BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015933
(398 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086508|emb|CBI32097.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/409 (63%), Positives = 314/409 (76%), Gaps = 15/409 (3%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 117
V A++ +ALL+QV ++HL RF+G+V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 118 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 178 SLTNTLSTASASPDFSSHHIT---------DPSLLYNPPDLNKNITEIFGKLINIYRALG 228
T S ++ + + + T D SL Y+PPDLNKNITEIFGKLINIYRALG
Sbjct: 178 ESFRTPSPENSGSNTLAEYFTISFNQVGTLDSSLPYSPPDLNKNITEIFGKLINIYRALG 237
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+DRRSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE D
Sbjct: 238 DDRRSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETD 297
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
EKVRTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PR
Sbjct: 298 EKVRTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPR 357
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
HEV++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD K
Sbjct: 358 HEVQEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGK 406
>gi|359473414|ref|XP_002266446.2| PREDICTED: DNA polymerase lambda-like [Vitis vinifera]
Length = 543
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/406 (64%), Positives = 314/406 (77%), Gaps = 13/406 (3%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 117
V A++ +ALL+QV ++HL RF+G+V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 118 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 178 ------SLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 231
S N+ S P+ + + D SL Y+PPDLNKNITEIFGKLINIYRALG+DR
Sbjct: 178 ESFRTPSPENSGSNTLGDPNKAVGTL-DSSLPYSPPDLNKNITEIFGKLINIYRALGDDR 236
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE DEKV
Sbjct: 237 RSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETDEKV 296
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
RTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PRHEV
Sbjct: 297 RTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPRHEV 356
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD K
Sbjct: 357 QEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGK 402
>gi|224108111|ref|XP_002314725.1| predicted protein [Populus trichocarpa]
gi|222863765|gb|EEF00896.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 278/407 (68%), Positives = 306/407 (75%), Gaps = 50/407 (12%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK RK +P++D GIF+GM VFLVE GVQ+RRLQIW+QKLVQMGAT EE+LSKKVTH
Sbjct: 1 MAPK--RKKSPSIDPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTH 58
Query: 61 VLAMDLEALLQQVSKQHLARFKGS---------VIRYQWLEDSLRLGEKVSEDLYRIKLD 111
V A++ +ALLQQ+ Q L RFK V+ YQWLEDSLR GEKVSED Y + +D
Sbjct: 59 VFAINSQALLQQLDGQLLKRFKPKRDFPFFCLRVLLYQWLEDSLRSGEKVSEDQYHLLVD 118
Query: 112 PEGENIADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAP 170
EGEN D+ L N NTSS E S H +KIKS DV+ F K D E LSE
Sbjct: 119 MEGENTKDKSLVLKLVNENTSSADELSPHNEKIKS---DVKKF----KSDAENKGLSEL- 170
Query: 171 NSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 230
SL Y+PPDLN++ITEIFGKLINIYRALG+D
Sbjct: 171 ------------------------------SLPYSPPDLNRSITEIFGKLINIYRALGDD 200
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RRSFSYYKAIPV+EKLPFKIESADQVK LPGIGKSMQDHIQEIVTTGKLSKLEHFE DEK
Sbjct: 201 RRSFSYYKAIPVVEKLPFKIESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEK 260
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
VRTISLFGEVWGIGPATA K YEKGHRTL+DLKNEDSLTHSQ+LGLKYFDDIKTRIPRHE
Sbjct: 261 VRTISLFGEVWGIGPATALKFYEKGHRTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHE 320
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
V++ME LLQK GEE+LP V ILCGGSYRRGKASCGDLD+VI HPD K
Sbjct: 321 VQEMELLLQKTGEEILPGVDILCGGSYRRGKASCGDLDIVITHPDGK 367
>gi|356502249|ref|XP_003519932.1| PREDICTED: DNA polymerase lambda-like [Glycine max]
Length = 534
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/397 (61%), Positives = 303/397 (76%), Gaps = 4/397 (1%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK P D +G+F+GM VFLV KGVQ+RR QIW+++LVQMGA +EE+ SK+VTH
Sbjct: 1 MAPKKK----PESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTH 56
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V AM +ALLQQ+ ++ L+RFKG V+ YQWLED L+ GE +SED+Y +KLD +GE+I ++
Sbjct: 57 VFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEK 116
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
L N TSSD + KK K STED + + ES D + S +SS
Sbjct: 117 SLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEV 176
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
++LS + SL Y+PPDLNKNITEIFGKL+NIYRALG+DRRSFSY+KAI
Sbjct: 177 DSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAI 236
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
VIEKLPFKIES DQ+ LP IGKSM+DH+QEI+TTGKLSKLEHFE DEKVRTISLFGEV
Sbjct: 237 AVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEV 296
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
WGIGP+TA KLYEKGHR+LDDL+N+DSLT++Q+LGLKYFDDI RIPRHE ++ME +LQK
Sbjct: 297 WGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQK 356
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
GE+VLP V+I+CGGSYRRGKA+CGD+D++I HPD K
Sbjct: 357 VGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGK 393
>gi|357486897|ref|XP_003613736.1| DNA polymerase beta [Medicago truncatula]
gi|355515071|gb|AES96694.1| DNA polymerase beta [Medicago truncatula]
Length = 531
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/384 (64%), Positives = 294/384 (76%), Gaps = 3/384 (0%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQV 73
+ NG+F+GM VF V KGVQ RRLQIW+Q++VQMGA +E++ SK+VTHV A+D LL +
Sbjct: 6 EQNGMFSGMVVFFVSKGVQARRLQIWKQRMVQMGAVIEDRFSKRVTHVFAVDSHTLLHEF 65
Query: 74 SKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI--ADRVLSQIQGNGNT 131
Q L+RFKGS++ YQWLEDSL+ GEK SEDLY +KLDP+GE I D L +G+
Sbjct: 66 DSQRLSRFKGSLLLYQWLEDSLKSGEKESEDLYVLKLDPQGEGINEIDTSLDPEPIDGSL 125
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
SS+ + KKIKSS+ED E +S D NA N+ SS L+ + P
Sbjct: 126 SSEPQQLQNKKIKSSSEDAEIVNLKSNEDRRENAPLSLANTA-SSHGEVEHLNCVDSRPQ 184
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
SL Y PPDLNK I EIFGKL+NIYRALGEDRRSFSYYKAI VIEKLPFKIE
Sbjct: 185 HLDSENAASSLPYCPPDLNKKIIEIFGKLVNIYRALGEDRRSFSYYKAISVIEKLPFKIE 244
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
SADQ+K LP IGKSM+DHIQEI+TTGKLSKLEHFE DEKV+TISLFGEVWGIGPATA KL
Sbjct: 245 SADQIKNLPSIGKSMEDHIQEIITTGKLSKLEHFETDEKVQTISLFGEVWGIGPATALKL 304
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
YEKGHRTLDDL+N+DSLT++Q+LGLKYFDDI+ RIPRHEV++ME++LQK G VLP V I
Sbjct: 305 YEKGHRTLDDLRNDDSLTNAQKLGLKYFDDIRHRIPRHEVQEMEQILQKVGGNVLPGVTI 364
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD 395
+CGGSYRRGKA+CGD+D+++ HPD
Sbjct: 365 ICGGSYRRGKATCGDIDIIVTHPD 388
>gi|30681747|ref|NP_172522.2| DNA polymerase lambda subunit [Arabidopsis thaliana]
gi|12053869|emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|91805767|gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|304440990|gb|ADM33939.1| DNA pol lambda [Arabidopsis thaliana]
gi|332190467|gb|AEE28588.1| DNA polymerase lambda subunit [Arabidopsis thaliana]
Length = 529
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/396 (62%), Positives = 302/396 (76%), Gaps = 11/396 (2%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+LEALL + K+ L+ F ++ YQWLEDSL GEK +EDLY +K+D E +
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPK 120
Query: 120 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
+ L I G S+ +SS +K+ + S + + ES + + +P+SP S
Sbjct: 121 KSLPAISG-----SEDQSSPQKRTRYSPDAGDFKGVESHSNTQG-----SPDSPTSCSVP 170
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
+ + S + + ++ + +Y PPDLN+NITEIFGKLINIYRALGEDRRSFSYYKA
Sbjct: 171 STSASPGEGIAETPTSPQSESTSVYKPPDLNRNITEIFGKLINIYRALGEDRRSFSYYKA 230
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEK P +IES DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGE
Sbjct: 231 IPVIEKFPTRIESVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGE 290
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLYEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV++ME+LLQ
Sbjct: 291 VWGVGPATALKLYEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQ 350
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ GEE LP V I+CGGSYRRGKA+CGDLD+V+ HPD
Sbjct: 351 RVGEETLPGVNIVCGGSYRRGKATCGDLDIVVTHPD 386
>gi|449478716|ref|XP_004155400.1| PREDICTED: DNA polymerase lambda-like, partial [Cucumis sativus]
Length = 400
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/400 (62%), Positives = 301/400 (75%), Gaps = 23/400 (5%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 118
+ A L+ALL++V LARFKG V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRD-- 118
Query: 119 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ S KK+ S + E ES GD + + L + +
Sbjct: 119 ---------------KPQQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 179 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 237
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD K
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGK 380
>gi|449435380|ref|XP_004135473.1| PREDICTED: DNA polymerase lambda-like [Cucumis sativus]
Length = 521
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/400 (62%), Positives = 301/400 (75%), Gaps = 23/400 (5%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 118
+ A L+ALL++V LARFKG V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRDKP 120
Query: 119 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ S KK+ S + E ES GD + + L + +
Sbjct: 121 -----------------QQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 179 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 237
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD K
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGK 380
>gi|297843866|ref|XP_002889814.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
gi|297335656|gb|EFH66073.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
Length = 529
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/400 (62%), Positives = 299/400 (74%), Gaps = 19/400 (4%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVE-EKLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RR QIW+QKLVQMGA +E ++++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRFQIWKQKLVQMGAVIEKDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+L+ALL + K+ L+ F+G ++ YQWLEDSL GEK +EDLY + +D E +
Sbjct: 61 HVLAMNLDALLDKFGKERLSHFRGRLMLYQWLEDSLTAGEKANEDLYALNIDSEEVEEPN 120
Query: 120 RVLSQIQGNGNTSSDGESSH-RKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMS 175
+ L I G S D S H R + D + +++S T ++P S P +
Sbjct: 121 KSLPAISG----SEDLPSPHKRTRYLPDAADFKGVESQSN----TQGSLDSPTSCSVPST 172
Query: 176 SESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 235
S S + ++ SP S + Y PPDLN+NITEIFGKLINIYRALGEDRRSFS
Sbjct: 173 SASPGDGIAETPTSPQSESTSV------YKPPDLNRNITEIFGKLINIYRALGEDRRSFS 226
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
YYKAIPVIEK P KIES DQ+K LPGIGKSM+DHIQEIVTTGKLSKLEHFE DEKVRTIS
Sbjct: 227 YYKAIPVIEKFPTKIESIDQLKHLPGIGKSMRDHIQEIVTTGKLSKLEHFETDEKVRTIS 286
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME 355
LFGEVWGIGPATA KLY+KGHRTL+DLKNEDSLTH+QRLGLKYFDDI+TRI RHEV++ME
Sbjct: 287 LFGEVWGIGPATALKLYDKGHRTLEDLKNEDSLTHAQRLGLKYFDDIRTRILRHEVQEME 346
Query: 356 RLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+LLQ+ GEE LP V I+CGGSYRRGKA+CGDLD+VI HPD
Sbjct: 347 QLLQRVGEETLPGVNIVCGGSYRRGKATCGDLDIVITHPD 386
>gi|115467296|ref|NP_001057247.1| Os06g0237200 [Oryza sativa Japonica Group]
gi|113595287|dbj|BAF19161.1| Os06g0237200, partial [Oryza sativa Japonica Group]
Length = 539
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/396 (55%), Positives = 286/396 (72%), Gaps = 18/396 (4%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 6 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 65
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLD------PEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I + EG V
Sbjct: 66 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 125
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 126 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 180
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 181 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 240
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 241 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 300
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 301 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 360
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD
Sbjct: 361 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPD 396
>gi|51535806|dbj|BAD37891.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 549
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/396 (55%), Positives = 286/396 (72%), Gaps = 18/396 (4%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 75
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLD------PEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I + EG V
Sbjct: 76 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 135
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 136 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 190
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 191 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 250
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 251 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 310
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 311 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 370
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD
Sbjct: 371 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPD 406
>gi|47232548|dbj|BAD18976.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 552
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/396 (55%), Positives = 286/396 (72%), Gaps = 18/396 (4%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 19 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 78
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLD------PEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I + EG V
Sbjct: 79 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 138
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 139 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 193
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 194 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 253
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 254 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 313
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 314 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 373
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD
Sbjct: 374 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPD 409
>gi|357124685|ref|XP_003564028.1| PREDICTED: DNA polymerase lambda-like [Brachypodium distachyon]
Length = 552
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/419 (53%), Positives = 288/419 (68%), Gaps = 34/419 (8%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--- 57
MAPK + PA D GIF G+ F V VQ+ RL++W+QKLVQMG V+EK++
Sbjct: 1 MAPKRRKPARPASDPEGIFGGVSAFFVPHSVQSHRLEVWKQKLVQMGGRVQEKVANAKGV 60
Query: 58 -VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN 116
V HVLA D +ALL+++ L RF+GSV+ ++W+E+ L+ GE++ E + I + E +
Sbjct: 61 TVNHVLAADAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPEHKFTINYEEEFKP 120
Query: 117 IADRVLSQIQGNGNTSSDGESSHRKKIKSSTED-----------------VEHFQAESKG 159
+ G G+T G S K+ K S+ED V Q S
Sbjct: 121 ------KKAAGTGHT---GASRPPKRSKMSSEDHGKRKETIVQDGEKELAVGEHQDASTH 171
Query: 160 DVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHIT--DPSLLYNPPDLNKNITEI 216
E + + + + + S+S + +T+ T + F + +P+ Y PPDLN+NITE+
Sbjct: 172 AREGSGVDKGRSQYVCSQSSSGDTMDTIGSHGTFDIEEASSVEPTT-YAPPDLNRNITEV 230
Query: 217 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276
FGKLINIYRALG+ RRSFSYYKAIPVIEKLPFK+ESADQVK LP IGKS++DHI EIVTT
Sbjct: 231 FGKLINIYRALGDGRRSFSYYKAIPVIEKLPFKVESADQVKDLPAIGKSLKDHINEIVTT 290
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
GKLSKLEHFE DEK RT+SLFGEVWG+GPATA KLY+KGHRTL+DL+ +DSLT++QR GL
Sbjct: 291 GKLSKLEHFENDEKARTVSLFGEVWGVGPATALKLYDKGHRTLEDLRKDDSLTYAQRTGL 350
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
K+FDDIK RIPRHEV +ME+LLQ G+++LP V I+CGGSYRRGKASCGD+D+VI HPD
Sbjct: 351 KFFDDIKQRIPRHEVSEMEKLLQDVGKDILPGVTIVCGGSYRRGKASCGDMDIVITHPD 409
>gi|326523649|dbj|BAJ92995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/419 (53%), Positives = 284/419 (67%), Gaps = 34/419 (8%)
Query: 1 MAPKTTRKPT-PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---- 55
MAPK RKP P D GIF G+ F V GVQ+RRL++W+QKLVQMG +E+K +
Sbjct: 1 MAPK--RKPAEPPRDPEGIFRGVSAFFVPHGVQSRRLEVWKQKLVQMGGRLEKKDADAKG 58
Query: 56 KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGE 115
++ HVLA D +ALL+++ L RF GSV+ + WLE+ L+ GE++ E + I + E +
Sbjct: 59 ARINHVLAADAKALLRELGADWLHRFTGSVVSFDWLEECLKSGERLPEHKFAINYEEEFK 118
Query: 116 NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKG------------DVET 163
+ G G TS S K+ K S++D E+ + D T
Sbjct: 119 P------KKAAGAGGTSVSNPS---KRSKISSQDPENRKGTGGQGVKEEVPTREHRDAST 169
Query: 164 NA-----LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
+A + + P S++ + S D +P+ Y PPDLN+NITEIFG
Sbjct: 170 HAHHGSGVEKGPGQFAHSQTSSGDTKDTVGSLDVEEASSGEPTT-YAPPDLNRNITEIFG 228
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
KLINIYRA+G+DRRSFSYYKAIPVIEKLPFKIES DQVK LP IGKS++DHI EI TTGK
Sbjct: 229 KLINIYRAMGDDRRSFSYYKAIPVIEKLPFKIESGDQVKNLPAIGKSLKDHINEIATTGK 288
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
LSKLEHFE DEKVR +SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT++QR GLK+
Sbjct: 289 LSKLEHFENDEKVRAVSLFGEVWGVGPATALKLYDKGHRTLDDLRKDDSLTYAQRTGLKF 348
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
FDDI+ RIPRHEV +ME+LLQ+ G+++LP V I+CGGSYRRGK+SCGD+D+VI H D K
Sbjct: 349 FDDIRQRIPRHEVSEMEKLLQEVGKDILPGVTIVCGGSYRRGKSSCGDMDIVITHDDGK 407
>gi|222635274|gb|EEE65406.1| hypothetical protein OsJ_20743 [Oryza sativa Japonica Group]
Length = 578
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/425 (52%), Positives = 286/425 (67%), Gaps = 47/425 (11%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRL-----------------------------QIWRQKL 43
LD +G+F G+ F+V VQ+RRL Q+W+Q+L
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVAAPPSNPSQPPPTLSPVLRVSWLSSSVQVWKQRL 75
Query: 44 VQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLG 98
QMG V+EKL+ K VTHVLA D +ALL+++ L RF+GSV+ ++WLE+ L+ G
Sbjct: 76 AQMGGRVQEKLAAKGGGGAVTHVLAADAKALLRELDAAWLHRFRGSVVSFEWLEECLKSG 135
Query: 99 EKVSEDLYRIKLD------PEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEH 152
E++ E + I + EG VL Q SSDG + ++ + E +
Sbjct: 136 ERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKISSDGPENRKETAGGNRESRDA 194
Query: 153 FQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHITD-PSLLYNPPDLN 210
+ E + + + P++ SS+S + ++ T ++ F + + S Y PPDLN
Sbjct: 195 IAHPN----EDSDVVKGPSTCTSSQSASGDSKETIASQNAFKAEEASSGESSTYAPPDLN 250
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVK LP IGKS++DHI
Sbjct: 251 RNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKDLPAIGKSLKDHI 310
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 330
EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT
Sbjct: 311 NEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPATALKLYDKGHRTLDDLQKDDSLTS 370
Query: 331 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP VII+CGGSYRRGK+SCGD+D++
Sbjct: 371 AQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPGVIIVCGGSYRRGKSSCGDMDII 430
Query: 391 IMHPD 395
I HPD
Sbjct: 431 ITHPD 435
>gi|242095276|ref|XP_002438128.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
gi|241916351|gb|EER89495.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
Length = 498
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/421 (54%), Positives = 287/421 (68%), Gaps = 38/421 (9%)
Query: 1 MAPKTTRKPTPAL--DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK- 57
MAPK RKP A D +GIF G+ F+V GVQ RRL++W+Q+LVQMG V EK K
Sbjct: 1 MAPK--RKPAVAAERDPDGIFRGVSAFIVPHGVQARRLEVWKQRLVQMGGRVVEKPPKGE 58
Query: 58 ---VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEG 114
HVLAMD +ALL+++ L RF+GSV+ ++W+E+ L+ GE++ + I + E
Sbjct: 59 LAGFNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPNHKFAINYEEE- 117
Query: 115 ENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGD-------------- 160
L G T + G K+ K S+E Q S GD
Sbjct: 118 -------LKPKNAVG-TENLGALQPAKRTKMSSEYPGDCQRVSGGDRESELAAAGSPGAS 169
Query: 161 ---VETNALSEAPNSPMSSESLTNTL-STASASPDFSSHHITD--PSLLYNPPDLNKNIT 214
VE ++ + PN SS+S + T + F + PS+ Y P DLN+NIT
Sbjct: 170 AHMVEGSSAGKQPNQYASSQSSSADSKDTVGSHGTFGIEEASSGGPSI-YAPADLNRNIT 228
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIV
Sbjct: 229 KIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIV 288
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
TTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+
Sbjct: 289 TTGKLSKLEHFENDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLRKDESLTNAQRI 348
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLK+FDDIK RIPRHEV +ME LL+ G ++LP VII+CGGSYRRGKASCGD+D++I HP
Sbjct: 349 GLKFFDDIKQRIPRHEVSEMEELLKDVGTDILPGVIIVCGGSYRRGKASCGDMDIIITHP 408
Query: 395 D 395
D
Sbjct: 409 D 409
>gi|413952550|gb|AFW85199.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 552
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/409 (54%), Positives = 280/409 (68%), Gaps = 40/409 (9%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEAL 69
D +GIF G+ F+V GVQ RRL +W+Q+LVQMG V EK +K V HVLAMD +AL
Sbjct: 14 DPDGIFRGVSAFIVPNGVQARRLVVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKAL 73
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG 129
L+++ L RF+GSV+ ++W+E+ L+ GE++ ++ ++ E E + G
Sbjct: 74 LRELDAAWLHRFRGSVVSFEWIEECLKSGERLP--IHNFAINYEKEFKPKNAVC----TG 127
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS 189
N + S K+ K S+E Q S GD E + P P +S + S+A
Sbjct: 128 NLVA---SRPSKRTKMSSEYPGDHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQ 181
Query: 190 PD---------------FSSHHI--------TDPSLLYNPPDLNKNITEIFGKLINIYRA 226
P+ SH PS+ Y P DLNKNIT+IFG+LI+IYRA
Sbjct: 182 PNQYASSQSSSADSKDTIGSHGTFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRA 240
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
LG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE
Sbjct: 241 LGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFE 300
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+GLK+FDDIK RI
Sbjct: 301 NDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLQRDESLTNAQRIGLKFFDDIKQRI 360
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PRH+V +ME+LLQ G ++LP V I+CGGSYRRGKASCGD+D++I HPD
Sbjct: 361 PRHDVSEMEKLLQDVGTDILPGVTIVCGGSYRRGKASCGDMDIIITHPD 409
>gi|5091544|gb|AAD39573.1|AC007067_13 T10O24.13 [Arabidopsis thaliana]
Length = 559
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/468 (50%), Positives = 291/468 (62%), Gaps = 80/468 (17%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKG---SVIR----------------------------- 87
HVLAM+LEALL + K+ L+ F S IR
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTAVIFSTIRLIGYKFYLRIEIIQCYKFIYIGCSLQRLM 120
Query: 88 -YQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSS 146
YQWLEDSL GEK +EDLY +K+D E + + L I G S+ +SS +K+ + S
Sbjct: 121 LYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISG-----SEDQSSPQKRTRYS 175
Query: 147 TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
+ + ES + + +P+SP S + + S + + ++ + +Y P
Sbjct: 176 PDAGDFKGVESHSNTQG-----SPDSPTSCSVPSTSASPGEGIAETPTSPQSESTSVYKP 230
Query: 207 PDLNKNITEIFGKLINIYRA---------------LGEDRRSFSYYKAIPVIEKLPFKIE 251
PDLN+NITEIFGKLINIYR LGEDRRSFSYYKAIPVIEK P +IE
Sbjct: 231 PDLNRNITEIFGKLINIYRGTISGVCILDYSLIVTLGEDRRSFSYYKAIPVIEKFPTRIE 290
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KL
Sbjct: 291 SVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGVGPATALKL 350
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME------RLLQKAGEEV 365
YEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV + L + +
Sbjct: 351 YEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVRFLNFNVNFVCLYYPSCNFL 410
Query: 366 LPEV-IILC-----GGSYR---------RGKASCGDLDVVIMHPDRKR 398
L + + C YR RGKA+CGDLD+V+ HPD +R
Sbjct: 411 LIFLHFLYCRCKRWNNFYRESARKLCLARGKATCGDLDIVVTHPDGQR 458
>gi|218197869|gb|EEC80296.1| hypothetical protein OsI_22314 [Oryza sativa Indica Group]
Length = 1863
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 189/327 (57%), Positives = 236/327 (72%), Gaps = 20/327 (6%)
Query: 81 FKG-SVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRVLSQIQGNGNTSS 133
FK SV+ ++WLE+ L+ GE++ E + I K EG VL Q SS
Sbjct: 1402 FKAESVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKISS 1460
Query: 134 DGESSHRKKI---KSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASAS 189
DG S ++ + S + + H +S + + PN+ SS+S + ++ T ++
Sbjct: 1461 DGPESRKETAGGNRESRDAIAHPNEDSD-------VVKGPNTYTSSQSASGDSKETIASQ 1513
Query: 190 PDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 1514 NAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPF 1573
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
KIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPATA
Sbjct: 1574 KIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPATA 1633
Query: 309 QKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP
Sbjct: 1634 LKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPG 1693
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPD 395
VII+CGGSYRRGK+SCGD+D++I HPD
Sbjct: 1694 VIIVCGGSYRRGKSSCGDMDIIITHPD 1720
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 17/106 (16%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKK-----VTHVLAMDLE 67
D +G+F G+ F+V W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 1227 DPDGMFRGVSAFVV-----------WKQRLAQMGGRVVQEKLAAKGGGGAVTHVLAADAK 1275
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE 113
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I + E
Sbjct: 1276 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEE 1321
>gi|168048054|ref|XP_001776483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672209|gb|EDQ58750.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 535
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/379 (44%), Positives = 244/379 (64%), Gaps = 17/379 (4%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F G+ + VE G+Q RRLQIW+QKL+Q+G VE+ S+ ++HV A +E + + ++ L
Sbjct: 29 FRGIAAYFVETGIQPRRLQIWKQKLLQLGGVVEDHWSEHLSHVFAASVETVTDKCGRRKL 88
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 138
+V++Y W+ED L+ G+ + D Y + + PE +++ N SS
Sbjct: 89 KNILQNVLKYTWIEDCLKAGKCLPIDSYVLDILPENRSVSRNSTENSGLRDNAPEKAVSS 148
Query: 139 HRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 197
+K+ SS + + Q A S+ D + +EA SS L A P+
Sbjct: 149 SLQKLTSSERGLHNTQGASSEEDCDMKNEAEA-----SSAELAPARDAAPGPPEAG---- 199
Query: 198 TDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
Y PP+LN +IT F ++ +IY+ ALG+DRR+FSYYKA+ V+EK+PFKI S +Q+
Sbjct: 200 ------YTPPNLNAHITGPFSEIKDIYKEALGDDRRAFSYYKALSVLEKVPFKITSVNQI 253
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
KG P IGKS+ + I EI++TG+ SKLEH + D KVR ++LFG VWGIGPATAQ+LY+KG
Sbjct: 254 KGFPTIGKSLMESIHEILSTGRFSKLEHLKNDNKVRVLALFGSVWGIGPATAQRLYDKGL 313
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
RTL++LK +++LT QR+GL + +DI T+IPRHE+++ME ++QK+G E+ P + I+CGGS
Sbjct: 314 RTLEELKTDNTLTPPQRIGLMFHNDIITKIPRHEIKEMEAIVQKSGSELCPGISIMCGGS 373
Query: 377 YRRGKASCGDLDVVIMHPD 395
YRRGKA GD+D VI HPD
Sbjct: 374 YRRGKALSGDMDFVITHPD 392
>gi|255558390|ref|XP_002520222.1| DNA polymerase lambda, putative [Ricinus communis]
gi|223540714|gb|EEF42277.1| DNA polymerase lambda, putative [Ricinus communis]
Length = 314
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 222/296 (75%), Gaps = 10/296 (3%)
Query: 1 MAPKTTRK-PTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVT 59
MAPK T K TP+ D NG+F+GM VFLVE GVQ+RRLQIW+QKLVQMGAT+E +LSKKVT
Sbjct: 23 MAPKATAKNKTPSRDPNGMFSGMVVFLVENGVQSRRLQIWKQKLVQMGATIETRLSKKVT 82
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+ ALLQQ+ K+ L R K V+ YQWLEDSLRLG+KVSE+ Y +++D E ++
Sbjct: 83 HVLAMNSNALLQQLDKERLQRLKVKVLVYQWLEDSLRLGKKVSEETYNVEVDLEEQSNKK 142
Query: 120 RVLSQIQGNGNTSSDGESSHR-KKIKSST-EDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ L +GN SS E S R KK++SS+ ED ++ E + NAL E PNSP +S
Sbjct: 143 QSLVGESTDGNASSGDEPSPRNKKVRSSSLEDNKNKPGE-----DDNALIEEPNSPSASS 197
Query: 178 SLTNTLSTASA--SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 235
++ + ++ S+ DPS Y PPDLN+NITEIFGKLINIYRALG+DRRSFS
Sbjct: 198 DSSDLTLSRASIGMKTPSNSPSNDPSSAYCPPDLNRNITEIFGKLINIYRALGDDRRSFS 257
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
YYKAIPV EKLPFKIESADQVK LPGIGKS+QD+IQEIVTTGKLSKLEHFE DEKV
Sbjct: 258 YYKAIPVTEKLPFKIESADQVKNLPGIGKSLQDNIQEIVTTGKLSKLEHFETDEKV 313
>gi|297849654|ref|XP_002892708.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338550|gb|EFH68967.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 150/182 (82%), Positives = 167/182 (91%), Gaps = 1/182 (0%)
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
EIFGKLINIYRALGEDRRSFSYYKAIP+IEK P +IES DQ+K PGIGK+M+DHIQEIV
Sbjct: 6 EIFGKLINIYRALGEDRRSFSYYKAIPIIEKFPTRIESVDQLKHFPGIGKAMRDHIQEIV 65
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
TTGKLSKLEHFE DEKVRTISLFGEVWGI PATA KLYEKGHRTL+DLKNEDSLTH+QRL
Sbjct: 66 TTGKLSKLEHFETDEKVRTISLFGEVWGISPATALKLYEKGHRTLEDLKNEDSLTHAQRL 125
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG-DLDVVIMH 393
GLKYFDDI+TRIPRHEV+++E+LLQ+ GEE LP V I+CGGSYRRGKA+C +LD+VI H
Sbjct: 126 GLKYFDDIRTRIPRHEVQEVEQLLQRVGEETLPGVNIVCGGSYRRGKATCTYNLDIVITH 185
Query: 394 PD 395
PD
Sbjct: 186 PD 187
>gi|302763783|ref|XP_002965313.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
gi|300167546|gb|EFJ34151.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
Length = 340
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 155/195 (79%), Gaps = 3/195 (1%)
Query: 204 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S DQVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVDQVKNAPSI 60
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII--LCGGSYRRG 380
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P V I +CGGSYRRG
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGVYISVVCGGSYRRG 180
Query: 381 KASCGDLDVVIMHPD 395
K+ GD+D+++ H D
Sbjct: 181 KSLVGDMDMIVTHSD 195
>gi|302790790|ref|XP_002977162.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
gi|300155138|gb|EFJ21771.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
Length = 338
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/193 (58%), Positives = 154/193 (79%), Gaps = 1/193 (0%)
Query: 204 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S QVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVYQVKNAPSI 60
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P + ++CGGSYRRGK+
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGISVVCGGSYRRGKS 180
Query: 383 SCGDLDVVIMHPD 395
GD+D+++ H D
Sbjct: 181 LVGDMDMIVTHSD 193
>gi|413952551|gb|AFW85200.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 272
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 171/282 (60%), Gaps = 40/282 (14%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL+++ L RF+GSV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 92 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 151
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 196
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 197 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|293334963|ref|NP_001169410.1| uncharacterized protein LOC100383279 [Zea mays]
gi|224029181|gb|ACN33666.1| unknown [Zea mays]
Length = 272
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 171/282 (60%), Gaps = 40/282 (14%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL+++ L RF+GSV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGEPAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 92 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 151
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 196
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 197 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|348532763|ref|XP_003453875.1| PREDICTED: DNA polymerase lambda-like [Oreochromis niloticus]
Length = 564
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 205/396 (51%), Gaps = 18/396 (4%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ IF G+ V+L+ G+ N R QI+++++ Q G E LS VTHV+ MD E L+
Sbjct: 38 TGNIFNGVTVYLLPAGIGNARCQIFQRQIQQNGGRTESSLSPGVTHVVVDDNMDSERALR 97
Query: 72 QVSKQHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQ 126
+ K +++ WL + +L + S L K D E E I L+ I+
Sbjct: 98 LL-KVDCMPSGVQLVKCTWLSLCISGKQLLDIASYSLLSPKSDSETKHEEIKKESLN-IK 155
Query: 127 GNGNTS----SDGESSHRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTN 181
T +D E + + S E+V + A S+ D+E + P SL+
Sbjct: 156 PAAETVIEPVTDQEENTEMTVPDSKEEVRGEEDAVSQSDLEALITGQHPKEETPGPSLSL 215
Query: 182 TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIP 241
TA+ P S + S + NK+IT+ L Y G+ R+ Y KA+
Sbjct: 216 GPDTAAQKP-VSGKWVCAQSSQSKSNNFNKHITDKLELLAKAYTHQGDKWRALGYSKAVN 274
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
++ I S + +PGIGK M D I+EI+ +G L KL+H E V + LF +W
Sbjct: 275 ALKSYHKPITSYQEACQIPGIGKRMADKIEEIMESGHLRKLDHI--GEAVPVLELFVNIW 332
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
G G TAQ Y++G RTLDD++ + LT++Q++GLK+++D R+PR E +E++++ A
Sbjct: 333 GAGTKTAQLWYQQGFRTLDDIRTKAHLTNTQKIGLKHYNDFLDRMPREEAGAIEKVVRDA 392
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + P ++ + GSYRRGKA+CGD+DV+I HPD K
Sbjct: 393 AQAIDPGLVAMACGSYRRGKATCGDVDVLISHPDGK 428
>gi|327279073|ref|XP_003224283.1| PREDICTED: DNA polymerase lambda-like [Anolis carolinensis]
Length = 575
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 206/409 (50%), Gaps = 41/409 (10%)
Query: 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQV 73
G + +++++ GV R +I+R++++Q G +V ++S +VTHV+ MD E + +
Sbjct: 39 GWMEPITIYVLQAGVGQARAEIFRKQILQNGGSVCSQISPEVTHVIVDEGMDCERAFRLL 98
Query: 74 SKQHL--------ARFKGSVIRYQWLED----SLRLGEKV----------SEDLYRIKLD 111
L A + S I Q L D SL + EK S+ L + +
Sbjct: 99 RLTKLPKGLQLVKASWLSSCISAQQLLDTTGYSLFIPEKYMDEEGHSKKQSQYLDKKTIH 158
Query: 112 PEGENIADRVLSQIQGNGNTS-SDGESSHRKKIKSSTEDVEHFQAE----SKGDVETNAL 166
P+ EN + ++ Q N SD + S +K K D E + E + G++E
Sbjct: 159 PQIENAVLELKAEPQSGANVPFSDVDPSGEQKDKEVISDDEGMEEEDCMVTLGELEALKS 218
Query: 167 SEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 226
+ PN NT S S + + S + N++ITE G L Y
Sbjct: 219 GQNPN---------NTFSGGSPVVPPTGKWVCAQSSESKKMNHNQSITEKLGLLEKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ RS Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRSLGYSKAINALKSYHKPVTSYQEACKIPGIGKKMAEKIMEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + +F +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+
Sbjct: 329 -SESVSALEVFSNIWGAGVKTAQMWYQQGFRTLDDVRTKASLTRQQAIGLKHYEDFVERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +++A + + P ++ + GS+RRGK++CGD+DV++ HPD
Sbjct: 388 PREEAAEIEQTVREAAQSIQPGLVCVACGSFRRGKSTCGDVDVLVTHPD 436
>gi|405955500|gb|EKC22593.1| DNA polymerase lambda [Crassostrea gigas]
Length = 208
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 120/178 (67%)
Query: 220 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 279
++ Y++ + R+F Y KAI V+ K P +I S ++ + LPG+G + D I EI +G+L
Sbjct: 1 MVKKYKSTSDQWRAFGYQKAIQVLRKHPTQISSWEEARALPGVGTRLADKIWEIAESGEL 60
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 339
KL F D+ ++ I LF VWG G TA++ +++G RTLDDL+ + LTH Q++GLK++
Sbjct: 61 RKLNEFNADKDIKVIELFTNVWGAGAHTARQWFQQGFRTLDDLRTKAKLTHQQKIGLKHY 120
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+DI R+PR E +E+++++A E + P VI C GSYRRGK +CGD+DV++ HPD K
Sbjct: 121 EDILDRMPRTEAAAIEQVVREAAEFLAPGVIAQCCGSYRRGKPTCGDVDVLLTHPDGK 178
>gi|410918281|ref|XP_003972614.1| PREDICTED: DNA polymerase lambda-like [Takifugu rubripes]
Length = 565
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 203/398 (51%), Gaps = 21/398 (5%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ FAG+ +++ G+ N R QI+++++ Q G E LS +THV+ MD++ ++
Sbjct: 38 TGNTFAGVTAYVLPAGIGNARHQIFQRQIKQNGGQTENALSPGITHVIVDDNMDVDRAVR 97
Query: 72 QVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGENIADRV-----LSQI 125
+ K +++ WL S+ + EK D+ R L P E+ R + +
Sbjct: 98 LL-KVPCVPPGVHLVKCTWL--SMCISEKKLLDVGRYSLLSPMRESETGREDVPCEKASV 154
Query: 126 QGNGNTSSD--GESSHRKKIKSSTEDVEHFQAE----SKGDVETNALSEAPNSPMSSESL 179
+ T+SD + + + I + + + Q E S+ D+E + P + +
Sbjct: 155 ENTLETASDRPDQVTQEEPINVTEPESKAVQGEEDLVSQNDLEALMSGQHPKEKTTVSNH 214
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
L A+A + S + NK+IT+ L Y G+ R+ Y KA
Sbjct: 215 GPDLE-AAAQQVVPGKWVCAQSSQSKSNNFNKHITDKLEILAKAYTHQGDKWRALGYSKA 273
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
+ ++ + S + +PGIGK M D I EI+ +G L KL+H E V + LF
Sbjct: 274 VNALKSHHKPVTSYQEACQIPGIGKRMADKIDEIMESGHLRKLDHI--GEAVPVLELFTN 331
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+WG G TAQ Y++G RTL+D++ + L+ +Q++GLK++DD R+PR E +E++++
Sbjct: 332 IWGAGAKTAQLWYQQGFRTLEDIRTKAHLSSTQKIGLKHYDDFLDRMPREEAAAIEKVVR 391
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
A V P ++++ GSYRRGKA+CGD+DV+I HPD K
Sbjct: 392 DAALAVDPHLVVMACGSYRRGKATCGDVDVLISHPDGK 429
>gi|154147652|ref|NP_001093716.1| DNA-directed DNA polymerase lambda [Xenopus (Silurana) tropicalis]
gi|134023891|gb|AAI35822.1| poll protein [Xenopus (Silurana) tropicalis]
Length = 577
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 213/422 (50%), Gaps = 52/422 (12%)
Query: 14 DSNGIF-AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEAL 69
D +GIF G+ +++ G+ R +I++++++Q G V + S +VTH++ MD +
Sbjct: 34 DIHGIFFEGVHAHILQAGIGLARSEIFQKQIIQNGGQVASQFSSEVTHIIVDEKMDCDRA 93
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLS-QIQGN 128
+ + + ++ +++ WL ++ + V+ YRI I DR L + Q
Sbjct: 94 FRVLKLEKISHHV-QLVKSAWLSLCIKEKQMVNTAGYRI-------FIPDRYLDLKDQAE 145
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHF--QAESKGDVETNALSEAP--------NSPMSSES 178
S + + + RK+ +++ H + G+ +T +S+ P + S +
Sbjct: 146 KEQSCETKRNDRKQ----HDELPHAPDKLNQAGNPQTQHVSDLPLLNYSNTSKTQNSDDD 201
Query: 179 LTNTLSTASASPDFS---SHHITDPSLL--YNPPD------------------LNKNITE 215
+++T T D S DP+ + + P+ N+ IT+
Sbjct: 202 VSDTEDTGVTQGDLDALISGQRPDPTTVKSHRVPNTVTGKWVCAHSSESKKTNYNQFITD 261
Query: 216 IFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT 275
L Y G+ RS Y KAI ++ + S ++ +PGIGK M + I+EI+
Sbjct: 262 KLEVLAKAYSVQGDRWRSLGYSKAINALKSYHKPVTSCEEAASIPGIGKKMAEKIEEILD 321
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 335
+G L KL+H + V + +F +WG G TAQ Y++G RTLDD++ + +LT Q +G
Sbjct: 322 SGHLRKLDHIS--DSVAVLEIFSNIWGAGVKTAQSWYQQGFRTLDDIRTKGNLTTQQAIG 379
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LK++DD R+PR E ++E+ +++A V PE+I + GS+RRGKA+CGD+DV++ HPD
Sbjct: 380 LKHYDDFLDRMPRDEAGKIEQTVREAAHAVNPELICVACGSFRRGKATCGDVDVLVTHPD 439
Query: 396 RK 397
K
Sbjct: 440 GK 441
>gi|73998286|ref|XP_850651.1| PREDICTED: DNA polymerase lambda isoform 2 [Canis lupus familiaris]
Length = 576
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 194/412 (47%), Gaps = 50/412 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + +TH++ MD E L+ V
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICAAHASGLTHIVVDEGMDGERALRLVGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL L+ G V + I + + Q+ S
Sbjct: 101 SQLPQ-GAQLVKSTWLSLCLQEGRLVDTAGFSICIPSRYPGLQ----PQLSKADQEFSAP 155
Query: 136 ESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
SH +K++ TE+ QA+ D ET+ E S E+L
Sbjct: 156 PGSHEALLKTALTPPRSATRPVSPPQRTEEAPSTQAQLGSDAETSDGEETQVSAADLEAL 215
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNK----------------NITEIFGKLINI 223
S +S+H D P L+K +ITE L
Sbjct: 216 I--------SGHYSTHPEGDDDPRPAPKGLDKWVCAQPSSQKAVNHNPHITEKLEVLAKA 267
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+
Sbjct: 268 YSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLD 327
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
H E V + LF +WG G TAQ Y++G+RTL+D++N+ SLT Q +GLK++DD
Sbjct: 328 HI--SESVPILELFSNIWGAGTKTAQMWYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFL 385
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
RIPR E ++E+ ++K+ + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 386 ERIPREEATEIEQTVRKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPD 437
>gi|363735532|ref|XP_001232209.2| PREDICTED: DNA polymerase lambda [Gallus gallus]
Length = 543
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 202/397 (50%), Gaps = 31/397 (7%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL-A 79
++++ G+ R +I+ +++VQ G V +L +VTHV+ MD + + + L +
Sbjct: 14 AYVLQAGIGQARAEIFHKQIVQNGGCVHNRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 73
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENIADRVLSQIQGNGNTSSDG 135
R + +++ WL D +R + ++ Y + + EGE + S+ + S
Sbjct: 74 RLQ--LVKASWLSDCIRDQKLLNTTGYSVFIPRRYREEGEQQQQLLGSEEIRSSTEESTA 131
Query: 136 ESSHRKKIKSSTED-----VEHFQAESKGDVETNALSEAPNSPMSSESL----------- 179
E + + ++ S++ +H +E D E + +A + E+L
Sbjct: 132 EPNAKAQLGDSSQQNLDSLAQHQPSEKVYDDEDSEGEDASVTQGDLEALISGHYPVKLSE 191
Query: 180 -TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
T+ S+A A P +S + S + N+ ITE L Y G+ R+ Y K
Sbjct: 192 ETSDSSSAVAQP--ASKWVCAQSSNSKKENHNQCITEKLEVLAKAYSVQGDKWRALGYAK 249
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + LF
Sbjct: 250 AINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLELFS 307
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++E+ +
Sbjct: 308 NIWGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEIEQTV 367
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 368 RQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPD 404
>gi|449505804|ref|XP_002192856.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Taeniopygia
guttata]
Length = 503
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 198/399 (49%), Gaps = 35/399 (8%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHLAR 80
++++ G+ R +I+R+++VQ G V +LS +VTHV+ MD E + + L R
Sbjct: 46 AYVLQAGIGQTRAEIFRRQIVQNGGVVHRQLSSEVTHVIVAEDMDCERAFRLLRLTKL-R 104
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN-----IADRVLSQIQGNGNTSSDG 135
+++ WL +R + +S Y + + N + LS + N N +S
Sbjct: 105 PGLQLVKAAWLSACIRDQKLLSTAGYGVFIPHRYANATLPCLPAFPLSXTEQNYNLTSAQ 164
Query: 136 E----------SSHRKKIKSSTEDVEHFQAE---------SKGDVETNALSEAPNSPMSS 176
+ K STE ++ E ++GD+E AL SS
Sbjct: 165 NLGLQLLAAPPPAEEGAAKPSTESQKYSDDEDSEGEDAGVTQGDLE--ALISGHYPVKSS 222
Query: 177 ESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSY 236
E ++++ T + P S + S + N+ ITE L Y G+ R+ Y
Sbjct: 223 EEISDSSYTVAQPP---SKWVCAQSSNTKKENHNQCITEKLEVLAKAYSVQGDKWRALGY 279
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 280 SKAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLEL 337
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y++G RTLDD++ + +LT Q +GLK++ D R+PR E ++E+
Sbjct: 338 FSNIWGAGVKTAQMWYQQGFRTLDDIRTKATLTSQQAVGLKHYTDFLERMPREEAAEIEQ 397
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 398 TVRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPD 436
>gi|47086063|ref|NP_998408.1| DNA polymerase lambda [Danio rerio]
gi|41107585|gb|AAH65469.1| Polymerase (DNA directed), lambda [Danio rerio]
Length = 566
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 197/408 (48%), Gaps = 19/408 (4%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP + R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPSKRTPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI 117
V+ ++D + L+ + L +I+ WL + + + Y ++ PE +
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPS-AVHLIKCTWLSACISEKRLLDTEDYSLR-PPESPTV 143
Query: 118 ADRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALS 167
A S IQ ++ D H ++ + + E G V N L
Sbjct: 144 AAAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLE 202
Query: 168 EAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL 227
+ SES + +++ P + + NK++T+ L Y
Sbjct: 203 ALISGVHPSESNQDQKQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHT 262
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 263 GDKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI-- 320
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+P
Sbjct: 321 GEEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMP 380
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD
Sbjct: 381 RSEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPD 428
>gi|33416901|gb|AAH55597.1| Polymerase (DNA directed), lambda [Danio rerio]
gi|197247243|gb|AAI65409.1| Poll protein [Danio rerio]
Length = 566
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 196/408 (48%), Gaps = 19/408 (4%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPFKRSPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI 117
V+ ++D + L+ + L +I+ WL + + + Y + L PE +
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPS-AVHLIKCTWLSACISEKRLLDTEDYSL-LPPESPTV 143
Query: 118 ADRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALS 167
A S IQ ++ D H ++ + + E G V N L
Sbjct: 144 AAAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLE 202
Query: 168 EAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL 227
+ SES + +++ P + + NK++T+ L Y
Sbjct: 203 ALISGVHPSESNQDQEQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHT 262
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 263 GDKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI-- 320
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+P
Sbjct: 321 GEEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMP 380
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD
Sbjct: 381 RSEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPD 428
>gi|300796521|ref|NP_001179488.1| DNA polymerase lambda [Bos taurus]
gi|296472781|tpg|DAA14896.1| TPA: polymerase (DNA directed), lambda [Bos taurus]
Length = 575
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 196/417 (47%), Gaps = 61/417 (14%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG- 129
L +++ WL L RL + ++ K LD + AD+V G G
Sbjct: 101 PQLPP-GAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQVSFTPPGAGE 159
Query: 130 -------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESK 158
TSSDGE+S ++ + S D+E A
Sbjct: 160 AQPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALIS 216
Query: 159 GDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
G T + SP + E L + +S +H N +ITE
Sbjct: 217 GRYPTPFEGDGEPSP-APEGLDKWVCAQPSSQKAINH--------------NPHITEKLE 261
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G
Sbjct: 262 VLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGH 321
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK+
Sbjct: 322 LRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKH 379
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 380 YDDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPD 436
>gi|432847957|ref|XP_004066233.1| PREDICTED: DNA polymerase lambda-like [Oryzias latipes]
Length = 577
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 207/425 (48%), Gaps = 35/425 (8%)
Query: 2 APKTTRKPTPA-LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP +KP + F+ + V+L+ G+ N R QI+++++ QMG +E L VTH
Sbjct: 25 APPMKKKPDEIEVKGGNPFSRLTVYLLPAGIGNARCQIFQRQIQQMGGQLESSLCAAVTH 84
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGEN 116
V+ +MD + +L+ + L +++ WL + + + D Y ++L D +G +
Sbjct: 85 VVVDDSMDGDRVLRLLKVDGLPS-GVHLVKCSWLSMCISERKLLDMDGYSLQLLDMDGYS 143
Query: 117 IADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMS 175
+ +L + S E + K I + D E Q + + T + +
Sbjct: 144 L---LLPKRSSESKLESVSEKQADFKSIAENFPDPETLQTKQEEAALTQTIPDTKEEVGG 200
Query: 176 SESLTN-----TLST----------ASASPD--------FSSHHITDPSLLYNPPDLNKN 212
E + L T AS +PD + S + NK+
Sbjct: 201 EEDCVSQSDLVALITGQHPEEESPGASGNPDPEAVVEKTVPGKWVCAQSSKSKTNNFNKH 260
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE 272
IT+ L Y G+ R+ Y KA+ ++ + S + +PGIGK M D I E
Sbjct: 261 ITDKLELLAKAYTHQGDKWRALGYSKAVNALKSYHKPVTSYQEACQIPGIGKRMADKIDE 320
Query: 273 IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ 332
I+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++ + L+ +Q
Sbjct: 321 IMESGHLRKLDHI--GEAVPVLELFTNIWGAGAKTAQLWYQQGFRTLEDIRTKARLSATQ 378
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++GLK+++D R+PR E +E+++++A + P ++ + GSYRRGKA+CGD+DV+I
Sbjct: 379 KIGLKHYNDFLERMPREEAAAIEKVVREAVRTLDPGLVAVACGSYRRGKATCGDVDVLIT 438
Query: 393 HPDRK 397
HPD K
Sbjct: 439 HPDGK 443
>gi|440912422|gb|ELR61992.1| DNA polymerase lambda [Bos grunniens mutus]
Length = 575
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/417 (29%), Positives = 196/417 (47%), Gaps = 61/417 (14%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG- 129
L +++ WL L RL + ++ K LD + D+V G G
Sbjct: 101 PQLPP-GAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKTDQVSFTPPGAGE 159
Query: 130 -------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESK 158
TSSDGE+S ++ + S D+E A
Sbjct: 160 AQPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALIS 216
Query: 159 GDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
G T + SP + ESL + +S +H N +ITE
Sbjct: 217 GRYPTPFEGDGEPSP-APESLDKWVCAQPSSQKAINH--------------NPHITEKLE 261
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G
Sbjct: 262 VLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGH 321
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK+
Sbjct: 322 LRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKH 379
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 380 YDDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPD 436
>gi|395502283|ref|XP_003755511.1| PREDICTED: DNA polymerase lambda [Sarcophilus harrisii]
Length = 565
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 196/397 (49%), Gaps = 18/397 (4%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEAL 69
L+ + ++V ++ G+ R +I+ ++++Q G + + +TH++ A+D E
Sbjct: 34 LEGGEWLSPLQVHVLPAGIGRARAEIFEKQIIQHGGRICSPQAPGITHIVVDEAVDCERA 93
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GN 128
L+ + L +++ WL L+ + V + I + + D ++ Q G
Sbjct: 94 LRLLKLSQLP-LGVQIVKSAWLSQCLQEQKLVDTAGFSIFIPDRYLDETDNQVTSFQPGC 152
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGD-VETNALSEAPNSPMSSESLTN----TL 183
TS+ E +++ + E++ E +P E+L +
Sbjct: 153 SGTSAQAGLPSAAAFAPPQEPHSELNTQTQPNSYESSDEEEVQVTPADLEALITGRYPST 212
Query: 184 STASASPDFSSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
A P + ++D + P + N +ITE L Y G+ RS SY K
Sbjct: 213 PEGDAMPCLAPT-VSDKWVCAQPSSQKRTNHNSHITEKLEVLAKAYAVQGDRWRSLSYSK 271
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 272 AINALKSFHKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPVLELFS 329
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG+G TAQ Y++G RTL+D+++ +LT Q +GLK+++D RIPR E ++E+ +
Sbjct: 330 NIWGVGSKTAQMWYQQGFRTLEDIESRATLTSQQAIGLKHYEDFLKRIPREEASEIEQTV 389
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 390 REAAHALNPGLLSVACGSYRRGKATCGDVDVLVTHPD 426
>gi|291404681|ref|XP_002718713.1| PREDICTED: DNA-directed DNA polymerase lambda [Oryctolagus
cuniculus]
Length = 575
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/420 (28%), Positives = 194/420 (46%), Gaps = 73/420 (17%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA-MDLEALLQQVSKQHLAR 80
+RV +V G+ R +++ +++VQ G V + VTH++ D++ +
Sbjct: 44 LRVHVVPTGIGRARAELFEKQVVQHGGQVCPAQAPGVTHIVVDEDVDCERALRLLRLPRL 103
Query: 81 FKGS-VIRYQWLEDSLRLGEK----------------------------------VSEDL 105
G+ +++ WL SL L E+ E L
Sbjct: 104 PAGARLVKSAWL--SLCLQEQRLVDTAGFQVFVPSRYLDQPQPSKADGDSSPPPGTHEAL 161
Query: 106 YRIKLDPEGENIADRVLSQIQGNGNT-----SSDGESSHRKKIKSSTEDVE-----HFQA 155
R L P L G + +SD E+S ++ + S D+E H+
Sbjct: 162 LRTALSPASPPTRPGALPPKAGKAPSTQAQPASDDEASDGEEPQVSAADLEALLSGHYPT 221
Query: 156 ESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITE 215
+GD E S AP E+L + +S ++H N +ITE
Sbjct: 222 RPEGDAEP---SPAP------EALEKWVCAQPSSQKATNH--------------NSHITE 258
Query: 216 IFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT 275
L Y G+ R+ Y KAI ++ P + S + +PG+GK M + I EI+
Sbjct: 259 KLEVLAKAYSVQGDKWRALGYAKAINALKSFPKPVSSYQEACSIPGVGKRMAEKIVEILE 318
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 335
+G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +G
Sbjct: 319 SGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIG 376
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LK++DD R+PR E ++E+ +++A + P ++ + GS+RRGKA+CGD+DV+I HPD
Sbjct: 377 LKHYDDFLERMPREEAAEIEQTVREAAQAFNPGLLCVACGSFRRGKATCGDVDVLITHPD 436
>gi|443727490|gb|ELU14231.1| hypothetical protein CAPTEDRAFT_169992 [Capitella teleta]
Length = 556
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 194/381 (50%), Gaps = 29/381 (7%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMD---LEALLQQVSKQH 77
++ +V G+ R+ I++++L + G + L+ ++THV+ D LL + Q+
Sbjct: 64 IKALIVPTGIGKARISIFKKQLEKYGGSFLSDLNDAELTHVIVDDKVEFARLLNILKVQN 123
Query: 78 LARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGES 137
++ ++ QWL SL+ D ++ A +S+ +T SD +
Sbjct: 124 ISE-DIEIVTTQWLSSSLK--------------DHTCKDTASYCISR----PSTKSDSKK 164
Query: 138 SHRKKIKS-STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
S + S S +E A+ + ++ S + +E +H
Sbjct: 165 SEVEPCSSKSFNTIEKPAAQIICNDSSDYDSGSDRETGVAEERQGVTKNVPCGSWVCAHS 224
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
+P P+ NK+IT+ L Y + R+ Y KAI ++K P I + ++
Sbjct: 225 SGNPR-----PNFNKHITDKLEALAKTYENTNDRWRALGYAKAIMTLKKHPKAIATWEEA 279
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
K LPG+G+ + D I EIV +G+L KL+ E+++ I+LF ++WG G TA+ +G
Sbjct: 280 KSLPGVGEKLADKIWEIVESGQLRKLDELTSQEEIQAINLFSDIWGAGATTARAWVAQGF 339
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
RTLDD++ + L Q++GL+Y++++ R+PR E ++E ++ KA +++ +I + GS
Sbjct: 340 RTLDDIRTKAHLNRHQKIGLQYYEELLDRMPRSEAAEIEAVVVKAAKDIDENMIAMACGS 399
Query: 377 YRRGKASCGDLDVVIMHPDRK 397
+RRGKA+CGD+DV+I HPD K
Sbjct: 400 FRRGKATCGDVDVLITHPDGK 420
>gi|426252963|ref|XP_004020172.1| PREDICTED: DNA polymerase lambda isoform 1 [Ovis aries]
Length = 575
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 193/405 (47%), Gaps = 37/405 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRVHVVPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNGN 130
L +++ WL L RL + ++ K LD + AD+V +
Sbjct: 101 PQLPP-GAQLVKSAWLSLCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQV------SFT 153
Query: 131 TSSDGESSHRKKIKSS------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
GE+ R + S T+ V QA++ D ET+ E S E+
Sbjct: 154 PPRAGEAQPRTALSPSRPLTRHVSPSWRTDAVASIQAQTSSDGETSDGEEPQVSAADLEA 213
Query: 179 LTNTLSTA--------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 230
L + S +P+ + + N +ITE L Y G+
Sbjct: 214 LISGRYPTPFEGDDEPSPAPEGLGKWVCAQPSSQKAINYNPHITEKLEVLAKAYSVQGDK 273
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 WRALGYAKAINALKSFHKPVSSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SES 331
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y +G R L+D++N LT Q +GLK++DD R+PR E
Sbjct: 332 VPVLELFSNIWGAGTKTAQMWYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDRMPREE 391
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++E+ +++A + + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 392 AAEIEQTVREAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPD 436
>gi|326923796|ref|XP_003208120.1| PREDICTED: DNA polymerase lambda-like [Meleagris gallopavo]
Length = 576
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 204/401 (50%), Gaps = 38/401 (9%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL-A 79
++++ + R +I+ +++VQ G V +L +VTHV+ MD + + + L +
Sbjct: 46 AYVLQASIGQARAEIFHKQIVQNGGFVHSRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 105
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENIADRVLS--QIQGNGNTSS 133
R + +++ WL D +R + ++ Y + + EGE + L +IQ + S+
Sbjct: 106 RLQ--LVKASWLSDCIRDQKLLNTAGYSVFIPRRYREEGEQQQQQFLGSEEIQSSTEGSA 163
Query: 134 D--------GESSHR-------KKIKSSTEDVEHFQAE----SKGDVETNALSEAPNSPM 174
G+SS + ++ D E + E ++GD+E AL + P+
Sbjct: 164 AEPNVKAQVGDSSQQNPGSLAQQQPSEKVYDDEDSEGEDASVTQGDLE--ALISG-HYPV 220
Query: 175 SSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF 234
T+ S+A A P S + S + N+ ITE L Y G+ R+
Sbjct: 221 KLSEETSGSSSAVAQP--VSKWVCAQSSHSKKENHNQCITEKLEVLAKAYSVQGDKWRAL 278
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V +
Sbjct: 279 GYAKAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVL 336
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
LF +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++
Sbjct: 337 ELFSNIWGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEI 396
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 397 EQTVRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPD 437
>gi|126273242|ref|XP_001369819.1| PREDICTED: DNA polymerase lambda [Monodelphis domestica]
Length = 564
