Query 015932
Match_columns 398
No_of_seqs 203 out of 1918
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.6E-53 1E-57 399.2 42.9 376 1-379 72-451 (455)
2 PRK10189 MATE family multidrug 100.0 1.4E-48 3E-53 372.1 44.1 374 1-376 84-467 (478)
3 PRK00187 multidrug efflux prot 100.0 4.2E-48 9.2E-53 368.7 43.9 367 2-370 66-443 (464)
4 PRK01766 multidrug efflux prot 100.0 3.4E-46 7.3E-51 356.7 44.2 372 2-375 68-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 2.1E-46 4.5E-51 356.6 42.2 365 2-370 69-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 9E-46 1.9E-50 349.7 41.5 364 2-375 66-434 (441)
7 TIGR01695 mviN integral membra 100.0 9.7E-34 2.1E-38 274.8 43.0 356 6-371 61-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 5E-33 1.1E-37 268.9 39.2 361 2-371 57-434 (488)
9 KOG1347 Uncharacterized membra 100.0 2.9E-34 6.3E-39 269.2 27.5 388 1-390 84-471 (473)
10 TIGR00797 matE putative efflux 100.0 1.1E-32 2.4E-37 254.3 34.1 290 2-293 49-341 (342)
11 PRK15099 O-antigen translocase 100.0 2.9E-31 6.4E-36 250.8 37.1 349 2-369 59-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 6.8E-30 1.5E-34 241.9 44.2 358 3-371 35-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.6E-26 3.5E-31 215.3 42.7 363 1-371 66-437 (518)
14 COG0534 NorM Na+-driven multid 99.9 7.2E-25 1.6E-29 207.5 25.9 209 162-373 13-223 (455)
15 PRK10367 DNA-damage-inducible 99.9 2.3E-24 5E-29 204.0 26.9 206 163-370 6-211 (441)
16 PRK00187 multidrug efflux prot 99.9 6.3E-24 1.4E-28 202.8 26.5 205 162-370 6-214 (464)
17 PRK10459 colanic acid exporter 99.9 6.6E-22 1.4E-26 191.3 38.8 328 23-370 75-404 (492)
18 PRK10189 MATE family multidrug 99.9 1.3E-23 2.9E-28 200.7 26.1 205 163-370 26-236 (478)
19 PRK09575 vmrA multidrug efflux 99.9 8.6E-24 1.9E-28 201.5 22.0 206 163-371 9-215 (453)
20 PRK01766 multidrug efflux prot 99.9 4.5E-23 9.8E-28 197.4 26.0 209 161-372 7-219 (456)
21 COG2244 RfbX Membrane protein 99.9 9.4E-20 2E-24 175.9 35.4 277 65-354 118-395 (480)
22 TIGR00797 matE putative efflux 99.8 3.8E-18 8.3E-23 157.4 26.0 194 174-370 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 1.8E-20 3.9E-25 153.5 8.7 162 174-337 1-162 (162)
24 KOG1347 Uncharacterized membra 99.5 6.2E-13 1.3E-17 125.6 20.0 206 162-371 24-230 (473)
25 TIGR02900 spore_V_B stage V sp 99.5 7.3E-13 1.6E-17 128.3 19.1 196 169-371 2-204 (488)
26 PF01943 Polysacc_synt: Polysa 99.4 1.8E-10 3.9E-15 102.5 23.9 217 3-234 54-272 (273)
27 TIGR01695 mviN integral membra 99.4 9.5E-11 2.1E-15 114.0 23.8 195 170-371 4-207 (502)
28 PRK15099 O-antigen translocase 99.3 1.2E-10 2.6E-15 110.3 18.4 171 189-370 25-196 (416)
29 PF03023 MVIN: MviN-like prote 99.3 4.1E-10 8.8E-15 107.3 20.7 145 2-148 255-404 (451)
30 PF01554 MatE: MatE; InterPro 99.3 1E-12 2.2E-17 107.4 2.5 112 2-113 49-162 (162)
31 COG0728 MviN Uncharacterized m 99.3 3.6E-09 7.7E-14 99.8 24.5 146 2-149 289-439 (518)
32 PF13440 Polysacc_synt_3: Poly 99.2 2.4E-08 5.3E-13 87.7 25.0 209 4-233 40-250 (251)
33 PRK10459 colanic acid exporter 98.9 2.1E-06 4.5E-11 83.4 26.3 136 5-146 268-404 (492)
34 PF04506 Rft-1: Rft protein; 98.8 2.8E-06 6.1E-11 81.9 23.7 202 166-370 253-469 (549)
35 KOG2864 Nuclear division RFT1 98.6 3.9E-05 8.5E-10 69.8 23.9 199 166-369 239-447 (530)
36 COG2244 RfbX Membrane protein 98.5 5.6E-06 1.2E-10 80.1 18.1 126 2-132 270-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.4 3.1E-06 6.8E-11 67.6 9.9 80 289-371 1-80 (146)
38 PF14667 Polysacc_synt_C: Poly 98.3 2.3E-05 5E-10 62.5 13.3 79 67-147 2-80 (146)
39 PF01943 Polysacc_synt: Polysa 98.2 0.00042 9E-09 61.4 20.5 167 189-370 23-190 (273)
40 PF13440 Polysacc_synt_3: Poly 98.0 0.0015 3.2E-08 57.1 20.2 163 189-369 8-171 (251)
41 PF07260 ANKH: Progressive ank 98.0 0.0053 1.1E-07 53.9 22.3 169 163-339 8-180 (345)
42 PF07260 ANKH: Progressive ank 97.9 0.009 1.9E-07 52.5 21.0 149 51-199 116-269 (345)
43 PF04506 Rft-1: Rft protein; 97.4 0.0051 1.1E-07 59.8 14.6 128 19-147 339-470 (549)
44 COG4267 Predicted membrane pro 97.2 0.17 3.7E-06 45.7 23.8 257 84-356 151-431 (467)
45 KOG2864 Nuclear division RFT1 97.0 0.0083 1.8E-07 55.2 10.7 137 9-147 306-449 (530)
46 PF14184 YrvL: Regulatory prot 83.9 18 0.00039 28.0 12.7 105 24-130 3-108 (132)
47 COG4267 Predicted membrane pro 83.5 37 0.0008 31.4 20.2 134 219-369 76-209 (467)
48 PF03904 DUF334: Domain of unk 73.1 15 0.00033 30.9 6.5 70 17-86 142-220 (230)
49 PF04505 Dispanin: Interferon- 67.2 40 0.00088 23.6 7.1 40 221-260 34-73 (82)
50 COG0798 ACR3 Arsenite efflux p 58.5 51 0.0011 29.9 7.4 150 5-159 190-341 (342)
51 PF05975 EcsB: Bacterial ABC t 49.0 2.3E+02 0.005 26.6 15.4 37 238-274 88-124 (386)
52 KOG2468 Dolichol kinase [Lipid 30.2 5E+02 0.011 24.9 9.3 82 172-262 379-460 (510)
53 TIGR00383 corA magnesium Mg(2+ 30.1 1.4E+02 0.0031 26.9 6.0 56 316-373 255-317 (318)
54 PF06808 DctM: DctM-like trans 29.5 5E+02 0.011 24.7 12.8 29 235-263 256-284 (416)
55 PTZ00370 STEVOR; Provisional 28.2 1.1E+02 0.0023 27.2 4.4 33 346-378 256-291 (296)
56 PRK09546 zntB zinc transporter 28.1 1.8E+02 0.0038 26.5 6.2 51 321-373 266-323 (324)
57 PRK10739 putative antibiotic t 27.9 3.6E+02 0.0079 22.5 8.1 56 229-288 22-77 (197)
58 PF13347 MFS_2: MFS/sugar tran 25.9 5.6E+02 0.012 24.1 15.2 20 307-326 281-300 (428)
59 PF01102 Glycophorin_A: Glycop 22.5 1.1E+02 0.0024 23.3 3.1 25 347-371 67-91 (122)
60 COG0598 CorA Mg2+ and Co2+ tra 21.5 2.3E+02 0.005 25.8 5.6 54 317-373 260-321 (322)
61 PRK11085 magnesium/nickel/coba 21.3 3.2E+02 0.0068 24.9 6.4 18 356-373 298-315 (316)
62 PRK01637 hypothetical protein; 21.3 5.9E+02 0.013 22.6 18.1 14 226-239 111-124 (286)
63 PF05975 EcsB: Bacterial ABC t 21.0 7E+02 0.015 23.4 14.9 35 17-51 89-124 (386)
64 PF01102 Glycophorin_A: Glycop 20.6 1.3E+02 0.0028 23.0 3.1 25 123-147 67-91 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.6e-53 Score=399.22 Aligned_cols=376 Identities=22% Similarity=0.324 Sum_probs=354.2
Q ss_pred CcchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHH
Q 015932 1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYAT 79 (398)
Q Consensus 1 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (398)
+++|+++++||++|+||++++++..+++++++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999888887 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccCCC
Q 015932 80 MQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVP 156 (398)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~-~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (398)
+..+++.+|+.|+++.+++.+++.+++|+++|++|+++ ++ +|+.|+++||+++++++.+...++++++++ ......+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999 57 999999999999999999999999988875 2222233
Q ss_pred CChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015932 157 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELG 236 (398)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g 236 (398)
..+++++.+|+++++|+|..+++..+...+.....+.+++|++ ++|+|+++.++.++.++++.|++++.+++++|++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455667889999999999999999999999999999999975 66999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 015932 237 AGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQ 316 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 316 (398)
+||+|++|+..+.+..++..+++..+.+++++++++..+|++|+|+.+.+..++++..+..++++.+.+..+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 015932 317 NIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASK 379 (398)
Q Consensus 317 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 379 (398)
+.++..++++.|.+.+|+.+++.+.. +|..|+|+++..++.+..+...+++++++|++...+
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999665 999999999999999999999999999888876444
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.4e-48 Score=372.14 Aligned_cols=374 Identities=15% Similarity=0.168 Sum_probs=341.2
Q ss_pred CcchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC--CChhHHHHHHHHHHHHHhhHHHH
Q 015932 1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG--QDPQISHEVGKFMIWLLPALFAY 77 (398)
Q Consensus 1 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~--~~~~~~~~~~~y~~~~~~~~~~~ 77 (398)
+++|.++++||++|+||+++++++.++++.++++++++.+++ +.+.++++.+++ .|+|+.+.+.+|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999987 788999999884 79999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhccc----ccccchhHHHHHHHHHHHHHHHHHHHHhccc--cc
Q 015932 78 ATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS----GLGNLGGALAIGISNWLNVTFLAIYMKFSTA--CA 151 (398)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~--~~ 151 (398)
.+...+++.+|+.|+++.+++.++...++|++++++++++. ++|+.|+++|+.+++++..+...++++++++ .+
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999863 8999999999999999998887666654322 11
Q ss_pred ccCCC-CChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 152 ESRVP-ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTR 230 (398)
Q Consensus 152 ~~~~~-~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~ 230 (398)
.++.+ +++.+++.+|+++++|+|..++.............+.+.+|+. ++|+++++.++.++..++..|++++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~~l 321 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIAFSIAALINLPGNALGSASTII 321 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1223557789999999999999888887777777778888875 66999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 231 VSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVA 310 (398)
Q Consensus 231 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 310 (398)
++|++|++|+|++|+..+.+.++++.++++.+++++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.+
T Consensus 322 vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 322 TGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHHH
Q 015932 311 RGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 376 (398)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 376 (398)
||.||++.+++.++++.|++.+|+.|++.+..++|+.|+|++..+++.+..++..+++++++|++.
T Consensus 402 rg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 402 KGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999999999999999999999999987778999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.2e-48 Score=368.74 Aligned_cols=367 Identities=21% Similarity=0.299 Sum_probs=333.5
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQ 81 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (398)
++|.++++||++|++|+++++++.++++.+.++++++..++..+.+|++.+++.|+|+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999988877557899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhccc----ccccchhHHHHHHHHHHHHHHHHHHHHhccccccc--CC
Q 015932 82 PLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS----GLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RV 155 (398)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (398)
