Query 015929
Match_columns 398
No_of_seqs 222 out of 1687
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 2.6E-50 5.6E-55 390.2 33.3 289 74-390 12-313 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 1.5E-40 3.3E-45 329.1 31.1 278 74-372 9-319 (328)
3 TIGR00841 bass bile acid trans 100.0 6.4E-40 1.4E-44 319.3 27.6 260 105-390 9-284 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 5.1E-36 1.1E-40 295.1 30.8 289 76-383 2-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 1.2E-31 2.6E-36 259.3 31.3 310 63-393 2-341 (342)
6 PF01758 SBF: Sodium Bile acid 99.9 4.3E-25 9.4E-30 202.3 16.8 164 108-272 2-184 (187)
7 KOG2718 Na+-bile acid cotransp 99.9 9.1E-25 2E-29 216.4 11.1 267 76-369 87-368 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.3 3.2E-11 6.9E-16 119.4 15.3 124 87-217 197-320 (321)
9 PRK09903 putative transporter 99.3 5.3E-11 1.2E-15 117.6 14.5 123 87-217 188-310 (314)
10 COG0679 Predicted permeases [G 99.2 6.5E-10 1.4E-14 109.9 15.3 150 64-219 156-309 (311)
11 PF03547 Mem_trans: Membrane t 98.9 1.5E-08 3.3E-13 102.3 14.1 139 74-214 243-385 (385)
12 KOG4821 Predicted Na+-dependen 98.8 5.4E-09 1.2E-13 95.7 5.1 142 67-212 14-162 (287)
13 PRK12460 2-keto-3-deoxyglucona 98.1 0.00026 5.6E-09 69.5 19.3 276 68-387 5-309 (312)
14 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.056 1.2E-06 53.2 21.9 154 68-230 5-172 (314)
15 PF05145 AmoA: Putative ammoni 97.4 0.18 4E-06 50.1 30.4 110 106-220 27-137 (318)
16 KOG2718 Na+-bile acid cotransp 97.3 0.00025 5.5E-09 71.3 4.5 238 110-378 50-311 (371)
17 TIGR00793 kdgT 2-keto-3-deoxyg 97.2 0.013 2.9E-07 57.2 14.7 154 68-230 5-172 (314)
18 PRK03562 glutathione-regulated 97.0 0.73 1.6E-05 50.1 31.0 110 77-194 32-145 (621)
19 COG0475 KefB Kef-type K+ trans 96.9 0.65 1.4E-05 47.6 29.9 114 106-224 62-182 (397)
20 PLN03159 cation/H(+) antiporte 96.8 1.4 3E-05 49.6 31.3 68 314-382 365-437 (832)
21 PRK03659 glutathione-regulated 96.7 1.2 2.6E-05 48.2 32.0 84 106-194 60-145 (601)
22 TIGR03082 Gneg_AbrB_dup membra 96.6 0.16 3.5E-06 45.2 15.8 107 105-216 48-155 (156)
23 PRK05274 2-keto-3-deoxyglucona 96.3 0.38 8.1E-06 48.1 18.3 80 77-161 17-100 (326)
24 PRK10669 putative cation:proto 95.7 3.7 8E-05 43.9 32.1 81 77-162 33-113 (558)
25 PRK04288 antiholin-like protei 95.5 0.42 9.2E-06 45.3 13.9 89 127-217 86-174 (232)
26 PRK10711 hypothetical protein; 95.5 0.13 2.9E-06 48.7 10.3 89 127-217 81-169 (231)
27 TIGR00659 conserved hypothetic 95.4 0.13 2.8E-06 48.6 10.0 92 124-217 77-168 (226)
28 PF03547 Mem_trans: Membrane t 95.3 0.055 1.2E-06 54.6 7.9 73 300-373 63-136 (385)
29 PF04172 LrgB: LrgB-like famil 95.3 0.16 3.5E-06 47.7 10.1 89 127-217 70-158 (215)
30 PRK12460 2-keto-3-deoxyglucona 94.6 0.35 7.5E-06 47.8 10.9 109 107-219 195-305 (312)
31 COG3180 AbrB Putative ammonia 94.6 5.9 0.00013 39.9 30.7 108 107-219 61-169 (352)
32 PF05145 AmoA: Putative ammoni 94.4 1.3 2.8E-05 44.1 14.6 110 105-219 205-315 (318)
33 COG1346 LrgB Putative effector 94.1 2.4 5.1E-05 40.1 14.6 96 121-218 77-172 (230)
34 PRK05326 potassium/proton anti 93.4 13 0.00028 39.9 30.3 55 76-130 32-87 (562)
35 PF03601 Cons_hypoth698: Conse 92.9 1.1 2.3E-05 44.5 10.9 138 75-218 27-170 (305)
36 COG3180 AbrB Putative ammonia 91.8 8.5 0.00018 38.8 15.7 110 104-218 237-347 (352)
37 COG2855 Predicted membrane pro 91.6 1.2 2.6E-05 44.5 9.4 136 77-218 40-179 (334)
38 KOG2722 Predicted membrane pro 90.0 0.28 6.1E-06 49.3 3.4 148 68-217 240-403 (408)
39 TIGR00698 conserved hypothetic 89.8 2.9 6.4E-05 41.9 10.6 137 77-218 34-176 (335)
40 PRK05274 2-keto-3-deoxyglucona 87.7 1.9 4.2E-05 43.1 7.6 107 107-218 202-312 (326)
41 PF05684 DUF819: Protein of un 86.7 40 0.00086 34.5 27.9 106 107-217 58-168 (378)
42 COG4651 RosB Kef-type K+ trans 86.5 37 0.0008 33.8 23.0 131 81-218 37-176 (408)
43 TIGR00932 2a37 transporter, mo 83.4 43 0.00093 32.0 20.4 142 68-218 9-160 (273)
44 PRK10711 hypothetical protein; 83.0 12 0.00027 35.5 10.1 80 301-382 90-170 (231)
45 PF04172 LrgB: LrgB-like famil 82.3 9.6 0.00021 35.9 9.1 77 302-382 80-159 (215)
46 COG1346 LrgB Putative effector 82.0 12 0.00025 35.5 9.4 82 301-384 92-174 (230)
47 TIGR00659 conserved hypothetic 81.8 14 0.0003 35.0 10.0 77 302-382 90-169 (226)
48 PF03812 KdgT: 2-keto-3-deoxyg 80.9 7.3 0.00016 38.6 8.0 106 106-219 199-311 (314)
49 PRK04288 antiholin-like protei 80.5 17 0.00037 34.6 10.1 78 301-382 95-175 (232)
50 TIGR00844 c_cpa1 na(+)/h(+) an 80.4 1.1E+02 0.0023 34.6 22.4 55 75-129 39-98 (810)
51 PRK03562 glutathione-regulated 79.2 41 0.0009 36.6 14.1 103 107-217 271-379 (621)
52 TIGR00793 kdgT 2-keto-3-deoxyg 78.4 15 0.00032 36.4 9.2 108 106-219 199-311 (314)
53 PRK03659 glutathione-regulated 76.8 59 0.0013 35.3 14.3 103 107-217 268-376 (601)
54 PF00999 Na_H_Exchanger: Sodiu 75.5 0.69 1.5E-05 46.5 -0.8 107 105-217 51-167 (380)
55 TIGR00840 b_cpa1 sodium/hydrog 75.0 1.3E+02 0.0027 32.5 23.3 102 77-181 38-151 (559)
56 PF03616 Glt_symporter: Sodium 74.6 25 0.00054 35.8 10.1 82 305-386 99-187 (368)
57 TIGR00946 2a69 he Auxin Efflux 74.5 91 0.002 30.6 25.0 45 314-358 252-296 (321)
58 PRK12600 putative monovalent c 72.9 50 0.0011 26.9 10.7 68 321-389 22-90 (94)
59 TIGR03802 Asp_Ala_antiprt aspa 72.7 72 0.0016 34.4 13.6 73 107-181 61-134 (562)
60 PF03956 DUF340: Membrane prot 72.5 24 0.00051 32.6 8.6 129 80-217 4-138 (191)
61 PF05982 DUF897: Domain of unk 72.4 80 0.0017 31.6 12.7 131 62-199 163-302 (327)
62 PRK04972 putative transporter; 71.5 1.1E+02 0.0024 33.0 14.6 76 106-183 62-138 (558)
63 PRK12657 putative monovalent c 71.5 57 0.0012 26.9 10.9 71 321-392 26-97 (100)
64 PLN03159 cation/H(+) antiporte 64.2 1.1E+02 0.0023 34.8 13.2 106 107-217 325-436 (832)
65 TIGR00210 gltS sodium--glutama 63.6 55 0.0012 33.7 10.0 83 304-387 98-188 (398)
66 PRK10669 putative cation:proto 62.2 1.8E+02 0.0038 31.1 14.0 104 107-217 279-387 (558)
67 TIGR03802 Asp_Ala_antiprt aspa 60.6 1.9E+02 0.004 31.3 13.8 103 108-215 452-560 (562)
68 COG3763 Uncharacterized protei 57.2 35 0.00076 26.3 5.4 40 304-343 8-56 (71)
69 COG3329 Predicted permease [Ge 55.9 55 0.0012 32.5 7.9 60 68-129 209-271 (372)
70 PRK00523 hypothetical protein; 55.8 38 0.00083 26.2 5.4 43 301-343 6-57 (72)
71 PRK09824 PTS system beta-gluco 54.7 3.3E+02 0.0071 29.9 14.5 33 145-177 154-187 (627)
72 COG0786 GltS Na+/glutamate sym 54.7 71 0.0015 32.8 8.7 91 304-394 100-196 (404)
73 PF15201 Rod_cone_degen: Progr 54.4 13 0.00029 26.2 2.5 25 373-397 7-31 (54)
74 PRK01844 hypothetical protein; 52.2 47 0.001 25.8 5.4 40 304-343 8-56 (72)
75 TIGR00832 acr3 arsenical-resis 51.6 1.3E+02 0.0028 30.0 10.2 67 140-206 251-317 (328)
76 TIGR00698 conserved hypothetic 51.2 81 0.0018 31.7 8.6 50 105-158 281-330 (335)
77 PRK03818 putative transporter; 49.9 3.6E+02 0.0078 29.0 15.1 74 107-182 64-138 (552)
78 PRK03818 putative transporter; 49.7 1.2E+02 0.0026 32.6 10.2 47 302-349 93-140 (552)
79 KOG2722 Predicted membrane pro 49.0 17 0.00038 36.8 3.4 74 306-379 82-164 (408)
80 PF06826 Asp-Al_Ex: Predicted 49.0 2E+02 0.0044 25.9 14.5 84 106-191 56-141 (169)
81 TIGR00831 a_cpa1 Na+/H+ antipo 48.6 3.6E+02 0.0079 28.7 15.7 51 77-130 25-76 (525)
82 COG0679 Predicted permeases [G 44.7 3.2E+02 0.0069 26.9 27.0 224 105-358 40-283 (311)
83 PRK04972 putative transporter; 43.9 4.5E+02 0.0096 28.4 13.4 104 107-215 446-555 (558)
84 PRK12405 electron transport co 43.9 1.3E+02 0.0028 28.7 8.2 26 234-259 87-112 (231)
85 PF03601 Cons_hypoth698: Conse 43.1 1.5E+02 0.0033 29.3 9.0 48 305-352 88-136 (305)
86 PF03253 UT: Urea transporter; 43.0 1.2E+02 0.0027 29.9 8.4 71 309-383 39-111 (301)
87 PRK09903 putative transporter 41.9 3.4E+02 0.0075 26.5 28.2 57 320-376 248-305 (314)
88 COG0385 Predicted Na+-dependen 41.7 3.8E+02 0.0081 26.9 12.1 131 82-218 175-305 (319)
89 PRK09796 PTS system cellobiose 41.2 4.6E+02 0.0099 27.7 13.6 33 145-177 158-191 (472)
90 PF07214 DUF1418: Protein of u 37.7 2E+02 0.0042 23.7 7.2 42 330-376 31-72 (96)
91 TIGR01625 YidE_YbjL_dupl AspT/ 35.4 3.2E+02 0.0069 24.2 11.5 79 107-189 57-139 (154)
92 TIGR00844 c_cpa1 na(+)/h(+) an 32.0 2.4E+02 0.0053 31.8 9.2 84 108-191 299-384 (810)
93 PF10746 Phage_holin_6: Phage 31.8 34 0.00074 26.0 1.8 17 357-373 35-51 (66)
94 PF01758 SBF: Sodium Bile acid 30.9 2.8E+02 0.006 24.9 8.2 85 138-223 60-149 (187)
95 PRK11677 hypothetical protein; 27.9 86 0.0019 27.3 3.9 20 308-327 8-27 (134)
96 COG5505 Predicted integral mem 27.7 6.4E+02 0.014 25.4 12.1 105 107-216 63-171 (384)
97 PF04246 RseC_MucC: Positive r 27.3 2.6E+02 0.0057 23.7 7.0 23 302-324 70-92 (135)
98 PF06808 DctM: DctM-like trans 27.1 7E+02 0.015 25.6 14.6 65 59-130 203-268 (416)
99 PRK05326 potassium/proton anti 26.3 5E+02 0.011 27.8 10.3 106 107-217 277-390 (562)
100 COG2855 Predicted membrane pro 26.1 3.7E+02 0.008 27.1 8.5 47 106-156 284-330 (334)
101 PRK15086 ethanolamine utilizat 25.7 7.3E+02 0.016 25.4 19.0 28 357-384 331-358 (372)
102 COG0475 KefB Kef-type K+ trans 25.4 7.4E+02 0.016 25.3 14.2 78 108-190 277-354 (397)
103 PF03977 OAD_beta: Na+-transpo 25.0 1.5E+02 0.0033 29.9 5.5 86 312-398 103-191 (360)
104 PF02652 Lactate_perm: L-lacta 24.8 4.4E+02 0.0094 28.3 9.4 28 361-388 234-261 (522)
105 PRK12599 putative monovalent c 24.7 3.7E+02 0.0081 21.6 10.3 60 325-385 29-88 (91)
106 PF15102 TMEM154: TMEM154 prot 24.7 54 0.0012 28.9 2.1 31 358-389 60-90 (146)
107 PF03672 UPF0154: Uncharacteri 23.3 1.5E+02 0.0031 22.6 3.9 32 310-341 7-47 (64)
108 PF05884 ZYG-11_interact: Inte 22.9 6.6E+02 0.014 24.9 9.4 62 300-364 139-201 (299)
109 PF05684 DUF819: Protein of un 22.6 8.3E+02 0.018 24.9 15.9 113 83-204 247-359 (378)
110 PRK06161 putative monovalent c 22.4 4.1E+02 0.0089 21.3 10.2 64 321-385 22-86 (89)
111 PF07760 DUF1616: Protein of u 21.4 5.3E+02 0.012 25.0 8.7 28 311-338 33-65 (287)
112 PF06295 DUF1043: Protein of u 21.1 1.2E+02 0.0026 25.9 3.6 22 309-330 5-26 (128)
113 PF06826 Asp-Al_Ex: Predicted 20.5 6.3E+02 0.014 22.7 13.6 51 301-353 85-136 (169)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=2.6e-50 Score=390.17 Aligned_cols=289 Identities=36% Similarity=0.600 Sum_probs=266.6
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 015929 74 ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV 153 (398)
Q Consensus 74 ~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~ 153 (398)
.+.+++|+.+.+.++...|+.+.+++. .+..+++++||.+|++++.+|+++.. +|||.+++++++||++||++++
T Consensus 12 ~~~~~~~~v~~a~~~~~~~~~~~~~~~----~~~~~l~lImf~mGl~Ls~~d~~~~~-~~p~~vligl~~qfvlmPlla~ 86 (319)
T COG0385 12 FKIFLLWVVLLAAIAPIFPETFGWLGS----AIPIALALIMFGMGLTLSREDFLAGL-KHPRLVLIGLAAQFVLMPLLAL 86 (319)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhhH----HHHHHHHHHHHhcCCCCCHHHHHHhh-cchHHHHHHHHHHHHHHHHHHH
Confidence 556899999999999999999998874 46789999999999999999999998 8999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccChHHHHHHH
Q 015929 154 IVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST 233 (398)
Q Consensus 154 ~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd~~~~~l~l 233 (398)
++++++++|++++.|+++++|||+|+.||+||+++|||+++++.++.+||+++++++|+++.++.|+++++|.++++.++
T Consensus 87 ~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i 166 (319)
T COG0385 87 LLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSI 166 (319)
T ss_pred HHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred -------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHH
Q 015929 234 -------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG 300 (398)
Q Consensus 234 -------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 300 (398)
+|++.|++.++.++.++.++..+++++++..++.+.+++.++ . .