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 191/397 (48%), Gaps = 37/397 (9%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL 78
++V ++ G+ R +I+ ++++Q G + + +TH++ +D E L+ + L
Sbjct: 43 LQVHVLPVGIGRARAEIFEKQIIQHGGQICSPQAPGITHIVVDETVDGERALRLLKLPQL 102
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GNGNTSSDGES 137
+++ WL L+ + V D + + P D+ Q G TS+
Sbjct: 103 P-LGAQLVKSAWLSQCLKEQKLVDTDGFHVVFIPN--RYLDKADISFQPGPSGTSAQAGL 159
Query: 138 SHRKKIKSSTEDVEHFQAESKG-----------------DVETNALSEAPNSPM--SSES 178
S + E +++ D+E P++P + S
Sbjct: 160 SSVAPLAPPQEPHSRLGIQAQANSDDEDSDEEEVRVTPDDLEALITGRYPSTPEGDTEPS 219
Query: 179 LTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
L LS SS +T+ +L +ITE L Y G+ R+ Y K
Sbjct: 220 LAPNLSEKWVCAQPSSQKMTNHNL---------HITEKLEVLAKAYAVQGDRWRTLGYSK 270
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ P + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 271 AINALKSFPKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPILELFS 328
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG+G TAQ Y++G RTL+D++++ +L+ Q +GLK+++D RIPR E ++E+ +
Sbjct: 329 NIWGVGAKTAQMWYQQGFRTLEDIQSQATLSTQQAIGLKHYEDFLKRIPREEAAEIEKTV 388
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 389 RETAHTLNPGLLSVACGSYRRGKATCGDVDVLVTHPD 425
>gi|311705739|gb|ADQ01135.1| DNA polymerase lambda [Alouatta sara]
Length = 575
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 196/406 (48%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKRIVQHGGQLCPAQAPGVTHIVVDDGMDYERALCLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
L + +++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ ++ + QA+ D ET+ E S E
Sbjct: 153 IPSGTHEALLQTALFPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSTADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDCEPRVAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACRIPGIGKRMAEKIVEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR
Sbjct: 331 SVPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|260817611|ref|XP_002603679.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
gi|229289001|gb|EEN59690.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
Length = 510
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 191/389 (49%), Gaps = 28/389 (7%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL--LQQVSKQHLA 79
+R F++ G+ R+ I+++++ + G + ++S +H++ D L ++ K
Sbjct: 1 VRAFILPAGLGKARMDIFKRQIPRFGGDLHGQISSNTSHIVVDDNMEYDRLCRILKVEKP 60
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH 139
SV+ W+ D + + D Y IK+ ++ D S + S
Sbjct: 61 PVHASVVHANWVSDCIESRTLLGIDEYTIKVP---ASMDDSWTSHSDWPASCLSVPLIGL 117
Query: 140 RKKIKSSTEDVEHFQAE--SKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 197
+ D + F A + + S+ P SP L N + +S +
Sbjct: 118 NFQKFYHICDNQKFNAWLLRRHNQHEMGPSDWPTSPGYMIILNNDRGKWVCAEPSTSKGV 177
Query: 198 TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD--- 254
+ NK+IT+ F L Y+ + R+ SY KAI ++++ P I S +
Sbjct: 178 ----------NYNKHITDKFQLLAKAYKNTSDQWRALSYTKAIAILQRHPKPITSWEVRH 227
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ LPG+G+ + D I E+V +G L KL+H + + ++LF +VWG G TA
Sbjct: 228 CCTFLEEAHSLPGVGQRLADKIWEVVESGHLRKLDHLGPEHEA--LNLFNDVWGAGAKTA 285
Query: 309 QKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
Q+ ++G RTLDDL+ + LT Q++GLK++DD R+PR E ++ER +++ E + P+
Sbjct: 286 QQWLQQGLRTLDDLRTKAKLTRQQQIGLKHYDDFLDRMPREEAAEIERTVREMAESINPD 345
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRK 397
++ + GSYRRGK +CGD+DV+I HPD K
Sbjct: 346 LMAMACGSYRRGKLNCGDVDVLITHPDGK 374
>gi|291228090|ref|XP_002734013.1| PREDICTED: Polymerase (DNA directed), lambda-like [Saccoglossus
kowalevskii]
Length = 642
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 217/432 (50%), Gaps = 55/432 (12%)
Query: 4 KTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA 63
K T +PA + + +F+++ G+ R I ++ + G T+ E++ + THV+
Sbjct: 88 KQTEAQSPA---DKFMKDVNIFILQAGLGKMRANILSKQFTKYGGTIHEQILDETTHVVV 144
Query: 64 ---MDLEALLQ----QVSKQHLARFKGSVIRYQWLEDSL--------------------- 95
M+++ + HL KG+ + + E+ L
Sbjct: 145 DEKMEIDRFCRILKLDTPPTHLKIVKGNWLSNCFAEEKLVDTCDFELDVNTDAKLEKDER 204
Query: 96 RLGEKVSEDLYR-IKLDPEGENIADRVLS-QIQGNGNTSSDGESSHRKKIKSSTEDVEHF 153
+ EK+ D+ R I P G + +D V++ +I SS +SS+ + KS+
Sbjct: 205 QSKEKLPADVTRGINEQPGGHSKSDVVVADEIHP---CSSKTDSSYHTEAKSN------- 254
Query: 154 QAESKGDVETNALSEAPNSPMSSESLTN----TLSTASASPDFSSHHITDPSLLYNPP-- 207
+SKG ++ E + S T+ S+A+++P+ S + + + P
Sbjct: 255 --QSKGYDSEDSAYEPSDDEDYLSSFTDGPTSGTSSATSTPNTSPQKLPKGNWVCAKPVS 312
Query: 208 ----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
+ NK+IT+ L+ Y+ + R+ Y KAI ++ I + ++ +PGIG
Sbjct: 313 NLGTNHNKHITDKLQILMQTYKNTKDQWRALGYSKAISALKNYHKAITTWEEANSIPGIG 372
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K M D + EI+ +G L K+++ + E+V+ I+LF ++ G+GP AQ+LY++G RT+DD++
Sbjct: 373 KKMADKVWEIIESGHLRKIDYVCQGEEVKAINLFTKIHGVGPTIAQELYQQGFRTIDDVR 432
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+ L Q++G+K+FDD R+ R E ++E++++ + P +I + GSYRRGK +
Sbjct: 433 EKAKLNRQQKIGIKHFDDFLDRMSREEAGEIEKVVKDMALSINPGLIAMACGSYRRGKPT 492
Query: 384 CGDLDVVIMHPD 395
CGD+DV++ HPD
Sbjct: 493 CGDVDVIVTHPD 504
>gi|351715599|gb|EHB18518.1| DNA polymerase lambda [Heterocephalus glaber]
Length = 572
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/428 (28%), Positives = 195/428 (45%), Gaps = 52/428 (12%)
Query: 2 APKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHV 61
AP K +S + +RV +V G+ R +++ ++++Q G + + VTH+
Sbjct: 24 APAKIPKRQEGEESGEWLSSLRVHVVPTGIGRTRAELFEKQIIQHGGQICPAQAPGVTHI 83
Query: 62 L---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI-----KLD-- 111
+ AMD E L+ + +++ WL L+ V + I LD
Sbjct: 84 VVDEAMDCERALRLLRLP-WLPPGTQLVKSAWLSLCLQERRLVDTASFSILIPNRNLDQP 142
Query: 112 -----------PEG--ENIADRVLSQIQGNGNTSSDGESSHRKKIKSS----TEDVEHFQ 154
P G E + S + G + E + + + S T DVE Q
Sbjct: 143 QPTKAEQDSSAPPGSHEVLLKTAFSSLSGAVSPPQKAEEASSTQAQPSSNDETSDVEGPQ 202
Query: 155 AESKGDVETNALSEAPNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPP 207
S D+E P P + E+L + +S ++H
Sbjct: 203 V-SAADLEALISGNYPTPPEENSGPGPAPEALDKWVCAQPSSQKVTNH------------ 249
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +ITE L+N Y G+ R+ Y KAI ++ + S + +PG+GK M
Sbjct: 250 --NLHITEKLEVLVNAYSVQGDKWRALGYTKAISALKSFHKPVSSYQEACSIPGVGKRMA 307
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ I EI+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ S
Sbjct: 308 EKIMEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQAS 365
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q +GLK++ D R+PR E ++E+ ++ A + + P + + GSYRRGK +CGD+
Sbjct: 366 LTDQQAIGLKHYSDFLERMPREEAAEIEQTVRVAAQALSPGLWCVACGSYRRGKLTCGDV 425
Query: 388 DVVIMHPD 395
DV++ HPD
Sbjct: 426 DVLVTHPD 433
>gi|311705747|gb|ADQ01139.1| DNA polymerase lambda [Saimiri sciureus]
Length = 575
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 53/413 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL SL L E+ D+ + I R L Q Q + ++
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQ---PSKTEP 149
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALS------EAPNS---PMSSESLTNTLSTA 186
+SS I S T + A T LS EAPN+ P+S + ++ T
Sbjct: 150 DSS----IPSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQ 205
Query: 187 SASPDF----SSHHIT---------------DPSLLYNPP-----DLNKNITEIFGKLIN 222
++ D S H+ T D + +P + N +ITE L
Sbjct: 206 VSAADLEALISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAK 265
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL
Sbjct: 266 AYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVMEILESGHLRKL 325
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
+H E V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D
Sbjct: 326 DHI--SESVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDF 383
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R+PR E ++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 384 LERMPREEAAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPD 436
>gi|311705751|gb|ADQ01141.1| DNA polymerase lambda [Callicebus cupreus]
Length = 575
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 198/406 (48%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVCTGIGRARAELFEKQIVQHGGQLCPAQAPDVTHIVVDDGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
L + +++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ + + QA+ D ET+ E S E
Sbjct: 153 IPSGTHEALLQTALFPPPSPTRPVFPPQKAKGAPNTQAQPISDDETSDGEETQVSTADLE 212
Query: 178 SLTNTLSTASASPDF---SSHHITDPSLLYNP-----PDLNKNITEIFGKLINIYRALGE 229
+L + S D+ + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDYEPRPTPEVLDKWVCAQPSSQKVANHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR
Sbjct: 331 RVPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+D++I HPD
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDMLITHPD 436
>gi|403259667|ref|XP_003922326.1| PREDICTED: DNA polymerase lambda isoform 1 [Saimiri boliviensis
boliviensis]
gi|403259669|ref|XP_003922327.1| PREDICTED: DNA polymerase lambda isoform 2 [Saimiri boliviensis
boliviensis]
gi|403259671|ref|XP_003922328.1| PREDICTED: DNA polymerase lambda isoform 3 [Saimiri boliviensis
boliviensis]
Length = 575
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 53/413 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL SL L E+ D+ + I R L Q Q + ++
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQ---PSKTEP 149
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALS------EAPNS---PMSSESLTNTLSTA 186
+SS I S T + A T LS EAPN+ P+S + ++ T
Sbjct: 150 DSS----IPSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQ 205
Query: 187 SASPDF----SSHHIT---------------DPSLLYNPP-----DLNKNITEIFGKLIN 222
++ D S H+ T D + +P + N +ITE L
Sbjct: 206 VSAADLEALISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAK 265
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL
Sbjct: 266 AYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKL 325
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
+H E V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D
Sbjct: 326 DHI--SESVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDF 383
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R+PR E ++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 384 LERMPREEAAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPD 436
>gi|355712671|gb|AES04427.1| polymerase , lambda [Mustela putorius furo]
Length = 575
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 28/401 (6%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++ Q G + + VTH++ MD E +L+ +
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQITQYGGQICAAQAPGVTHIVVDEGMDCERVLRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL L+ V + I + P + LS+ + +
Sbjct: 101 PQLPQ-GAQLVKSTWLSLCLQEKRLVDTAGFNIYI-PNSRYLDQPQLSKADQDSSVPPGA 158
Query: 136 ESSHRKKIKSS-------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNT 182
+ + + S TE+ QA+ D ET+ E S E+L +
Sbjct: 159 QEAVLRTALSPPRPPTRPVSPPWRTEEAPSTQAQPDCDDETSDGEETQVSAADLEALISG 218
Query: 183 LSTASASPD---FSSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSF 234
+ S D + D + P + N +ITE L Y G+ R+
Sbjct: 219 HCSPSLEGDAEPIPAPKGLDKWVCAQPSSQKAVNYNPHITEKLEVLAKAYSVQGDKWRAL 278
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V +
Sbjct: 279 GYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVL 336
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
LF +WG G TAQ Y++G RTL+D++++ SLT Q +GLK+++D RIPR E ++
Sbjct: 337 ELFSNIWGAGTKTAQMWYQQGFRTLEDIRDQASLTSQQAIGLKHYEDFLERIPREEATEI 396
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E+ +++A + P ++ + GSYRRGKASCGD+DV++ HPD
Sbjct: 397 EQTVREAAQAFSPGLLCVACGSYRRGKASCGDVDVLLTHPD 437
>gi|241846261|ref|XP_002415548.1| DNA polymerase lambda, putative [Ixodes scapularis]
gi|215509760|gb|EEC19213.1| DNA polymerase lambda, putative [Ixodes scapularis]
Length = 477
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 183/381 (48%), Gaps = 57/381 (14%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVS 74
+F G RV++V G+ R+Q++ +KLV+ GA + + K THV+ +D E L + +
Sbjct: 1 MFVGSRVYVVPTGMGKPRVQLFLKKLVEHGAEIADS-EKDATHVVVAECVDRERLPKLID 59
Query: 75 KQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 134
+ L+ ++R W+ DSL+ S Y + D E + VL+ + +
Sbjct: 60 SKKLSP-STRIVRSAWISDSLKNASLASTMPYALTCDLPHE-CGETVLNSDCAGPSGAEV 117
Query: 135 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 194
G + H K+ P P E
Sbjct: 118 GAADHGKE---------------------------PEEPARKECADV------------- 137
Query: 195 HHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 254
P + N +I E ++ Y++ + R+ SY +AI +++ P +I S +
Sbjct: 138 -----------PVNRNVHIIEQLQAMVETYQSTKDHWRALSYERAIMALKRHPTEITSWE 186
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ + LP +G+ + D I EIV GKL KLE F+ E++ + LF ++WG GP+TA++ +
Sbjct: 187 EARSLPKVGERLADKIWEIVERGKLRKLEEFQGQERLTALQLFTKIWGSGPSTAERWVHQ 246
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G TL++L + LT Q++GLK+F D ++PR E ++ + KA + P + ++
Sbjct: 247 GFTTLEELASSGQLTGQQKIGLKHFHDFLEKMPREEAGEIADTVAKAALSLQPGLTVVPC 306
Query: 375 GSYRRGKASCGDLDVVIMHPD 395
GSYRRGK+ CGD+DV+I H +
Sbjct: 307 GSYRRGKSMCGDVDVLISHAE 327
>gi|410976013|ref|XP_003994420.1| PREDICTED: DNA polymerase lambda [Felis catus]
Length = 609
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 193/424 (45%), Gaps = 75/424 (17%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICTAQAPGVTHIVVDEGMDCERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
L + +++ WL SL L E+
Sbjct: 100 PRLPQ-GAQLVKSTWL--SLCLQERRLVDTAGFSIYIPNRYPDQPHVSKADQDFSAPPGA 156
Query: 102 SEDLYRIKLDPEGE-----NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE----- 151
E L R L P + R + SD E+S ++ + S D+E
Sbjct: 157 HEALLRTALSPPSPPTRPVSPPQRAEEALSTQAQPGSDDETSDGEENQVSAADLEALISG 216
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNK 211
H+ +GD E S AP E L + +S ++H N
Sbjct: 217 HYPTPLEGDDEP---SPAP------EGLDKWVCAQPSSQKTTNH--------------NP 253
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
+ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M + I
Sbjct: 254 HITEKLEVLAKAYNVQGDKWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIV 313
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
EI+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++ SLT
Sbjct: 314 EILESGHLRKLDHI--SESVPVLELFSNIWGAGAKTAQMWYQQGFRTLEDIRSQASLTTQ 371
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
Q +GLK++DD RIPR E ++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 372 QTIGLKHYDDFLERIPREEAAEIEQTVRESAQAFTPGLLCVACGSYRRGKATCGDVDVLL 431
Query: 392 MHPD 395
HPD
Sbjct: 432 THPD 435
>gi|194205745|ref|XP_001499852.2| PREDICTED: DNA polymerase lambda, partial [Equus caballus]
Length = 526
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 194/424 (45%), Gaps = 75/424 (17%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R ++ G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVLPTGIGRARAEVFEKQIIQHGGQICPAQAAGVTHIVVDEGMDYERALRILRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
L +++ WL SL L E+
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSIFIPNRCLDQTQLSKADQDSSTPPGA 157
Query: 102 SEDLYRIKLDPEGENI--------ADRVLS-QIQ-GNGNTSSDGESSHRKKIKSSTEDVE 151
E L R L P A+ LS Q+Q G + SDGE + + S D+E
Sbjct: 158 REPLLRTALSPPPSPARPVSPPRRAEEALSTQVQPGFDDEISDGEET-----QVSAADLE 212
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNK 211
A G T L E P + + A S +++H N+
Sbjct: 213 ---ALISGHYPT--LLEEDGEPCPAPKGLDKWVCAQPSSQKATNH-------------NR 254
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
+ITE L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I
Sbjct: 255 HITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACGIPGIGKRMAEKII 314
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
EI+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ SLT
Sbjct: 315 EILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTTQ 372
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
Q +GLK+++D RIPR E ++E+ +QK+ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 373 QAIGLKHYNDFLERIPREEATEIEQTVQKSAQAFNPGLLCVACGSYRRGKATCGDVDVLL 432
Query: 392 MHPD 395
HPD
Sbjct: 433 THPD 436
>gi|194041875|ref|XP_001926893.1| PREDICTED: DNA polymerase lambda [Sus scrofa]
Length = 575
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 195/406 (48%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRAHVVPTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ----GNGNT 131
L +++ WL SL L E+ D + I +R L Q Q GN ++
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPERYLDQAQLSKAGNDSS 152
Query: 132 SSDG--ESSHRKKIK---------SSTEDVEHF---QAESKGDVETNALSEAPNSPMSSE 177
+S G E+ R + S +E E F QA+ D +T+ E S E
Sbjct: 153 TSPGARETPLRTALSPPSPPTRPVSPSERTEEFASIQAQPGSDGDTSDGEETQVSAADLE 212
Query: 178 SLTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + S +P + + N +ITE L Y G+
Sbjct: 213 ALISGRYPTPLEEDGEPSPAPKGLDKWVCAQPSSQKATNHNPHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACAIPGIGKRMAEKILEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++ D R+PR
Sbjct: 331 SVPVLQLFSNIWGAGTKTAQLWYHQGFRSLEDIRNQASLTTQQAIGLKHYHDFLDRMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +++A + P ++ + GSYRRG+A+CGD+DV++ HPD
Sbjct: 391 EASEIEQTVREAAQAFNPGLLCVACGSYRRGRATCGDVDVLLTHPD 436
>gi|431838887|gb|ELK00816.1| DNA polymerase lambda [Pteropus alecto]
Length = 575
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 195/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ +MD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIVQYGGQICPAQDSGVTHIVVDESMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L +++ WL SL L E+ D + I +R L Q Q + +D
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQ---LSKADQ 149
Query: 136 ES-----SHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPM 174
+S +H +K++ E+ QA+ D ET+ E S
Sbjct: 150 DSFPPPGTHEGLLKTALSPPPPPTRPVSPPQRAEEASSTQAQPSSDDETSDGEETQVSAA 209
Query: 175 SSESLTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 226
E+L + S +P+ + + N +ITE L Y
Sbjct: 210 DLEALISGCYPTPLEGDGEPSPAPEGLEKWVCAQPSTQKATNHNPHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++DD + R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTAQQAIGLKHYDDFRERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ ++++ + P ++ + GSYRRG+A+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVRESAQAFNPGLLCVACGSYRRGRATCGDVDVLITHPD 436
>gi|348578599|ref|XP_003475070.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Cavia porcellus]
Length = 574
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 192/421 (45%), Gaps = 69/421 (16%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ AMD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQAPGVTHIVVDEAMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ--------- 126
+++ WL SL L E+ D + I R L+Q Q
Sbjct: 101 P-QLPPGAQLVKSTWL--SLCLQERRLVDTAGFCI-----FIPSRYLNQSQSSQTDQDSS 152
Query: 127 ---------------------GNGNTSSDGESSHRKKIKSSTEDVEHFQAE----SKGDV 161
G+ + E + I+ S++D E +E S D+
Sbjct: 153 APSASPGTCEVLLKTAVCPPSGDASLPQKAEEASSTHIQPSSDD-ETSDSEGPQVSAADL 211
Query: 162 ETNALSEAPNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNIT 214
E P +P ++E+L + S+S ++H N +IT
Sbjct: 212 EALISGHYPATPEENSGPGPATETLDKWVCAQSSSQKVTNH--------------NLHIT 257
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
E L N Y G+ R+ Y KAI ++ + S + +PG+GK M + IQEI+
Sbjct: 258 EKLEVLANAYNIQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGKRMAEKIQEIL 317
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
+G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N SLT Q +
Sbjct: 318 ESGHLRKLDHI--SESVPVLQLFSSIWGAGTKTAQMWYHQGFRSLEDIRNLASLTAQQAI 375
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLK++ D R+PR E ++E+ ++ A P ++ + GSYRRGK +CGD+DV+I HP
Sbjct: 376 GLKHYSDFLERMPRDEAAEIEQTVRAAAYTCNPGLLCVACGSYRRGKPTCGDVDVLITHP 435
Query: 395 D 395
D
Sbjct: 436 D 436
>gi|395828239|ref|XP_003787293.1| PREDICTED: DNA polymerase lambda [Otolemur garnettii]
Length = 571
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 191/404 (47%), Gaps = 39/404 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++++++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHIVPTGIGRARAELFKKQIVQHGGRICPAQDPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
+++ WL SL L E+ D+ + I +R L Q Q N
Sbjct: 101 P-QLPLGAHLVKSAWL--SLCLQERRLVDVAGFSI-----FIPNRYLDQPQPNKTEQDST 152
Query: 136 ESSHRKKIKS--STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
S H + + S K + +A + + +S+S +STA S
Sbjct: 153 PSVHEAVLMTALSPPSTRPVSPPQKAEEAPSAQPQPISDDETSDSEEMRVSTADLEALIS 212
Query: 194 SHHIT------DPSLLYNPPDLNK----------------NITEIFGKLINIYRALGEDR 231
H+ T +P+L P L+K +ITE L YR G+
Sbjct: 213 GHYPTPLEGDREPTL--APDHLDKWVCAQSSSQKATNHNLHITEKLEVLAKAYRVQGDKW 270
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V
Sbjct: 271 RALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESV 328
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
+ LF +WG G TA Y +G R+L+D++++ SLT Q +GLK++DD R+PR E
Sbjct: 329 PVLELFSNIWGAGTKTALMWYHQGFRSLEDIRSQASLTIQQAIGLKHYDDFLERMPREEA 388
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++E+ +++A P ++ + GS+RRGK +CGD+DV+I HPD
Sbjct: 389 AEIEQTVREAAHAFNPGLLCVACGSFRRGKVTCGDVDVLITHPD 432
>gi|302766281|ref|XP_002966561.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
gi|300165981|gb|EFJ32588.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
Length = 310
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKR 398
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD R
Sbjct: 126 IPRDEVADTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPDGSR 178
>gi|444517529|gb|ELV11632.1| DNA polymerase lambda [Tupaia chinensis]
Length = 574
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 143/268 (53%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
+D ESS ++ + S D+E H+ +GD E N + EA L +
Sbjct: 193 TDDESSDGEETQVSAADLEALISGHYPTPPEGDAEPNPVPEA---------LDKWVCAQP 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+S ++H N +ITE L YR G+ R+ Y KAI ++
Sbjct: 244 SSQKATNH--------------NAHITEKLEVLAKAYRVQGDQWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + + EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKVLEILESGHLRKLDHV--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
A+ Y +G R+L+D++ + +LT Q +GLK++DD R+PR E ++E+ +++A + + P
Sbjct: 348 ARMWYYQGFRSLEDIRTQATLTTQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNP 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLVTHPD 435
>gi|311705749|gb|ADQ01140.1| DNA polymerase lambda [Miopithecus talapoin]
Length = 574
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 195/405 (48%), Gaps = 38/405 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ R + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVARFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKS---------------STEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+H +++ T++ + QA+ D E + E S E+
Sbjct: 153 LPPGTHEALLQTVLPPPPPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 212
Query: 179 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 230
L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 LISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 272
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 330
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 331 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 390
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 435
>gi|302801283|ref|XP_002982398.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
gi|300149990|gb|EFJ16643.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
Length = 315
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD
Sbjct: 126 IPRDEVVDTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPD 175
>gi|311705725|gb|ADQ01128.1| DNA polymerase lambda [Hylobates agilis]
Length = 574
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + P
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNP 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPD 435
>gi|344274825|ref|XP_003409215.1| PREDICTED: DNA polymerase lambda isoform 1 [Loxodonta africana]
Length = 575
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 194/429 (45%), Gaps = 85/429 (19%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQASGVTHIVVDEGMDCERALRLLKL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ---GNGNTS 132
L +++ WL SL L E+ D + I +R L Q Q N ++S
Sbjct: 101 PQLPT-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQPSKANQDSS 152
Query: 133 -----------------------------------------SDGESSHRKKIKSSTEDVE 151
SD E+S ++ + S D+E
Sbjct: 153 TPPGPHEALLRTPLSPPPPPTRPVSPFQKAEEAPSIQTQPGSDDETSDGEETQVSAADLE 212
Query: 152 -----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
H+ +GD E P + + A S +++H
Sbjct: 213 ILISGHYPTPLEGDGE----------PSPTPKALDKWVCAQPSSQKATNH---------- 252
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N +ITE L Y G+ R+ Y KAI ++ + S + +PG+GK M
Sbjct: 253 ---NLHITEKLEVLAKAYTVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGVGKRM 309
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
+ + EI+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++
Sbjct: 310 AEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRSQA 367
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
SLT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++ + GSYRRGKA+CGD
Sbjct: 368 SLTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLLCVACGSYRRGKATCGD 427
Query: 387 LDVVIMHPD 395
+DV+I HPD
Sbjct: 428 VDVLITHPD 436
>gi|311705735|gb|ADQ01133.1| DNA polymerase lambda [Colobus guereza]
Length = 575
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 142/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + ST D+E H+ +GD E P + + + A
Sbjct: 194 SDDEASDGEETQVSTADLEALISGHYPTSLEGDCE----------PSPAPVVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLDVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|301756144|ref|XP_002913915.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Ailuropoda
melanoleuca]
Length = 575
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 192/406 (47%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--S 133
L + +++ WL SL L EK D G I +R L Q Q + S
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H + ++ E+ QA+ D ET+ E S E
Sbjct: 153 APPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLE 212
Query: 178 SL-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + ST S +P + + N +ITE L Y G+
Sbjct: 213 ALISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 391 EATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPD 436
>gi|281352050|gb|EFB27634.1| hypothetical protein PANDA_001756 [Ailuropoda melanoleuca]
Length = 537
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 192/406 (47%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 3 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 62
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--S 133
L + +++ WL SL L EK D G I +R L Q Q + S
Sbjct: 63 PQLPQ-GAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFS 114
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H + ++ E+ QA+ D ET+ E S E
Sbjct: 115 APPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLE 174
Query: 178 SL-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + ST S +P + + N +ITE L Y G+
Sbjct: 175 ALISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGD 234
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 235 KWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 292
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR
Sbjct: 293 SVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPRE 352
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 353 EATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPD 398
>gi|390473089|ref|XP_003734558.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Callithrix
jacchus]
Length = 575
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 195/406 (48%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
L + +++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ ++ + QA+ D ET+ E S E
Sbjct: 153 IPSGAHEALLQTALSPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDCEPRLAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ + L LEH +
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESVHLRNLEHI--SD 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK++DD R+PR
Sbjct: 331 SVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|432113053|gb|ELK35631.1| DNA polymerase lambda [Myotis davidii]
Length = 573
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 191/405 (47%), Gaps = 37/405 (9%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVS 74
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 40 CLSSLRAHVVPAGIGRARAELFEKQIVQHGGQIYSAQAPGVTHIVVDDGMDCERALRLLR 99
Query: 75 KQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 134
L +++ WL SL L E+ D + I +R L Q Q +
Sbjct: 100 LPRLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRFLDQPQLSKADQDS 151
Query: 135 GESSHRKKIKSST----------------EDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ ++++ E+ + QA+ D +T+ E P S E+
Sbjct: 152 PPGACEALLRTTPSPPPTPPRPVSPPQRIEEAPNTQAQPGSDDDTSDGEETPVSTADLEA 211
Query: 179 LTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 230
L + S +P+ + + N +ITE L Y G+
Sbjct: 212 LISGRYPIPPEGDGDPSPAPEGLKKWVCAQPSSQKATNHNTHITEKLEVLAKAYSVQGDK 271
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 272 WRALGYDKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SHS 329
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++N+ SLT Q +GLK++DD R+PR E
Sbjct: 330 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRNQASLTTQQAIGLKHYDDFLERMPREE 389
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++ HPD
Sbjct: 390 AAEIEQTVRESAQAFSPGLLCVACGSYRRGKATCGDVDVLLTHPD 434
>gi|354496552|ref|XP_003510390.1| PREDICTED: DNA polymerase lambda isoform 1 [Cricetulus griseus]
gi|344253425|gb|EGW09529.1| DNA polymerase lambda [Cricetulus griseus]
Length = 568
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 184/399 (46%), Gaps = 31/399 (7%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSK 75
+ +R ++ G+ R +++ ++++ G + + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHIIPTGIGRARAELFEKQIIHHGGQICSAQAPGVTHIVVDENMDCERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK-------VSEDLYRIKLDPEGENIADRVLSQIQGN 128
+++ WL SL L E+ S + + LD N AD +
Sbjct: 100 P-QLPPSAQLVKSTWL--SLCLQERRLIDTAGFSVCIPKSSLDQPQPNKADESTQEAVSR 156
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
S + + E A+ D ET+ E P +SS L +S
Sbjct: 157 TTLSPSPPHTRAASPPAKAEKAPRIPAQLGSDDETSD-EEGPQ--VSSADLEALISGHYP 213
Query: 189 SPDFSSHHITDPS-------LLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSY 236
+P DP + P + N++ITE L Y G+ R+ Y
Sbjct: 214 AP-LEEDGGPDPVPEALEKWVCAQPSSQKATNYNQHITEKLEVLAKAYSVQGDKWRALGY 272
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H + V + L
Sbjct: 273 AKAINALKSFHKPVSSYQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLEL 330
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+
Sbjct: 331 FSNIWGAGTKTAQMWYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEK 390
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 391 TVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPD 429
>gi|403259675|ref|XP_003922330.1| PREDICTED: DNA polymerase lambda isoform 5 [Saimiri boliviensis
boliviensis]
Length = 487
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E ++ E L +
Sbjct: 106 SDDETSDGEETQVSAADLEALISGHYPTSIEGDCEPR---------LAPEVLDKWVCAHP 156
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+S ++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 157 SSQKVTNH--------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P
Sbjct: 261 AQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNP 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 321 RLLCVACGSYRRGKVTCGDVDVLITHPD 348
>gi|397510308|ref|XP_003825540.1| PREDICTED: DNA polymerase lambda isoform 1 [Pan paniscus]
gi|397510310|ref|XP_003825541.1| PREDICTED: DNA polymerase lambda isoform 2 [Pan paniscus]
gi|397510312|ref|XP_003825542.1| PREDICTED: DNA polymerase lambda isoform 3 [Pan paniscus]
Length = 575
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 195/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|311705755|gb|ADQ01143.1| DNA polymerase lambda [Cercopithecus wolfi]
Length = 575
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 195/406 (48%), Gaps = 39/406 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVEGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPLPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|157830425|pdb|1BPE|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta; Evidence For
A Common Polymerase Mechanism
Length = 335
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|10433887|dbj|BAB14050.1| unnamed protein product [Homo sapiens]
gi|119570146|gb|EAW49761.1| polymerase (DNA directed), lambda, isoform CRA_e [Homo sapiens]
Length = 487
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|427930612|pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930613|pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930616|pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
gi|427930617|pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|442570357|pdb|3V7K|A Chain A, Co-crystal Structure Of K72e Variant Of Rat Polymerase
Beta: Enzyme- Dna Binary Complex
gi|442570360|pdb|3V7L|A Chain A, Apo Structure Of Rat Dna Polymerase Beta K72e Variant
Length = 340
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EEIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 196 MDVLLTHPN 204
>gi|206278|gb|AAA41901.1| DNA polymerase beta [Rattus norvegicus]
gi|1055330|gb|AAB00389.1| high molecular weight DNA polymerase beta [Rattus norvegicus]
Length = 335
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|148747154|ref|NP_058837.2| DNA polymerase beta [Rattus norvegicus]
gi|585064|sp|P06766.4|DPOLB_RAT RecName: Full=DNA polymerase beta
gi|640121|pdb|2BPF|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640124|pdb|2BPG|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640127|pdb|2BPG|B Chain B, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|14277831|pdb|1HUO|A Chain A, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277832|pdb|1HUO|B Chain B, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277837|pdb|1HUZ|A Chain A, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|14277838|pdb|1HUZ|B Chain B, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|157830424|pdb|1BPD|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|427930609|pdb|3UXN|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|427930610|pdb|3UXN|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|71051051|gb|AAH98668.1| Polymerase (DNA directed), beta [Rattus norvegicus]
gi|149057766|gb|EDM09009.1| rCG43201 [Rattus norvegicus]
Length = 335
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|10732732|gb|AAG22519.1|AF283478_1 DNA polymerase beta2 [Homo sapiens]
Length = 575
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|393715248|pdb|3V72|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator
E295k: Enzyme- Dsdna
Length = 335
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|442570354|pdb|3V7J|A Chain A, Co-crystal Structure Of Wild Type Rat Polymerase Beta:
Enzyme-dna Binary Complex
Length = 340
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 196 MDVLLTHPN 204
>gi|397510316|ref|XP_003825544.1| PREDICTED: DNA polymerase lambda isoform 5 [Pan paniscus]
Length = 487
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|119570142|gb|EAW49757.1| polymerase (DNA directed), lambda, isoform CRA_a [Homo sapiens]
Length = 514
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|380811840|gb|AFE77795.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ +T EAPN+ P+S + ++ T ++
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTK---EAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHI------TDPS---------LLYNPP-----DLNKNITEIFGKLINIYRA 226
D S H+ DPS + P + N +ITE L Y
Sbjct: 210 DLEALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|343959642|dbj|BAK63678.1| DNA polymerase lambda [Pan troglodytes]
Length = 575
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D+ R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDLLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|7019491|ref|NP_037406.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|291463287|ref|NP_001167555.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|17367126|sp|Q9UGP5.1|DPOLL_HUMAN RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase beta-2; Short=Pol beta2; AltName:
Full=DNA polymerase kappa
gi|6746387|gb|AAF27541.1|AF161019_1 DNA polymerase lambda [Homo sapiens]
gi|21780368|gb|AAM77696.1|AF525924_1 polymerase (DNA directed), lambda [Homo sapiens]
gi|6687796|emb|CAB65074.1| DNA polymerase lambda [Homo sapiens]
gi|119570144|gb|EAW49759.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570151|gb|EAW49766.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570153|gb|EAW49768.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|168275706|dbj|BAG10573.1| DNA polymerase lambda [synthetic construct]
Length = 575
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|10432813|dbj|BAB13852.1| unnamed protein product [Homo sapiens]
Length = 515
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|388453987|ref|NP_001253835.1| DNA polymerase lambda [Macaca mulatta]
gi|311705733|gb|ADQ01132.1| DNA polymerase lambda [Macaca fascicularis]
gi|355562721|gb|EHH19315.1| hypothetical protein EGK_19997 [Macaca mulatta]
gi|355783042|gb|EHH64963.1| hypothetical protein EGM_18298 [Macaca fascicularis]
gi|384946496|gb|AFI36853.1| DNA polymerase lambda isoform a [Macaca mulatta]
gi|384946498|gb|AFI36854.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ +T EAPN+ P+S + ++ T ++
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTK---EAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHI------TDPS---------LLYNPP-----DLNKNITEIFGKLINIYRA 226
D S H+ DPS + P + N +ITE L Y
Sbjct: 210 DLEALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|297687237|ref|XP_002821126.1| PREDICTED: DNA polymerase lambda isoform 1 [Pongo abelii]
gi|395741929|ref|XP_002821128.2| PREDICTED: DNA polymerase lambda isoform 3 [Pongo abelii]
gi|395741932|ref|XP_003777665.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 193/407 (47%), Gaps = 48/407 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L +++ WL SL L E+ D+ + I R L Q Q +
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPS------- 145
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPDF 192
++ I T + A S A EAPN+ P+S + ++ T ++ D
Sbjct: 146 KAEQDASIPPGTHEALLQTALSPPPPPQKA-KEAPNTQAQPISDDEASDGEETQVSAADL 204
Query: 193 ----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRALG 228
S H+ T P++L + N +ITE L Y G
Sbjct: 205 EALISGHYPTSLEGDCEPSPAPAVLGKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQG 264
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 265 DKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--S 322
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR
Sbjct: 323 ESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPR 382
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 383 EEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 429
>gi|311705731|gb|ADQ01131.1| DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 187 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 236
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 237 PSSQKATNH-------------NLHITEKLEVLAKAYGVQGDKWRALGYAKAINALKSFH 283
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 284 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 341
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 342 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 401
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 402 GLLCVACGSYRRGKATCGDVDVLITHPD 429
>gi|311705729|gb|ADQ01130.1| DNA polymerase lambda [Pongo pygmaeus]
Length = 568
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 192/399 (48%), Gaps = 32/399 (8%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS---------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLS 184
+H ++++ ++ + QA+ D E + E S E+L +
Sbjct: 153 IPPGTHEALLQTALSPPPPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHY 212
Query: 185 TASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSY 236
S D + + D + P + N +ITE L Y G+ R+ Y
Sbjct: 213 PTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQGDKWRALGY 272
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 273 AKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLEL 330
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+
Sbjct: 331 FSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQ 390
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 TVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 429
>gi|297687239|ref|XP_002821127.1| PREDICTED: DNA polymerase lambda isoform 2 [Pongo abelii]
Length = 480
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ A
Sbjct: 99 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLGKWVCAQ 148
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 149 PSSQKATNH-------------NLHITEKLEVLAKAYGVQGDKWRALGYAKAINALKSFH 195
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 196 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 253
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 254 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 313
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 314 GLLCVACGSYRRGKATCGDVDVLITHPD 341
>gi|114632443|ref|XP_001170074.1| PREDICTED: DNA polymerase lambda isoform 13 [Pan troglodytes]
gi|114632449|ref|XP_001170138.1| PREDICTED: DNA polymerase lambda isoform 16 [Pan troglodytes]
gi|410044269|ref|XP_003951782.1| PREDICTED: DNA polymerase lambda [Pan troglodytes]
gi|410219296|gb|JAA06867.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410262932|gb|JAA19432.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307616|gb|JAA32408.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410354323|gb|JAA43765.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 575
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 195/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARTELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|332212625|ref|XP_003255420.1| PREDICTED: DNA polymerase lambda isoform 4 [Nomascus leucogenys]
Length = 487
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|426365961|ref|XP_004050034.1| PREDICTED: DNA polymerase lambda isoform 4 [Gorilla gorilla
gorilla]
Length = 487
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|354482350|ref|XP_003503361.1| PREDICTED: DNA polymerase beta [Cricetulus griseus]
gi|344238920|gb|EGV95023.1| DNA polymerase beta [Cricetulus griseus]
Length = 335
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN +IT++ +L N + + + + +Y KA VI K P KI+S ++ K LPG+G +
Sbjct: 11 LNSDITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGEEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|332212619|ref|XP_003255417.1| PREDICTED: DNA polymerase lambda isoform 1 [Nomascus leucogenys]
gi|332212621|ref|XP_003255418.1| PREDICTED: DNA polymerase lambda isoform 2 [Nomascus leucogenys]
Length = 574
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPD 435
>gi|311705753|gb|ADQ01142.1| DNA polymerase lambda [Nomascus leucogenys]
Length = 574
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPD 435
>gi|426365955|ref|XP_004050031.1| PREDICTED: DNA polymerase lambda isoform 1 [Gorilla gorilla
gorilla]
gi|426365957|ref|XP_004050032.1| PREDICTED: DNA polymerase lambda isoform 2 [Gorilla gorilla
gorilla]
gi|311705737|gb|ADQ01134.1| DNA polymerase lambda [Gorilla gorilla]
Length = 575
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 194/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|311705741|gb|ADQ01136.1| DNA polymerase lambda [Trachypithecus francoisi]
Length = 574
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 38/405 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVHTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I +R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSV-----FIPNRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS---------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+H ++++ T++ + QA+ D E + E S E+
Sbjct: 153 LPPGTHEALLQTALSPPSPTRPVPPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 212
Query: 179 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 230
L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 LISGHYPTSLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 272
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 330
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 331 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 390
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 391 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 435
>gi|402881277|ref|XP_003904200.1| PREDICTED: DNA polymerase lambda isoform 4 [Papio anubis]
Length = 487
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ A +GD + P + + + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPASLEGDCD----------PSPAPVVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
A+ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 261 ARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|46250018|gb|AAH68529.1| POLL protein [Homo sapiens]
Length = 575
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQGACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|311705745|gb|ADQ01138.1| DNA polymerase lambda [Symphalangus syndactylus]
Length = 574
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 192/426 (45%), Gaps = 79/426 (18%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
+++ WL SL L E+
Sbjct: 100 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSIFIPSRYLDQPQPSKAEQHASIPPGT 156
Query: 102 SEDLYRIKLDPEGENIADRVLSQIQG---NGNTS----SDGESSHRKKIKSSTEDVE--- 151
E L + L P + R +S Q NT SD E+S ++ + S D+E
Sbjct: 157 HEALLQTALSPPPSST--RPVSPPQKAKEAANTQAQPVSDDEASDGEETQVSAADLEALI 214
Query: 152 --HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDL 209
H+ +GD E P + ++ + A S +++H
Sbjct: 215 SGHYPTSLEGDCE----------PSPASAVLDKWVCAQPSSQKATNH------------- 251
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 252 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 311
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H + V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 312 IIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 369
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D RIPR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 370 TQQAIGLKHYSDFLERIPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 429
Query: 390 VIMHPD 395
+I HPD
Sbjct: 430 LITHPD 435
>gi|114632455|ref|XP_001169987.1| PREDICTED: DNA polymerase lambda isoform 9 [Pan troglodytes]
Length = 487
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPD 348
>gi|75075271|sp|Q4R380.1|DPOLL_MACFA RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|67972190|dbj|BAE02437.1| unnamed protein product [Macaca fascicularis]
Length = 575
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I + L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSKYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ +T EAPN+ P+S + ++ T ++
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTK---EAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHI------TDPS---------LLYNPP-----DLNKNITEIFGKLINIYRA 226
D S H+ DPS + P + N +ITE L Y
Sbjct: 210 DLEALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|444731046|gb|ELW71413.1| DNA polymerase beta [Tupaia chinensis]
Length = 335
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K E+G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVEEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|296222127|ref|XP_002757050.1| PREDICTED: DNA polymerase beta [Callithrix jacchus]
gi|403303648|ref|XP_003942437.1| PREDICTED: DNA polymerase beta [Saimiri boliviensis boliviensis]
Length = 335
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNAGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|402881271|ref|XP_003904197.1| PREDICTED: DNA polymerase lambda isoform 1 [Papio anubis]
gi|402881273|ref|XP_003904198.1| PREDICTED: DNA polymerase lambda isoform 2 [Papio anubis]
gi|311705727|gb|ADQ01129.1| DNA polymerase lambda [Lophocebus albigena]
gi|311705743|gb|ADQ01137.1| DNA polymerase lambda [Papio anubis]
Length = 575
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ +T EAPN+ P+S + ++ T ++
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTK---EAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHI------TDPS---------LLYNPP-----DLNKNITEIFGKLINIYRA 226
D S H+ DPS + P + N +ITE L Y
Sbjct: 210 DLEALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TA+ Y++G R+L+D++++ SLT Q +GLK+++D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>gi|385721243|gb|AFI72772.1| mutant DNA polymerase beta, partial [Homo sapiens]
Length = 238
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|383872891|ref|NP_001244632.1| DNA polymerase beta [Macaca mulatta]
gi|355697903|gb|EHH28451.1| DNA polymerase beta [Macaca mulatta]
gi|355779661|gb|EHH64137.1| DNA polymerase beta [Macaca fascicularis]
gi|380788011|gb|AFE65881.1| DNA polymerase beta [Macaca mulatta]
gi|383419305|gb|AFH32866.1| DNA polymerase beta [Macaca mulatta]
gi|384947768|gb|AFI37489.1| DNA polymerase beta [Macaca mulatta]
Length = 335
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|84579323|dbj|BAE73095.1| hypothetical protein [Macaca fascicularis]
Length = 335
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|344281574|ref|XP_003412553.1| PREDICTED: DNA polymerase beta-like [Loxodonta africana]
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P +I+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHQIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLKKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ E+V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVEKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|332027963|gb|EGI68014.1| DNA polymerase beta [Acromyrmex echinatior]
Length = 337
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 127/211 (60%), Gaps = 16/211 (7%)
Query: 186 ASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK 245
A+ + + +H + D L D +N+++ N+Y+ +Y KA +
Sbjct: 6 ATGNANNPNHDLCD--FLMELADYERNVSK------NVYK-------YNAYRKAAGTLSA 50
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305
L +++S ++ K LPGIG + I E + TGKL KLE +KD+ ISL V GIGP
Sbjct: 51 LTERVKSGEEAKKLPGIGVKIAKKIDEFLQTGKLQKLEDIKKDDTNVAISLLARVSGIGP 110
Query: 306 ATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
A A++L E G +TL+DLK ++D LTH Q+LGLKYFDD + +IPR E+ Q+E++L+ A +E
Sbjct: 111 AKAKELVESGIKTLEDLKKHQDKLTHHQKLGLKYFDDFEKKIPRAEIAQIEKVLKNAIKE 170
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ ++ GSYRRGK GD+DV++ HPD
Sbjct: 171 LNSAYLVTICGSYRRGKEESGDIDVLVTHPD 201
>gi|60594068|pdb|1XSN|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap And Ddttp
gi|60594072|pdb|1XSP|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With Nicked Dna And Pyrophosphate
gi|149243099|pdb|2PFN|A Chain A, Na In The Active Site Of Dna Polymerase Lambda
gi|149243103|pdb|2PFO|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dupnpp
gi|149243107|pdb|2PFP|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dctp
gi|149243111|pdb|2PFQ|A Chain A, Manganese Promotes Catalysis In A Dna Polymerase
Lambda-Dna Crystal
gi|256599813|pdb|3HW8|A Chain A, Ternary Complex Of Dna Polymerase Lambda Of A Two
Nucleotide Gapped Dna Substrate With A C In The Scrunch
Site
gi|256599817|pdb|3HWT|A Chain A, Ternary Complex Of Dna Polymerase Lambda Bound To A Two
Nucleotide Gapped Dna Substrate With A Scrunched Da
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPD 395
+I HPD
Sbjct: 191 LITHPD 196
>gi|307178501|gb|EFN67190.1| DNA polymerase beta [Camponotus floridanus]
Length = 337
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 123/193 (63%), Gaps = 2/193 (1%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L + R + ++ + +Y KA + LP +++S ++ K LPGIG
Sbjct: 9 NANNPNQDLCDFLLELADFERNVSKNIYKYNAYRKAAGTLSALPERVKSGEEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ I E + TGKL KLE KDE ISL V GIGPA A++L + G +TL+DLK
Sbjct: 69 IKIAKKIDEFLQTGKLQKLEDIRKDENNIAISLLARVSGIGPAKAKELVDAGIKTLEDLK 128
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+++ LTH Q+LGLKYFDD + +IPR E+ Q+E +L+ A +E+ + ++ GSYRRGK
Sbjct: 129 KHQNMLTHHQKLGLKYFDDFEKKIPRAEIIQIEGILRDAMKEISHDYLVTICGSYRRGKE 188
Query: 383 SCGDLDVVIMHPD 395
GD+DV+I HPD
Sbjct: 189 ESGDIDVLITHPD 201
>gi|291409035|ref|XP_002720811.1| PREDICTED: DNA-directed DNA polymerase beta [Oryctolagus cuniculus]
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAVHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|197725066|pdb|3C5F|A Chain A, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
gi|197725070|pdb|3C5F|B Chain B, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPD 395
+I HPD
Sbjct: 191 LITHPD 196
>gi|194709142|pdb|3C5G|A Chain A, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
gi|194709146|pdb|3C5G|B Chain B, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPD 395
+I HPD
Sbjct: 191 LITHPD 196
>gi|431902223|gb|ELK08724.1| DNA polymerase beta [Pteropus alecto]
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|60594052|pdb|1XSL|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594056|pdb|1XSL|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594060|pdb|1XSL|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594064|pdb|1XSL|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|93278829|pdb|2BCQ|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dtmp
gi|93278833|pdb|2BCR|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp
gi|93278837|pdb|2BCS|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dcmp
gi|93278841|pdb|2BCU|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp And A T:t Mismatch
gi|93278845|pdb|2BCV|A Chain A, Dna Polymerase Lambda In Complex With Dttp And A Dna
Duplex Containing An Unpaired Dtmp
gi|114794130|pdb|2GWS|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794131|pdb|2GWS|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794132|pdb|2GWS|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794133|pdb|2GWS|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
Length = 335
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPD 395
+I HPD
Sbjct: 191 LITHPD 196
>gi|73979125|ref|XP_532790.2| PREDICTED: DNA polymerase beta isoform 1 [Canis lupus familiaris]
Length = 335
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|77736473|ref|NP_001029936.1| DNA polymerase beta [Bos taurus]
gi|109893767|sp|Q27958.3|DPOLB_BOVIN RecName: Full=DNA polymerase beta
gi|73587414|gb|AAI03230.1| Polymerase (DNA directed), beta [Bos taurus]
gi|296472338|tpg|DAA14453.1| TPA: DNA polymerase beta [Bos taurus]
gi|440901046|gb|ELR52049.1| DNA polymerase beta [Bos grunniens mutus]
Length = 335
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|395857477|ref|XP_003801118.1| PREDICTED: DNA polymerase beta [Otolemur garnettii]
Length = 335
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|417399140|gb|JAA46600.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 335
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|355712605|gb|AES04404.1| polymerase , beta [Mustela putorius furo]
Length = 334
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|312597477|pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna
Length = 335
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+L V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINLLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|335304364|ref|XP_003134280.2| PREDICTED: DNA polymerase beta-like [Sus scrofa]
Length = 248
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|46015602|pdb|1RZT|A Chain A, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015603|pdb|1RZT|E Chain E, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015604|pdb|1RZT|I Chain I, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015605|pdb|1RZT|M Chain M, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
Length = 331
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 9 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 68
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 69 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 126
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 127 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 186
Query: 390 VIMHPD 395
+I HPD
Sbjct: 187 LITHPD 192
>gi|351709536|gb|EHB12455.1| DNA polymerase beta [Heterocephalus glaber]
Length = 335
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDMSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HPD
Sbjct: 191 MDVLLTHPD 199
>gi|388325745|pdb|3UQ2|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Rcmp Inserted Opposite A
Templating G And Damp Inserted Opposite A Templating T
At The Primer Terminus.
