-~~~l~~~~ 96 (398)
|..|.-.-.....-+...--++++|.+....+|.......++..++..+- ..++.+.+
T Consensus 16 rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlK 74 (111)
T TIGR03750 16 RGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLK 74 (111)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44454444444444444445667887766667877766666555555444 44454444
No 102
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=52.89 E-value=2.1e+02 Score=27.63 Aligned_cols=45 Identities=7% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 104 y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
...+.+...|+++.+++.+...+..++.....+...+..+.....
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 667888888899999999999999999999999888887765554
No 103
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=52.83 E-value=2.1e+02 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (398)
....+.+..+..+|+++..++.+...+..+++...+....+..+.
T Consensus 258 ~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~ 302 (445)
T PRK10644 258 SASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_pred CCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888999999998888877777777776666555555443
No 104
>PRK10655 potE putrescine transporter; Provisional
Probab=50.48 E-value=2.3e+02 Score=27.70 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015927 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (398)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (398)
.....+..+..+|+++..++.+...+..+++..++....+..+...
T Consensus 257 ~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~ 302 (438)
T PRK10655 257 TAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS 302 (438)
T ss_pred cchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999998888888888888888877776666655433
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=46.72 E-value=2.5e+02 Score=28.37 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=36.7
Q ss_pred cCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015927 99 SKSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (398)
Q Consensus 99 ~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (398)
+......++-....||++......+.++..+..+++-....+..+..
T Consensus 322 ~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~a 368 (550)
T KOG1289|consen 322 SLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYA 368 (550)
T ss_pred CCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34678889999999999998888888888888777777766665543
No 106
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=45.95 E-value=3.7e+02 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhh-HHHHHHHhCH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMA-LPATVKELGL 71 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~-lP~~~~~~G~ 71 (398)
.-.+..+-.+..++-++|.|=.= .|+...+.|-
T Consensus 36 ~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGG 69 (629)
T KOG3660|consen 36 NWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGG 69 (629)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 34488888999999999998655 8998887764
No 107
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=44.36 E-value=3.1e+02 Score=26.74 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 015927 100 KSATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSG 145 (398)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (398)
....+.+..++.+|+++..++++...+..+++..+.....++....
T Consensus 254 ~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~ 299 (435)
T PRK10435 254 SGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVR 299 (435)
T ss_pred CCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999988877777777776666666655543
No 108
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=43.16 E-value=3.9e+02 Score=27.44 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhh-hHHHHHHHhC-H---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHc
Q 015927 38 IDGASFSGAVFNLSTTIVGAGIM-ALPATVKELG-L---IPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAF 112 (398)
Q Consensus 38 ~~~~s~~~~~~~l~~~~iG~GiL-~lP~~~~~~G-~---~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~ 112 (398)
+.-.+..+.....++..++.|=. -.||-..+.| + ++=.+++++.|+=..|-=..+.+.++.....-+..+|-..-
T Consensus 79 ~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~ 158 (629)
T KOG3659|consen 79 PTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALK 158 (629)
T ss_pred CcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhc
Confidence 33445666777777777776633 3677666443 3 44455555555554444444444444444455556655554
Q ss_pred ChhHHHHHHHHHHHHHH
Q 015927 113 GGAGRALLQVCIVVNNL 129 (398)
Q Consensus 113 G~~~~~i~~~~~~~~~~ 129 (398)
| .+.-++.++.+...+
T Consensus 159 G-igy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 159 G-IGYAICLIAFFVGLY 174 (629)
T ss_pred C-CchhhhHHHHHHHHH
Confidence 4 455555555555444
No 109
>PRK09950 putative transporter; Provisional
Probab=42.36 E-value=3e+02 Score=27.71 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhH----HHHHHHh---C--------HHHHHHHHHHHHHHHHHHHHHHH-----H-HH-
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMAL----PATVKEL---G--------LIPGLIMIVLVGWLTESSIDMIM-----R-FS- 96 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~l----P~~~~~~---G--------~~~g~~~l~~~~~l~~~t~~~l~-----~-~~- 96 (398)
.+-|.++-+.-+..+-+|+|++.- |....+. | .-.+.....+=+.+..++.+.+. . ..