T Consensus 167 ~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~----------------------~-~ 223 (319)
T COG0385 167 LLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS----------------------G-L 223 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH----------------------H-H
Confidence 289999999999999999999999999999999888765431 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFF 380 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~ 380 (398)
.+.+.+++++.++|..||+.+|++|+|++|++|++||+|+||.++|+++|..||++|.+++|.++|++||++.+++++++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~ 303 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGL 303 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 46677788889999999999999999999999999999999999999999997755999999999999999999999999
Q ss_pred HhccCCCCCC
Q 015929 381 WRYIDPSDSK 390 (398)
Q Consensus 381 ~~~~~~~~~~ 390 (398)
|+||+.++.|
T Consensus 304 ~~~~~~~~~~ 313 (319)
T COG0385 304 YARRILKAAE 313 (319)
T ss_pred HHhccccccc
Confidence 9998755543
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=1.5e-40 Score=329.12 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=228.9
Q ss_pred hhHHHHHHHHHHHHHhhcccccchhhhcc----chhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH
Q 015929 74 ASLYPLYVTVGGVIACLKPSAFGWFVQRG----PASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP 149 (398)
Q Consensus 74 ~~~~p~~i~~~~llgl~~P~~~~~~~~~~----~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P 149 (398)
..+..+.+.++.++|+..|+.+.+.+... .......+.++||++|++++.+|+++.+ ||||.+..+++.|++++|
T Consensus 9 ~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~-~~pk~~~~~~~~qfvi~P 87 (328)
T TIGR00832 9 TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVF-KDPKGLILSLFINWIIGP 87 (328)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence 33444555556689999999888775421 1113456778999999999999999998 899999999999999999
Q ss_pred HHHHHHHHHc-CCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC--------c
Q 015929 150 TSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG--------T 220 (398)
Q Consensus 150 ll~~~l~~l~-~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g--------~ 220 (398)
+++|++++++ +++++++.|+++++|||||++|++||+++|||+++++.+|.+||+++++++|.++.++.| +
T Consensus 88 lla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~ 167 (328)
T TIGR00832 88 FLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLT 167 (328)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 9999999975 999999999999999999999999999999999999999999999999999999998876 3
Q ss_pred ccccChHHHHHHH-------------HHHHHHH-----HHH-HhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 015929 221 YVPVDAVKLSIST-------------LQSAFPA-----AVK-VVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAAL 281 (398)
Q Consensus 221 ~v~vd~~~~~l~l-------------lr~~~p~-----~~~-~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~ 281 (398)
++++|.++++.++ +|++.++ +.+ +..+..+.++.+++++++...++.|.+.+.+.
T Consensus 168 ~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~------ 241 (328)
T TIGR00832 168 VITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIEL------ 241 (328)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 4688988877654 2788774 333 67777888888888888888888887765431
Q ss_pred cchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cch
Q 015929 282 TSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVA 360 (398)
Q Consensus 282 ~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~a 360 (398)
.+....+..++++++.++|.+||+++|.+|++++|+||+++|+|+||.++|+++|.++|+++ ..+
T Consensus 242 --------------~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a 307 (328)
T TIGR00832 242 --------------PLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAA 307 (328)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccH
Confidence 11233455677789999999999999999999999999999999999999999999999864 455
Q ss_pred HHHHHHHHHHHH
Q 015929 361 LPPAMSAVIMNI 372 (398)
Q Consensus 361 lp~~i~~l~q~i 372 (398)
.+.++..++|..
T Consensus 308 ~~~~~~~l~e~~ 319 (328)
T TIGR00832 308 LATVVGPLIEVP 319 (328)
T ss_pred HHHHhhhhhehh
Confidence 555555555544
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=6.4e-40 Score=319.32 Aligned_cols=260 Identities=37% Similarity=0.604 Sum_probs=232.1
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHH
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~ 184 (398)
.+.+.++++||.+|++++.+|+++.+ +|||.+..+++.|++++|+++|+++++++++++++.|+++++||||+.++++|
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~-~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHL-RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHH
Confidence 45567999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccc----cChHHHHHHH------------HHHHHHHHHHHhccc
Q 015929 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VDAVKLSIST------------LQSAFPAAVKVVTPF 248 (398)
Q Consensus 185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~----vd~~~~~l~l------------lr~~~p~~~~~i~~~ 248 (398)
|+++|||.++++.++.++|+++++++|+++.++.+.+.+ +|+++++.++ +|++.|+..++.++
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~~~~v~vPl~lG~~~r~~~p~~~~~~~~- 166 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLSLVAVLIPVSIGMLVKHKLPQIAKIILK- 166 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Confidence 999999999999999999999999999999999876555 8887776542 28888998888888
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 015929 249 TPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKE 328 (398)
Q Consensus 249 ~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~ 328 (398)
.+.++.+.+.+++..+++.|.+.+.+ +.+.++++++++++++|.+||+.+|.+|+++
T Consensus 167 ~~~~s~~~l~liv~~~~~~~~~~i~~-----------------------~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~ 223 (286)
T TIGR00841 167 VGLISVFLLSVIIAVVGGINVENLAT-----------------------IGPLLLLVGILLPLAGFLLGYLLAKLAGLPW 223 (286)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 88899888888877777777665432 1234667788899999999999999999999
Q ss_pred chhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 015929 329 PQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSK 390 (398)
Q Consensus 329 ~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~~ 390 (398)
+|+|++++|+|+||+++|+++|.++|+ |+.++|.++|.++|++.+..++.+|+|+....+|
T Consensus 224 ~~~~t~~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~ 284 (286)
T TIGR00841 224 ARCRTISIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIHFCYLK 284 (286)
T ss_pred hhheeeeeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999996 8899999999999999999999999887655443
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=5.1e-36 Score=295.06 Aligned_cols=289 Identities=27% Similarity=0.374 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhccc-hhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929 76 LYPLYVTVGGVIACLKPSAFGWFVQRGP-ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (398)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~~~~~-~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (398)
++++.+.+++++|+.+|+.+...+...+ +....++++++|..|++++.+|+++.+ +|+|.++.++..+|+++|+++++
T Consensus 2 ~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~-~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 2 WFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAAL-RNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred chHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999998875544321 245778999999999999999999998 89999999999999999999999
Q ss_pred HHHHc--CCChhHHHHHHHHccCchhhHHH-HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh-CcccccChHHHH
Q 015929 155 VSKFL--GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA-GTYVPVDAVKLS 230 (398)
Q Consensus 155 l~~l~--~l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~-g~~v~vd~~~~~ 230 (398)
+.+++ .++++++.|+++++|+||+..|+ +||+++|||+++++.++.++|+++++++|+++.++. ++..++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 99988 46899999999999999998777 799999999999999999999999999999999999 677888887765
Q ss_pred HHH-------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHh-hhhhhhhhhcchhhhHHHHhhhhh
Q 015929 231 IST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRL-KSSVVGAALTSDLSLISRIKSILS 296 (398)
Q Consensus 231 l~l-------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i-~~~i~~~~~~~~~~~~~~~~~~l~ 296 (398)
.++ +|++.+++.+|.++..+.++..+++++++..++.+..+- .++ .-.
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~------------------~~~ 222 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHS------------------VSA 222 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh------------------CCH
Confidence 443 399999999999999999999999999999988764321 110 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCC----ccchHHHHHHHHHHHH
Q 015929 297 GELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS----SMVALPPAMSAVIMNI 372 (398)
Q Consensus 297 ~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~----p~~alp~~i~~l~q~i 372 (398)
.....+....+.+|...+.++|+.+|.+|++++|++|+.||+++||.++|++++...|++ +.+.+|.++||..|.+
T Consensus 223 ~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~ 302 (313)
T PF13593_consen 223 AALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF 302 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence 123345666778899999999999999999999999999999999999999999999975 3789999999999999
Q ss_pred HHHHHHHHHhc
Q 015929 373 MGSTLGFFWRY 383 (398)
Q Consensus 373 ~~s~la~~~~~ 383 (398)
++++++..|+|
T Consensus 303 ~~s~la~~~~r 313 (313)
T PF13593_consen 303 VGSFLASRLAR 313 (313)
T ss_pred HHHHHHHHHcC
Confidence 99999999986
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-31 Score=259.30 Aligned_cols=310 Identities=19% Similarity=0.205 Sum_probs=259.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH----HHHhhcccccchhhhc----cchhHHHHHHHHHHHHcccCChHHHHHHHhcCc
Q 015929 63 KPRWEYLLSTAASLYPLYVTVGG----VIACLKPSAFGWFVQR----GPASYSLSLGLIMLAMGLTLELKDLISLFMQRP 134 (398)
Q Consensus 63 ~~~~~~~l~~l~~~~p~~i~~~~----llgl~~P~~~~~~~~~----~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p 134 (398)
+.++.|.+++++++++.|+.+++ .+|..+|+.....+.. .+..+.+++.+||+.+.++++++++++.+ +++
T Consensus 2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~-k~~ 80 (342)
T COG0798 2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVF-KDP 80 (342)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHH-hcc
Confidence 34567788888888888877666 5666778854444321 23357899999999999999999999998 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHH
Q 015929 135 LSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL 213 (398)
Q Consensus 135 ~~l~~~l~~~~vl~Pll~~~l~~l~-~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~ 213 (398)
|.+.+.++.|+++-|+++|+++++| ++.|++.+|+++++.+||.+++.+|+++++||.++++..++++.++++++.|.+
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcc-cccChHHHHHHHH-------------HHHHH-----H-HHHHhcccchhHHHHHHHHHHHHHHhhhhHHhh
Q 015929 214 TKILAGTY-VPVDAVKLSISTL-------------QSAFP-----A-AVKVVTPFTPLFAVLMSSLLACSVFSENLVRLK 273 (398)
Q Consensus 214 l~ll~g~~-v~vd~~~~~l~ll-------------r~~~p-----~-~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~ 273 (398)
.+++.+.. .+++++++..+++ |+... + ..++..|..++++..++++.+..+|+.+.+.|.
T Consensus 161 ~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv 240 (342)
T COG0798 161 GKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIV 240 (342)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHH
Confidence 99998765 7788888776642 33222 2 336678888889999999999999999998886
Q ss_pred hhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHh
Q 015929 274 SSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAH 353 (398)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~ 353 (398)
++. .+...+++..++.....|.++|+++|..|++++|+++++|+++.+|..+|+++|.+.
T Consensus 241 ~~p--------------------~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~l 300 (342)
T COG0798 241 EQP--------------------LDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIAL 300 (342)
T ss_pred hCh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHh
Confidence 531 234566777788888999999999999999999999999999999999999999999
Q ss_pred cC-CccchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 015929 354 FT-SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSP 393 (398)
Q Consensus 354 f~-~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~~~~~ 393 (398)
|+ +...++..+++.++|.+.--.+++.+++.+++..++.+
T Consensus 301 fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~ 341 (342)
T COG0798 301 FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER 341 (342)
T ss_pred cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
Confidence 98 56788888999999999988888888766655544433
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.93 E-value=4.3e-25 Score=202.33 Aligned_cols=164 Identities=37% Similarity=0.610 Sum_probs=137.9
Q ss_pred HHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHccCchhhHHHHHHH
Q 015929 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVVTL 186 (398)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~ 186 (398)
+.++++||.+|++++.+|+++.. ||||.+..+++.|++++|+++|+++ ..++++++++.|+++++||||+.++++||+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~-~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVL-RRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHH-HSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 47899999999999999999998 8999999999999999999999999 788999999999999999999999999999
Q ss_pred HhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccC---hHHHHHHH-------------HHHHHH--HHHHHhccc
Q 015929 187 IARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD---AVKLSIST-------------LQSAFP--AAVKVVTPF 248 (398)
Q Consensus 187 ~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd---~~~~~l~l-------------lr~~~p--~~~~~i~~~ 248 (398)
++|||.++++.++.++++++++++|+++.++.+...+.| .+.+..++ +|++.| +..+++++.
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~ 160 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF 160 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998877777 66655443 389999 788899999
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHh
Q 015929 249 TPLFAVLMSSLLACSVFSENLVRL 272 (398)
Q Consensus 249 ~~~is~~~llliv~~v~a~n~~~i 272 (398)
.+.++..++++++...++.|.+.+
T Consensus 161 ~~~~s~~~l~~~i~~~~~~~~~~i 184 (187)
T PF01758_consen 161 LKPLSFILLLLIIVLIFASNASVI 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH---
T ss_pred hhHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999888888888876644
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.1e-25 Score=216.40 Aligned_cols=267 Identities=37% Similarity=0.518 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHHhhcc-cccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929 76 LYPLYVTVGGVIACLKP-SAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (398)
Q Consensus 76 ~~p~~i~~~~llgl~~P-~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (398)
..|.......+.....| ..+.|+.+. .....+...|+++|++++.+++++.+ +||..+.+|++.|++++|+.+|.
T Consensus 87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~---~~~~gl~~~~ls~g~~~~~~~~~~~~-~rP~~~~lG~v~q~~i~pl~~f~ 162 (371)
T KOG2718|consen 87 ILPLLVFLLKVLFLLDPLLAFTWLVTG---CFPPGLLSNMLSFGIKLDMDLFAGMI-KRPTPLALGFVPQYLIMPLLGFL 162 (371)
T ss_pred chhHHHHHHHHHhhcCCcccceEEEeC---ccccHHHHHHHHHhcCccHHHHhhHh-hCCcceeehHHHHHHHHHHHHHh
Confidence 57888888888888888 778888754 45678999999999999999999998 89999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHccCchhhHHHHHHHHh-CCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccChHHHHHH-
Q 015929 155 VSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA-RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIS- 232 (398)
Q Consensus 155 l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a-~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd~~~~~l~- 232 (398)
+.+.+.++...++|.+++.|++++..++..++.. +||+.+++.+|.++|+.+++++|++-.++.+..++.|...+..+
T Consensus 163 ~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~ 242 (371)
T KOG2718|consen 163 LSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASI 242 (371)
T ss_pred hhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhh
Confidence 9999999888878888888777777666555554 99999999999999999999999999999988888776544321
Q ss_pred ------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHH
Q 015929 233 ------------TLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG 300 (398)
Q Consensus 233 ------------llr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 300 (398)
++|+++|+..+.+.+.++.++.....+.+..-...|..... ...+
T Consensus 243 ~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~-----------------------~~~~ 299 (371)
T KOG2718|consen 243 LQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFL-----------------------FFGY 299 (371)
T ss_pred hHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHH-----------------------HHHH
Confidence 13888998888899999999888777766554544443221 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHH
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVI 369 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~ 369 (398)
.++..+..+++.+|..||+.++..+-+..++|++++|+|+||+.+++++++.+|+||.++.+++...+.
T Consensus 300 ~i~~~~~~l~l~g~l~~Y~~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v~ 368 (371)
T KOG2718|consen 300 QILLLGAALPLAGFLAGYLLSFSPLDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSVL 368 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhhh
Confidence 688888999999999999997433333558999999999999999999999999999888887765543
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.32 E-value=3.2e-11 Score=119.44 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=107.3
Q ss_pred HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 015929 87 IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS 166 (398)
Q Consensus 87 lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~ 166 (398)
+|+..|+......+. ......++.|+.+|+.++.++.+ ++.+......+++++++|++++++...++++++..
T Consensus 197 ~~i~lP~~l~~~l~~---lg~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~ 269 (321)
T TIGR00946 197 VGFKMPGLILKSISI---LSGATTPMALFSLGLALSPRKIK----LGVRDAILALIVRFLVQPAVMAGISKLIGLRGLEL 269 (321)
T ss_pred HhhcCcHHHHHHHHH---HHHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 455557655544432 45789999999999999877654 23466778888999999999999999999999999
Q ss_pred HHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 167 ~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
...++++++|++..+.++++.+|+|.+++...+.++|+++++++|+|+.++
T Consensus 270 ~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 270 SVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999875
No 9
>PRK09903 putative transporter YfdV; Provisional
Probab=99.28 E-value=5.3e-11 Score=117.62 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 015929 87 IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS 166 (398)
Q Consensus 87 lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~ 166 (398)
.|+..|+......+. ......++.|+.+|+++...+++. + +......+.++++.|++++++...+++++...
T Consensus 188 ~~i~lP~~i~~~l~~---lg~~~~PlaL~~iG~~L~~~~~~~----~-~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~ 259 (314)
T PRK09903 188 VGVKIPAAWDPTFNL---IAKANSGVAVFAAGLTLAAHKFEF----S-AEIAYNTFLKLILMPLALLLVGMACHLNSEHL 259 (314)
T ss_pred cCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccccc----c-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 444567655544432 568899999999999998776532 2 34557788899999999998888899999999
Q ss_pred HHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 167 ~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
...++++++|++..+.++++.+|+|.+++...+.+||+++.+++|+|++++
T Consensus 260 ~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 260 QMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876
No 10
>COG0679 Predicted permeases [General function prediction only]
Probab=99.16 E-value=6.5e-10 Score=109.88 Aligned_cols=150 Identities=24% Similarity=0.287 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhhHHHHH-HHHHHH---HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHH
Q 015929 64 PRWEYLLSTAASLYPLY-VTVGGV---IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILF 139 (398)
Q Consensus 64 ~~~~~~l~~l~~~~p~~-i~~~~l---lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~ 139 (398)
....+.++.+.++.+++ .++|.+ +++..|+......+. ......++.|+.+|++++.+..++. +++....
T Consensus 156 ~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~---l~~a~~pl~li~lG~~L~~~~~~~~---~~~~~~~ 229 (311)
T COG0679 156 KSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDL---LASAASPLALIALGLSLAFLKLKGS---KPPIILI 229 (311)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHH---HHHhhhhHHHHHHhhhcchhhhccc---cchhHHH
Confidence 34445666665533333 333333 445667754444332 5678999999999999999555542 3455666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 140 ~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
....+++++|++++++.++++++++....+++++++|++.+++++++++|+|.+++...+.++|+++.+++|.+...+..
