BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015932
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 25/379 (6%)

Query: 4   ALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEV 63
           AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ + 
Sbjct: 70  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 129

Query: 64  GKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXX 123
             +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY       
Sbjct: 130 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 189

Query: 124 XXXXXXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEFFHFAI 173
                   +     W+ +  L  Y+  S   A  +V      P   EL +     F    
Sbjct: 190 LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----LFRLGF 245

Query: 174 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSN 233
           P A  +  E   F ++ L+    P      +   V LN    ++  P  +GAAVS RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 234 ELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLV 293
           +LG  + + A +A    +   +    + +      R     +++  + VV     +    
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 294 CLSVIMDSLQGVFSGVARGCGWQNIAAFVNLG--AFYLCGIPTAAILGF--WLK---FRG 346
            +   MD++Q V +G  R  G++++ A  +    ++++ G+PT  ILG   WL       
Sbjct: 364 AIYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGA 421

Query: 347 RGLWIGIQAGAFTQTLLLG 365
           +G W+G   G     L+LG
Sbjct: 422 KGFWLGFIIGLSAAALMLG 440


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/360 (18%), Positives = 130/360 (36%), Gaps = 9/360 (2%)

Query: 3   SALETLCGQAYGAQQYQRIGTQTYTAI-FCLFLVCFPLSFLWIYAGKLLVLIGQDPQISH 61
           +AL  +  Q YGA +    G      I F L L  F +  +W         +     +  
Sbjct: 71  AALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYVEG 130

Query: 62  EVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXX 121
            + ++M++   A+ A    + L  Y  S +    + L S AA  L++P+ +  VY     
Sbjct: 131 TMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGM 190

Query: 122 XXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQG------IGEFFHFAIPS 175
                     +      F A+ +    A  +   P  +    G        + +    P 
Sbjct: 191 PALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKPDWAVFKQIWKIGAPI 250

Query: 176 AVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL 235
            +   LE  +F  ++ +        +    + + L+ I  LY IP  +G+A + R+   L
Sbjct: 251 GLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGI--LYMIPQSVGSAGTVRIGFSL 308

Query: 236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCL 295
           G     +AR      +       ++   +L   R     +++++  V+   +T+     L
Sbjct: 309 GRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLLFAGL 368

Query: 296 SVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQA 355
               D  Q + S   RG     +  F++  AF+ CG+    +L +       G W  + A
Sbjct: 369 FQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIA 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,921
Number of Sequences: 62578
Number of extensions: 371847
Number of successful extensions: 834
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 3
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)