T Consensus 82 PefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~ 161 (506)
T PRK09950 82 PEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHV 161 (506)
T ss_pred CCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 345555566677788888888754 3222211 1 11122222332333333333322 2 11
Q ss_pred hhcCCCCHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHH
Q 015927 97 RASKSATYSGVVADAFGGA----GRALLQVCIVVNNLGMLVVYMI 137 (398)
Q Consensus 97 ~~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~~~y~~ 137 (398)
++.+..+.++.++-.+|++ .+.++|+..++...+....=+-
T Consensus 162 rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLG 206 (506)
T PRK09950 162 RKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLV 206 (506)
T ss_pred hcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3446678999999999854 3456666665555544433333
No 110
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=42.24 E-value=3e+02 Score=27.31 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhH----HHHHHHh---C---------HHHHHHHHHHHHHHHHHHHHHHHHH------Hh
Q 015927 40 GASFSGAVFNLSTTIVGAGIMAL----PATVKEL---G---------LIPGLIMIVLVGWLTESSIDMIMRF------SR 97 (398)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~GiL~l----P~~~~~~---G---------~~~g~~~l~~~~~l~~~t~~~l~~~------~~ 97 (398)
+-|.++-+.-+..+-+|+|++.- |....+. | .-.+.....+=+.+..++.+.+.-. .+
T Consensus 36 efS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~r 115 (453)
T TIGR00842 36 EFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVR 115 (453)
T ss_pred CCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhee
Confidence 34555556667778888887754 3222111 1 1112222233233333333333222 13
Q ss_pred hcCCCCHHHHHHHHcChh----HHHHHHHHHHHHHHHHH
Q 015927 98 ASKSATYSGVVADAFGGA----GRALLQVCIVVNNLGML 132 (398)
Q Consensus 98 ~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~ 132 (398)
+.+..+.++.++-.+|++ .+.++|+..++...+..
T Consensus 116 k~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~ 154 (453)
T TIGR00842 116 KGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGV 154 (453)
T ss_pred cCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHH
Confidence 445678888888888754 23556655554444433
No 111
>PLN00151 potassium transporter; Provisional
Probab=41.79 E-value=4.7e+02 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHhhh
Q 015927 312 VTAALMGFIFVGANFVPSIWDAFQFTG 338 (398)
Q Consensus 312 ~~~~~~~~~~~~a~~~p~~~~i~~~~G 338 (398)
+..++++.|..+.....+-..+-+--|
T Consensus 474 vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 474 INWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 677788888888777777666655554
No 112
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=40.29 E-value=2.1e+02 Score=28.44 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 015927 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLS 144 (398)
Q Consensus 104 y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (398)
-.+.+++.+|.+. +.+.+...+..+|..-+.+.-.+..+.
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~ 314 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFY 314 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3567888899888 999999999999987766655555543
No 113
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.05 E-value=34 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 015927 274 SIVRTSITLCSTVYITTSFFGLLLFGDRT 302 (398)
Q Consensus 274 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 302 (398)
.+...++.+..++..+.|...|.+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 45566667777777777777888898653
No 114
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=38.80 E-value=1.9e+02 Score=22.74 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=38.0
Q ss_pred CCCCCCcccccccccccccccCCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHhCHH-HHHHHHHHHHHHHHHHH-HHHH
Q 015927 16 RAPLLPQAQSQNHDNLEAHEAGIDGASFSGAVFNLSTTIVGAGIMALPATVKELGLI-PGLIMIVLVGWLTESSI-DMIM 93 (398)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~-~g~~~l~~~~~l~~~t~-~~l~ 93 (398)
+-+++|+.-|.++ --.+..|.-.-.....-+.+-.-++++|.++- .||+ .+..+.++..++..+-+ .++.