T Consensus 230 ~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 230 ALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67779999999999999999999999999999999999999999999999999999999999999999999999888754
No 11
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.92 E-value=1.5e-08 Score=102.32 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHhhccccc----chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH
Q 015929 74 ASLYPLYVTVGGVIACLKPSAF----GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP 149 (398)
Q Consensus 74 ~~~~p~~i~~~~llgl~~P~~~----~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P 149 (398)
.+-..+..++|.++++.-|..- .+..+...+.....+++.||.+|..+.....+... +.+......+.+++++|
T Consensus 243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~--~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL--GWKPSIIAVLVRLIILP 320 (385)
T ss_pred hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch--hhHHHHHHHHHHHHHHH
Confidence 3333444566666665432221 22322222245778999999999998876554332 23444456889999999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHH
Q 015929 150 TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLT 214 (398)
Q Consensus 150 ll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l 214 (398)
++++++.+.++++++....+++.+++|++..+.+++..++.|.+.+...+..+++++++++|+|+
T Consensus 321 ~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 321 LIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 12
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.79 E-value=5.4e-09 Score=95.69 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=112.7
Q ss_pred HHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch--hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929 67 EYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA--SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (398)
Q Consensus 67 ~~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~--~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (398)
+|..++. .+|+-+.+.++...+.+-|+.+...+...+. ...+..+-+++..|++++.|++.... ++++..+.+++.
T Consensus 14 ~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~-~~w~LhLFilI~ 92 (287)
T KOG4821|consen 14 HRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAM-LNWRLHLFILIL 92 (287)
T ss_pred HHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHH-hCCchHHHHHHH
Confidence 6788888 7789999999998899989876555444331 12456777899999999999999998 899988888998
Q ss_pred HHHHHHHHHHHHHHHc---CCChhHHHHHHHHccCchhhHHH-HHHHHhCCChhhHHHHHHHHHHHHHhHHHH
Q 015929 144 QYTIMPTSGVIVSKFL---GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPL 212 (398)
Q Consensus 144 ~~vl~Pll~~~l~~l~---~l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~Gd~~la~~l~~lstlla~~~~Pl 212 (398)
.+.+.|...|++..+. +.|+++..|+.+.+|||++.+|+ +.|..+|||.. ..+..|++++.++.|.
T Consensus 93 ~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~---A~~v~S~f~g~L~~~~ 162 (287)
T KOG4821|consen 93 SLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNAS---ALCVCSVFIGNLLGAF 162 (287)
T ss_pred HHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHH---HHHHHHHHHHHHhhhH
Confidence 9999999999887665 46788999999999999999999 79999999983 3344444444444443
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.15 E-value=0.00026 Score=69.48 Aligned_cols=276 Identities=19% Similarity=0.213 Sum_probs=140.4
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHH
Q 015929 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA 142 (398)
Q Consensus 68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~ 142 (398)
|.++++ -....+=+++++++.-++|+.+. .+..... -..+.+++.+|++|.+++.++..+.+ +|.- .-+.
T Consensus 5 ~~~~kiPgg~m~vPl~lga~inTf~P~~l~-iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l-~kg~---~l~~ 79 (312)
T PRK12460 5 KAIKKIPGGMMVVPLLIGALINTFFPQALE-IGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQAL-LKGG---VLTI 79 (312)
T ss_pred hhhccCCCceeHHHHHHHHHHHhccCcchh-hCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhh-hhhh---hhhh
Confidence 344555 33334446788888889998743 2222110 12568899999999999999998887 4322 3345
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH--H---HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 143 AQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN--V---VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 143 ~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~--v---~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
.++++-=++++.+.++++.+.-. |+-.++..-+-.++| . ++.++|-+.+-.. ....+.-- -|+...+.
T Consensus 80 ~K~~~~~~~g~~~~~~~g~~g~~--Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA-~~~~sl~~----GPf~tm~a 152 (312)
T PRK12460 80 TKLGVAIVIGLLVGKFFGAEGIF--GLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGA-ISILSLND----GPFFTMLA 152 (312)
T ss_pred HHHHHHHHHHHHHHHHcCccccc--chHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhH-Hhhhhhcc----CcHHHHHH
Confidence 68888888899999999866532 332222222222222 3 3555555444333 22222222 34333333
Q ss_pred hCcc--cccCh---HHHHHHH-----HHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hhhhHHhhhhhhhhhhcc
Q 015929 218 AGTY--VPVDA---VKLSIST-----LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVF----SENLVRLKSSVVGAALTS 283 (398)
Q Consensus 218 ~g~~--v~vd~---~~~~l~l-----lr~~~p~~~~~i~~~~~~is~~~llliv~~v~----a~n~~~i~~~i~~~~~~~ 283 (398)
.+.. .++++ .++.+.+ ++...++..+..++-.+.. +.+..+ ..|.+++.+
T Consensus 153 Lga~gLA~ip~~~lv~lilpILiGmilGNld~~~~~~l~~Gi~f~-------I~f~~f~LG~~lnl~~I~~--------- 216 (312)
T PRK12460 153 LGAAGLANIPIMALVAALLPLVLGMILGNLDPDMRKFLTKGGPLL-------IPFFAFALGAGINLSMLLQ--------- 216 (312)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhccchhhHHHHhccceEe-------HHHHHHHhcCCeeHHHHHH---------
Confidence 2221 12332 2222222 2445554555555544431 111111 222222211
Q ss_pred hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHHH--hcCC--cc
Q 015929 284 DLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATA--HFTS--SM 358 (398)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~~--~f~~--p~ 358 (398)
..+ .-++..++...+.+.++|+++|++|.+++...+++-++| |. .-+.+++.. .+.. +.
T Consensus 217 -------------~G~-~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAG--nAIcgpAAVaAadP~~~~~~~~ 280 (312)
T PRK12460 217 -------------AGL-AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAG--NAVATPLAIAAADPSLAPVAAA 280 (312)
T ss_pred -------------hCh-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhh--HHHHHHHHHHHhchhHHHHHHH
Confidence 111 122333344567788999999999887776555553344 43 222222221 1210 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 015929 359 VALPPAMSAVIMNIMGSTLGFFWRYIDPS 387 (398)
Q Consensus 359 ~alp~~i~~l~q~i~~s~la~~~~~~~~~ 387 (398)
+..=++-..++-.+...++..+|.||.++
T Consensus 281 Ataqvaa~vivTail~P~~t~~~~k~~~~ 309 (312)
T PRK12460 281 ATAQVAASVIVTAILTPLLTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112334456667777778888777543
No 14
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.40 E-value=0.056 Score=53.19 Aligned_cols=154 Identities=14% Similarity=0.225 Sum_probs=92.7
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (398)
Q Consensus 68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (398)
|-++++ -..+.+=+++++++.-++|+.++..+..... -....+++.+|++|.+++.++..+.+ ||- ...++.
T Consensus 5 ~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~l-kkg---~~ll~~ 80 (314)
T PF03812_consen 5 KTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVL-KKG---GVLLLV 80 (314)
T ss_pred HhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHH-Hhh---hHHHHH
Confidence 344444 3445666778888899999987644332110 12578899999999999999999988 432 234567
Q ss_pred HHHHHHHHHHHHHHHcCCChh---HHHH---HHHHccCchhhHHH--HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 015929 144 QYTIMPTSGVIVSKFLGLPPA---LSVG---LILLSCCPGGTASN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK 215 (398)
Q Consensus 144 ~~vl~Pll~~~l~~l~~l~~~---~~~g---l~l~~~~P~~~~s~--v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ 215 (398)
++++-=++++++.++|+.+.- ...| +.+++++-....+. .++..+|-+.+-++ .. +++...-|+...
T Consensus 81 K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA-~~----i~sl~~GPf~tM 155 (314)
T PF03812_consen 81 KFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA-FS----ILSLNDGPFFTM 155 (314)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH-HH----HHHhhhhHHHHH
Confidence 888888889999999976542 2222 23333332222222 34555554444433 22 344455566665
Q ss_pred HHhCc--ccccChHHHH
Q 015929 216 ILAGT--YVPVDAVKLS 230 (398)
Q Consensus 216 ll~g~--~v~vd~~~~~ 230 (398)
+..|. ..++|+..+.
T Consensus 156 l~LG~sG~a~ip~~~lv 172 (314)
T PF03812_consen 156 LALGASGLANIPWMSLV 172 (314)
T ss_pred HHHhhccccCCCHHHHH
Confidence 55543 3467765543
No 15
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.38 E-value=0.18 Score=50.15 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-HH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VV 184 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v~ 184 (398)
......++=..+|..++.+.+.+.. +.+..+....+...+..-..+|.+.+.-+.|.. --+.+++|+|.+.. ++
T Consensus 27 r~~~q~ilG~~iG~~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~l 101 (318)
T PF05145_consen 27 RNAGQAILGVSIGSSFTPEVLAQLA-SWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVAL 101 (318)
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHH
Confidence 3556666667789999999999875 555555555555566666667777777777654 34689999999777 79
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCc
Q 015929 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT 220 (398)
Q Consensus 185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~ 220 (398)
++..|+|.+..+....+=-++-++++|+...++.+.
T Consensus 102 a~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 102 AEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred HHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999888763
No 16
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00025 Score=71.31 Aligned_cols=238 Identities=20% Similarity=0.259 Sum_probs=146.7
Q ss_pred HHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHh
Q 015929 110 LGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT-IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA 188 (398)
Q Consensus 110 l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v-l~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a 188 (398)
+...|+..|++++.++++++. ++++.+...+..++- ++|+..+.....+-.++......+...++|++..++.++.-.
T Consensus 50 L~~~~~~~~c~~~i~~~~~h~-~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~ 128 (371)
T KOG2718|consen 50 LNFVMFSLGCNLTISLLWRHS-LRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGI 128 (371)
T ss_pred HhHhhcccccceeccchhhhh-cCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhc
Confidence 336799999999999999887 677677777778888 999999999888888888889999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhHHH-HHHHHHhC----cc--cccChH-HH-HHH---------HHHHHHHHHHHHhcccch
Q 015929 189 RGDVPLSIVMTMCTTLGAVLFTP-LLTKILAG----TY--VPVDAV-KL-SIS---------TLQSAFPAAVKVVTPFTP 250 (398)
Q Consensus 189 ~Gd~~la~~l~~lstlla~~~~P-l~l~ll~g----~~--v~vd~~-~~-~l~---------llr~~~p~~~~~i~~~~~ 250 (398)
++|.+....++.-.+.+.+..+| ++++=+.| .. .+-+.. .. +.. .+....++-...+...+.
T Consensus 129 ~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT 208 (371)
T KOG2718|consen 129 KLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMT 208 (371)
T ss_pred CccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHH
Confidence 99999999998777766666666 22222221 11 111110 10 000 012333222233344444
Q ss_pred hHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCc
Q 015929 251 LFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAG--FFVGYLSAAICGFKE 328 (398)
Q Consensus 251 ~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~--f~~G~~lar~~gl~~ 328 (398)
.++.++.+.+. -.-+....+. .+..+... +....+..++ +.+|+++.+ .
T Consensus 209 ~~stv~avi~~-pl~s~~l~~~---------------------l~~~d~~~--v~~s~~~vv~~pl~lG~lL~~-----~ 259 (371)
T KOG2718|consen 209 TISTVLAVILT-PLLSILLGRA---------------------LIPVDALG--VIASILQVVGLPLALGLLLNK-----W 259 (371)
T ss_pred HHHHHHHHHHH-HHHHHhhchh---------------------hhcccchh--hhhhhhHHhHHHHHHHHHhcc-----c
Confidence 44443322211 1111111110 00001111 1113344555 788888874 3
Q ss_pred chhHHHhhhhhcchhHHHHHHHHHhcC---CccchHHHHHHHHHHHHHHHHHH
Q 015929 329 PQRRAISIEVGMQNSSLGVVLATAHFT---SSMVALPPAMSAVIMNIMGSTLG 378 (398)
Q Consensus 329 ~~~~al~~~~g~rN~~Lai~lA~~~f~---~p~~alp~~i~~l~q~i~~s~la 378 (398)
-.+++..++.++||.++...+-...|+ +...-.. .-|+++|......++
T Consensus 260 ~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~ 311 (371)
T KOG2718|consen 260 FPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLA 311 (371)
T ss_pred CccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 356788999999999999888887776 1222222 556666655544443
No 17
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.16 E-value=0.013 Score=57.23 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=89.5
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (398)
Q Consensus 68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (398)
+.++++ -....+=+++++++.-++|+.+...+..... -..+.+++.+|++|.+++.++-.+.+ +|.- ..+..
T Consensus 5 ~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l-~kg~---~l~~~ 80 (314)
T TIGR00793 5 RSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVL-RKSG---TLVVT 80 (314)
T ss_pred hhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhh-hhcc---eeeeH
Confidence 334454 2333444677888888999976553332110 12568999999999999999988887 4432 23456
Q ss_pred HHHHHHHHHHHHHHHcCCCh---hHHHHHHHHccCchhhHHH--H---HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 015929 144 QYTIMPTSGVIVSKFLGLPP---ALSVGLILLSCCPGGTASN--V---VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK 215 (398)
Q Consensus 144 ~~vl~Pll~~~l~~l~~l~~---~~~~gl~l~~~~P~~~~s~--v---~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ 215 (398)
++++-=++++.+.++++.+. .+..|+-.++..-+-.++| . ++.++|-+.+-... . ++++-.-|+...
T Consensus 81 K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~-~----i~sl~~GPf~TM 155 (314)
T TIGR00793 81 KIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF-V----LMSLESGPLMTM 155 (314)
T ss_pred HHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh-h----hhhhccCcHHHH
Confidence 88888888999999998655 2222333332222222222 3 35566555443332 2 233344466666
Q ss_pred HHhCcc--cccChHHHH
Q 015929 216 ILAGTY--VPVDAVKLS 230 (398)
Q Consensus 216 ll~g~~--v~vd~~~~~ 230 (398)
+.+|.. .+++++.+.
T Consensus 156 i~LG~sGlA~ip~~~lv 172 (314)
T TIGR00793 156 VILGTAGIASFEPHVFV 172 (314)
T ss_pred HHHhhccCCCCCHHHHH
Confidence 665543 456665543
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.01 E-value=0.73 Score=50.08 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI 154 (398)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~--~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~ 154 (398)
....++.|+++| |..+.+..+. ........+.++||..|+.++++++++. ++ + +...-..|.++.-+++++
T Consensus 32 vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~--~~-~-~~~~g~~qv~~~~~~~~~ 104 (621)
T PRK03562 32 VLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL--RR-S-IFGGGALQMVACGGLLGL 104 (621)
T ss_pred HHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH--HH-H-HHHHHHHHHHHHHHHHHH
Confidence 444455566555 5433332210 0113467889999999999999999875 22 2 333333455555455666
Q ss_pred HHHHcCCCh--hHHHHHHHHccCchhhHHHHHHHHhCCChhh
Q 015929 155 VSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIARGDVPL 194 (398)
Q Consensus 155 l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~l 194 (398)
+++.++.+. .+..|..+..++ ++....++...-.-+.+.
T Consensus 105 ~~~~~g~~~~~al~ig~~la~SS-taiv~~~L~e~~~l~t~~ 145 (621)
T PRK03562 105 FCMLLGLRWQVALLIGLGLALSS-TAIAMQAMNERNLMVTQM 145 (621)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCch
Confidence 667776654 344444444333 334444566554334443
No 19
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.65 Score=47.65 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHH-HcCCCh--hHHHHHHHHccCchhhHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP-TSGVIVSK-FLGLPP--ALSVGLILLSCCPGGTAS 181 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P-ll~~~l~~-l~~l~~--~~~~gl~l~~~~P~~~~s 181 (398)
....+.++||..|+..+.+++++.. |... .+...--+..| .++..... .++.+. ....|..+. ...++..+
T Consensus 62 aelGvi~LlF~~GLE~~~~~l~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~-~sS~~i~~ 136 (397)
T COG0475 62 AELGVVFLLFLIGLEFDLERLKKVG--RSVG--LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA-LSSTAIVL 136 (397)
T ss_pred HHHhHHHHHHHHHHCcCHHHHHHhc--hhhh--hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHHHHHHH
Confidence 4678999999999999999999873 2212 22222233444 33422222 355543 344444433 33344555
Q ss_pred HHHHHHhCCChhhH---HHHHHHHHHHHHhHHHHHHHHHhCccccc
Q 015929 182 NVVTLIARGDVPLS---IVMTMCTTLGAVLFTPLLTKILAGTYVPV 224 (398)
Q Consensus 182 ~v~t~~a~Gd~~la---~~l~~lstlla~~~~Pl~l~ll~g~~v~v 224 (398)
-++.+.-+=+.+.. .....+.-+.++....+...+..+...+.
