Query 015928
Match_columns 398
No_of_seqs 143 out of 222
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5157 CDC73 RNA polymerase I 100.0 1.4E-75 3E-80 555.2 26.3 342 2-396 3-360 (362)
2 KOG3786 RNA polymerase II asse 100.0 1.2E-74 2.6E-79 568.9 22.2 352 1-398 2-392 (395)
3 PF05179 CDC73: RNA pol II acc 100.0 2.1E-66 4.6E-71 504.4 13.2 161 231-395 113-273 (273)
4 KOG3786 RNA polymerase II asse 97.6 1.4E-05 3E-10 80.7 0.8 46 51-96 1-46 (395)
5 smart00481 POLIIIAc DNA polyme 33.2 28 0.0006 26.2 1.6 30 61-90 12-41 (67)
6 PF14504 CAP_assoc_N: CAP-asso 28.8 39 0.00085 30.1 2.1 30 312-341 45-75 (141)
7 PRK07313 phosphopantothenoylcy 19.4 73 0.0016 29.5 2.0 35 233-267 112-151 (182)
8 PF14869 DUF4488: Domain of un 17.9 51 0.0011 29.4 0.6 76 236-315 40-122 (133)
9 PRK06029 3-octaprenyl-4-hydrox 17.6 1E+02 0.0022 28.8 2.5 35 233-267 114-150 (185)
10 TIGR02113 coaC_strep phosphopa 16.9 1.1E+02 0.0025 28.1 2.7 35 233-267 111-150 (177)
No 1
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=100.00 E-value=1.4e-75 Score=555.19 Aligned_cols=342 Identities=26% Similarity=0.405 Sum_probs=268.5
Q ss_pred ChhHHHHHHHhcCCC-----------CcceecCcEEEecC----CccccCCCcceeeecCCceeeHHHHHHHHHhCCCCh
Q 015928 2 DPLSALRDFTIRSEL-----------DKVTQTGDEILFGS----DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKH 66 (398)
Q Consensus 2 DpL~~LR~~~~~~~~-----------~~i~~~~~~i~fg~----~~~~pk~~~T~f~~~~~~~ytL~si~f~~~~~d~~~ 66 (398)
..|.+||.++.+++. .+++.....+.|.+ .++|+.+..|.... +..+.|++|||||+|+|.++
T Consensus 3 n~ldllk~~l~~~d~~~l~~~E~~s~~~kv~~~q~~~f~~~~S~~~~fe~ne~~eiE~--DS~~qLR~v~f~wlnrD~s~ 80 (362)
T COG5157 3 NSLDLLKKALRDPDACQLSPEEIVSGGKKVPPKQMVKFKGTESKEYTFEQNEETEIEI--DSLVQLRIVLFYWLNRDKSY 80 (362)
T ss_pred cHHHHHHHHhcCccceecchhhccccCcccCceeEEEecCCCCceeecCcccceeecc--cchhhhhhhhhhhhhccchH
Confidence 568899999998852 11223347788843 25788888888874 58999999999999999999
Q ss_pred HHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCCchhhHHHHHhccccCCcc
Q 015928 67 TDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPLKDR 146 (398)
Q Consensus 67 ~~Yv~~a~~~~i~~Vs~~dRkdLl~yL~G~~dts~~I~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~I~~~Er~l~dr 146 (398)
++||++|++.||++|+|+||+|||+||+|.+|++.+|+...|......+ ++..+..+.....+.+-+.+.+||.+.+|
T Consensus 81 a~Y~~~C~e~gi~ni~fl~rtdlI~wlegnteSsq~l~~~~~k~EtSs~--ts~s~~~D~~~sd~~V~~~~k~eR~l~~h 158 (362)
T COG5157 81 AVYMTLCRESGIGNIYFLDRTDLIEWLEGNTESSQYLKAPGQKKETSST--TSISARIDSEVSDPVVVETMKHERILVGH 158 (362)
T ss_pred HHHHHHHHHcCcccEEEeeHHHHHHHHhCCcchhhhhcCCCCCCCCccc--ccceeecccccccHHHhhhhhcceeecCC
Confidence 9999999999999999999999999999999999999753222211111 11112222333347899999999999999
Q ss_pred hhhhh-ccCcchHHHHHhhhHHHHHHHHHHhhhhcccccccccccCcccCCcccCCCCCCCCCCCCCCcccCCCChhhhh
Q 015928 147 EALLE-CKGIDFYSVLVSSTRREEERQRIESQQRKDGLVAKNRLMGVDERGIGYGGGGGGGGGGAGDEAYEANPKPKLLQ 225 (398)
Q Consensus 147 nsvLr-~k~~dF~~vl~~~~~~e~~~~~~~~~~~k~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 225 (398)
||+|+ .||++|.+++.++.. ++ ++++.+. .|+.+.+ ..|.