T Consensus 3 ti~fLp~RLN~eP-------vV~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~ 74 (121)
T PF11990_consen 3 TIEFLPDRLNREP-------VVFRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLA 74 (121)
T ss_pred ccccchhhhcCCC-------CeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4456666655542 11345555554444444444446778898886 5655 45555555444444443 4444
Q ss_pred HH
Q 015927 94 RF 95 (398)
Q Consensus 94 ~~ 95 (398)
+.
T Consensus 75 rl 76 (121)
T PF11990_consen 75 RL 76 (121)
T ss_pred HH
Confidence 43
No 115
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=37.92 E-value=58 Score=28.80 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHh---------hhhhhhhHHHHHhhhHHHhhhcCCCCchh---hHHHHHHHHHHHHHHHH
Q 015927 315 ALMGFIFVGANFVPSIWDAFQF---------TGATAAVSVGFIFPAAIALRDTHGIATKN---DRLASWLMISLAVSSST 382 (398)
Q Consensus 315 ~~~~~~~~~a~~~p~~~~i~~~---------~G~~~~~~~~~i~P~l~~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 382 (398)
..++..+++|...+.++-++.+ -||.++.-+.++= ...+.....+.... .+|+.|+++++|.++..
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik--wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK--WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe--eeEEeecccccccccccchHHHHHHHHHHHHHHH
Confidence 3444456666666655554444 4777777776654 11111122222222 47899999999999999
Q ss_pred HhhHHHH
Q 015927 383 VAVSSDI 389 (398)
Q Consensus 383 ~~~~~~i 389 (398)
-+++.=+
T Consensus 239 r~~i~Yi 245 (262)
T KOG4812|consen 239 RGFINYI 245 (262)
T ss_pred HHHHhHH
Confidence 9887543
No 116
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=37.52 E-value=4.2e+02 Score=26.21 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 104 YSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 104 y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
..++.+..+|+++..++.+...+..+++..++....+..+.....
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999989999999998888887777655443
No 117
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=37.50 E-value=2.2e+02 Score=29.48 Aligned_cols=64 Identities=11% Similarity=-0.049 Sum_probs=42.6
Q ss_pred HHHhhhhhhHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHH
Q 015927 53 TIVGAGIMALPATV--KELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGR 117 (398)
Q Consensus 53 ~~iG~GiL~lP~~~--~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (398)
.....++......+ .+..++..++.+++..+++.-+.+...+... ++...+..+.+.++|-...
T Consensus 365 ~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g~~~p 430 (624)
T PF03169_consen 365 VSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFGLLLP 430 (624)
T ss_pred HHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHHHHHh
Confidence 44455566777777 4566766777777777777777777766665 4566677777777664443
No 118
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=36.99 E-value=4.1e+02 Score=25.93 Aligned_cols=43 Identities=5% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHcCh--hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 015927 101 SATYSGVVADAFGG--AGRALLQVCIVVNNLGMLVVYMIIIGDVL 143 (398)
Q Consensus 101 ~~~y~~l~~~~~G~--~~~~i~~~~~~~~~~g~~~~y~~~~~~~l 143 (398)
.....+..+..+|. +...++.+...+..+++..+.....+..+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l 303 (442)
T TIGR00908 259 NNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQI 303 (442)
T ss_pred cchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888874 33344444444444444444444444444
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=36.88 E-value=35 Score=21.34 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 015927 276 VRTSITLCSTVYITTSFFGLLLFGDRT 302 (398)
Q Consensus 276 ~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 302 (398)
...+..+..++-.+.|...|.+||...
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345566666777777888888898653
No 120
>CHL00020 psbN photosystem II protein N
Probab=36.37 E-value=29 Score=21.63 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 015927 275 IVRTSITLCSTVYITTSFFGLLLFGDRT 302 (398)
Q Consensus 275 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 302 (398)
+...++.+..++..+.|..-|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4455666666777777777788888653
No 121
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=35.71 E-value=4.4e+02 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=39.0
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 103 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
...+..+..+|+++..++.+...+..+++..++....++.+.....