gi|394986423|pdb|4FO6|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With A Datp Analog Opposite A
Templating T And An Rcmp At The Primer Terminus
Length = 329
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 390 VIMHPD 395
+I HPD
Sbjct: 190 LITHPD 195
>gi|118101412|ref|XP_424407.2| PREDICTED: DNA polymerase beta [Gallus gallus]
Length = 335
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI + P +I S + K L G+G +
Sbjct: 11 LNQGITDFLMELANYERNVSRAIHKYNAYRKAASVISRYPSRIRSGAEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL KNE
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K + V P I GS+RRG S GD
Sbjct: 131 KLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVKNVDPNYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|296278520|pdb|3MGH|A Chain A, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278524|pdb|3MGH|C Chain C, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278528|pdb|3MGI|A Chain A, Ternary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|320089902|pdb|3PML|A Chain A, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|320089903|pdb|3PML|B Chain B, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|321159982|pdb|3PMN|A Chain A, Ternary Crystal Structure Of Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus With Mn2+ In
The Active Site
gi|321159986|pdb|3PNC|A Chain A, Ternary Crystal Structure Of A Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus And Sodium At
Catalytic Metal Site
gi|388325731|pdb|3UPQ|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With An Ratp Analog Opposite A
Templating T.
gi|388325735|pdb|3UQ0|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Ramp At The Primer Terminus
Length = 329
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 390 VIMHPD 395
+I HPD
Sbjct: 190 LITHPD 195
>gi|21729749|ref|NP_035260.1| DNA polymerase beta [Mus musculus]
gi|48428077|sp|Q8K409.3|DPOLB_MOUSE RecName: Full=DNA polymerase beta
gi|21359795|gb|AAM49616.1|AF513911_1 DNA polymerase beta [Mus musculus]
gi|26345958|dbj|BAC36630.1| unnamed protein product [Mus musculus]
gi|38511640|gb|AAH60998.1| Polymerase (DNA directed), beta [Mus musculus]
gi|74145064|dbj|BAE27405.1| unnamed protein product [Mus musculus]
gi|74191657|dbj|BAE30399.1| unnamed protein product [Mus musculus]
gi|148700936|gb|EDL32883.1| polymerase (DNA directed), beta [Mus musculus]
Length = 335
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>gi|295322047|pdb|3MDA|A Chain A, Dna Polymerase Lambda In Complex With Arac
gi|295322051|pdb|3MDC|A Chain A, Dna Polymerase Lambda In Complex With Dfdctp
Length = 325
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 3 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 62
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 63 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 120
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 121 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 180
Query: 390 VIMHPD 395
+I HPD
Sbjct: 181 LITHPD 186
>gi|256599821|pdb|3HX0|A Chain A, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599825|pdb|3HX0|F Chain F, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599829|pdb|3HX0|K Chain K, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599833|pdb|3HX0|P Chain P, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
Length = 335
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRAAGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPD 395
+I HPD
Sbjct: 191 LITHPD 196
>gi|50550535|ref|XP_502740.1| YALI0D12364p [Yarrowia lipolytica]
gi|49648608|emb|CAG80928.1| YALI0D12364p [Yarrowia lipolytica CLIB122]
Length = 710
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 205 NPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
+P D N N E+ +L+ Y + R+ SY KA+ V+++ P KI + + LPGI
Sbjct: 383 DPVDKNPNWKTIEVLSRLLKYYEDKHDQWRAQSYRKALNVLKRQPKKITTKKEAVKLPGI 442
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G S+ IQEIV T L L + D V+ SLF +WG+G ATA+K Y++G+RTLDD+
Sbjct: 443 GDSIGSKIQEIVETNGLKLLNVTKLDTSVKVTSLFEGIWGVGKATARKWYKEGYRTLDDI 502
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ +LT +Q++GL+++DD + RIPR EV + ++QKA E+ PEV GSYRRG A
Sbjct: 503 AKKATLTPNQKVGLEHYDDFQERIPRDEVTRHFMVVQKAAHEIDPEVDAHIMGSYRRGAA 562
Query: 383 SCGDLDVVI 391
S GD+D++
Sbjct: 563 SSGDIDMIF 571
>gi|417402918|gb|JAA48289.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 575
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 186/410 (45%), Gaps = 39/410 (9%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ 71
+ G + +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 37 ARGWLSSLRAHVVPTGIGRARAELFEKQIVQHGGQIHAVQAPGVTHIVVDDGMDCERALR 96
Query: 72 QVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ----- 126
+ L +++ WL SL L E+ D + I DR L+Q Q
Sbjct: 97 LLRLPRLPP-GAQLVKSAWL--SLCLQERRLVDTAEFSI-----FIPDRCLAQPQLSKAD 148
Query: 127 -GNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLST 185
+ E+ R + + ++ ++ + SS+ +S
Sbjct: 149 QDSATPPGACEALLRTAFSPPPTPARPVSPPQRTEEAASSRAQPGSDDGSSDGEETWVSA 208
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A S + P P + N +ITE L Y
Sbjct: 209 ADLEALISGRYPIPPEGDGEPCPAPEGLGKWVCAQPSSQKVTNHNAHITEKLEVLAKAYS 268
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 269 VQGDKWRALGYTKAINALKSFHKPVASYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI 328
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G RTL+D++++ SLT Q +GLK+++D R
Sbjct: 329 --SDSVPILELFSNIWGAGTKTAQMWYHQGFRTLEDIRSKASLTTQQAIGLKHYNDFLER 386
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
IPR E ++E+ ++ + + + P ++ + GSYRRGK +CGD+DV++ HPD
Sbjct: 387 IPREEATEIEQTVRGSAQGLNPGLLCVACGSYRRGKVTCGDVDVLLTHPD 436
>gi|345307659|ref|XP_001511409.2| PREDICTED: hypothetical protein LOC100080532 [Ornithorhynchus
anatinus]
Length = 1170
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 114/186 (61%), Gaps = 2/186 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ SY KAI ++ + S + +PGIGK M +
Sbjct: 349 NPHITEKLEVLARAYTVQGDKWRALSYAKAINALKSFHKPVSSLQEACRIPGIGKRMAEK 408
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EIV +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ +LT
Sbjct: 409 IMEIVESGHLRKLDHL--SESVPVLELFSNIWGAGAKTAQMWYQQGFRSLEDVRSKATLT 466
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK+++D R+PR E ++E ++ A + + P ++ + GSYRRGKA+CGD+DV
Sbjct: 467 SQQVVGLKHYEDFLDRMPREEAAEIEETVRAAAQVLNPGLLAVSCGSYRRGKATCGDVDV 526
Query: 390 VIMHPD 395
++ HPD
Sbjct: 527 LVTHPD 532
>gi|47220317|emb|CAG03351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 521
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 17/202 (8%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAI--------PV----IEKLPFKIESADQ 255
+ NK+IT+ L Y G+ R+ SY KA+ PV + + + A Q
Sbjct: 189 NFNKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPVTSYQVSAISTNYQEACQ 248
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ PGIGKSM D I EI+ +G L KL+H E V + LF +WG G TAQ Y++G
Sbjct: 249 I---PGIGKSMADKIDEIMESGHLRKLDHI--GEAVPVLELFSNIWGAGAKTAQLWYQQG 303
Query: 316 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
RTL+D++ + L+ +Q++GLK+++D R+PR E +E++++ A V P ++ + G
Sbjct: 304 FRTLEDIRTKAHLSSTQKIGLKHYEDFLDRMPRGEAAAIEKVVKDAALAVDPHLVAMACG 363
Query: 376 SYRRGKASCGDLDVVIMHPDRK 397
SYRRGKA+CGD+DV+I HPD K
Sbjct: 364 SYRRGKATCGDVDVLISHPDGK 385
>gi|339717642|pdb|3RH5|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Deoxynucleotide (Dctp)
gi|339717646|pdb|3RH6|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Ribonucleotide (Rctp)
Length = 335
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|190156|gb|AAA60133.1| beta-polymerase [Homo sapiens]
Length = 335
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|4505931|ref|NP_002681.1| DNA polymerase beta [Homo sapiens]
gi|114619950|ref|XP_001143904.1| PREDICTED: DNA polymerase beta isoform 3 [Pan troglodytes]
gi|332241022|ref|XP_003269687.1| PREDICTED: DNA polymerase beta [Nomascus leucogenys]
gi|397505584|ref|XP_003823336.1| PREDICTED: DNA polymerase beta [Pan paniscus]
gi|544186|sp|P06746.3|DPOLB_HUMAN RecName: Full=DNA polymerase beta
gi|1943095|pdb|9ICG|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943098|pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943101|pdb|9ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943104|pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
gi|1943107|pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Artificial Mother Liquor
gi|1943110|pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Pyrophosphate And Mncl2
gi|1943113|pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
gi|1943116|pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mgcl2
gi|1943119|pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Dttp And Mgcl2
gi|1943122|pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943125|pdb|9ICQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943128|pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of
Dctp And Mncl2
gi|1943131|pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mncl2
gi|1943134|pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyguanosine-5'-Triphosphate, Soaked In The Presence
Of Dgtp And Mncl2
gi|1943137|pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943140|pdb|9ICV|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943143|pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
gi|1943146|pdb|9ICX|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna (non Gapped Dna Only)
gi|1943149|pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven
Base Pairs Of Dna (Non Gapped Dna Only)
gi|1943152|pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
gi|1943155|pdb|8ICC|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (no 5'-phosphate)
gi|1943158|pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
gi|1943161|pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
gi|1943164|pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943167|pdb|8ICH|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943170|pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943173|pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mgcl2
gi|1943176|pdb|8ICK|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
gi|1943179|pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
gi|1943182|pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
gi|1943185|pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943188|pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943191|pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943194|pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
gi|1943197|pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943200|pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943203|pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943206|pdb|8ICU|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943209|pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943212|pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943215|pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943218|pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mncl2
gi|1943221|pdb|8ICZ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
gi|1943224|pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The
Presence Of Datp(Alpha)s And Mncl2
gi|1943227|pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Cocl2
gi|1943230|pdb|9ICC|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Crcl3
gi|1943233|pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
gi|1943236|pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943239|pdb|1ZQQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943242|pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Nicl2
gi|1943245|pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
gi|1943248|pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
gi|1943257|pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cacl2
gi|1943260|pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
gi|1943263|pdb|7ICG|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Cdcl2
gi|1943266|pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cocl2
gi|1943269|pdb|7ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
gi|1943272|pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
gi|1943275|pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Mgcl2
gi|1943278|pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
gi|1943281|pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
gi|1943284|pdb|7ICN|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Nicl2
gi|1943287|pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943290|pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
gi|1943293|pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943296|pdb|7ICR|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Zncl2
gi|1943299|pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943302|pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2 And Mgcl2
gi|1943305|pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
gi|1943308|pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
gi|1943311|pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
gi|1943315|pdb|1ZQA|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
gi|1943318|pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
gi|1943321|pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
gi|1943324|pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
gi|1943327|pdb|1ZQE|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(saturated Solution)
gi|1943330|pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
gi|1943333|pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
gi|1943336|pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
gi|1943339|pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
gi|1943342|pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943345|pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
gi|1943348|pdb|1ZQL|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943351|pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
gi|1943354|pdb|1ZQN|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943357|pdb|1ZQO|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943360|pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
gi|2392196|pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX
gi|2392200|pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
gi|2392204|pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
gi|28373759|pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp
gi|28373763|pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired
With Dctp
gi|56966095|pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Adenine And Incoming
Cytidine
gi|56966099|pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Thymidine And Incoming
Cytidine
gi|75765763|pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus
gi|75765767|pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus With Dgtp
gi|99032272|pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate
And Ddctp With Sodium In The Catalytic Site
gi|99032273|pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta
gi|99032277|pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Magnesium In The Catalytic Site
gi|118138264|pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol
Epoxide Adducted Guanine Base
gi|126030823|pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Difluoromethylene Triphosphate
gi|126030827|pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Methylene Triphosphate
gi|146387680|pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran
(abasic Site) Containing Dna
gi|164519479|pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Monofluoromethylene Triphosphate
gi|188595971|pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Manganese In The Active Site
gi|188595975|pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp
Mismatch In The Active Site
gi|188595979|pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp
Mismatch In The Active Site
gi|258588692|pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped
Dna
gi|258588696|pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic
Site (Thf) In The Gapped Dna
gi|258588700|pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An
Abasic Site (Thf): Dapcpp Mismatch
gi|297342962|pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dichloro Methyl Triphosphate
gi|297342966|pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochloromethy Triphosphate
gi|297342970|pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monomethyl Meth Triphosphate
gi|297342974|pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monobromo Methy Triphosphate
gi|297342978|pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dimethyl Methyl Triphosphate
gi|297342982|pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Methyl M Triphosphate
gi|297342986|pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Chloro M Triphosphate
gi|297787720|pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base
A And 8oxodgtp In The Active Site With A Dideoxy
Terminated Primer
gi|317455186|pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dtmp(Cf2)p(Cf2)p
gi|339717641|pdb|3RH4|A Chain A, Dna Polymerase Beta With A Dideoxy-Terminated Primer With
An Incoming Ribonucleotide (Rctp)
gi|372466921|pdb|3RJE|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position
gi|372466925|pdb|3RJF|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg At Template Position Paired With
Non-Hydrolyzable Datp Analog (Dapcpp)
gi|372466929|pdb|3RJG|A Chain A, Binary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:da Base-Pair At Primer Terminus
gi|372466933|pdb|3RJH|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg:da At Primer Terminus And
Dg:dcmp(Cf2)ppin The Active Site
gi|372466937|pdb|3RJI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position Paired With
Non-Hydrolyzable Dctp Analog (Dcmp(Cf2)pp)
gi|372466941|pdb|3RJJ|A Chain A, Ternary Complex Crystal Structure Of Dna Polymerase Beta
With Template 8odg Provides Insight Into Mutagenic
Lesion Bypass
gi|372466945|pdb|3RJK|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:dc Base Pair At Primer Terminus And
Dg:dcmp(Cf2)pp In The Active Site
gi|380764187|pdb|3TFR|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cf2)pp In The Active
Site
gi|380764191|pdb|3TFS|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cfh)pp In The Active
Site: Stereoselective Binding Of (S) Isomer
gi|390981022|pdb|4DO9|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Stereoselective
Binding Of R-Isomer
gi|390981026|pdb|4DOA|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Non-Interactive
Binding Of S-Isomer
gi|390981030|pdb|4DOB|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:
Stereoselective Binding Of R-Isomer
gi|390981034|pdb|4DOC|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:binding Of
S-Isomer
gi|19550959|gb|AAL91594.1|AF491812_1 DNA polymerase beta [Homo sapiens]
gi|292397|gb|AAB59441.1| beta-polymerase [Homo sapiens]
gi|1060896|dbj|BAA06099.1| DNA polymerase beta [Homo sapiens]
gi|49168492|emb|CAG38741.1| POLB [Homo sapiens]
gi|49456561|emb|CAG46601.1| POLB [Homo sapiens]
gi|71682446|gb|AAI00289.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|76827621|gb|AAI06910.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|119583625|gb|EAW63221.1| polymerase (DNA directed), beta [Homo sapiens]
gi|189054625|dbj|BAG37475.1| unnamed protein product [Homo sapiens]
gi|208967076|dbj|BAG73552.1| polymerase (DNA directed) beta [synthetic construct]
gi|410209680|gb|JAA02059.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410259830|gb|JAA17881.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410333957|gb|JAA35925.1| polymerase (DNA directed), beta [Pan troglodytes]
Length = 335
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|60827766|gb|AAX36812.1| polymerase beta [synthetic construct]
Length = 336
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|297682785|ref|XP_002819090.1| PREDICTED: DNA polymerase beta [Pongo abelii]
Length = 335
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|429544471|pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
gi|429544475|pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
gi|429544479|pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
gi|429544483|pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
gi|429544487|pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|429544488|pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|442570775|pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
gi|442570779|pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
gi|442570783|pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|229597882|pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 2 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 61
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 62 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 121
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 122 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 181
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 182 MDVLLTHP 189
>gi|63101370|gb|AAH95054.1| Polymerase (DNA directed), beta [Danio rerio]
gi|182890442|gb|AAI64375.1| Polb protein [Danio rerio]
Length = 339
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 191 IDILLTHPD 199
>gi|62079061|ref|NP_001014190.1| DNA polymerase lambda [Rattus norvegicus]
gi|81883396|sp|Q5RKI3.1|DPOLL_RAT RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|55715673|gb|AAH85841.1| Polymerase (DNA directed), lambda [Rattus norvegicus]
gi|149040271|gb|EDL94309.1| similar to DNA polymerase lambda [Rattus norvegicus]
Length = 573
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 186/407 (45%), Gaps = 28/407 (6%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
L+ + L +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLPQLPP-GAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQD 149
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
+ R + S K + ++ + +S+ +S+A
Sbjct: 150 ASAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADL 209
Query: 189 SPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALG 228
S H+ T P P + N +ITE L Y G
Sbjct: 210 QALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQG 269
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H
Sbjct: 270 DKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHI--S 327
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
+ V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 328 DSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPR 387
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD
Sbjct: 388 EEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPD 434
>gi|51468008|ref|NP_001003879.1| DNA polymerase beta [Danio rerio]
gi|49619119|gb|AAT68144.1| DNA polymerase beta [Danio rerio]
gi|190337954|gb|AAI62397.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 191 IDILLTHPD 199
>gi|314932539|gb|ADT64454.1| DNA polymerase beta [Ailurus fulgens]
Length = 313
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 1 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 60
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 61 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 120
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 121 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 180
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 181 MDVLLTHP 188
>gi|9910500|ref|NP_064416.1| DNA polymerase lambda [Mus musculus]
gi|20138052|sp|Q9QXE2.1|DPOLL_MOUSE RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase kappa
gi|6746425|gb|AAF27553.1|AF176099_1 DNA polymerase lambda [Mus musculus]
gi|6688681|emb|CAB65241.1| DNA polymerase lambda [Mus musculus]
gi|13435834|gb|AAH04767.1| Polymerase (DNA directed), lambda [Mus musculus]
gi|148710011|gb|EDL41957.1| polymerase (DNA directed), lambda [Mus musculus]
Length = 573
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 185/410 (45%), Gaps = 38/410 (9%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+ + +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLP-QLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKS 146
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLST 185
++ + +T + + T + +SSE T+ +S+
Sbjct: 147 GQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSS 206
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A + H+ T P P + N +ITE L Y
Sbjct: 207 ADLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYS 266
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 267 VQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI 326
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R
Sbjct: 327 --SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDR 384
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 385 MPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPD 434
>gi|77416689|sp|Q6DRD3.2|DPOLB_DANRE RecName: Full=DNA polymerase beta
Length = 336
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 190 IDILLTHPD 198
>gi|206276|gb|AAA41900.1| polymerase beta [Rattus norvegicus]
Length = 318
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
M+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 141 MQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 182
>gi|157423583|gb|AAI53576.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 191 IDILLTHPD 199
>gi|126303417|ref|XP_001373104.1| PREDICTED: DNA polymerase beta [Monodelphis domestica]
Length = 335
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT+ +L N R + + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNAGITDFLTELANYERNVNQAIHKYNAYRKAASVIAKYPTKIKSGAEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E ++TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNE+
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEN 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GL+YFDD + RIPR E+ QM+ ++ ++V P+ I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLRYFDDFEKRIPREEMLQMQDIVLNEVKKVDPKYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+D+++ HP
Sbjct: 191 MDILLTHP 198
>gi|432873436|ref|XP_004072215.1| PREDICTED: DNA polymerase beta-like [Oryzias latipes]
Length = 338
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G + +
Sbjct: 12 NEGITDFLIELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 327
I E + TGKL KLE D+ +I+ V GIGPA A+K +E+G +TLDDLK E
Sbjct: 72 KIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLDDLKKVEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GL+YF++ + RIPR E+EQME L+ E++ PE I GSYRRG AS GD+
Sbjct: 132 LNHHQKIGLRYFEEFEKRIPRAEMEQMEALIIAELEKIDPEYIGTICGSYRRGAASSGDI 191
Query: 388 DVVIMHPD 395
D+++ HP+
Sbjct: 192 DILLTHPN 199
>gi|410956338|ref|XP_003984799.1| PREDICTED: DNA polymerase beta [Felis catus]
Length = 335
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta]
Length = 341
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 4/193 (2%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L + R + ++ + +Y KA + L +++S + K LPGIG
Sbjct: 9 NANNPNQDLCDFLMELADYERNVSKNVYKYNAYRKAAGTLGALTERVQSGKEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + I E + TGKL KLE +KDE +ISL V GIGPA A++L E G +TL+DLK
Sbjct: 69 EKIAKKIDEFLQTGKLQKLE--DKDETNVSISLLARVSGIGPAKAKELVEAGIKTLEDLK 126
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+++ LTH Q+LGLKYFDD + +IPR E+ ++E++L+KA +E+ +I GSYRRGK
Sbjct: 127 KHQNKLTHHQKLGLKYFDDFEKKIPRAEIVEIEKILKKAIKELNSAYLITICGSYRRGKE 186
Query: 383 SCGDLDVVIMHPD 395
GD+DV++ HPD
Sbjct: 187 ESGDIDVLVTHPD 199
>gi|374258478|gb|AEZ01785.1| DNA polymerase beta, partial [Pogona vitticeps]
Length = 335
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLSELANYERNVNRAIHKYNAYRKAASVISKYPTKIKSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+ LK NE
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFVEEGIKTLEGLKKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H QR+GLKYF+D + RIPR E+ +M+ ++ + +EV P I GS+RRG S GD+
Sbjct: 132 LNHHQRIGLKYFEDFEKRIPREEMLEMQEIVLREVKEVDPRYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 192 DILLTHPD 199
>gi|551677|gb|AAB60688.1| DNA polymerase beta [Homo sapiens]
Length = 335
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT+ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDKLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|148232172|ref|NP_001081643.1| DNA polymerase beta [Xenopus laevis]
gi|6015014|sp|O57383.3|DPOLB_XENLA RecName: Full=DNA polymerase beta
gi|2661842|emb|CAA75741.1| DNA polymerase beta [Xenopus laevis]
gi|76780321|gb|AAI06330.1| PolB protein [Xenopus laevis]
Length = 334
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 192 DILLTHPD 199
>gi|62898806|dbj|BAD97257.1| polymerase (DNA directed), beta variant [Homo sapiens]
Length = 335
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV+ HP
Sbjct: 191 MDVLPTHP 198
>gi|374258480|gb|AEZ01786.1| DNA polymerase beta, partial [Larus glaucescens]
Length = 315
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI + P KI S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAVHKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL LE +D+ +I+L V G+GPA A+K E+G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRXLEKIRQDDTSASINLLTRVTGVGPAAARKFVEEGIKTLEDLRKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LTH QR+GLKYF+D + RIPR E+ QM+ ++ + +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLEEVKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHP 394
DV++ HP
Sbjct: 192 DVLLTHP 198
>gi|387015596|gb|AFJ49917.1| DNA polymerase beta-like [Crotalus adamanteus]
Length = 335
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT++ +L N + + + +Y KA VI K P KI+S + K L GIG + +
Sbjct: 12 NQAITDLLSELANYEKNVNRAIHKYNAYRKAASVISKYPSKIKSGSEAKKLDGIGTKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL K+E +D+ +I+L V GIGPA A+KL ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKIEKIRQDDTSSSINLLTRVSGIGPAAARKLVDEGIKTLEDLKKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H QR+GLKYF D + RIPR E+ +M+ ++ +V P I GS+RRG S GD+
Sbjct: 132 LNHHQRIGLKYFKDFEKRIPRKEMLEMQDVVLSEVNKVDPAYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 192 DILLTHPD 199
>gi|106880497|ref|NP_001006894.2| DNA-directed DNA polymerase beta [Xenopus (Silurana) tropicalis]
gi|89272500|emb|CAJ82346.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 115/189 (60%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYFDD + RIPR E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRIPRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HPD
Sbjct: 191 MDVLLTHPD 199
>gi|224080955|ref|XP_002186553.1| PREDICTED: DNA polymerase beta-like [Taeniopygia guttata]
Length = 335
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI + P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAIHKYNAYRKAASVISRYPSKIQSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 327
I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL+ E
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKIEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEIKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHP 394
DV++ HP
Sbjct: 192 DVLLTHP 198
>gi|348557620|ref|XP_003464617.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Cavia
porcellus]
Length = 335
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIXKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLTEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ H +
Sbjct: 191 MDVLLTHAN 199
>gi|301765968|ref|XP_002918406.1| PREDICTED: DNA polymerase beta-like [Ailuropoda melanoleuca]
Length = 335
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+ G S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFXXGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|449270885|gb|EMC81533.1| DNA polymerase beta, partial [Columba livia]
Length = 315
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA VI + P KI S + K L G+G + + I E ++TGKL K
Sbjct: 8 NVNRAI---HKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 64
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGPA A+K E+G +TL+DL+ NE LTH QR+GLKYF+
Sbjct: 65 LEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRRNEHKLTHHQRIGLKYFE 124
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+DV+I HP
Sbjct: 125 DFEKRIPREEMLQMQEIVLKEVQKLDPNYIATVCGSFRRGAESSGDMDVLITHP 178
>gi|55845900|gb|AAV66968.1| DNA polymerase beta [Canis lupus familiaris]
Length = 318
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
M+ ++ ++V E I GS+RRG S GD+DV++ HP
Sbjct: 141 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHP 181
>gi|426256602|ref|XP_004021927.1| PREDICTED: DNA polymerase beta [Ovis aries]
Length = 328
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 31 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 90
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 91 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 150
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
M+ ++ ++V E I GS+RRG S GD+DV++ HP
Sbjct: 151 MQDIVLSEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHP 191
>gi|432099929|gb|ELK28823.1| DNA polymerase beta [Myotis davidii]
Length = 376
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 27/245 (11%)
Query: 169 APNSPMSSESLTNTLST--ASASPDF----SSHHITDPSLLY-----------NP-PDLN 210
+P SP++ S+T T S+ +PDF + T P+ +P P L+
Sbjct: 3 SPTSPLTGFSVTFTTSSFYPCLTPDFRGGTAFRPCTSPAFRVHVGSAQRSAGGDPLPSLS 62
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
+ L+ Y D + KA VI K P KI+S + K LPG+G + + I
Sbjct: 63 RQFLPF---LVASYTGYVRDSK-----KAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKI 114
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLT 329
E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED L
Sbjct: 115 DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNEDKLN 174
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD+DV
Sbjct: 175 HHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDV 234
Query: 390 VIMHP 394
++ HP
Sbjct: 235 LLTHP 239
>gi|51860136|gb|AAU11318.1| DNA polymerase beta [Xiphophorus maculatus]
gi|51860138|gb|AAU11319.1| DNA polymerase beta [Xiphophorus maculatus]
Length = 337
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI++ ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTIAKYPNKIKNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TLDDLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLDDLKKVEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+E+ME L+ +++ PE I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLKYFEEFEKRIPRVEMEKMEVLILGELKKIDPEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HP+
Sbjct: 191 IDILLTHPN 199
>gi|348527146|ref|XP_003451080.1| PREDICTED: DNA polymerase beta-like [Oreochromis niloticus]
Length = 336
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI+S ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPHKIKSGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+E+ME L+ E+V E I GSYRRG AS GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRAEMEKMETLILGELEKVDQEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HP+
Sbjct: 191 IDILLTHPN 199
>gi|198413629|ref|XP_002128462.1| PREDICTED: similar to DNA polymerase beta [Ciona intestinalis]
Length = 326
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 107/174 (61%), Gaps = 4/174 (2%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA +S +Y KA I + +I+S D+ + L G+G + D I E + TGKL K
Sbjct: 28 NVNRAF---HKSNAYRKAASSISRFGKEIKSGDEARKLEGVGAKISDKINEFLKTGKLEK 84
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFD 340
LE KDE + ISLF + G+GP A+KL E G ++L+DLKN + L H Q +G+KYFD
Sbjct: 85 LEKVRKDETSQIISLFTRISGVGPVAARKLMELGFKSLEDLKNNSEKLNHHQNIGVKYFD 144
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
D + RIPR E+E++E ++ V P+ + GSYRRG S GD+DV++ HP
Sbjct: 145 DFEKRIPREEMEKLEGMVVGKVTGVDPKFVATVCGSYRRGATSSGDIDVLVTHP 198
>gi|196009372|ref|XP_002114551.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
gi|190582613|gb|EDV22685.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
Length = 342
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK+IT+I L Y LG+ R Y KAI I+ P +I + ++ + +P IGK + D
Sbjct: 15 NKHITDILEILQKKYENLGDQWRVKGYTKAISSIKNYPREITTREEAEAIPNIGKRLADK 74
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI++ G L KL++ + D + +++F ++WG GPATA +G TLDD++ + L
Sbjct: 75 IWEIISCGHLRKLDYMDNDVQT-ALNVFTKIWGAGPATAHNWIAQGLYTLDDIRAKAKLN 133
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+ Q +GLKY+DD RIPR EV ++E ++++ + + ++ GSYRR K +CGD+D+
Sbjct: 134 YHQSIGLKYYDDFNERIPRAEVVEIEAVIREEATAIELGLEVITCGSYRREKPTCGDVDI 193
Query: 390 VIMHPD 395
+I HP+
Sbjct: 194 LISHPN 199
>gi|260619563|gb|ACX47468.1| DNA polymerase beta [Pongo pygmaeus]
Length = 296
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 17 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 76
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF D + RIPR E+ Q
Sbjct: 77 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQ 136
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
M+ ++ ++V E I GS+RRG S GD+DV++ HP
Sbjct: 137 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHP 177
>gi|350412147|ref|XP_003489556.1| PREDICTED: DNA polymerase beta-like [Bombus impatiens]
Length = 336
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + + + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSNNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLNTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + RIPR E+EQ+E++++ + ++ E II GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKRIPRKEIEQIEKIIKDSIVKLNKEYIITICGSYRRGKEESGDI 193
Query: 388 DVVIMHP 394
DV++ HP
Sbjct: 194 DVLLTHP 200
>gi|73998288|ref|XP_861980.1| PREDICTED: DNA polymerase lambda isoform 3 [Canis lupus familiaris]
Length = 484
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 98/145 (67%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 203 EETQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQM 260
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G+RTL+D++N+ SLT Q +GLK++DD RIPR E ++E+ ++K+ + P ++
Sbjct: 261 WYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVRKSAQAFNPGLL 320
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV++ HPD
Sbjct: 321 CVACGSYRRGKATCGDVDVLLTHPD 345
>gi|346974983|gb|EGY18435.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 815
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 114/182 (62%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R +Y K I ++++ KI +A + LPG+G + D
Sbjct: 455 NARTIEMLQHMADYYGRINDTWRPIAYRKVISLLKRQTRKIATAAEAIRLPGVGARLADK 514
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ LT
Sbjct: 515 IEEIVTTDRLRRLEHAERDPADETLQQFVRIYGVGNAQASRWIAQGHRTLDDLRAGAVLT 574
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR EVE + +++ A + P+V ++ GGSYRRG AS GD+D+
Sbjct: 575 ANQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPDVELIVGGSYRRGAASSGDIDL 634
Query: 390 VI 391
++
Sbjct: 635 IV 636
>gi|327287112|ref|XP_003228273.1| PREDICTED: DNA polymerase beta-like [Anolis carolinensis]
Length = 335
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NDGITDFLTELANYERNVNRAIHKYNAYRKAASVISKYPSKIKSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL KLE +D+ +I+ V GIGPA A+K ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPAAARKFVDEGIKTLEDLKKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + RIPR+E+ +M+ ++ +EV I GS+RRG S GD+
Sbjct: 132 LNHHQQIGLKYFEDFEKRIPRNEMLEMQEIVLNEVKEVDSRYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 192 DILLTHPD 199
>gi|134076871|emb|CAK45280.1| unnamed protein product [Aspergillus niger]
Length = 705
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 369 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 428
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 429 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 488
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 489 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 548
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 549 GDIDLLITKPD 559
>gi|383859756|ref|XP_003705358.1| PREDICTED: DNA polymerase beta-like [Megachile rotundata]
Length = 337
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 120/187 (64%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAAGTLGSLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E ++TGKL KLE KDE I+L V GIGPA A++L + G +TL+DLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPAKAKELVDNGIKTLNDLKKHQNK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + +IPR E+EQ+E++++ A ++ E I+ GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKKIPREEIEQIEKIMKDAVTKLSNEYILTICGSYRRGKNESGDI 193
Query: 388 DVVIMHP 394
DV++ HP
Sbjct: 194 DVLLTHP 200
>gi|49257724|gb|AAH74537.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYFDD + RI R E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRITRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HPD
Sbjct: 191 MDVLLTHPD 199
>gi|380025572|ref|XP_003696544.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Apis
florea]
Length = 337
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 120/192 (62%), Gaps = 2/192 (1%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L N R + ++ + +Y KA + L +I+S + K LPGIG
Sbjct: 9 NTGNPNQDLCDFLIELANYERNVSKNIYKYNAYRKAAGTLSGLTERIKSGQEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL- 322
+ + I E ++TGKL KLE KDE I+L V GIGPA A++L G +TLDDL
Sbjct: 69 EKIAKKIDEFLSTGKLQKLEDINKDENNIAINLLTRVSGIGPAKAKELVTAGIKTLDDLK 128
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
K+E+ L H Q++GLKYF+D + RIPR E+EQ+E++++ ++ E II+ GSYRR K
Sbjct: 129 KHEEKLNHHQKIGLKYFEDFEKRIPRKEIEQIEKIMKDIIADLSEEYIIIICGSYRREKE 188
Query: 383 SCGDLDVVIMHP 394
GD+DV++ +P
Sbjct: 189 DSGDIDVLLTYP 200
>gi|410923010|ref|XP_003974975.1| PREDICTED: DNA polymerase beta-like [Takifugu rubripes]
Length = 336
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFEEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GL YF++ + RIPR E+E+ME L+ +++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRVEMEKMESLILGELKKIDTEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 191 IDILLTHPD 199
>gi|317030862|ref|XP_001392360.2| DNA polymerase POL4 [Aspergillus niger CBS 513.88]
Length = 708
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 552 GDIDLLITKPD 562
>gi|347837705|emb|CCD52277.1| hypothetical protein [Botryotinia fuckeliana]
Length = 818
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 113/185 (61%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 475 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 534
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 535 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 594
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT SQR+G++++DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 595 KLTPSQRIGIEHYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 654
Query: 387 LDVVI 391
+D++I
Sbjct: 655 IDIII 659
>gi|20067689|emb|CAD29086.1| chimeric DNA-directed DNA polymerase bf4-12 [synthetic construct]
Length = 318
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 2/191 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLND 190
Query: 387 LDVVIMHPDRK 397
+D++I+ P++K
Sbjct: 191 VDLLIIVPEKK 201
>gi|350629528|gb|EHA17901.1| hypothetical protein ASPNIDRAFT_176678 [Aspergillus niger ATCC
1015]
Length = 708
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 552 GDIDLLITKPD 562
>gi|20067679|emb|CAD29081.1| chimeric DNA-directed DNA polymerase bf4-4 [synthetic construct]
Length = 324
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 123/194 (63%), Gaps = 5/194 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 383
L H QR+GLKYF+D++ RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDVEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 384 CGDLDVVIMHPDRK 397
D+D++I+ P++K
Sbjct: 191 LNDVDLLIIVPEKK 204
>gi|403339784|gb|EJY69154.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 432
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 118/192 (61%), Gaps = 5/192 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
LN I E +L Y+ L + R + Y +A+ + + I S DQ+K +P IG+ +
Sbjct: 110 LNNEIAEQLDRLFKYYQTLKDKGRMWGYKRAVTQVRSIKEPIYSLDQLKDVPNIGEGILK 169
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS- 327
++E V G + + E + DEK++T+ LF +VWGIGP+ AQ+L++K R+++DL+N S
Sbjct: 170 KLREYVAEGSIKRFEFIDTDEKIKTLQLFEQVWGIGPSKAQELWDKKMRSIEDLRNHQSL 229