T Consensus 137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~ 182 (397)
T COG0475 137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSV 182 (397)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccH
Confidence 56766555444444 33444555555555555444443333333
No 20
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.76 E-value=1.4 Score=49.56 Aligned_cols=68 Identities=4% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHHHHHHHHHh
Q 015929 314 FFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-----SSMVALPPAMSAVIMNIMGSTLGFFWR 382 (398)
Q Consensus 314 f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~-----~p~~alp~~i~~l~q~i~~s~la~~~~ 382 (398)
+..+++.++.+|.+.+|+.++++-...|- ...+.++..... +.....-+++..+...+.+.++..+++
T Consensus 365 ~~g~~l~a~~~g~~~~eal~lG~lm~~kG-~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 365 IMGTIIIAFFYTMPFREGITLGFLMNTKG-LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccc-HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 45567777889999999999988877774 444444443222 122222122222345555666655543
No 21
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.72 E-value=1.2 Score=48.20 Aligned_cols=84 Identities=19% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hHHHHHHHHccCchhhHHHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNV 183 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v 183 (398)
....+.++||.+|+.++++++++.. + + ....-..|.++.-++++++...++.+. .+..|+.+ +.+.++....+
T Consensus 60 aelGvv~LLF~iGLel~~~~l~~~~--~-~-~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~l-a~SSTaiv~~i 134 (601)
T PRK03659 60 SELGVVFLMFIIGLELNPSKLWQLR--R-S-IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGL-AMSSTAMALQL 134 (601)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4678999999999999999998752 2 2 222333444443334444555566653 23334322 23334444556
Q ss_pred HHHHhCCChhh
Q 015929 184 VTLIARGDVPL 194 (398)
Q Consensus 184 ~t~~a~Gd~~l 194 (398)
+...-.-+.+.
T Consensus 135 L~e~~~~~t~~ 145 (601)
T PRK03659 135 MREKGMNRSES 145 (601)
T ss_pred HHHcccccCch
Confidence 66654444433
No 22
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.57 E-value=0.16 Score=45.18 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-H
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V 183 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v 183 (398)
.......++-..+|++++.+++++.. +.....+...+....+.=..++.+.+..+.|... .+.+++|+|.... .
T Consensus 48 ~~~~~qviiG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~ 122 (156)
T TIGR03082 48 LLALAQVVIGILIGSRFTREVLAELK-RLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAA 122 (156)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHH
Confidence 44667777778899999999999874 4444333333333444444466677777776643 3688999999877 6
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 015929 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKI 216 (398)
Q Consensus 184 ~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~l 216 (398)
++...|.|....+....+=.++-.++.|++..+
T Consensus 123 ~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 123 LAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999999998888888889987654
No 23
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.32 E-value=0.38 Score=48.10 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSG 152 (398)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~ 152 (398)
..+-+++++++.-++|+... +++.... -....+++.+|++|.+++.++....+ +|.- ..++.++.+-=+++
T Consensus 17 m~vpl~~g~~i~tf~P~~~~-~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l-~~g~---~l~~~k~~~~~~~~ 91 (326)
T PRK05274 17 MLVPLLLGALINTFAPGALY-FGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVL-KKGG---TLLLTKFAVAALVG 91 (326)
T ss_pred eeHHHHHHHHHHHhCCccee-eCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhh-hhch---hHHHHHHHHHHHHH
Confidence 34446678888889998532 2221110 13568889999999999999998887 4432 23345666666667
Q ss_pred HHHHHHcCC
Q 015929 153 VIVSKFLGL 161 (398)
Q Consensus 153 ~~l~~l~~l 161 (398)
+...++++.
T Consensus 92 ~~~~~~~g~ 100 (326)
T PRK05274 92 VIAGKFIGE 100 (326)
T ss_pred HHhhhcchH
Confidence 777777764
No 24
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.70 E-value=3.7 Score=43.90 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS 156 (398)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~ 156 (398)
....++.|+++|-...+...... .........+.++||..|++++.+++++. + +....+...+.++.-++++++.
T Consensus 33 ivg~IlaGillGp~~lg~~~~~~-~~~~la~lGli~llF~~Gle~d~~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 107 (558)
T PRK10669 33 LVGYLLAGVLAGPFTPGFVADTK-LAPELAELGVILLMFGVGLHFSLKDLMAV--K--SIAIPGAIAQIAVATLLGMALS 107 (558)
T ss_pred HHHHHHHHHhhCccccccccchH-HHHHHHHHHHHHHHHHhHhcCCHHHHHHH--h--hHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666532222211111 01124477899999999999999999864 2 2333445556665555667677
Q ss_pred HHcCCC
Q 015929 157 KFLGLP 162 (398)
Q Consensus 157 ~l~~l~ 162 (398)
+.++.+
T Consensus 108 ~~~~~~ 113 (558)
T PRK10669 108 AVLGWS 113 (558)
T ss_pred HHhCCC
Confidence 777654
No 25
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=95.53 E-value=0.42 Score=45.34 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=73.4
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929 127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA 206 (398)
Q Consensus 127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla 206 (398)
++.+||+++.+..+.++--++--..++.+++++++|++....+.==+. ++..+.-.++..||+.++++..+.++-+++
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~G 163 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVII 163 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 333445667888888877777777888999999999988776655444 666677899999999999999999999999
Q ss_pred HhHHHHHHHHH
Q 015929 207 VLFTPLLTKIL 217 (398)
Q Consensus 207 ~~~~Pl~l~ll 217 (398)
.+.-|.++.++
T Consensus 164 ai~g~~llk~~ 174 (232)
T PRK04288 164 YALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHc
Confidence 99999999887
No 26
>PRK10711 hypothetical protein; Provisional
Probab=95.46 E-value=0.13 Score=48.69 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929 127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA 206 (398)
Q Consensus 127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla 206 (398)
++.+|++++.+..+...--++--..++.+++++++|++....+.==+. ++..+.-.++..||+.++++..+.++-+++
T Consensus 81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~G 158 (231)
T PRK10711 81 LHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILG 158 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 333445677888888877777778889999999999998877765554 666677799999999999999999999999
Q ss_pred HhHHHHHHHHH
Q 015929 207 VLFTPLLTKIL 217 (398)
Q Consensus 207 ~~~~Pl~l~ll 217 (398)
.+.-|.++.++
T Consensus 159 a~~g~~llk~~ 169 (231)
T PRK10711 159 AVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHc
Confidence 99999999887
No 27
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.40 E-value=0.13 Score=48.61 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=73.0
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHH
Q 015929 124 KDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTT 203 (398)
Q Consensus 124 ~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lst 203 (398)
.+=++.+||+++.+..+...--++--..++.+++++++|++....+.-=+. ++..+.-.++..|||.++++..+.++-
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitG 154 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTG 154 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 333444445667777777776666667788899999999988776654444 666667799999999999999999999
Q ss_pred HHHHhHHHHHHHHH
Q 015929 204 LGAVLFTPLLTKIL 217 (398)
Q Consensus 204 lla~~~~Pl~l~ll 217 (398)
+++..+-|.++.++
T Consensus 155 i~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 155 LLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998887
No 28
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.33 E-value=0.055 Score=54.58 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015929 300 GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIM 373 (398)
Q Consensus 300 ~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~~~f~~p~~alp~~i~~l~q~i~ 373 (398)
+.+.+...+...+++.+++...|.++.+++++.....+++..|+ .+++++....|++.... ...++.+.+.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~-~~~~~~~~~~i~ 136 (385)
T PF03547_consen 63 WFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVA-YAIIFDVVNNII 136 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhh-hehHHHHhhHHH
Confidence 44555556667888999999999999999999999999999999 88999999999752222 234444444443
No 29
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.26 E-value=0.16 Score=47.71 Aligned_cols=89 Identities=22% Similarity=0.286 Sum_probs=73.4
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929 127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA 206 (398)
Q Consensus 127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla 206 (398)
++.++++++.+..+....-++--...+.+++.+++|++....+.-=+. ++..+.-.++..|||.++++..+.++-+++
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~sLta~~VvitGi~G 147 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIPSLTAVFVVITGILG 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChHHHHHHHHHHHhhHH
Confidence 333346677788888877777777788899999999998877765555 666677799999999999999999999999
Q ss_pred HhHHHHHHHHH
Q 015929 207 VLFTPLLTKIL 217 (398)
Q Consensus 207 ~~~~Pl~l~ll 217 (398)
.+.-|.++.++
T Consensus 148 a~~g~~llk~~ 158 (215)
T PF04172_consen 148 AVLGPPLLKLL 158 (215)
T ss_pred HHhHHHHHhHc
Confidence 99999999886
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.61 E-value=0.35 Score=47.81 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH-HccCchhhHHH-HH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL-LSCCPGGTASN-VV 184 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l-~~~~P~~~~s~-v~ 184 (398)
...+.+..|.+|.+++++++.+. -...++++++. .++.=.+.|.+.++++.|+.....+-- .+..=|+.++. ..
T Consensus 195 ~f~I~f~~f~LG~~lnl~~I~~~---G~~GIlL~v~v-v~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAa 270 (312)
T PRK12460 195 PLLIPFFAFALGAGINLSMLLQA---GLAGILLGVLV-TIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAA 270 (312)
T ss_pred eEeHHHHHHHhcCCeeHHHHHHh---ChHHHHHHHHH-HHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHh
Confidence 44888888999999999999875 24556655554 334445677788988887765322220 12222222222 23
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
.-..+..++.+...+..+.+...++.|++..++..
T Consensus 271 dP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~k 305 (312)
T PRK12460 271 DPSLAPVAAAATAQVAASVIVTAILTPLLTSWVAK 305 (312)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577788888888888888889988887753
No 31
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.55 E-value=5.9 Score=39.95 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-HHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VVT 185 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v~t 185 (398)
.....+.=..+|.+++.+++.... +++-......+......-+.+|.+.+.-+.|... -+.+++|+|.+.. .++
T Consensus 61 ~~~q~ilG~~ig~~~t~s~l~~l~-~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA 135 (352)
T COG3180 61 KAGQVILGIMIGASLTPSVLDTLK-SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIA 135 (352)
T ss_pred HHHHHHHHHHHhhhcCHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHH
Confidence 334444455679999999998875 6666666666666666777788887765566544 2578999999888 799
Q ss_pred HHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 186 ~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
+-+|.|.++.+.+..+=-+.-..+.|+....+.+
T Consensus 136 ~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 136 QDYGADLRLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999985
No 32
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.37 E-value=1.3 Score=44.07 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-H
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V 183 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v 183 (398)
....+..++=..+|++.+.+++++.. |.....+...+.-....=+.++.+.++.+.|. .-.+++.+|+|.... .
T Consensus 205 l~~~aqv~iG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l 279 (318)
T PF05145_consen 205 LVNAAQVLIGASIGSRFTRETLRELR-RLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMAL 279 (318)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHH
Confidence 34556666667789999999999864 32222223333334444555677777777665 456789999999888 7
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 184 ~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
.+...|.|++.......+=.+.-.++.|++..++..
T Consensus 280 ~A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~r 315 (318)
T PF05145_consen 280 IALALGADVAFVAAHQVVRLLFVLLLAPFIARWLRR 315 (318)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999888753
No 33
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=94.09 E-value=2.4 Score=40.11 Aligned_cols=96 Identities=26% Similarity=0.314 Sum_probs=74.0
Q ss_pred CChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHH
Q 015929 121 LELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTM 200 (398)
Q Consensus 121 l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~ 200 (398)
+...+=++.++|+++.+..+.++--++-=..++.++++|++|++....++==+. ++..+.-.++.-||-.++++..+.
T Consensus 77 vPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi 154 (230)
T COG1346 77 VPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVI 154 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHH
Confidence 333343444457788888888876666667788999999999987665543332 555666789999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHh
Q 015929 201 CTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 201 lstlla~~~~Pl~l~ll~ 218 (398)
++-++..++-|.++..+-
T Consensus 155 ~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 155 LTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998883
No 34
>PRK05326 potassium/proton antiporter; Reviewed
Probab=93.45 E-value=13 Score=39.89 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhcccccchhh-hccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015929 76 LYPLYVTVGGVIACLKPSAFGWFV-QRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (398)
Q Consensus 76 ~~p~~i~~~~llgl~~P~~~~~~~-~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (398)
.....+++|+++|-..++...... +........+++++||..|++++.+++++..
T Consensus 32 ~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~ 87 (562)
T PRK05326 32 SLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPAL 87 (562)
T ss_pred HHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHH
Confidence 355566677777643222111000 0011145789999999999999999999875
No 35
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.86 E-value=1.1 Score=44.47 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHh-hcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 015929 75 SLYPLYVTVGGVIAC-LKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV 153 (398)
Q Consensus 75 ~~~p~~i~~~~llgl-~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~ 153 (398)
....+.+++|++++= .+ ..-++..+-..+.....+-.-...+|.++++.|+.+.- ++.+....+ .....=.+++
T Consensus 27 ~~~~~AillG~~i~n~~~-~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G---~~~~~~~~~-~v~~~~~~~~ 101 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFF-GLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG---WKGLLIIII-VVILTFLLTY 101 (305)
T ss_pred cHHHHHHHHHHHHhhhcc-CCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC---ccHHHHHHH-HHHHHHHHHH
Confidence 346777788887773 22 11122221111122356777778889999999998863 344433333 3344445567
Q ss_pred HHH-HHcCCChhHHHHHHHHccCchhhHHHH----HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 154 IVS-KFLGLPPALSVGLILLSCCPGGTASNV----VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 154 ~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v----~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
.++ +.+++|++.. -++-++.+=||.++.. ..+--+-|.++++..+.+-+.++++.+|.+-..+.
T Consensus 102 ~lg~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 102 WLGRRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 777 9999987642 2333334444444332 22334557899999999999999999999888763
No 36
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=91.80 E-value=8.5 Score=38.80 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-
Q 015929 104 ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN- 182 (398)
Q Consensus 104 ~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~- 182 (398)
|.....-.++....|++++...+++.. |--....+..+..+.+.=.+++.+.+..+.|.. ..+.+.+|+|....
T Consensus 237 wl~~va~~~iG~~IG~~f~~~~l~~~~-r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma 311 (352)
T COG3180 237 WLLAVAQALIGALIGSRFDRSILREAK-RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMA 311 (352)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHhH-hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHH
Confidence 334456666677789999999999863 322333344444455555567777777777654 35689999999888
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 183 v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
..+...+-|.++...+..+=-++-.++.|.+.+.+.
T Consensus 312 ~~A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 312 AIAAALGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556669999999999988888888888887764
No 37
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.57 E-value=1.2 Score=44.45 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS 156 (398)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~ 156 (398)
+.+.+++|++++.+ ++.......-..+.....+-+-....|.+++++|+.+.- ...+ ..........=++++.++
T Consensus 40 l~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G---~~~v-~~~~~~l~~t~~~~~~lg 114 (334)
T COG2855 40 LTLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG---GSGV-LIIAITLSSTFLFAYFLG 114 (334)
T ss_pred HHHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC---ccHH-HHHHHHHHHHHHHHHHHH
Confidence 66778888888843 332222211112233556777777789999999999862 2332 223333444446688899
Q ss_pred HHcCCChhHHHHHHHHccCchhhHHHHHH----HHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 157 KFLGLPPALSVGLILLSCCPGGTASNVVT----LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 157 ~l~~l~~~~~~gl~l~~~~P~~~~s~v~t----~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
+.+++|...+. ++=+++.=||.++..-+ .--+-|++.++..+.+-..++++.+|.+..++.
T Consensus 115 ~~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 115 KLLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 99999886532 33445555666554322 233446888888998888899999999887764
No 38
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=90.04 E-value=0.28 Score=49.29 Aligned_cols=148 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcccc---------cchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHH
Q 015929 68 YLLSTAASLYPLYVTVGGVIACLKPSA---------FGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSIL 138 (398)
Q Consensus 68 ~~l~~l~~~~p~~i~~~~llgl~~P~~---------~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~ 138 (398)
..++.+..-..+..+++.++|..-|-. .....+-.-......++.++...|-++-.+-=+.. .+.+.++
T Consensus 240 ~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~--~~~~~ii 317 (408)
T KOG2722|consen 240 VILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSA--LKTSVII 317 (408)
T ss_pred hhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcc--cCceEEE
Confidence 445555444566666777777654421 11111100012356889999999988855443333 3445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHc------C-CChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHH
Q 015929 139 FGCAAQYTIMPTSGVIVSKFL------G-LPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211 (398)
Q Consensus 139 ~~l~~~~vl~Pll~~~l~~l~------~-l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~P 211 (398)
..++.+++++|+.+.++.+.. . .||-....+++..++|++.....+|++.|--.+-+.....-+-.++.+..-
T Consensus 318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt 397 (408)
T KOG2722|consen 318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT 397 (408)
T ss_pred EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 456678999999999876653 3 678889999999999999999999999998877777777777777666666
Q ss_pred HHHHHH
Q 015929 212 LLTKIL 217 (398)
Q Consensus 212 l~l~ll 217 (398)
+|..++
T Consensus 398 vw~~~f 403 (408)
T KOG2722|consen 398 VWSVFF 403 (408)
T ss_pred HHHHHH
Confidence 665554
No 39
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=89.84 E-value=2.9 Score=41.94 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhc-ccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLK-PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIV 155 (398)
Q Consensus 77 ~p~~i~~~~llgl~~-P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l 155 (398)
..+.+++|++++-.+ |+.-.+..+-..+.....+=.-...+|.+++++|+.+.- ++.+...... .+..=++++.+
T Consensus 34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G---~~~l~~~~~~-v~~~~~~~~~~ 109 (335)
T TIGR00698 34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVG---PNEIVADTLI-LTSTFFLTVFL 109 (335)
T ss_pred HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhh---HHHHHHHHHH-HHHHHHHHHHH
Confidence 445666666666432 221111111001122356666777889999999998753 3333332222 22222334556
Q ss_pred H-HHcCCChhH----HHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 156 S-KFLGLPPAL----SVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 156 ~-~l~~l~~~~----~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
+ +.+++|++. +.|.-+|+++-....+++. +--+-|.++++..+.+-+.++++.+|++..++.