.+++++|+.|+++++++.+++..++|+++|++|+++. ++|+.|+++||.+++....+.+.++++++++.++. +.
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999863 69999999999999998887776666654432111 11
Q ss_pred CCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 156 PISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL 235 (398)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~ 235 (398)
+..+++++..|++++.++|.++++..+......+..+++++|++ ++|++++++++..+...+..|++++..++++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233456789999999999999999999999999999999975 6699999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccC--cH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN--EK---QVVDYVTTMAPLVCLSVIMDSLQGVFSGVA 310 (398)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 310 (398)
|+||+|++++..+.+..+++.++++.+++.+++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 44 688999999999999999999999999999
Q ss_pred hhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 311 RGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
||.||++.+++.++++.|++++|+.|++.+.+++|+.|+|+++.+++.+..+.....+++
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888999999999999999998877666643
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.4e-46 Score=356.74 Aligned_cols=372 Identities=21% Similarity=0.336 Sum_probs=340.7
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++.+||++|++|++++++..++++.+.++.+++.+++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998887 77789999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcc----cccccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccC
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESR 154 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~----~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~--~~~ 154 (398)
..+++++|+.|+++++++.+++..++|++++++++++ +++|+.|+++||.+++++..+...++.+++++.+ +.+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999975 4689999999999999999999888877654321 111
Q ss_pred CCCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 155 VPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNE 234 (398)
Q Consensus 155 ~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~ 234 (398)
.++.+++++..|+++++++|.+++...+...+..+..+.+++|+. ++|+++++.++.++...+..|++.+.++.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233456789999999999999999988888898899999875 569999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015932 235 LGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCG 314 (398)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 314 (398)
+|+||++++|+..+.+.++++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++.+..+++||.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHH
Q 015932 315 WQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 375 (398)
Q Consensus 315 ~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 375 (398)
|++.++..++++.|++++|..+++.+.+++|+.|+|+++.+++.+..++..+++++.+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888899999999999999999998888877765443
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.1e-46 Score=356.60 Aligned_cols=365 Identities=12% Similarity=0.089 Sum_probs=330.8
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++++||++|+||+|++++.+++++.++++++++.+++ ..+.+|++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999987 88899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISME 160 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
....+.+|+.|+.+.+...++...++|+++|++|++++++|+.|+++||.+++++..++.+++++++++..+.+.+..+.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999988999999999999999999998877776554322211111233
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~ 240 (398)
+++..|+++++|.|..++.............+.+++|+++ ++|+++++.++..+...+..|++++..|.+||++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~-~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSAL-TVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 4567899999999999999988888888788888888643 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchh
Q 015932 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN-EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIA 319 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (398)
|++|+..+.+.++++..+++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.+++++..+..+.+||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999999999999999999995 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 320 AFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 320 ~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
+..+.... ++++|+.+++.. .+|+.|+|+++.+++.+..++..+++++
T Consensus 388 ~~~~~~~~-~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 388 LFISIGNM-LIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHhH-HHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 99998875 789999998873 4799999999999999988887766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=9e-46 Score=349.66 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=316.0
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++++||++|+||+|+++++.++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999887 77899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISME 160 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
..+++.+|+.|+++.+++.+++.+++|+++|++|++++++|+.|+++||.+++++..+...++++++++.++.+.+..++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 99999999999999999999999999999999999998999999999999999999988777766543211111111111
Q ss_pred H-HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015932 161 L-FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGN 239 (398)
Q Consensus 161 ~-~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~ 239 (398)
+ ++.+|++++++.|..+++..+...+.....+++++|++ ++|+|+++.++.++..++..|++++.+++++|++|+||
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 2 24679999999999999999999999989999999975 67999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---cc
Q 015932 240 VQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCG---WQ 316 (398)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~ 316 (398)
+|++|+..+.+.+++...+.+.+++++.+++++..+|++|+|+.+.+..++++.++..+......+..++++|.+ |+
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt 383 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM 383 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999999999999999999999999999999876443324444444455544 59
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHH
Q 015932 317 NIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 375 (398)
Q Consensus 317 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 375 (398)
+.++..+.++.|+..+ .. +++|..|+|++..+++.+..++...+++++ |+|
T Consensus 384 ~~~~~~~~~~~~~~~~-----~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 384 RNSMAVAAAGFALTLL-----TL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHH-----HH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 9999999998764222 22 357999999999999999999988776654 744
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=9.7e-34 Score=274.75 Aligned_cols=356 Identities=12% Similarity=0.070 Sum_probs=300.1
Q ss_pred hhHHHhhhCCCcc-chHHHHHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHh--CCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 6 ETLCGQAYGAQQY-QRIGTQTYTAIFCLFLVCFP-LSFL-WIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 6 ~~~~s~~~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~l--~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+..+++..+++|+ |++++.+.+++....+.+.+ ..++ +.+++++..++ +.|+|..+.+.+|+++..++.|+..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 57777787777766655554 4555 77788888887 567888899999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhH--HHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGA--LAIGISNWLNVTFLAIYMKFSTACAESRVPIS 158 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa--~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (398)
+..++.+|+.++++.+++.++..++++++...++. .++|..|++ +++++++.+..++.+++.+|++...+.+.++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNF- 217 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCC-
Confidence 99999999999999999999999888777544443 468999988 9999999999988877776554211111122
Q ss_pred hHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC
Q 015932 159 MELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAAVSTRVSNELGA 237 (398)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~vs~~~g~ 237 (398)
+++..|++++++.|..+++.........|..+.+.++.+ ++++|+.+.++.+++.. +..+++++..|.+++++|+
T Consensus 218 --~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 218 --RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred --CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335679999999999999999999999999887777764 56889999999988865 5689999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccC----cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015932 238 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN----EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGC 313 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 313 (398)
+|++++|+..+++.++...++++.+++++.+++++..+|.+ |+|..+.+.+++++++++.++.+++.+..+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 373 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYAR 373 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Confidence 99999999999999999999999999999999999988865 56778889999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 314 GWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 314 g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
||+|.+++.+..+. ++++++++++. +.+|..|+|+++.+++.+..+...++.+|+
T Consensus 374 g~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 374 KDTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 78999998887 568999999999999999998887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5e-33 Score=268.89 Aligned_cols=361 Identities=13% Similarity=0.102 Sum_probs=301.1
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+++..+.+||+.|++|+++.++.+++++++.++++++.+++ +.+.+++..+++.+++.. .++++..+..|+..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999887 777888877776666543 4678889999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhc-----ccccccchhHHHHHHHHHHHHHHHHHHHHhccccc--cc
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY-----KSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ES 153 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~-----~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~--~~ 153 (398)
+..++.+|+.++.++....+.++.++|+.++..++. +.+.|+.|+++++.+++.+..+...++.+++++.+ ..