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP--EVI--ILCGGSYRRGKAS 383
LT Q++GLKYF+D +IPR EV ++ +++ +V+P E I I GSYRRG+
Sbjct: 230 LTSMQKIGLKYFEDFNEKIPREEVTKLLEKVREISYKVIPMGEKILKIEACGSYRRGRQL 289
Query: 384 CGDLDVVIMHPD 395
CGD+DV++ D
Sbjct: 290 CGDIDVLVTRTD 301
>gi|310793348|gb|EFQ28809.1| hypothetical protein GLRG_03953 [Glomerella graminicola M1.001]
Length = 819
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y + + R +Y KAI +++ P KI +A++ LPG+G+ + D
Sbjct: 484 NGRTIEILQQMCNYYERVNDTWRPIAYRKAITQLKRQPSKISTAEEAIRLPGVGQRLADK 543
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE E++ + + +F ++G+G A +G RTL+DLK + LT
Sbjct: 544 IEEIVTTNRLQRLESAEQEPMDKVLQMFLNIYGVGSVQASHFVSQGFRTLEDLKEKAKLT 603
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR EV+ + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 604 PNQRIGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPSVQLIIGGSYRRGALDSGDVDF 663
Query: 390 VI 391
+I
Sbjct: 664 II 665
>gi|20067683|emb|CAD29083.1| chimeric DNA-directed DNA polymerase bf4-8 [synthetic construct]
gi|20067685|emb|CAD29084.1| chimeric DNA-directed DNA polymerase bf4-10 [synthetic construct]
Length = 322
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 122/193 (63%), Gaps = 4/193 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 384
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 385 GDLDVVIMHPDRK 397
D+D++I+ P++K
Sbjct: 191 NDVDLLIIVPEKK 203
>gi|302926226|ref|XP_003054252.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
gi|256735193|gb|EEU48539.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
Length = 818
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 117/186 (62%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y K I +++ K+ +A++ + LP IG + +
Sbjct: 483 NARTIEVLQSMADYYDRINDHWRTTAYRKVISTLKRQDTKVTTAEEAQRLPSIGTRLAEK 542
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK + L+
Sbjct: 543 IEEIVTTDRLRRLEYTQKEPMDEALQLFLGIYGVGTSQAQQWLAQGFRTLDDLKAKAKLS 602
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++DD+ TRIPR EVE + +++K ++V P V ++ GGSYRRG + GD+D
Sbjct: 603 PNQLLGIEHYDDLNTRIPRREVEALGTVVRKGAQQVDPNVELIIGGSYRRGAETSGDIDF 662
Query: 390 VIMHPD 395
+I P+
Sbjct: 663 IITKPN 668
>gi|47226550|emb|CAG08566.1| unnamed protein product [Tetraodon nigroviridis]
Length = 311
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASAIAKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +++G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFDEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GL YF++ + RIPR E+E+ME L+ K ++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRAEMEKMESLILKELTKIDSEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHP 394
+D+++ HP
Sbjct: 191 IDILLTHP 198
>gi|20067711|emb|CAD29097.1| chimeric DNA-directed DNA polymerase bf2-7a [synthetic construct]
Length = 320
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 122/193 (63%), Gaps = 4/193 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 384
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 385 GDLDVVIMHPDRK 397
D+D++I+ P++K
Sbjct: 191 NDVDLLIIVPEKK 203
>gi|20067701|emb|CAD29092.1| chimeric DNA-directed DNA polymerase bf4-19 [synthetic construct]
Length = 329
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 122/194 (62%), Gaps = 5/194 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 383
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 384 CGDLDVVIMHPDRK 397
D+D++I+ P++K
Sbjct: 191 LNDVDLLIIVPEKK 204
>gi|340727567|ref|XP_003402113.1| PREDICTED: DNA polymerase beta-like [Bombus terrestris]
Length = 336
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 118/187 (63%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E ++TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + IPR E+EQ+E++++ + ++ E +I GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKGIPRKEIEQIEKIIKDSIVKLNKEYVITICGSYRRGKEESGDI 193
Query: 388 DVVIMHP 394
DV++ HP
Sbjct: 194 DVLLTHP 200
>gi|395507540|ref|XP_003758081.1| PREDICTED: DNA polymerase beta [Sarcophilus harrisii]
Length = 348
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 216 IFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
+F +L N R + +S Y KA VI K P +I+S + K L G+G + + I E +
Sbjct: 31 LFSELANYERNVNRAIHKYSAYRKAASVIAKYPSQIKSGAEAKKLDGVGAKIAEKIDEFL 90
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQR 333
TGKL KLE +D+K +I+ V GIGP+ A+KL ++G +TL+DL KNE L H QR
Sbjct: 91 ATGKLRKLEKIRQDDKSSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNESKLNHHQR 150
Query: 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+GL+YF+D + RIPR E+ QM+ ++ ++V + I GS+RRG S GD+D+++ H
Sbjct: 151 IGLRYFEDFEKRIPREEMLQMQDIVLNEIKKVDSKYIATVCGSFRRGAESSGDMDILLTH 210
Query: 394 P 394
P
Sbjct: 211 P 211
>gi|339242947|ref|XP_003377399.1| DNA polymerase lambda [Trichinella spiralis]
gi|316973801|gb|EFV57356.1| DNA polymerase lambda [Trichinella spiralis]
Length = 606
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 109/174 (62%)
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y+++ E R+ +Y KAI I++ I S + + LPGIGK + I E+ G++ K+
Sbjct: 132 YKSMNESWRALAYDKAISSIKQCKEPITSKEMLSELPGIGKKIAAKIWELHEEGEIEKVS 191
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
F +EK++ + LF VWG+GP TA+K Y +G RT++D++ +LT + +G KY ++I
Sbjct: 192 EFASNEKIQVLKLFNTVWGVGPRTAEKWYLQGLRTIEDVQRNVALTGQEHIGFKYREEIL 251
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+IPR EVE++ +++ A ++ + GSYRRG+ CGD+D++I HPD K
Sbjct: 252 LKIPRPEVEEIAKMVIDAAYKINNNFVCDICGSYRRGEEECGDVDILITHPDGK 305
>gi|156369028|ref|XP_001627992.1| predicted protein [Nematostella vectensis]
gi|156214957|gb|EDO35929.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 109/188 (57%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N++IT+ L Y + R+ Y KAI I+ KIE+ ++ LP +G+ +
Sbjct: 80 NEHITDQLQILATSYANTKDQWRALGYKKAISSIKSYHKKIETEEECHRLPFVGERLAKK 139
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EIV TG L +L+ D K I+LF VWG GP A+ KG RTL+DLK L
Sbjct: 140 IWEIVQTGHLRRLDFI--DPKTEAINLFSGVWGAGPKAAELWVSKGLRTLEDLKRHGGLN 197
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GL+Y+D+ R+PR E ++ +++ A E + P ++ + GSYRRGK++CGD+DV
Sbjct: 198 KQQEIGLRYYDEFNERMPREEAGKIGEVVKAATEIIDPSLLCITCGSYRRGKSTCGDVDV 257
Query: 390 VIMHPDRK 397
++ HPD K
Sbjct: 258 LVSHPDGK 265
>gi|12834033|dbj|BAB22759.1| unnamed protein product [Mus musculus]
Length = 312
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+
Sbjct: 4 YSVQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLD 63
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
H + V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD
Sbjct: 64 HIS--DSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFL 121
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 122 DRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPD 173
>gi|403342628|gb|EJY70640.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 659
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 159/358 (44%), Gaps = 66/358 (18%)
Query: 99 EKVSEDLYRIKLDPEGENIADRVLSQIQG---------------NGNTSSDGE------- 136
E++ +D+YR+K +G+N RV ++ NGN S + E
Sbjct: 170 EEIIDDIYRMKFQKDGKNSQKRVFDELSKSSSNILHKNETKSHLNGNQSQENEDENFGIN 229
Query: 137 ----SSHRKKIKSSTEDVE----------------------------HFQAESKGDV--E 162
SSHR +D E H A S+G E
Sbjct: 230 LHEESSHRSLRSKFYKDGEECFSEDSYLHSWKPEYIANRENYWDKKKHMFACSRGSTLKE 289
Query: 163 TNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLIN 222
+ + +S N S + +S + D P +N I + KL
Sbjct: 290 NQIIEDGQIKELSDVKQENL----SQDANLASQEMIDTQTTKKKP-MNDEIIKQLEKLYK 344
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 345 YYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGNGILKKVQELIEEGSIKRF 404
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDD 341
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++D
Sbjct: 405 EFLSHDESVVVTELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYED 464
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPD 395
IK RIPRHEV QM L+++ ++P + + GSYRRGK SCGD+D++I D
Sbjct: 465 IKQRIPRHEVTQMLELIRQTAFGLIPNGEKLLKVDACGSYRRGKQSCGDIDILITKVD 522
>gi|20067693|emb|CAD29088.1| chimeric DNA-directed DNA polymerase bf4-15 [synthetic construct]
Length = 319
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 4/191 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 387 LDVVIMHPDRK 397
+D++I+ P++K
Sbjct: 189 VDLLIIVPEKK 199
>gi|212542803|ref|XP_002151556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
gi|210066463|gb|EEA20556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
Length = 628
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 199/437 (45%), Gaps = 65/437 (14%)
Query: 14 DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
++N IF G+ F V RRL+I R + + GA+ + S VTHV+ +D
Sbjct: 54 ETNQIFKGLTFFFVPNNDISPARRLRIQRSQ--EYGASWAQTWSSDVTHVIVDKGLDYRE 111
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
+L+ ++ + L+ +++ ++ D L + R ++D + Q N
Sbjct: 112 MLKVLTPEQLS-ANIAIVNQDYVSDCLVFKSVLLVTQLRFRVDGTPTTSGTDAAAPAQAN 170
Query: 129 G------NTSSDGESSHRKKIKS---------------------STEDVEHFQAESKGD- 160
N+S + + S RK +S T+ QAE
Sbjct: 171 SIPTTNPNSSLNVKESRRKNRRSMTPCRSEDTPIGNPAPVTVHQDTDSASPNQAEQWTPD 230
Query: 161 ------VETNALSEAP-NSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNI 213
++ A + P + P +L T S + + S IT P+ P+ KN
Sbjct: 231 LLDELMLKVKAAGQLPLDEPDDDAALDVTFEPGSGA-ETSDEAITTPN--DKVPNWQKNF 287
Query: 214 T-------------------EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 254
EI K+ + Y + R+ +Y KAI + K KI +
Sbjct: 288 ACMQKHDGNSSNNNPNAKTIEILQKMADYYDRTADTWRTMAYRKAIAALRKQKAKICTKA 347
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ +PGIG+ + D I+EIV+T +L +LE+ + + + LF V+G G A A K K
Sbjct: 348 EALAIPGIGQRLADKIEEIVSTDRLHRLENINWTPEDKALQLFLGVYGAGFAQASKWVAK 407
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G+R+L+DLKN+ LT +Q++G++ ++D + RIPR EV + +++A + P++ ++
Sbjct: 408 GYRSLEDLKNKAELTTNQKIGVERYNDFQQRIPRAEVAKHGESVREAVHAIDPDMEVMVT 467
Query: 375 GSYRRGKASCGDLDVVI 391
GSYRRG A CGD+D++I
Sbjct: 468 GSYRRGAADCGDIDILI 484
>gi|345306445|ref|XP_001509890.2| PREDICTED: DNA polymerase beta-like [Ornithorhynchus anatinus]
Length = 386
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA VI K P KI+S + K L G+G + + I E ++TGKL K
Sbjct: 167 NVNRAI---HKYNAYRKAASVIAKYPNKIKSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 223
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KN+ L H QR+GLKYF+
Sbjct: 224 LEKIRQDDTGSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNDHKLNHHQRIGLKYFE 283
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
D + RIPR E+ QM+ ++ +++ P+ I GS+RRG S GD+D+++ HP
Sbjct: 284 DFEKRIPREEMLQMQDIVLNEVKKLDPKYIATVCGSFRRGAESSGDMDILLTHP 337
>gi|20067681|emb|CAD29082.1| chimeric DNA-directed DNA polymerase bf4-7 [synthetic construct]
Length = 325
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 4/191 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 387 LDVVIMHPDRK 397
+D++I+ P++K
Sbjct: 189 VDLLIIVPEKK 199
>gi|20067697|emb|CAD29090.1| chimeric DNA-directed DNA polymerase bf4-17 [synthetic construct]
Length = 319
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 119/191 (62%), Gaps = 3/191 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATV-GSLRREEKMLND 189
Query: 387 LDVVIMHPDRK 397
+D++I+ P++K
Sbjct: 190 VDLLIIVPEKK 200
>gi|380487011|emb|CCF38321.1| hypothetical protein CH063_09433 [Colletotrichum higginsianum]
Length = 824
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 111/182 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y + + R +Y KAI +++ P KI +A + LPG+G+ + D
Sbjct: 489 NGRTIEILQQMCNYYERINDTWRPIAYRKAITQLKRQPNKISTAKEAIRLPGVGQRLADK 548
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ E++ + +F ++G+G A +G RTL+DLK + LT
Sbjct: 549 IEEIVTTNRLQRLENAEQEPMDEILQIFLRIYGVGSIQASHFISQGFRTLEDLKEKARLT 608
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR E+E + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 609 PNQRIGIDHYDDLNTRIPRSEIELLGAVVRSEAAKLDPAVQLIIGGSYRRGADDSGDIDF 668
Query: 390 VI 391
++
Sbjct: 669 LV 670
>gi|408394188|gb|EKJ73422.1| hypothetical protein FPSE_06415 [Fusarium pseudograminearum CS3096]
Length = 814
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 117/182 (64%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 479 NARTIEVLQKMSDYYSRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 538
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 539 IEEIVTTDRLQRLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 598
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++ D+ TRIPR EVE + +++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 599 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRSAQHIDPEVELIIGGSYRRGAETSGDIDL 658
Query: 390 VI 391
+I
Sbjct: 659 II 660
>gi|46107476|ref|XP_380797.1| hypothetical protein FG00621.1 [Gibberella zeae PH-1]
Length = 810
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 115/182 (63%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 475 NARTIEVLQKMSDYYNRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 534
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 535 IEEIVTTDRLQRLEFAQKEPMDEALQLFLSIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 594
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++ D+ TRIPR EVE + ++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 595 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRTAQHIDPEVELIIGGSYRRGAETSGDIDL 654
Query: 390 VI 391
+I
Sbjct: 655 II 656
>gi|390359622|ref|XP_003729524.1| PREDICTED: DNA polymerase beta-like isoform 1 [Strongylocentrotus
purpuratus]
gi|390359624|ref|XP_787665.3| PREDICTED: DNA polymerase beta-like isoform 2 [Strongylocentrotus
purpuratus]
Length = 339
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 7/176 (3%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA V+ K P KI+S D+ K L GIG + I E++ TGKL K
Sbjct: 29 NVNRAM---HKHNAYRKAASVLAKYPTKIKSGDEAKRLDGIGVQIAKKIDEVIATGKLEK 85
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL-KNEDSLTHSQRLGLKYF 339
LE KD+K I+L V GIGP A+KL + G ++DDL KN D L H Q++GL++F
Sbjct: 86 LEKIRKDDKSEAINLLTRVSGIGPVAARKLVMDDGVMSIDDLRKNTDKLNHHQKIGLRHF 145
Query: 340 DDIKTRIPRHEVEQMERLLQ-KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+D + RIPR EV ++E +L+ + E V +C GSYRRG AS GD+DV++ HP
Sbjct: 146 EDFERRIPREEVTRLEGILKSQVAAEDEDYVATVC-GSYRRGAASSGDMDVLLTHP 200
>gi|154315176|ref|XP_001556911.1| hypothetical protein BC1G_04627 [Botryotinia fuckeliana B05.10]
Length = 353
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 112/185 (60%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 10 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 70 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT SQ++G++ +DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 130 KLTPSQQIGIERYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 189
Query: 387 LDVVI 391
+D++I
Sbjct: 190 IDIII 194
>gi|426252965|ref|XP_004020173.1| PREDICTED: DNA polymerase lambda isoform 2 [Ovis aries]
Length = 483
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EEPQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R L+D++N LT Q +GLK++DD R+PR E ++E+ +++A + + P ++
Sbjct: 260 WYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV++ HPD
Sbjct: 320 CVACGSYRRGKATCGDMDVLLTHPD 344
>gi|336463231|gb|EGO51471.1| hypothetical protein NEUTE1DRAFT_88906 [Neurospora tetrasperma FGSC
2508]
gi|350297570|gb|EGZ78547.1| hypothetical protein NEUTE2DRAFT_154936 [Neurospora tetrasperma
FGSC 2509]
Length = 806
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 109/182 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 493 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAHHLPSIGKRLAEK 552
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 553 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 612
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H+QR+G+ Y++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 613 HNQRIGVDYYEDLNTRIPRSEVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 672
Query: 390 VI 391
+I
Sbjct: 673 II 674
>gi|20067695|emb|CAD29089.1| chimeric DNA-directed DNA polymerase bf4-16 [synthetic construct]
Length = 334
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 11/198 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQ---MERLLQKAGEEVLPEVI------ILCGGSY 377
L H QR+GLKYF+D + RIPR ++ + L + E ++I I+ GS+
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSF 190
Query: 378 RRGKASCGDLDVVIMHPD 395
RRG S GD+DV++ HP+
Sbjct: 191 RRGAESSGDMDVLLTHPN 208
>gi|301756146|ref|XP_002913916.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Ailuropoda
melanoleuca]
Length = 483
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G RTL+D++ + SLT Q +GLK++DD RIPR E ++E+ +++A + P ++
Sbjct: 260 WYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVREAAQAFNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV++ HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLLTHPD 344
>gi|346320323|gb|EGX89924.1| DNA polymerase POL4 [Cordyceps militaris CM01]
Length = 796
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 109/185 (58%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ +++ Y + R +Y KAI +++ P +I + ++ LPG+G +
Sbjct: 475 NARTVEVLQSMLSYYERTSDQWRVLAYRKAIATLKRQPARISTENEALRLPGVGARLAAK 534
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI TT +L +LEH ++D + + LF V G+GPA A + +G RTL+D++ + LT
Sbjct: 535 IAEIATTDRLRRLEHAQRDGSDQVLKLFLGVHGVGPALAARWAARGMRTLEDVRRQVKLT 594
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q++G++ + D+ T+IPR EVE + +++Q V V ++ GGSYRRG S GD+D+
Sbjct: 595 AGQQMGMERYADLNTKIPRDEVEALAKVVQDEAARVDDAVQLIVGGSYRRGAPSSGDVDM 654
Query: 390 VIMHP 394
+I P
Sbjct: 655 IISKP 659
>gi|344274827|ref|XP_003409216.1| PREDICTED: DNA polymerase lambda isoform 2 [Loxodonta africana]
Length = 483
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PG+GK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGVGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G RTL+D++++ SLT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++
Sbjct: 260 WYQQGFRTLEDIRSQASLTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|358379789|gb|EHK17468.1| hypothetical protein TRIVIDRAFT_57340 [Trichoderma virens Gv29-8]
Length = 624
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 114/190 (60%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N EI K+ Y + + R+ +Y KAI ++++ KI + ++ LP IG+
Sbjct: 293 NQDNPNARTIEILQKMNGYYERINDHWRTIAYRKAISILKQQSVKITTEEEAYRLPSIGR 352
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ I+EIVTT KL +LE E+D + F +++G+G A++ +G RTL+D+K
Sbjct: 353 RLAQKIEEIVTTDKLQRLECAEEDPTDHALQTFLKIYGVGNKIAEQWIAQGWRTLEDVKQ 412
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT SQR+G++++DD+ TRIPR EV + +++KA E+ V ++ GGSYRRG S
Sbjct: 413 HAKLTPSQRVGMEHYDDLNTRIPRMEVTALGDIVKKAAAEIDAAVQLIIGGSYRRGAESS 472
Query: 385 GDLDVVIMHP 394
D+D+++ P
Sbjct: 473 HDIDLIVTKP 482
>gi|111226476|ref|XP_001134542.1| DNA polymerase beta [Dictyostelium discoideum AX4]
gi|90970597|gb|EAS66859.1| DNA polymerase beta [Dictyostelium discoideum AX4]
Length = 509
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 119/187 (63%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ +T+I +L + G + +Y KA I P +I S + + L G+GK +
Sbjct: 57 NQKLTDIITELSIFEKNKGLQHKYSAYRKAAQSIRAHPKEITSGIEAQKLDGVGKKIAKK 116
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
IQEI+ TG+L KL + KDE + +I +V GIGP AQK Y++G +++ DL K +D L
Sbjct: 117 IQEIIDTGELKKLNNQLKDETLTSIGEISKVSGIGPKAAQKFYDEGIKSIKDLWKIKDRL 176
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
TH Q++GLKYF++I+ ++PR+E+EQ E L+++A ++ ++I GSYRRG S GD+D
Sbjct: 177 THHQQIGLKYFNEIEQKVPRNEIEQFEELVRQALLKIDKKIIYETCGSYRRGLPSSGDVD 236
Query: 389 VVIMHPD 395
+++ HP+
Sbjct: 237 ILLSHPN 243
>gi|330800723|ref|XP_003288383.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
gi|325081565|gb|EGC35076.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
Length = 370
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+I +L + G+ R +Y KA+ I+ P +I+S + + L G+G +
Sbjct: 45 NKQLTDILTELSVFEKNKGQVHRFTAYRKAVLSIKAYPHEIKSGLEAQKLDGVGAKIAKK 104
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I EI+ TG L KL+ +DE + I+ V GIGP A+ L E+G +T+DDLK +++L
Sbjct: 105 IDEILKTGDLKKLKSQNQDETLTAINQLSRVTGIGPQKAKSLVEEGIKTIDDLKKIKNTL 164
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
TH Q++GLKYF + + R+PR E+E E+L+ + + P +I GSYRRG S GD+D
Sbjct: 165 THHQQIGLKYFSEFEQRVPRKEIEVFEKLVSNSLFSIDPNIISQVCGSYRRGLESSGDID 224
Query: 389 VVIMHPD 395
++I HP+
Sbjct: 225 ILISHPN 231
>gi|342879714|gb|EGU80951.1| hypothetical protein FOXB_08510 [Fusarium oxysporum Fo5176]
Length = 808
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 113/182 (62%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y K I +++ KI +A++ + LP +G +
Sbjct: 473 NSRTIEVLQSMADYYTRVNDHWRTTAYRKVISTLKRQETKITTAEEAQRLPSVGPRLAQK 532
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK L+
Sbjct: 533 IEEIVTTDRLQQLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLDDLKTNAKLS 592
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q +G++++DD+ TRIPR E+E + ++++ + V P+V ++ GGSYRRG + GD+D
Sbjct: 593 PNQLVGIEHYDDLNTRIPRREIEALGAIVRRGAQRVDPQVELIIGGSYRRGAETSGDIDF 652
Query: 390 VI 391
+I
Sbjct: 653 II 654
>gi|20067705|emb|CAD29094.1| chimeric DNA-directed DNA polymerase bf4-3a [synthetic construct]
Length = 335
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVI------ILCGGSYR 378
L H QR+GLKYF+D + RIPR + + L + E ++I I+ GS+R
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSFR 190
Query: 379 RGKASCGDLDVVIMHPD 395
RG S GD+DV++ HP+
Sbjct: 191 RGAESSGDMDVLLTHPN 207
>gi|239613353|gb|EEQ90340.1| DNA polymerase POL4 [Ajellomyces dermatitidis ER-3]
Length = 717
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 141/255 (55%), Gaps = 8/255 (3%)
Query: 141 KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHH 196
+K+ S EDV+ A + +V++N+ SEA + + ++ +P FS H
Sbjct: 321 EKVLSEEEDVD--TASTIDEVDSNSDSEAEKLNEAKKKKKKKKKRSTGNPQWQQTFSCMH 378
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
D + P N EI K+ Y + + R+ +Y KAI + K +I + +Q
Sbjct: 379 KHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIVTREQA 436
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
+PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K ++G+
Sbjct: 437 VTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKWIQQGY 496
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V ++ GGS
Sbjct: 497 QSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQVIIGGS 556
Query: 377 YRRGKASCGDLDVVI 391
YRRG AS GD+D++I
Sbjct: 557 YRRGAASSGDIDLII 571
>gi|358372916|dbj|GAA89517.1| DNA polymerase Pol4 [Aspergillus kawachii IFO 4308]
Length = 724
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 113/191 (59%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N N I ++++ Y+ + R +Y KAI + + P KI + + +PGIG+
Sbjct: 378 NSENPNSNTIAILQQMLDFYKRTNDQWRVLAYRKAISALRRQPRKISTRLEALAIPGIGE 437
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ + I+EIV+T L +LE+ + + + LF ++G+G A +G++TL DL+
Sbjct: 438 RIANKIEEIVSTNHLRQLEYATNSREDKILKLFTGIYGVGITQASIWLAEGYKTLGDLRL 497
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ LTH+QR+G+ ++ D RIPR EVE+ +++KA + P++ ++ GSYRRG C
Sbjct: 498 KIKLTHNQRVGIDHYRDFAQRIPRSEVEEHGEIVRKAVQSADPDMQVIIAGSYRRGAPDC 557
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 558 GDIDLLITKPD 568
>gi|242767987|ref|XP_002341478.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
gi|218724674|gb|EED24091.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
Length = 686
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/450 (26%), Positives = 205/450 (45%), Gaps = 69/450 (15%)
Query: 3 PKTTRKPTPAL----DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSK 56
PK ++ P+ +S IF ++ F V RRL+I R + GA + S
Sbjct: 101 PKCKKRRAPSAHVVPESEQIFKNLKFFFVPNNDISPARRLRIQRSQ--DYGAAWAQTWST 158
Query: 57 KVTHVL---AMDLEALLQQVSKQHLARFKG-SVIRYQWLEDSLRLGE--KVSEDLYRIKL 110
+THV+ +D + +L+ ++ + L F +++ ++ D L V++ +R+
Sbjct: 159 DITHVIVDKGLDYKEVLKVLTPEQL--FADIAIVNQDYVSDCLVFKSILLVTQARFRVDG 216
Query: 111 DP---------------------------------------EGENIADRVLSQIQGNGNT 131
P E I IQ +
Sbjct: 217 TPKTSGTDKPAHAMASIKPTGSLQEKQPQRHGRRSVTPSRSEDTRIDQMTPVAIQQEADA 276
Query: 132 SSDGESSHRK---------KIKSSTE-DVEHFQAESKGDVETNALSEAPNSPMSSESLTN 181
+S +S RK K+K++ + ++ E+ DV SEA +S ++ + +
Sbjct: 277 ASSSQSDQRKPDALDKLILKVKAAGDLPLDEADDEAALDVTIECGSEAESSQKATANPDS 336
Query: 182 TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIP 241
+ T +F+ D + L N P N +I K+ Y ++ R+ +Y KAI
Sbjct: 337 KVPTWQK--NFACMEKHDGNGLNNNP--NARTIDILQKMAVYYERTADNWRTTAYRKAIA 392
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+ K KI + + +PGIG+ + D I+EIV+T L +L++ + R + LF V+
Sbjct: 393 ALRKQKSKICTKAEALAIPGIGQRLADKIEEIVSTDHLRRLDNINATPEDRALQLFLGVY 452
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
G G A A K KG+R+L+DL+N+ LT +Q++G++ ++D K RIPR EV +++ A
Sbjct: 453 GAGFAQASKWVAKGYRSLEDLENKAELTANQKIGVERYNDFKQRIPRAEVALHGNIIRAA 512
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ P++ + GSYRRG A CGD+D++I
Sbjct: 513 VHALDPDMEAMVAGSYRRGAADCGDIDILI 542
>gi|20067677|emb|CAD29080.1| chimeric DNA-directed DNA polymerase bf4-2 [synthetic construct]
Length = 340
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 7/194 (3%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMER---LLQKAGE--EVLPEVIILCGGSYRRGK 381
L H QR+GLKYF+D + I ++ R + G+ ++L + I+ GGS+RRG
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGGSFRRGA 190
Query: 382 ASCGDLDVVIMHPD 395
S GD+DV++ HP+
Sbjct: 191 ESSGDMDVLLTHPN 204
>gi|403259673|ref|XP_003922329.1| PREDICTED: DNA polymerase lambda isoform 4 [Saimiri boliviensis
boliviensis]
Length = 483
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P ++
Sbjct: 260 WYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNPRLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGK +CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKVTCGDVDVLITHPD 344
>gi|164424229|ref|XP_963912.2| hypothetical protein NCU07461 [Neurospora crassa OR74A]
gi|157070429|gb|EAA34676.2| predicted protein [Neurospora crassa OR74A]
Length = 805
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 109/182 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 492 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAYHLPSIGKRLAEK 551
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 552 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 611
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H+QR+G+ +++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 612 HNQRIGVDHYEDLNTRIPRREVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 671
Query: 390 VI 391
+I
Sbjct: 672 II 673
>gi|393219346|gb|EJD04833.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 592
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 10/195 (5%)
Query: 209 LNKNITEIFGKL--INIYRALGEDR----RSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
+N++I + +L IN + G+ R R FSY K+I I P +I + + + GI
Sbjct: 253 VNQDIVDKLSELEEINRTKISGDPREQRWRVFSYGKSIRAIRAHPKRIRNYEDAIAIRGI 312
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G I EI+ TG L +++ ++ E V+ I LF ++G+G +TAQK Y G RTLDD+
Sbjct: 313 GSKTAAKIVEIIKTGDLGRIK-YDNTEDVQAIKLFNNIYGVGLSTAQKWYSMGCRTLDDV 371
Query: 323 KNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
KN +++ Q +GLKY+DDI TRIPR EVE++ ++ E+ P++ L GSYRR
Sbjct: 372 KNRKGGITVSDVQEIGLKYYDDINTRIPRGEVEEIFNRVKLIALEIDPKLFFLLMGSYRR 431
Query: 380 GKASCGDLDVVIMHP 394
G SCGD+D+++ P
Sbjct: 432 GAKSCGDIDILMTRP 446
>gi|348578601|ref|XP_003475071.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Cavia porcellus]
Length = 482
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PG+GK M + IQEI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EGPQEACSIPGVGKRMAEKIQEILESGHLRKLDHI--SESVPVLQLFSSIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R+L+D++N SLT Q +GLK++ D R+PR E ++E+ + KA P ++
Sbjct: 260 WYHQGFRSLEDIRNLASLTAQQAIGLKHYSDFLERMPRDEAAEIEQTVSKAAYTCNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGK +CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKPTCGDVDVLITHPD 344
>gi|189188924|ref|XP_001930801.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972407|gb|EDU39906.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 670
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 6/254 (2%)
Query: 148 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 202
ED + A D E + E P + L+N LS +SA D ++ DP
Sbjct: 275 EDADSLLASGIDDAEDSGTDEEPLVALKPTKLSNILSRSSALRDKKVINMNTFQCMDPGA 334
Query: 203 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
YN + N +I ++ Y + + R+ SY K I ++K KI +A+Q LP
Sbjct: 335 NGYNSQNPNARTIQILEEMCKHYDQMQDHWRTLSYRKCINTLKKQTVKITTAEQAIALPF 394
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG + D I+EIV T +L +L+ D + + LF ++G G + A K + G+RTL D
Sbjct: 395 IGTRLADKIEEIVLTVRLRRLDSTRDDPLDKILRLFLGIYGAGLSQANKWIQTGYRTLSD 454
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L+ + LT SQ++GL+++ D +RIPR EVE ++ A +++ P+ GSYRRG
Sbjct: 455 LETKAKLTPSQKVGLEHYTDFNSRIPRAEVEVHGAVVIAALKKIDPKFKATIMGSYRRGA 514
Query: 382 ASCGDLDVVIMHPD 395
GD+D++I PD
Sbjct: 515 KDSGDIDMIITCPD 528
>gi|357627529|gb|EHJ77195.1| hypothetical protein KGM_16934 [Danaus plexippus]
Length = 331
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query: 207 PDLNKNITEIFGKLI--------NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 258
P N N+ F + N+ R + + +Y KA V+ +IES Q K
Sbjct: 7 PSTNNNVNADFCDFLMELADYEKNVSRNI---HKYNAYRKAASVLAAHHKRIESGQQAKK 63
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
L G+G+ + I E + TGKL KLE+ DEK + ISL V GIGP A L +KG +T
Sbjct: 64 LNGVGEKISKKIDEFLQTGKLRKLENIHNDEKAQAISLLTRVSGIGPVKAADLIDKGIKT 123
Query: 319 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
L+DL KN+D L H Q +GLKYF++ + +IPR E++++E +++K ++ + I GSY
Sbjct: 124 LEDLNKNQDLLNHHQLIGLKYFENFEEKIPREEIQKIEAIIKKNILDLDCDYTITICGSY 183
Query: 378 RRGKASCGDLDVVIMHPDRK 397
RRG + GD+DV++ HP K
Sbjct: 184 RRGASQSGDIDVLVTHPTMK 203
>gi|20067699|emb|CAD29091.1| chimeric DNA-directed DNA polymerase bf4-18 [synthetic construct]
Length = 338
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 116/196 (59%), Gaps = 9/196 (4%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVII-----LCGGSYRR 379
L H QR+GLKYF+D + RIPR + + L + E ++I + GS+RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAGSFRR 190
Query: 380 GKASCGDLDVVIMHPD 395
G S GD+DV++ HP+
Sbjct: 191 GAESSGDMDVLLTHPN 206
>gi|429862634|gb|ELA37273.1| DNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 809
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 109/182 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++ + Y + R +Y KAI +++ P K+ +A++ LPG+G+ + D
Sbjct: 474 NNRTIEVLQQMCDYYTRTNDTWRPIAYRKAITQLKRQPNKVSTAEEAIRLPGVGQRLADK 533
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LEH E + + F +++G+G A +G RTL DLK + LT
Sbjct: 534 IEEIVTTNRLQRLEHAESEPMDEILQTFLKIYGVGSVQASHWISQGFRTLGDLKQKAKLT 593
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q +G+ ++DD+ TRIPR EV+ + +++ ++ P V I+ GGSYRRG + GD+D
Sbjct: 594 ANQHVGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPAVQIIIGGSYRRGADNSGDVDF 653
Query: 390 VI 391
+I
Sbjct: 654 LI 655
>gi|395741934|ref|XP_003777666.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 476
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 195 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 252
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 253 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 312
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 313 CVACGSYRRGKATCGDVDVLITHPD 337
>gi|291463291|ref|NP_001167556.1| DNA polymerase lambda isoform b [Homo sapiens]
gi|158257882|dbj|BAF84914.1| unnamed protein product [Homo sapiens]
Length = 483
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|367019770|ref|XP_003659170.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
gi|347006437|gb|AEO53925.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
Length = 781
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 109/182 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + EI K+ + Y + + R+ +Y KAI + + P +I + D+ LP IG+ +
Sbjct: 456 NAHTIEILQKMCDYYARVNDTWRTLAYRKAIATLRRQPTRITTEDEAFRLPNIGRRLAAK 515
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE+ + R + LF V+ +G + A K +G+RTLDDL+ + LT
Sbjct: 516 IEEIACTNRLRRLEYANDEPLDRILELFLNVYDVGLSRANKWIAQGYRTLDDLRLKADLT 575
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ +RIPR EV + +++ + P V +L GGSYRRG S GD+D+
Sbjct: 576 PNQRIGVDHYDDLNSRIPRAEVAALFAYVRREAALLDPRVELLVGGSYRRGAESSGDVDI 635
Query: 390 VI 391
++
Sbjct: 636 IV 637
>gi|118380982|ref|XP_001023653.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila]
gi|89305420|gb|EAS03408.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 121/194 (62%), Gaps = 9/194 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK ITE KL+ IY+ + RS +Y KA+ +I+ L F+I+S V+ + G+G+ +
Sbjct: 503 NFNKLITEELEKLLKIYQQEKDIGRSIAYRKAVGIIKSLDFQIKSVKDVQKINGLGEKTK 562
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I+EI+ TG+ + + + E+ + I L +VWGIGP+TA +LYE+ +T+ +L+ N+
Sbjct: 563 EKIKEILETGQCQRAQILTQSERNQAIELLSQVWGIGPSTASQLYERNIKTIAELRQNQH 622
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGK 381
L +Q++GL+YF+D+ R+PR E + + K +E+ PE II C GSYRR
Sbjct: 623 LLNKNQKIGLQYFEDLVERMPREEATLIVNEVIKGFKELYPEEHDRYDIIAC-GSYRR-- 679
Query: 382 ASCGDLDVVIMHPD 395
+CGD+D++I D
Sbjct: 680 ETCGDVDILICRKD 693
>gi|406859068|gb|EKD12139.1| fungal specific transcription factor domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 2097
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 110/182 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ EI G++ Y + + R+ +Y KA+ ++K KI +Q L IG +
Sbjct: 1772 NRQTIEILGEMGAYYERIRDQWRTLAYRKAVGTLKKQSVKITRYEQAIELQFIGHRLALK 1831
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI TG L +L++ D +T+ LF +++G+GP A K + GH+TLDDL+ +L
Sbjct: 1832 IEEIAITGHLRRLDNARLDPNDKTLQLFLKIYGVGPGQADKWIQAGHKTLDDLRALPNLH 1891
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++GL ++DD +TRIPR +V + +++KA E+ P+V + GGSYRRG + GD+D
Sbjct: 1892 KNQKVGLDHYDDFETRIPRDQVTALGEIVKKAVHEIDPQVEAIIGGSYRRGALTSGDIDF 1951
Query: 390 VI 391
+I
Sbjct: 1952 II 1953
>gi|397510314|ref|XP_003825543.1| PREDICTED: DNA polymerase lambda isoform 4 [Pan paniscus]
Length = 483
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|358400608|gb|EHK49934.1| hypothetical protein TRIATDRAFT_51201 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 112/185 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI + ++ LP IG+ +
Sbjct: 325 NARTIEMLQKMNSYYERVNDHWRTLAYRKAIGTLKQQTVKITTEEEAYRLPSIGRRLAQK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT KL +LE+ E++ + F +++G+G AQ+ +G RTLDD+K LT
Sbjct: 385 IEEIVTTDKLKRLEYAEEEPTNSALQTFLKIYGVGNKVAQQWIAQGWRTLDDIKQHVKLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQ +G++++DD+ TRIPR EV + ++++A ++ P V ++ GGSYRRG S D+D
Sbjct: 445 PSQMVGVEHYDDLNTRIPRKEVTALGEVVKRAAAKMDPMVQLIIGGSYRRGAESSHDIDF 504
Query: 390 VIMHP 394
++ P
Sbjct: 505 IVTKP 509
>gi|226290277|gb|EEH45761.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 599
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI +++ Y + + R+ +Y +AI + K KI + DQ +P IG+ +
Sbjct: 387 NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIVTKDQALAIPCIGEQLASK 446
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + + + +S F ++G+G A K +KG+++L+DLK++ SLT
Sbjct: 447 IEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKWIQKGYQSLEDLKSKASLT 506
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD RIPR EVE ++++A V P V + GGSYRRG +S GD+D+
Sbjct: 507 KNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQVFIGGSYRRGASSSGDIDL 566
Query: 390 VI 391
+I
Sbjct: 567 LI 568
>gi|194374341|dbj|BAG57066.1| unnamed protein product [Homo sapiens]
Length = 312
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 31 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 88
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 89 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 148
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 149 CVACGSYRRGKATCGDVDVLITHPD 173
>gi|225682831|gb|EEH21115.1| DNA polymerase lambda [Paracoccidioides brasiliensis Pb03]
Length = 351
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 118/200 (59%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D + P N EI +++ Y + + R+ +Y +AI + K KI
Sbjct: 123 FSCLHKHDGHTDRDNP--NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIV 180
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ DQ +P IG+ + I+EIV T +L +LE + + + +S F ++G+G A K
Sbjct: 181 TKDQALAIPCIGEQLASKIEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKW 240
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+KG+++L+DLK++ SLT +QR+G++++DD RIPR EVE ++++A V P V +
Sbjct: 241 IQKGYQSLEDLKSKASLTKNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQV 300
Query: 372 LCGGSYRRGKASCGDLDVVI 391
GGSYRRG +S GD+D++I
Sbjct: 301 FIGGSYRRGASSSGDIDLLI 320
>gi|402881275|ref|XP_003904199.1| PREDICTED: DNA polymerase lambda isoform 3 [Papio anubis]
Length = 483
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TA+
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTARM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|354496554|ref|XP_003510391.1| PREDICTED: DNA polymerase lambda isoform 2 [Cricetulus griseus]
Length = 476
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 195 EGPQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 252
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+ ++ + + P ++
Sbjct: 253 WYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEKTVRISAQAFNPGLL 312
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGK +CGD+DV+I HPD
Sbjct: 313 CVACGSYRRGKMTCGDVDVLITHPD 337
>gi|332212623|ref|XP_003255419.1| PREDICTED: DNA polymerase lambda isoform 3 [Nomascus leucogenys]
Length = 482
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 201 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 258
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 259 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 318
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 319 CVACGSYRRGKATCGDVDVLITHPD 343
>gi|396462710|ref|XP_003835966.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
gi|312212518|emb|CBX92601.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 9/256 (3%)
Query: 148 EDVEHFQAESKGDVETNALSEAPNS--PMSSESLTNTLSTASASPD-----FSSHHITDP 200
+D E+F S+ D + + + P P +E + +S ASA D S+ DP
Sbjct: 392 DDDEYFSKVSERDTDDSGTDDEPTKAEPKLAEKFS-FVSKASALRDKGSLKLSAFQCMDP 450
Query: 201 SLL-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 259
Y + N +I ++ Y + ++ R+ SY K I ++K KI +A Q L
Sbjct: 451 GASGYTSQNPNVRTIQILEEMCKHYDQMQDNWRTLSYRKCIATLKKQSIKITTAKQAIAL 510
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
P IG + D I+EIV T L KL++ D + LF V+G G A K + GHRTL
Sbjct: 511 PTIGHRLADKIEEIVLTDCLRKLDYTRNDPLDTVLRLFLGVYGAGLVQANKWIQAGHRTL 570
Query: 320 DDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DL+++ LT Q++GL+++ D RIPR EVE ++ A + P+ + GSYRR
Sbjct: 571 ADLESKAKLTPCQKIGLQHYADFNARIPRAEVEAHANHVRSALRNINPDYEAITMGSYRR 630
Query: 380 GKASCGDLDVVIMHPD 395
G A GD+D++I PD
Sbjct: 631 GAADSGDVDIIITCPD 646
>gi|426365959|ref|XP_004050033.1| PREDICTED: DNA polymerase lambda isoform 3 [Gorilla gorilla
gorilla]
Length = 483
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|119570147|gb|EAW49762.1| polymerase (DNA directed), lambda, isoform CRA_f [Homo sapiens]
Length = 188
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 379 RGKASCGDLDVVIMHPD 395
RGKA+CGD+DV+I HPD
Sbjct: 145 RGKATCGDVDVLITHPD 161
>gi|340520975|gb|EGR51210.1| DNA polymerase [Trichoderma reesei QM6a]
Length = 743
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 111/190 (58%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N E+ K+ + Y + R+ +Y KAI +++ KI + ++ LP IG+
Sbjct: 372 NQGNPNSRTIEVLQKMNSYYERTNDQWRTMAYRKAISTLKQQTVKITTEEEAYRLPSIGR 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ I+EIVTT KL +LE+ E++ + F ++G+G A++ +G RTLDD++
Sbjct: 432 RLAQKIEEIVTTDKLRRLEYAEREPSDHALQAFLGIYGVGNKVAEQWIAQGWRTLDDVRK 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT SQR+GL++++D+ TRIPR EV + ++ +A + V ++ GGSYRRG S
Sbjct: 492 HAKLTPSQRIGLEHYEDLNTRIPRSEVTALGEVVMRAAGRIDARVQVIVGGSYRRGAESS 551
Query: 385 GDLDVVIMHP 394
D+D+++ P
Sbjct: 552 HDIDLIVTRP 561
>gi|452987535|gb|EME87290.1| hypothetical protein MYCFIDRAFT_1485, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 563
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 112/186 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I ++ + Y LG++ R +Y KAI + P K+ + +Q LP +G + +
Sbjct: 238 NEATINILQQMADYYGQLGDEWRIRAYRKAIATLRNHPVKVSTKEQAGALPNVGPRLAEK 297
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + + + + F V+G G A + E+G+ TLD+L + LT
Sbjct: 298 IEEIAFTNRLRRLDNAKAEPRDQVLQTFMGVYGAGLKKATEWVEQGYTTLDELMEKAELT 357
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D KTRIPR EV + ++++A E+ P ++ GGSYRRG A+ GD+D
Sbjct: 358 ENQRIGIEHYEDFKTRIPRAEVAEHGSIVRRALHEIDPAFEVIIGGSYRRGAATSGDIDC 417
Query: 390 VIMHPD 395
+I PD
Sbjct: 418 LITRPD 423
>gi|113812195|gb|AAH03548.2| POLL protein [Homo sapiens]
gi|119570145|gb|EAW49760.1| polymerase (DNA directed), lambda, isoform CRA_d [Homo sapiens]
Length = 300
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 379 RGKASCGDLDVVIMHPD 395
RGKA+CGD+DV+I HPD
Sbjct: 145 RGKATCGDVDVLITHPD 161
>gi|327351852|gb|EGE80709.1| DNA polymerase POL4 [Ajellomyces dermatitidis ATCC 18188]
Length = 720
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 142/279 (50%), Gaps = 10/279 (3%)
Query: 113 EGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS 172
+G +I D ++ Q + + D S+ ++V+ S D E L+EA
Sbjct: 306 KGHDILDELIKQARAEKDLPLDQSEEEDVDTASTIDEVD-----SNSDSEAEKLNEAKKK 360
Query: 173 PMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRR 232
+ T FS H D + P N EI K+ Y + + R
Sbjct: 361 KKKKKRSTGNPQWQQT---FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWR 415
Query: 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
+ +Y KAI + K +I + +Q +PGIG+ + I+EIV T +L +LE +
Sbjct: 416 TLAYRKAISALRKQKERIVTREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDV 475
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
+S F ++G+G A A K ++G+++LDDLK + SLT +Q++G++++DD RIPR EVE
Sbjct: 476 LLSQFLNIYGVGFAQASKWIQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVE 535
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+++K V P V ++ GGSYRRG AS GD+D++I
Sbjct: 536 AHGAIVKKLLFTVDPAVQVIIGGSYRRGAASSGDIDLII 574
>gi|340372384|ref|XP_003384724.1| PREDICTED: DNA polymerase lambda-like [Amphimedon queenslandica]
Length = 581
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 123/198 (62%), Gaps = 4/198 (2%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYR--ALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK 257
S L+ + N+ +T +L+ Y+ +L +D+ R+ S KA+ +++ P +I + ++
Sbjct: 245 STLHAQVNHNEAVTSKLEELLLEYKNSSLPKDKWRAMSLTKAVAAVKRHPKEITTHEEAH 304
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317
+P +GK + D I EIV++G L +L+H +K K I LF + G+G A++ Y +G+R
Sbjct: 305 SIPFVGKRLADKIYEIVSSGHLRRLDHIDK-AKQSVIDLFKGIHGVGQIVAEQFYAQGYR 363
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
TLDDLK + L Q++G KY+ + R+ R EVE++ER +++ + P + ++ GS+
Sbjct: 364 TLDDLKEANILNRQQQIGFKYYHEFAERMDRSEVEEIERKVREGCHLLDPNLEVVTCGSF 423
Query: 378 RRGKASCGDLDVVIMHPD 395
RRGK +CGD+D+++ HPD
Sbjct: 424 RRGKPTCGDVDILVTHPD 441
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++N +F G+ +VE+G+ R +I ++L + G TV S+ +THV+ M L+
Sbjct: 11 EANSLFGGIVGLIVEQGLGKGRKRILEKQLEEKGGTVALSPSQTLTHVIVGPNMKYNRLV 70
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110
+ + + +++ WL SL GE V Y + L
Sbjct: 71 SLLKLKDPLPPEVTIVTADWLSASLVAGESVDHTPYLLPL 110
>gi|340923770|gb|EGS18673.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 792
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 111/182 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + RS +Y KAI + + +I +A++ LP IG +
Sbjct: 455 NARTIEVLQAMCDYYTRINDRWRSIAYRKAINTLRRQTVEICTAEEAARLPNIGSRLAAK 514
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV+T +L +L++ + + +S F +++G+G A A K +G RTL+DL+ + LT
Sbjct: 515 IEEIVSTNRLRRLDYANDEPTGQILSTFLKIYGVGNAQANKWITQGFRTLEDLRQKADLT 574
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD+ +RIPR EVE + +++ + P + +L GGSYRRG S GD+D+
Sbjct: 575 PNQRIGIEHYDDLNSRIPRAEVEALFAYVRREAGAIDPNIELLVGGSYRRGADSSGDIDI 634
Query: 390 VI 391
+I
Sbjct: 635 II 636