T Consensus 159 ns~l~G~kpi~f~~l~kd~ed-----~l---~qs~~~s------------------~~Hk~ah--------~Rp~----- 199 (362)
T COG5157 159 NSRLIGLKPISFLGLLKDKED-----KL---VQSEGGS------------------LGHKGAH--------GRPT----- 199 (362)
T ss_pred CceeecccccchhhhhhhHHH-----Hh---hhhcccc------------------ccccccc--------cCcc-----
Confidence 99999 599999999966532 22 2221110 0111111 1111
Q ss_pred cccCCCCCCCcEEEecCCcccccchhhHHHHhhcCCccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCC
Q 015928 226 LKSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPST 305 (398)
Q Consensus 226 ~~~~k~~~~~PIIivPsa~tslitm~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~ 305 (398)
|...++||||||++++|++||+|||+|||+|+||+|.+......+ --.+.+.+...+ ...+++|++||++.+
T Consensus 200 ----k~~~kDPIIlvp~saSS~lt~~NIK~FleEgkyV~P~n~~~~~~G--~~i~~~eK~~~~--~~g~~rfIiVd~t~~ 271 (362)
T COG5157 200 ----KYYAKDPIILVPQSASSPLTLSNIKEFLEEGKYVNPRNLPSCSDG--IRISEVEKVELD--LDGPFRFIIVDDTGG 271 (362)
T ss_pred ----ccccCCceEEeccccccceeHHHHHHHHHhcCccCccccccCCCC--ceEEeeeehhhc--ccCceEEEEEcCCCC
Confidence 222579999999999999999999999999999997664321111 113444444432 356899999999999
Q ss_pred CCCCCCCeEEEEEeeCCccccCCCCCCCHHHHhccccEEEEEeCCCCCCchhcccccceEEEEeCCCCccccHHHHHHHH
Q 015928 306 MKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVW 385 (398)
Q Consensus 306 ~~~~dW~RVVAVFv~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~D~~~~~~FW 385 (398)
|+||||||||||||||++|||++|+|++|.+||++|+||||+|.||++|+ .+++|||+.+.++++|||.|+++|..||
T Consensus 272 FkpeyWdRVVciFttG~~WQf~~y~w~~p~elF~~~kgfyf~~~Gd~~~~--~~~~wNve~i~v~~~kR~~drevvs~~w 349 (362)
T COG5157 272 FKPEYWDRVVCIFTTGSKWQFGRYNWRDPGELFNTIKGFYFARRGDQSNL--YMRNWNVEEIGVHDGKRFVDREVVSSIW 349 (362)
T ss_pred cChhhhceEEEEEecCCeeeecCcccCCHHHHHhhCCceEEEEcCCCCCh--hhhccCceeEEeecCcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 015928 386 DRLEEFVRSRS 396 (398)
Q Consensus 386 ~~le~~~~~r~ 396 (398)
+.||++|..|+
T Consensus 350 ~~le~~~~~r~ 360 (362)
T COG5157 350 ERLEGCILGRG 360 (362)
T ss_pred HHHHHHHhhcc
Confidence 99999999886
No 2
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=100.00 E-value=1.2e-74 Score=568.94 Aligned_cols=352 Identities=36% Similarity=0.559 Sum_probs=274.1
Q ss_pred CChhHHHHHHHhcCCCCcceec--------------CcEEEecC---CccccCCCcceeeecCCceeeHHHHHHHHHhCC
Q 015928 1 MDPLSALRDFTIRSELDKVTQT--------------GDEILFGS---DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYN 63 (398)