T Consensus 110 g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 110 GSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 5 789988764 3344444433222222221 233457889999999999999999999887664
No 40
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=87.67 E-value=1.9 Score=43.08 Aligned_cols=107 Identities=14% Similarity=0.195 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChh---HHHHHHHHccCchhhH-HH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA---LSVGLILLSCCPGGTA-SN 182 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~---~~~gl~l~~~~P~~~~-s~ 182 (398)
...+++.-|..|.+++.+++.+. ....+++++. +.++.+...+...++++.++. .+.+.. .+.+=|+.+ ..
T Consensus 202 ~~lLp~~~~~lG~~l~lq~i~~~---G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~g~~g~a~~tt-aG~aic~pAAva 276 (326)
T PRK05274 202 PVLIPFFAFALGNGIDLGTIITA---GLSGILLGVA-VVAVTGIPLYLADRLIGGGNGVAGAAAGST-AGNAVATPAAVA 276 (326)
T ss_pred EEEHHHHHHHHhcceeHhHHHhc---CCcchhhhhh-HhhccchhhHhHhheeecCCCcchHHHHHH-HHHHHHHHHHHH
Confidence 44888888999999999888764 3445544443 456667778888899965554 222211 111112221 12
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 183 v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
...-..++..+-++..+....+++.++.|++..++.
T Consensus 277 a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~ 312 (326)
T PRK05274 277 AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS 312 (326)
T ss_pred hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344566777777777777788888888887664
No 41
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=86.72 E-value=40 Score=34.46 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhh-HH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA----QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGT-AS 181 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~----~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~-~s 181 (398)
...++.+++.+-++.|.+++.+.- +| .+..+++ ..+-.+ +++.+..-.-.++.+...-.+++.-=+|. +-
T Consensus 58 ~~~vPlai~LlLl~~Dlr~i~~~g---~~-~l~~F~~~~~g~viG~~-va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~ 132 (378)
T PF05684_consen 58 TYLVPLAIPLLLLSADLRRILRLG---GR-LLLAFLIGAVGTVIGAV-VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNF 132 (378)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhh---HH-HHHHHHHHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHhcccCchhHH
Confidence 567777777777899888887653 22 2233222 222222 23333322212444555555555544433 33
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 182 ~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
..+.+..+-+.++-....+..++.+.+-+.+++.+-
T Consensus 133 ~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~ 168 (378)
T PF05684_consen 133 VAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP 168 (378)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368888888999999999999999988888777654
No 42
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.51 E-value=37 Score=33.85 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015929 81 VTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG 160 (398)
Q Consensus 81 i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~ 160 (398)
.+.|++.|=.-|+...... ..+......+.+.||++|+..+.+|+... |- . -+-+.+.|..+.-+.++++.++.+
T Consensus 37 L~AGv~~gpftpGFvad~~-La~~LAelGViLLmFgvGLhfslkdLLav--k~-i-AipgAl~qia~at~lg~gL~~~lg 111 (408)
T COG4651 37 LLAGVLAGPFTPGFVADQT-LAPELAELGVILLMFGVGLHFSLKDLLAV--KA-I-AIPGALAQIALATLLGMGLSSLLG 111 (408)
T ss_pred HHHHHhcCCCCCCcccchh-HHHHHHHhhHHHHHHhcchheeHHHHhhH--HH-H-hcchHHHHHHHHHHHHhHHHHHcC
Confidence 3344444434455432221 12224567889999999999999999865 21 1 234677788888889999999886
Q ss_pred CChhHHHHHHHHccCchhhHHH-HHHHHhC-------CChhhHH-HHHHHHHHHHHhHHHHHHHHHh
Q 015929 161 LPPALSVGLILLSCCPGGTASN-VVTLIAR-------GDVPLSI-VMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 161 l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~-------Gd~~la~-~l~~lstlla~~~~Pl~l~ll~ 218 (398)
.+- -.|+++--|...++.+. +-+.+-+ |..+..- .+-=+..+++.+..|.+-..+.
T Consensus 112 ws~--~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 112 WSF--GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred CCc--ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 542 22444434444444333 2232323 3332221 2223455666777787776664
No 43
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=83.35 E-value=43 Score=31.98 Aligned_cols=142 Identities=21% Similarity=0.298 Sum_probs=73.2
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhh--ccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHH
Q 015929 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQ--RGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQ 144 (398)
Q Consensus 68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~--~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~ 144 (398)
...+++ .-.....++.|+++| |..+....+ .........+.++||..|++++.+++++.. | +....+.. .
T Consensus 9 ~l~~~l~lP~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~-~--~~~~~~~~-~ 81 (273)
T TIGR00932 9 PLSRRLGIPSVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLR-K--AAFGVGVL-Q 81 (273)
T ss_pred HHHHHhCCCHHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-H--HHHHHHHH-H
Confidence 334444 223455566677666 433322211 011134678899999999999999999864 2 23333322 2
Q ss_pred HHHHHH-H-HHHHHHHcCCCh--hHHHHHHHHccCchhhHHHHHHHHh--CCC-hhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 145 YTIMPT-S-GVIVSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIA--RGD-VPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 145 ~vl~Pl-l-~~~l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v~t~~a--~Gd-~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
++.|. . ++...+.++.+. ....|..+....|.. ...++.++- +.+ .++......++-+++++.+-+.....
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~ 159 (273)
T TIGR00932 82 -VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLA 159 (273)
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33452 2 344556666543 233344333332222 122333322 222 33455556678888887776665554
Q ss_pred h
Q 015929 218 A 218 (398)
Q Consensus 218 ~ 218 (398)
.
T Consensus 160 ~ 160 (273)
T TIGR00932 160 T 160 (273)
T ss_pred c
Confidence 3
No 44
>PRK10711 hypothetical protein; Provisional
Probab=82.97 E-value=12 Score=35.54 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHH
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLGF 379 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la~ 379 (398)
.++....+=.+++...+++++|.+|.+++-..++.=- .=.+++|+.++....++| ..++-+++.+++-.+++..+-+
T Consensus 90 ~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pk--SVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk 167 (231)
T PRK10711 90 SIISICFIGSVVAMVTGTAVALWMGATPEIAASILPK--SVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLN 167 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhh--hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556788889999999999987765553321 223477777777766543 3444445555555555555544
Q ss_pred HHh
Q 015929 380 FWR 382 (398)
Q Consensus 380 ~~~ 382 (398)
+.|
T Consensus 168 ~~r 170 (231)
T PRK10711 168 AMR 170 (231)
T ss_pred HcC
Confidence 444
No 45
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=82.30 E-value=9.6 Score=35.87 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHH
Q 015929 302 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLG 378 (398)
Q Consensus 302 i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la 378 (398)
++....+=...+...+++++|.+|.+++...++ --|+. ++|+.++....+++ ..+.-+++.+++-.+++..+-
T Consensus 80 il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl----~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 80 ILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL----APKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----HHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 444444445778888899999999977655553 23444 77777777776654 344444555555555555555
Q ss_pred HHHh
Q 015929 379 FFWR 382 (398)
Q Consensus 379 ~~~~ 382 (398)
+++|
T Consensus 156 k~~~ 159 (215)
T PF04172_consen 156 KLLR 159 (215)
T ss_pred hHcc
Confidence 4444
No 46
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=81.98 E-value=12 Score=35.54 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHH
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLGF 379 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la~ 379 (398)
.+...+++=..++...+++++|.||++++-.+++.=-+ =.+++|+.++....+.| ..++-+++-+++-.+.|..+-+
T Consensus 92 ~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkS--vTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk 169 (230)
T COG1346 92 PILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKS--VTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLK 169 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcccc--cccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455567888899999999999888776654321 23477777777666544 4555556666777777777666
Q ss_pred HHhcc
Q 015929 380 FWRYI 384 (398)
Q Consensus 380 ~~~~~ 384 (398)
++|-|
T Consensus 170 ~~~i~ 174 (230)
T COG1346 170 LLRIR 174 (230)
T ss_pred HhccC
Confidence 66533
No 47
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=81.84 E-value=14 Score=35.04 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHH
Q 015929 302 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLG 378 (398)
Q Consensus 302 i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la 378 (398)
+.....+=...+...+++++|.+|.+++-.. ++ .-|+. ++|+.++....++| ..++-+++.+++-.+++..+-
T Consensus 90 Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~--Sl--~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll 165 (226)
T TIGR00659 90 IILNVAVGSVIAIISGTLLALLLGLGPEIIA--SL--LPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL 165 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH--Hh--hhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444457788889999999999855444 33 33444 77777777776654 344444444444444444444
Q ss_pred HHHh
Q 015929 379 FFWR 382 (398)
Q Consensus 379 ~~~~ 382 (398)
+++|
T Consensus 166 ~~~~ 169 (226)
T TIGR00659 166 RYFR 169 (226)
T ss_pred HHcC
Confidence 4443
No 48
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=80.89 E-value=7.3 Score=38.58 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHc------cCchh
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLS------CCPGG 178 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~-~l~~~~~~gl~l~~------~~P~~ 178 (398)
....++++-|..|.+++++++.+. -...+++++.. +++.-...+..-+.. +-++.. |.-.-. +.|..
T Consensus 199 ~~~lIPF~~f~lGa~inl~~i~~a---Gl~GIlLgv~~-~~vtg~~~~~~dr~i~~~~g~a--G~A~sstAGnavatPaa 272 (314)
T PF03812_consen 199 VPILIPFFGFALGAGINLSNIIKA---GLSGILLGVIV-VVVTGIPLYLADRLILKGNGVA--GAAISSTAGNAVATPAA 272 (314)
T ss_pred CCeeeehhhhhhcCCCCHHHHHHh---CcchHHHHHHH-HHHHhHHHHHHHHHHcCCCCce--eehHHhhhhhhhhhhHH
Confidence 456889999999999999998874 23456666654 334444455555654 333221 222211 12222
Q ss_pred hHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 179 TASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 179 ~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
.+.. --....-++.++..++.+.+++.+++|++..++..
T Consensus 273 iA~~--dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 273 IAAA--DPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred HHHh--ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11223456777888888999999999998888754
No 49
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=80.47 E-value=17 Score=34.62 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHH
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTL 377 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~l 377 (398)
.++...++=..++...+++++|.+|.+++-..++ --|+. ++|+.++....++| ..++-+++.+++-.+++..+
T Consensus 95 ~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl----~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~l 170 (232)
T PRK04288 95 QILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM----LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKF 170 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556778888999999999987655443 33444 77777777766554 34444445555555555544
Q ss_pred HHHHh
Q 015929 378 GFFWR 382 (398)
Q Consensus 378 a~~~~ 382 (398)
-++.|
T Consensus 171 lk~~~ 175 (232)
T PRK04288 171 LKLFR 175 (232)
T ss_pred HHHcC
Confidence 44443
No 50
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=80.40 E-value=1.1e+02 Score=34.55 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhcccccchhh----h-ccchhHHHHHHHHHHHHcccCChHHHHHH
Q 015929 75 SLYPLYVTVGGVIACLKPSAFGWFV----Q-RGPASYSLSLGLIMLAMGLTLELKDLISL 129 (398)
Q Consensus 75 ~~~p~~i~~~~llgl~~P~~~~~~~----~-~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~ 129 (398)
....+.+++|+++|...-+.+.... . .......+++.+.+|..|++++.+.+++.
T Consensus 39 s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~ 98 (810)
T TIGR00844 39 GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKH 98 (810)
T ss_pred cHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3466777777777754322222110 0 00012246899999999999999999875
No 51
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.22 E-value=41 Score=36.61 Aligned_cols=103 Identities=26% Similarity=0.354 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hHHHHHHHHccCchhhHHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v~ 184 (398)
...+++.+..+|+++++..+.+. +..++..++.-++.-++..++.++.++.+. .+..|+.+ ++.|-.+.+.
T Consensus 271 ~lll~lFFi~vG~~id~~~l~~~----~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L---~~~Gef~~vl 343 (621)
T PRK03562 271 GLLLGLFFIAVGMSIDFGTLLEN----PLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLL---GQGGEFAFVV 343 (621)
T ss_pred HHHHHHHHHHhhhhccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHH---hccccHHHHH
Confidence 46778888889999998777643 333334444557777888888888888754 45556544 3345555544
Q ss_pred HHHhC--C--ChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 185 TLIAR--G--DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 185 t~~a~--G--d~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
...+. | |.+....++ +..+++.+++|++..++
T Consensus 344 ~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 344 FGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 33322 1 344444444 45677888888877654
No 52
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=78.39 E-value=15 Score=36.40 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHccCchhhHHHHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG-LPPALSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~-l~~~~~~gl~l~~~~P~~~~s~v~ 184 (398)
....++++-|.+|.+++++++.+. -...+++++.... +.-...|..-++++ -++.. |.-.-.+.=-+++.+..
T Consensus 199 ~~~lIpFf~FaLGaginl~~i~~a---Gl~GIlLGl~v~~-vtG~~~~~~dr~~~g~~g~a--G~A~sstAGnAvatPaa 272 (314)
T TIGR00793 199 VQTLIPFFAFALGNTIDLGVIIQT---GLLGILLGVSVII-LTGIPLILADKFIGGGDGTA--GIAASSSAGAAVATPVL 272 (314)
T ss_pred CCeeeehhhhhhcCCCCHHHHHHh---CcchHHHHHHHHH-HHhHHHHHHHHHhcCCCCch--hhHHHHHHHHhhhhHHH
Confidence 456889999999999999988764 1345666665433 33334555556553 23222 33332221122222222
Q ss_pred HHHh----CCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929 185 TLIA----RGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219 (398)
Q Consensus 185 t~~a----~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g 219 (398)
...+ ...++.+...+..+.+...++.|++..++..
T Consensus 273 vA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~k 311 (314)
T TIGR00793 273 IAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSK 311 (314)
T ss_pred HHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2345666777777888888888988877653
No 53
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.82 E-value=59 Score=35.27 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHccCchhhHHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA--LSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~--~~~gl~l~~~~P~~~~s~v~ 184 (398)
...+++.+..+|++++++.+.+. +..++...+.-++.-++..++.++.++.+.. +..|+. ..|.|-.+.++
T Consensus 268 ~lll~lFFi~vGm~id~~~l~~~----~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl 340 (601)
T PRK03659 268 GLLLGLFFISVGMALNLGVLYTH----LLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVL 340 (601)
T ss_pred HHHHHHHHHHHhhhccHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHH
Confidence 56778888889999988777643 3444444455567778888888888887653 444544 35566666544
Q ss_pred HHHh---CC-ChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 185 TLIA---RG-DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 185 t~~a---~G-d~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
...+ |- +.+... ......+++.+++|++..++
T Consensus 341 ~~~a~~~g~i~~~~~~-~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 341 FSAASSQRLLQGDQMA-LLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHHHHhCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3332 22 222222 23556677778888877664
No 54
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=75.53 E-value=0.69 Score=46.49 Aligned_cols=107 Identities=21% Similarity=0.360 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHH--HHHHHH---HcC--CChhHHHHHHHHccCch
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS--GVIVSK---FLG--LPPALSVGLILLSCCPG 177 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll--~~~l~~---l~~--l~~~~~~gl~l~~~~P~ 177 (398)
.....+.++||..|.+++.+++++.. ++ .+..++. . .+.|.. ++.+.. ..+ .......|.++....|.
T Consensus 51 l~~i~l~~llF~~G~~~d~~~l~~~~-~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~ 125 (380)
T PF00999_consen 51 LAEIGLAFLLFEAGLELDIKELRRNW-RR--ALALGLV-G-FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPA 125 (380)
T ss_dssp SHHHHS--SSHHHHTTGGGG------------------------------------------------TTHHHHTT--HH
T ss_pred HHHHHHHHHHHHHHHhhccccccccc-cc--ccccccc-e-eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccccc
Confidence 56889999999999999999999874 33 2222222 2 222332 333332 223 33455666666666665
Q ss_pred hhHHHHHHHHhCCC---hhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 178 GTASNVVTLIARGD---VPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 178 ~~~s~v~t~~a~Gd---~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
.+... ..+..+.+ .........++.+.+.+.........
T Consensus 126 ~v~~~-l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~ 167 (380)
T PF00999_consen 126 IVSPV-LKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA 167 (380)
T ss_dssp HHHHH-H-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-------
T ss_pred chhhh-hhhhhcccccccchhhhhchhhccchhhhhhhhhhhh
Confidence 55544 32333323 33445566777888887777766665
No 55
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=75.05 E-value=1.3e+02 Score=32.52 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhc---cccc-chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCc-hHHHHHHHHHHHHHHHH
Q 015929 77 YPLYVTVGGVIACLK---PSAF-GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTS 151 (398)
Q Consensus 77 ~p~~i~~~~llgl~~---P~~~-~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll 151 (398)
..+.+++|+++|... +..- ..+.+ .......++.++|-.|.+++.+++++.+ +.- ..-..|.+++.+++-..