>gi|114632451|ref|XP_001170157.1| PREDICTED: DNA polymerase lambda isoform 17 [Pan troglodytes]
gi|410219294|gb|JAA06866.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307614|gb|JAA32407.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 483
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|70995309|ref|XP_752414.1| DNA polymerase POL4 [Aspergillus fumigatus Af293]
gi|66850049|gb|EAL90376.1| DNA polymerase POL4, putative [Aspergillus fumigatus Af293]
gi|159131169|gb|EDP56282.1| DNA polymerase POL4, putative [Aspergillus fumigatus A1163]
Length = 702
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 113/195 (57%), Gaps = 3/195 (1%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
S L NP N E+ ++++ Y + R+ +Y KAI + + P KI + Q +P
Sbjct: 371 SNLDNP---NCKTIEVLQQMLDYYTRTSDQWRTLAYRKAIAALRRQPRKIVTRAQALAIP 427
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
GIG + D I+EIV T +L +LE + + F V+G G + A + +G+RTLD
Sbjct: 428 GIGPRLADKIEEIVFTNRLRRLESTNNRPEDLILQEFLGVYGAGISQASRWIAQGYRTLD 487
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
DLK + +LT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG
Sbjct: 488 DLKTKAALTRSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRG 547
Query: 381 KASCGDLDVVIMHPD 395
+ GD+D++I D
Sbjct: 548 ASDSGDIDLLITKDD 562
>gi|409042790|gb|EKM52273.1| hypothetical protein PHACADRAFT_30808 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1125
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 210 NKNITEIFGKLINIY---RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +IF +L IY +A ++ R+ +Y K I + + P +IES +++ + G GK
Sbjct: 796 NQDIIDIFTQLKEIYEIRKAESDNFRADTYRKVIKSLREYPKRIESREELVQINGAGKKT 855
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
+D I EI+ TG+L +L+ FE ++ + LF ++G+G T+ K Y G RTLDD+ K
Sbjct: 856 KDKIMEIIKTGRLRRLQ-FEMTAELDVLRLFQGIYGVGSITSLKWYAAGCRTLDDIHQRK 914
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+ +Q LGLKY+DDI +RI R EV ++ + ++ + ++I+ GSYRRGKA
Sbjct: 915 GGIKLSDAQELGLKYYDDINSRISRQEVGEIFQRIKDIAHGIDKKLIVEIMGSYRRGKAD 974
Query: 384 CGDLDVVIMHP 394
CGD+D++I P
Sbjct: 975 CGDIDILITRP 985
>gi|451848460|gb|EMD61766.1| hypothetical protein COCSADRAFT_192625 [Cochliobolus sativus
ND90Pr]
Length = 780
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 14/234 (5%)
Query: 173 PMSSESLT--NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLI 221
PM ++ L + LS ASA D +S DPS + +NP N +I ++
Sbjct: 408 PMGTDYLKRLSVLSKASALRDKKSFGMNSFQCMDPSASSNVSWNP---NARTIQILEEMC 464
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
Y + + R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +
Sbjct: 465 KYYDRMQDQWRTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRR 524
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDD 341
LE + + + LF ++G+G A K + GHRTL+DLK + +L+ +Q++GL+ + D
Sbjct: 525 LESTCHNPQDVALRLFLGIYGVGLVCANKWIQAGHRTLEDLKTKATLSENQKIGLENYHD 584
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+RIPR EVE ++ A +E+ PE GSYRRG GD+D+++ P+
Sbjct: 585 FNSRIPRAEVEAHGVIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIILSRPN 638
>gi|451998887|gb|EMD91350.1| hypothetical protein COCHEDRAFT_1175174 [Cochliobolus
heterostrophus C5]
Length = 756
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 12/224 (5%)
Query: 181 NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLINIYRALGEDR 231
+ LS ASA D +S DPS + +NP N +I ++ Y ++ +
Sbjct: 394 SVLSKASALRDKKYFNMNSFQCMDPSSSNHISWNP---NARTIQILEEMCKYYDSMQDQW 450
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +LE + +
Sbjct: 451 RTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRRLESTRHNPQD 510
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
+ LF ++G+G A K + GHRTL DLK + +L+ +Q++GL+++ D +RIPR EV
Sbjct: 511 VALRLFLGIYGVGLVHANKWIQAGHRTLQDLKTKATLSENQKIGLEHYHDFNSRIPRAEV 570
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++ A +E+ PE GSYRRG GD+D+++ P+
Sbjct: 571 EAHGAIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIMLSRPN 614
>gi|336264419|ref|XP_003346986.1| hypothetical protein SMAC_05184 [Sordaria macrospora k-hell]
Length = 819
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 110/186 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 465 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 524
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 525 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 584
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 585 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 644
Query: 390 VIMHPD 395
++ D
Sbjct: 645 IVTKKD 650
>gi|261194855|ref|XP_002623832.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
gi|239588370|gb|EEQ71013.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
Length = 685
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D + P N EI K+ Y + + R+ +Y KAI + K +I
Sbjct: 342 FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIV 399
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K
Sbjct: 400 TREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKW 459
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V +
Sbjct: 460 IQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQV 519
Query: 372 LCGGSYRRGKASCGDLDVVI 391
+ GGSYRRG AS GD+D++I
Sbjct: 520 IIGGSYRRGAASSGDIDLII 539
>gi|403336657|gb|EJY67523.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 611
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 162 ETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 221
E + + +S E L N S + S + + P +N I + KL
Sbjct: 241 ENQIIEDGQIKELSDEKLINR----SQDGNLESQEMINTETTKKKP-MNDEIIKQLEKLY 295
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 296 KYYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGHGILKKVQELIEEGSIKR 355
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 340
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++
Sbjct: 356 FEFLSHDESVVVAELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYE 415
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPD 395
DIK RIPR EV +M L++K ++P + + GSYRRGK SCGD+D++I D
Sbjct: 416 DIKQRIPRDEVTEMLELIRKTALILIPNGQKLLKVDACGSYRRGKQSCGDIDILITKVD 474
>gi|34538970|gb|AAQ74388.1| DNA polymerase lamda2 [Homo sapiens]
Length = 483
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ LT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQAFLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRRGKA+CGD+DV+I HPD
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPD 344
>gi|348688553|gb|EGZ28367.1| hypothetical protein PHYSODRAFT_309246 [Phytophthora sojae]
Length = 475
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 119/191 (62%), Gaps = 3/191 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 254 NLNAHLTDPLEEMMEFLDVEKDIWRQYMYKKVVSSLKAMRHRVCSVKDFKDMHWVKGRLR 313
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D + EI+ TG+L+KLE +K+ ++R + +WG+GP TA KLY +G+++++DL+ ++
Sbjct: 314 DKVIEILETGRLAKLEAKKKNPRLRALVEIARIWGVGPVTAAKLYGQGYKSVEDLRKPEA 373
Query: 328 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT Q++G+K+++D+ T+IPR EV+Q+E+++ +++P I L GSYRRGK S
Sbjct: 374 AAVLTAQQQIGVKHYEDLLTKIPRAEVQQIEQIVVDEVHKLMPNAIALACGSYRRGKLSS 433
Query: 385 GDLDVVIMHPD 395
GD DV++ PD
Sbjct: 434 GDCDVLVTDPD 444
>gi|380093161|emb|CCC09399.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 843
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 110/186 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 489 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 548
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 549 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 608
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 609 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 668
Query: 390 VIMHPD 395
++ D
Sbjct: 669 IVTKKD 674
>gi|295669724|ref|XP_002795410.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285344|gb|EEH40910.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 412
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D + P N EI ++ Y + R+ +Y KAI + K KI
Sbjct: 184 FSCMHKHDGHTDRDNP--NARTIEILLQMSEYYDRNSDRWRTLAYRKAISALRKRKHKIV 241
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ DQ +P IG+ + I+EIV T +L +LE + + + +S F ++G+G A K
Sbjct: 242 TKDQALAIPCIGERLASKIEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKW 301
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+KG+++L+DLK++ SLT +QR+G++++DD RIPR EVE ++++A V P V +
Sbjct: 302 IQKGYQSLEDLKSKASLTKNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQV 361
Query: 372 LCGGSYRRGKASCGDLDVVI 391
GGSYRRG +S GD+D++I
Sbjct: 362 FVGGSYRRGASSSGDIDLII 381
>gi|320163731|gb|EFW40630.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 113/191 (59%), Gaps = 10/191 (5%)
Query: 206 PPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
P + NK +T+IF L YRA + R+ Y KAI ++ IES + LP +G+
Sbjct: 568 PINHNKQVTDIFEMLEGDYRAQKDTWRAMGYQKAITALKHHHKPIESFAEALALPNVGER 627
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+ + EIV+TG L +L+ ++D +++ I +V+G+GP TAQKLY KG ++D L+ +
Sbjct: 628 LAKKVWEIVSTGHLRRLD--DRDPRLKVILEMSQVYGVGPTTAQKLYAKGIHSMDQLRAQ 685
Query: 326 DS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
S L ++G+K++DD+ +IPR EV + + V++ GSYRRGK +C
Sbjct: 686 ASQLPPIMQIGVKHYDDLLKKIPRAEVYHFAKQINSG-------VLVAICGSYRRGKDTC 738
Query: 385 GDLDVVIMHPD 395
GD+D+++ HPD
Sbjct: 739 GDVDILLSHPD 749
>gi|336390929|dbj|BAK40156.1| DNA polymerase beta [Tribolium castaneum]
Length = 330
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 40 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 99
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 100 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 159
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+E L++ E P++ + GSYRRGK GD+D +I HP+
Sbjct: 160 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPN 198
>gi|449544000|gb|EMD34974.1| hypothetical protein CERSUDRAFT_157745 [Ceriporiopsis subvermispora
B]
Length = 697
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 210 NKNITEIFGKLINIYR---ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ E +L+ ++R ++ + R +SY KAI + + P +I S +Q +G+ G+G
Sbjct: 363 NQDVVEKLEQLMELHRTKSSMEDHWRVYSYGKAIRALRQHPRRITSYEQARGIDGVGDKT 422
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
I EI++TG+L +L+ FEK + TI+LF ++G+G TA+K Y +G RTL DL K
Sbjct: 423 AQKIMEIISTGELRRLD-FEKTDDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGK 481
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+H Q++G+ Y+ DI +R+PR E ++ ++ + P + I GSYRRG+
Sbjct: 482 GGVQLSHVQQIGVNYYADINSRMPRAEATEIFERVKTIALRLDPRLFIEILGSYRRGEPD 541
Query: 384 CGDLDVVIMHP 394
CGD+DV+I P
Sbjct: 542 CGDIDVLITRP 552
>gi|378729050|gb|EHY55509.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 763
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 112/186 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E K+ Y A G+ R+ +Y +A+ + K P + + + + GIG+ + +
Sbjct: 437 NAQTIEKLLKMGEYYGATGDQWRTRAYRQAVAALRKQPQLVRTKEDALAVKGIGERIAEK 496
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
IQEIV+TG+L +L++ + D + +T+ LF ++ +G TA K +GHRTL+DL + L
Sbjct: 497 IQEIVSTGRLQRLDNAQLDSRDKTLRLFMGIYHVGYPTASKWIAEGHRTLEDLLAKVDLN 556
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD + RIPR EV Q ++QK ++ + ++ GGSYRRG CGD+D+
Sbjct: 557 RNQRIGIEHYDDFQQRIPRAEVAQHAAIVQKELQKADRGLRMIVGGSYRRGSPDCGDIDL 616
Query: 390 VIMHPD 395
+I D
Sbjct: 617 IIFKKD 622
>gi|296414489|ref|XP_002836932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632777|emb|CAZ81123.1| unnamed protein product [Tuber melanosporum]
Length = 777
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 108/182 (59%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ EI ++ Y L + RS Y KAI ++K +I A++ + LPGIG +
Sbjct: 457 NQRTIEILSEMQRYYEMLKDTWRSLGYRKAIATLKKQDHRIRFANEARELPGIGDRIALK 516
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +L++ + D + + LF ++G+G AQK + G+RTLDD+K LT
Sbjct: 517 IEEIVRTDRLRRLDYTKMDPEDEALRLFLGIYGVGGVKAQKWVDAGYRTLDDIKAHARLT 576
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQ+ G+++++D + RIPR EV+Q + + E+ E+ + GSYRRG CGD+D+
Sbjct: 577 SSQQTGIEHYEDFQQRIPRDEVKQHGDIAMRVAHEIDAELKLEILGSYRRGAKDCGDIDI 636
Query: 390 VI 391
+I
Sbjct: 637 MI 638
>gi|322699201|gb|EFY90965.1| DNA polymerase POL4, putative [Metarhizium acridum CQMa 102]
Length = 756
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 113/186 (60%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ Y KAI +++ +I + ++ LP IG+ +
Sbjct: 421 NSRTIEVLQSMASYYDRVNDHWRTTGYRKAIATLKRQATRITTEEEAFQLPHIGRRIAQK 480
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT KL +LE+ + D + +F +++G+G AQ+ +G+RTL+D+K++ L
Sbjct: 481 IEEIVTTNKLQRLEYAQDDPTDGALQIFLQIYGVGNKQAQQWVCQGYRTLEDIKSKAKLN 540
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQR+G +++DD+ TRIPR EVE + ++++A + + ++ GGSYRRG AS D+D+
Sbjct: 541 PSQRVGAEHYDDLNTRIPRREVEALGAVVRRAAARIDAQAELIIGGSYRRGAASSNDIDL 600
Query: 390 VIMHPD 395
++ D
Sbjct: 601 IVTKLD 606
>gi|242014662|ref|XP_002428004.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212512523|gb|EEB15266.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 440
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 8/189 (4%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK + E KL N+Y + R +SY +AI I +I++ + +PGIG+ +
Sbjct: 138 NKIVIEELEKLENVYDVRNDTSRCYSYKRAISAISLYDKEIKTYQEACSIPGIGQKIASE 197
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I E++ +GK++KLE+ DEK + + +F VWG GP TA+ Y +G R L DL+ LT
Sbjct: 198 IMEVLESGKINKLENLLDDEKTKILKMFCNVWGAGPHTAEMWYSQGMRNLKDLR-RGKLT 256
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA-----GEEVLPEVIILCGGSYRRGKASC 384
Q +GLK + D+ +IPR EV ++ ++++K G+E V ++ GSYRRGK +C
Sbjct: 257 RRQEIGLKLYRDLSEKIPRQEVIKIFQIIEKCVTEMNGDESSLGVELV--GSYRRGKENC 314
Query: 385 GDLDVVIMH 393
GD+DV+I++
Sbjct: 315 GDVDVMIVN 323
>gi|322708747|gb|EFZ00324.1| DNA polymerase POL4, putative [Metarhizium anisopliae ARSEF 23]
Length = 756
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ + N P N E+ + N Y + + R+ Y KAI +++ +I
Sbjct: 405 FACNQAGAQDAFQNNP--NSRTIEVLQSMANYYDRVNDHWRTTGYRKAITTLKRQATRIT 462
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
++ LP IG+ + I+EIVTT KL +LE+ + + + +F ++G+G AQ+
Sbjct: 463 IEEEAFQLPHIGRRIAQKIEEIVTTNKLQRLEYAQDEPMDGALQVFLRIYGVGNKQAQQW 522
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+RTL+D+K++ L SQR+G++++DD+ TRIPR EVE + +++A + + +
Sbjct: 523 VSQGYRTLEDIKSKAKLNPSQRVGVEHYDDLNTRIPRREVEALGAFVRRAAARIDAQAEL 582
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD 395
+ GGSYRRG S GD+D ++ D
Sbjct: 583 IIGGSYRRGSTSSGDIDFIVTKLD 606
>gi|346471971|gb|AEO35830.1| hypothetical protein [Amblyomma maculatum]
Length = 335
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 14/187 (7%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D KNIT NIY+ S +Y KA +EKL ++ SA++ K LPGIG +
Sbjct: 25 DYEKNITR------NIYK-------SNAYRKAAVTLEKLDKRVTSAEEAKALPGIGAKIS 71
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
I E + TGK+SKLE DE + V GIGPA A+ LY++G R++D+L+ N+D
Sbjct: 72 QKIGEFLRTGKVSKLEKVRSDESASAVQELTRVSGIGPAHAKSLYDRGIRSIDELRQNQD 131
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
+LT Q++GL+Y +D + RIPR EV +E + + + + GSYRRG + GD
Sbjct: 132 ALTQHQKIGLRYLEDFEKRIPREEVSLLEARIVGELNKFDEDYQAVACGSYRRGLPTSGD 191
Query: 387 LDVVIMH 393
+DV++ H
Sbjct: 192 IDVLVCH 198
>gi|326932793|ref|XP_003212497.1| PREDICTED: DNA polymerase beta-like [Meleagris gallopavo]
Length = 298
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 89/135 (65%), Gaps = 1/135 (0%)
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
G+G + + I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+
Sbjct: 27 GVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLE 86
Query: 321 DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DL KNE LTH QR+GLKYF+D + RIPR E+ QM+ ++ K E V P I GS+RR
Sbjct: 87 DLRKNEHKLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVENVDPNYIATVCGSFRR 146
Query: 380 GKASCGDLDVVIMHP 394
G S GD+DV++ HP
Sbjct: 147 GAESSGDMDVLLTHP 161
>gi|91085421|ref|XP_967990.1| PREDICTED: similar to DNA polymerase beta [Tribolium castaneum]
gi|270009161|gb|EFA05609.1| hypothetical protein TcasGA2_TC015815 [Tribolium castaneum]
Length = 1080
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 4/162 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 790 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 849
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 850 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 909
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+E L++ E P++ + GSYRRGK GD+D +I HP+
Sbjct: 910 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPN 948
>gi|20067709|emb|CAD29096.1| chimeric DNA-directed DNA polymerase bf2-8 [synthetic construct]
Length = 335
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 12/201 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KAGEEVLPEVI------ILCGGS 376
L H QR+GLKYF+D + RIPR E+ Q ++++ + E ++I I+ GS
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGS 190
Query: 377 YRRGKASCGDLDVVIMHPDRK 397
RR + D+D++I+ P++K
Sbjct: 191 LRREEKMLNDVDLLIIVPEKK 211
>gi|154281005|ref|XP_001541315.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411494|gb|EDN06882.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 718
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 375 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIT 432
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 433 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 492
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 493 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 552
Query: 372 LCGGSYRRGKASCGDLDVVI 391
+ GGSYRRG AS GD+D++I
Sbjct: 553 IIGGSYRRGAASSGDIDLII 572
>gi|330928274|ref|XP_003302196.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
gi|311322563|gb|EFQ89686.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
Length = 771
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 6/254 (2%)
Query: 148 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 202
ED + A D E + E P + LT L ASA D ++ DP
Sbjct: 376 EDADSPLASGIDDAEDSGTDEEPPVALRPTKLTKFLFKASALRDKKDINMNAFQCIDPGA 435
Query: 203 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
YN + N +I ++ Y + + RS SY K I ++K KI +A Q LP
Sbjct: 436 NGYNSQNPNARTIQILEEMCRYYDQMQDHWRSLSYRKCINTLKKQTVKITTAKQAIALPF 495
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG + D I+EIV T +L +L+ D + + LF ++G G A K + G+ TL D
Sbjct: 496 IGSRLADKIEEIVLTDRLRRLDSTRDDPLDKILRLFLGIYGAGLFQANKWIQAGYHTLSD 555
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L+ + LT SQ++GL+++DD +RIPR EVE ++ A +++ GSYRRG
Sbjct: 556 LETKAKLTPSQKIGLEHYDDFNSRIPRAEVEAHGAVVIAALKKIDTNFKATIMGSYRRGA 615
Query: 382 ASCGDLDVVIMHPD 395
GD+D++I PD
Sbjct: 616 KDSGDIDMIITCPD 629
>gi|115491397|ref|XP_001210326.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197186|gb|EAU38886.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 622
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 109/191 (57%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N E+ ++++ Y + R +Y K I + K +I + Q +PGIG
Sbjct: 292 NSDNPNGRTIEVLQQMLDYYTRTDDHWRLLAYRKTISALRKQSNRITTRTQALAIPGIGT 351
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + R + F V+G G + A + +G+R+L+DLK
Sbjct: 352 RLADKIEEIVYTDRLRRLENTSTTPEDRILQKFMGVYGAGLSQASRWLAQGYRSLEDLKA 411
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ LT +QR+G+ ++DD RIPR EVE ++++A +V P + ++ GSYRRG A
Sbjct: 412 KAHLTQAQRIGVDHYDDFLQRIPRKEVEMHGEIVRRAVVKVNPGMQVIISGSYRRGAADS 471
Query: 385 GDLDVVIMHPD 395
GD+DV+I PD
Sbjct: 472 GDIDVLITQPD 482
>gi|225559652|gb|EEH07934.1| DNA polymerase lambda [Ajellomyces capsulatus G186AR]
Length = 628
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 285 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 342
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 343 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 402
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 403 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 462
Query: 372 LCGGSYRRGKASCGDLDVVI 391
+ GGSYRRG AS GD+D++I
Sbjct: 463 IIGGSYRRGAASSGDIDLII 482
>gi|281200766|gb|EFA74984.1| hypothetical protein PPL_12018 [Polysphondylium pallidum PN500]
Length = 880
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I +I ++ + G + +Y KAI I P K+ S + + L G+G +
Sbjct: 195 NQLICDILNEVSIFEKNKGATHKYNAYRKAIQSIRVHPKKLSSGSESQKLDGVGAKIAKK 254
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
+QEI+ TGKL+KL + DEK+ I+ V GIGPA A+KL E+G +++ L+ +L
Sbjct: 255 VQEILDTGKLAKLIKLQSDEKLVAINNISRVSGIGPAIAKKLVEEGVTSIEKLRKISTTL 314
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
H Q++GLKYF+DI+ R+PR E+E++E + + +++ + + GSYRRG AS GD+D
Sbjct: 315 NHHQQVGLKYFEDIEQRVPRDEIEKIETICIELLKKIDKDAVAETCGSYRRGAASSGDID 374
Query: 389 VVIMHP 394
+++ HP
Sbjct: 375 LLLTHP 380
>gi|121701899|ref|XP_001269214.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
gi|119397357|gb|EAW07788.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
Length = 677
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 107/186 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + ++++ Y + R +Y KAI + + P KI + Q + +PGIG + D
Sbjct: 352 NTRTIGVLQQMLDYYTRTSDHWRVLAYRKAIAALRRQPKKIATRAQARAVPGIGPRLADK 411
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
++EIV T +L +LE+ + + F V+G G + A + +G+R+L+DLK + +LT
Sbjct: 412 VEEIVFTNRLRRLENANDTAEDLALQEFLGVYGAGISQASRWVAQGYRSLEDLKTKATLT 471
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQR+G+ ++ D RIPR EVE ++QKA + P + ++ GSYRRG + GD+D+
Sbjct: 472 KSQRVGVDHYYDFSQRIPRKEVEAHGSIVQKAVHKTNPGMQVIISGSYRRGASDSGDIDL 531
Query: 390 VIMHPD 395
+I PD
Sbjct: 532 LITKPD 537
>gi|389631907|ref|XP_003713606.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|351645939|gb|EHA53799.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|440467878|gb|ELQ37072.1| DNA polymerase lambda [Magnaporthe oryzae Y34]
gi|440478624|gb|ELQ59443.1| DNA polymerase lambda [Magnaporthe oryzae P131]
Length = 868
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 109/183 (59%), Gaps = 1/183 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ + Y + + R+ +Y + I + + KI + ++ LP +G +
Sbjct: 521 NARTIEILQQMCDYYSQINDHWRTTAYRRVINTLRRQKHKITTEEEAVRLPSVGSRLAKK 580
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I+EI T +L +LEH + R + L+ ++G+G A++ +G RTLDDLK E +L
Sbjct: 581 IEEIAATDRLQRLEHALNEPLDRVLQLYLGIYGVGLTQARRWISRGFRTLDDLKRPEANL 640
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+QR+GL++++D+ TRIPR EVE + L+Q+ ++ +V +L GGSYRRG +S GD+D
Sbjct: 641 NKNQRMGLEHYEDLNTRIPRSEVEALGSLVQREAAKIDDQVELLVGGSYRRGASSSGDVD 700
Query: 389 VVI 391
++
Sbjct: 701 FIV 703
>gi|255950146|ref|XP_002565840.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592857|emb|CAP99225.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 711
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 192 FSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI 250
F+ DP + L NP N E+ +++ Y + R +Y KAI + K P KI
Sbjct: 371 FACMQKFDPDTKLDNP---NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINALRKQPNKI 427
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 428 ATRAQARAIPGIGERLADKIEEIVLTNRLRRLENANHTPEDLIIKEFLGVYGAGLPQASK 487
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+G+R+L DL LT QR+G++ D RIPR EVE +++KA + V ++
Sbjct: 488 WVAQGYRSLKDLLERAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKAVQAVDRDMQ 547
Query: 371 ILCGGSYRRGKASCGDLDVVIMHP 394
++ GGSYRRG +CGD+D +I P
Sbjct: 548 VIIGGSYRRGALTCGDVDCLITKP 571
>gi|118197144|dbj|BAF37047.1| DNA polymerase lambda [Coprinopsis cinerea]
Length = 800
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 210 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ + +L+ ++ A +DR R F+Y KAI + P +I S ++ + GIG
Sbjct: 464 NQDVIDKLTELMKLHEAKPSEDDRWRVFAYSKAIRALRSYPRRIRSLEEASKIRGIGSKT 523
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 524 AQKIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIRQGK 582
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+ Q +GLKY+DDI +R+PR E + + +++ + P++ + GSYRRGKA+
Sbjct: 583 GGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPIALSLDPKLFVEIMGSYRRGKAT 642
Query: 384 CGDLDVVIMHP 394
CGD+D++I P
Sbjct: 643 CGDIDILITRP 653
>gi|392563198|gb|EIW56377.1| hypothetical protein TRAVEDRAFT_59518 [Trametes versicolor
FP-101664 SS1]
Length = 743
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY KAI + K P +I+S ++ + GIG I EIV TG L +++H E+ E V
Sbjct: 434 RVMSYNKAISALRKYPARIKSYEEAVAIRGIGDKTARKIMEIVETGNLRRIQH-ERTEDV 492
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPR 348
++ F V+G+G +TA+K Y G RTL+D+ K L+ Q +GL+Y+ DI TRIPR
Sbjct: 493 ASVQTFLGVYGVGASTARKWYNSGCRTLEDVAARKGGIKLSTEQEIGLRYYQDINTRIPR 552
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
EV ++ ++ A ++ P V I GSYRRGK CGD+DV+I
Sbjct: 553 AEVAEIYAKVKAAALKIDPNVFIEVMGSYRRGKPDCGDIDVLI 595
>gi|336472599|gb|EGO60759.1| hypothetical protein NEUTE1DRAFT_76176 [Neurospora tetrasperma FGSC
2508]
gi|350294166|gb|EGZ75251.1| Nucleotidyltransferase [Neurospora tetrasperma FGSC 2509]
Length = 602
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 30/347 (8%)
Query: 65 DLEALLQQVSKQHL--ARFKGSVIRYQWLEDSLRLGEKVS-ED--LYR--------IKLD 111
D LL Q ++ L A V++ W +SL+ G + ED LYR KL
Sbjct: 100 DFHPLLTQSTQSTLKAAPTTVKVVKLAWFTESLKAGTVLPIEDYTLYRGRKQQSKPAKLQ 159
Query: 112 PEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPN 171
A ++ + + SS G +S +HF ++ +
Sbjct: 160 QASPAKAANIIKRALADPKPSSHGSRPGSSHSTTSHGRRDHFITKAPALLHMTTSEHEVE 219
Query: 172 SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 231
P L T + +P +PP N+ E K+ LG+
Sbjct: 220 LPPIPAYLHTTYACQRPAPT-------------HPP--NEPFIEELTKIRTARTLLGDKI 264
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y AI + P+ ++SA +V LPG G + QE G+L + + E D ++
Sbjct: 265 GVRAYSSAIAALISYPYLLQSAFEVARLPGCGLKIAQLYQEFREQGELQEAKEDESDPRL 324
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+ LF E+WG+ TA++ Y KG R LDD+ D+LT Q++G+KY+D+ + +IPR
Sbjct: 325 AVLKLFHEIWGVAETTAREFYNKGWRDLDDIIEYGWDTLTRVQQIGVKYYDEFQQKIPRA 384
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396
EVE + ++ + ++ P ++ G YRRGK + GD+DVV+ HPD+
Sbjct: 385 EVESIANIILEHANKIHPGFQMVIVGGYRRGKLASGDVDVVLSHPDK 431
>gi|425779219|gb|EKV17296.1| DNA polymerase POL4, putative [Penicillium digitatum PHI26]
gi|425779475|gb|EKV17527.1| DNA polymerase POL4, putative [Penicillium digitatum Pd1]
Length = 547
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 2/203 (0%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ DP + P N E+ +++ Y + R +Y KAI V+ K P KI
Sbjct: 207 FACMQKFDPDTKFGNP--NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINVLRKQPNKIA 264
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 265 TRAQARAIPGIGERLADKIEEIVLTNRLRRLENATHTPEDLIIKEFLGVYGAGLPQASKW 324
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+R+L DL LT QR+G++ D RIPR EVE +++K + V ++ +
Sbjct: 325 VAQGYRSLKDLLEMAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKVVQTVDRDMQV 384
Query: 372 LCGGSYRRGKASCGDLDVVIMHP 394
+ GGSYRRG +CGD+D +I P
Sbjct: 385 IIGGSYRRGALTCGDVDCLITKP 407
>gi|391865336|gb|EIT74620.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 704
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 110/191 (57%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y KAI + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKAISALRRQPKKILTKSQALAIPGVGP 433
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 554 GDIDLLITKPD 564
>gi|240279395|gb|EER42900.1| polymerase [Ajellomyces capsulatus H143]
gi|325089661|gb|EGC42971.1| polymerase [Ajellomyces capsulatus H88]
Length = 717
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 374 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 431
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 432 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 491
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DL LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 492 IQQGYQSLEDLNARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 551
Query: 372 LCGGSYRRGKASCGDLDVVI 391
+ GGSYRRG AS GD+D++I
Sbjct: 552 IIGGSYRRGAASSGDIDLII 571
>gi|325185752|emb|CCA20232.1| DNA polymerase lambdalike protein putative [Albugo laibachii Nc14]
Length = 621
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 109/190 (57%), Gaps = 2/190 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T +LI + R SY K + ++ + ++ + ++GL M
Sbjct: 275 NLNSHLTGPLEELIEFLHIEKDQWRVNSYKKVVGSLKVMQVRLSTVKDIQGLWWAKGRMY 334
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ E++ TG++ KLE ++ +++T+ F +WG+GP TA KLY+ G RTL DL+ S
Sbjct: 335 SRVAELLETGRMEKLEAKRRNPRLQTMLSFARIWGVGPTTAIKLYDLGFRTLADLEEAGS 394
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L+ QR+GL+++DD +IPR EV+Q+E ++ ++LP + GSYRRGK G
Sbjct: 395 SVLSQQQRIGLRHYDDFLKKIPREEVKQIESIVVDEVHQILPRANAMACGSYRRGKEISG 454
Query: 386 DLDVVIMHPD 395
D D++I PD
Sbjct: 455 DCDILITDPD 464
>gi|241852129|ref|XP_002415815.1| DNA polymerase beta, putative [Ixodes scapularis]
gi|215510029|gb|EEC19482.1| DNA polymerase beta, putative [Ixodes scapularis]
Length = 338
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 111/187 (59%), Gaps = 4/187 (2%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N++I E +L + + + +S +Y KA +EKLP +++SA+ K LPGIG +
Sbjct: 13 NQDICEFLQELAEYEKNVTRNVHKSMAYRKAAATLEKLPERVKSAEAAKELPGIGVKISQ 72
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E + TGK++K+E D+ I V GIGPA A+ L+E+G +DDL K+ S
Sbjct: 73 KIGEFLATGKVAKVEKIRADDSTSAIQDLTRVSGIGPAAARSLFERGISNVDDLRKDPSS 132
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQME-RLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT Q++GL++ +D + RIPR EV Q+E R+L + ++C GSYRRG S GD
Sbjct: 133 LTQHQKIGLRHLEDFEKRIPREEVAQLEARILAECRALDEDYEAVVC-GSYRRGLPSSGD 191
Query: 387 LDVVIMH 393
+D+++ H
Sbjct: 192 VDLLVCH 198
>gi|119570152|gb|EAW49767.1| polymerase (DNA directed), lambda, isoform CRA_j [Homo sapiens]
Length = 172
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 33 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 90
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 91 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 150
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
+ GSYRRGKA+CGD+DV+I
Sbjct: 151 CVACGSYRRGKATCGDVDVLI 171
>gi|426359503|ref|XP_004047012.1| PREDICTED: DNA polymerase beta [Gorilla gorilla gorilla]
Length = 353
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 103/196 (52%), Gaps = 36/196 (18%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLD---------------------------------- 320
+ V GIGP+ A+K ++G +TL+
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSCPVKGHLNGTESLLDLIWDVMTILKLKN 140
Query: 321 -DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL KNED L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+R
Sbjct: 141 ADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFR 200
Query: 379 RGKASCGDLDVVIMHP 394
RG S GD+DV++ HP
Sbjct: 201 RGAESSGDMDVLLTHP 216
>gi|340371419|ref|XP_003384243.1| PREDICTED: DNA polymerase beta-like [Amphimedon queenslandica]
Length = 338
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 109/187 (58%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N +I EI +L R + + + YK A V+ K P +I+S + + L G+G +
Sbjct: 13 NSDIAEILMELATYERNVARNIHKHNVYKKAANVLAKHPERIKSGAEARKLDGVGDKIAK 72
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DS 327
I EI++TG+L KLE D+ + I+ +V GIGPA A+KL ++G TL+DLKN D
Sbjct: 73 KIDEILSTGQLQKLEKIRADDSSQAINFLTQVTGIGPAAAKKLVDEGITTLEDLKNNMDK 132
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++G+K+F + RIPR E+ Q++ + + EV I GS+RRG S GD+
Sbjct: 133 LNHHQQIGVKHFHEFNERIPRPEMLQLQEIAFRLIAEVDKAFIPTVCGSFRRGALSSGDI 192
Query: 388 DVVIMHP 394
D+++ HP
Sbjct: 193 DILLCHP 199
>gi|389738936|gb|EIM80131.1| hypothetical protein STEHIDRAFT_68704 [Stereum hirsutum FP-91666
SS1]
Length = 776
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 111/196 (56%), Gaps = 12/196 (6%)
Query: 210 NKNITEIFGKLINIYRA---LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG--- 263
N++I + KL ++RA G+ R+F+Y K +P + P +IES + +PGIG
Sbjct: 431 NEDIVILLEKLAEMHRAKPMPGDFWRTFTYQKILPKLRAYPTRIESYAEAVSIPGIGDAT 490
Query: 264 --KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
K+ IQEI+ TG L +L +E V I+LF ++G+G TA K Y G TL+D
Sbjct: 491 AKKAGGSSIQEILETGDLRRL-LYENTRDVEVINLFYGIYGVGRQTAYKWYRYGCETLED 549
Query: 322 L---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L KN L Q LGLKY+ DI TRIPR E ++ +++ + P++ I GSYR
Sbjct: 550 LFSGKNGVQLNEVQELGLKYYQDINTRIPREEAAEIFEDIKRIALRIDPKLFIDIMGSYR 609
Query: 379 RGKASCGDLDVVIMHP 394
RGK + GD+D++I P
Sbjct: 610 RGKNTVGDIDILITRP 625
>gi|402077951|gb|EJT73300.1| hypothetical protein GGTG_10145 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 868
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 1/183 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-FKIESADQVKGLPGIGKSMQD 268
N E+ + + Y + R+ +Y +AI + + ++ + + LPG+G +
Sbjct: 527 NARTIEMLQSMCDFYERTNDHWRTTAYRRAIGTLRRTTDRRVATEEDAARLPGVGPRLAS 586
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+EI TT +L +LEH + + F V+G G A A++ +G RTLDDL SL
Sbjct: 587 KIEEIATTDRLRRLEHARAEPLDAVLQTFLGVYGAGLAQARRWIAQGFRTLDDLAARASL 646
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +QR+G++ D+ +RIPR EVE +++++++A V P V ++ GGSYRRG +CGD+D
Sbjct: 647 TPAQRMGVERHADLNSRIPRDEVEALDKVVRRAAAAVDPAVRLILGGSYRRGADTCGDVD 706
Query: 389 VVI 391
++
Sbjct: 707 FIV 709
>gi|225713628|gb|ACO12660.1| DNA polymerase beta [Lepeophtheirus salmonis]
Length = 340
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 113/189 (59%), Gaps = 3/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
+LN + E+ +L + + G +S +Y KA V+ K +I S D+ + L GIG +
Sbjct: 15 NLNADFCELLNELATFEQNVNGNKFKSNAYRKAANVLSKHSTRITSGDEARKLDGIGAKI 74
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-KGHRTLDDLKN- 324
I E + TG L KL++ D+K I+L V GIGP A++L E +G RT++DL+
Sbjct: 75 ALKIDEFIETGNLRKLDNIRTDDKANAINLLTRVIGIGPVKARELVENEGIRTVEDLRKI 134
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
E LTH+Q++GL++FDD + RIPR+EV+ + LL++ E+ + GSYRRG +
Sbjct: 135 EGKLTHAQKVGLRHFDDFEERIPRNEVDSLHLLLREHIGELDKTYTMTICGSYRRGLPTS 194
Query: 385 GDLDVVIMH 393
GD+DV++ H
Sbjct: 195 GDVDVLLTH 203
>gi|281212126|gb|EFA86286.1| hypothetical protein PPL_00073 [Polysphondylium pallidum PN500]
Length = 617
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 111/191 (58%), Gaps = 5/191 (2%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+++T + KL A G++ R ++Y +AI ++ L FK+ S QV + GIG +
Sbjct: 292 NYNEHLTSVLVKLQTKAEADGDNWRQYAYKRAIGILRNLTFKVTSDKQVGHIKGIGSKIS 351
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK---N 324
D I+EI+ TG L K+E + D ++ G GP T ++ KG ++ L+ N
Sbjct: 352 DKIKEILLTGTLKKVEMVQSDAHTIASEQLSKIHGTGPETVKRWLAKGINSIQKLQVIAN 411
Query: 325 EDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D LT+ Q++GLKY++D + RIPR EV+ + ++Q E+ ++I+ GS+RR K+
Sbjct: 412 NDPSFLTNQQQIGLKYYNDFQHRIPREEVQDIANIVQLVANEIDQKIIMQVCGSFRRNKS 471
Query: 383 SCGDLDVVIMH 393
+CGD+D++ H
Sbjct: 472 TCGDIDILFTH 482
>gi|116180792|ref|XP_001220245.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
gi|88185321|gb|EAQ92789.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
Length = 873
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 3/185 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI + + Y + R +Y KAI +++ P KI +A + LP IG +
Sbjct: 511 NAKTIEILQSMCDYYTRTNDTWRIMAYRKAIATLQRQPTKITTAAEAALLPNIGPRLAAK 570
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
IQEI TT +L +L++ + ++LF V+G G A A + +GHR+L DL +S
Sbjct: 571 IQEIATTNRLRRLDYTHDSPLDQALALFLGVYGAGSARAHRWIAQGHRSLADLLAPNSSA 630
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT QRLG++ + D+ RIPR EV ++ +Q+ + P V +L GGSYRRG S GD
Sbjct: 631 DLTPHQRLGVERYADLNARIPRAEVGKLFAYVQREAAAIDPGVEVLVGGSYRRGADSSGD 690
Query: 387 LDVVI 391
+DV++
Sbjct: 691 VDVIV 695
>gi|238498490|ref|XP_002380480.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
gi|220693754|gb|EED50099.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
Length = 618
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 109/191 (57%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 288 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 347
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 348 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 407
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 408 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 467
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 468 GDIDLLITKPD 478
>gi|83774049|dbj|BAE64174.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 704
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 109/191 (57%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 433
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 554 GDIDLLITKPD 564
>gi|317155700|ref|XP_001825307.2| DNA polymerase POL4 [Aspergillus oryzae RIB40]
Length = 693
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 109/191 (57%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 363 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 422
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 423 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 482
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 483 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 542
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 543 GDIDLLITKPD 553
>gi|449305237|gb|EMD01244.1| hypothetical protein BAUCODRAFT_29694 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 109/186 (58%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ + Y +G++ R +Y KAI + K P KI + Q LP IG+ +
Sbjct: 391 NAATINILQQMADYYGQMGDEWRIRAYRKAITTLRKHPTKIWTRKQALALPQIGERLATK 450
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + F ++G G A A + +G++TLD++ + L+
Sbjct: 451 IEEIAFTNRLRRLDNARDEPTDHVLQAFMGIYGAGFAKASEWVSQGYKTLDEVLAKARLS 510
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++ D RIPR EVEQ +++KA +++ P ++ GGSYRRG A+ GD+D
Sbjct: 511 SNQRIGIEHYADFNARIPRAEVEQHGGVVRKALQKLDPLFEVIIGGSYRRGAATSGDIDC 570
Query: 390 VIMHPD 395
+I HP+
Sbjct: 571 IITHPN 576
>gi|367044100|ref|XP_003652430.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
gi|346999692|gb|AEO66094.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
Length = 812
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 105/182 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + ++ R+ +Y KAI + + KI + ++ LP IG+ +
Sbjct: 468 NARTIEVLQSMCDYYTRINDNWRTLAYRKAIATLRRQSTKIMTEEEAYRLPNIGRRLAAK 527
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T KL +LE+ + + + F +++ +G + A K +G RTLDDL LT
Sbjct: 528 IEEIACTNKLRRLEYANDEPLDQVLETFLKIYDVGTSRANKWIAQGFRTLDDLLQRADLT 587
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++ ++D+ TRIPR EV + +++ ++ P V +L GGSYRRG S GD+D+
Sbjct: 588 PNQRIGIERYEDLNTRIPRDEVTALFEYVKREAAQLDPHVELLVGGSYRRGSDSSGDIDI 647
Query: 390 VI 391
++
Sbjct: 648 IV 649
>gi|302897331|ref|XP_003047544.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
gi|256728475|gb|EEU41831.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
Length = 587
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 119/213 (55%), Gaps = 7/213 (3%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
PDF + + P+ + P N+ E ++ I + G++ +Y +I + P
Sbjct: 216 PDFLETPYSCQRPTPMKPP---NEAFVEALIEVRTIRKLQGDEVGVRAYSTSIATVSAYP 272
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
K+++ +V+ LPG G + + +E TG+L+++ + D V + LF +WG+G T
Sbjct: 273 HKLQNTHEVERLPGCGAKIAELWREWNETGELTEVRKADADPMVSVLRLFYNIWGVGDTT 332
Query: 308 AQKLYEKGHRTLDDLKN--EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
A++ Y KG R L+DL + DSL+ SQ++G+K++D+ +IPR EVE + ++ K E+
Sbjct: 333 AREFYRKGWRDLNDLVDFTWDSLSRSQQVGVKFYDEFLLKIPRDEVESIGAVILKHAREI 392
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKR 398
++ G YRRGK+ CGD+DV++ H D +
Sbjct: 393 DAGFEMIIAGGYRRGKSQCGDIDVILSHRDENK 425
>gi|400603358|gb|EJP70956.1| DNA polymerase POL4, putative [Beauveria bassiana ARSEF 2860]
Length = 825
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 10/212 (4%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ H SL + N ++ +++ Y + R +Y +AI + + P KI
Sbjct: 457 FACAHAG--SLDAHASSANARTVQVLQAMLSYYERTSDTWRVMAYRRAIATLRRQPTKIS 514
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE-----KVRTISLFGEVWGIGPA 306
SA + LPG+G+ + I+EI TT +L +LEH E+D+ + LF V G+GPA
Sbjct: 515 SAREALRLPGVGQRLAAKIEEIATTDRLQRLEHAERDDDDGGGANAALRLFLGVHGVGPA 574
Query: 307 TAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
A + G RTL+D+ +DS LT QRLG++ ++D+ T+IPR EVE + +++
Sbjct: 575 LAAQWAAWGMRTLEDVVRKDSGIRLTPGQRLGIERYEDLHTKIPRDEVEALAAVVRAEAA 634
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ V I GGSYRRG GD+D+++ PD
Sbjct: 635 RIDAAVEITIGGSYRRGAPVSGDVDMMLSRPD 666
>gi|169607575|ref|XP_001797207.1| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
gi|160701441|gb|EAT85497.2| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
Length = 766
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 112/205 (54%), Gaps = 1/205 (0%)
Query: 191 DFSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 249
+ ++ DP S Y+ + N +I ++ Y + + R+ +Y K I ++K K
Sbjct: 419 NLNTFQCMDPGSNGYSSDNPNARTIQILDEMCKHYDKMQDQWRTIAYRKGITTLKKQTTK 478
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
I ++ Q LP IG+ + D I+EIV T +L KL+ + D + LF V+G G A
Sbjct: 479 IVTSKQAAALPFIGQRLADKIEEIVLTDRLRKLDSTKDDPLDSVLRLFLGVYGAGLVQAN 538
Query: 310 KLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
K + G+RTL+DL+ + LT S R+GL++++D TRIPR EVE ++ A ++ PE
Sbjct: 539 KWIQAGYRTLEDLETKAKLTDSHRVGLEHYNDFNTRIPRSEVEAHGAAVKAALAQIDPEF 598
Query: 370 IILCGGSYRRGKASCGDLDVVIMHP 394
GSYRRG GD+D++I P
Sbjct: 599 SATIMGSYRRGANDSGDIDMLITCP 623
>gi|409075809|gb|EKM76185.1| hypothetical protein AGABI1DRAFT_122771 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 780
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 131/248 (52%), Gaps = 22/248 (8%)
Query: 153 FQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKN 212
F GD+E A +P + + T T A P +N++
Sbjct: 403 FDESDSGDIEPTADEPSPRVSQNKQKRGWTCDTPQAP---------------KSPCVNQD 447
Query: 213 ITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 448 ILEKLQELQELHKAKVGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVGDKTALK 507
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I+EI+ TG L ++ +FEK + V+ LF ++G+G +TA K Y G RTL+DL+++
Sbjct: 508 IKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGQSTAFKWYSAGCRTLEDLRSQKGGV 566
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+RRGKA CGD
Sbjct: 567 RLSSVQMIGLQYYDDINDRMPRSEAKAIFELVKPIALSFDSKLFVEIMGSFRRGKADCGD 626
Query: 387 LDVVIMHP 394
+D++I P
Sbjct: 627 IDILITRP 634
>gi|301117710|ref|XP_002906583.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
gi|262107932|gb|EEY65984.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
Length = 472
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 115/191 (60%), Gaps = 3/191 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 251 NLNAHLTDPLEEMMEFLDVERDVWRQYMYKKVVSSLKAMRRRVCSVKDFKDMHWVKGRLR 310
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D + EI+ TG+L+KL+ + + ++R + +WG+GPATA KLY +G++++ +L+ ++
Sbjct: 311 DKVIEILETGRLAKLDAKKSNPRLRALVEIARIWGVGPATAAKLYGQGYKSVTELRKPEA 370
Query: 328 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT Q++G+K+++D T+IPR EV Q+E+ + +++P I L GSYRRGK S
Sbjct: 371 AAVLTAQQQIGVKHYEDFLTKIPRAEVHQIEQTVVDEVHKMIPNAIALACGSYRRGKLSS 430
Query: 385 GDLDVVIMHPD 395
GD DV+I PD
Sbjct: 431 GDCDVLITDPD 441
>gi|403417391|emb|CCM04091.1| predicted protein [Fibroporia radiculosa]
Length = 771
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 8/193 (4%)
Query: 209 LNKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
+N+++ + +L+ I++A + R FSY KAI + P +I S ++ + + G+G
Sbjct: 525 INQDVIDKLEELMEIHKAKPSEEDHWRVFSYGKAIRALRSHPTRIRSFEEARTVRGVGDK 584
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
I EI+ TG L ++ +E+ + V IS+ ++G+G A K Y G RTLDD++
Sbjct: 585 TARKIMEILETGDLRRIA-YERTDDVGAISILQGIYGVGRNIAHKWYANGCRTLDDVQAR 643
Query: 326 D---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEEVLPEVIILCGGSYRRGK 381
+LT +Q GLKY+DDI +R+PR+E ++ +++ A ++ P++ I GSYRRGK
Sbjct: 644 IGGITLTSAQETGLKYYDDINSRMPRNEAAEIFTMIKAVAALDIDPKLFIEIMGSYRRGK 703
Query: 382 ASCGDLDVVIMHP 394
A CGD+D++I P
Sbjct: 704 ADCGDIDILITRP 716
>gi|308808205|ref|XP_003081413.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
gi|116059875|emb|CAL55582.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
Length = 589
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 183/393 (46%), Gaps = 37/393 (9%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD----LE 67