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999888766654 23567889999999999999998776655443311 11
Q ss_pred CCCCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCh-----hhH---HHHH-HHHHHHHHHHHHHHHHHH
Q 015932 154 RVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNP-----QLE---TSVL-SVCLNTIQTLYAIPYGLG 224 (398)
Q Consensus 154 ~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~---~a~~-~~~~~i~~~~~~~~~~~~ 224 (398)
+.+..+.+++.+|+++++++|..++++........|..++++...+ ..+ .+.| +++.++..++..+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 1122234456789999999999999999999999888777543211 111 1222 356677788877789999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 225 AAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQG 304 (398)
Q Consensus 225 ~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 304 (398)
++..|.+++++|++|+++.++..+++.++...++.+.++.+..+++++..++.++++ +.+++++.+++.++..++.
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988875543 4678999999999999999
Q ss_pred HHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 305 VFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 305 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
+..+.+++.||+|.+++.++++. ++++++++.+...+.+|..|+|+++.+++.+..++..+..+|.
T Consensus 369 ~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 369 PLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 8899998887756789999999999999999999988877653
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=269.15 Aligned_cols=388 Identities=45% Similarity=0.781 Sum_probs=366.4
Q ss_pred CcchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 1 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
++.+..++++|++|.++++....+.+.+.......+++.+.++.+.+|++..+++|+++...+..|.++..+..+.+...
T Consensus 84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISME 160 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
..++.++|++++..+..+......++|+.+++++++.+++|..|++++..++++........+....+ +...|..++.+
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~ 242 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE 242 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999988887655 44556666666
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~ 240 (398)
++.++++++.++|..+....+++.+.......|.++++..++++.+++.++....++++.+++.+..+++++.+|++|.
T Consensus 243 -~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 -FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred -hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCCh
Confidence 8889999999999999999999999999999999999777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhH
Q 015932 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (398)
+++|.....+...++..+...+......++.+..+|++|+|+.+...+..++++...++++.+.+..+..+|.|+.+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 015932 321 FVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSL 390 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (398)
++++...+++++|....+.+..++|..|.|.++..+..+..........+.+|++...+.+++......+
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999889999999999999998888888888888899999999998887655443
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-32 Score=254.28 Aligned_cols=290 Identities=24% Similarity=0.391 Sum_probs=262.0
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
++|..+.++|+.|++|+|+.++..++++.+..+++++.+++ +.+.+++.++++.|++..+.+.+|+++..++.++..+.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999987 88899999998888899999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhc-ccc-cccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY-KSG-LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPIS 158 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~-~~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (398)
....+.+|+.++.+.....++.+.++++.++++++. .++ +|+.|+++++.+++++..++..++.+++++.+.++.+..
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL 208 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 999999999999999999999999999999999987 567 889999999999999999988877776433322211122
Q ss_pred hHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015932 159 MELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAG 238 (398)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~ 238 (398)
+.+++..|++++++.|..++++........+..+.+.+|.+ ++++|+++.++.++...++.+++++..|.+++++|++
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33446789999999999999999999999999888888754 6699999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHH
Q 015932 239 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLV 293 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 293 (398)
|+++.++..+++.++.+.++++.+.++.++++++.++|++|+++.+++..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.9e-31 Score=250.78 Aligned_cols=349 Identities=11% Similarity=-0.018 Sum_probs=289.1
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
++|.++.++|+ ++|+++.++++++++.+.++.+++.+++ +.+.+|+...++.+++. . .+..+..+..+...+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHH
Confidence 34557778887 6788889999999999999999999987 88889999888777753 2 4566667767777888
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISME 160 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
+...+.+|+.++.+.++...+.+.++|+.+ +++++. ..|+.|+++|+.+++.+..+...++++++++.+.++.++ +.
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SW 209 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cC
Confidence 899999999999999999999999999877 444443 239999999999999999888777776554322111112 22
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSG-LLPNPQLETSVLSVCLNTIQT-LYAIPYGLGAAVSTRVSNELGAG 238 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~~~vs~~~g~~ 238 (398)
+++.+|+++++|.|..+++....+....++.+++ .+|++ +++.|+.+.++.+. ...+..+++++..|.++++ +
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~--~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD--EVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 4466799999999999999998888888888885 77754 67999999999774 4788899999999999995 6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch
Q 015932 239 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNI 318 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (398)
|+++.++..++..+.....+++.++.++++++++..++.+|+ .+.+.+++++++++.++...+......+.+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998765 445678999999999998888888777778888888
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHH
Q 015932 319 AAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 369 (398)
Q Consensus 319 ~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 369 (398)
....++... ++++++++++. +.+|..|+++++.+++.+..+...+...
T Consensus 363 ~~~~~~~~~-~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQF-TLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHH-HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777764 88999999988 7789999999999999999988776554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.8e-30 Score=241.89 Aligned_cols=358 Identities=14% Similarity=0.117 Sum_probs=315.3
Q ss_pred chhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHh--CCChhHHHHHHHHHHHHHhhHHHHHH
Q 015932 3 SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYAT 79 (398)
Q Consensus 3 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l--~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (398)
++..|..++.. ++|+++.++..+..+.+..+.+++++++ +++++++.+.+ |.|+|..+.+.+++++..+..++..+
T Consensus 35 ~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l 113 (451)
T PF03023_consen 35 AAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGL 113 (451)
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888 7888999999999999999999999988 88899999887 66889999999999999999999999
Q ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccc---cchhHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 015932 80 MQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 156 (398)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (398)
...+.+.+|++++...+....++.++..++...++.. ..| +.+.++|.+++..++.+..+...+|.+...+...+
T Consensus 114 ~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~ 191 (451)
T PF03023_consen 114 SSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD 191 (451)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCC
Confidence 9999999999999999998888888776664444433 356 88999999999999999998888876543222233
Q ss_pred CChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 015932 157 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNEL 235 (398)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~~~vs~~~ 235 (398)
+++ +..|++++...|..+.+........++..+.+.++++ ++++++.+.++.+++..+ ..+++++..|..+++.
T Consensus 192 ~~~---~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~ 266 (451)
T PF03023_consen 192 WRD---PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLA 266 (451)
T ss_pred CCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3569999999999999999999999999999998865 679999999999998855 5799999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccc----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS----NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVAR 311 (398)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 311 (398)
.++|.++.++..+++++....+.+|.++.++.+++++..++. .|+|..+....++++++++.+++++..++...++
T Consensus 267 ~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fy 346 (451)
T PF03023_consen 267 AEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFY 346 (451)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987663 3677788899999999999999999999999999
Q ss_pred hcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 312 GCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
+.||+|.++..++++. ++++.+++.+. +.+|..|+++++.++..+..+......+|+
T Consensus 347 a~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 347 ALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 88999997777 778999999999999999999988888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=1.6e-26 Score=215.31 Aligned_cols=363 Identities=14% Similarity=0.055 Sum_probs=309.5
Q ss_pred CcchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHh-CC--ChhHHHHHHHHHHHHHhhHHH
Q 015932 1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLI-GQ--DPQISHEVGKFMIWLLPALFA 76 (398)
Q Consensus 1 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l-~~--~~~~~~~~~~y~~~~~~~~~~ 76 (398)
++++..|...|+..++++++.++..+....+...+.+.++++ ..+++.+...+ +. |++....+....++..|..++
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 357788899999888888888888888777888888888887 66677777454 22 233333678888999999999
Q ss_pred HHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 015932 77 YATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 156 (398)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (398)
..+.....+.+++.++...+.++.+..|+.-+.....+....+.-..+.++|++++-+.+.++.+..++|.+-..+.++.
