Query 015928
Match_columns 398
No_of_seqs 143 out of 222
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 04:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 27.7 11 0.00078 31.7 1.7 35 233-267 112-151 (183)
2 d1mvla_ c.34.1.1 (A:) 4'-phosp 21.7 19 0.0014 30.1 2.1 35 234-268 114-153 (182)
3 d1nd9a_ a.6.1.6 (A:) N-termina 19.0 47 0.0034 21.9 3.3 32 63-94 13-49 (49)
4 d1g5qa_ c.34.1.1 (A:) Epidermi 18.5 23 0.0017 29.3 1.9 34 234-267 107-145 (174)
5 d1a62a1 a.140.3.1 (A:1-47) Rho 18.5 38 0.0027 22.1 2.6 30 62-91 7-36 (47)
6 d1qzua_ c.34.1.1 (A:) 4'-phosp 15.7 32 0.0023 28.5 2.2 34 234-267 117-155 (181)
7 d1k91a_ b.104.1.1 (A:) Calreti 14.5 41 0.003 21.0 1.9 14 299-312 5-18 (37)
8 d1luga_ b.74.1.1 (A:) Carbonic 9.3 1.1E+02 0.0078 26.0 3.7 39 333-371 178-218 (259)
9 d1m65a_ c.6.3.1 (A:) Hypotheti 9.2 57 0.0042 25.8 1.7 27 64-90 17-43 (244)
10 d1jdla_ a.3.1.1 (A:) Cytochrom 8.3 45 0.0033 25.2 0.6 14 82-95 102-115 (118)
No 1
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=27.72 E-value=11 Score=31.68 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCC-ccCChh
Q 015928 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~t----slitm~NiK~FLe~g~-fv~~~~ 267 (398)
.+.||||+|+..+ ..++.-|++.+-++|. +++|.+
T Consensus 112 ~~~pvviaPaMn~~M~~np~~~~ni~~L~~~G~~vi~P~~ 151 (183)
T d1p3y1_ 112 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 151 (183)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred ccCceEEEEccchHHHhhhhhHHHHHHHHHCCCEEeCCCC
Confidence 3579999998865 5688999999999995 566654
No 2
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.75 E-value=19 Score=30.08 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCcEEEecCCcc----cccchhhHHHHhhcCC-ccCChhh
Q 015928 234 GVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDVK 268 (398)
Q Consensus 234 ~~PIIivPsa~t----slitm~NiK~FLe~g~-fv~~~~~ 268 (398)
+.||||+|+.-+ ..+|.-|++.+-++|. +++|+..
T Consensus 114 ~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G 153 (182)
T d1mvla_ 114 TKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKK 153 (182)
T ss_dssp TSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC-
T ss_pred CCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcc
Confidence 479999999875 4678999999999987 5667654
No 3
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=18.98 E-value=47 Score=21.86 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHhCCCC-----ceecCchhhHHHhhc
Q 015928 63 NLKHTDYIQRARSNKLP-----AVTLPDRKPLYEYLT 94 (398)
Q Consensus 63 d~~~~~Yv~~a~~~~i~-----~Vs~~dRkdLl~yL~ 94 (398)
..+.-.-+.+..++||+ .|+=.|++.||+||+
T Consensus 13 ~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK~~LL~~Ln 49 (49)
T d1nd9a_ 13 QTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLN 49 (49)
T ss_dssp SSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHHC
T ss_pred CcCHHHHHHHHHHcCCCCCCCCccCHHHHHHHHHhhC
Confidence 45566678888888874 688899999999996
No 4
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}
Probab=18.51 E-value=23 Score=29.26 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEecCCcc----cccchhhHHHHhhcCC-ccCChh
Q 015928 234 GVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDV 267 (398)
Q Consensus 234 ~~PIIivPsa~t----slitm~NiK~FLe~g~-fv~~~~ 267 (398)
+.||||+|+..+ ..++.-|++.+-++|. +++|+.
