Query 015929
Match_columns 398
No_of_seqs 222 out of 1687
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015929.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015929hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut3a_ g.9.1.1 (A:) Beta-defe 5.0 84 0.0061 18.0 0.4 18 34-51 12-29 (38)
2 d1otsa_ f.20.1.1 (A:) Clc chlo 4.7 3.6E+02 0.026 23.9 5.1 39 335-373 380-419 (444)
3 d1oedb_ f.36.1.1 (B:) Acetylch 4.4 1.8E+02 0.013 23.4 2.3 20 63-82 209-228 (250)
4 d2crna1 a.5.2.1 (A:8-58) Suppr 4.0 4.4E+02 0.032 16.0 3.5 34 324-357 12-45 (51)
5 d1q90b_ f.21.1.2 (B:) Cytochro 3.2 1E+03 0.074 18.7 7.5 66 111-177 88-157 (212)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 3.0 7.4E+02 0.054 16.7 4.5 14 374-387 45-58 (100)
7 d1oedc_ f.36.1.1 (C:) Acetylch 2.7 2E+02 0.015 23.1 0.9 18 63-80 219-236 (260)
8 d1oeda_ f.36.1.1 (A:) Acetylch 2.6 2.7E+02 0.02 22.0 1.6 20 63-82 186-205 (227)
9 d1oede_ f.36.1.1 (E:) Acetylch 2.5 2.9E+02 0.021 22.1 1.8 19 61-79 217-235 (260)
10 d1whca_ a.5.2.1 (A:) UBA/UBX 3 2.3 7.9E+02 0.058 15.4 3.7 33 324-356 19-51 (64)
No 1
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=5.00 E-value=84 Score=18.04 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=12.7
Q ss_pred ccCCCCCCCCcccccccc
Q 015929 34 ISSSPPSFKNLQITRCVN 51 (398)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (398)
|+.+--.|..+|+++|..
T Consensus 12 cargrcrfpsipigrcsr 29 (38)
T d1ut3a_ 12 CARGRCRFPSIPIGRCSR 29 (38)
T ss_dssp EESSSCCTTEEEEEESSS
T ss_pred cccccccCCCcchhHHHH
Confidence 455555677889998864
No 2
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=4.72 E-value=3.6e+02 Score=23.85 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=22.2
Q ss_pred hhhhhcchhHHHHH-HHHHhcCCccchHHHHHHHHHHHHH
Q 015929 335 SIEVGMQNSSLGVV-LATAHFTSSMVALPPAMSAVIMNIM 373 (398)
Q Consensus 335 ~~~~g~rN~~Lai~-lA~~~f~~p~~alp~~i~~l~q~i~ 373 (398)
++-+|.-|.+++.. +.....++....+|.++..+.-..+
T Consensus 380 a~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v 419 (444)
T d1otsa_ 380 ALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLL 419 (444)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 44456666655544 4455555667777776665544444
No 3
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.41 E-value=1.8e+02 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q 015929 63 KPRWEYLLSTAASLYPLYVT 82 (398)
Q Consensus 63 ~~~~~~~l~~l~~~~p~~i~ 82 (398)
+.+|+.+...+||.+.+...
T Consensus 209 ~~EW~~vA~VlDRlfl~lF~ 228 (250)
T d1oedb_ 209 KKDWQYVAMVADRLFLYVFF 228 (250)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45798888888886654433
No 4
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.98 E-value=4.4e+02 Score=16.02 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=22.5
Q ss_pred hCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc
Q 015929 324 CGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS 357 (398)
Q Consensus 324 ~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p 357 (398)
+|++++.++-..+.+|.+|.--|+--...+..+|
T Consensus 12 MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~d~ 45 (51)
T d2crna1 12 MGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 45 (51)
T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred cCCCHHHHHHHHHHHCCCCHHHHHHHHHHcCCCc
Confidence 5888877666667778788766665555555443
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.17 E-value=1e+03 Score=18.70 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHHHHccCch
Q 015929 111 GLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA----LSVGLILLSCCPG 177 (398)
Q Consensus 111 ~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~----~~~gl~l~~~~P~ 177 (398)
-++++.+.+.+-..-+.... |+||...+...+...++=+..-..+.+++-|.. ...+.=+..+.|.
T Consensus 88 s~~~~~~~lHm~r~~~~gsy-k~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~iP~ 157 (212)
T d1q90b_ 88 SMMVLMMVLHVFRVYLTGGF-KRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPG 157 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGSTT
T ss_pred hHHHHHHHHHHHHHHHcCcc-cCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhh
Confidence 33444444444333344444 667665444333333332333335666666553 2334444556664
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.99 E-value=7.4e+02 Score=16.71 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=6.4
Q ss_pred HHHHHHHHhccCCC
Q 015929 374 GSTLGFFWRYIDPS 387 (398)
Q Consensus 374 ~s~la~~~~~~~~~ 387 (398)
+......||.|.++
T Consensus 45 ~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 45 LLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHBTTT
T ss_pred HHHHHHhhhhhccC
Confidence 33334455555443
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.66 E-value=2e+02 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHhhHHHHH
Q 015929 63 KPRWEYLLSTAASLYPLY 80 (398)
Q Consensus 63 ~~~~~~~l~~l~~~~p~~ 80 (398)
..+|+.+...+||.+.+.
T Consensus 219 ~~EWk~vA~ViDRlfl~l 236 (260)
T d1oedc_ 219 VGNWNLVGQTIDRLSMFI 236 (260)
T ss_dssp -------CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356877777777765443
No 8
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.55 E-value=2.7e+02 Score=21.98 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q 015929 63 KPRWEYLLSTAASLYPLYVT 82 (398)
Q Consensus 63 ~~~~~~~l~~l~~~~p~~i~ 82 (398)
+.+|+++.+.+||.+.+...
T Consensus 186 ~~eW~~vA~viDRi~~~~F~ 205 (227)
T d1oeda_ 186 AEEWKYVAMVIDHILLCVFM 205 (227)
T ss_dssp -------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688777777775444433
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.53 E-value=2.9e+02 Score=22.12 Aligned_cols=19 Identities=5% Similarity=0.080 Sum_probs=6.0
Q ss_pred CchHHHHHHHHHHhhHHHH
Q 015929 61 EAKPRWEYLLSTAASLYPL 79 (398)
Q Consensus 61 ~~~~~~~~~l~~l~~~~p~ 79 (398)
+.+.+|+.+.+.+||.+.+
T Consensus 217 ~~~~eW~~vA~viDR~~l~ 235 (260)
T d1oede_ 217 SENENWVLIGKVIDKACFW 235 (260)
T ss_dssp ---------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346787777777775433
No 10
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.26 E-value=7.9e+02 Score=15.38 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=21.5
Q ss_pred hCCCcchhHHHhhhhhcchhHHHHHHHHHhcCC
Q 015929 324 CGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS 356 (398)
Q Consensus 324 ~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~ 356 (398)
+|++++.++-..+.++.+|.--|+--...+..+
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d 51 (64)
T d1whca_ 19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHHCCCC
Confidence 578887766666666777776666555555543
Done!