T Consensus 265 ~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ar 310 (468)
T TIGR03810 265 SMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAK 310 (468)
T ss_pred hHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888999999999999999999999999999888887755443
No 122
>PRK11021 putative transporter; Provisional
Probab=35.31 E-value=4e+02 Score=25.66 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 015927 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGA 146 (398)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~ 146 (398)
.....+..++.+|+++..++.+...+..+++..++....+..+...
T Consensus 245 ~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ 290 (410)
T PRK11021 245 AASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQ 290 (410)
T ss_pred cccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899998888877777777777777666566655443
No 123
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=34.86 E-value=2.3e+02 Score=28.51 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=15.3
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhH
Q 015927 40 GASFSGAVFNLSTTIVGAGIMAL 62 (398)
Q Consensus 40 ~~s~~~~~~~l~~~~iG~GiL~l 62 (398)
+-+.++-..-+....+|+|++..
T Consensus 87 Efs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 87 EFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CcchhHHHHHHHHcccCceeeEe
Confidence 34555556677778888887654
No 124
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=33.06 E-value=4.9e+02 Score=25.69 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhH
Q 015927 42 SFSGAVFNLSTTIVGAGIMALPATVK-ELG--LIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAG 116 (398)
Q Consensus 42 s~~~~~~~l~~~~iG~GiL~lP~~~~-~~G--~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 116 (398)
.....-+.+..-..|+|=|-.|-... ++| |+++.+-..+.++.--.-+.+ +..+.+ .++++++++.-.+.+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgii---ava~~~-g~~~~l~~rv~~~f~ 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVV---ALAKVG-GGVDSLSTPIGKVAG 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHhhcC-CCHHHHhhhcchHHH
Confidence 56778889999999999999987776 445 776766666655433322211 112223 488899877764433
No 125
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=30.82 E-value=3e+02 Score=23.90 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015927 65 TVKELGLIPGLIMIVLVGWLTESSIDMIMRF 95 (398)
Q Consensus 65 ~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~ 95 (398)
++.....+...+...+++.+..+.+..+.+.
T Consensus 150 ~~~g~~~~~~~~~igivs~i~~~~G~~lG~~ 180 (206)
T TIGR02840 150 SLLGLNPLATSILVAVMSFIFVSLGLFLGKK 180 (206)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666667777777666553
No 126
>PRK11387 S-methylmethionine transporter; Provisional
Probab=30.49 E-value=5.4e+02 Score=25.39 Aligned_cols=47 Identities=11% Similarity=-0.006 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 015927 101 SATYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (398)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (398)
...+.+..++..|+++..++.+...+..+++....+...+..+....
T Consensus 274 ~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~a 320 (471)
T PRK11387 274 KSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLS 320 (471)
T ss_pred CChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45788888998899999999998888888888877776666664443
No 127
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=29.83 E-value=3.1e+02 Score=22.44 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=10.3
Q ss_pred HHHHHhhhHHHhhhcC
Q 015927 344 SVGFIFPAAIALRDTH 359 (398)
Q Consensus 344 ~~~~i~P~l~~l~~~~ 359 (398)
.+.-++|+++.++.+-
T Consensus 73 l~~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 73 LLLGVLPALLLWRVRI 88 (156)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445678888777543
No 128
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=29.13 E-value=2.4e+02 Score=28.88 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=51.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhh-hhhHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcCh
Q 015927 36 AGIDGASFSGAVFNLSTTIVGAG-IMALPATVKELGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGG 114 (398)
Q Consensus 36 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~~~~~~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~ 114 (398)
..-|+..++-....+..+.+|++ ++++|.-....|.-.....+......-. .++...-...+.+..+..|.-++-||+
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~-~~~~f~Pvf~~~~v~~~~eYl~~Rf~~ 120 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLL-LGWIFIPVFYRLGVTTMYEYLEKRFGG 120 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHh-hheEEEEEEEecCeeehhHHHHHHhcc
Confidence 34466677777788888887765 5678877777665432221111111000 111111112245677777777888888
Q ss_pred hHHHHHHHHHHHHHH
Q 015927 115 AGRALLQVCIVVNNL 129 (398)
Q Consensus 115 ~~~~i~~~~~~~~~~ 129 (398)
..+....+..+++.+
T Consensus 121 ~~r~l~~l~f~l~~~ 135 (585)
T KOG2349|consen 121 RVRYLATLSFILMIF 135 (585)
T ss_pred cchhhHHHHHHHHHH
Confidence 866666555555443
No 129
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=28.72 E-value=88 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhHHHHHH
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMALPATVK 67 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~lP~~~~ 67 (398)
+...+..+..+-+...+|.-+--+|+.+.