T Consensus 107 ~~piiiaPaMn~~Mw~~p~~~~nl~~L~~~G~~vi~P~~ 145 (174)
T d1g5qa_ 107 YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (174)
T ss_dssp GGGEEEEECSCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cccEEEEecccHHHHhhhhHHHHHHHHHHCCCEEECCCC
Confidence 479999999865 5789999999999987 555654
No 5
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.48 E-value=38 Score=22.12 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHhCCCCceecCchhhHHH
Q 015928 62 YNLKHTDYIQRARSNKLPAVTLPDRKPLYE 91 (398)
Q Consensus 62 ~d~~~~~Yv~~a~~~~i~~Vs~~dRkdLl~ 91 (398)
+..+.++-+.-|.+.||.+++..-+.||+-
T Consensus 7 k~k~~~EL~~iA~~lgIen~~~lrKQeLif 36 (47)
T d1a62a1 7 KNTPVSELITLGENMGLENLARMRKQDIIF 36 (47)
T ss_dssp HTSCHHHHHHHHHTTTCCCCTTSCHHHHHH
T ss_pred hcCCHHHHHHHHHHcCCCCcccccHHHHHH
Confidence 457789999999999999999999999974
No 6
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.75 E-value=32 Score=28.53 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCcEEEecCCcc----cccchhhHHHHhhcCCcc-CChh
Q 015928 234 GVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (398)
Q Consensus 234 ~~PIIivPsa~t----slitm~NiK~FLe~g~fv-~~~~ 267 (398)
+.||+|+|+..+ ..+|--|++.+-+.|..+ +|..
T Consensus 117 ~kPv~iaPaMn~~Mw~np~tq~nl~~Lk~~G~~vi~P~~ 155 (181)
T d1qzua_ 117 SKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 155 (181)
T ss_dssp TSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCEEEEECccHHHHhhHHHHHHHHHHHHCCcEEeCCCC
Confidence 479999999976 478999999998888754 4554
No 7
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.50 E-value=41 Score=20.99 Aligned_cols=14 Identities=43% Similarity=0.798 Sum_probs=11.8
Q ss_pred EEcCCCCCCCCCCC
Q 015928 299 VRDKPSTMKSEDWD 312 (398)
Q Consensus 299 vvD~~~~~~~~dW~ 312 (398)
.|.+++..+|+|||
T Consensus 5 ~IpDp~A~kP~dWd 18 (37)
T d1k91a_ 5 HIPDPDAKKPEDWD 18 (37)
T ss_dssp EEECSSCCSCTTCC
T ss_pred ccCCCCCCCCCccc
Confidence 36788889999998
No 8
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]}
Probab=9.28 E-value=1.1e+02 Score=25.98 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.8
Q ss_pred CHHHHhccccEEEEEeCCCCCCchhcccccce--EEEEeCC
Q 015928 333 DHVEIFNKIIGFYMRFEDDSVESAKIVKQWNV--KIISISK 371 (398)
Q Consensus 333 ~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV--~~l~i~r 371 (398)
++..|+-.-.+||-+--.-+.|||.+.=.|-| +.+.|++
T Consensus 178 ~l~~llp~~~~yy~Y~GSLTtPPC~E~V~W~V~~~p~~Is~ 218 (259)
T d1luga_ 178 DPRGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSS 218 (259)
T ss_dssp CGGGGCCSCCCEEEEEECCSSTTCCSCEEEEEESSCEEECH
T ss_pred chhhhCCCCCceEEEeCCCCCCCCCCCeEEEEeCceeecCH
Confidence 57778877889877777788899999999987 5566654
No 9
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}
Probab=9.25 E-value=57 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.8
Q ss_pred CChHHHHHHHHhCCCCceecCchhhHH
Q 015928 64 LKHTDYIQRARSNKLPAVTLPDRKPLY 90 (398)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~dRkdLl 90 (398)
.+..++++.|++.|+..|.++|--.+.
T Consensus 17 ~~~~e~v~~A~~~Gl~~iaiTDH~~~~ 43 (244)
T d1m65a_ 17 STLSDYIAQAKQKGIKLFAITDHGPDM 43 (244)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEECTTS
T ss_pred CCHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 356789999999999999999986543
No 10
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=8.30 E-value=45 Score=25.23 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=11.2
Q ss_pred ecCchhhHHHhhcC
Q 015928 82 TLPDRKPLYEYLTG 95 (398)
Q Consensus 82 s~~dRkdLl~yL~G 95 (398)
+-.||.|||+||.-
T Consensus 102 ~~~d~~dliaYL~s 115 (118)
T d1jdla_ 102 DEQERKDVVAYLKQ 115 (118)
T ss_dssp CHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHH
Confidence 34689999999974
Done!