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~ 225 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG 225 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 99999999999999999999999988888877555555544333477899999999999999999999987754444443
Q ss_pred CChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 015932 157 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAAVSTRVSNEL 235 (398)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~~~vs~~~ 235 (398)
++. +..|++.+...|..+.....++...+|+.+.+.+.+. +++++..+.++++++.. +..++++...|..|++.
T Consensus 226 ~~~---~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~ 300 (518)
T COG0728 226 FKD---PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300 (518)
T ss_pred CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 443 4679999999999999999999999999999999765 56899999999999985 55899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccc----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS----NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVAR 311 (398)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 311 (398)
.++|.++.++..+++++..+..++|.++.+..+++++..++. .+++......+.+..++++.+++.+..+....++
T Consensus 301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY 380 (518)
T COG0728 301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY 380 (518)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996663 2556677889999999999999999999999999
Q ss_pred hcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 312 GCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
+.+|+|.|+++++++. ++++.+++.+. +.+|..|.++++.++.++++.+.++..+|+
T Consensus 381 Ar~d~ktP~~i~ii~~-~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 381 AREDTKTPMKIAIISL-VVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HccCCCcChHHHHHHH-HHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 89999996665 678999999999999999999888877765
No 14
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=7.2e-25 Score=207.51 Aligned_cols=209 Identities=19% Similarity=0.186 Sum_probs=199.0
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 015932 162 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 241 (398)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~ 241 (398)
++..|+++++++|.+++++.+.....+|++++|+++.+ ++|+-++++++..+...+..+++.+..+.+||++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~--alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAE--ALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 35679999999999999999999999999999999944 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHH
Q 015932 242 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 321 (398)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (398)
++++..+++...+.+.+++..++.+.+++++..+++.++|+.+.+.+|+++..++.|+..++....+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHh-cC-CCcchHhHHHHHHHHHHHHHHHHHHHhCCH
Q 015932 322 VNLGAFYLCGIPTAAILGFW-LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 322 ~~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 373 (398)
.++++. +.|+.+++++++. ++ +|+.|+++|+.+++.+.++...++++|++.
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 9999999999988 46 999999999999999999999888877653
No 15
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.94 E-value=2.3e-24 Score=203.97 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=192.6
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 015932 163 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 242 (398)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~~ 242 (398)
++.|+++++++|.+++++.......+|..+++++++++ ++|+.+++.++.++...+..+++.+..+.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~-alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPV-YLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45799999999999999999999999999999986543 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHH
Q 015932 243 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFV 322 (398)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 322 (398)
+++..++++..+...+++.......+.+++..+++.|+|+.+.+.+|+++..++.|+..+..+..+++|+.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 323 NLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 323 ~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
++++. ++++++++++++.+++|+.|+++|+.+++.+..+...+++++
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 889999999998889999999999999999988887666554
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=6.3e-24 Score=202.78 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=188.6
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 015932 162 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 241 (398)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~ 241 (398)
++++|++++.++|.+++++.+.+....|..+++++|++ ++|+++++.++.++...+..|++++..+.+||++|+||+|
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~--alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPE--ALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 35679999999999999999999999999999999865 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHH
Q 015932 242 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 321 (398)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (398)
++++..+.+..+++.++++..++.+ +.+++..+|+.|+|+.+.+.+|+++..++.++..+.....+++|+.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877766 568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHh----cCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 322 VNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 322 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
.++++. +++++++|++++. |++|+.|+++|+.+++....+...+++++
T Consensus 163 ~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 8899999998864 36899999999999988877766555554
No 17
>PRK10459 colanic acid exporter; Provisional
Probab=99.93 E-value=6.6e-22 Score=191.34 Aligned_cols=328 Identities=11% Similarity=0.067 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhhHHHHHH
Q 015932 23 TQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSC 101 (398)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (398)
+..++..++.+..+++..++ +.+++++..+++ +++. ...+++..+..++..+.....+.++++++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 45667778888888887776 666666665554 4443 24567777778888888888899999888888887788
Q ss_pred HHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChHHHhcHHHHHHHHhhHHHHHHH
Q 015932 102 AALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICL 181 (398)
Q Consensus 102 ~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~ 181 (398)
...+...++...+.. .+.|..+.+++..+++.+..+......++ +. +.+.+++ ++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~--~~~~~~~---~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IY--RPALHFS---LASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cC--Cccceec---HHHHHHHHhhhHHHHHHHHH
Confidence 888887777666554 37899999999999998877655433222 21 1111222 35679999999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 015932 182 EWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIV 260 (398)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 260 (398)
.......|.++++...+++ +++.|+.+.++.+.+... ...+++...|..++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRILGAE-VLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhhchH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887776654 679999999998876544 456788999999886 578999999999999999999999
Q ss_pred HHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHH
Q 015932 261 VSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF 340 (398)
Q Consensus 261 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 340 (398)
+.+.+..+++++..++.+|+ ...+...++++++...+..........+++.||+|..+..+++.. ++.+|..+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~- 375 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG- 375 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH-
Confidence 99999999999887776554 567889999999999999999999999999999999999999886 77788777666
Q ss_pred hcCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 341 WLKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 341 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
+.+|..|+++++.+++.+..+...+...|
T Consensus 376 -~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 -QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999988888776633
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.93 E-value=1.3e-23 Score=200.66 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=190.6
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 015932 163 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 242 (398)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~~ 242 (398)
+..|+++++++|.++++.........|..+++++|++ ++|++++++++..+...+..+++++..+.+||++|++|+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~--alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKE--AMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4579999999999999999999999999999999875 66999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccc--CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhH
Q 015932 243 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS--NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 320 (398)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (398)
+++..+.+..+++.++++.+++.+.+++++..+++ .|+|+.+.+.+|+++..++.++..+.....+++||.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 321 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
+.++++. ++++++.+.+++. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999975 8899999998864 47899999999999999988876655543
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=8.6e-24 Score=201.51 Aligned_cols=206 Identities=15% Similarity=0.106 Sum_probs=193.3
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 015932 163 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLL-PNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 241 (398)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~ 241 (398)
+..|+++++++|..++++.+.+....|..+++++ |++ ++++++++.++.++...+..+++.+..+.++|++|+||+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~--~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE--GLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4669999999999999999999999999999996 643 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHH
Q 015932 242 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 321 (398)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (398)
++++..+++..+++.++++.+++.+.+++++..+++.|+++.+.+.+|+++..++.++..+.....+++|+.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 322 VNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 322 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
.++++. ++++++++++++.+++|+.|+++|+.+++.+..+...++++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999996 8999999999988889999999999999999998877666543
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=4.5e-23 Score=197.36 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=193.2
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~ 240 (398)
.++.+|+++++++|..++++........|..+++++|++ ++++++++.++......+..|++.+..|.+||++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 346789999999999999999999999999999999865 568899999998888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhH
Q 015932 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (398)
|++++..+.++.+.+.++++++++++.+++++..+++.|+++.+.+.+|+++.+++.++..+.....+++|+.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchHhHHHHHHHHHHHHHHHHHHHhCC
Q 015932 321 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCTN 372 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 372 (398)
+.++++. ++++++++++++. +++|+.|+++++.+++.+..+...++.+|++
T Consensus 165 ~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999997 8899999988853 5689999999999999999998877776543
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.89 E-value=9.4e-20 Score=175.86 Aligned_cols=277 Identities=16% Similarity=0.143 Sum_probs=222.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 015932 65 KFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYM 144 (398)
Q Consensus 65 ~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~ 144 (398)
..++...+..+........++.+|+.+++++.... .+....-......+. ........++..++..........+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (480)
T COG2244 118 LLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS-IVSSIFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILL 193 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999999999998886 443311111111111 13445566666666666665555554
Q ss_pred Hhccc-ccccCCCCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015932 145 KFSTA-CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGL 223 (398)
Q Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~ 223 (398)
+++++ ..+.. ++ +.++..|+.+++++|....+....+....|.++++...+++ .++.|+.+.++......+..++
T Consensus 194 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~a~~i~~~~~~~~~~l 269 (480)
T COG2244 194 GKKKRGLKRPI--LR-FSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSAAQRLVSLLLIVASAL 269 (480)
T ss_pred HHhhhhccccc--cC-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HheecccccHHHHHHHHHHHHH
Confidence 42221 11111 11 13467899999999999999999999999999888776654 6788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHH
Q 015932 224 GAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQ 303 (398)
Q Consensus 224 ~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 303 (398)
+.+..|..++.+.++|.++.++..+++.++...++.+..+.+..+++++..++.+++ ...+...+++++++.++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887776554 223778999999999999999
Q ss_pred HHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHH
Q 015932 304 GVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQ 354 (398)
Q Consensus 304 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~ 354 (398)
......+++.|+++..++.+.++. +.++.+++.++ +++|..|+..++.