AL S + G+R F V +R + L++MG +V E+ VTHV+A + L
Sbjct: 77 ALTSASLMEGVRAFFV--NFTKKRAEALGNALIRMGGSVCERADDSVTHVVACEESSALT 134
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQG 127
L+ + ++ + + I +W+ +S + + + IADR SQ
Sbjct: 135 KALESIDREDVVK-----ITPEWITESYKQRRPLPVSATNFEPRTRVAVIADRPHSQ--- 186
Query: 128 NGNTSSDGESSHRKKIKSSTEDVEHFQAESK-GDVETNALSEAPNSPMSSESLTNTLSTA 186
TSS + +++ E+ + S G + T+ L++ +E L + S
Sbjct: 187 EAATSSGDSKALAVRVRKERENALAIRRSSGFGTIWTSDLAD-------NEKLEKSRSKF 239
Query: 187 SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEK 245
S P + P + N + ++ + +IY AL + R+ Y A +
Sbjct: 240 SCQPGEHNEKAM-------PIECNTKVADLLKGMADIYEDALRDQYRAKQYAAAASALRS 292
Query: 246 LPFKIESADQVKGLPGIGKS---MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
L F+I S + +P + K ++ ++ EI+ TGKL LE V+ + G
Sbjct: 293 LNFEITSINDCDVVPMLKKKDGKIRKYVGEILNTGKLKALEELRARPDVKACLELCGIHG 352
Query: 303 IGPATAQKLYEKGHRTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+GP TA+ L+ KG+ T+ DL+ E+ LT +Q++GLKY+++ K RIPR EV + ++
Sbjct: 353 VGPVTARSLFAKGYATVADLRARAPENLLTPAQKIGLKYYEEFKERIPREEVGFIATAVR 412
Query: 360 KAGEEVLP-EVIILCGGSYRRGKASCGDLDVVI 391
+A EV C GS+RRGK + GD+DV++
Sbjct: 413 EAANTFQKDEVHCYCVGSFRRGKETSGDIDVLV 445
>gi|171692149|ref|XP_001910999.1| hypothetical protein [Podospora anserina S mat+]
gi|170946023|emb|CAP72824.1| unnamed protein product [Podospora anserina S mat+]
Length = 618
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 40/337 (11%)
Query: 85 VIRYQWLEDSLRLGEKVSED----LYRIK--LDPEGENIADRVLSQIQGNGNTSSDGESS 138
V + W DSL GE + D +YR + + P + + + + E S
Sbjct: 124 VAKLSWFTDSLSAGEVLPLDDKYAIYRGRKAMQPPPAPASVQTTPTKSTSNILTRAHEDS 183
Query: 139 HRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNT------LSTASASPDF 192
H + SS + + S+G S+ P S +S +T T L ++ D
Sbjct: 184 HPRTPPSSQK-----RYSSQGS------SQKPGSTYASHPVTKTPKRPALLRQTTSEHDL 232
Query: 193 SSHHITDPSLLY-----------NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAI 240
+H P L+ NPP N+ + + I + R L D+ +Y AI
Sbjct: 233 DTHLPPIPPCLHTTYSCQRSTPANPP--NQEFISLLLQ-IRLARTLTGDKIGVRAYSSAI 289
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ PF ++ ++V LPG G+ + QE T+G L + E ++ D K++ + LF ++
Sbjct: 290 ATVAAYPFPFQTQNEVARLPGCGQKIALLYQEYKTSGTLKEAEEYKSDPKLQVLKLFYDI 349
Query: 301 WGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
WG+ TA++ Y KG R +DD+ D LT Q++G+KY+D+ +IPR EVE++ ++
Sbjct: 350 WGVAETTAREFYNKGWRDIDDVVEYGWDGLTRVQQIGVKYYDEFLLKIPRREVEEIGGVI 409
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
K ++ ++ G YRRGK GD+DVV+ H D
Sbjct: 410 LKEANKIEEGFGMVIVGGYRRGKKESGDVDVVLSHRD 446
>gi|156052889|ref|XP_001592371.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980]
gi|154704390|gb|EDO04129.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 845
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 109/185 (58%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N++ EI ++ Y +G+ RS SY +A ++ I + D+ +P IG+ +
Sbjct: 480 PNPNQHTIEILSRMREYYERIGDQWRSRSYLQACCQLKNQLTLIRTYDEAIQIPKIGERI 539
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+ IV TG+L +LE+ E + + + LF ++G+ A K +GHRT DL+
Sbjct: 540 AKKIEGIVLTGRLLRLENAEAEPDDKILKLFMGIYGVNFKLASKWISQGHRTFADLEQNI 599
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ SQ++G+ +++D++ RIPR E+E++ + K + + P++ I GGSYRRG S GD
Sbjct: 600 KLSPSQQIGITHYEDLQLRIPRAEIEELGTHITKTAQSLDPDIEITIGGSYRRGAKSSGD 659
Query: 387 LDVVI 391
+D++I
Sbjct: 660 IDIII 664
>gi|328709018|ref|XP_001950059.2| PREDICTED: DNA polymerase beta-like [Acyrthosiphon pisum]
Length = 336
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 14/215 (6%)
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
N +S A D ++ + L D KN+ NIY+ S +Y KA
Sbjct: 4 NKMSKRKAPSDSTNPNHDFCEFLIELADYEKNVAR------NIYK-------SNAYRKAA 50
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ K +I+S ++ + L GIG + I E + TGKL KL++ D+ +I V
Sbjct: 51 SALAKHGKRIKSGEEAQKLDGIGDKISKKIDEFLETGKLKKLDNIRNDDASVSIKELTRV 110
Query: 301 WGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
GIGPA A++LY+ G +D L KN+D L H Q LGLKY +D + +IPR+EV ++E++++
Sbjct: 111 SGIGPAKAKELYDSGVTNIDILLKNQDKLNHHQILGLKYLNDFEEKIPRNEVIEVEQIIK 170
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
K + P+ + GSYRRGK GD+D +I HP
Sbjct: 171 KTLHNLDPKYKVTICGSYRRGKEFSGDIDTLISHP 205
>gi|67521542|ref|XP_658835.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
gi|40746668|gb|EAA65824.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 109/191 (57%), Gaps = 3/191 (1%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
NP N E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+
Sbjct: 315 NP---NARTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGE 371
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+
Sbjct: 372 RLADKIEEIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRT 431
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT +QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+
Sbjct: 432 KASLTQAQRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATS 491
Query: 385 GDLDVVIMHPD 395
GD+D++I PD
Sbjct: 492 GDIDLIITRPD 502
>gi|259488449|tpe|CBF87890.1| TPA: DNA polymerase POL4, putative (AFU_orthologue; AFUA_1G10480)
[Aspergillus nidulans FGSC A4]
Length = 642
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 107/186 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+ + D
Sbjct: 317 NARTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGERLADK 376
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+ + SLT
Sbjct: 377 IEEIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRTKASLT 436
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+ GD+D+
Sbjct: 437 QAQRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATSGDIDL 496
Query: 390 VIMHPD 395
+I PD
Sbjct: 497 IITRPD 502
>gi|20067703|emb|CAD29093.1| chimeric DNA-directed DNA polymerase bf4-20 [synthetic construct]
Length = 331
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 117/198 (59%), Gaps = 9/198 (4%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI------ILCGGSYRR 379
L H QR+GLKYF+D + RIP + +++ L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRR 190
Query: 380 GKASCGDLDVVIMHPDRK 397
+ D+D++I+ P++K
Sbjct: 191 EEKMLNDVDLLIIVPEKK 208
>gi|58865402|ref|NP_001011912.1| DNA polymerase mu [Rattus norvegicus]
gi|51859148|gb|AAH81868.1| Polymerase (DNA directed), mu [Rattus norvegicus]
gi|149047644|gb|EDM00314.1| rCG35832 [Rattus norvegicus]
Length = 495
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G++ R ++Y+A +++ LP+ + S Q+ GLP G+ IQE++ G ++E
Sbjct: 171 GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRC 230
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 346
E+ +T+ LF ++G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T +
Sbjct: 231 SERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPV 290
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R E E +++L++ A E+LP + G +RRGK D+D +I HP+
Sbjct: 291 SRAEAEALQQLVEAAMREILPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|326437288|gb|EGD82858.1| DNA polymerase beta [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 94/161 (58%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA I P +I S + K L G+G+ + I E ++TGKL KLE D + I
Sbjct: 50 AYRKASRAIAAHPSRISSGKEAKALQGVGEKIAKKIDEFLSTGKLKKLEDIHADPTSKAI 109
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
L V G GPA A+K ++G TL++L + LT +QR+GLK+ D + RIPR EV+++
Sbjct: 110 QLIASVVGFGPAAARKFVDQGVTTLEELAKQSGLTSTQRIGLKHHHDFEERIPRDEVDRL 169
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ EV P++ GSYRRG +S GD+D+++ HP+
Sbjct: 170 RKQAFAIISEVDPKLTAEVCGSYRRGASSSGDIDILMTHPE 210
>gi|390343812|ref|XP_785226.2| PREDICTED: DNA polymerase lambda-like [Strongylocentrotus
purpuratus]
Length = 464
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 183/399 (45%), Gaps = 75/399 (18%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVS 74
S+GIF+G+ VF+++ G+ R I++++LV+ GA V+ + + THV+ +D E +
Sbjct: 29 SSGIFSGLSVFMLQAGLGKARTDIFKKQLVKHGAVVKPAIDDQTTHVI-VDEEMTFPRFC 87
Query: 75 KQHLARFKGS-------VIRYQWLEDSLRLGEKV-------------------------- 101
+ + +++ S +I+ +WL L V
Sbjct: 88 R--IMKYEESQVPDRLMIIKARWLSSCLSEALLVDFEEFILAPVRSEKFKLFTPPKEETK 145
Query: 102 --SEDLYRI--KLDP---EGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHF- 153
SED+ KL+P +G N+ QI G G ++ S R + + S D ++
Sbjct: 146 SKSEDVESSDGKLEPLEVQGSNMPG-TSKQIPGTGASTVTTSPSKRVQARGSDSDDSNYV 204
Query: 154 -----------QAESKGDV-----ETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 197
+ ES+G V ++++ + PN+ S N + + ++ +H
Sbjct: 205 PSDDDGGGSGDEEESRGKVFSSDVDSSSNASTPNTSPSKLPRGNWVCSRPSTAYKETH-- 262
Query: 198 TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK 257
N++ITE L+ Y + R+ Y KAI ++ + + ++
Sbjct: 263 ------------NQHITEKLEVLMKAYENTQDRWRALGYKKAISALKNYGKDVTTWEEAS 310
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317
+PGIG M D I EI+ +G L K++H K E + I LF VWG GP A++ ++G R
Sbjct: 311 AIPGIGTKMADKILEIIESGHLRKIDHVCKGEDMEAIDLFNNVWGAGPTVAREWVQQGFR 370
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
TL+DL+ + L+ Q +GLK++ + R+PR E +ER
Sbjct: 371 TLEDLREKAKLSKQQLIGLKHYHEFLERMPRQEAGDIER 409
>gi|367036979|ref|XP_003648870.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
gi|346996131|gb|AEO62534.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
Length = 613
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y AI I P+ I++A +V LPG G + QE TG++ + E D K+ +
Sbjct: 279 AYSSAIATIAAYPYTIQTAQEVARLPGCGSKIARLFQEFKDTGQIREAREDETDPKLAVL 338
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
LF +WG+ TA+ Y +G R LDD+ DSLT Q++G+KY+D+ +T+IPR EVE
Sbjct: 339 KLFYGIWGVAETTARDFYNRGWRDLDDIVEYGWDSLTRVQQIGVKYYDEFQTKIPRAEVE 398
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + + + ++ G YRRGK GD+DVV+ HPD
Sbjct: 399 AIANTILEHANRIRQGFQMVIVGGYRRGKLESGDVDVVLSHPD 441
>gi|194373665|dbj|BAG56928.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 386 DLDVVIMHPD 395
D+DV+I HPD
Sbjct: 119 DVDVLITHPD 128
>gi|193785442|dbj|BAG54595.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 386 DLDVVIMHPD 395
D+DV+I HPD
Sbjct: 119 DVDVLITHPD 128
>gi|398411186|ref|XP_003856936.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339476821|gb|EGP91912.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 590
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 106/186 (56%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI +++ Y ++ RS +Y +AI V+ K P K+ + ++ LP +G+ +
Sbjct: 265 NLATIEILEQMVKYYTDTRDEWRSRAYRQAISVLRKHPTKVMTKEEALKLPKVGERLAAK 324
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + F V+G G A K ++G+ TLD+L LT
Sbjct: 325 IEEIAVTNRLRRLDNALAEPSDAILQTFMGVYGAGRVVATKWVDQGYTTLDELSKNPDLT 384
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GL++++D +TRIPR EV Q ++ KA ++ P ++ GGSYRRG GD+D
Sbjct: 385 TNQRIGLEHYEDFQTRIPRAEVAQHGEVVLKALHKIDPTFEVIIGGSYRRGAKDSGDIDC 444
Query: 390 VIMHPD 395
+I P+
Sbjct: 445 IITRPN 450
>gi|85102863|ref|XP_961407.1| hypothetical protein NCU01321 [Neurospora crassa OR74A]
gi|11595591|emb|CAC18211.1| related to DNA polymerase Tdt-N [Neurospora crassa]
gi|28922952|gb|EAA32171.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 602
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 4/194 (2%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ E K+ LG+ +Y AI + P+ ++SA +V LPG G
Sbjct: 240 HPP--NEPFIEELMKIRTARTLLGDKIGVRAYSSAIAALISYPYPLQSAFEVARLPGCGL 297
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ QE G+L + + E D ++ + LF E+WG+ TA++ Y KG R LDD+
Sbjct: 298 KIAQLYQEFREQGELQEAKEDESDPRLAVLKLFHEIWGVAETTAREFYNKGWRDLDDIVE 357
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D+LT Q++G+KY+D+ + +I R EVE + ++ + ++ P ++ G YRRGK
Sbjct: 358 YGWDTLTRVQQIGVKYYDEFQQKIARAEVESIANIILEHANKIHPGFQMVIVGGYRRGKL 417
Query: 383 SCGDLDVVIMHPDR 396
+ GD+DVV+ HPD+
Sbjct: 418 ASGDVDVVLSHPDK 431
>gi|340904946|gb|EGS17314.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 626
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
PD+ +++ P+ + NPP N++ + K+ +G+ +Y AI I P
Sbjct: 247 PDYLHTTYSCQRPTPV-NPP--NESFIKELEKIKTARTLMGDRIGVRAYSSAIATIAAYP 303
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ ++A +V LPG G + QE TG++++ + + ++ + LF E+WG+G T
Sbjct: 304 YAFKTAQEVARLPGCGAKIAQLFQEFKDTGQIAEANEDDSNPRLAVLKLFYEIWGVGETT 363
Query: 308 AQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
A+ Y +G R LDD+ DSLT Q++G+KY+D+ K IPR EVE++ + + +
Sbjct: 364 ARSFYNRGWRDLDDIVEYGWDSLTRVQQIGVKYYDEFKQGIPREEVERIANTILEHANAL 423
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
P ++ G YRRGK GD+DVV+ H D
Sbjct: 424 HPGFEMVIVGGYRRGKLKSGDVDVVLSHRD 453
>gi|392587221|gb|EIW76555.1| hypothetical protein CONPUDRAFT_63239 [Coniophora puteana
RWD-64-598 SS2]
Length = 683
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 113/188 (60%), Gaps = 7/188 (3%)
Query: 210 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ + +L+ +++A +DR R FSY K I ++ P +I+S Q + + G+G+
Sbjct: 347 NQDVVDALEQLMELHKAKSSEDDRWRVFSYGKCIRALKNHPKRIKSLSQARAIRGVGEKT 406
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TG L +++ +E E V +F ++G+G TA Y G RTLDD+K
Sbjct: 407 AMKIMEIIETGGLKRIQ-YENTEDVEATKIFQGIYGVGRNTAFAWYANGCRTLDDIKMCK 465
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ Q +G+K++DDI TRIPR EV+++ ++ ++ P++ I GS+RRGKA
Sbjct: 466 GGIKVSAVQEIGIKFYDDINTRIPRAEVQEIFDRIKSVALDMDPKLFIEVMGSFRRGKAD 525
Query: 384 CGDLDVVI 391
CGD+DV+I
Sbjct: 526 CGDIDVLI 533
>gi|20067713|emb|CAD29142.1| chimeric DNA-directed DNA polymerase bf2-7 [synthetic construct]
Length = 329
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + RI + + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRILIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 190
Query: 381 KASCGDLDVVIMHPDRK 397
+ D+D++I+ P++K
Sbjct: 191 EKMLNDVDLLIIVPEKK 207
>gi|302662510|ref|XP_003022908.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
gi|291186880|gb|EFE42290.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
Length = 652
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 44/391 (11%)
Query: 32 QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHLA--------R 80
Q RR++I R +++ GAT K VTH++A ++ E +++ + +
Sbjct: 131 QARRIRISR--VLKFGATRAAKFDASVTHIVAERRLNYEDVVEYLQVSSVPANIILVNEN 188
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKL----DPEGENIADRVLSQIQGNGNTSSD-- 134
+ I + + D+ S ++IK +P G + +R I N + +D
Sbjct: 189 YPSECIMNRRILDA-------SSPRFQIKRKLLSEPHGISSGERRHDCIPANSSRGTDSK 241
Query: 135 --GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN----------- 181
G+ S + + + F A+ D + + L+ + P+ S +
Sbjct: 242 KVGDRSTEEAVPILPGHLPDFPAKDTADQDVDQLTYS--KPLDSSDEEDDEIVPGGFQSG 299
Query: 182 -TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
T S F+ + D + P N E+ +++N Y + R +Y +AI
Sbjct: 300 LTTDCPSWQKSFTCMNKMDGKDRADNP--NARTIEVLQQMLNYYERTADQWRCLAYRRAI 357
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ + K+ S Q + GIG+ + I+EIV T +L +LE + +S F +
Sbjct: 358 AALRRERNKVVSKSQALKIKGIGERLAAKIEEIVWTNRLRRLEQANMEPSDALLSQFLNI 417
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
+G+G A K +G+++LDDLKN +LT +Q++G++ +DD + RIPR EVE ++++
Sbjct: 418 YGVGYQQASKWVAQGYKSLDDLKNRANLTTNQKIGIERYDDFQKRIPREEVEAHGAIVRE 477
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
A + ++ GGSYRRG A GD+D++I
Sbjct: 478 AVVAMDSSYTVITGGSYRRGAADSGDIDLII 508
>gi|354485251|ref|XP_003504797.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Cricetulus griseus]
gi|344252516|gb|EGW08620.1| DNA polymerase mu [Cricetulus griseus]
Length = 491
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G + R S+Y+A V++ LP + S Q++GLP G+ IQE++ G ++E
Sbjct: 168 GNEGRLLSFYRAASVLKSLPCPVTSLSQLQGLPHFGEHSSRVIQELLEHGACEEVERVRC 227
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 346
E+ +T+ LF +++G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T +
Sbjct: 228 SERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPV 287
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R + E +++L++ A + LP + G +RRGK+ D+D +I HP+
Sbjct: 288 GRADAEALQQLVEAAVRQTLPGATVTLTGGFRRGKSQGHDVDFLITHPE 336
>gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator]
Length = 333
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y A ++ LP +I++A + LPGIGK + DHI E + TG +L+ +KD+K I
Sbjct: 41 NYRNAAEMLSALPGRIKNAYEAMKLPGIGKKIADHINEFLETGTHKELQQVKKDDKQDAI 100
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
L ++ GIGPA A++L G TL+DLK +ED L QR+ LKYFDD + +I R E+ +
Sbjct: 101 ILLMKIPGIGPAKAEQLISAGIETLEDLKQHEDKLNRQQRIELKYFDDFEKKITRDEIMR 160
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+E L + A EE+ + ++ GSYRRG + V+ HPD K
Sbjct: 161 IENLFKDAIEELDNKYLVTFCGSYRRGLEDNEPIIAVVTHPDYK 204
>gi|196004564|ref|XP_002112149.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
gi|190586048|gb|EDV26116.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
Length = 337
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSM 266
++N + +L + + + FS Y KA V+ K P +I S Q K L GIG+ +
Sbjct: 12 NVNAEFCDFLIELADYEKNVNRQMHKFSAYRKAANVLAKHPQRITSGAQAKKLEGIGEKI 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNE 325
I+E + TG L KL D+ I+ V GIGPA A+K ++KG ++++DL K +
Sbjct: 72 AQKIEEFINTGSLKKLNKIRADDTTVAINELTRVTGIGPAAARKFFDKGIKSIEDLRKQQ 131
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L H Q++GL+Y DD + RIPR V + E +++K V + GSYRRG S G
Sbjct: 132 ILLNHHQQIGLRYVDDFEKRIPRKMVTEFEAIIKKNIHSVDTAYTVEVCGSYRRGAESSG 191
Query: 386 DLDVVIMHP 394
D+D ++ HP
Sbjct: 192 DIDFLLSHP 200
>gi|340516221|gb|EGR46471.1| predicted protein [Trichoderma reesei QM6a]
Length = 595
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 147/330 (44%), Gaps = 37/330 (11%)
Query: 85 VIRYQWLEDSLRLG-------------EKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT 131
V++ WL DSL G K+S + ++ D S++ +
Sbjct: 117 VVKLAWLLDSLERGVALPVQDYLLYRGRKISSQSLQASTPATPKSQTDEEASRLSHAAKS 176
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDV---ETNALSEAPNSPMSSESLTNTLSTASA 188
S +S R I SST S+ ET + + P P+ E L T S
Sbjct: 177 SPSARTS-RPGISSSTASDSARAGRSEPPTLYHETTSEHDMPLPPIP-EYLHTTYSCQRP 234
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
SP NPP+ I E+ K I R L D +Y +I + P
Sbjct: 235 SP-------------VNPPN-AAFIAEL--KAIRTLRLLRGDHIGVRAYSTSIASLAAYP 278
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ I+ +++ LPG G + Q+ TG E D ++ + +F E+WG+G T
Sbjct: 279 YAIQRPQEIERLPGCGVKIARLYQQWTLTGSTDDTRAAETDTEMAVLKMFYEIWGVGDVT 338
Query: 308 AQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
A++ Y KG R LDD+ +SL+ Q++G+K++D+ + RIPR E E + ++ V
Sbjct: 339 ARQFYNKGWRDLDDIVEYGWNSLSRVQQIGVKFYDEFQLRIPRQETEAISSVILSHAHRV 398
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
P ++ GSYRRGK + GD+DV++ HPD
Sbjct: 399 DPGFQMVVVGSYRRGKPTSGDVDVIVSHPD 428
>gi|303283880|ref|XP_003061231.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457582|gb|EEH54881.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 368
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 16/197 (8%)
Query: 205 NPP---DLNKNITEIFGKLINIY-RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
+PP +LN +IT+ L IY + LG+ ++ ++ A I+ LPFK +Q+ P
Sbjct: 13 DPPKGVNLNAHITDKLEDLAEIYDKVLGDPYKAKNHNLAANAIKDLPFKATRIEQLVDPP 72
Query: 261 GIG------KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
I +++ I EI+TTG+L KLE +++++V + VWG+G A A+ L+
Sbjct: 73 VIPAMASKRSTVRGKINEILTTGRLQKLEELKRNDRVVAVRELTRVWGVGEAKARHLFNV 132
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G +T++ L+ Q +GLKYFD+ R+PR E + +++A P + +
Sbjct: 133 GIKTVNQLRAR------QMIGLKYFDEFDQRMPREEASAIAGYVERAARRACPGCVAVAA 186
Query: 375 GSYRRGKASCGDLDVVI 391
GSYRRGK +CGDLDV+I
Sbjct: 187 GSYRRGKPTCGDLDVLI 203
>gi|167527506|ref|XP_001748085.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773503|gb|EDQ87142.1| predicted protein [Monosiga brevicollis MX1]
Length = 369
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 1/189 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N I + +L + R + + + +Y KA I + S + L G+GK + +
Sbjct: 31 NAEICDFLNQLADYERNVSRNIHKYNAYRKAARSIAAHSLPLRSGKDAQRLDGVGKKIGE 90
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+E +TTG L KL+ + + I L V G GPA AQ +KG TL+ LK ED L
Sbjct: 91 KIEEFLTTGGLKKLDKINANPEAAAIQLIASVVGFGPAAAQNYVQKGITTLEALKQEDGL 150
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+++Q++GLK+F D RIPR EVE + + + EV + GS+RRG A+ GD+D
Sbjct: 151 SNAQKIGLKHFADFNERIPRAEVEALRQAVFAELREVDDRLEGQVCGSFRRGAATSGDID 210
Query: 389 VVIMHPDRK 397
+++ HPD K
Sbjct: 211 ILLTHPDFK 219
>gi|440637853|gb|ELR07772.1| hypothetical protein GMDG_00395 [Geomyces destructans 20631-21]
Length = 784
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ Y + + R Y KAI ++K I +A + LP IG+ + D
Sbjct: 457 NARTISILQEMAAYYTRMDDTWRPIGYRKAITTLKKQNKLISTAGEAVKLPAIGQRIADK 516
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T KL +L++ + D + LF ++G+G A A ++G+ TL+DL SLT
Sbjct: 517 IEEIVHTDKLRRLDNTKSDRNDMILQLFLGIYGVGIAQATTWLQQGYTTLEDLLAHASLT 576
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QRLG+ ++ D +TRIPR EV + +++ + + + GSYRRG SCGD+DV
Sbjct: 577 DNQRLGIDHYQDFQTRIPRAEVSALAKIVADTARGIDRGIEAIVAGSYRRGAESCGDIDV 636
Query: 390 VI 391
++
Sbjct: 637 LL 638
>gi|395329013|gb|EJF61402.1| hypothetical protein DICSQDRAFT_60488 [Dichomitus squalens LYAD-421
SS1]
Length = 787
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 105/172 (61%), Gaps = 6/172 (3%)
Query: 228 GEDRR--SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
GED R + KAI + + P +I + ++ L G+G+ I EI+ TG L +++ +
Sbjct: 474 GEDDRWRVYGLNKAIAALRRCPTRIRTLEEAMKLNGVGEKTARKIIEIIQTGDLMRIQ-Y 532
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDI 342
E E ++ + F ++G+G TA+ L+ G RTL+D+ K L+H+Q +GL+Y+ DI
Sbjct: 533 ETTEDIKAVKEFTGIYGVGANTARTLFNNGCRTLEDIAARKGGVKLSHAQEIGLRYYRDI 592
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
TRIPR EV+++ ++ ++ P++ I GS+RRGK++CGD+D++I P
Sbjct: 593 NTRIPRAEVQEIYDKIKGEALKLDPKLFIQVMGSFRRGKSTCGDIDILISRP 644
>gi|358400398|gb|EHK49729.1| hypothetical protein TRIATDRAFT_174080, partial [Trichoderma
atroviride IMI 206040]
Length = 607
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 45/338 (13%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V++ WL DSL + D Y + L ++ SQ + + + S R+++K
Sbjct: 117 VLKLAWLLDSLEQDAALPVDDYLLYL-------GRKLPSQPKKDTTPKT---SPSRQRLK 166
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS--------------- 189
V AE + +S +P+SP ++ T++ ST S
Sbjct: 167 GRASAVLARAAEDQ-----QGISTSPHSPQAARRRTHSPSTPSGRKRAEPPTLYRETTSE 221
Query: 190 --------PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
PDF +++ PS + NPP N E + + G+ +Y +
Sbjct: 222 HDIPLPPIPDFLHTTYSCQRPSPV-NPP--NAAFIEELKDVRKLRLLQGDKVGVRAYSTS 278
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
I + PF I+ +++ LPG G ++ +E + G ++ + + ++ + F E
Sbjct: 279 IASLAAYPFLIQRPQEIERLPGCGGKIEKLYREWMADGCTAETKAAAVNTELTVLRKFYE 338
Query: 300 VWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
+WG+ ATA++ ++KG R LDD+ SL +Q++G+KY+DD + RIPR E E +
Sbjct: 339 IWGVADATAREFFKKGWRDLDDIVEHGWSSLQRAQQIGVKYYDDFQLRIPRAETEAIANA 398
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + P ++ GSYRRGKA GD+DV+I HPD
Sbjct: 399 ILTHARRINPGFQMVIVGSYRRGKAESGDVDVIISHPD 436
>gi|426193747|gb|EKV43680.1| hypothetical protein AGABI2DRAFT_227537 [Agaricus bisporus var.
bisporus H97]
Length = 695
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 118/196 (60%), Gaps = 9/196 (4%)
Query: 207 PDLNKNITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
P +N++I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 355 PCVNQDILEKLQELQELHKAKIGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVG 414
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP--ATAQKLYEKGHRTLDD 321
I+EI+ TG L ++ +FEK + V+ LF ++G+G +TA K Y G RTL+D
Sbjct: 415 DKTALKIKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGKCQSTAFKWYSAGCRTLED 473
Query: 322 LKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+++ L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+R
Sbjct: 474 LRSQKGGVRLSSVQMIGLQYYDDINDRMPRSEAKALFELVKPIALSFDSKLFVEIMGSFR 533
Query: 379 RGKASCGDLDVVIMHP 394
RGKA CGD+D++I P
Sbjct: 534 RGKADCGDIDILITRP 549
>gi|336266798|ref|XP_003348166.1| hypothetical protein SMAC_04011 [Sordaria macrospora k-hell]
gi|380091102|emb|CCC11308.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 604
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 107/193 (55%), Gaps = 4/193 (2%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ E K+ LG+ +Y AI + P+ ++S +V LPG G
Sbjct: 242 HPP--NEPFIEELMKIRTARTLLGDKIGVRAYSTAIAALTSYPYPLQSTLEVARLPGCGF 299
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ E G+L + + E D ++ + LF E+WG+ TA++ Y KG R LDD+
Sbjct: 300 KIAQLYGEFREHGELQETKEDESDPRIAVLKLFYEIWGVAETTAREFYNKGWRDLDDIVE 359
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D+LT Q++G+KY+D+ + ++PR EVE + +++ + ++ P ++ G +RRGK
Sbjct: 360 YGWDTLTRVQQIGVKYYDEFQQKVPRGEVESISQIILEHANKIHPGFQMVIVGGHRRGKL 419
Query: 383 SCGDLDVVIMHPD 395
S GD+DVV+ HPD
Sbjct: 420 SSGDVDVVLSHPD 432
>gi|327299906|ref|XP_003234646.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
gi|326463540|gb|EGD88993.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
Length = 651
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 191/415 (46%), Gaps = 39/415 (9%)
Query: 14 DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEA 68
D + G+ ++ + Q RR++I R +++ GAT K VTH++A ++ E
Sbjct: 95 DHPSVLNGLVLYFIPNDDISQARRIRISR--VLEFGATRATKFDSSVTHIVAERRLNYED 152
Query: 69 LLQ--QVSKQHL------ARFKGSVIRYQWLEDSLRLGEKVSEDLY-RIKLDPEGENIAD 119
+++ QVS + + I + + D+ ++ L ++ P GE D
Sbjct: 153 VVEYLQVSSVPVNIILVNENYPSECIMNRRILDASSPRFQIKRKLLPEPQVIPSGEPRHD 212
Query: 120 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
+ + ++ G S + + + HF A+ D + S+ + ++ +
Sbjct: 213 CIPTNSSRGTDSKKAGTKSTEEAVPVPPGHLPHFPAKDTADQDGMQASDPDHLDLAIRHI 272
Query: 180 TNTLSTASASPD----------FSSHHITD-PSLLYNPPDLNK------------NITEI 216
N + S D F S TD P+ + +NK ++
Sbjct: 273 KNIAALPLDSSDEEDDEIVPGEFQSGLTTDCPAWQKSFTCMNKMDGKDRADNPNSRTIDV 332
Query: 217 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276
++++ Y + R +Y +AI + + K+ S Q + GIG+ + I+EIV T
Sbjct: 333 LQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALKIKGIGERLAAKIEEIVWT 392
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
+L +LE + + +S F ++G+G A K +G+++LDDLKN +LT +Q++G+
Sbjct: 393 NRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLTTNQKIGI 452
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D++I
Sbjct: 453 ERYDDFQKRIPREEVEAHCAIVREAVLAMDSSYTVIIGGSYRRGGADSGDIDLII 507
>gi|20067675|emb|CAD29079.1| chimeric DNA-directed DNA polymerase bf4-1 [synthetic construct]
Length = 325
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 7/196 (3%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHE--VEQMERLLQKAGEEVLPEVI---ILCGGSYRRGK 381
L H QR+GLKYF+D + R+ + + V + L L +++ I+ GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREE 190
Query: 382 ASCGDLDVVIMHPDRK 397
D+D++I+ P++K
Sbjct: 191 KMLNDVDLLIIVPEKK 206
>gi|395508711|ref|XP_003758653.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sarcophilus
harrisii]
Length = 530
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N TE L G + R S+ +A V++ LP I S Q++GLP G
Sbjct: 187 NLCFTEALDTLAEAAGFEGSEGRFLSFRRAASVLKALPGPITSISQLRGLPHFGDHSSRI 246
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 328
+QE++ G S++E ++ E+ +T+ LF ++G+G TA K Y G R+L DL+ + L
Sbjct: 247 VQELLECGVSSEVERIKQSERYQTMKLFTHIFGVGVKTADKWYRDGLRSLADLQGQTRKL 306
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ Q G+ +F+D+ T + RHE E ++R+++KA +VLP + G +RRGK D+D
Sbjct: 307 SRQQEAGICHFEDLNTLVWRHEAEAIQRVVEKAVRQVLPGATVTLTGGFRRGKLQGHDVD 366
Query: 389 VVIMHP 394
+I HP
Sbjct: 367 FLITHP 372
>gi|346979683|gb|EGY23135.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 381
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 6/193 (3%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
NPP N E ++ + LG++ +Y AI + P+ I ++ LPG G
Sbjct: 23 NPP--NNEFVEALKEIRTTRKLLGDEIGVRAYSTAIATVAAYPYAISTSPAR--LPGCGS 78
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ + + TTG L +++ +++ ++ LF +WG+G TA++ Y+KG R LDDL
Sbjct: 79 KIAELYHQWKTTGSLGEIDSSQQEARLPVFRLFYNIWGVGDTTAREFYKKGWRDLDDLVE 138
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D L+ Q++G+KY+D+ IPRHEVE + + + +E+ P + G +RRGK
Sbjct: 139 YGWDRLSRVQQIGVKYYDEFLQPIPRHEVEAIAATILRQAQEIEPGFQLTIVGGHRRGKK 198
Query: 383 SCGDLDVVIMHPD 395
S GD+DV++ H D
Sbjct: 199 SSGDVDVILSHAD 211
>gi|20067687|emb|CAD29085.1| chimeric DNA-directed DNA polymerase bf4-11 [synthetic construct]
Length = 324
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRK 397
+ D+D++I+ P++K
Sbjct: 189 EKMLNDVDLLIIVPEKK 205
>gi|20067707|emb|CAD29095.1| chimeric DNA-directed DNA polymerase bf2-2 [synthetic construct]
Length = 327
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRK 397
+ D+D++I+ P++K
Sbjct: 189 EKMLNDVDLLIIVPEKK 205
>gi|20067691|emb|CAD29087.1| chimeric DNA-directed DNA polymerase bf4-13 [synthetic construct]
Length = 326
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRK 397
+ D+D++I+ P++K
Sbjct: 189 EKMLNDVDLLIIVPEKK 205
>gi|340507938|gb|EGR33773.1| DNA-directed polymerase lambda, putative [Ichthyophthirius
multifiliis]
Length = 325
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
KL IY+ + R+ +Y +AI +++ +I+S + +K + GIG ++ IQEI+ G
Sbjct: 4 KLYQIYQQEKDLGRTIAYRRAISILQGHKQQIQSKEDIKKIKGIGDKIKLKIQEILQNGT 63
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLK 337
K+++ DEK +I++ +VWGIG TA LY+KG +T++ LK N+ L +Q++GLK
Sbjct: 64 CEKIQNLINDEKNISINILSKVWGIGTNTAHILYKKGIKTIEQLKQNQHLLNKNQKIGLK 123
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGKASCGDLDVVIM 392
Y+D++ R+ R E ++ + +Q+ + + P+ II C GSYRR K +CGD+D++I
Sbjct: 124 YYDELNKRMHREEATKIIQKVQEQIKILYPKQYDKYNIIAC-GSYRREKETCGDVDILIC 182
Query: 393 HPD 395
D
Sbjct: 183 RND 185
>gi|145350970|ref|XP_001419864.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580096|gb|ABO98157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 117/195 (60%), Gaps = 9/195 (4%)
Query: 206 PPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
P + N + ++ ++ I + AL E ++ Y A + L F+++S DQV +P + K
Sbjct: 2 PLECNSKVADLLSEMAKINQDALREVYKAKQYAAAASALRSLNFEVQSIDQVDVIPMLKK 61
Query: 265 ---SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
++ ++QEI+TTGKL+ L+ + V++ + G+GP TA+KL++KG+++L D
Sbjct: 62 RDGKIRKYVQEILTTGKLTALQSLRQRPDVKSCVELSGIHGVGPVTARKLFDKGYKSLAD 121
Query: 322 LKN----EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-EVIILCGGS 376
L+ D+LT +Q +GLKY+++ K RIPR EV + +++A + EV C GS
Sbjct: 122 LRAPGVPRDTLTPTQWIGLKYYEEFKQRIPREEVSHIATAVREAANTFMKDEVRCYCVGS 181
Query: 377 YRRGKASCGDLDVVI 391
+RRGKA GD+DV++
Sbjct: 182 FRRGKADSGDVDVLV 196
>gi|145506893|ref|XP_001439407.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406591|emb|CAK72010.1| unnamed protein product [Paramecium tetraurelia]
Length = 616
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 8/194 (4%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY + R +Y KAI ++ LP+ I+S++ +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKDKGRCIAYRKAIGFLKALPYPIKSSEDLKDMPTIGDKIKKK 349
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I EI+ TGKL+K++ E EK IS VWGIGP TA Y KG +TL+DL KN L
Sbjct: 350 IIEIMQTGKLTKVQKLEGQEKNVAISELTRVWGIGPTTAATFYFKGIKTLEDLKKNLHLL 409
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-----AGEEVLPEVIILCGGSYRRGKAS 383
+Q++GL+ D++ RIPR E + ++++ +G + L + GSYRR K +
Sbjct: 410 NRNQQVGLQLVKDLEQRIPREEATLIFEIVKREIDDLSGVQGLFKAT--ACGSYRREKET 467
Query: 384 CGDLDVVIMHPDRK 397
CGD+D++I D K
Sbjct: 468 CGDMDILITRCDGK 481
>gi|426227873|ref|XP_004008039.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Ovis aries]
Length = 488
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQISFYRAASVLKALPSSVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTLDDL+ E L
Sbjct: 209 VQELLEHGVCDEVERIRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLDDLQEESHRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R EVE ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSALILRSEVETLQQVVEAAVTQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHP 394
+I HP
Sbjct: 329 FLITHP 334
>gi|291394899|ref|XP_002713892.1| PREDICTED: DNA-directed DNA polymerase mu-like [Oryctolagus
cuniculus]
Length = 495
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 1/193 (0%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P N ++E L G + R S+ +A V+ LP + + Q++GLP G+
Sbjct: 150 PHHNTALSEALETLAEAAGFEGSEGRLLSFRRAASVLRALPRPVTAHSQLQGLPHFGEHS 209
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
+QE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLDDL+ +
Sbjct: 210 SRVVQELLEHGVCEEVERVRSSERFRTMKLFTQIFGVGVRTADRWYQEGLRTLDDLRQQP 269
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT QR GL+Y D+ T + R E E ++ L++ A + LP + G +RRGK
Sbjct: 270 RRLTAQQRAGLQYHQDLSTPVQRPEAEALQHLVEAAVGQALPGATVTLTGGFRRGKLLGH 329
Query: 386 DLDVVIMHPDRKR 398
D+D +I HP R
Sbjct: 330 DVDFLISHPKEGR 342
>gi|334313404|ref|XP_003339896.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Monodelphis domestica]
Length = 497
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 109/186 (58%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G R S+++A V++ LP I + Q+ GLP IG
Sbjct: 156 NFHLTEALETLAEAADFEGSQGRFISFHRAASVLKALPDPITNMSQLHGLPHIGDHSSRI 215
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
IQE++ G +++E + ++ +T+ LF +++G+G TA + Y++G RTLDDL K+ L
Sbjct: 216 IQELLEHGVSNEVETIKLSKRYQTMKLFTQIFGVGVKTADRWYQEGLRTLDDLQKHSRKL 275
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q G+ +F+D+ T + RHE + +++++++ +++LP ++ G +RRGK D+D
Sbjct: 276 TRQQEAGIHHFEDLNTPVYRHEADAIQQIVEEVVQQMLPGARVILAGGFRRGKPHGHDVD 335
Query: 389 VVIMHP 394
+I HP
Sbjct: 336 FLITHP 341
>gi|410951920|ref|XP_003982640.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Felis catus]
Length = 458
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R S+Y+A +++ LP ++ + Q++GLP G+
Sbjct: 150 NSSLTEPLEMLAEAAGFEGSEGRFLSFYRAASMLKALPSRVTAMSQLQGLPHFGEHSCRV 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
IQE++ G ++E E+ +T+ LF ++G+G TA + Y +G RTLD L+ + L
Sbjct: 210 IQEVLAQGVCEEVERIRCSERYQTMKLFTGIFGVGVKTADRWYREGLRTLDSLQEQPQRL 269
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL+++ D+ + R +VE ++R+++ A +LP + G +RRGK D+D
Sbjct: 270 TQQQKAGLRHYQDLSVPLQRPQVEALQRVVEAAVGHILPGATVTLAGGFRRGKLQGHDVD 329
Query: 389 VVIMHPDRKR 398
++ HP R
Sbjct: 330 FLLTHPQEGR 339
>gi|351697151|gb|EHB00070.1| DNA polymerase mu [Heterocephalus glaber]
Length = 493
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+ +A V+ LP+ + Q++GLP G+
Sbjct: 152 NSSLSEALETLAEAAGFEGSEGRLLSFCRAASVLRALPWPVTVLSQLQGLPNFGEHSSRI 211
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G +++ E+ RT+ LF +V+G+G TA + Y++G RTLD+L+ + L
Sbjct: 212 VQELLERGVCEEVKRVRSSERYRTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRL 271
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T QR GL++ D+ T + R + E ++RL++ + LP ++ G +RRGK D+D
Sbjct: 272 TRQQRAGLQHHRDLCTPVGRPDAEALQRLVEATVGQALPGATVMLTGGFRRGKLQGHDVD 331
Query: 389 VVIMHPDRKR 398
+I HP+ R
Sbjct: 332 FLITHPEEGR 341
>gi|406604333|emb|CCH44175.1| DNA nucleotidylexotransferase [Wickerhamomyces ciferrii]
Length = 530
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 92/168 (54%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE ++ +Y AI + I A++ L GIG S+ I+EIV T LS L +
Sbjct: 174 GEHFKAKAYKNAINALNNTGDFISDANEALRLKGIGVSVAQKIEEIVKTNTLSSLNEIKS 233
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
D++ + LF + G+GP +A+K Y G RTL+D+ + LT +Q LGLKY+D+ RIP
Sbjct: 234 DKEHQVSKLFMGIHGVGPVSAKKWYNDGLRTLEDVSQKPDLTSNQTLGLKYYDEWLERIP 293
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R E + ++ P V GGSYRRG +CGD+D +I P+
Sbjct: 294 RDECTLHNEFMSDLVSQIDPLVQFTIGGSYRRGSPTCGDVDFIITKPN 341
>gi|171687419|ref|XP_001908650.1| hypothetical protein [Podospora anserina S mat+]
gi|170943671|emb|CAP69323.1| unnamed protein product [Podospora anserina S mat+]
Length = 830
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 105/183 (57%), Gaps = 1/183 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVI-EKLPFKIESADQVKGLPGIGKSMQD 268
N E+ + + Y + + R +Y +AI + ++ KI +A++ LP IG +
Sbjct: 503 NARTIEVLQSMCDYYTKINDRWRITAYRRAITTLRQQTTKKITTAEEAYTLPNIGSRIAR 562
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+EI TT L +L++ + + + LF ++ +G + A K +GHRTL+DL + L
Sbjct: 563 KIEEICTTNNLHRLQYANLEPTDKVLDLFLKIHDVGLSRANKWISQGHRTLEDLLTKADL 622
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ +QR+ ++++ D+ +RIPR EV Q+ +Q+ V P+V +L GGSYRRG + GD+D
Sbjct: 623 SANQRVSIEHYSDLTSRIPRSEVTQLAAFVQREAFLVDPDVELLVGGSYRRGSDTSGDID 682
Query: 389 VVI 391
+I
Sbjct: 683 FII 685
>gi|156370197|ref|XP_001628358.1| predicted protein [Nematostella vectensis]
gi|156215332|gb|EDO36295.1| predicted protein [Nematostella vectensis]
Length = 336
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 207 PDLNKN------ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
PD N N +TE+ N+ R + + +Y KA V+ K KI+ + + LP
Sbjct: 7 PDQNPNSEFCDFLTELADYEKNVTRQI---HKYNAYRKAAAVLAKHSTKIKDGAEARKLP 63
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
GIG + I E + TGKL KLE KDE V GIGPA A+KL E G +L+
Sbjct: 64 GIGDKIGKKIDEFIKTGKLEKLEKIRKDEGTSITKELTRVSGIGPAAAKKLIEDGVSSLE 123
Query: 321 DLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DLK L H Q++GLKY D+ +TRIPR E+ ++ ++ ++ + GS+RR
Sbjct: 124 DLKRVRGRLNHHQQIGLKYVDEFETRIPREEMIKLRDIVLVHVKKQDKNLTATVCGSFRR 183
Query: 380 GKASCGDLDVVIMHPD 395
G S GD+D+++ HPD
Sbjct: 184 GATSSGDIDILLSHPD 199
>gi|302496957|ref|XP_003010479.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
gi|291174022|gb|EFE29839.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
Length = 671
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 104/182 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ S Q + GIG+ +
Sbjct: 346 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALEIKGIGERLAAK 405
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + +S F ++G+G A K +G+++LDDLKN +LT
Sbjct: 406 IEEIVWTNRLRRLEQANMEPSDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLT 465
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EV+ ++++A + ++ GGSYRRG A GD+D+
Sbjct: 466 TNQKIGIERYDDFQKRIPREEVKAHGAIVREAVVAMDSSYTVIIGGSYRRGAADSGDIDL 525
Query: 390 VI 391
+I
Sbjct: 526 II 527
>gi|311977701|ref|YP_003986821.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|81990391|sp|Q7T6Y4.2|DPOLX_MIMIV RecName: Full=Probable DNA polymerase family X
gi|55664862|gb|AAQ09576.2| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|308204336|gb|ADO18137.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|339061254|gb|AEJ34558.1| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|351737472|gb|AEQ60507.1| DNA polymerase family X [Acanthamoeba castellanii mamavirus]
gi|398257158|gb|EJN40766.1| DNA polymerase family X [Acanthamoeba polyphaga lentillevirus]
Length = 354
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKVRTI 294
KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++ I
Sbjct: 44 KALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQIEGI 103
Query: 295 SLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPR 348
V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++ IPR
Sbjct: 104 QELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRDIPR 163
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K
Sbjct: 164 KEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMK 212
>gi|315053014|ref|XP_003175881.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311341196|gb|EFR00399.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 653
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 104/182 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + ++ + Q + GIG+ +
Sbjct: 328 NFRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRENERVMTKSQALKIRGIGERLAAK 387
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + K +S F ++G+G A K +G+++LDDLKN LT
Sbjct: 388 IEEIVWTNRLRRLEQANMEPKDVLLSQFLNIYGVGYQQASKWIAQGYKSLDDLKNRAHLT 447
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 448 TNQRIGIERYDDFRKRIPREEVETHGAIVREAVLTMDKSYTVIIGGSYRRGAADSGDIDL 507
Query: 390 VI 391
++
Sbjct: 508 IL 509
>gi|294953719|ref|XP_002787904.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
gi|239902928|gb|EER19700.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
Length = 420
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 25/227 (11%)
Query: 191 DFSSHHITD--PSLLYNPPDLNKNITEIFGKL-INIYRALG--EDRRSFSYYKAIPVIEK 245
D SS + D P+L D NK +++IF L N+ G ++ RS SY +A I+K
Sbjct: 51 DDSSRGVVDRKPTL-----DCNKKLSQIFRDLEANLRHNKGSSDEFRSRSYRRAADKIDK 105
Query: 246 LPFKIESADQVKGLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
L + +++ V+ GIG I+E V TG + K E E+ I V
Sbjct: 106 LGYPLDTDAAVEHFASECGSGIGAKTMQKIREFVNTGSVKKAEVIGTAERAIGIRELTSV 165
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
WG+G +TA+K Y G R++D L++ S L H+Q++GLKYF++ +IPR EVE++ +
Sbjct: 166 WGVGVSTAEKWYAMGIRSVDALRHSGSIEQLNHNQKIGLKYFEEFNCKIPRQEVEEISTV 225
Query: 358 LQKAGEEV-------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ ++ L ++ GSYRRGKA CGD+D +I H R+
Sbjct: 226 VLAGVDQATRAKYGGLEHFNVVVCGSYRRGKAMCGDVDFLITHRSRQ 272
>gi|440639014|gb|ELR08933.1| hypothetical protein GMDG_03600 [Geomyces destructans 20631-21]
Length = 678
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 118/212 (55%), Gaps = 10/212 (4%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL 246
PD+ +S+ + LY LN E + I R L +D +Y +I +
Sbjct: 290 PDYLKTSYSCQRTTPLYT---LNDPFIEFLVR-IRQSRILTDDEVGVRAYSTSIASLAAY 345
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
P I +A+++ LPG + + QE TG + ++ +KD +++T++LF E+WG+GP
Sbjct: 346 PHTISTAEEILHLPGCSERIAALWQEFNDTGHIGAVDDIDKDPEMQTLNLFYEIWGVGPK 405
Query: 307 TAQKLY-EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
A+ Y KG R LDD+ ++L+ Q++G+KY+++++ +IPR EVE++ ++ +A
Sbjct: 406 GARDFYYRKGWRDLDDVVEFGWNNLSRVQQIGVKYYEELQQKIPRDEVERIGAVILEAAN 465
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P + G YRRGK GD+DVV+ +PD
Sbjct: 466 HVAPGCQMTIVGGYRRGKPESGDVDVVVSNPD 497
>gi|402878106|ref|XP_003902744.1| PREDICTED: DNA polymerase beta-like, partial [Papio anubis]
Length = 218
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 37/208 (17%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD------- 320
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSC 130
Query: 321 ----------------------------DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
DL KNED L H QR+GLKYF D + RIPR E+
Sbjct: 131 PIKGHLNGTKSLLDLIWDVTTIFKLKNADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEM 190
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRR 379
QM+ ++ ++V E I GS+RR
Sbjct: 191 LQMQDIVLNEVKKVDSEYIATVCGSFRR 218
>gi|443726229|gb|ELU13471.1| hypothetical protein CAPTEDRAFT_183536 [Capitella teleta]
Length = 299
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA I K P KI S + K L G+G + I E + TGKL K+E ++ I
Sbjct: 6 AYRKAAGAIAKHPEKINSGKEAKKLEGVGDKIGKKIDEFIATGKLVKIEKIRANDTNMAI 65
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGPA AQKL +G +++DL KN++ L Q +GLK+F+D + RIPR E+ Q
Sbjct: 66 NALTRVTGIGPAAAQKLVSEGIMSIEDLRKNQEKLNKQQVIGLKHFEDFEERIPREEMLQ 125
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
++ K E+V + GS+RRG ++ GD+D+++ HP
Sbjct: 126 LQEFSLKQIEKVDSDYAAEVCGSFRRGASNSGDIDILLTHP 166
>gi|311275846|ref|XP_003134936.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sus scrofa]
Length = 491
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 152/323 (47%), Gaps = 16/323 (4%)
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRV---LSQIQGNGNTSSDG 135
ARF G I +L + R+G L R+ L +G + D ++ + G ++ +
Sbjct: 21 ARFPGVAI---YLAEP-RMGRSRRAFLTRLALS-KGFRVLDAYSPEVTHVVMEGTSAEEA 75
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSH 195
S + S H + DV S A P+ E + L A + S
Sbjct: 76 ISWQEHRTPSLPPGCSH---PALLDVSWFTESMAAGQPVPVER-RHRLEVAVPREELPSP 131
Query: 196 HITDPSLLYNPPDL---NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES 252
P P L N +++E L G R S+ +A V++ LP + +
Sbjct: 132 VWMLPYACQRPTPLTHHNASLSEALETLAEAADFDGSKGRHVSFCRAASVLKALPSPVTA 191
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
Q++GLP G+ + IQE++ G ++E E+ +T+ LF +++G+G TA + Y
Sbjct: 192 LSQLQGLPHFGEHSRRVIQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADQWY 251
Query: 313 EKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G RTLDDL+ + LT Q+ GL+++ D+ I R EVE ++++++ A +VLP +
Sbjct: 252 QEGLRTLDDLREQPQRLTKQQKAGLQHYQDLSALILRSEVEALQQVVEAAVGQVLPGATV 311
Query: 372 LCGGSYRRGKASCGDLDVVIMHP 394
G +RRGK D+D +I HP
Sbjct: 312 TLAGGFRRGKLQGHDVDFLITHP 334
>gi|336379068|gb|EGO20224.1| hypothetical protein SERLADRAFT_452929 [Serpula lacrymans var.