T Consensus 85 ~~~p~~aAl~sgls~~~g~liPllp~~~~ 113 (169)
T TIGR00267 85 RRRVYMSGFIDGFSTFMGSFVPVLPFLVF 113 (169)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677778888888887777898763
No 130
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=27.02 E-value=3.8e+02 Score=22.53 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHHhhhhhhHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHcChhHHHHHHHHHHHH
Q 015927 53 TIVGAGIMALPATVKE--LGLIPGLIMIVLVGWLTESSIDMIMRFSRASKSATYSGVVADAFGGAGRALLQVCIVVN 127 (398)
Q Consensus 53 ~~iG~GiL~lP~~~~~--~G~~~g~~~l~~~~~l~~~t~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~ 127 (398)
+-+|.+++..|.+... -++..-.+.++..++++...+.+.. -+-++.-|+|.+.+..+.....
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~------------~~l~k~~g~W~Gi~YG~~~W~i 111 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYY------------ALLKKFKGPWPGILYGLAWWAI 111 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhcccchHHHHHHHHHHH
Confidence 4468889999988752 2444334444455555555544432 2335667788887777666543
No 131
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=6.7e+02 Score=24.90 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHhh
Q 015927 275 IVRTSITLCSTVYITTSFFGLL 296 (398)
Q Consensus 275 ~~~~~~~~~~~~Y~~~g~~gy~ 296 (398)
-......++..+.+..|..||.
T Consensus 556 yFGYm~~f~~~lgim~Gtigy~ 577 (593)
T KOG1277|consen 556 YFGYMAVFCYALGLMCGTIGYV 577 (593)
T ss_pred hhHHHHHHHHHHHHHHhhHhhh
Confidence 3344445556666666666664
No 132
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=25.51 E-value=2.6e+02 Score=20.15 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=30.0
Q ss_pred cCCHHHHHHhhhhhhhhHHHHHhhhHHHhhhcC--CCCchhhHHHHHHHHHH
Q 015927 327 VPSIWDAFQFTGATAAVSVGFIFPAAIALRDTH--GIATKNDRLASWLMISL 376 (398)
Q Consensus 327 ~p~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~--~~~~~~~~~~~~~~~~~ 376 (398)
-.+...+...-+++++.-+ .++|.++|..+++ ...++.+|.....+..+
T Consensus 11 ~~~~l~vl~~y~~l~~~YL-lVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~ 61 (81)
T PF10716_consen 11 PSDTLLVLLAYAALAGLYL-LVVPLILYFWMNKRWYVMSSFERLFMYFLVFL 61 (81)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666444 7889888877544 34566677665554443
No 133
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=24.91 E-value=7e+02 Score=24.83 Aligned_cols=41 Identities=5% Similarity=-0.049 Sum_probs=28.0
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 015927 106 GVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAW 147 (398)
Q Consensus 106 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (398)
+..+..+| .+.++..+...+..+++..+.+...+..+....
T Consensus 308 ~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~a 348 (501)
T TIGR00911 308 DFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGG 348 (501)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677 566777777777778877777777776665443
No 134
>COG3162 Predicted membrane protein [Function unknown]
Probab=24.84 E-value=2e+02 Score=21.68 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=12.8
Q ss_pred Cchhh-hhhcchhHHHHHHHHHHHH
Q 015927 301 RTLDD-VLANFDVTAALMGFIFVGA 324 (398)
Q Consensus 301 ~~~~~-il~~~~~~~~~~~~~~~~a 324 (398)
...++ ++..+|+.+..++.++++.