T Consensus 38 s~llil~GlllG~i~~~~~~~~~~~l~~--~lf~~~~LPpIlFe~g~~l~~~~f~~n~-~~Il~lAv~Gvlit~~~ig~~ 114 (559)
T TIGR00840 38 SVLLIVYGLLVGGIIKASPHIDPPTLDS--SYFFLYLLPPIVLDAGYFMPQRNFFENL-GSILIFAVVGTLINAFVIGLS 114 (559)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCCcCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777542 2110 01111 1234679999999999999999999886 221 11123455555555555
Q ss_pred HHHHHHHcC-------CChhHHHHHHHHccCchhhHH
Q 015929 152 GVIVSKFLG-------LPPALSVGLILLSCCPGGTAS 181 (398)
Q Consensus 152 ~~~l~~l~~-------l~~~~~~gl~l~~~~P~~~~s 181 (398)
.+.+....+ ....+..|.++.+.=|.++.+
T Consensus 115 l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVla 151 (559)
T TIGR00840 115 LYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLA 151 (559)
T ss_pred HHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHH
Confidence 554443222 223455566666665655554
No 56
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=74.60 E-value=25 Score=35.78 Aligned_cols=82 Identities=15% Similarity=0.224 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhH---HHhhhhhcchh-HHHHHHHHH-hcCC-ccchHHHHHHHHH-HHHHHHHH
Q 015929 305 SVLLLHFAGFFVGYLSAAICGFKEPQRR---AISIEVGMQNS-SLGVVLATA-HFTS-SMVALPPAMSAVI-MNIMGSTL 377 (398)
Q Consensus 305 ~~~ll~~~~f~~G~~lar~~gl~~~~~~---al~~~~g~rN~-~Lai~lA~~-~f~~-p~~alp~~i~~l~-q~i~~s~l 377 (398)
.+..+...+..+|..+++.+++++.-.. +++++.|.-+. +.|-.+... .+++ ..+++..+-..++ -.++|..+
T Consensus 99 ~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi 178 (368)
T PF03616_consen 99 IAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPI 178 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888898876553 35666443333 233223333 2222 2344444444444 46778888
Q ss_pred HHHHhccCC
Q 015929 378 GFFWRYIDP 386 (398)
Q Consensus 378 a~~~~~~~~ 386 (398)
+++.-||.+
T Consensus 179 ~~~lirk~~ 187 (368)
T PF03616_consen 179 ANWLIRKGK 187 (368)
T ss_pred HHHHHHcCC
Confidence 877755543
No 57
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=74.52 E-value=91 Score=30.62 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCcc
Q 015929 314 FFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSM 358 (398)
Q Consensus 314 f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~ 358 (398)
-.+.+.+.+.++++.++.++...++++--...+..+|..|-.|++
T Consensus 252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~ 296 (321)
T TIGR00946 252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVE 296 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHH
Confidence 334455566778999999999999999988888999988876654
No 58
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=72.85 E-value=50 Score=26.90 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=38.1
Q ss_pred HHhh-CCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 015929 321 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 389 (398)
Q Consensus 321 ar~~-gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~ 389 (398)
.|.. |.+-.|| .++..+=.-|....+.+-...++++...=...+|.++-.+..-.++++..|++..++
T Consensus 22 ~Rli~GPt~~DR-vvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~g~~~~~ 90 (94)
T PRK12600 22 IRVIKGPTLADR-VVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEKGKVIER 90 (94)
T ss_pred HHhhcCccHHHH-HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 3543 5666664 455554444555555555566665543333456666666666666777765554443
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=72.67 E-value=72 Score=34.37 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQR-PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~-p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s 181 (398)
+..+.+-+|++|++.-++=++.. +|+ .+..+.+++. .++.=++++++.++|++|+..+.|++-=+..-+....
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~l-~~~g~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~ 134 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFASL-KKDGLREIILALVF-AVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIG 134 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHHH-HhccHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHH
Confidence 57788888999999988877765 344 2433333333 3444466788889999999999998876655444433
No 60
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=72.53 E-value=24 Score=32.59 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHH--HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 015929 80 YVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKD--LISLFMQRPLSILFGCAAQYTIMPTSGVIVSK 157 (398)
Q Consensus 80 ~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~--l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~ 157 (398)
.+.+|+++|+........... ..+..+-+++|.+|+++..++ +++..+-+++.+.+.+.. .+-.=+.++....
T Consensus 4 ~li~Gi~lG~~~~~~~~~~~~----~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllgg~l~~~ 78 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLIDK----ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLGGLLASL 78 (191)
T ss_pred eHHHHHHHHHHhccccccccc----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 467888899888765333321 567899999999999987653 333210123333322222 2222223444555
Q ss_pred HcCCChhHHHHHHHHccCchhhHHH-HHHHHhCCChhhHHHHHHHH---HHHHHhHHHHHHHHH
Q 015929 158 FLGLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCT---TLGAVLFTPLLTKIL 217 (398)
Q Consensus 158 l~~l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~Gd~~la~~l~~ls---tlla~~~~Pl~l~ll 217 (398)
+++.+. ..++.+-+..===+.|. .+++. +|.++....-..+ =+++++.+|++...+
T Consensus 79 ll~~~~--~~~lav~sG~GwYSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 79 LLGLSL--KESLAVASGFGWYSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred HhcCCH--HHHHHHHccCcHHHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 565543 33443333321112333 33333 3334443333222 257888899888833
No 61
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=72.36 E-value=80 Score=31.62 Aligned_cols=131 Identities=22% Similarity=0.219 Sum_probs=67.6
Q ss_pred chHHHHHHHHHH-hhHHHHHHHHHHHHHhhccccc-chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcC-chHHH
Q 015929 62 AKPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAF-GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQR-PLSIL 138 (398)
Q Consensus 62 ~~~~~~~~l~~l-~~~~p~~i~~~~llgl~~P~~~-~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~-p~~l~ 138 (398)
++.+|.++++.. .+--.+.++.+.++|+...... ....+.......-.+.+.|+-||+. ..+++++.- +. ++.+.
T Consensus 163 ~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~-A~~rL~~l~-~~g~~li~ 240 (327)
T PF05982_consen 163 EGISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLV-AARRLRDLR-KVGWFLIA 240 (327)
T ss_pred ccccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHHHHHHHHHHHhhHH-HHHhhHHHH-hhhHHHHH
Confidence 345577777776 3334555555667888775432 2222221113466777778888864 445555531 21 22222
Q ss_pred HHHHHHHHHHHHH----HHHHHHHcCCChhHHHHHHHHccCchhhHHH--HHHHHhCCChhhHHHHH
Q 015929 139 FGCAAQYTIMPTS----GVIVSKFLGLPPALSVGLILLSCCPGGTASN--VVTLIARGDVPLSIVMT 199 (398)
Q Consensus 139 ~~l~~~~vl~Pll----~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~--v~t~~a~Gd~~la~~l~ 199 (398)
. =+++|++ +++++++.+++..-+.-+..++++-.=.+++ +-...-+.|..+.+.+.
T Consensus 241 F-----gi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~S 302 (327)
T PF05982_consen 241 F-----GILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTAS 302 (327)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHH
Confidence 2 2456765 4556777788765444443333322222333 34445566666655544
No 62
>PRK04972 putative transporter; Provisional
Probab=71.52 E-value=1.1e+02 Score=32.98 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQR-PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV 183 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~-p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v 183 (398)
.+..+.+.++++|++--.+=+... +++ .+..+.+.+. .++.-++++.+.++|++|+..+.|++-=+..-++.....
T Consensus 62 ~~~gl~lF~~~vG~~~Gp~F~~~l-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a 138 (558)
T PRK04972 62 LNLGFMLFIFCVGVEAGPNFFSIF-FRDGKNYLMLALVM-VGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGA 138 (558)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHH
Confidence 356777777888988777666554 233 2333333332 333334577788889999999999876655544444443
No 63
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=71.51 E-value=57 Score=26.94 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=41.0
Q ss_pred HHhh-CCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 015929 321 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 392 (398)
Q Consensus 321 ar~~-gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~~~~ 392 (398)
.|.. |.+..| |.++..+=.-|....+++-...++++...=...++.++-.+..-.++++..|++..+++++
T Consensus 26 ~Rlv~GPt~~D-RivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~g~~~~~~~~ 97 (100)
T PRK12657 26 FRLIKGPTTAD-RVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGGGHVFNGNNK 97 (100)
T ss_pred HHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCc
Confidence 3544 555566 5566665555555555555556655543333456666666666667787766665555433
No 64
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=64.18 E-value=1.1e+02 Score=34.80 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChh--HHHHHHHHccCchhhHHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA--LSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~--~~~gl~l~~~~P~~~~s~v~ 184 (398)
..++++.+..+|++++...+.+. ..+.......++.++.--+..++.++.++.+.. +..|+++.. -+ ....+.
T Consensus 325 ~lflPlFFv~vGl~idl~~l~~~--~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~--kG-~~~Lii 399 (832)
T PLN03159 325 GLLLPLFFAISGLKTNVTKIQGP--ATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNT--KG-LVEMIV 399 (832)
T ss_pred HHHHHHHHHHhhheeeHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc--cc-HHHHHH
Confidence 56778888889999988766431 011111111122233333445566677776654 444544432 23 333322
Q ss_pred HHH--hCC--ChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 185 TLI--ARG--DVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 185 t~~--a~G--d~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
... ..| |.+.-..++....+.+.++.|++..++
T Consensus 400 ~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 400 LNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 221 222 333334444455567888888887765
No 65
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=63.62 E-value=55 Score=33.71 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcchhHH---HhhhhhcchhHHHHHHH--HH-hcCC-ccchHHH-HHHHHHHHHHHH
Q 015929 304 LSVLLLHFAGFFVGYLSAAICGFKEPQRRA---ISIEVGMQNSSLGVVLA--TA-HFTS-SMVALPP-AMSAVIMNIMGS 375 (398)
Q Consensus 304 l~~~ll~~~~f~~G~~lar~~gl~~~~~~a---l~~~~g~rN~~Lai~lA--~~-~f~~-p~~alp~-~i~~l~q~i~~s 375 (398)
..+..+...++.+|..+++.+|+++.-..- ++++.| +.++.|..=. .. -+++ .++++.. .++-+.-.++|.
T Consensus 98 ~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GG-HGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGg 176 (398)
T TIGR00210 98 ATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGG-HGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGG 176 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCC-CcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999999999998876444 678744 4444443322 21 2322 2333333 455566677788
Q ss_pred HHHHHHhccCCC
Q 015929 376 TLGFFWRYIDPS 387 (398)
Q Consensus 376 ~la~~~~~~~~~ 387 (398)
.++++..||.+.
T Consensus 177 pi~~~lirk~~l 188 (398)
T TIGR00210 177 PVAKFLIIRNKL 188 (398)
T ss_pred HHHHHHHHcCCC
Confidence 888887666544
No 66
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.18 E-value=1.8e+02 Score=31.14 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHHHccCchhhHHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLP--PALSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~--~~~~~gl~l~~~~P~~~~s~v~ 184 (398)
...+++.+...|+++++..+.+. +..++..++..++.-.+..+..++.++.+ ..+..|+.+.. .|-.+.+.
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~~----~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~---~Gef~lii 351 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQQ----PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQ---IGEFAFIL 351 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhc---ccchHHHH
Confidence 45777777788999988877543 23333334445566666677777777554 45666666543 34444433
Q ss_pred HH---HhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 185 TL---IARGDVPLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 185 t~---~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
.. ..|==.+-.-....+.++++.+++|+++...
T Consensus 352 ~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 352 AGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 3332222233345666778888889876654
No 67
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=60.63 E-value=1.9e+02 Score=31.27 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcccCChHHHHHHHhcC-chHHHHHHHHHHHHHH-HHHHHHH-HHcCCChhHHHHHHHHccCchhhHHHHH
Q 015929 108 LSLGLIMLAMGLTLELKDLISLFMQR-PLSILFGCAAQYTIMP-TSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVV 184 (398)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~-p~~l~~~l~~~~vl~P-ll~~~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v~ 184 (398)
..+.+-++++|++--.+=+. .++++ .+.++.+.+ ..+.| ++++.++ +++++++....|.+-=+-.-++.... .
T Consensus 452 ~GL~lFla~vG~~aG~~f~~-~l~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~-a 527 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVT-AIKEMGLTLFLLGIV--VTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGA-V 527 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHH-HHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHH-H
Confidence 45555566677766554444 44232 233333444 34455 5577777 68999999999985433333333333 3
Q ss_pred HHHhCCC---hhhHHHHHHHHHHHHHhHHHHHHH
Q 015929 185 TLIARGD---VPLSIVMTMCTTLGAVLFTPLLTK 215 (398)
Q Consensus 185 t~~a~Gd---~~la~~l~~lstlla~~~~Pl~l~ 215 (398)
....+-| ..+++.+ .+++++=++..|+++.
T Consensus 528 ~~~~~~~~~~~gYa~~Y-p~~~i~~il~~~~iv~ 560 (562)
T TIGR03802 528 LERAGSSVPALGYTITY-ALGNVLLTLLGPLIVA 560 (562)
T ss_pred HHhcCCCCcccchHhHH-HHHHHHHHHHHHHHHH
Confidence 3344333 2222222 5566666666676554
No 68
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.16 E-value=35 Score=26.28 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------CCCcchhHHHhhhhhcchh
Q 015929 304 LSVLLLHFAGFFVGYLSAAIC---------GFKEPQRRAISIEVGMQNS 343 (398)
Q Consensus 304 l~~~ll~~~~f~~G~~lar~~---------gl~~~~~~al~~~~g~rN~ 343 (398)
+..++..+.|+..||+++|.. ..+++.-|++....|.|-+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~~iR~M~~qmGqKpS 56 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQKPS 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCch
Confidence 333444577888999999863 2455556777777776644
No 69
>COG3329 Predicted permease [General function prediction only]
Probab=55.93 E-value=55 Score=32.53 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=32.4
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHhhcccccch-hhhc-cchhHHHHHHHHHHHHcccCChHHHHHH
Q 015929 68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGW-FVQR-GPASYSLSLGLIMLAMGLTLELKDLISL 129 (398)
Q Consensus 68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~-~~~~-~~~~~~~~l~~~mf~~Gl~l~~~~l~~~ 129 (398)
++++.. ..--.+.++.+.++|+.--..... ..+. .| ...-.+.+.|+-||++- .+++++.
T Consensus 209 ell~Esflnpal~lllggl~iGlitGe~g~~vl~~F~~~-lFqGvL~lflL~MGm~A-~rrl~el 271 (372)
T COG3329 209 ELLQESFLNPALVLLLGGLAIGLITGEQGESVLKPFFDP-LFQGVLCLFLLDMGMTA-GRRLKEL 271 (372)
T ss_pred HHHHHHHcCchHHHHHHHHHHhheeccCchhhhhhhhHH-HHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 555554 333455556666788765332221 1211 12 34567777788888764 4555554
No 70
>PRK00523 hypothetical protein; Provisional
Probab=55.78 E-value=38 Score=26.23 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---------CCCcchhHHHhhhhhcchh
Q 015929 301 VIILSVLLLHFAGFFVGYLSAAIC---------GFKEPQRRAISIEVGMQNS 343 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar~~---------gl~~~~~~al~~~~g~rN~ 343 (398)
.+++..++..++|.+.|++++|.. ..+++.-|++....|.|-+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPS 57 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCcc
Confidence 334444555788999999999863 2455567777777776643
No 71
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=54.74 E-value=3.3e+02 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHHHHHH-HHHHHHHcCCChhHHHHHHHHccCch
Q 015929 145 YTIMPTS-GVIVSKFLGLPPALSVGLILLSCCPG 177 (398)
Q Consensus 145 ~vl~Pll-~~~l~~l~~l~~~~~~gl~l~~~~P~ 177 (398)
|-++|.+ +|-.++-|+.++-++..+-.+-+.|.
T Consensus 154 FyFLPi~ia~saAkkf~~np~lg~~ig~~L~~P~ 187 (627)
T PRK09824 154 FFFFPIILGYTAGKKFGGNPFTAMVIGGALVHPL 187 (627)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHChh
Confidence 4556765 78889999999977666666666663
No 72
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=54.68 E-value=71 Score=32.83 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcchhH---HHhhhhhcchh-HHHHHHHHHhcCC-ccchHHHH-HHHHHHHHHHHHH
Q 015929 304 LSVLLLHFAGFFVGYLSAAICGFKEPQRR---AISIEVGMQNS-SLGVVLATAHFTS-SMVALPPA-MSAVIMNIMGSTL 377 (398)
Q Consensus 304 l~~~ll~~~~f~~G~~lar~~gl~~~~~~---al~~~~g~rN~-~Lai~lA~~~f~~-p~~alp~~-i~~l~q~i~~s~l 377 (398)
..+..+..++..+|-.+++.+|.|+--.. +++++.|.-|. +-+=......+++ .++++.++ ++-+.--++|..+
T Consensus 100 ~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpv 179 (404)
T COG0786 100 ATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPV 179 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHH
Confidence 34455677888999999999999775433 56787666555 3333333344443 35666654 4444556778888
Q ss_pred HHHHhccCCCCCCCCCC
Q 015929 378 GFFWRYIDPSDSKTSPK 394 (398)
Q Consensus 378 a~~~~~~~~~~~~~~~~ 394 (398)
+++..+|.+.+.+++|+
T Consensus 180 a~~li~k~~l~~~~~~~ 196 (404)
T COG0786 180 ARWLIKKNKLKPDPTKD 196 (404)
T ss_pred HHHHHHhcCCCCCCCCC
Confidence 98887666555444333
No 73
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=54.38 E-value=13 Score=26.25 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCccC
Q 015929 373 MGSTLGFFWRYIDPSDSKTSPKTVD 397 (398)
Q Consensus 373 ~~s~la~~~~~~~~~~~~~~~~~~~ 397 (398)
.-+-++.+||||-..+-+++|+.+|
T Consensus 7 llstlamlwrrrfanrvqpeps~vd 31 (54)
T PF15201_consen 7 LLSTLAMLWRRRFANRVQPEPSGVD 31 (54)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCC
Confidence 3456788999998888878777776
No 74
>PRK01844 hypothetical protein; Provisional
Probab=52.18 E-value=47 Score=25.75 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------CCCcchhHHHhhhhhcchh
Q 015929 304 LSVLLLHFAGFFVGYLSAAIC---------GFKEPQRRAISIEVGMQNS 343 (398)
Q Consensus 304 l~~~ll~~~~f~~G~~lar~~---------gl~~~~~~al~~~~g~rN~ 343 (398)
+..++..++|.+.|++++|.. ..+++.-|++....|.|-+
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkPS 56 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPS 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCcc
Confidence 344455678899999999863 2455556777777776643
No 75
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=51.57 E-value=1.3e+02 Score=30.00 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929 140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA 206 (398)
Q Consensus 140 ~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla 206 (398)
..++.++..-.++|.+++.++++.+....+.+...+--...+..++...=+|.++++.......++.