lacrymans S7.9]
Length = 517
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 108/191 (56%), Gaps = 7/191 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 182 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 241
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TG L ++E +E+ E + ++F ++G+G A Y G RTLDD+K
Sbjct: 242 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGRQIALMWYANGCRTLDDIKARK 300
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRGKA
Sbjct: 301 GGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRGKAD 360
Query: 384 CGDLDVVIMHP 394
CGD+D+++ P
Sbjct: 361 CGDIDILLTRP 371
>gi|170098384|ref|XP_001880411.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644849|gb|EDR09098.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 527
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 31/204 (15%)
Query: 223 IYRAL---GEDRRSFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTT 276
+YRA G + + Y +AI VI+ P I + + LP +G+ M I+E +TT
Sbjct: 179 LYRARELEGLEVNALGYERAIAVIKSYPNLIAHENFETDIVHLPFLGEKMLFKIREYLTT 238
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK------------- 323
G++ + E ++ +++S F V+G+GPATA+KLY+ G RT+DD+K
Sbjct: 239 GRIQESETTRASQRFQSLSAFSSVYGVGPATARKLYDDGLRTIDDMKRYYDVQEDTEVPQ 298
Query: 324 -NEDSLTH-----------SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+S+T+ S ++GL ++D++T IPR EVEQ+ L+ + ++PE I
Sbjct: 299 LGANSVTNDLIRKDQIPNLSTKVGLALYEDLETPIPRSEVEQIHDLVMQEARYLMPECIS 358
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD 395
G YRRGK C D+D+VI P+
Sbjct: 359 TVVGGYRRGKPYCNDVDIVIGCPN 382
>gi|395850042|ref|XP_003797610.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Otolemur
garnettii]
Length = 491
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 19/252 (7%)
Query: 163 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHI-------TDPSLLYNPPDLNKNIT 214
T A SE P + + LT +L+ P S H + PS ++ P + T
Sbjct: 88 TAAPSECTPATLLDISWLTESLAAGQPVPMESRHRLEVAEPRKAPPSSIWMPAYACQRPT 147
Query: 215 EIFGKLINIYRAL----------GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+ I++ AL G + S ++ +A V+ LP + + Q++GLP G+
Sbjct: 148 PLTHHNISLSEALETLAEAAGFEGREGHSLTFLRAASVLRALPRPVVALTQLRGLPHFGE 207
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+QE++ G ++E E+ +T+ LF +++G+G TA + Y++G RTLDDL+
Sbjct: 208 HSFRVVQELLEHGVCEEVERVRHSERFQTMKLFTQIFGVGVRTADRWYQEGLRTLDDLRE 267
Query: 325 E-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+ LT Q+ G++Y+ D+ T + + + E +++L++ A E+VL + G +RRGK
Sbjct: 268 QPQRLTQQQKAGVQYYQDLSTPVLQPDAEALQQLVEAAVEQVLSGATVTLTGGFRRGKLQ 327
Query: 384 CGDLDVVIMHPD 395
D+D +I HP+
Sbjct: 328 GHDVDFLITHPE 339
>gi|326434337|gb|EGD79907.1| hypothetical protein PTSG_10190 [Salpingoeca sp. ATCC 50818]
Length = 667
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
+ A+ I ++ I + +Q + +P +G I EI++TG L +LE F+ EK R
Sbjct: 369 HTALAFIRRMKEPITTYEQARRIPKVGNETAKKIDEILSTGTLQRLEAFDTPEK-RAQHE 427
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME 355
F +++G+G ATA++ KG RT+ DL N+ LT QR+G++ +++ RIPR EV++M
Sbjct: 428 FSQIYGVGTATAKQFVAKGFRTIQDLLDNQHELTERQRIGVRLHQELQERIPRTEVDRMV 487
Query: 356 RLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
++ + P I GSYRRGK +CGD+DV+I H D++
Sbjct: 488 AHVKHVVLSIEPGCIFEACGSYRRGKKTCGDVDVLISHRDKR 529
>gi|254656359|gb|ACT76274.1| DNA-directed DNA polymerase beta, partial [Sebastiscus marmoratus]
Length = 216
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRL 334
TGKL KLE D+ +I+ V GIGPA A+K +E+G +TL+DLK E+ L H Q++
Sbjct: 1 TGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLEDLKKIENKLNHHQQI 60
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLKYF++ + RIPR E+E+ME L+ +E+ E I SYRRG AS GD+D+++ HP
Sbjct: 61 GLKYFEEFEKRIPRAEMEKMETLILAELKEISTEYIGTICRSYRRGAASSGDIDILLTHP 120
Query: 395 D 395
D
Sbjct: 121 D 121
>gi|226423875|ref|NP_059097.2| DNA-directed DNA/RNA polymerase mu [Mus musculus]
gi|408360062|sp|Q9JIW4.2|DPOLM_MOUSE RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|148708614|gb|EDL40561.1| polymerase (DNA directed), mu, isoform CRA_b [Mus musculus]
Length = 496
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|33440487|gb|AAH56213.1| Polymerase (DNA directed), mu [Mus musculus]
Length = 496
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|122920611|pdb|2IHM|A Chain A, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
gi|122920612|pdb|2IHM|B Chain B, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
Length = 360
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 203
>gi|6746423|gb|AAF27552.1|AF176098_1 DNA polymerase mu [Mus musculus]
Length = 496
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|6851052|emb|CAB71154.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|326476213|gb|EGE00223.1| DNA polymerase POL4 [Trichophyton tonsurans CBS 112818]
Length = 650
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 103/182 (56%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 390 VI 391
+I
Sbjct: 505 II 506
>gi|148708613|gb|EDL40560.1| polymerase (DNA directed), mu, isoform CRA_a [Mus musculus]
Length = 360
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 203
>gi|326480832|gb|EGE04842.1| DNA polymerase POL4 [Trichophyton equinum CBS 127.97]
Length = 650
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 103/182 (56%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 390 VI 391
+I
Sbjct: 505 II 506
>gi|302414018|ref|XP_003004841.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
gi|261355910|gb|EEY18338.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
Length = 770
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 83/121 (68%)
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 330
+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ L+
Sbjct: 474 EEIVTTDRLRRLEHAERDPADETLQRFVRIYGVGNAQASRWIAQGHRTLDDLRARAVLSA 533
Query: 331 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+QR+G+ ++DD+ TRIPR EVE + +++ A + P V ++ GGSYRRG AS GD+D++
Sbjct: 534 NQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPSVELIVGGSYRRGAASSGDIDLI 593
Query: 391 I 391
+
Sbjct: 594 V 594
>gi|403416241|emb|CCM02941.1| predicted protein [Fibroporia radiculosa]
Length = 659
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 79/301 (26%)
Query: 177 ESLTNTLSTASASP----DFSSHHITDPSLLYNP-PDLNKNITEI--------------- 216
+S T +ST + SP S+ HI P+ L P P + NI ++
Sbjct: 217 DSGTKLVSTLTGSPLSEVKVSTRHIEIPAHLLPPSPPIPTNIAKLNYASRYACQRASPLE 276
Query: 217 -----FGKLINIYR---AL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
K +++ R AL GE+R + SY +AI +++ P KI S QV+ LP IG +
Sbjct: 277 CPNPGLVKELDVLRRSRALEGEERSALSYARAISIVKAYPRKIRSLQQVEKLPFIGAKIG 336
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----- 322
++E V +GK+++ + E+ + +SLF ++GIGP TA+KLY G R+LD+L
Sbjct: 337 GMVEEYVLSGKITEAQSILASERFQALSLFATIYGIGPTTARKLYALGLRSLDNLEVYYG 396
Query: 323 ------------KNEDSLTHSQ---------------------------------RLGLK 337
+ E T Q R+ L+
Sbjct: 397 VERDQGPSEEIIEVEKQTTSEQSYRNDKDKGRRRGVGGWGGEKGEGDEGLGESWVRIALE 456
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+D+ +IPR EVE+M R++ +E+ P + G YRRGK D+D+V HPD
Sbjct: 457 LREDLSIKIPRAEVEEMNRVVMAELDELEPGCVSTIAGGYRRGKPESNDVDIVFTHPDGT 516
Query: 398 R 398
R
Sbjct: 517 R 517
>gi|440792209|gb|ELR13437.1| DNA polymerase beta, putative [Acanthamoeba castellanii str. Neff]
Length = 348
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 196 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ 255
H T L + N+ +T I +L I ++ G+ R+ +Y KA+ + P I S +
Sbjct: 8 HQTSEVTLEKHDNYNQKLTAILAELGQIEKSKGQMHRARAYEKAVRALRNHPTAITSGTE 67
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ L GIGK + I EI+ TGKL KL+ +D K + ++LF ++
Sbjct: 68 AQKLDGIGKKIGLKIDEILATGKLKKLDTLNEDPKTKALNLFQQL--------------- 112
Query: 316 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
+ + TH QR+GLK+F + RIPR E+EQ+E+++++ EV E+I G
Sbjct: 113 ---------KHTFTHHQRIGLKHFHEFNERIPRAEMEQLEKIIKETLSEVDEELIGTTCG 163
Query: 376 SYRRGKASCGDLDVVIMHP 394
SYRRG S GD+DV++ HP
Sbjct: 164 SYRRGAESSGDIDVLLTHP 182
>gi|147899762|ref|NP_001079251.1| DNA nucleotidylexotransferase [Xenopus laevis]
gi|1174629|sp|P42118.1|TDT_XENLA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|494987|gb|AAA18493.1| terminal deoxynucleotidyl transferase [Xenopus laevis]
Length = 507
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 2/186 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 386 DLDVVI 391
D+D++I
Sbjct: 339 DVDILI 344
>gi|125858157|gb|AAI29712.1| Dntt-A protein [Xenopus laevis]
Length = 500
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 2/186 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 152 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 211
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 212 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 271
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 272 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 331
Query: 386 DLDVVI 391
D+D++I
Sbjct: 332 DVDILI 337
>gi|13992551|emb|CAC38040.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRADSVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>gi|361130658|gb|EHL02408.1| putative DNA polymerase lambda [Glarea lozoyensis 74030]
Length = 653
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 103/185 (55%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + F +L Y + + R+ SY K + KI D+ + + GIG S+
Sbjct: 324 NDDCINAFLELAAFYERIRDTFRNMSYRKGATALRSQTRKITDYDEAREIFGIGHSLATK 383
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I E G+L+KLE+ + D + + F +++G+G + A K ++GH+TL+DL LT
Sbjct: 384 IVEFHRRGRLAKLEYTKLDGRDSIVQKFMKIYGVGASQADKWVDQGHKTLEDLVANVPLT 443
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G+ +++D RIPR E+ + ++++A ++ P+V GGSYRRG + GD+D
Sbjct: 444 ENQKIGIAHYEDFNIRIPREEMHALGDIVKQAVAKIDPKVEATMGGSYRRGAKTSGDIDF 503
Query: 390 VIMHP 394
++ P
Sbjct: 504 MLTKP 508
>gi|110645438|gb|AAI18907.1| Unknown (protein for IMAGE:7690143) [Xenopus (Silurana) tropicalis]
Length = 538
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 1/189 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 192 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 251
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 252 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 311
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +PEV + G +RRGK D+D
Sbjct: 312 TAEQKAGLLHYTDLQQSVTREEAGTVEQLVKGALQSFVPEVRVTMTGGFRRGKQEGHDVD 371
Query: 389 VVIMHPDRK 397
+I HPD K
Sbjct: 372 FLITHPDEK 380
>gi|358377469|gb|EHK15153.1| hypothetical protein TRIVIDRAFT_51446 [Trichoderma virens Gv29-8]
Length = 598
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 178/392 (45%), Gaps = 42/392 (10%)
Query: 34 RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL----------EALLQQVSKQHLARFK- 82
RRL++ + + GA +E + K A ++ EAL + + H+A
Sbjct: 55 RRLKLATEPVALEGAEGDEAIGDKRGRSDAAEVPSKRPRLSGSEALRSRADEGHVATLDL 114
Query: 83 --GS-----VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
GS V++ WL DSL + D Y + +G I+ S N T
Sbjct: 115 LGGSGDVVLVLKLAWLLDSLEQNVVLPADDYLLY---QGRKISSH--SAQASNPGTPQPR 169
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS------ 189
+ + S+ D + + ++ + S A + + SE T T S
Sbjct: 170 KEDETTRSASAVNDSPYSKRTTRPGTSS---STASDGRLHSEPPTLHRETTSEHEVPLPP 226
Query: 190 -PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEK 245
PDF +++ PSL+ +PP+ I E+ K I R L D+ +Y +I +
Sbjct: 227 IPDFLHTTYSCQRPSLV-SPPNAT-FIAEL--KAIRTLRLLRGDQVGVRAYSTSIASLAA 282
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305
P ++ +++ LPG G + Q+ G + + D ++ + F ++WG+G
Sbjct: 283 YPHLLQRPQEIERLPGCGPKIAQLYQQWTEDGCTDETRKAKTDTELVVLKTFYDIWGVGD 342
Query: 306 ATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
TA++ ++KG R LDD+ DSL+ Q++G+KY+D+ + +IPR E E + ++
Sbjct: 343 TTARQFFKKGWRDLDDIVEYGWDSLSRVQQIGVKYYDEFQLKIPRDETETIASVILAHAR 402
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P ++ GSYRRGK S GD+DVV+ HPD
Sbjct: 403 RVDPGFQMVIVGSYRRGKPSSGDVDVVLSHPD 434
>gi|336390909|dbj|BAK40153.1| DNA polymerase beta [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 334
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 1/164 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+S Y KA ++ P KI S + + L GIG + I E + TG L KLE D
Sbjct: 35 KSKVYRKAASILANHPTKITSGAEARKLDGIGDKIGKKIDEFIKTGTLQKLEKIRVDSSA 94
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
I+ V GIGPA A+ L + G ++++L KN D L H Q++GLK+F+D + RIPR E
Sbjct: 95 VAINQLTRVSGIGPAAARNLVDDGICSIEELKKNNDKLNHHQKIGLKHFEDFEKRIPRSE 154
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+++ + + + E GSYRRG S GD+DV+I HP
Sbjct: 155 MDKHQEFIIDEISKHDKEFTACICGSYRRGAESSGDIDVLITHP 198
>gi|145476207|ref|XP_001424126.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391189|emb|CAK56728.1| unnamed protein product [Paramecium tetraurelia]
Length = 609
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 113/192 (58%), Gaps = 4/192 (2%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY + R +Y KAI I+ L F I S++ +K +P IG+ +++
Sbjct: 283 NNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGYIKSLTFPIRSSEDLKEMPTIGEKIKNK 342
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I EI+ TG+L K++ + EK I+ VWGIGP TA Y KG +TLDDL KN+ L
Sbjct: 343 IIEIIQTGQLVKVQKLQGQEKNVAITQLSRVWGIGPTTAATFYFKGIKTLDDLRKNQHLL 402
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASCG 385
+Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K +CG
Sbjct: 403 NRNQQVCLQLVEELEQRIPRDEATIIYDIVKREIDDLSGVPGLYKATACGSYRREKETCG 462
Query: 386 DLDVVIMHPDRK 397
D+D++I D K
Sbjct: 463 DMDILITRCDGK 474
>gi|403278452|ref|XP_003930819.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Saimiri
boliviensis boliviensis]
Length = 494
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q++GL++ D+ T + R +V+ +++ +++A + +P + G +RRGK D+D
Sbjct: 273 TQQQKVGLQHHQDLSTPVLRSDVDALQQAVEEAVAQAMPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|336366399|gb|EGN94746.1| hypothetical protein SERLA73DRAFT_96118 [Serpula lacrymans var.
lacrymans S7.3]
Length = 685
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 210 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 340 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 399
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ---KLYEKGHRTLDDLK 323
I EI+ TG L ++E +E+ E + ++F ++G+G + Q Y G RTLDD+K
Sbjct: 400 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGMSCRQIALMWYANGCRTLDDIK 458
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRG
Sbjct: 459 ARKGGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRG 518
Query: 381 KASCGDLDVVIMHP 394
KA CGD+D+++ P
Sbjct: 519 KADCGDIDILLTRP 532
>gi|332865053|ref|XP_001142835.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 4 [Pan
troglodytes]
Length = 494
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|310790620|gb|EFQ26153.1| hypothetical protein GLRG_01297 [Glomerella graminicola M1.001]
Length = 602
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I P+ I +V LPG G + + E G+L + + + D K+ I
Sbjct: 267 AYSTSIATISAYPYVIAIRQEVARLPGCGVKIAELWHEWEKAGRLREADEAQADSKLSVI 326
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
F ++WG+G TA+ Y +G R LDD+ DSL+ Q++G+KY+D+ K +IPR EV
Sbjct: 327 QTFYDIWGVGDTTARDFYSRGWRDLDDVVEHGWDSLSRVQQIGVKYYDEFKLKIPRTEVR 386
Query: 353 QM-ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + +L A + L +++ GG YRRGK GD+DVVI HPD
Sbjct: 387 DIADTILAHARKINLGFQLVIVGG-YRRGKQGSGDVDVVISHPD 429
>gi|397467153|ref|XP_003805291.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pan
paniscus]
gi|410253858|gb|JAA14896.1| polymerase (DNA directed), mu [Pan troglodytes]
gi|410301512|gb|JAA29356.1| polymerase (DNA directed), mu [Pan troglodytes]
Length = 494
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|393243723|gb|EJD51237.1| Nucleotidyltransferase [Auricularia delicata TFB-10046 SS5]
Length = 324
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 4/163 (2%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY KAI + + P +I+SA++ + L G+GK D I EI+ TG L +L+ E++
Sbjct: 15 RVISYRKAISALRRHPTRIKSAEEAERLHGVGKKTADKIMEILGTGNLQRLK-TEREHGH 73
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPR 348
++LF ++ +G A + Y KG RTLDD++ L +Q +GL+Y+DD+ R+PR
Sbjct: 74 DVVALFRGIYSVGSKIAWEWYAKGLRTLDDVRERKGGIRLNSAQEIGLRYYDDLNERMPR 133
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
E ++ ++++ ++ P + + GSYRR K +CGD+D++I
Sbjct: 134 AEAGEIFGMIKQRVLDIDPNLTLEIMGSYRRRKETCGDIDILI 176
>gi|156048408|ref|XP_001590171.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980]
gi|154693332|gb|EDN93070.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 940
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 35/325 (10%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLY------RIKLDPE--GENIADRVLSQIQGNGNTSSDGE 136
V+ W DS+R G+ + D Y RI P+ +I R + I+ N +
Sbjct: 450 VLNKDWYFDSVREGKLLPMDNYLIYEGRRIMEPPKILSSDILTRAAADIKSYPNPKYNHY 509
Query: 137 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
H++ K T Q S+ D + + P E L S +P
Sbjct: 510 YRHQQSSKPLTRPTLLTQTTSEHD-------DPEHYPPLPEYLITHYSCERPTP------ 556
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQ 255
+T P+ + +T++ + I + R L D+ +Y AI I P+ + S ++
Sbjct: 557 LTSPN--------DDFLTQL--QSIKLKRTLDGDQIGVRAYSTAIASIAAYPYVLTSPNE 606
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK- 314
V LPG + + + + TG + ++ F+ + ++ + LF +WG G ATA+ Y+K
Sbjct: 607 VIRLPGCDQKIANLFLQYQNTGTIDEVVEFQNNPRMEVLRLFHNIWGAGDATARDFYDKR 666
Query: 315 GHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
G R LDD+ D LT Q++G+KY+D+ IPR EVE++ ++ ++ ++
Sbjct: 667 GWRDLDDVIEYGWDKLTRVQQIGVKYYDEFLLPIPRAEVEEISFIVLTEARKIDEGYQMV 726
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRK 397
G YRRGK +CGD+D+++ HPD K
Sbjct: 727 IVGGYRRGKENCGDVDLILTHPDEK 751
>gi|145524878|ref|XP_001448261.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415805|emb|CAK80864.1| unnamed protein product [Paramecium tetraurelia]
Length = 608
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 4/193 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N I E KL+ IY + R +Y KAI I+ L F I S++ VK +P IG+ ++
Sbjct: 289 FNNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGFIKSLAFPIRSSEDVKEMPTIGEKIKK 348
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I EI+ TG L K++ E +K I+ VWGIGP TA Y KG +TL+DL+ N+
Sbjct: 349 KIVEIIQTGSLLKVQKLEGQDKNIAITQLTRVWGIGPTTAATFYFKGIKTLNDLRQNQHM 408
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASC 384
L +Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K SC
Sbjct: 409 LNKNQQVCLQLVEELEQRIPRDEATIIYEIVKRELDDLSGVPGLYKATACGSYRREKESC 468
Query: 385 GDLDVVIMHPDRK 397
GD+D++I D K
Sbjct: 469 GDMDILITRCDGK 481
>gi|453089221|gb|EMF17261.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 619
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + EI ++ Y G++ R +Y KAI + + KI + + LP IG + +
Sbjct: 293 NTDTIEILQQMAEHYGQTGDEWRVRAYRKAIATLRRHTVKINTKAEAGALPNIGPRLAEK 352
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I+EIV T +L +L+H + + + F V+G G A + G+RTL +L + SL
Sbjct: 353 IEEIVFTRRLRRLDHARAEPHDQILQTFLGVYGAGIKQATEWVNAGYRTLGELLEKAPSL 412
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q +G+ +++D TRI R EVE+ ++ A + P ++ GGSYRRG GD+D
Sbjct: 413 TPNQMIGIAHYEDFATRISRSEVEKHGSFVRTALHRLDPRCEVIIGGSYRRGAKDSGDID 472
Query: 389 VVIMHPD 395
+I PD
Sbjct: 473 CIITRPD 479
>gi|164451472|ref|NP_001030363.2| DNA-directed DNA/RNA polymerase mu [Bos taurus]
Length = 488
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHPD 395
+I HP
Sbjct: 329 FLITHPQ 335
>gi|296488366|tpg|DAA30479.1| TPA: DNA-directed DNA polymerase mu [Bos taurus]
Length = 473
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHPD 395
+I HP
Sbjct: 329 FLITHPQ 335
>gi|426356073|ref|XP_004045416.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Gorilla
gorilla gorilla]
Length = 494
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|291223873|ref|XP_002731933.1| PREDICTED: terminal deoxynucleotidyl transferase-like [Saccoglossus
kowalevskii]
Length = 539
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ ++ +A ++ LP + S V L IGK +D I+EI+ G +++E + E
Sbjct: 181 RALAFRRASASLKSLPHTVTSMRDVANLKDIGKHCKDVIREILEKGYSTEIEDIKSSEWF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRH 349
+TI LF ++G GPATA+K Y G+RTL+D+K + LT QR G++++DD++T + R
Sbjct: 241 KTIQLFVGIYGCGPATARKWYNMGYRTLEDIKKSTTIHLTADQRNGIRFYDDLQTPVIRR 300
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E E + + + +E+ + ++ G + RGK S D+D+++ HPD
Sbjct: 301 EAEAIRNFIIEEIKEISNDFTVVITGGFIRGKDSGHDVDLLMSHPD 346
>gi|297680548|ref|XP_002818050.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pongo
abelii]
Length = 501
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 107/186 (57%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A +VLP + G +RRG+ + D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQVLPGATVTLTGGFRRGEVAGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLISHP 338
>gi|149704611|ref|XP_001495709.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Equus caballus]
Length = 489
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+ +A V++ LP + + Q++GLP G+
Sbjct: 149 NTSLSEALETLAEAAGFEGSEGRFLSFCRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 209 VQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRGQPQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL+++ D+ + R ++E ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHYQDLSALVQRPDLEALQQVVEAAVGQALPGATVTLTGGFRRGKLQGHDVD 328
Query: 389 VVIMHPDRKR 398
+I HP+ R
Sbjct: 329 FLITHPEEGR 338
>gi|296815906|ref|XP_002848290.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
gi|238841315|gb|EEQ30977.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
Length = 659
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 102/182 (56%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ +++N Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 334 NSRTIEVLQQMLNYYERTADQWRCLAYRRAISALRREKDKVVTKSQALKIRGIGERLAVK 393
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + +S F +++G+G A K +G+++LD+LK LT
Sbjct: 394 IEEIVWTNRLRRLEQANMEPNDALLSQFLKIYGVGYQQASKWIAQGYKSLDELKGGAHLT 453
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++ V ++ GGSYRRG A GD+D+
Sbjct: 454 TNQKIGIERYDDFQKRIPREEVEAHGAIVRETVLAVDSSYTVIIGGSYRRGAADSGDIDL 513
Query: 390 VI 391
++
Sbjct: 514 IL 515
>gi|348560142|ref|XP_003465873.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Cavia porcellus]
Length = 500
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 1/190 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+ +A V++ LP+ + Q++GLP G+
Sbjct: 161 NSSLSEALETLAEAAGFEGSEGRLLSFRRAASVLKALPWPVTELSQLQGLPHFGEHSTSV 220
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 328
IQE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLD+L+ + L
Sbjct: 221 IQELLERGVCEEVERVRCSERYRTMKLFTQIFGVGVKTANQWYQEGLRTLDELQEQPRRL 280
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T R + E +++L++ + LP + G +RRGK D+D
Sbjct: 281 TRQQQAGLQHHLDLCTPXGRPDAEALQQLVEATVRQALPGATVTLTGGFRRGKPQGHDVD 340
Query: 389 VVIMHPDRKR 398
+I HP+ R
Sbjct: 341 FLITHPEEGR 350
>gi|46110028|ref|XP_382072.1| hypothetical protein FG01896.1 [Gibberella zeae PH-1]
Length = 594
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 6/197 (3%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
NPP NK ++ ++ I R LGED +Y +I + P+ ++++ +V LPG G
Sbjct: 239 NPP--NKAFVKLLTEIRTI-RQLGEDDVGVRAYSTSIASVAAYPYPLKNSQEVARLPGCG 295
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL- 322
+ + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG R L DL
Sbjct: 296 DRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWRDLVDLV 355
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +RRGK
Sbjct: 356 EHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHRRGK 415
Query: 382 ASCGDLDVVIMHPDRKR 398
GD+DVV+ H D +
Sbjct: 416 QKSGDVDVVLSHRDESK 432
>gi|58477450|gb|AAH90111.1| poll.2 protein [Xenopus (Silurana) tropicalis]
Length = 448
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 188 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 247
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 248 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 307
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 308 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 367
Query: 389 VVIMHPD 395
+I HPD
Sbjct: 368 FLITHPD 374
>gi|7019493|ref|NP_037416.1| DNA-directed DNA/RNA polymerase mu [Homo sapiens]
gi|17366980|sp|Q9NP87.1|DPOLM_HUMAN RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|6715109|gb|AAF26284.1|AF176097_1 DNA polymerase mu [Homo sapiens]
gi|6822168|emb|CAB65075.2| DNA polymerase mu [Homo sapiens]
gi|58102203|gb|AAW65376.1| polymerase (DNA directed), mu [Homo sapiens]
gi|119581526|gb|EAW61122.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
gi|119581527|gb|EAW61123.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
Length = 494
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|342886891|gb|EGU86588.1| hypothetical protein FOXB_02917 [Fusarium oxysporum Fo5176]
Length = 584
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 27/323 (8%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVL------SQIQGNGNTSSDGESS 138
V++ WL DS E + D Y I +RVL + + G+TS
Sbjct: 108 VVKLSWLLDSWEKEELLPVDHYLIFQ-------CNRVLPRETTPAPVLPKGSTSPASSIL 160
Query: 139 HRKKIKS---STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--S 193
R ++ ST Q + + DV T AP+ + ++ + T P+F +
Sbjct: 161 ERALLEQKAQSTSTSPSNQHKRRHDVSTTISQNAPS--LLHQTTSEHDITLPVMPEFLRT 218
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES 252
++ P+ + NPP N+ I ++ I R L ED +Y +I I P+ +++
Sbjct: 219 TYSCQRPTYM-NPP--NEAFVNILTEIRTI-RQLREDEVGVRAYSTSIASIAAYPYALKN 274
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
A +V LPG G + + TG+ ++ D K+ + LF +WG+G TA+ Y
Sbjct: 275 AQEVARLPGCGDRIAELWHYWKETGESVEVREANADPKITVLKLFYNIWGVGAVTARDFY 334
Query: 313 EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
KG R LDDL ++L+ SQ+LG+KY+++ IPR EV + + + + P
Sbjct: 335 RKGWRDLDDLVEFGWNTLSRSQQLGVKYYNEFLLGIPRDEVATIAAAILEHARLIDPGFE 394
Query: 371 ILCGGSYRRGKASCGDLDVVIMH 393
++ G YRRGK GD DVV+ H
Sbjct: 395 MVIVGGYRRGKQQSGDADVVLSH 417
>gi|408395235|gb|EKJ74418.1| hypothetical protein FPSE_05383 [Fusarium pseudograminearum CS3096]
Length = 594
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 205 NPPDLNKNITEIFGKL---INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP 260
NPP+ E F KL I R LG+D +Y +I + P+ ++++ +V LP
Sbjct: 239 NPPN------EAFVKLLTEIRTIRQLGKDDVGVRAYSTSIASVAAYPYPLKNSQEVARLP 292
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
G G + + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG + LD
Sbjct: 293 GCGDRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWQDLD 352
Query: 321 DL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL ++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +R
Sbjct: 353 DLVEHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHR 412
Query: 379 RGKASCGDLDVVIMHPDRKR 398
RGK GD+DVV+ H D +
Sbjct: 413 RGKQESGDVDVVLSHRDESK 432
>gi|284009756|ref|NP_001164987.1| polymerase (DNA directed), mu [Xenopus (Silurana) tropicalis]
gi|169642654|gb|AAI60552.1| Unknown (protein for MGC:135998) [Xenopus (Silurana) tropicalis]
Length = 406
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 60 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 119
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 120 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 179
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 180 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 239
Query: 389 VVIMHPD 395
+I HPD
Sbjct: 240 FLITHPD 246
>gi|448825563|ref|YP_007418494.1| putative DNA polymerase family X protein [Megavirus lba]
gi|444236748|gb|AGD92518.1| putative DNA polymerase family X protein [Megavirus lba]
Length = 357
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTI 294
+ + +I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 44 RILGIIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSI 103
Query: 295 SLFGEVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPR 348
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR
Sbjct: 104 QELERVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPR 163
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
E++Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K
Sbjct: 164 KEIDQVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMK 212
>gi|363539795|ref|YP_004894637.1| mg586 gene product [Megavirus chiliensis]
gi|350610960|gb|AEQ32404.1| putative DNA polymerase family X protein [Megavirus chiliensis]
gi|371943935|gb|AEX61763.1| putative DNA polymerase family X [Megavirus courdo7]
gi|425701498|gb|AFX92660.1| putative DNA polymerase family X protein [Megavirus courdo11]
Length = 357
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTI 294
+ + +I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 44 RILGIIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSI 103
Query: 295 SLFGEVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPR 348
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR
Sbjct: 104 QELERVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPR 163
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
E++Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K
Sbjct: 164 KEIDQVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMK 212
>gi|402863618|ref|XP_003896104.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Papio
anubis]
Length = 494
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>gi|452847333|gb|EME49265.1| hypothetical protein DOTSEDRAFT_76625 [Dothistroma septosporum
NZE10]
Length = 827
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 102/185 (55%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ + Y G++ R +Y KA+ + P ++ S ++ LP +G+ +
Sbjct: 389 NTATITILQQMADYYGQTGDEWRIRAYRKAMSSLRNHPTRVTSKEEALALPNVGERLATK 448
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + + + F V+G G A + G+ TLD++ + SLT
Sbjct: 449 IEEIAFTNRLRRLDNAKAEPNDQVLQTFMGVYGAGLVQASRWVSAGYTTLDEVLQKASLT 508
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++ D +RIPR EV + +++ A +++ ++ GGSYRRG GD+D
Sbjct: 509 QNQRIGIEHYADFNSRIPRAEVARHGSVVRGALKKIDSAFEVIVGGSYRRGSKDSGDIDC 568
Query: 390 VIMHP 394
+I P
Sbjct: 569 IITRP 573
>gi|395323714|gb|EJF56174.1| Nucleotidyltransferase [Dichomitus squalens LYAD-421 SS1]
Length = 573
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 35/203 (17%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GEDR + SY +A VI+ P KI S QV LP IG + I++ + TG + + E +
Sbjct: 224 GEDRSALSYERAASVIKAYPHKIRSLAQVVKLPFIGTKIGGLIEQYLNTGTILEAETIKG 283
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK------------------------ 323
E+ +T+SLF ++GIGP+TA++LY RTL+DL+
Sbjct: 284 SERFQTLSLFASIYGIGPSTARRLYHLNLRTLEDLEIYYGVERDDVGRQGQIVEVEEKPQ 343
Query: 324 ----------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+D L S R+ L +D+ RIPR EVE+M R++ + P +
Sbjct: 344 HPRWMRGQRAADDGLGDSWIRVALGLREDLAKRIPRAEVEEMGRVVITELNNLEPGCVST 403
Query: 373 CGGSYRRGKASCGDLDVVIMHPD 395
G YRRGK D+D+V HPD
Sbjct: 404 IVGGYRRGKRESNDVDIVFTHPD 426
>gi|392560796|gb|EIW53978.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 626
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 47/223 (21%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + TG
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDTGH 295
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK--------------- 323
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+LDDL+
Sbjct: 296 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLDDLEIYYGVEPSSSTASPS 355
Query: 324 ------------------------------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVE 352
+E+ L S R+ L +D+ IPR EVE
Sbjct: 356 SQPSQIVEIEEKEKTRQAGWKSRDKDRGKGDEEGLGDSWIRVALGLREDLSKMIPRDEVE 415
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ R++ + + + P + G YRRGK D+D+V HPD
Sbjct: 416 EIGRVVMRELDALEPGCVSTIVGGYRRGKPESNDVDIVFTHPD 458
>gi|342320802|gb|EGU12741.1| DNA polymerase lambda [Rhodotorula glutinis ATCC 204091]
Length = 1020
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY +A + P K+ DQ+ L GIG M + I EI+ TG +L F+ E+
Sbjct: 713 RQRSYKQAANKLRSCPTKVTRFDQLVKLRGIGDKMANKIIEILRTGTHRRLTTFQT-ERE 771
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL--GLKYFDDIKTRIPRH 349
+T+ LF ++G+G A A LY+KG R+++ ++ + + ++ L GLKY++D+ RIPR
Sbjct: 772 KTVKLFCGIYGVGQAKAADLYDKGARSVEMIRRDPARFGAELLHVGLKYYEDLLERIPRD 831
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
EV ++ ++ ++ P++ + C GSYRRG +CGD+D++I
Sbjct: 832 EVTELYGHAKRIAYKIDPKLQVWCMGSYRRGAETCGDIDLII 873
>gi|431909928|gb|ELK13024.1| DNA polymerase mu [Pteropus alecto]
Length = 515
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 111/207 (53%), Gaps = 11/207 (5%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRSFSYYKAIPVIEKLPFK 249
PSL++ PP + T + ++ AL G + R ++ +A +++ P
Sbjct: 128 PSLVWMPPYACQRPTPLTHHNTSLSEALEMLAEAAGFDGSEGRVLAFSRAASMLKAFPGP 187
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ + Q++GLP G+ +QE++ G+ ++E + R++ LF ++G+G TA
Sbjct: 188 VTALSQLQGLPHFGEHSCRVVQELLDRGECVEVERVRLSARYRSMKLFTGIFGVGVRTAD 247
Query: 310 KLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+ Y +G RTLDD++ + LT Q+ GL++ D+ T + R + E ++++++ A E+ LP
Sbjct: 248 RWYREGLRTLDDVRGQVQRLTQQQKAGLRHHADLSTPVQRPDAEALQQVVEAAVEQALPG 307
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPD 395
+ G +RRGK D+D +I HP+
Sbjct: 308 ATVTLAGGFRRGKLQGHDVDFLITHPE 334
>gi|407926589|gb|EKG19556.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 749
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y ++ RS +Y KA+ ++K +I + DQ LP +G +
Sbjct: 415 NARTIEILTEMGNYYEQTKDEWRSRAYRKAVSTLQKQERRIITKDQALLLPFVGDRLAVK 474
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I+EIV T +L +LE+ + + F +++G+G + A+K G RTL DL+ + L
Sbjct: 475 IEEIVWTNRLRRLENARMEPGDEALQNFLKIYGVGLSKARKWVMAGLRTLQDLEEYKIPL 534
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q++G+ +++D TRIPR EV + +++ A + + P+ GSYRRG + GD+D
Sbjct: 535 TPAQQVGMAHYEDFNTRIPREEVSKHADVVRDALQAIDPKFTATVSGSYRRGAQTSGDID 594
Query: 389 VVIMHP 394
++I P
Sbjct: 595 ILISCP 600
>gi|389623977|ref|XP_003709642.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|351649171|gb|EHA57030.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|440474906|gb|ELQ43621.1| DNA polymerase beta [Magnaporthe oryzae Y34]
gi|440487441|gb|ELQ67230.1| DNA polymerase beta [Magnaporthe oryzae P131]
Length = 582
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 41/328 (12%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR----VLSQIQGN----------GN 130
V + W DS+ GE + D Y + +G N+ ++QI + G
Sbjct: 109 VAKLAWFTDSIAKGEVLPIDDYVVY---QGINLGREEPFPPINQIAASFKEGAAAKQAGT 165
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP 190
S+ S +++ V H ES T+ A N P L + S +P
Sbjct: 166 GSAHSMPSFKRRRGQPQSYVPHLMPES-----TSEHDAAENLPPIPSFLHSVYSCQRPTP 220
Query: 191 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFK 249
NPP N E K I R L D +Y AI + P+
Sbjct: 221 A-------------NPP--NSAFIEQL-KEIRTTRLLNGDSIGVRAYSTAIASLAAYPYG 264
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ + +V+ LPG + + QE TGK+ ++E +D +++ + F WG+G TA+
Sbjct: 265 LTTHIEVQRLPGCNEKIAFLYQEWKHTGKIKEVEEATQDPRLKILREFHATWGVGDTTAR 324
Query: 310 KLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+ Y KG R LDD+ +SLT Q++G+KY+D+++ +I R EVE++ ++ + ++
Sbjct: 325 EWYNKGWRDLDDVVEYGWESLTRVQQIGVKYYDELQLKISREEVEKIANIILQHANKIRS 384
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ G YRRGK GD+D+++ HPD
Sbjct: 385 GFQMVIVGGYRRGKDESGDVDLILSHPD 412
>gi|157833739|pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 115
>gi|15825881|pdb|1JN3|A Chain A, Fidelity Properties And Structure Of M282l Mutator Mutant
Of Dna Polymerase: Subtle Structural Changes Influence
The Mechanism Of Nucleotide Discrimination
Length = 251
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 115
>gi|74136509|ref|NP_001028151.1| DNA nucleotidylexotransferase [Monodelphis domestica]
gi|3024713|sp|O02789.1|TDT_MONDO RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|2149634|gb|AAC17587.1| terminal deoxynucleotidyltransferase [Monodelphis domestica]
Length = 518
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 388 DVVIMHP 394
D +I P
Sbjct: 347 DFLITSP 353
>gi|392560791|gb|EIW53973.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 597
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 38/214 (17%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + G
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDNGH 295
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ------ 332
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL+ + SQ
Sbjct: 296 ISEAQTIQSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVERSQVQQSQI 355
Query: 333 -------------------------------RLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
R+ L +D+ IPR EVE++ R++ +
Sbjct: 356 IEVEEKPRQAGWKGRDKKDKGDEEGLGDSWIRVALGLREDLSKMIPRDEVEEIGRVVMRE 415
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + P + G YRRGK D+D+V HPD
Sbjct: 416 LDALEPGCVSTIVGGYRRGKPKSNDVDIVFTHPD 449
>gi|451927347|gb|AGF85225.1| polymerase family X [Moumouvirus goulette]
Length = 357
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 104/161 (64%), Gaps = 9/161 (5%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGPSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
EV GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ +K IPR E+
Sbjct: 108 EVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGIVKGNIPRKEIV 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
Q+E+ L +E+ ++ ++ GSYRRGKA+ GD+DV++ H
Sbjct: 168 QIEKYLVSQAKEINDDLELIICGSYRRGKATSGDIDVLMYH 208
>gi|116206616|ref|XP_001229117.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
gi|88183198|gb|EAQ90666.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
Length = 596
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ E K I R L DR Y P E+L +V LPG G
Sbjct: 238 HPP--NQGFIEELTK-IKTARTLTGDRIGVRAYSKSPTAERL-------TEVARLPGCGS 287
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ QE TG++ + E D K+ + LF +WG+ TA+ Y +G R LDD+
Sbjct: 288 KIALLFQEFRETGQIREAREDESDPKLAVLKLFYNIWGVAETTARDFYNRGWRDLDDIVE 347
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
++LT Q++G+KY+++++ IPR EVE + ++ ++ P ++ G YRRGK
Sbjct: 348 YGWETLTRVQQIGVKYYEELQLPIPRAEVESIAGVILAHANQIRPGFEMVIVGGYRRGKT 407
Query: 383 SCGDLDVVIMHPD 395
+ GD+DVV+ H D
Sbjct: 408 ASGDVDVVLSHRD 420
>gi|432092624|gb|ELK25159.1| DNA-directed DNA/RNA polymerase mu [Myotis davidii]
Length = 459
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G + R S+ +A V++ LP + + Q++GLP G+ IQE++ G ++E ++
Sbjct: 135 GSEGRLLSFSRAASVLKALPCPVTALSQLQGLPHFGEHSCRVIQELLEHGVCEEVERVQR 194
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 346
E+ +++ LF ++G+G TA + Y +G RTLDD++ + LT Q+ GL+++ D+ + +
Sbjct: 195 SERYQSMKLFTRIFGVGVRTADQWYREGLRTLDDVRKQVQRLTQQQKAGLEHYQDLSSPV 254
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R + E + ++++ A LP + G +RRGK D+D +I HP+
Sbjct: 255 QRPDAEALRQVVEAAVGWALPGATVTLAGGFRRGKLQGHDVDFLITHPE 303
>gi|255079262|ref|XP_002503211.1| predicted protein [Micromonas sp. RCC299]
gi|226518477|gb|ACO64469.1| predicted protein [Micromonas sp. RCC299]
Length = 742
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 15/202 (7%)
Query: 206 PPDLNKNITEIFGKLINIYRAL--GEDRRSFSYYKAIP-VIEKLPFKIESADQVKGLPGI 262
P +LN +IT +L IY + G + ++K + +E+L F + +Q+ P
Sbjct: 371 PVNLNPHITRPLEELAAIYEDVLGGTNAYKARHHKQVAGAVERLDFVVTDVEQLCDPPVT 430
Query: 263 ------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKG 315
+++D I+E++ TGKL+KLE ++ V + VWGIG TA+KL+ E G
Sbjct: 431 PAFAQKTSTVRDKIRELLATGKLAKLEELKRKPDVEAVLELSGVWGIGTETARKLHREDG 490
Query: 316 HRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
T+ L+ L+ +Q +GL+++++ K RIPR EVE + ++ A V P
Sbjct: 491 VSTVAQLRALAARQPGKLSANQHVGLRFYEEFKERIPRDEVEALAGHVEDAVAAVCPGCS 550
Query: 371 ILCGGSYRRGKASCGDLDVVIM 392
+ GSYRRGK SCGD+DV++
Sbjct: 551 VTVAGSYRRGKTSCGDVDVLLC 572
>gi|444708211|gb|ELW49303.1| DNA nucleotidylexotransferase [Tupaia chinensis]
Length = 536
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + S + +A V+ LPF I S +GLP +G ++
Sbjct: 162 NCNRVFTDAFETLAENYEFRENEDSSVIFLRAASVLRSLPFTITSMRDTEGLPCLGDKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 222 CVIEEIIEDGESSEVNAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSRVRSDKS 281
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 282 LHLTRMQQAGFLYYEDLASCVTRAEAEAVGVLVKEAVGAFLPDALVTITGGFRRGKKTGH 341
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 342 DVDFLITSP 350
>gi|453085134|gb|EMF13177.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 730
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 9/213 (4%)