T Consensus 54 p~~~~~Vt~Gip~gvg~fv~tfVlt 78 (102)
T COG3162 54 PLFGASVTRGIPFGVGVFVMTFVLT 78 (102)
T ss_pred cccCCceehhHhHHHHHHHHHHHHH
Confidence 33344 6666666655555555443
No 135
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.47 E-value=73 Score=31.63 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=39.2
Q ss_pred CHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 103 TYSGVVADAFGGAGRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 103 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
.+.+..+...+++...++++......+++..+.....+..+..+..
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~ 320 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMAR 320 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhh
Confidence 5778888888899999999999999999999999888888866554
No 136
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=23.79 E-value=2.8e+02 Score=21.92 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhCHHH
Q 015927 43 FSGAVFNLSTTIVGAGIMALPATVKELGLIP 73 (398)
Q Consensus 43 ~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~ 73 (398)
.++-......+.+=.|-+++|..++++|.+-
T Consensus 65 ~~idlA~FlTg~~vvs~falPiVl~ha~lI~ 95 (131)
T KOG2174|consen 65 ACIDLAKFLTGAIVVSAFALPIVLAHAGLIG 95 (131)
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHhhHhh
Confidence 3344444555555578899999999999773
No 137
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.20 E-value=1e+03 Score=26.23 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 015927 116 GRALLQVCIVVNNLGMLVVYMIIIGDVLSGAWL 148 (398)
Q Consensus 116 ~~~i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (398)
+..++.+..++..+++..+.+...+..+..+..
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmAr 418 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCK 418 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888888888888777777655443
No 138
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=23.07 E-value=7.9e+02 Score=24.80 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhH----HHHHHH---hC--------HHHHHHHHHHHHHHHHHHHHHHHHH-----H-h
Q 015927 39 DGASFSGAVFNLSTTIVGAGIMAL----PATVKE---LG--------LIPGLIMIVLVGWLTESSIDMIMRF-----S-R 97 (398)
Q Consensus 39 ~~~s~~~~~~~l~~~~iG~GiL~l----P~~~~~---~G--------~~~g~~~l~~~~~l~~~t~~~l~~~-----~-~ 97 (398)
.+-|.++-+.-+.++-+|+|++.- |....+ .| .-.+.....+=+.+..++.+.+.-. . +
T Consensus 84 Pefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~ 163 (504)
T PRK03356 84 PEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFV 163 (504)
T ss_pred CCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHh
Confidence 345555566677778888888754 332221 12 1112222233233333333333222 1 2
Q ss_pred hcCC-CCHHHHHHHHcChh-----HHHHHHHHHHHHHHHHHHH
Q 015927 98 ASKS-ATYSGVVADAFGGA-----GRALLQVCIVVNNLGMLVV 134 (398)
Q Consensus 98 ~~~~-~~y~~l~~~~~G~~-----~~~i~~~~~~~~~~g~~~~ 134 (398)
|.+. .+.++..+-.+|++ .+.++|+..++...+....
T Consensus 164 ~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~Gvat 206 (504)
T PRK03356 164 RKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGT 206 (504)
T ss_pred cCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHH
Confidence 3333 37789998899842 2456666655554444333
No 139
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.04 E-value=1.7e+02 Score=28.80 Aligned_cols=21 Identities=14% Similarity=-0.095 Sum_probs=11.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHH
Q 015927 35 EAGIDGASFSGAVFNLSTTIV 55 (398)
Q Consensus 35 ~~~~~~~s~~~~~~~l~~~~i 55 (398)
.+.++.....+..-.+++-..