Q Consensus 1 ~DpL~~LR~~~~~~~~~~i~~~--------------~~~i~fg~---~~~~pk~~~T~f~~~~~~~ytL~si~f~~~~~d 63 (398)
||.|.+|+.++..+ ..+.+. ..++.|-. ...+|++..|...+ +.-.+|+.+++||..++
T Consensus 2 l~sll~l~kn~~~~--h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~~~~~~~~e~~~~~~--d~~~~~~i~~l~~amsd 77 (395)
T KOG3786|consen 2 LDSLLLLLKNVALK--HDVYLRASAEESIPVVTRPDRKELLFYLNGPIAKKPRTEETELEN--DSVFDLRIKSLSEAMSD 77 (395)
T ss_pred hhHHHHHHHHHhhc--CCeeeecccccCCCccccccHHHHHhhcCChhhccCCccceeeee--cccccHHHHHHHHHhcc
Confidence 68999999999999 554442 24455521 22466666666553 44899999999999999
Q ss_pred CChHHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCCchhhHHHHHhccccC
Q 015928 64 LKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPL 143 (398)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~dRkdLl~yL~G~~dts~~I~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~I~~~Er~l 143 (398)
.++++|.++|.+.+..+++|.+|.|++.||+|-.++. .+.++.|+.+||++
T Consensus 78 ~~ia~ykak~~~~~~~~~k~~~~~d~i~~~~g~~~~d-----------------------------~d~~~~i~k~Er~~ 128 (395)
T KOG3786|consen 78 ESIAEYKAKCLAKKRTNIKFLVRTDLIVWLKGNTESD-----------------------------VDLIRDILKRERPW 128 (395)
T ss_pred HHHHHHhHHHHHhcccchhcccchHHHHHhhCCcccc-----------------------------HHHHhhhhccCCcc
Confidence 9999999999999999999999999999999932211 15778899999999
Q ss_pred CcchhhhhccCcchH----HHHHhhhHHHHHHHHHHhhhh----------ccc--ccccccccCcccCCcccCCCCCCCC
Q 015928 144 KDREALLECKGIDFY----SVLVSSTRREEERQRIESQQR----------KDG--LVAKNRLMGVDERGIGYGGGGGGGG 207 (398)
Q Consensus 144 ~drnsvLr~k~~dF~----~vl~~~~~~e~~~~~~~~~~~----------k~~--~~~~~r~~~~~~~~~~~~~~~~~~~ 207 (398)
++|.++|++.+++|. +++...+.+++.++..+.++. ..+ +..|+||.+... .++.++++|.
T Consensus 129 rt~~~il~~~~~~~~k~~~s~l~~~~~~~e~~~~v~~~~~~~~~v~~~~~~~~p~~~~y~ryi~~rf--~~~~~~~~Gs- 205 (395)
T KOG3786|consen 129 RTRTTILQSTGREFVKNIFSKLQEVKAREEDRKTVEEHNPNFMPVDPAIRIDGPKPIDYNRYIQERF--LSFGIDTYGS- 205 (395)
T ss_pred chHHHHHhhcchhhhhhHHHHhhccceeeecCcccccccccccCCCHHHhcCCccchhhhhhhhhhh--hccccccccc-
Confidence 999999999888882 344444444444444333221 112 235788874322 2334455443
Q ss_pred CCCCCCcccCCCChhhhhc------ccCCCCCCCcEEEecCCcccccchhhHHHHhhcCCccCChhhhhccCCCCCceEE
Q 015928 208 GGAGDEAYEANPKPKLLQL------KSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVT 281 (398)
Q Consensus 208 ~~~~~~~~~~~p~~~~~~~------~~~k~~~~~PIIivPsa~tslitm~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~ 281 (398)
+| ..+ +|..+.+.. .+...++++||||||+|+||||||+|||+|||||+|+|...++.+++. ++++|.