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a~~ 395 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI--PRFGLIGAAIATA 395 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHHHH
Confidence 999999999999999999999997 88888888888 7789999999983
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.83 E-value=3.8e-18 Score=157.36 Aligned_cols=194 Identities=19% Similarity=0.160 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 015932 174 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 253 (398)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 253 (398)
|.+++++........|..+++++|++ ++++++++.++..+...+..+++++..|.+++++|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 77888888888999999999999854 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhh
Q 015932 254 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 333 (398)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (398)
....+++.+++.+++++++..+++.|++..+++.+++++++++.++.++.....+.+|+.||++.++..++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888999999999999999999999999999999999999999999987 78888
Q ss_pred HHHHHHH-hcC-CCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 334 TAAILGF-WLK-FRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 334 l~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
+.+.+.+ ..+ +|..|+++++.+++.+..+...++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 455 779999999999999998887766665
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.83 E-value=1.8e-20 Score=153.54 Aligned_cols=162 Identities=22% Similarity=0.410 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 015932 174 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 253 (398)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~ 253 (398)
|.+++++.+......+..+.+++|++ ++++++++.++.++...+..|++++..+.+||++|++|+|++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88899999999999999999999765 5599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhh
Q 015932 254 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 333 (398)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (398)
...++++.+++.+.+++++..+|++|+|+.+++.+++++..++.++..+.....++++|.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 015932 334 TAAI 337 (398)
Q Consensus 334 l~~~ 337 (398)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 24
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.54 E-value=6.2e-13 Score=125.59 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=188.3
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 015932 162 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQT-LYAIPYGLGAAVSTRVSNELGAGNV 240 (398)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~~~vs~~~g~~~~ 240 (398)
.++.|++++++.|.++....+.....++..+.|++|+.+ .++.+++++..+. .+.+..|++++..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~le--Laa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLE--LASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchH--HHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999999864 4888888887766 4667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhH
Q 015932 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (398)
+......+++.......+++.+.+. .+.+++...+++|+++...+..|.++..+..+.+.........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999999999988888554 466999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 321 FVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
+...... .+++++++.+.+.+++|..|+.++..+++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999997 9999999999999999999999999999999999887776553
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.52 E-value=7.3e-13 Score=128.31 Aligned_cols=196 Identities=12% Similarity=0.159 Sum_probs=160.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHH
Q 015932 169 FHFAIPSAVMICLEWWSFELLILMSGL-LPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVA 246 (398)
Q Consensus 169 l~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~vs~~~g~~~~~~~~~~ 246 (398)
.|-+.|.++++.........+..+.++ +|++ +.++++.+.++..+...+. .|++++....++|+.|++|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~--~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAE--GVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 356788888888888888888887777 4654 5588999999988888876 49999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHH
Q 015932 247 VYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGA 326 (398)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 326 (398)
.+.+..+.+..+++.+++++++++++...+.+|++.. .++++.++..++..+..+..+.+|+.+|.+..+..+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 9999999999999999999999999987776666543 478888999999999999999999999999999999988
Q ss_pred HHHhhhhHHHHHHH-----hcCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 327 FYLCGIPTAAILGF-----WLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 327 ~~~~~i~l~~~l~~-----~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
. ++++.+...+.. ..++++.|..+++.++..+..+...++++|+
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 565544333322 2345677888888889888888776655543
No 26
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.40 E-value=1.8e-10 Score=102.45 Aligned_cols=217 Identities=15% Similarity=0.174 Sum_probs=154.4
Q ss_pred chhhhHHHhhhCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 3 SALETLCGQAYGAQQY--QRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 3 ~~~~~~~s~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
.|....+.|+..+.++ ++.+.+.........+.+++........ ...+.++. .. .+........+.....
T Consensus 54 ~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 125 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIA----SFFGNPSL-SL---ILIILALLILILSSLS 125 (273)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCchH-HH---HHHHHHHHHHHHHHHH
Confidence 3455566666655444 3445555555554444444443332222 23333322 21 1222222222577888
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISME 160 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
......+++.++.+.....++...++..++...++.. +.+..+..++..++..+..+....+.+|+.+ . +.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 199 (273)
T PF01943_consen 126 SVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--P---RFSFF 199 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c---ccccc
Confidence 8888999999999999998999988888777666654 3448999999999999998888877775542 1 12222
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNE 234 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~ 234 (398)
+++..|++++.+.|..++++........|.++++.+.+.+ ++|.|+++.++......+..++.++..|..++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~-~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPE-AVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2467799999999999999999999999999998887765 689999999999999999999999999999986
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.40 E-value=9.5e-11 Score=113.99 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=147.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhc-CCChhhHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCChHHHHH
Q 015932 170 HFAIPSAVMICLEWWSFELLILMSGL-LPNPQLET-SVLSVCLNTIQTLYAIPY--GLGAAVSTRVSNELGAGNVQKARV 245 (398)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~-a~~~~~~~i~~~~~~~~~--~~~~~~~~~vs~~~g~~~~~~~~~ 245 (398)
|-+.-..+.++........+...+++ +|++ +. ++++.+.++......+.. |++++..+...++.+++ |++++
T Consensus 4 k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~--~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 4 KSTLIVSLGTLFSRITGFVRDAIIASAFGAG--LTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 44444555666666666777777777 6765 45 689999999877765543 68888888877665433 67777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhchhhhhccc--cCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHH
Q 015932 246 AVYAVIFMAVTETI-VVSATLFASRRVFGYVF--SNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFV 322 (398)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 322 (398)
....+......... ...++.+++++++..++ +.|++..+.+.+|+++..++.++..+..+..+++|+.||.+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776666664444 45677888899999887 3466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCcchHh--HHHHHHHHHHHHHHHHHHHhC
Q 015932 323 NLGAFYLCGIPTAAILGFWLKFRGRGLW--IGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 323 ~~~~~~~~~i~l~~~l~~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~ 371 (398)
+++.. +.++...+. ..+++|..|+. +++.++..+..+....+.+|+
T Consensus 160 ~i~~~-i~~i~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 160 PILFN-IGVILSLLF--FDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHH-HHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99987 555443333 33678999988 999999999888876665543
No 28
>PRK15099 O-antigen translocase; Provisional
Probab=99.32 E-value=1.2e-10 Score=110.34 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=135.8
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 189 LILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFA 267 (398)
Q Consensus 189 ~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
..++...+|++ +.+..+...++..+...+ ..|++++....++++ ++|+|+.++....++...+..+++.+++.+.
T Consensus 25 ~~i~ar~Lg~~--~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~ 100 (416)
T PRK15099 25 VKLLAVSFGPA--GVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLL 100 (416)
T ss_pred HHHHHhhcCcH--HHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566654 457777788877777766 468888888889988 6889999999999999999999999999999
Q ss_pred chhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcc
Q 015932 268 SRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGR 347 (398)
Q Consensus 268 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 347 (398)
+++++...+.+|++ . ..++.+..+..++..+.....+.+|+.||++.++...+++. ++++.+ +++.+.. .|+.
T Consensus 101 ~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~~-~Gv~ 173 (416)
T PRK15099 101 AAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYRL-GGYE 173 (416)
T ss_pred HHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH-hcch
Confidence 99999887776665 2 24677777777777888999999999999999999999987 777666 4444322 3999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHh
Q 015932 348 GLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 348 g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
|+++|+.+++.+..+...++.+|
T Consensus 174 Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 174 GALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776555544
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.30 E-value=4.1e-10 Score=107.25 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=132.2
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC----CChhHHHHHHHHHHHHHhhHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFA 76 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~----~~~~~~~~~~~y~~~~~~~~~~ 76 (398)
++..-|..||...++|+++.++.+++++...+.+.++.++. ..+++|+.+.+. .++|..+.+...+++..+++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34566888999999999999999999999999999999987 889999998773 3677788889999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 015932 77 YATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 148 (398)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~ 148 (398)
+.+...+...+.+++|.|.++..++.+.++|++++.++... +|..|.++|+.++.++..+.....++|+.
