Query 015932
Match_columns 398
No_of_seqs 203 out of 1918
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 8.8E-44 3E-48 340.2 28.4 369 2-372 68-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 9.1E-20 3.1E-24 173.7 17.8 207 161-371 7-217 (460)
3 2ks1_B Epidermal growth factor 41.2 51 0.0018 19.1 4.2 26 122-147 13-38 (44)
4 2k1k_A Ephrin type-A receptor 33.4 44 0.0015 18.6 2.9 18 122-139 13-30 (38)
5 2jwa_A Receptor tyrosine-prote 33.1 53 0.0018 19.0 3.2 7 141-147 32-38 (44)
6 4ev6_A Magnesium transport pro 31.2 88 0.003 27.4 6.2 52 319-373 279-338 (339)
7 4aps_A DI-OR tripeptide H+ sym 23.1 4.1E+02 0.014 23.8 22.0 10 229-238 340-349 (491)
8 2iub_A CORA, divalent cation t 17.1 87 0.003 27.7 3.3 19 355-373 344-362 (363)
9 2knc_B Integrin beta-3; transm 10.4 3.9E+02 0.013 17.5 4.4 18 346-363 10-27 (79)
10 1qle_D Cytochrome AA3, ccytoch 8.1 3.5E+02 0.012 15.4 4.7 35 235-269 5-39 (43)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=8.8e-44 Score=340.16 Aligned_cols=369 Identities=22% Similarity=0.345 Sum_probs=338.5
Q ss_pred cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHH
Q 015932 2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQ 81 (398)
Q Consensus 2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (398)
+.|..+.+||+.|++|+++.++.+++++.+.++++++.++++.+.+|+..+++.|++..+.+..|+++..++.++..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998877888899999899999999999999999999999999999
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcc-c---ccccchhHHHHHHHHHHHHHHHHHHHHhccccccc--CC
Q 015932 82 PLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-S---GLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RV 155 (398)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~-~---~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (398)
.+++.+|+.++.+.+...++++.++|++++++++.. + ++|+.|+++|+.+++.+..+...++.+++++.++. +.
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 999999999999999999999999999999999986 3 79999999999999999999988888776543221 12
Q ss_pred CCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 156 PISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL 235 (398)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~ 235 (398)
++.+.+++..|++++++.|..+++.........+..+++.+|++ ++++|+++.++.++...+..+++++..|.+++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344567889999999999999999999999999999999764 6799999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 015932 236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGW 315 (398)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 315 (398)
|++|+|++++..+++.++...++++.+++++++++++..+|++|+++.+.+.+++++.+++.++.+++.+..+++++.||
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 385 (460)
T 3mkt_A 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385 (460)
T ss_dssp HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhHHHHHHHh----cC-CCcchHhHHHHHHHHHHHHHHHHHHHhCC
Q 015932 316 QNIAAFVNLGAFYLCGIPTAAILGFW----LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTN 372 (398)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~l~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 372 (398)
++.+++.++++.|++++|+++++... ++ +|..|+|+++.+++.+..++..++++|..
T Consensus 386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999999976 56 99999999999999999888877666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=9.1e-20 Score=173.74 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=189.7
Q ss_pred HHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015932 161 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240 (398)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g~~~~ 240 (398)
.++..|++++.++|.+++++...+....|..+++++|++ +.++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 446789999999999999999999999999999998865 458899999998888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhH
Q 015932 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (398)
++.++..+.+..+....+++.+++ +.+++++..+++.|++..+.+..++++.+++.++..+.....+.+|+.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999998765 7788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchHhHHHHHHHHHHHHHHHHHHHhC
Q 015932 321 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCT 371 (398)
Q Consensus 321 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 371 (398)
..++++. ++++++++++.+. |++|+.|+++++.+++.+..+...++++++
T Consensus 164 ~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 164 VIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998 8899999999864 379999999999999999998887777654
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=41.19 E-value=51 Score=19.07 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Q 015932 122 NLGGALAIGISNWLNVTFLAIYMKFS 147 (398)
Q Consensus 122 ~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (398)
+.+..++-+..-.+..+..+++++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 33334433333333333334444443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=33.38 E-value=44 Score=18.60 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=8.7
Q ss_pred cchhHHHHHHHHHHHHHH
Q 015932 122 NLGGALAIGISNWLNVTF 139 (398)
Q Consensus 122 ~~gaa~at~i~~~~~~~~ 139 (398)
+.|+.++.+.+-.+....
T Consensus 13 IAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHH
Confidence 445555555544444433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.11 E-value=53 Score=19.00 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.0
Q ss_pred HHHHHhc
Q 015932 141 AIYMKFS 147 (398)
Q Consensus 141 ~~~~~~~ 147 (398)
.++++++
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444444
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.24 E-value=88 Score=27.40 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHH-hcCCC-------cchHhHHHHHHHHHHHHHHHHHHHhCCH
Q 015932 319 AAFVNLGAFYLCGIPTAAILGF-WLKFR-------GRGLWIGIQAGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 319 ~~~~~~~~~~~~~i~l~~~l~~-~~~~g-------~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 373 (398)
.-..++++ ++.+|+.++-+. +.+++ -.|.|++ ....++.++..+++++|++|
T Consensus 279 mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~-l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 279 MKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLV-MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHH-HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 33455555 355667666553 22221 1343433 33445555666777788777
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=23.07 E-value=4.1e+02 Score=23.84 Aligned_cols=10 Identities=0% Similarity=-0.124 Sum_probs=5.0
Q ss_pred HHHHHHhcCC
Q 015932 229 TRVSNELGAG 238 (398)
Q Consensus 229 ~~vs~~~g~~ 238 (398)
..+...+|++
T Consensus 340 ~~l~~r~~~r 349 (491)
T 4aps_A 340 AWLWTAWKKN 349 (491)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcc
Confidence 3345555544
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.14 E-value=87 Score=27.75 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhCCH
Q 015932 355 AGAFTQTLLLGIITTCTNW 373 (398)
Q Consensus 355 i~~~~~~~~~~~~~~~~~~ 373 (398)
+..++.++..+++++|++|
T Consensus 344 ~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 344 AVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3344455566677777777
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.35 E-value=3.9e+02 Score=17.55 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=7.7
Q ss_pred cchHhHHHHHHHHHHHHH
Q 015932 346 GRGLWIGIQAGAFTQTLL 363 (398)
Q Consensus 346 ~~g~~~a~~i~~~~~~~~ 363 (398)
+.++..+...+-++..++
T Consensus 10 ~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 344444444444433333
No 10
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=8.12 E-value=3.5e+02 Score=15.41 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015932 235 LGAGNVQKARVAVYAVIFMAVTETIVVSATLFASR 269 (398)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (398)
.|+.|+++=++.+...++++-..++.+.+++.+.+
T Consensus 5 hG~MD~~~hE~Ty~gFi~~~k~gt~~~~~~ll~ma 39 (43)
T 1qle_D 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLVFLA 39 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!