T Consensus 206 ~g-~~l----~~~~e~~~~~~~~~~~~~~~prr~PIIlvPsA~sSlITm~NiK~fLeEgkyvp~~~k~~~g~~-~~~~v~ 279 (395)
T KOG3786|consen 206 HG-MKL----KPVHEGARKRRKKQPGASGGPRRDPIILVPSAASSLITMLNIKEFLEEGKYVPEAAKKNQGCR-RPEEVL 279 (395)
T ss_pred cc-ccC----CccchhhhhccccCCCCCCCCccCcEEEechhhcchhhHHhHHHHHHhcccCccchhhcCCCC-CCceee
Confidence 22 111 111111100 001223589999999999999999999999999999995555555443 899999
Q ss_pred EEeeecCCCCCeeeEEEEEcCCCCCCCCCCCeEEEEEeeCCccccCCCCCCCHHHHhccccEEEEEeCCCCCCchhcccc
Q 015928 282 VQKKFSRDRDQVVKAYEVRDKPSTMKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQ 361 (398)
Q Consensus 282 i~r~~~~~~~~~~~~f~vvD~~~~~~~~dW~RVVAVFv~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~ 361 (398)
|+|++++. .++++|+|||||.+|+|+||||||||||+|++||||+|||+||++||++||||||+|.|+++++ +|++
T Consensus 280 ve~kf~~~--~~~v~y~VVDn~~~ltPedWDRVVaVF~~G~~WQFk~wpw~dp~eIF~ki~gF~l~f~gd~~~~--~v~~ 355 (395)
T KOG3786|consen 280 VEKKFDNF--KVTVRYRVVDNPTKLTPEDWDRVVAVFVTGPKWQFKGWPWRDPVEIFNKIKGFHLHFRGDPLDP--NVQQ 355 (395)
T ss_pred eeeccccc--ccceEEEEecCCCcCChhhhceEEEEEeecCccccCCCCCCCHHHHHhhcceeEEEecCCCCCc--chhh
Confidence 99999753 3689999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred cceEEEEeCCCCccccHHHHHHHHHHHHHHHHhccCC
Q 015928 362 WNVKIISISKNKRHQDRAAALEVWDRLEEFVRSRSHS 398 (398)
Q Consensus 362 WnV~~l~i~r~kRh~D~~~~~~FW~~le~~~~~r~~~ 398 (398)
|||+.|.|+++|||.|++++.+||+.||+||+.|++.
T Consensus 356 wnV~~lels~~kRh~Dr~v~~~fWe~Ler~m~~r~~~ 392 (395)
T KOG3786|consen 356 WNVEALELSKNKRHVDREVLSEFWERLERYMASRKPL 392 (395)
T ss_pred hceeEEEeecccccccHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999998763
No 3
>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme. The Paf1 complex, which also contains Cdc73, Ctr9, Hpr1, Ccr4, Rtf1 and Leo1, is required for full expression of a subset of yeast genes, particularly those responsive to signals from the Pkc1/MAP kinase cascade. The complex appears to play an essential role in RNA elongation []. ; PDB: 3V46_A.