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888765 99999999999999999999988887664
No 30
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.29 E-value=1e-12 Score=107.37 Aligned_cols=112 Identities=19% Similarity=0.320 Sum_probs=107.5
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+.|.++.+||++|++|++++++..+.++.+..+++++.+++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999998 88899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHH-Hhhhhhhhh
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAAL-CLHIPICWS 113 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~~~~ 113 (398)
...++++++.|+.++..+.++... ++|++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999998874
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.26 E-value=3.6e-09 Score=99.83 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=130.7
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhC----CChhHHHHHHHHHHHHHhhHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFA 76 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~----~~~~~~~~~~~y~~~~~~~~~~ 76 (398)
++...|..||...++|+++.++..++++.+++++.++.+.. ..+++|+.+.+. .+++....+.+.++....++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 45677899999999999999999999999999999999997 899999998873 3566667777889999999999
Q ss_pred HHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 015932 77 YATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 149 (398)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~ 149 (398)
+.+...+...+.+.++.|.++.+.++..++|+.+++.++.. +|..|.++++.++.+++...+++.++|+..
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999777655 888889999999999999998888876653
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.19 E-value=2.4e-08 Score=87.66 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=144.0
Q ss_pred hhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015932 4 ALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPL 83 (398)
Q Consensus 4 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (398)
|....+.+. .++|+++.++..+.......+.+++..++ ...+..+++ +++. ..++....+..+.....+..
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 444445552 33455555666555555444444433333 222222333 3332 23466677788889999999
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChHHHh
Q 015932 84 IRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQ 163 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
++.++++++.+..........+...+....+... +.+..+..++..++..+..++.....+++.+ .+. + .+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~--~~ 181 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFYLLRRKLR-----LSF-K--FS 181 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHhccccC-----CCc-h--hh
Confidence 9999999999999888888888885444444433 3488899999999999888776654332211 111 1 12
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 015932 164 GIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSN 233 (398)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~~~~~~vs~ 233 (398)
..| .++.+.|..+.+.........|.++++. ++. + ++|.|+++.++...+. .+..++++...|.++|
T Consensus 182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~-~-~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 182 WRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGP-E-AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 224 7999999999999999999999999888 643 3 6688999999999888 8889999999999886
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=98.87 E-value=2.1e-06 Score=83.41 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=110.8
Q ss_pred hhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015932 5 LETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPL 83 (398)
Q Consensus 5 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (398)
..|..|+. ++|+++.++.+++.+.+...++++..+. ..+++|+...+..++ ...+...++++.+...+....+..
T Consensus 268 ~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 268 AFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555664 5778889999999999999999998886 788999988775543 356678899999999999999999
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 015932 84 IRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 146 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~ 146 (398)
...+++.|+.+.....+++.+++++...+.+.. .+|+.|+++++.+++.+..+...++..|
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888788887777766655543 4799999999999999988888777644
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.79 E-value=2.8e-06 Score=81.94 Aligned_cols=202 Identities=9% Similarity=0.010 Sum_probs=151.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh--
Q 015932 166 GEFFHFAIPSAVMICLEWWSFELLILMSGL--LPNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSNELGAGNV-- 240 (398)
Q Consensus 166 k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~~~~~~vs~~~g~~~~-- 240 (398)
++.++.......+++...+...-|.+++.. +.+.+ +.+.|+++++..++.. .+...+--+.....++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 788999999999999999988888887777 55443 4588999999977775 44467888887787877654433
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015932 241 -------QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGC 313 (398)
Q Consensus 241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 313 (398)
++..+.+...++....+++++..+....++.+..++.++.=..+.+...+++++...|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4466667777777777777777666667777776664432222334679999999999999999999999999
Q ss_pred CccchhHHHHHH---HHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 015932 314 GWQNIAAFVNLG---AFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 314 g~~~~~~~~~~~---~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
.+.+.....+-. .. ++.+..+|.+... ++|..|..+|.++.+.++.+....+.++
T Consensus 412 a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 887664443322 22 4556677888755 7999999999999999998888776654
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.9e-05 Score=69.81 Aligned_cols=199 Identities=13% Similarity=-0.004 Sum_probs=133.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhh---cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChH
Q 015932 166 GEFFHFAIPSAVMICLEWWSFELLILMSG---LLPNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSNELGAGNVQ 241 (398)
Q Consensus 166 k~~l~~~~p~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~~~~~~vs~~~g~~~~~ 241 (398)
++..+.......+++...+...-+..++. .+.-+++ |.|.++++..++.. .+...+-.......++....++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 45666666666677766666665554443 2222334 66999988866665 455688888888888888777777
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch
Q 015932 242 KARVAV---YAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNI 318 (398)
Q Consensus 242 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (398)
+.|+.. ....+....+++.++......++....++++++=....+...++++|...++.+++.+..+++.+.++.+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 776654 44555555555555555555566666666543322233457899999999999999999999999887665
Q ss_pred hHH---HHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHH
Q 015932 319 AAF---VNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 369 (398)
Q Consensus 319 ~~~---~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 369 (398)
.-. ..++.. +..+.++|++.. .+|..|..+|..+.+.+.-.....+++
T Consensus 397 i~~~n~~mlafS-viflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 223333 456778888884 567788888888887777666544443
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.54 E-value=5.6e-06 Score=80.12 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=110.5
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 80 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (398)
+...-|.+||...++|+++.++..++++.+....+++..+. ..+++|+...+..++.. .+...+.++.+..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999997 88899998876554432 1556788999999999999
Q ss_pred HHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHH
Q 015932 81 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGIS 132 (398)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~ 132 (398)
......+++.|+.+.....+.+..++|.+++.+++.. .|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 9999999999999999999999999999999999855 8899999999 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.38 E-value=3.1e-06 Score=67.58 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHH
Q 015932 289 MAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIIT 368 (398)
Q Consensus 289 ~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~ 368 (398)
++++++++.+++++.....+.+++.||+|..+..++++. ++++++++.+. +++|..|+++|+.+++........+..
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999997 99999999996 889999999999999999999988888
Q ss_pred HhC
Q 015932 369 TCT 371 (398)
Q Consensus 369 ~~~ 371 (398)
+|+
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 774
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.31 E-value=2.3e-05 Score=62.52 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=72.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 015932 67 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 146 (398)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~ 146 (398)
+++.+++.++..+.+...+.+++.||++.......++.++|++++++++. ++|..|+++|+.+++........++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999974 5999999999999999999988888775
Q ss_pred c
Q 015932 147 S 147 (398)
Q Consensus 147 ~ 147 (398)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.20 E-value=0.00042 Score=61.36 Aligned_cols=167 Identities=18% Similarity=0.246 Sum_probs=104.4
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 189 LILMSGLLPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFA 267 (398)
Q Consensus 189 ~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
..++...+|.+ +.+.|+....+..+...+. .|++++.....+++..+ .++.++............++........
T Consensus 23 ~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 98 (273)
T PF01943_consen 23 IPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLILLI 98 (273)
T ss_pred HHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555654 4577999999988888774 69999998888887543 3344444444444333333333332222
Q ss_pred chhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcc
Q 015932 268 SRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGR 347 (398)
Q Consensus 268 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 347 (398)
.. .+. +++... .+........++..........+++.++.+.....++... +..+.....+.. ...+..
T Consensus 99 ~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 167 (273)
T PF01943_consen 99 AS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLF-LGSSLW 167 (273)
T ss_pred HH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HhhhHH
Confidence 22 333 332221 1222222222577888899999999999999999998887 555544444443 233478
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHh
Q 015932 348 GLWIGIQAGAFTQTLLLGIITTC 370 (398)
Q Consensus 348 g~~~a~~i~~~~~~~~~~~~~~~ 370 (398)
+...+..++..+..+......+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 168 GFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999998888877776664
No 40
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.03 E-value=0.0015 Score=57.13 Aligned_cols=163 Identities=14% Similarity=0.236 Sum_probs=106.1
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 189 LILMSGLLPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFA 267 (398)
Q Consensus 189 ~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
..++...++.+ +.+.|+....+..+...+. .|+.+.... ..++|+++.++..+.........+++..++...