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e 317 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIE 317 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhe
Confidence 3445567777889999999999999999999988887666666566555555565555555444443
No 76
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=51.15 E-value=81 Score=31.71 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKF 158 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l 158 (398)
..+.++.+.|.++|++.+++++++. .+|.++.+++. ++..-..++.+.++
T Consensus 281 ~~~~ll~~AmaaiGl~t~~~~l~~~---G~kp~~~g~i~-~~~l~~~~~~l~~~ 330 (335)
T TIGR00698 281 LDTFLLATAMAALGLTTNVSAVKKA---GVKPLFASYAG-YLWLVGGGFVLNYL 330 (335)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHc---CchHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3467999999999999999999875 45666666665 33334455555443
No 77
>PRK03818 putative transporter; Validated
Probab=49.91 E-value=3.6e+02 Score=29.02 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN 182 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~ 182 (398)
+..+.+.++++|++--.+=+... +++- +..+.+++. .++.-++++.+.+++++|+....|++-=+..-+.....
T Consensus 64 ~~gl~lFv~~vGl~~Gp~f~~~l-~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~a 138 (552)
T PRK03818 64 EFGLILFVYTIGIQVGPGFFSSL-RKSGLRLNLFAVLI-VILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGA 138 (552)
T ss_pred HHHHHHHHHHHhhcccHHHHHHH-HHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHH
Confidence 46777778888988877766654 2332 333333333 23333446777788999999998887655544444433
No 78
>PRK03818 putative transporter; Validated
Probab=49.66 E-value=1.2e+02 Score=32.58 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHH
Q 015929 302 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVL 349 (398)
Q Consensus 302 i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~l 349 (398)
..+..++..+.+..+++...+.+|++... .+=.++.++-|+ +++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 93 LNLFAVLIVILGGLVTAILHKLFGIPLPV-MLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHhhccccccHHHHHHH
Confidence 34445556777777788888889998663 344454444444 555554
No 79
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=48.99 E-value=17 Score=36.84 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh---HHHHHHHHHh-----cCCc-cchHHHHHHHHHHHHHHHH
Q 015929 306 VLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS---SLGVVLATAH-----FTSS-MVALPPAMSAVIMNIMGST 376 (398)
Q Consensus 306 ~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~---~Lai~lA~~~-----f~~p-~~alp~~i~~l~q~i~~s~ 376 (398)
+.+-.++|..+||.+.+.++.+++.+.=+.-+++.+|+ .+++.-|.-. |+|+ ..+-=.+.|..+-+-.|.+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 34456889999999999999999998877777777777 5666655543 3332 2333345677776677777
Q ss_pred HHH
Q 015929 377 LGF 379 (398)
Q Consensus 377 la~ 379 (398)
+.+
T Consensus 162 l~w 164 (408)
T KOG2722|consen 162 LRW 164 (408)
T ss_pred EEE
Confidence 653
No 80
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=48.98 E-value=2e+02 Score=25.87 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHccCchhhHHHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRP-LSILFGCAAQYTIMPTSGVIVSK-FLGLPPALSVGLILLSCCPGGTASNV 183 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p-~~l~~~l~~~~vl~Pll~~~l~~-l~~l~~~~~~gl~l~~~~P~~~~s~v 183 (398)
-+..+.+-++++|++--.+=+ +.++++. +....+.+. .++-.++++.+.+ ++++|+....|.+-=+-.-++.....
T Consensus 56 ~~~GL~lFl~~VGl~aG~~F~-~~l~~~G~~~~~~~~~i-~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A 133 (169)
T PF06826_consen 56 RQLGLALFLAAVGLSAGPGFF-SSLKRGGLKLLLLGVII-TLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAAA 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHHH
Confidence 366778888888888766444 4443332 333344443 3344455777887 89999999999876554444444443
Q ss_pred HHHHhCCC
Q 015929 184 VTLIARGD 191 (398)
Q Consensus 184 ~t~~a~Gd 191 (398)
--...+.|
T Consensus 134 ~~~~~~~~ 141 (169)
T PF06826_consen 134 QEAISDSG 141 (169)
T ss_pred HHhhhcCC
Confidence 33324444
No 81
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=48.62 E-value=3.6e+02 Score=28.68 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcccccchhhhccc-hhHHHHHHHHHHHHcccCChHHHHHHH
Q 015929 77 YPLYVTVGGVIACLKPSAFGWFVQRGP-ASYSLSLGLIMLAMGLTLELKDLISLF 130 (398)
Q Consensus 77 ~p~~i~~~~llgl~~P~~~~~~~~~~~-~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (398)
....++.|+++|.. |. .... ...| ......++.++|..|.+++.+++++..
T Consensus 25 ~v~lil~Gi~lg~~-~~-~~~~-~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLGLA-GL-LPEV-PLDREIVLFLFLPPLLFEAAMNTDLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHHhc-cc-cCCC-CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44555667777743 11 1001 0111 134678999999999999999999864
No 82
>COG0679 Predicted permeases [General function prediction only]
Probab=44.65 E-value=3.2e+02 Score=26.87 Aligned_cols=224 Identities=16% Similarity=0.064 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHH-HH
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS-NV 183 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s-~v 183 (398)
.+..+++.+.|..-.+-+.+...+ .+.+...++...+..=+..+...+.++.+.+...+..+.+.-|-...- .-
T Consensus 40 v~~~~lP~LlF~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~p 114 (311)
T COG0679 40 VVYVALPALLFNSIATADLSGLAD-----LGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLP 114 (311)
T ss_pred HHHHHhHHHHHHHHHhCCcchhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHH
Confidence 457888998988777766655522 122333333333333222333334557777777777777777755533 34
Q ss_pred HHHHhCCChhhHHHHHHHH-HHHHHhHHHHHHHHHhCcccccChHHHHHHHH-----------------HHHHHHHHHHh
Q 015929 184 VTLIARGDVPLSIVMTMCT-TLGAVLFTPLLTKILAGTYVPVDAVKLSISTL-----------------QSAFPAAVKVV 245 (398)
Q Consensus 184 ~t~~a~Gd~~la~~l~~ls-tlla~~~~Pl~l~ll~g~~v~vd~~~~~l~ll-----------------r~~~p~~~~~i 245 (398)
.+...-||..++....... ......+.-.+...-.+...+...+.....++ .-..|+..++.
T Consensus 115 i~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~ 194 (311)
T COG0679 115 VALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTA 194 (311)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 6666667766655544322 22222222222222222222212222222221 12234333222
Q ss_pred cccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 015929 246 TPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLL-LHFAGFFVGYLSAAIC 324 (398)
Q Consensus 246 ~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~l-l~~~~f~~G~~lar~~ 324 (398)
.+.......-+.++.+....+.+ .... . .. ........ =.++.-.+.+..++.+
T Consensus 195 ~~~l~~a~~pl~li~lG~~L~~~--~~~~--------------------~--~~-~~~~~~~~~kll~~Pl~~~~~~~~~ 249 (311)
T COG0679 195 VDLLASAASPLALIALGLSLAFL--KLKG--------------------S--KP-PIILIALSLKLLLAPLVALLVAKLL 249 (311)
T ss_pred HHHHHHhhhhHHHHHHhhhcchh--hhcc--------------------c--cc-hhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222222212222222222211 0000 0 00 11111111 1234445556677888
Q ss_pred CCCcchhHHHhhhhhcchhHHHHHHHHHhcCCcc
Q 015929 325 GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSM 358 (398)
Q Consensus 325 gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~ 358 (398)
|++..+..++-.+.++--...+..+|..+-.|+.
T Consensus 250 ~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~ 283 (311)
T COG0679 250 GLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPR 283 (311)
T ss_pred CCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChH
Confidence 9998888888888888888888888888665554
No 83
>PRK04972 putative transporter; Provisional
Probab=43.91 E-value=4.5e+02 Score=28.36 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcC-chHHHHHHHHHHHHHH-HHHHHHH-HHcCCChhHHHHHHHHccCchhhHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQR-PLSILFGCAAQYTIMP-TSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNV 183 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~-p~~l~~~l~~~~vl~P-ll~~~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v 183 (398)
...+.+.+..+|++--.+ +.+.+++. .+.++.+.++ .+.| ++++.++ +++++++....|. ++++.=.+..-..
T Consensus 446 ~~GL~lFla~vGl~aG~~-f~~~~~~~g~~~~~~g~~~--t~~~~~~~~~~~~~~~k~~~~~~~G~-~aG~~t~~~~l~~ 521 (558)
T PRK04972 446 EFGLMVFMAGVGLSAGSG-INNGLGAVGGQMLIAGLIV--SLVPVVICFLFGAYVLRMNRALLFGA-IMGARTCAPAMEI 521 (558)
T ss_pred HHhHHHHHHHHHHhhhHH-HHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHH-HhCCCCCcHHHHH
Confidence 344555555566654443 44444232 2333344443 3334 4466677 6789999999998 4444433333333
Q ss_pred HHHHhCCCh---hhHHHHHHHHHHHHHhHHHHHHH
Q 015929 184 VTLIARGDV---PLSIVMTMCTTLGAVLFTPLLTK 215 (398)
Q Consensus 184 ~t~~a~Gd~---~la~~l~~lstlla~~~~Pl~l~ 215 (398)
.....+-|. .|++.. .+++++-++..|+++.
T Consensus 522 ~~~~~~~~~~~~gYa~~y-p~~~il~~l~~~~iv~ 555 (558)
T PRK04972 522 ISDTARSNIPALGYAGTY-AIANVLLTLAGTLIVI 555 (558)
T ss_pred HHhhcCCCCcccccHhHH-HHHHHHHHHHHHHHHH
Confidence 444444332 233222 4566666666776655
No 84
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=43.90 E-value=1.3e+02 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.122 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHH
Q 015929 234 LQSAFPAAVKVVTPFTPLFAVLMSSL 259 (398)
Q Consensus 234 lr~~~p~~~~~i~~~~~~is~~~lll 259 (398)
+|++.|+..+.+..+.+.+..=|+++
T Consensus 87 L~a~~p~l~~~LGiflpLIv~NCiVL 112 (231)
T PRK12405 87 MNAYAYGLYQSLGIFIPLIVTNCIIL 112 (231)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 58889999888888888876544444
No 85
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=43.06 E-value=1.5e+02 Score=29.33 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHH-HhhCCCcchhHHHhhhhhcchhHHHHHHHHH
Q 015929 305 SVLLLHFAGFFVGYLSA-AICGFKEPQRRAISIEVGMQNSSLGVVLATA 352 (398)
Q Consensus 305 ~~~ll~~~~f~~G~~la-r~~gl~~~~~~al~~~~g~rN~~Lai~lA~~ 352 (398)
..++.....+.++|+++ |++|+|++.+.-++-.++.--.+-.++++..
T Consensus 88 ~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~ 136 (305)
T PF03601_consen 88 IIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPV 136 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccc
Confidence 34445667788899999 9999998877777666666655555555543
No 86
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=43.00 E-value=1.2e+02 Score=29.89 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHHHhcC-CccchHHHHHHHHHHHHHHHHHHHHHhc
Q 015929 309 LHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFT-SSMVALPPAMSAVIMNIMGSTLGFFWRY 383 (398)
Q Consensus 309 l~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~~~f~-~p~~alp~~i~~l~q~i~~s~la~~~~~ 383 (398)
..+++-..+...++.+|.|++|.+.=-+ |. |. -+|+++.. +++ ++...+..++.++.-.++...+.++.++
T Consensus 39 ~~llg~~~stltA~ll~~~~~~i~~GL~--Gf-Ng~LvG~al~~-f~~~~~~~~~l~~~ga~ls~~v~~~l~~~~~~ 111 (301)
T PF03253_consen 39 GALLGALISTLTARLLGYDRDDIRNGLY--GF-NGALVGLALGV-FLPPSPLSWLLIILGAILSTIVTAALSRLLKP 111 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--HHHHHTTTT--TH-HHHHHHHHHHH-HBB--TTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccc--cc-cHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3466777889999999998776554322 33 55 44555554 443 3555555556655555555555544443
No 87
>PRK09903 putative transporter YfdV; Provisional
Probab=41.90 E-value=3.4e+02 Score=26.50 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccch-HHHHHHHHHHHHHHHH
Q 015929 320 SAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVA-LPPAMSAVIMNIMGST 376 (398)
Q Consensus 320 lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~a-lp~~i~~l~q~i~~s~ 376 (398)
....++++.++..+...+.++--...+..+|..|-.|++.+ --.++..++-.+.-..
T Consensus 248 ~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl 305 (314)
T PRK09903 248 VGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPL 305 (314)
T ss_pred HHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33446888899999999999999899999999887665433 2233444444444333
No 88
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=41.72 E-value=3.8e+02 Score=26.88 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=74.2
Q ss_pred HHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015929 82 TVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL 161 (398)
Q Consensus 82 ~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l 161 (398)
.+|.++-...|...+...+..++.....+.++++... .-+.+++.... ..+.....+...+.=.++|..++.++.
T Consensus 175 ~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~-s~~~~~~~~~~----~~v~~~v~~~n~lg~~~gy~~ar~~g~ 249 (319)
T COG0385 175 VLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAF-SAAVENGIWSG----LLIFVAVILHNLLGLLLGYFGARLLGF 249 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH-HHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445555555655554444333222334444443332 22222332221 122233333344444668888999999
Q ss_pred ChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929 162 PPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218 (398)
Q Consensus 162 ~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~ 218 (398)
|.+....+.+++.+=-...+..++..+-+| +.++.-.++-...+-++-.++-..+.
T Consensus 250 ~~a~~iti~ie~g~qn~~lg~alA~~f~~~-~~~alP~aif~~~q~~~~a~la~~~~ 305 (319)
T COG0385 250 DKADEITIAIEGGMQNLGLGAALAAAFFGN-PLMALPLAIFSVWQNMSGAVLAGLYA 305 (319)
T ss_pred ChhheeeEEEeeccccHHHHHHHHHhcCCC-chhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888777777776666 55555555555566555555555554
No 89
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=41.15 E-value=4.6e+02 Score=27.72 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHH-HHHHHHHcCCChhHHHHHHHHccCch
Q 015929 145 YTIMPTS-GVIVSKFLGLPPALSVGLILLSCCPG 177 (398)
Q Consensus 145 ~vl~Pll-~~~l~~l~~l~~~~~~gl~l~~~~P~ 177 (398)
|-.+|.+ +|-.++-|+.+|-+...+-.+-+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 4566765 78889999999988777777777774
No 90
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=37.74 E-value=2e+02 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=25.0
Q ss_pred hhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHH
Q 015929 330 QRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGST 376 (398)
Q Consensus 330 ~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~ 376 (398)
|..++-=..+.++.++++.++.. ...+|++++.+|...-+..
T Consensus 31 ~~l~LP~~l~~~~aai~MIf~Gi-----~lMlPAav~ivWR~a~~la 72 (96)
T PF07214_consen 31 DYLSLPAPLSTPTAAIAMIFVGI-----GLMLPAAVNIVWRVAKGLA 72 (96)
T ss_pred ccccCcccccCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 33333333455566655554433 4668999999999776543
No 91
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=35.42 E-value=3.2e+02 Score=24.22 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCc--hHHHHHHHHHHHHHH-HHHH-HHHHHcCCChhHHHHHHHHccCchhhHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRP--LSILFGCAAQYTIMP-TSGV-IVSKFLGLPPALSVGLILLSCCPGGTASN 182 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p--~~l~~~l~~~~vl~P-ll~~-~l~~l~~l~~~~~~gl~l~~~~P~~~~s~ 182 (398)
+..+.+-++++|++--.+=+.. +++.. ..+..+.++ .+.| ++.+ ...+++++|+....|.+ .++.=.+..-.
T Consensus 57 ~~GL~lFl~~vGl~aG~~f~~~-l~~~gg~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tpaL~ 132 (154)
T TIGR01625 57 EFGLMLFLYGVGLSAGPGFFSS-LKDGGGLLRINGGALI--TVVPTLLVAVALIKLLRINYALTAGML-AGATTNTPALD 132 (154)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH-HHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHH-hccccChHHHH
Confidence 5677777778888776655554 42333 233333333 2333 3333 34468899999999984 44433333323
Q ss_pred HHHHHhC
Q 015929 183 VVTLIAR 189 (398)
Q Consensus 183 v~t~~a~ 189 (398)
...+..+
T Consensus 133 aa~~~~~ 139 (154)
T TIGR01625 133 AANDTLR 139 (154)
T ss_pred HHHHHhc
Confidence 3344444
No 92
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=32.02 E-value=2.4e+02 Score=31.82 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcccCChHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHH
Q 015929 108 LSLGLIMLAMGLTLELKDLIS--LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185 (398)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~--~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t 185 (398)
.+-.++++.+|+.+.+.++.. .-...++.+++++++.++.-|..++....+.+.......-+++--.-|-|+.|..+.