T Consensus 38 ~~~~~~~~~~s~~~tl~hl~k 58 (449)
T KOG1304|consen 38 LQLRDREHPTSATQTLIHLLK 58 (449)
T ss_pred cccccCCCCCchHHHHHHHHH
Confidence 444445565666666666433
No 140
>PRK11901 hypothetical protein; Reviewed
Probab=22.96 E-value=1.2e+02 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=14.4
Q ss_pred ccchhHhhhccCCCCCCCCccc
Q 015927 3 IQSSVERKYRKSPRAPLLPQAQ 24 (398)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (398)
.+.|+|-+.+.+|++|..+.+.
T Consensus 4 fkpe~elkPDtSDRrp~Rsr~~ 25 (327)
T PRK11901 4 FKPEDELKPDTSDRRPTRSRKS 25 (327)
T ss_pred CCcccccCCCcccCCCcccccC
Confidence 4556666777777777766543
No 141
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=22.66 E-value=6.5e+02 Score=24.75 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHhhhcCCCchhhhhhc--chhHHHHHHHHHHHHhccCC--HHHHHHhhhhhhh
Q 015927 281 TLCSTVYITTSFFGLLLFGDRTLDDVLAN--FDVTAALMGFIFVGANFVPS--IWDAFQFTGATAA 342 (398)
Q Consensus 281 ~~~~~~Y~~~g~~gy~~fg~~~~~~il~~--~~~~~~~~~~~~~~a~~~p~--~~~i~~~~G~~~~ 342 (398)
...+++|++..+.....-..+....-.+| ++..+++++...+.+.++|+ +..+-..+|-+++
T Consensus 81 fal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga 146 (429)
T PF03348_consen 81 FALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGA 146 (429)
T ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHH
Confidence 44455555555554333222222233333 33788888999999999998 3444444555444
No 142
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=21.98 E-value=4.5e+02 Score=26.90 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=46.6
Q ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHhhccccccccccCccCCCcchhhhccccccchhHHHHHHHHHHhhcccccccc
Q 015927 114 GAGRA---LLQVCIVVNNLGMLVVYMIIIGDVLSGAWLNGVHHSGVTEEWFGQHWWTTRFTLLLLTTLFVFLPLISFRRV 190 (398)
Q Consensus 114 ~~~~~---i~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 190 (398)
++.|. ++++...+.....+.+.+...+..+..+.. ++....++..-.-..+.+...++..+......+..+.
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~-----~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~ 389 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAK-----DGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSL 389 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHh-----cCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence 44455 888888888887777777777776665544 3444555543211233444444444344444444455
Q ss_pred ------chhhhhhHHHH
Q 015927 191 ------DSLRYTSALSV 201 (398)
Q Consensus 191 ------~~l~~~s~~~~ 201 (398)
+.|..++.++.
T Consensus 390 ~~~~~f~~L~~~~si~t 406 (554)
T KOG1286|consen 390 GAATVFNWLVNLSSIGT 406 (554)
T ss_pred ccchHHHHHHHHHhHHH
Confidence 55555666555
No 143
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=20.39 E-value=1.9e+02 Score=23.78 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=33.3
Q ss_pred HhhhhhhhhHHHHHhhhHHHhhhc-CCCCchhhHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 015927 335 QFTGATAAVSVGFIFPAAIALRDT-HGIATKNDRLASWLMISLAVSSSTVAVSSDIYSI 392 (398)
Q Consensus 335 ~~~G~~~~~~~~~i~P~l~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~ 392 (398)
+..|+.++...+|..|.+.+.... ..+.-...+--...-+++|+..++.++..+-...
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~ 91 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQ 91 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 445566666888999998876411 1111111113334557778887777776554443
No 144
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=20.27 E-value=4e+02 Score=24.09 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.6
Q ss_pred ccCCCCCCCCc
Q 015927 12 RKSPRAPLLPQ 22 (398)
Q Consensus 12 ~~~~~~~~~~~ 22 (398)
.++|++|+..+
T Consensus 144 ~~~~~~~~~~~ 154 (254)
T PF07857_consen 144 KSSEETPLSIE 154 (254)
T ss_pred ccccccccccc
Confidence 33344444443
Done!