T Consensus 8 ~~~lar~l~~~--~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13440_consen 8 LILLARYLGPE--DFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAIL 80 (251)
T ss_pred HHHHHHHCCHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556655 4477888888888777764 455554433 234677777777777666655555444443332
Q ss_pred chhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcc
Q 015932 268 SRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGR 347 (398)
Q Consensus 268 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 347 (398)
... .+ .+++.. .++....+..++........+.+++.+|.+.....+.... +..+.....+.. .+.+..
T Consensus 81 ~~~----~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 149 (251)
T PF13440_consen 81 IAY----FF-GDPELF----WLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLW 149 (251)
T ss_pred HHH----Hh-CChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHH
Confidence 222 33 333322 3566777788888999999999999999999999999887 444333333332 233788
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 015932 348 GLWIGIQAGAFTQTLLLGIITT 369 (398)
Q Consensus 348 g~~~a~~i~~~~~~~~~~~~~~ 369 (398)
+..++..++..+..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8889988888887776655443
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.02 E-value=0.0053 Score=53.89 Aligned_cols=169 Identities=9% Similarity=0.030 Sum_probs=114.5
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 015932 163 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLP-NPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 241 (398)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~ 241 (398)
..++++.++-+|..+++....+.-+..+--+++-. ++....|+|+++..+.-++..+...+-+....++.+ +++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 45689999999999999988887777776665533 332347999999999999999988887776665543 222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-HHhchhh-hhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccch
Q 015932 242 KARVAVYAVI-FMAVTETIVVSAT-LFASRRV-FGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNI 318 (398)
Q Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (398)
|+....++ ..+.........+ .-.+.+. +..+++-|+++.+.+...+.++....+++++.....+++-=.+++..
T Consensus 83 --rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 83 --RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22222222 2222222221211 2233333 34777889999999999999999999999999999988886677777
Q ss_pred hHHHHHHHHHHhhhhHHHHHH
Q 015932 319 AAFVNLGAFYLCGIPTAAILG 339 (398)
Q Consensus 319 ~~~~~~~~~~~~~i~l~~~l~ 339 (398)
....++... +..+.....+.
T Consensus 161 V~~aSI~~v-~~qvV~v~~ll 180 (345)
T PF07260_consen 161 VGSASIADV-IAQVVLVAILL 180 (345)
T ss_pred eehHHHHHH-HHHHHHHHHHH
Confidence 777776654 33444344444
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=0.009 Score=52.51 Aligned_cols=149 Identities=14% Similarity=0.034 Sum_probs=89.5
Q ss_pred HHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhccc---ccccchhHH
Q 015932 51 VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS---GLGNLGGAL 127 (398)
Q Consensus 51 ~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~---~~g~~gaa~ 127 (398)
+..+.+|++.+.+...+.++...-.+..+....++++--+++.......++......+++..+++... ..+..--.+
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 34588999999999999999888888888888888876555555555545444444444444444321 111111112
Q ss_pred HHHHHHHHHHHHH-HHHHHhcccccccCCCCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-CCCh
Q 015932 128 AIGISNWLNVTFL-AIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNP 199 (398)
Q Consensus 128 at~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-l~~~ 199 (398)
|...+..+-+-+. +-+..+..+..+...+.++.+-..+++++++.+|.+.....+...-.+.+.+.++ ++++
T Consensus 196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3333333222222 2222222222222222233333567999999999999999988888888888877 6554
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.40 E-value=0.0051 Score=59.78 Aligned_cols=128 Identities=14% Similarity=0.055 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc---Cchh
Q 015932 19 QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ---SLII 94 (398)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 94 (398)
++..+.+...+.+...+|+++..+ -..++.+++.++.+.=..+.+...+++.+..+|+.+++....+++++. ++..
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 456778888888888889888887 788888888875432222333556888889999999999999988762 2333
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 015932 95 PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 147 (398)
Q Consensus 95 ~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (398)
.......+..++-+..+++|... ++|..|..+|+++...+-.++...++++.
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444677777778888998876 79999999999999999999998888754
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.18 E-value=0.17 Score=45.71 Aligned_cols=257 Identities=10% Similarity=0.024 Sum_probs=131.4
Q ss_pred HHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCChHHHh
Q 015932 84 IRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQ 163 (398)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
..++.+.++.+....+-..+.++...+..++- ..+..|..++-.++..+.......+..+.-+. +.+..++.- +
T Consensus 151 ~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~-~~~i~FdFL--~ 224 (467)
T COG4267 151 MIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKS-SRRIGFDFL--L 224 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc-ccccceehh--h
Confidence 33445566666666666777777776665553 45889999999999998888877776654221 111222221 1
Q ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHH-------HHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 015932 164 GIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETS-------VLSVCLNTIQTLYAIP-----YGLGAAVSTRV 231 (398)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-------~~~~~~~i~~~~~~~~-----~~~~~~~~~~v 231 (398)
..++.. ...+.....++....+.++.=..++.. .++ -|-+..-...+...|. ..+-+...+.-
T Consensus 225 ~~~~y~----SLllIg~FY~lgiwid~FifW~~~~~~-~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Y 299 (467)
T COG4267 225 YRRKYP----SLLLIGFFYNLGIWIDNFIFWKVPTGI-EIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENY 299 (467)
T ss_pred hhhcch----HHHHHHHHHHhHhhhhheeeEecCCCC-EeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHH
Confidence 111111 122233444555566655432222111 111 1222222122222222 12222222221
Q ss_pred HHHh----c-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHH
Q 015932 232 SNEL----G-------AGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMD 300 (398)
Q Consensus 232 s~~~----g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~ 300 (398)
-+.+ | +++.++.....++.+.-.+-.....++.++++++.+...++-++.-. +..++-..+.-..
T Consensus 300 k~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l----~lF~vd~lg~s~~ 375 (467)
T COG4267 300 KEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYL----DLFYVDVLGVSCQ 375 (467)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH----HHHHHHHHHHHHH
Confidence 1111 1 23445556667777777788888889999999999998887665333 3444544444444
Q ss_pred HHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHH-hcCCCcchHhHHHHHH
Q 015932 301 SLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF-WLKFRGRGLWIGIQAG 356 (398)
Q Consensus 301 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~-~~~~g~~g~~~a~~i~ 356 (398)
.....+-.+.--..+-+..+-.+..-. +.|-.+.++... .|++--.|...|..+.
T Consensus 376 i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 376 IVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 444444444444455555555554443 555566666552 2444334444444443
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0083 Score=55.18 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=96.4
Q ss_pred HHhhhCCC---ccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 015932 9 CGQAYGAQ---QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLI 84 (398)
Q Consensus 9 ~s~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 84 (398)
.+|...++ |.+++..++.+.+.+....|+++... ...+++.+.+.+++.=........+++.+..+|+.+++....
T Consensus 306 FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitE 385 (530)
T KOG2864|consen 306 FARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITE 385 (530)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHH
Confidence 44444444 44455567777777777777777766 777888888876543323333456889999999999999999
Q ss_pred HHHhhcC---chhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 015932 85 RYFQSQS---LIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 147 (398)
Q Consensus 85 ~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (398)
+++.+-. +-...-....+..+...+.+++++-. +|..|..+|+++...+-.+..+.++++.
T Consensus 386 aF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 386 AFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887522 11122222566667778888998877 6779999999999999999887777654
No 46
>PF14184 YrvL: Regulatory protein YrvL
Probab=83.89 E-value=18 Score=28.00 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q 015932 24 QTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKF-MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCA 102 (398)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (398)
.+...+.+.+...++.+..+.....+++.+|.+=|....-..| +.....+.|+......+...+...+..+... ...
T Consensus 3 ~~~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l 80 (132)
T PF14184_consen 3 KFIIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILL 80 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHH
Confidence 3455566666666666666777788889998774433332222 3445667788888888877776553333333 477
Q ss_pred HHHhhhhhhhhhhcccccccchhHHHHH
Q 015932 103 ALCLHIPICWSLVYKSGLGNLGGALAIG 130 (398)
Q Consensus 103 ~~~~~i~~~~~li~~~~~g~~gaa~at~ 130 (398)
...+...+++..++.-|.=+.+.-+.+.
T Consensus 81 ~~~id~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 81 AFIIDFLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeCcH
Confidence 7788888888888764433444444333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=83.52 E-value=37 Score=31.35 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHH
Q 015932 219 IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVI 298 (398)
Q Consensus 219 ~~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 298 (398)
+..|++....-.+|...=+||++++...+.-++......+.+.+.+.. +.+|+. ...+=...+....