T Consensus 299 LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 299 LLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 344555666788888877743 100124666777777888898888865555554445777888888888888887666
Q ss_pred HHhCCC
Q 015929 186 LIARGD 191 (398)
Q Consensus 186 ~~a~Gd 191 (398)
.++.+.
T Consensus 379 ~~A~~~ 384 (810)
T TIGR00844 379 ILSKSQ 384 (810)
T ss_pred HHHHHh
Confidence 666433
No 93
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=31.79 E-value=34 Score=26.01 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=12.7
Q ss_pred ccchHHHHHHHHHHHHH
Q 015929 357 SMVALPPAMSAVIMNIM 373 (398)
Q Consensus 357 p~~alp~~i~~l~q~i~ 373 (398)
...-+..++|.++|+..
T Consensus 35 eWfyiati~YtvlQig~ 51 (66)
T PF10746_consen 35 EWFYIATIAYTVLQIGY 51 (66)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667778999999664
No 94
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=30.86 E-value=2.8e+02 Score=24.89 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHH---HHHHHHHHHHHhHHHH
Q 015929 138 LFGCAAQYTIMPTSGVI--VSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSI---VMTMCTTLGAVLFTPL 212 (398)
Q Consensus 138 ~~~l~~~~vl~Pll~~~--l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~---~l~~lstlla~~~~Pl 212 (398)
..|+++ ....|..... .....+.|.+++.++..+...=.-...+.+.....|+..-.- ....+..++..+.+|+
T Consensus 60 ~~Gl~l-~~~~P~~~~s~~~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl 138 (187)
T PF01758_consen 60 ALGLLL-VAACPGGPASNVFTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPL 138 (187)
T ss_dssp HHHHHH-HHHS-B-THHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HhcCCcHHHHHHHHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHH
Confidence 344443 4456665444 334457777888888887775555566666665544433322 4455666777788999
Q ss_pred HHHHHhCcccc
Q 015929 213 LTKILAGTYVP 223 (398)
Q Consensus 213 ~l~ll~g~~v~ 223 (398)
.+..+...+.+
T Consensus 139 ~lG~l~r~~~p 149 (187)
T PF01758_consen 139 LLGMLLRKYLP 149 (187)
T ss_dssp HHHHHHHHHHG
T ss_pred hHHHHHHHHhh
Confidence 99888765544
No 95
>PRK11677 hypothetical protein; Provisional
Probab=27.89 E-value=86 Score=27.29 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 015929 308 LLHFAGFFVGYLSAAICGFK 327 (398)
Q Consensus 308 ll~~~~f~~G~~lar~~gl~ 327 (398)
+-.++|.++||+++|...-.
T Consensus 8 i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHhhccch
Confidence 34568888999999875444
No 96
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=27.66 E-value=6.4e+02 Score=25.35 Aligned_cols=105 Identities=12% Similarity=-0.009 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHH--HHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH--
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT--IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-- 182 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v--l~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-- 182 (398)
+..++.|.+.|-++++.+++.+.- +|.+.+-+.+.+. +--.++|.+.+-+.. +.+.++-.+.+.= +|.+.|
T Consensus 63 n~llpamI~lmLlqcd~Rki~Klg---~rll~ifli~sv~~vlGfIl~yp~~ksf~g-d~Wka~gmi~gSy-tGGSaNmA 137 (384)
T COG5505 63 NYLLPAMIPLMLLQCDVRKIFKLG---RRLLFIFLISSVGTVLGFILAYPLLKSFIG-DLWKAGGMISGSY-TGGSANMA 137 (384)
T ss_pred HHHHHHHHHHHHHHccHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHhhhhheeeee-eCCcchHH
Confidence 678888888999999887777642 3433333332222 111223333333322 3344444444433 444444
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 015929 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKI 216 (398)
Q Consensus 183 v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~l 216 (398)
.+.....-+.++-....+..|+.--+..|+.+.+
T Consensus 138 AmqaaLeVP~~~fsatlaaDtv~ySll~~lli~i 171 (384)
T COG5505 138 AMQAALEVPGEYFSATLAADTVMYSLLFFLLISI 171 (384)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666677777766666666554
No 97
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.29 E-value=2.6e+02 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015929 302 IILSVLLLHFAGFFVGYLSAAIC 324 (398)
Q Consensus 302 i~l~~~ll~~~~f~~G~~lar~~ 324 (398)
..+.+-+++++.+.+|++++..+
T Consensus 70 aa~l~Y~lPll~li~g~~l~~~~ 92 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVLGSYL 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566788888887777543
No 98
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=27.06 E-value=7e+02 Score=25.61 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCCchHHHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015929 59 VTEAKPRWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF 130 (398)
Q Consensus 59 ~~~~~~~~~~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~ 130 (398)
+++.++.++...+.+ .-..|+.++.++..|..-|....... ...++.+.++. .-+++++|+.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~iil~~i~~g~~t~teaa~~~------~~~~l~i~~~~-~~~~~~~~l~~~l 268 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVIILGGIYLGIFTPTEAAAVA------VVYALVIGLFV-YRRLSWKDLWRAL 268 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHHHHHHhhhcccchhhhhhhh------HHHHHHHHHhh-hcccChhhhhHHH
Confidence 334444444444443 33455555555555554443221111 11122222222 4677788887776
No 99
>PRK05326 potassium/proton antiporter; Reviewed
Probab=26.29 E-value=5e+02 Score=27.76 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHH
Q 015929 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTL 186 (398)
Q Consensus 107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~ 186 (398)
.....++++..|+.+++.++.+.. +..+.+.+++-++.=|+..+...+.++.+. ....++--+.|=|..+.+++.
T Consensus 277 ~l~~~~~Fv~lGl~~~~~~l~~~~---~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~--~e~~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 277 WLAQIGMFLVLGLLVTPSRLLDIA---LPALLLALFLILVARPLAVFLSLLPFRFNL--REKLFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccCCCCH--hhhheeeeecchhHHHHHHHH
Confidence 345566677789999888887543 233333444445556776666555555433 223333222344444444433
Q ss_pred H---hCC---Ch--hhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929 187 I---ARG---DV--PLSIVMTMCTTLGAVLFTPLLTKIL 217 (398)
Q Consensus 187 ~---a~G---d~--~la~~l~~lstlla~~~~Pl~l~ll 217 (398)
. ++- +. ..+..++.+|++++..++|.....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 352 FPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 2 221 11 3344556788888888888777666
No 100
>COG2855 Predicted membrane protein [Function unknown]
Probab=26.08 E-value=3.7e+02 Score=27.09 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 015929 106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS 156 (398)
Q Consensus 106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~ 156 (398)
.+.++...|..+|++.+.+++++. ..|.+..+... ++..-..++++.
T Consensus 284 st~ll~~aMaAlGL~t~i~~l~~~---G~kpl~la~~~-~~~l~~~~l~l~ 330 (334)
T COG2855 284 STFLLAMAMAALGLTTHIKALKKA---GGKPLLLALLL-WVFLVVGGLALN 330 (334)
T ss_pred HHHHHHHHHHHhccccCHHHHHHc---CccHHHHHHHH-HHHHHHHHHHHH
Confidence 367889999999999999999975 45666555554 444444555443
No 101
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=25.70 E-value=7.3e+02 Score=25.37 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcc
Q 015929 357 SMVALPPAMSAVIMNIMGSTLGFFWRYI 384 (398)
Q Consensus 357 p~~alp~~i~~l~q~i~~s~la~~~~~~ 384 (398)
|....|.++.=+..=+.+-.++.+..++
T Consensus 331 p~mI~p~iigKL~~Gi~Ai~~A~~~~~~ 358 (372)
T PRK15086 331 PTMIFPMIVGKLIGGITAIGVAILLSVK 358 (372)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777888887777777766666666544
No 102
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=25.37 E-value=7.4e+02 Score=25.29 Aligned_cols=78 Identities=28% Similarity=0.382 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHH
Q 015929 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLI 187 (398)
Q Consensus 108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~ 187 (398)
..+++-+...|+++|.+.+.+.. .........-.+..=...+..++.++.+...+.+.-..... .+..+.+....
T Consensus 277 ~fiplFFi~vG~~~dl~~l~~~~----~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~-~ge~~~v~~~~ 351 (397)
T COG0475 277 LFIPLFFISVGMSLDLGVLLENL----LLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQ-GGEFAFVLAGI 351 (397)
T ss_pred HHHHHHHHHhhHHcCHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhh-hhHHHHHHHHh
Confidence 78888888999999888887642 22222222223333344666777777655444444333332 34555566666
Q ss_pred hCC
Q 015929 188 ARG 190 (398)
Q Consensus 188 a~G 190 (398)
..|
T Consensus 352 ~~~ 354 (397)
T COG0475 352 ALG 354 (397)
T ss_pred ccc
Confidence 666
No 103
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=24.96 E-value=1.5e+02 Score=29.89 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCC--ccchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 015929 312 AGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS--SMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 389 (398)
Q Consensus 312 ~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~--p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~ 389 (398)
.|-+..+..+..+|++.+|+.++++- |--+...++.++...-|| ...++.+=-|.-.--++-..+.+..-.++.|+-
T Consensus 103 ~Gif~t~~~A~~lGf~~~eAAsIgII-GgADGPtsIf~s~~LAp~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I 181 (360)
T PF03977_consen 103 FGIFATFLGAILLGFTPKEAASIGII-GGADGPTSIFVSSKLAPHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKI 181 (360)
T ss_pred HhHHHHHHHHHHhCCCHHHhhHhhhc-ccCCCcHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhc
Q ss_pred C-CCCCccCC
Q 015929 390 K-TSPKTVDK 398 (398)
Q Consensus 390 ~-~~~~~~~~ 398 (398)
+ +++|.++|
T Consensus 182 ~M~~~r~Vsk 191 (360)
T PF03977_consen 182 RMKQLRPVSK 191 (360)
T ss_pred cCCCCCCCCh
No 104
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=24.82 E-value=4.4e+02 Score=28.25 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 015929 361 LPPAMSAVIMNIMGSTLGFFWRYIDPSD 388 (398)
Q Consensus 361 lp~~i~~l~q~i~~s~la~~~~~~~~~~ 388 (398)
+|.++.+++-......+.+.|+.++..|
T Consensus 234 l~~i~g~l~~l~~~~~~~r~~~pk~~~~ 261 (522)
T PF02652_consen 234 LPGILGGLVGLAVLVLFLRFWKPKNIWR 261 (522)
T ss_pred cchHHHHHHHHHHHHHHHHHHccccccc
Confidence 5667777777777777788886544333
No 105
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.66 E-value=3.7e+02 Score=21.61 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=31.4
Q ss_pred CCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccC
Q 015929 325 GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID 385 (398)
Q Consensus 325 gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~ 385 (398)
|.+..|| .++..+-.-+....+.+-...++++...=-..+|.++-.+-.-.++++..|++
T Consensus 29 GPt~~DR-vvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~~~~ 88 (91)
T PRK12599 29 GPTLPDR-VVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLVGRG 88 (91)
T ss_pred CccHhHH-HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5556665 45555444444444555555565554333335565665555555666664433
No 106
>PF15102 TMEM154: TMEM154 protein family
Probab=24.66 E-value=54 Score=28.94 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 015929 358 MVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 389 (398)
Q Consensus 358 ~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~ 389 (398)
.+.+|.++..++-. +..+++.++||++.+++
T Consensus 60 mIlIP~VLLvlLLl-~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 60 MILIPLVLLVLLLL-SVVCLVIYYKRKRTKQE 90 (146)
T ss_pred EEeHHHHHHHHHHH-HHHHheeEEeecccCCC
Confidence 47788665543332 23444445555555444
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.35 E-value=1.5e+02 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhh-----C----CCcchhHHHhhhhhcc
Q 015929 310 HFAGFFVGYLSAAIC-----G----FKEPQRRAISIEVGMQ 341 (398)
Q Consensus 310 ~~~~f~~G~~lar~~-----g----l~~~~~~al~~~~g~r 341 (398)
.++|.++||+++|.. + .+++.-|++....|.+
T Consensus 7 li~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~k 47 (64)
T PF03672_consen 7 LIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRK 47 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence 457778888888752 2 3335567777776655
No 108
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=22.89 E-value=6.6e+02 Score=24.91 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcC-CccchHHHH
Q 015929 300 GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPA 364 (398)
Q Consensus 300 ~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~-~p~~alp~~ 364 (398)
+.++++.+++.+..+ |.+.+..|-..+.|.++.+....|-.-.|..++..+.+ .|...+..+
T Consensus 139 gAaila~iviP~~~~---y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~l~sePf~~LT~i 201 (299)
T PF05884_consen 139 GAAILAYIVIPLIAY---YYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLYLSSEPFIALTPI 201 (299)
T ss_pred hHHHHHHHHHHHHHH---hhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcHHHHHHH
Confidence 445555555565544 34444345555556667777778888888887776665 354444433
No 109
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=22.63 E-value=8.3e+02 Score=24.90 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 015929 83 VGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLP 162 (398)
Q Consensus 83 ~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~ 162 (398)
....+...+|...+.... ........+-+.+-.+|.+.+.+++.+ .|..++.+ ++...+.=++.++++++|+.|
T Consensus 247 tt~~l~~~~~~~~~~l~g-~~~lg~~lly~ffa~IGa~a~i~~l~~----ap~~~l~~-~i~l~iH~~l~l~~~kl~k~~ 320 (378)
T PF05684_consen 247 TTLGLATSFPPFRKLLRG-ASELGTFLLYLFFAVIGASADISELLD----APSLFLFG-FIILAIHLLLMLILGKLFKID 320 (378)
T ss_pred HHHHHHHhccchhhcCCc-hHHHHHHHHHHHHHHHccccCHHHHHH----hHHHHHHH-HHHHHHHHHHHHHHHHHHCCC
Confidence 333455556765554311 111234444444456899887777654 35544433 344666767788899999886
Q ss_pred hhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHH
Q 015929 163 PALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTL 204 (398)
Q Consensus 163 ~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstl 204 (398)
-+. ..+--.++.=+.+.+.+++.-.| .++....+.+.++
T Consensus 321 l~~-~~vAS~AnIGGpaTA~a~A~a~~--~~Lv~pgvL~gvl 359 (378)
T PF05684_consen 321 LFE-LLVASNANIGGPATAPAVAAAKG--PSLVPPGVLMGVL 359 (378)
T ss_pred HHH-HHHHhhcccCCcchHHHHHHhcC--CccHHHHHHHHHH
Confidence 543 23333344433334446666444 5555554444433
No 110
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=22.43 E-value=4.1e+02 Score=21.28 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=32.7
Q ss_pred HHhh-CCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccC
Q 015929 321 AAIC-GFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID 385 (398)
Q Consensus 321 ar~~-gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~ 385 (398)
.|.. |.+..| |.++..+-.-|....+.+-...++++...=-..++.++-.+..-.++++..|++
T Consensus 22 ~R~v~GPt~~D-RvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~g~ 86 (89)
T PRK06161 22 WRLLRGPRAQD-RILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLRGE 86 (89)
T ss_pred HHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3544 555556 556666554455444445555565554333335565664444445566654443
No 111
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=21.36 E-value=5.3e+02 Score=25.03 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhh-----CCCcchhHHHhhhh
Q 015929 311 FAGFFVGYLSAAIC-----GFKEPQRRAISIEV 338 (398)
Q Consensus 311 ~~~f~~G~~lar~~-----gl~~~~~~al~~~~ 338 (398)
.+.|.=||.+-+.+ +++.-||.++++..
T Consensus 33 ~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~gl 65 (287)
T PF07760_consen 33 FVLFLPGYALVAALFPRKHDLDGIERLALSVGL 65 (287)
T ss_pred HHHHhccHHHHHHHccCcCCCcHHHHHHHHHHH
Confidence 34455677776655 45666777777654
No 112
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.11 E-value=1.2e+02 Score=25.94 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcch
Q 015929 309 LHFAGFFVGYLSAAICGFKEPQ 330 (398)
Q Consensus 309 l~~~~f~~G~~lar~~gl~~~~ 330 (398)
-.++|+++||+++|++..+.++
T Consensus 5 ~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred HHHHHHHHHHHHHHHhccchhh
Confidence 3567888999999876555443
No 113
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.48 E-value=6.3e+02 Score=22.68 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhCCCcchhHHHhhhhhcchhHHHHHHHHHh
Q 015929 301 VIILSVLLLHFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNSSLGVVLATAH 353 (398)
Q Consensus 301 ~i~l~~~ll~~~~f~~G~~lar-~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~ 353 (398)
...+..++.+.+...+.+.++| .+|+|+. .+...-+|.++..-++.-|...
T Consensus 85 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~--~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 85 KLLLLGVIITLVPLLIALVIGRYLFKLNPG--IAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHccccCcHHHHHHHHh
Confidence 4555666778888889999998 8888754 3555555666665666666554
Done!