Query 015929
Match_columns 398
No_of_seqs 222 out of 1687
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 7E-49 2.4E-53 388.3 34.1 304 64-396 7-324 (332)
2 2jwa_A Receptor tyrosine-prote 36.4 52 0.0018 22.1 4.2 18 371-388 25-42 (44)
3 3zux_A Transporter, ASBTNM; tr 35.0 2.9E+02 0.01 26.0 17.0 88 81-173 179-266 (332)
4 2l2t_A Receptor tyrosine-prote 32.2 59 0.002 21.8 3.9 10 378-387 31-40 (44)
5 2ks1_B Epidermal growth factor 30.3 92 0.0032 20.8 4.7 13 373-385 27-39 (44)
6 3k3f_A UREA transporter; membr 20.7 3.8E+02 0.013 25.6 8.9 25 309-333 54-78 (340)
7 2oar_A Large-conductance mecha 16.4 1.1E+02 0.0039 26.5 3.7 87 63-157 22-115 (174)
8 4ezc_A UREA transporter 1; mem 14.2 8E+02 0.027 23.8 9.6 40 309-351 90-130 (384)
9 1zcd_A Na(+)/H(+) antiporter 1 12.8 9.1E+02 0.031 23.3 15.9 104 105-212 63-173 (388)
10 1q90_M Cytochrome B6F complex 7.5 5.1E+02 0.017 16.7 4.4 27 297-323 4-30 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=7e-49 Score=388.32 Aligned_cols=304 Identities=33% Similarity=0.545 Sum_probs=268.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929 64 PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA 143 (398)
Q Consensus 64 ~~~~~~l~~l~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~ 143 (398)
+.++|+.+++++++++++++++++|+.+|+.+.+... .+.++++++||.+|++++.+|+++.+ +|||.+..+++.
T Consensus 7 ~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~----~i~~~l~~~mf~~G~~l~~~~l~~~~-~~~~~~~~~l~~ 81 (332)
T 3zux_A 7 NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP----YIPWLLGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIA 81 (332)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGG----GHHHHHHHHHHHHHHHCCGGGGHHHH-HSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHH----HHHHHHHHHHHHHHhCCCHHHHHHHH-hCcHHHHHHHHH
Confidence 3578889999999999999999999999998888764 56789999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccc
Q 015929 144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP 223 (398)
Q Consensus 144 ~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~ 223 (398)
|++++|+++|+++++++++++++.|+++++||||+++|++||+++|||+++++.++.+||+++++++|+++.++.|++++
T Consensus 82 ~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~ 161 (332)
T 3zux_A 82 QFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE 161 (332)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cChHHHHHHH-------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHH
Q 015929 224 VDAVKLSIST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR 290 (398)
Q Consensus 224 vd~~~~~l~l-------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~ 290 (398)
+|++.++.++ +|+++|+..+++++..+.++..+++++++.+++.|.+.+.+
T Consensus 162 v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~---------------- 225 (332)
T 3zux_A 162 IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME---------------- 225 (332)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHh----------------
Confidence 9988776543 28999998899999999999999999988888888665432
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcC-CccchHHHHHHHHH
Q 015929 291 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPAMSAVI 369 (398)
Q Consensus 291 ~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~-~p~~alp~~i~~l~ 369 (398)
....++..+++++.++|.+||+++|++|++++|++|+++|+|+||+++|+++|..+|+ +|.+++|.++|++|
T Consensus 226 -------~~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~ 298 (332)
T 3zux_A 226 -------SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVW 298 (332)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1124556678889999999999999999999999999999999999999999999996 68999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCcc
Q 015929 370 MNIMGSTLGFFWRYIDPSDSKTSPKTV 396 (398)
Q Consensus 370 q~i~~s~la~~~~~~~~~~~~~~~~~~ 396 (398)
|++.+++++.+|+|++++++ +.+||.
T Consensus 299 q~i~~~~la~~~~~~~~~~~-~~~~~~ 324 (332)
T 3zux_A 299 HNISGSLLATYWAAKAGKHK-KPLDRA 324 (332)
T ss_dssp HHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHcCccccC-Cchhhc
Confidence 99999999999998875443 444443
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.42 E-value=52 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhccCCCC
Q 015929 371 NIMGSTLGFFWRYIDPSD 388 (398)
Q Consensus 371 ~i~~s~la~~~~~~~~~~ 388 (398)
.+.+..+..++|||+.++
T Consensus 25 vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHhheehhhhhc
Confidence 333444455566665443
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=34.96 E-value=2.9e+02 Score=25.98 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015929 81 VTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG 160 (398)
Q Consensus 81 i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~ 160 (398)
+++|.++-..+|...++..+..+......+.++.+... .-+.+.+.+. +..+....++...+.-.++|.+++.++
T Consensus 179 ~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~-~~~~~~~~~~----~~~v~~~~~l~~~~~~~lg~~~~r~~~ 253 (332)
T 3zux_A 179 IVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVV-GASKGKIMES----GLLIFAVVVLHNGIGYLLGFFAAKWTG 253 (332)
T ss_dssp HHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHH-HHTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HhhhHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555566765544443212111222222222221 1233444332 233444444455666677888888889
Q ss_pred CChhHHHHHHHHc
Q 015929 161 LPPALSVGLILLS 173 (398)
Q Consensus 161 l~~~~~~gl~l~~ 173 (398)
.+.+....+.+..