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~~----si~yk~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQY----SIVYKILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCch----hHHHHHHHHHHHH
Confidence 446788888888888888888888888888887777777666653222 122221 1123334455666
Q ss_pred HHHHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHH
Q 015932 299 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 369 (398)
Q Consensus 299 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 369 (398)
..+...+....+.+++|-+.......++. .+.+.++.++- +.+..|.-++..++......+...+..
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777888999999999999998888886 77777777665 458899999999998887777655543
No 48
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.08 E-value=15 Score=30.93 Aligned_cols=70 Identities=11% Similarity=0.215 Sum_probs=40.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 015932 17 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP---------QISHEVGKFMIWLLPALFAYATMQPLIRY 86 (398)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 86 (398)
++++..+.+..++.-.+.+-.++++++.+..|+.++++.|. +..+....|+++++.++|.......+...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~~ig~~i~l 220 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIFAIGLFIYL 220 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555556665555555555555666677777776432 23344667788888888776644444333
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=67.17 E-value=40 Score=23.55 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 015932 221 YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIV 260 (398)
Q Consensus 221 ~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 260 (398)
.-++...+..+-..+.+||++++++.-+++.+++..-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3444445566777888999999999999998888654443
No 50
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=58.47 E-value=51 Score=29.91 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhhHHHhhhCCCccch--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHH
Q 015932 5 LETLCGQAYGAQQYQR--IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQP 82 (398)
Q Consensus 5 ~~~~~s~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (398)
.....+|+...+.+.+ ..+.+.-.+.--.+.++..+++..|+..=-...+++.++.-.+..+........+......-
T Consensus 190 i~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k 269 (342)
T COG0798 190 IAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYFIAK 269 (342)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCh
Q 015932 83 LIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISM 159 (398)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (398)
..+. ..++..+..+...-++.--.+.-.+-.++ .-.|+|++++++.++...+++.+.+--++.++.+.+-++
T Consensus 270 ~lgl--~y~~~~~~~ft~aSNnfeLAiAvAi~lfG---~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~ 341 (342)
T COG0798 270 ALGL--PYEDAAALVFTGASNNFELAIAVAIALFG---LTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER 341 (342)
T ss_pred HhCC--ChhhhhceeeeeccccHHHHHHHHHHhcC---ccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=48.98 E-value=2.3e+02 Score=26.56 Aligned_cols=37 Identities=3% Similarity=-0.048 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhc
Q 015932 238 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGY 274 (398)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (398)
.+.++.+++.+++.+.+.....+...+.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999888888877777765
No 52
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=30.24 E-value=5e+02 Score=24.91 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=53.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015932 172 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVI 251 (398)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~~~~~~~~~~~~ 251 (398)
+-|.+++.+..-+....-.++.....+++-+ +.-+.-....|+|.++...+++.+|+.+-.+-+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 5677766665544555555565555443211 1223445568999999999999999999888888887776
Q ss_pred HHHHHHHHHHH
Q 015932 252 FMAVTETIVVS 262 (398)
Q Consensus 252 ~~~~~~~~~~~ 262 (398)
.......+++.
T Consensus 450 Afivs~~iv~~ 460 (510)
T KOG2468|consen 450 AFIVSSFIVCL 460 (510)
T ss_pred HHHHHHHHHHH
Confidence 66554444333
No 53
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.13 E-value=1.4e+02 Score=26.95 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHhhhhHHHHHHH-hcCCC------cchHhHHHHHHHHHHHHHHHHHHHhCCH
Q 015932 316 QNIAAFVNLGAFYLCGIPTAAILGF-WLKFR------GRGLWIGIQAGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~l~~~l~~-~~~~g------~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 373 (398)
.+..-..++++. +..|+.++-+. +.+++ -...+........+.++..+++++|++|
T Consensus 255 N~~mk~LTvvt~--IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 255 NEIMKILTVVST--IFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445555553 44566655443 22211 1122333333344445556777787777
No 54
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=29.47 E-value=5e+02 Score=24.68 Aligned_cols=29 Identities=7% Similarity=-0.096 Sum_probs=19.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 235 LGAGNVQKARVAVYAVIFMAVTETIVVSA 263 (398)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (398)
+++-+.++..+....+.+.+..+...+..
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~ 284 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAA 284 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777665554443
No 55
>PTZ00370 STEVOR; Provisional
Probab=28.18 E-value=1.1e+02 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=18.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHhC---CHHHHHH
Q 015932 346 GRGLWIGIQAGAFTQTLLLGIITTCT---NWEKQAS 378 (398)
Q Consensus 346 ~~g~~~a~~i~~~~~~~~~~~~~~~~---~~~~~~~ 378 (398)
..|++.-..+--.+..++++++++|+ .|++...
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 35665555555566666665555543 3555443
No 56
>PRK09546 zntB zinc transporter; Reviewed
Probab=28.09 E-value=1.8e+02 Score=26.53 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhHHHHHHH-hcCCC-c-----chHhHHHHHHHHHHHHHHHHHHHhCCH
Q 015932 321 FVNLGAFYLCGIPTAAILGF-WLKFR-G-----RGLWIGIQAGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~-~~~~g-~-----~g~~~a~~i~~~~~~~~~~~~~~~~~~ 373 (398)
..++++. +.+|+.++-+. +.+++ + ...++...+..++.++..+++++|++|
T Consensus 266 ~Ltilt~--IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAM--VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHH--HHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455553 45577666443 22221 1 112333333344445556667777776
No 57
>PRK10739 putative antibiotic transporter; Provisional
Probab=27.87 E-value=3.6e+02 Score=22.55 Aligned_cols=56 Identities=7% Similarity=0.008 Sum_probs=35.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHH
Q 015932 229 TRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTT 288 (398)
Q Consensus 229 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 288 (398)
|..-......++++-|+..++....+..+ ..++.++.+.+..+|+-+.+..+.+..
T Consensus 22 piflslt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIRELLIALLV----MLVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333444567777777777666665544 346777888999999877554554433
No 58
>PF13347 MFS_2: MFS/sugar transport protein
Probab=25.91 E-value=5.6e+02 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=10.0
Q ss_pred HHHHhhcCccchhHHHHHHH
Q 015932 307 SGVARGCGWQNIAAFVNLGA 326 (398)
Q Consensus 307 ~~~l~~~g~~~~~~~~~~~~ 326 (398)
..+.+=.|+.+.......+.
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred HHHHHHccceeehhhhHHHH
Confidence 44444556666544444443
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.49 E-value=1.1e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=10.2
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 347 RGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 347 ~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
.|+.+|..++-+...++..+.++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333334433
No 60
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.48 E-value=2.3e+02 Score=25.81 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHH-hcCCC------c-chHhHHHHHHHHHHHHHHHHHHHhCCH
Q 015932 317 NIAAFVNLGAFYLCGIPTAAILGF-WLKFR------G-RGLWIGIQAGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 317 ~~~~~~~~~~~~~~~i~l~~~l~~-~~~~g------~-~g~~~a~~i~~~~~~~~~~~~~~~~~~ 373 (398)
...-..++++ .+.+|..++-+. +.+++ - +|.|+ .++..++.+++.+++++|++|
T Consensus 260 ~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~-~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 260 EIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPI-ALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHH-HHHHHHHHHHHHHHHHHhcCc
Confidence 3344445555 345566665553 22222 1 23333 334444555666677777777
No 61
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.32 E-value=3.2e+02 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhCCH
Q 015932 356 GAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~ 373 (398)
...+.++..+++++|++|
T Consensus 298 ~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 298 LMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 334444456667777777
No 62
>PRK01637 hypothetical protein; Reviewed
Probab=21.27 E-value=5.9e+02 Score=22.64 Aligned_cols=14 Identities=0% Similarity=0.081 Sum_probs=6.5
Q ss_pred HHHHHHHHHhcCCC
Q 015932 226 AVSTRVSNELGAGN 239 (398)
Q Consensus 226 ~~~~~vs~~~g~~~ 239 (398)
+...-..+.++.++
T Consensus 111 ~l~~a~N~i~~~~~ 124 (286)
T PRK01637 111 SIDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHHhCCCC
Confidence 33334455565443
No 63
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=20.96 E-value=7e+02 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 015932 17 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLV 51 (398)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 51 (398)
++++.+++++.+...+.+...+...+ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999987 777888876
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.58 E-value=1.3e+02 Score=22.96 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Q 015932 123 LGGALAIGISNWLNVTFLAIYMKFS 147 (398)
Q Consensus 123 ~gaa~at~i~~~~~~~~~~~~~~~~ 147 (398)
.|..+|.+.+-+...++..++++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443333333333334444433
Done!