Probab=100.00 E-value=2.1e-66 Score=504.38 Aligned_cols=161 Identities=49% Similarity=0.933 Sum_probs=117.4
Q ss_pred CCCCCcEEEecCCcccccchhhHHHHhhcCCccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCCCCCCC
Q 015928 231 IGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSED 310 (398)
Q Consensus 231 ~~~~~PIIivPsa~tslitm~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~~~~~d 310 (398)
..+++||||||+|+||||||+|||+|||||+||+++++...++ .++++|+|+|++.++. ..+++|+|||||.+|+|||
T Consensus 113 ~~~~~PIIiVp~s~sSlitm~NiK~FLed~~fv~~~~~~~~~~-~~~~~v~i~r~~~~~~-~~~v~f~VvD~~~~~~ped 190 (273)
T PF05179_consen 113 RRSKDPIIIVPPSASSLITMYNIKQFLEDGKFVPPDEKRKSGS-SKPNEVTIQRKFDRIK-PGPVRFRVVDNPEKFTPED 190 (273)
T ss_dssp ---S--EEE----TT-SS-TTTHHHHHHH--------GGGS----TTSEEEEEE--TTSS-S--EEEEEESSSTT--GGG
T ss_pred cCCCCCEEEECCcccchhHHHHHHHHHHcCeeecCccccccCC-CCCCEEEEEeccCCCC-CCceeEEEecChhhCCccc
Confidence 3367999999999999999999999999999999888876654 4789999999996532 2389999999999999999
Q ss_pred CCeEEEEEeeCCccccCCCCCCCHHHHhccccEEEEEeCCCCCCchhcccccceEEEEeCCCCccccHHHHHHHHHHHHH
Q 015928 311 WDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLEE 390 (398)
Q Consensus 311 W~RVVAVFv~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~D~~~~~~FW~~le~ 390 (398)
|+|||||||+|++||||+|||++|++||++||||||+|+|+++|+ +|++|||++|.|+|+|||+|++++++||+.||+
T Consensus 191 W~RVVAVF~~G~~WQFk~w~~~~P~~LF~~v~gf~~~~~~~~~p~--~v~~WnV~~l~l~r~kRh~D~~~~~~FW~~Le~ 268 (273)
T PF05179_consen 191 WDRVVAVFVTGQAWQFKGWPWSDPVELFQKVKGFYVHYDGDKVPP--NVKQWNVKVLRLSRNKRHLDREVVEEFWEKLEK 268 (273)
T ss_dssp GGGEEEEE--S-GGGGTTSSS-SHHHHHHHSEEEEEEETTS---H--HHHHSSEEEEEE-SS--TTHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeECchhhhCCCCCCCHHHHhhcCcEEEEEecCCCCCh--hHhcCCCeEEEeCCCcccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhc
Q 015928 391 FVRSR 395 (398)
Q Consensus 391 ~~~~r 395 (398)
||++|
T Consensus 269 ~m~~~ 273 (273)
T PF05179_consen 269 FMRKR 273 (273)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 99976
No 4
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=97.65 E-value=1.4e-05 Score=80.66 Aligned_cols=46 Identities=39% Similarity=0.688 Sum_probs=44.8
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHhCCCCceecCchhhHHHhhcCC
Q 015928 51 TLQTVVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGV 96 (398)
Q Consensus 51 tL~si~f~~~~~d~~~~~Yv~~a~~~~i~~Vs~~dRkdLl~yL~G~ 96 (398)
||+||+|+.+|..++|..||++|.++.++.|+.+||++||.||+|.
T Consensus 1 tl~sll~l~kn~~~~h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~ 46 (395)
T KOG3786|consen 1 TLDSLLLLLKNVALKHDVYLRASAEESIPVVTRPDRKELLFYLNGP 46 (395)
T ss_pred ChhHHHHHHHHHhhcCCeeeecccccCCCccccccHHHHHhhcCCh
Confidence 6999999999999999999999999999999999999999999993
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.16 E-value=28 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.3
Q ss_pred hCCCChHHHHHHHHhCCCCceecCchhhHH
Q 015928 61 HYNLKHTDYIQRARSNKLPAVTLPDRKPLY 90 (398)
Q Consensus 61 ~~d~~~~~Yv~~a~~~~i~~Vs~~dRkdLl 90 (398)
+...+..+|++.|++.|+..|.+.|...+-
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~ 41 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNLF 41 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCccc
Confidence 445678899999999999999999998543
No 6
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=28.80 E-value=39 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=25.0
Q ss_pred CeEEEEEeeCCccccCCCCCCCHH-HHhccc
Q 015928 312 DRVVAVFVLGKEWQFKEWPFKDHV-EIFNKI 341 (398)
Q Consensus 312 ~RVVAVFv~G~~WQFk~w~~~~p~-~lF~~v 341 (398)
++||+++++|..|...+++.+.+. ++|++.
