Query 015932
Match_columns 398
No_of_seqs 203 out of 1918
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 05:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015932.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015932hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 24.1 50 0.0036 17.4 3.5 34 234-267 3-36 (42)
2 d2iuba2 f.17.3.1 (A:286-349) M 8.3 1.7E+02 0.012 16.6 3.2 10 330-339 15-24 (64)
3 d1qled_ f.23.8.1 (D:) Bacteria 7.1 1.9E+02 0.014 15.2 4.7 32 235-266 5-36 (43)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 5.7 1.9E+02 0.014 15.9 2.2 28 9-36 2-29 (53)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.0 2.5E+02 0.018 14.3 4.4 33 239-271 7-39 (41)
6 d1u61a_ a.149.1.1 (A:) Hypothe 3.3 6.1E+02 0.045 16.4 4.8 30 223-252 94-123 (127)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.3 5.5E+02 0.04 15.7 8.7 16 166-181 71-86 (100)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 3.2 4.2E+02 0.031 16.1 2.8 16 166-181 62-77 (91)
9 d1lghb_ f.3.1.1 (B:) Light-har 3.1 4E+02 0.029 13.9 4.2 32 240-271 11-42 (43)
10 d2d5ba1 a.27.1.1 (A:349-500) M 3.0 4.7E+02 0.034 17.4 3.2 42 16-57 81-123 (152)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.05 E-value=50 Score=17.38 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=21.5
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932 234 ELGAGNVQKARVAVYAVIFMAVTETIVVSATLFA 267 (398)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
..|+-|.+.-.|.+...+++..-.++.+.+++++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777666555544444443
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.28 E-value=1.7e+02 Score=16.64 Aligned_cols=10 Identities=30% Similarity=0.341 Sum_probs=4.9
Q ss_pred hhhhHHHHHH
Q 015932 330 CGIPTAAILG 339 (398)
Q Consensus 330 ~~i~l~~~l~ 339 (398)
+.+|++++-.
T Consensus 15 iflP~t~i~g 24 (64)
T d2iuba2 15 IFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 3
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.08 E-value=1.9e+02 Score=15.16 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=19.9
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015932 235 LGAGNVQKARVAVYAVIFMAVTETIVVSATLF 266 (398)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
.|+-|.+.-.+.+...+++..-.++.+.++++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~li 36 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVLV 36 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766666655554444443
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.74 E-value=1.9e+02 Score=15.93 Aligned_cols=28 Identities=14% Similarity=-0.101 Sum_probs=17.6
Q ss_pred HHhhhCCCccchHHHHHHHHHHHHHHHH
Q 015932 9 CGQAYGAQQYQRIGTQTYTAIFCLFLVC 36 (398)
Q Consensus 9 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 36 (398)
.++.+|++..+.++....++......-+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 4677787777766666666655544433
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.03 E-value=2.5e+02 Score=14.34 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015932 239 NVQKARVAVYAVIFMAVTETIVVSATLFASRRV 271 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (398)
+-|+..+....+.+....++++.=++.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 347788888888888888877766666655554
No 6
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=3.32 E-value=6.1e+02 Score=16.38 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 015932 223 LGAAVSTRVSNELGAGNVQKARVAVYAVIF 252 (398)
Q Consensus 223 ~~~~~~~~vs~~~g~~~~~~~~~~~~~~~~ 252 (398)
.+.++-.+++..|=.++.+++++.+.+.+.
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678888899988877889999998887654
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.29 E-value=5.5e+02 Score=15.73 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHH
Q 015932 166 GEFFHFAIPSAVMICL 181 (398)
Q Consensus 166 k~~l~~~~p~~~~~~~ 181 (398)
-|+.-..+|..+-..+
T Consensus 71 LEiiWTviP~lILi~l 86 (100)
T d3dtub2 71 LEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888887764443
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.19 E-value=4.2e+02 Score=16.07 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHhhHHHHHHH
Q 015932 166 GEFFHFAIPSAVMICL 181 (398)
Q Consensus 166 k~~l~~~~p~~~~~~~ 181 (398)
.|+.-..+|..+-..+
T Consensus 62 lEi~WtiIP~iil~~i 77 (91)
T d1fftb2 62 VEAVVWTVPILIIIFL 77 (91)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHH
Confidence 5778888898764443
No 9
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.13 E-value=4e+02 Score=13.86 Aligned_cols=32 Identities=3% Similarity=-0.078 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 015932 240 VQKARVAVYAVIFMAVTETIVVSATLFASRRV 271 (398)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (398)
-++..+.+.++...-..++++.=++.+.-.|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35667777777777777777666666655443
No 10
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.02 E-value=4.7e+02 Score=17.39 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=21.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhCCCh
Q 015932 16 QQYQRIGTQTYTAIFCLFLVCFPLSFLWI-YAGKLLVLIGQDP 57 (398)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~ 57 (398)
+|.++++.++..++-..-.+++.+.-++. .+.-+...+|.++
T Consensus 81 ~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~ 123 (152)
T d2d5ba1 81 KEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123 (152)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 34555565555555544444444444422 3455566666554
Done!