T Consensus 254 ~~~~~~~ti~~e~ 266 (332)
T 3zux_A 254 LPYDAQKALTIEV 266 (332)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHhHhhhhhhhh
Confidence 8888777777733
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.21 E-value=59 Score=21.77 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHhccCCC
Q 015929 378 GFFWRYIDPS 387 (398)
Q Consensus 378 a~~~~~~~~~ 387 (398)
..+||||+.+
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3445555433
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=30.25 E-value=92 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=5.8
Q ss_pred HHHHHHHHHhccC
Q 015929 373 MGSTLGFFWRYID 385 (398)
Q Consensus 373 ~~s~la~~~~~~~ 385 (398)
+......+||||+
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 3333344555544
No 6
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=20.69 E-value=3.8e+02 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhHH
Q 015929 309 LHFAGFFVGYLSAAICGFKEPQRRA 333 (398)
Q Consensus 309 l~~~~f~~G~~lar~~gl~~~~~~a 333 (398)
..++|-.++...++++|.|+++.+.
T Consensus 54 ~allG~~~stltA~llg~~~~~i~~ 78 (340)
T 3k3f_A 54 CAVLGTAASTLTAQLLGVDKPLVRA 78 (340)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 3456667788888888988766544
No 7
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=16.44 E-value=1.1e+02 Score=26.50 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHh--cC----chH
Q 015929 63 KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFM--QR----PLS 136 (398)
Q Consensus 63 ~~~~~~~l~~l~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~--~~----p~~ 136 (398)
+.-|+++-+|+.+-.-+=+++|+++|-.+-.....+.+ ..+.+.+. ++ | +.+++++.-.++ .. ...
T Consensus 22 ~~mlkeFKeFi~RGNViDLAVgVIIGaAF~~IVtSlV~---dIImPlIg--l~--G-g~dfs~l~~~l~~~~~~~~i~yG 93 (174)
T 2oar_A 22 KHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTD---SIITPLIN--RI--G-VNAQSDVGILRIGIGGGQTIDLN 93 (174)
T ss_dssp --CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HH--C-CCCEEECCCCTTTCCSCEEECHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHH--hh--C-CCCcccceEEEecCCCceeeeHH
Confidence 44577888888777788888888888776555544432 14556665 22 3 345554421110 00 124
Q ss_pred HHHHHHHHHHHHHHHH-HHHHH
Q 015929 137 ILFGCAAQYTIMPTSG-VIVSK 157 (398)
Q Consensus 137 l~~~l~~~~vl~Pll~-~~l~~ 157 (398)
..+..+++|+++-++. |.+.+
T Consensus 94 ~Fi~avInFlIIA~vIYFliVk 115 (174)
T 2oar_A 94 VLLSAAINFFLIAFAVYFLVVL 115 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888777 44444
No 8
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=14.23 E-value=8e+02 Score=23.76 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHH
Q 015929 309 LHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLAT 351 (398)
Q Consensus 309 l~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~ 351 (398)
..++|-.++.+.++++|.+++|.+.--+ |. |. -.|++++.
T Consensus 90 ~allG~~vstltA~llg~~~~~I~~GLy--Gf-Ng~Lvgial~~ 130 (384)
T 4ezc_A 90 NGCVGTVVSTLTALLLSQDRSAITAGLQ--GY-NATLVGILMAI 130 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHTTT--TH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHcchh--hh-hHHHHHHHHHH
Confidence 4566777888999999988776544222 33 44 44555543
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=12.76 E-value=9.1e+02 Score=23.32 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHcccCChHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHccCchhhHH
Q 015929 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLS--ILFGCAAQYTIMPTSGVIVSKFLGLP-PALSVGLILLSCCPGGTAS 181 (398)
Q Consensus 105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~--l~~~l~~~~vl~Pll~~~l~~l~~l~-~~~~~gl~l~~~~P~~~~s 181 (398)
.-+..+.+.||.+|+.++.|.+...+ +++|. .-....+-=++.|.+.|. .++.+ ++...|-.+..+.-.+-+.
T Consensus 63 indglm~lFff~vGLEik~e~l~G~L-~~~~~a~~p~~aAlgGmivP~~iy~---~~~~~~~~~~~gw~ip~ATdIAfal 138 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELMQGSL-ASLRQAAFPVIAAIGGMIVPALLYL---AFNYADPITREGWAIPAATDIAFAL 138 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTT-SSTTTSHHHHHHHHHHTTTTHHHHG---GGCCSSTTHHHHTSSSSCCCHHHHH
T ss_pred HhhHhHHHHHHHHHHHhhHHHhcchh-hhhhhHHHHHHHHHHHHHHHHHHHH---HHhcCChhhhhhhHHHHHHHHHHHH
Confidence 34678899999999999988773333 22222 112222234567887752 34432 3233333333332233333
Q ss_pred HHHHHHhCCCh----hhHHHHHHHHHHHHHhHHHH
Q 015929 182 NVVTLIARGDV----PLSIVMTMCTTLGAVLFTPL 212 (398)
Q Consensus 182 ~v~t~~a~Gd~----~la~~l~~lstlla~~~~Pl 212 (398)
.++..+.+... ........+.-+.+++.+-+
T Consensus 139 ~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAv 173 (388)
T 1zcd_A 139 GVLALLGSRVPLALKIFLMALAIIDDLGAIIIIAL 173 (388)
T ss_dssp HHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 34555566677777766544
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=7.53 E-value=5.1e+02 Score=16.75 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015929 297 GELGVIILSVLLLHFAGFFVGYLSAAI 323 (398)
Q Consensus 297 ~~~~~i~l~~~ll~~~~f~~G~~lar~ 323 (398)
+....+...++.+.++|.++|+.+-|.
T Consensus 4 ~EIf~~A~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 4 EFIAGTALTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!