T Consensus 45 ~kV~~lyt~~~~~~~~p~kiG~s~~~v~~~~ 75 (141)
T PF14504_consen 45 GKVVALYTNGNDINVSPFKIGMSKSEVFKKL 75 (141)
T ss_pred CEEEEEEECCcccccCCeecCCCHHHHHHhc
Confidence 999999999999999999887554 566653
No 7
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=19.38 E-value=73 Score=29.50 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCCcEEEecCC----cccccchhhHHHHhhcCCccC-Chh
Q 015928 233 EGVPIILVPSA----SQTLITIYNVKEFLEDGVYIP-TDV 267 (398)
Q Consensus 233 ~~~PIIivPsa----~tslitm~NiK~FLe~g~fv~-~~~ 267 (398)
.+.|+||+|+. ..+.++.-|+...=+.|..|= |..
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~ 151 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE 151 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 46899999984 346789999999999887654 443
No 8
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=17.89 E-value=51 Score=29.40 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=46.2
Q ss_pred cEEEecCCcccccchhhHHHHhhcCCccCChhhhh--ccCCCCCceEEEEeeecCCCCCeeeEEEEEcC-----CCCCCC
Q 015928 236 PIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVK--NMNGMRPECVTVQKKFSRDRDQVVKAYEVRDK-----PSTMKS 308 (398)
Q Consensus 236 PIIivPsa~tslitm~NiK~FLe~g~fv~~~~~~~--~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~-----~~~~~~ 308 (398)
=|.++|.+. ++||.+===++..|+.|+..=++.- .+-..+.+++.+++.-+ +--.++|.+=+. +...-.
T Consensus 40 Ni~~~~~~~-aiIt~~GtY~~~sD~~Y~E~IeKnv~lp~~~g~~n~l~fe~~~d---nll~iky~~~~~~~~~~~~~w~~ 115 (133)
T PF14869_consen 40 NITMIPKSG-AIITGYGTYEQPSDNIYVESIEKNVHLPFLDGKDNELEFELLHD---NLLKIKYFLPGDLNGNEINQWFH 115 (133)
T ss_pred EEEEeCCCC-cEEEEeEEEEEcCCccceeeecceecCcccCCCccEEEEEecCC---CEEEEEEEcCCCccccccCCcEE
Confidence 344456555 7788877777778888876322210 01123567888887553 234567777655 345567
Q ss_pred CCCCeEE
Q 015928 309 EDWDRVV 315 (398)
Q Consensus 309 ~dW~RVV 315 (398)
|+|.||+
T Consensus 116 E~W~RV~ 122 (133)
T PF14869_consen 116 EYWKRVP 122 (133)
T ss_pred EEEEecc
Confidence 8999986
No 9
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=17.61 E-value=1e+02 Score=28.82 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=27.8
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCC-ccCChh
Q 015928 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGV-YIPTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~-tslitm~NiK~FLe~g~-fv~~~~ 267 (398)
.+.|+||+|..+ .+.++.-|+...-+.|. +++|..
T Consensus 114 ~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~ 150 (185)
T PRK06029 114 ERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVP 150 (185)
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCc
Confidence 468999999765 36799999999999887 555655
No 10
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=16.87 E-value=1.1e+02 Score=28.10 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCCccC-Chh
Q 015928 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYIP-TDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~t----slitm~NiK~FLe~g~fv~-~~~ 267 (398)
.+.|++|+|+..+ ..++.-|++.+=+.|.++= |..
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 4689999998764 5688999999999887654 544
Done!