Query: 190 PDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
P++ H+ P D N ++ G+ I R L D +Y +I +
Sbjct: 335 PEWVKAHVKYACQRSTPKDNPNDVFIDLLGR-IKFARLLTNDEIGVRAYATSIAALRSHS 393
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
++I + ++ +PG + + E GK+ +E EKDE ++ + LF +WG+G T
Sbjct: 394 YEISNPQEILRIPGCDAKIANLWVEWKNNGKIKAVEEAEKDEDLKILKLFWNIWGVGVTT 453
Query: 308 AQKL-YEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
A++ Y++G R LDD+ +L Q++G+KY+D+ IPR EVE + +++ + +
Sbjct: 454 AREFYYDRGWRELDDIVEYGWSTLQRVQQIGVKYYDEFLDPIPRAEVESICKVVHQHAVK 513
Query: 365 VLPEVI--ILCGGSYRRGKASCGDLDVVIMHPD 395
V + I ++ GG YRRGK +CGD+D+VI HPD
Sbjct: 514 VRDDGIQSMIVGG-YRRGKEACGDVDIVISHPD 545
>gi|60223047|ref|NP_001012479.1| DNA nucleotidylexotransferase [Rattus norvegicus]
gi|59809178|gb|AAH89904.1| Deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 510
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 388 DVVIMHPD 395
D +I P+
Sbjct: 345 DFLITSPE 352
>gi|149040157|gb|EDL94195.1| deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 500
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 388 DVVIMHPD 395
D +I P+
Sbjct: 345 DFLITSPE 352
>gi|328873769|gb|EGG22135.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
Length = 1211
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+I ++ + G + +Y KAI I+ P KI S + K L G+G +
Sbjct: 102 NKLLTDILLQVGIFEKNKGATHKYNAYRKAIQSIQSYPKKITSGQESKKLDGVGLKISQK 161
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
+QEI+ TGKL KLE + +E ++ + I T + E+ +T+ DL+ +L
Sbjct: 162 VQEILDTGKLKKLEKLQSNE------IYMAINEICKLTKNLVMEQNIKTIADLRKISHTL 215
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
H Q++GLKYFDDI+ R+PR E+E++E +++K + + +I GSYRRG + GD+D
Sbjct: 216 NHHQQIGLKYFDDIEQRVPREEIEEIEAIVKKCLKTIDKSIIADTCGSYRRGTPNSGDID 275
Query: 389 VVIMHPD 395
+++ HP+
Sbjct: 276 ILLSHPN 282
>gi|320170152|gb|EFW47051.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++ L Y+ G+D R ++ +A+ + PF+I S D+ LP I +
Sbjct: 297 ELNASVAAPLSALAEFYKTSGDDIRYLAFRRAVASLRACPFRIRSVDEALRLPFISGKIA 356
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I E + G + + + RT+ LF + G+G A YE G+RTL DL +
Sbjct: 357 LLIGEQLRHGHVKRHLELCNGKLGRTLQLFTRILGVGSKLALMWYESGYRTLQDLSSRPP 416
Query: 328 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
HS LGL+ ++DI +IPR EVE+ L ++ V P +++ G +RRGK++
Sbjct: 417 RGWRALHS--LGLELYNDITQQIPRAEVEEFGELFRQHAARVDPNLVMTFSGGFRRGKST 474
Query: 384 CGDLDVVIMH 393
D+D++I H
Sbjct: 475 VSDVDILITH 484
>gi|452984299|gb|EME84056.1| hypothetical protein MYCFIDRAFT_162909 [Pseudocercospora fijiensis
CIRAD86]
Length = 516
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I K +A ++ LPG + + E TG + +E DE ++ +
Sbjct: 167 AYSTSIAAIAAYTHKFSTAKEILALPGCDSKIANLWVEWKNTGTIKAVEDARNDEDLKVL 226
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF +WG+G ATA+ Y ++G R LDD+ +L Q++G+KY+D+ + IPR EV
Sbjct: 227 RLFYNIWGVGVATARDFYFDRGWRELDDIVEYGWSTLVRVQQIGVKYYDEFQDLIPRAEV 286
Query: 352 EQMERLLQKAGEEVLPEVI--ILCGGSYRRGKASCGDLDVVIMHPD 395
EQ+ +++K +V + I ++ GG YRRGK + GD+D+V+ HP+
Sbjct: 287 EQICEVIRKHAVKVRDDGIQTVIVGG-YRRGKEASGDVDIVVTHPN 331
>gi|328868842|gb|EGG17220.1| phosphatase tensin type domain-containing protein [Dictyostelium
fasciculatum]
Length = 1026
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGE-DR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
+ N++IT + KL+ +ALG+ DR R ++Y +AI +++ L FK+ S+ + + GIG
Sbjct: 701 NYNESITSVLEKLLE--KALGDGDRWREYAYKRAIGILKGLTFKLSSSKDLGDIRGIGPK 758
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+++ I EI+ TG L ++E D + ++ G GP T + G ++ L+
Sbjct: 759 IREKIDEIIETGTLRRVESSLSDTTNQISQALLKIHGAGPNTVKNWMAAGVVSIQQLRQH 818
Query: 326 D-----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
LT Q +GLKY++D TRIPR EV + +++ +E+ P +I+ GS+RR
Sbjct: 819 ILIDPLFLTSQQHIGLKYYEDFLTRIPRLEVINIVSIIENVVKELDPNIIMEVCGSFRRM 878
Query: 381 KASCGDLDVVIMH 393
K CGD+D++ H
Sbjct: 879 KKDCGDIDILFTH 891
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 9 PTPALDSNGIFAGMRVFLV-EKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE 67
P P D I +F + +KG+ + I + K++ G T+ + ++ TH+L D
Sbjct: 411 PPPVPDRKIIMFKNNIFYINKKGIGRLQQNIIQTKIISNGGTICQHITTLTTHILVQDST 470
Query: 68 ALLQQVSKQHLARFKG-----SVIRY--QWLEDSLRLGEKVSED 104
+++ ++ + FK S++ Y WL S++ GEK+ +D
Sbjct: 471 SIIDPITLS--SDFKDLILSKSIVGYTINWLTLSIQKGEKIIDD 512
>gi|367024231|ref|XP_003661400.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
gi|347008668|gb|AEO56155.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
Length = 636
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 143/327 (43%), Gaps = 22/327 (6%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V+R W DS++ G+ + D Y + + + + + R
Sbjct: 140 VVRLGWFTDSVKAGQVLPIDDYVVYQGRKVPRTPAKAPQPVPAERAAERAADVMKRALAD 199
Query: 145 SSTE-----DVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP--DF--SSH 195
+ + ++G+ T S P+ ++ + A P DF +++
Sbjct: 200 AGGQSRSPRPGSSSSRGARGETYT---SHPVRPPLVRQTTSEHEIDAQLPPIPDFLHTTY 256
Query: 196 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD- 254
P+ ++ P N+ E K+ +G+ +Y AI I P+ ++A
Sbjct: 257 SCQRPTPVHPP---NEAFIEELAKIKTARTLVGDKIGVRAYSSAIATIAAYPYTFQTAQE 313
Query: 255 ----QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
+V LPG G + QE TG++ + E D K+ + LF +WG+ TA+
Sbjct: 314 NRSTEVSRLPGCGNKIALLFQEFKDTGQIREAREDESDPKLAVLKLFYNIWGVAETTARD 373
Query: 311 LYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
Y +G R LDD+ ++LT Q++G+KY+D+ + RIPR EVE + ++ ++
Sbjct: 374 FYNRGWRDLDDIVEYGWETLTRVQQIGVKYYDEFQQRIPRAEVEAIANVILAHANQIRDG 433
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPD 395
++ G YRRGK + GD+DVV+ H D
Sbjct: 434 FEMVIVGGYRRGKEASGDVDVVLSHRD 460
>gi|320166711|gb|EFW43610.1| hypothetical protein CAOG_01654 [Capsaspora owczarzaki ATCC 30864]
Length = 852
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/458 (22%), Positives = 203/458 (44%), Gaps = 73/458 (15%)
Query: 3 PKTTRKPTPALD--SNGIFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-LSKKV 58
P KP+ A+ ++ IF G+R F++ G + +R + K+V G T L +
Sbjct: 221 PTVDVKPSVAVPVVAHQIFTGVRAFVLASGTISQQRKALLESKIVHAGGTTSVCILPQST 280
Query: 59 THV-----LAMD--LEALLQ---------QVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
TH+ L+ D + A+ Q +V H A V+ W+ +SL G ++
Sbjct: 281 THIIVGSDLSYDRLVNAIAQFSPSTKVKLEVPASHAAPL---VLSADWVTNSLVRGRRLP 337
Query: 103 EDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH-----------RKKIKSSTEDVE 151
++ + I+ P LS++ + S ES+ + ++ +E
Sbjct: 338 DEDFVIRTGP-----TTSALSRVPNPSSQESSTESASPHSPLPTAAACKAASPAAPSSLE 392
Query: 152 HFQAESKGDVE--------TNAL--------------SEAPNSPMSSE-SLTNTLSTASA 188
+++S+ ++ T+A SE P + E S T+ +++
Sbjct: 393 WLESDSENGIDLVSDEFDSTSAAHPPAAFTTFRPSRKSEVPPAMRHREVSSTDDADSSAE 452
Query: 189 SPDFSSHHITDPSLLYNPP----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE 244
+ S+ ++P + P N +IT+ + + Y G++ R+ + +++ VI
Sbjct: 453 DTNASASPFSNPKYVCFLPVPRQHSNMHITDQLACIEDFYFLSGDESRALAMRRSLCVIA 512
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
LP ++ ++ L +G+S + ++EI+ G+ + D K T+ F ++G G
Sbjct: 513 ALPRRLTRIQDIQSLHNMGQSSRAIVKEILDKGRSTAATCMANDPKYTTMLQFRSIYGCG 572
Query: 305 PATAQKLYEKGHRTLDDLKNEDSLT-----HSQRL--GLKYFDDIKTRIPRHEVEQMERL 357
AQ LYE+G+RT+ ++ + S ++RL GL ++ +++PR EV+Q+
Sbjct: 573 QRIAQALYERGYRTIAEICADRSWVADFPLSAERLEWGLTLHTELGSQVPRDEVKQLGDC 632
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ K +LP V++ GG YRRGK + D D + H D
Sbjct: 633 VYKYANTILPGVMMTIGGGYRRGKPASKDCDFIFTHND 670
>gi|320589082|gb|EFX01550.1| hypothetical protein CMQ_6492 [Grosmannia clavigera kw1407]
Length = 686
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 5/194 (2%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ + K+ I +G++ +Y AI + P + SA +V LPG G
Sbjct: 283 HPP--NEKFIDSLKKIQRIRELMGDEIGVRAYSTAIASLAAYPHVLSSAAEVSRLPGCGP 340
Query: 265 SMQDHIQEI-VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + +E T G + + + E D K+ + LF ++WG+ ATA+ + +G R LDD+
Sbjct: 341 KIAELYREYSATGGHVQEADDAESDPKICVLRLFCDIWGVAEATARSFHNRGWRDLDDVV 400
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L Q++G+KY+D+++ + R +V+ + + + ++ P ++ G YRRGK
Sbjct: 401 EFGWSELGRVQQIGVKYYDELQMTMTRAQVKDIANTVLEQANQIFPGFQMVIAGGYRRGK 460
Query: 382 ASCGDLDVVIMHPD 395
GD+DV++ HPD
Sbjct: 461 KMNGDVDVILSHPD 474
>gi|157830423|pdb|1BPB|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|157832157|pdb|1NOM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (5 Millimolar)
gi|157834405|pdb|1ZQU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Artificial Mother Liquor
gi|157834406|pdb|1ZQV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cacl2 (150 Millimolar)
gi|157834407|pdb|1ZQW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cscl (150 Millimolar)
gi|157834408|pdb|1ZQX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Kcl (150 Millimolar)
gi|157834409|pdb|1ZQY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mgcl2 (50 Millimolar)
gi|157834410|pdb|1ZQZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (50 Millimolar)
gi|157834699|pdb|2BPC|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
Length = 248
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTR 345
+D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + R
Sbjct: 3 QDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKR 62
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
IPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 63 IPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 112
>gi|354471127|ref|XP_003497795.1| PREDICTED: DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 510
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + ++ +A V+ LPF I S +G+P +G ++
Sbjct: 163 NCNQLFTDAFDILAENYEFRENEGSCVAFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S++ DE+ ++ LF V+G+G TA+K + G RTL +K+++S
Sbjct: 223 CIIEGIIEDGESSEVIAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTRMQKAGFLYYEDLVSCVNRAEAEAINVLVKEAVAVFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|169621167|ref|XP_001803994.1| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
gi|160704194|gb|EAT78815.2| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
Length = 710
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 7/212 (3%)
Query: 190 PDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
PD+ +H+ + P + N++ E K + R L +D +Y I I P
Sbjct: 323 PDWVKNHVKYACQRFTPANGPNEDFLEHLKK-VRTARTLIDDEIGVRAYSTIIASIAAYP 381
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
K+ ++ LPG + E TG++ +E FE DE ++ + F ++WG+G T
Sbjct: 382 HKLSHPRELAQLPGCDEKTAVLFVEWKNTGRIQAVEDFENDEAMKVLRSFYDIWGVGAKT 441
Query: 308 AQKLYEKGHRT-LDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
A+ Y H T LDD+ + L Q++G+KY+D+ IPR EVEQ+ ++++ +
Sbjct: 442 ARHFYYNNHWTELDDVIEFGWNELDRVQQIGVKYYDEFLVPIPRPEVEQIASVVREHAVQ 501
Query: 365 VLPEVI-ILCGGSYRRGKASCGDLDVVIMHPD 395
+ + I + G YRRGKA+ GD+D+++ HPD
Sbjct: 502 LRDDRISVTIVGGYRRGKAASGDVDMIVSHPD 533
>gi|183448136|pdb|2VAN|A Chain A, Nucleotidyl Transfer Mechanism Of Mismatched Dntp
Incorporation By Dna Polymerase B By Structural And
Kinetic Analyses
Length = 245
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 346
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 1 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 60
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 61 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 109
>gi|295321725|pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
gi|295321726|pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 346
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 2 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 61
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 62 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 110
>gi|330935988|ref|XP_003305205.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
gi|311317881|gb|EFQ86703.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
Length = 709
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 11/218 (5%)
Query: 188 ASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKL 246
ASPD+ +++ + P + N+ E K+ + +D +Y I I
Sbjct: 320 ASPDWVKNYVKYSCQRFTPANGPNEEFLEQLKKIRTARTLIDDDIGVRAYSTIIASIAAY 379
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
PF++ ++ LPG + E TGK+ +E ++ DE ++ + F +WG+G
Sbjct: 380 PFELSHPRELARLPGCDEKTAALFVEWKNTGKIQAVEDYDNDEAMKVLRCFYNIWGVGAK 439
Query: 307 TAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
TA+ Y H T LDDL + L Q++G+KY++++ IPR EVE++ +++ E
Sbjct: 440 TARHFYYNNHWTELDDLVEYGWNDLERVQQIGVKYYEELLLPIPRDEVERIGAIVR---E 496
Query: 364 EVL----PEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
V+ V + G YRRGKA GD+D+++ HPD K
Sbjct: 497 HVVRLRDDRVTVTLVGGYRRGKAESGDVDMIVSHPDVK 534
>gi|449303273|gb|EMC99281.1| hypothetical protein BAUCODRAFT_85556 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 5/182 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I + R L D +Y +I + P+KI S ++ LPG + + + E TG
Sbjct: 351 KKIKLARLLTNDEIGVRAYSTSIASLAAYPYKIVSPREIMALPGCDQKIANLFVEWANTG 410
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK--NEDSLTHSQRL 334
+ +E + D+ ++ + LF E+WG+G TA++ Y ++G R LDD+ +LT Q++
Sbjct: 411 TIKAVEDVDADDDLKVLRLFWEIWGVGATTAREFYFDRGWRDLDDIVEFGWSTLTRVQQI 470
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMH 393
G+KY+++ IPR EVE++ R++ + +V + V L G YRRGK +CGD+D+++ H
Sbjct: 471 GVKYYEEFLDPIPRAEVEEIGRIIHRHAVKVRDDGVQSLIVGGYRRGKQACGDVDMIVSH 530
Query: 394 PD 395
D
Sbjct: 531 ID 532
>gi|392560797|gb|EIW53979.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 601
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 43/219 (19%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P +I S QV+ LP IG + + E + G
Sbjct: 241 IIRQSRALEGEDRSALSYQRAISVIKAYPERIRSLKQVQKLPYIGVKISGLVDEFLDNGH 300
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---------------- 322
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL
Sbjct: 301 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVEPSSSPTQPS 360
Query: 323 -------------------KNEDSLTHSQRLGLKYF-------DDIKTRIPRHEVEQMER 356
K++D + LG + +D+ IPR EVE++ R
Sbjct: 361 QIVEVEPEKSRQAGWKGPGKDKDKGGQDEGLGESWIRVALGLREDLSKMIPRDEVEEIGR 420
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + + + P + G YRRGK D+D+V HPD
Sbjct: 421 VVMRELDALEPGCVSTIVGGYRRGKTESNDVDIVFTHPD 459
>gi|392578789|gb|EIW71916.1| hypothetical protein TREMEDRAFT_26921 [Tremella mesenterica DSM
1558]
Length = 785
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 250 IESADQVKGL-PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
I S Q + L GIG+ + D I E +T K E++E EK +TIS+F +++G+G + A
Sbjct: 499 ITSGAQARSLLIGIGQGIADRIDEFLTGSK--GREYYENTEKAKTISMFKDIYGVGKSFA 556
Query: 309 QKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+LY +G RT++DL+ E L+ Q++G++ + D+ +RIPR E +Q+ L++ + ++ P
Sbjct: 557 NELYRRGARTIEDLREKEYGLSKGQKIGVELYSDLISRIPRKECKQLYDLIRSSALDIDP 616
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
V + GSYRRG GD+D++I D
Sbjct: 617 MVWVEIMGSYRRGGVDSGDVDILITRDD 644
>gi|452843899|gb|EME45834.1| hypothetical protein DOTSEDRAFT_71509 [Dothistroma septosporum
NZE10]
Length = 718
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 96/165 (58%), Gaps = 4/165 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y I + P+KI ++ LPG + + + E +G + +E DE ++ +
Sbjct: 369 AYSTFIASLRAYPYKISHPKELLRLPGCEQKLANLWVEWKNSGTIKAVEELRADEDLKHL 428
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF ++WG+G TA++ Y EKG R LDD+ +L+ Q++G+K++D+ + IPR EV
Sbjct: 429 RLFYDIWGVGATTAREFYFEKGWRELDDIIEYGWKTLSRVQQIGVKFYDEFQDLIPRAEV 488
Query: 352 EQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMHPD 395
E + ++++ +V + I I+ G YRRGK + GD+DV++ HP+
Sbjct: 489 ESICEVIRQHAVKVCDDGIKIMIVGGYRRGKEASGDVDVIVSHPE 533
>gi|353238336|emb|CCA70286.1| related to DNA-directed DNA polymerase lambda [Piriformospora
indica DSM 11827]
Length = 545
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 22/203 (10%)
Query: 210 NKNITEIFGKLINIYRAL-GEDR--RSFSYYK---------------AIPVIEKLPFKIE 251
N+++ + +L N YR G+D R ++Y K AI I +IE
Sbjct: 200 NQDVVDKLRELANTYRNRPGDDYHWRVYAYSKGDYLKMLTCNLTRSVAIASIRNCKHRIE 259
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S ++ G+ G+G + I E++ TG L ++ +E+DE+ + +F ++G+G A
Sbjct: 260 SLEEALGIHGVGVKTAEKIMEVIRTGNLKRIR-YEQDERTVIVGIFRGIYGVGTTVAYDW 318
Query: 312 YEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
Y +G RTL+D+K LT +Q +G+KY++D+ +R+PR E + + + + +
Sbjct: 319 YSRGLRTLEDVKQRRFGIKLTAAQDIGVKYYEDLASRMPREEAKDIFDQIVTHAHSIDSK 378
Query: 369 VIILCGGSYRRGKASCGDLDVVI 391
+ + GSYRRG+ +CGD+D++I
Sbjct: 379 LSVEIMGSYRRGEETCGDIDILI 401
>gi|298712876|emb|CBJ33393.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 428
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 10/194 (5%)
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP--------GIG 263
N+ E KL + G + + A V+ +L +I + Q+K L G+G
Sbjct: 40 NMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGVQITNIQQLKDLRKHEPQRVRGLG 99
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
S+ + G++ +L+ E D K++ + + EV +G AQ+LY+KG R+++DL+
Sbjct: 100 DSVMKELSTFYEEGRMHRLDGLEADPKLKCLKILQEVGWVGAVKAQQLYDKGVRSIEDLR 159
Query: 324 NEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
+ L+ ++ L +DI R+PR E ++E ++ K + + P VI GSYRRGK
Sbjct: 160 TKGLHLLSEQAQICLSRHEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQACGSYRRGK 219
Query: 382 ASCGDLDVVIMHPD 395
+ CGD+DV+I P+
Sbjct: 220 SHCGDVDVLIRPPE 233
>gi|134114790|ref|XP_773693.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256321|gb|EAL19046.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 791
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 108/189 (57%), Gaps = 5/189 (2%)
Query: 210 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 464 NEWLAEKFDQLHDLYEGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQAREINGIGEALA 523
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E ++ + +E +E R ++LF +++G+G A +LY G RT+ DL+
Sbjct: 524 ERINEFIS--GVPGRTFYEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRF 581
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q++GL ++D+++RIPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 582 PLSTGQQIGLALYEDLRSRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 641
Query: 387 LDVVIMHPD 395
+D++I D
Sbjct: 642 VDILITRDD 650
>gi|410975770|ref|XP_003994302.1| PREDICTED: DNA nucleotidylexotransferase [Felis catus]
Length = 543
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 196 NFNHIFTDAFEVLAENYEFKENEISSATFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 255
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 256 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 315
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 316 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 375
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 376 DVDFLITIP 384
>gi|112734847|ref|NP_033371.2| DNA nucleotidylexotransferase isoform 1 [Mus musculus]
gi|17380506|sp|P09838.3|TDT_MOUSE RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|12802441|gb|AAK07884.1|AF316014_1 terminal deoxynucleotidyl transferase long isoform [Mus musculus]
gi|26352882|dbj|BAC40071.1| unnamed protein product [Mus musculus]
gi|26353776|dbj|BAC40518.1| unnamed protein product [Mus musculus]
gi|148709903|gb|EDL41849.1| deoxynucleotidyltransferase, terminal [Mus musculus]
gi|151556624|gb|AAI48335.1| Deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 530
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>gi|25187910|emb|CAA48634.2| deoxynucleotidyltransferase [Mus musculus]
Length = 510
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>gi|395501816|ref|XP_003755286.1| PREDICTED: DNA nucleotidylexotransferase [Sarcophilus harrisii]
Length = 517
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y ++ +A V++ LPF I S +GLP IG ++
Sbjct: 166 NQRFTDAFEILAKNYEFRENHGHCLTFLRATSVLKCLPFAIVSMKDAEGLPWIGDEVKGI 225
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
++EI+ G+ +++ DE+ + LF V+G+G TA+K Y G RTL ++++ SL
Sbjct: 226 MEEIIEDGQSLEVQAVLNDERYQAFKLFTSVFGVGLKTAEKWYRMGFRTLSKIQSDKSLK 285
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
T Q+ G Y++D+ + + + E + + ++++A LP+ +I G +RRGK D+
Sbjct: 286 FTKMQKAGFLYYEDLISCVSKAEADAVSLIVKEAVWTFLPDALITITGGFRRGKEFGHDV 345
Query: 388 DVVIMHP 394
D +I P
Sbjct: 346 DFLITSP 352
>gi|311271684|ref|XP_003133204.1| PREDICTED: DNA nucleotidylexotransferase-like [Sus scrofa]
Length = 510
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNHIFTDAFEVLAENYEFRENETFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T+++ + G R+L ++++ +
Sbjct: 223 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSERWFRMGFRSLSKIRSDKT 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|112734841|ref|NP_001036693.1| DNA nucleotidylexotransferase isoform 2 [Mus musculus]
gi|12802443|gb|AAK07885.1|AF316015_1 terminal deoxynucleotidyl transferase short isoform [Mus musculus]
gi|74137150|dbj|BAE21978.1| unnamed protein product [Mus musculus]
Length = 510
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>gi|18655690|pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 34 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 93
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 94 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 153
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 154 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 213
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 214 DVDFLITSPE 223
>gi|301763246|ref|XP_002917036.1| PREDICTED: DNA nucleotidylexotransferase-like [Ailuropoda
melanoleuca]
Length = 510
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 223
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 224 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 283
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 343
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 344 DVDFLITSP 352
>gi|281348517|gb|EFB24101.1| hypothetical protein PANDA_005205 [Ailuropoda melanoleuca]
Length = 509
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 222 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 342 DVDFLITSP 350
>gi|441432439|ref|YP_007354481.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
gi|440383519|gb|AGC02045.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
Length = 357
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 103/161 (63%), Gaps = 9/161 (5%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGTSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
+V GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ ++ IPR E+
Sbjct: 108 KVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGVVEGNIPRKEIT 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
Q+E+ L +++ ++ ++ GSYRRGK + GD+DV++ H
Sbjct: 168 QIEKYLVSQAKDINEDLELIICGSYRRGKPTSGDIDVLMYH 208
>gi|307110952|gb|EFN59187.1| hypothetical protein CHLNCDRAFT_138091 [Chlorella variabilis]
Length = 587
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 11/156 (7%)
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ES + V +PG+G + ++EI+ G S++ DE+ + ++ EVWG G A+A
Sbjct: 295 LESEEDVDKVPGLGPKSKVKVKEILAKGTSSRIAAAAADEQRKVLTTLLEVWGTGTASAS 354
Query: 310 KLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL- 366
+ Y G RTLD+L++ +LT QR+GLKY+DD+K +IPR EV Q E+++++ E++
Sbjct: 355 RWYSLGVRTLDNLRSRTDLNLTEQQRVGLKYYDDLKQKIPRAEVAQTEKIVRETCFELIE 414
Query: 367 --------PEVIILCGGSYRRGKASCGDLDVVIMHP 394
GSY RGK D+D++I P
Sbjct: 415 RWGGTADVERTYCSATGSYLRGKPQSSDVDILICLP 450
>gi|405974067|gb|EKC38737.1| DNA polymerase beta [Crassostrea gigas]
Length = 373
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP-------- 260
NK+ + +L N + + + +Y KA+ V+ K P +++S + K L
Sbjct: 13 NKDFCDFLMELANYEKNVNRQMHKYNAYRKAVGVLAKHPTRVKSGAEAKKLARTRLVISY 72
Query: 261 ---------------------------GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
GIG + I E + TG L KLE D+
Sbjct: 73 FFKIIFAPRSTSQVLSLAGLIPSVPGDGIGDKIAKKIDEYIDTGSLRKLEKIRADDTSVA 132
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
I+ +V GIGPA AQKL ++G ++++L K+ D L H Q++GLK+F+D + RIPR E+E
Sbjct: 133 INELTKVTGIGPAAAQKLVQEGITSIEELRKHPDKLNHHQQIGLKHFEDFEKRIPRAEME 192
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
Q++ ++ + GS+RRG S GD+D+++ HPD
Sbjct: 193 QIQDTAFSEIRKLDDKFEARVCGSFRRGAESSGDIDILLTHPD 235
>gi|338716705|ref|XP_001501812.3| PREDICTED: DNA nucleotidylexotransferase [Equus caballus]
Length = 508
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + ++ +A V++ LPF I S ++G+P + +
Sbjct: 162 NCNQVFTDAFDVLAENYEFRENESSCLTFMRAASVLKSLPFTIISMKDIEGIPCLEDKAK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ +
Sbjct: 222 CVIEEIIEDGESSEVKTVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKT 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTKMQKAGFLYYEDLVSCVTRPEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 342 DVDFLITSP 350
>gi|21465815|pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
gi|21465825|pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 16 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 76 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 135
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 136 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 195
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 196 DVDFLITSPE 205
>gi|345569152|gb|EGX52020.1| hypothetical protein AOL_s00043g410 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT---GKLSKLEHFEKDEKV 291
+Y +I I P KI Q+ LPG + E + G+L LE EK
Sbjct: 260 AYSTSIASIAAFPHKITHISQIHALPGCEGKIGALWYEFTHSEPPGRLGVLEETEKSVYY 319
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+T+ LF VWG G +AQ Y++G R LDDL + LT Q++G+K++D+ + +IPR
Sbjct: 320 KTLELFYNVWGAGAHSAQSFYKQGFRDLDDLVEHHWKKLTRVQQIGVKFYDEFQDKIPRD 379
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
EV + +Q ++LP G +RRGK D+D++I HP
Sbjct: 380 EVISIRDAIQNHARQLLPGAETAVVGGFRRGKELSADVDLLITHP 424
>gi|322709493|gb|EFZ01069.1| terminal deoxynucleotidyl transferase, putative [Metarhizium
anisopliae ARSEF 23]
Length = 604
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 12/211 (5%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKL 246
P+F +++ P+ L+ PP+ K I E+ K I R L G +Y +I +
Sbjct: 221 PEFLHTTYSCQRPTPLH-PPN-EKFILEL--KKIRTLRLLQGNQIGVRAYSTSIAALSAY 276
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
P I++ ++ LPG + + QE + G+ + D K+ T+ LF ++WG+G
Sbjct: 277 PHVIQN---IERLPGCSTKIAELYQEWLKDGETKETAAAASDAKMSTLMLFYDIWGVGDT 333
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
TA++ Y KG + LDDL SLT Q++G+K++D+ + IPR EVE++ L+ + +
Sbjct: 334 TAREFYNKGWKDLDDLVEYGWSSLTRVQQIGVKFYDEFQQMIPRQEVEEIASLVLQHARK 393
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + G YRRGK GD+DV++ H D
Sbjct: 394 IEAGFQMAIVGGYRRGKKESGDVDVILSHRD 424
>gi|320583635|gb|EFW97848.1| Mitochondrial intermediate peptidase [Ogataea parapolymorpha DL-1]
Length = 1600
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 13/195 (6%)
Query: 210 NKNITEIFGKLINIYRALG--EDRRSF---SYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + + F + I IY + + +F +Y AI IE L + SA +K
Sbjct: 118 NAKVVKRFEEAIRIYELMQFFDKNNAFRIKNYRLAISAIESLDKPLTSAQDLKQFGLDRG 177
Query: 265 SMQDHIQEIVTTGKLSKLEHFEK----DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ H++EI+ TG SKLE ++ DE+ + ++ F +++G+G TA + + G++++
Sbjct: 178 GIAQHVEEILQTGTFSKLETLKQQEMGDERYQLMTQFKKIYGVGDKTAYRFVKAGYKSIQ 237
Query: 321 DLKNED----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
D+ ++ SLT +Q+LG+ YFD+ RIPR EVE+ + + EE+ + ++ GS
Sbjct: 238 DIVHDQEMYASLTDAQKLGILYFDEWNERIPRTEVEEHYNFVVREAEEIDKNLKVMLMGS 297
Query: 377 YRRGKASCGDLDVVI 391
YRRG + GD+D+++
Sbjct: 298 YRRGAETSGDIDLIV 312
>gi|119495890|ref|XP_001264721.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
gi|119412883|gb|EAW22824.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
Length = 674
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 82/130 (63%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+LDDLK +
Sbjct: 405 LADKIEEIVFTNRLRRLENANNTPEDLVLQEFLGVYGAGISQASRWIAQGYRSLDDLKTK 464
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG + G
Sbjct: 465 ASLTKSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRGASDSG 524
Query: 386 DLDVVIMHPD 395
D+D++I D
Sbjct: 525 DIDLLITKGD 534
>gi|402081123|gb|EJT76268.1| DNA polymerase beta [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 599
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 10/248 (4%)
Query: 154 QAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPSLLYNPPDLNK 211
Q +K T+ S+ P+ S S PDF + + P+ ++ P N+
Sbjct: 180 QPTAKTSTATHRSSQVPSLLRQSTSEHEAARHMPTMPDFLRTVYSCQRPTPIHPP---NE 236
Query: 212 NITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
K I R L DR +Y A+ + P+ + S ++V LP G
Sbjct: 237 AFINQLAK-IKTTRLLAGDRIGVRAYSSAMASLAAYPYVLASPEEVDRLPNCGPKFAVLF 295
Query: 271 QEIVTTGK-LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDS 327
QE G + + + E D K+ I F +VWG+G TA+K Y+ G R LDD+ ++
Sbjct: 296 QEFQRQGGVIREAQEAELDPKLSVIKNFYDVWGVGDVTAKKWYDNGWRDLDDVVEYGWET 355
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q++G+K++D+ +IPR EVE++ + + + ++ G YRRG GD+
Sbjct: 356 LTRDQQIGVKFYDEFLLKIPRDEVEKIADTILEHANRLRNGFQMVIVGGYRRGNKESGDV 415
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 416 DIMLSHPD 423
>gi|254571841|ref|XP_002493030.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|238032828|emb|CAY70851.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|328352960|emb|CCA39358.1| DNA polymerase IV [Komagataella pastoris CBS 7435]
Length = 563
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 4/190 (2%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I F ++ + G +S SY +AI I+ P +IE + +P IGKS+ DH
Sbjct: 212 NELIIHYFSQMAKERKVEGLQFKSLSYLRAINAIKNAPKEIECREDALSIPKIGKSLADH 271
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN---E 325
EI+ T K +L+ ++ + + ++ G+G ++K + G R++ D+ E
Sbjct: 272 CVEIIETRKFGQLKRQQESTEAHVMKELQKIHGVGAVISEKWFNHYGVRSIPDIFEKVPE 331
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
T + +LGL Y+ D +IPR EV + G+++ P+ I+ GSYRR +CG
Sbjct: 332 SEFTDAIKLGLYYYYDWNQKIPREEVTAHSEFVSDVGKKIDPKFIVQTVGSYRRETKTCG 391
Query: 386 DLDVVIMHPD 395
D+D IM D
Sbjct: 392 DVDFFIMKED 401
>gi|339522243|gb|AEJ84286.1| DNA polymerase beta [Capra hircus]
Length = 141
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANCEKNVTQAIHKDNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLK 337
L H QR+GLK
Sbjct: 131 KLNHHQRIGLK 141
>gi|296220892|ref|XP_002756529.1| PREDICTED: DNA nucleotidylexotransferase [Callithrix jacchus]
Length = 510
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 22/218 (10%)
Query: 198 TDPSLLYNPP---------------DLNKNITEIFGKLINIYRALGEDRRS----FSYYK 238
T+P LL PP LN N +IF +I E R + ++ +
Sbjct: 135 TNPGLLKTPPIAVQKISQYACQRRTTLN-NFNQIFTDAFDILAENCEFRENEDSCVTFMR 193
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++ LF
Sbjct: 194 AASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEIIEDGESSEVKAVLNDERYQSFKLFT 253
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMER 356
V+G+G T++K + G RTL +++E SLT + QR G Y++D+ + + R E E +
Sbjct: 254 SVFGVGLKTSEKWFRMGFRTLSKVRSEKSLTFTRMQRAGFLYYEDLVSCVTRAEAEAVSV 313
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
L+++A LP+ I G +RRGK D+D +I P
Sbjct: 314 LVKEAVWAFLPDAFITMTGGFRRGKKMGHDVDFLITSP 351
>gi|224052619|ref|XP_002191940.1| PREDICTED: DNA nucleotidylexotransferase [Taeniopygia guttata]
Length = 505
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 121/231 (52%), Gaps = 8/231 (3%)
Query: 166 LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR 225
+ ++P+ P+++ L A+ +S T + + NK T+ F + Y
Sbjct: 126 MEQSPSPPLNTPELEMPALIATKVSQYSCQRKTTLN------NYNKKFTDAFEVMAENYE 179
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
+ S + +A +++ LPF + S ++GLP +G ++D I+EI+ G+ S+++
Sbjct: 180 FKENEIFSLEFLRAASLLKSLPFSVTSMKDIQGLPCVGDQVRDIIEEIIEEGESSRVKEV 239
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIK 343
DE+ + F V+G+G T++K Y G RT++++K E +L S Q+ G+ Y++D+
Sbjct: 240 LNDERYKAFKQFTSVFGVGVKTSEKWYRMGLRTVEEVKAEKTLKLSKMQKAGILYYEDLV 299
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ + + E + + +++ LP+ ++ G +RRGK D+D +I +P
Sbjct: 300 SCVSKAEADAVSLIVKNTVCTFLPDALVTITGGFRRGKNIGHDIDFLITNP 350
>gi|432901792|ref|XP_004076949.1| PREDICTED: DNA nucleotidylexotransferase-like, partial [Oryzias
latipes]
Length = 355
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+ F L Y + + ++ +A V++ L +++ S+ QV LP +G++M++
Sbjct: 150 NKTLTDAFEVLAENYEFNEMEGQCLAFRRAASVLKSLSWQVRSSHQVHDLPCLGETMEEL 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ ++ DE+ +T+ F V+G+G TA+K Y +G RT D+ E S
Sbjct: 210 VEEILQYGRSFEVAKILSDERFQTLKGFTSVFGVGLKTAEKWYRRGLRTFPDVMAEPSIR 269
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L Q+ G ++ DI + + E + ++ +A + P I+ G +RRGK D+
Sbjct: 270 LNRMQQSGFLHYGDISRHVSKAEALALGNIIDEAVHAIAPNGILTLTGGFRRGKEFGHDV 329
Query: 388 DVVIMHPDR 396
D ++ P+R
Sbjct: 330 DFIVTTPER 338
>gi|61553055|gb|AAX46342.1| polymerase (DNA directed), mu [Bos taurus]
Length = 341
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
T Q+ GL++ D+ I R +VE +++ ++ A + LP + GS+RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGSFRRA 320
>gi|405122355|gb|AFR97122.1| DNA polymerase lambda [Cryptococcus neoformans var. grubii H99]
Length = 598
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 108/189 (57%), Gaps = 5/189 (2%)
Query: 210 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 253 NEWLAEKFDQLHDLYNGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQARKINGIGEALA 312
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E ++ + +E +E R ++LF +++G+G A +LY+ G RT+ DL+
Sbjct: 313 ERINEFISG--VPGRAFYEDNEHARCVALFKDIYGVGRQYANELYQMGARTITDLRTGRF 370
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q++GL ++D+++ IPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 371 PLSPGQQIGLALYEDLRSLIPREECKQIFELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 430
Query: 387 LDVVIMHPD 395
+D++I D
Sbjct: 431 VDILITRDD 439
>gi|336385326|gb|EGO26473.1| hypothetical protein SERLADRAFT_447668 [Serpula lacrymans var.
lacrymans S7.9]
Length = 541
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 59/361 (16%)
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V A+ ++ L++ LA+ K +++ QWLEDS++ G + P G+ A
Sbjct: 105 VTAVHMKQRLERHVDWELAKSK-AIVTPQWLEDSVKYGRPM----------PCGDYAALN 153
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
VL + + E R S + + S+ + + E P LT
Sbjct: 154 VL-------HDETVHECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLT 206
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
+T S + S L P N+ + + K+ GE+R SY +AI
Sbjct: 207 HT----------SRYCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAI 253
Query: 241 PVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
VI+ P I ++ ++ LP +G+ + ++E + TG++++ + + + +S F
Sbjct: 254 SVIKAFPHVITHSNLKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAF 313
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLK-------------------------NEDSLTHSQ 332
+ GIGP TA+KLY G RTL+DL+ +E + S
Sbjct: 314 TTIHGIGPHTARKLYNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSI 373
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++ L D IPR EVE+M R++ E++ + G YRRGK D+D+VI
Sbjct: 374 KVALALRHDFSQTIPRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVIS 433
Query: 393 H 393
H
Sbjct: 434 H 434
>gi|449277136|gb|EMC85412.1| DNA nucleotidylexotransferase [Columba livia]
Length = 506
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 102/189 (53%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + S + +A V++ LPF + ++GLP +G ++
Sbjct: 162 NYNKKFTDAFEIMAENYEFKENEIFSLEFQRAASVLKFLPFPVTRMKDIQGLPCMGDRVR 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K Y G RTL+++K + +
Sbjct: 222 DVIEEILEEGESSRAKEVLNDERYKSFKQFTSVFGVGVKTSEKWYRMGLRTLEEVKADKT 281
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L+ Q+ G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 282 VKLSKMQKAGFLYYEDLVSCVSKAEADAVNMVVKNTVYTFLPDALVTITGGFRRGKNIGH 341
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 342 DIDFLITSP 350
>gi|298712875|emb|CBJ33392.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 782
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 57/437 (13%)
Query: 15 SNGIFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEKLSK-KVTHVLAM-------- 64
++G F+G+ + +V +G V N + ++ G V + TH++A
Sbjct: 57 ASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWE 116
Query: 65 ----------DLEALLQQVSKQHLARFKGSV--IRYQWLEDSLRLGEKVSEDLYRIKLDP 112
D E ++ + R V + +W+ + LR E V+ + YR+ P
Sbjct: 117 KLDDYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRLT-PP 175
Query: 113 EGENIADRVLSQIQ---------------GNGNTSSDGESSHRKKIKSSTEDVEHFQAES 157
A ++ Q ++S+ ++ +K+I +S +
Sbjct: 176 LHHCAAPATVAPKQQQRSSTATTETNAAAEGCSSSASPAATGKKRILTSGGHQTTGGLVA 235
Query: 158 KGDVETNALSEAPNSPMSSESLTNTLSTASA-SPDFSSHHITD--PSLLYNPPDLNKNIT 214
+ +A +P+ ++ L N A P+ ++ PS + P NK
Sbjct: 236 TRNQRGDAARGSPSGRGAAARLMNLEGEVGARKPNVDMRRVSQGQPSSFWGPQSPNKEAA 295
Query: 215 EIFGKLINIYRALGEDRRSFS---YYKAIPVIEKLPFKIESADQVKGLP--------GIG 263
++ L + G D F+ + A + L +I +Q+K L G+G
Sbjct: 296 DMLDGLAELCATRGGDGSVFNERGFKSAAAALRMLGTQITDIEQLKDLRKNDPERVRGVG 355
Query: 264 KSMQDHIQEIVTTGK---LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ + GK + + + + LF EV +G A++LY+KG R+++
Sbjct: 356 DGAMKELTAFLAEGKGKSRAPVSGADPPAPEACLKLFQEVGWVGAVKARQLYDKGMRSIE 415
Query: 321 DLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL+ D LT R+ L +DIK R+PR E ++E + K + + P VI GSYR
Sbjct: 416 DLRTSGRDLLTEQMRVCLNRHEDIKQRMPRSEAAEIEAAVTKVAQSICPGVICQACGSYR 475
Query: 379 RGKASCGDLDVVIMHPD 395
RGK++CGD+DV+I P+
Sbjct: 476 RGKSNCGDVDVLIRPPE 492
>gi|33860211|sp|O57486.2|TDT_AMBME RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|28852989|gb|AAB92673.2| matrice independent polymerase [Ambystoma mexicanum]
Length = 510
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 210 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 386 DLDVVIMHP 394
D+D++I P
Sbjct: 339 DVDMLITSP 347
>gi|196013715|ref|XP_002116718.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
gi|190580696|gb|EDV20777.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
Length = 525
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/384 (22%), Positives = 169/384 (44%), Gaps = 54/384 (14%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL--AMDLEALLQQVSK 75
IF + V++V + N+R+Q +Q + G + E S KVTH++ ++ + +
Sbjct: 24 IFHDICVYIVPIKLPNQRVQFLKQLAAKKGFPIAESYSPKVTHIVTAVTSIDRIKAHLDS 83
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
+++ + + V+ +WL S G+ + DR
Sbjct: 84 ENINKVE--VVSVEWLTTSFTDGQPT--------------RVTDRF-------------- 113
Query: 136 ESSHRKKIKSSTEDVEHFQA-ESKGDVETNA-LSEAPNSPMSSESLTNTLSTASASPDFS 193
+ + + +E F A + + +E N LS+ SS LT + D
Sbjct: 114 -----RLVPKKSLSLERFSAFDRQASLENNTQLSDGSADGESSLQLTKYECQRVTTLDHY 168
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+ + + + E LI ++ G R+ ++ ++ ++ LP +IE+
Sbjct: 169 NRKLVEAL----------ELLESHALLIGGEQSQG---RALAFKRSSTAMKGLPKEIENV 215
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
D++ L +G I EI+T G ++E E + LF ++G+GP TA+ Y+
Sbjct: 216 DEISSLRHLGNHSLRIIGEILTKGYSDEVEQIRNSEFYKATKLFNNIFGVGPTTARYWYD 275
Query: 314 KGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
KG RT DDL+N + LT Q+ GL +D++ + + +++ ++Q + +LP
Sbjct: 276 KGLRTFDDLRNSEIIKLTDRQQSGLDNYDELCEPVTLEQAQRIRDMVQNEIDIILPGTKS 335
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD 395
+ G +RRGK + D D++I HP+
Sbjct: 336 MLVGGHRRGKKAGHDTDILIWHPE 359
>gi|396479682|ref|XP_003840813.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
gi|312217386|emb|CBX97334.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
Length = 706
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y I I P+K+ +V LPG + E TGK+ ++ +E DE ++ +
Sbjct: 365 AYSTIIASIAAYPYKLRHPREVAQLPGCDEKTAVLFVEWKNTGKIQAVQDYEDDEAMKVL 424
Query: 295 SLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF +WG+G TA+ Y H T LDD+ D L Q++G+KY D+ IPR EV
Sbjct: 425 RLFYNIWGVGAKTARHFYYNNHWTELDDIIEYGWDDLDRVQQIGVKYCDEFLVPIPRPEV 484
Query: 352 EQMERLLQKAGEEVL----PEVIILCGGSYRRGKASCGDLDVVIMHPD 395
EQ+ +++ E V+ + G YRRGK+ GD+D+++ HP+
Sbjct: 485 EQIASVVK---EHVVRLRDDRATVTIVGGYRRGKSESGDVDMIVSHPE 529
>gi|452000344|gb|EMD92805.1| hypothetical protein COCHEDRAFT_1193188 [Cochliobolus
heterostrophus C5]
Length = 658
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 300 KKIRTNRILIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 359
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 334
K+ ++E E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 360 KIKEVEDCENDEAMKVLRSFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 419
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G+KY+++ + IPR EVE + +++ ++ E I I G YRRGK+ GD+D+++ H
Sbjct: 420 GIKYYEEFQEPIPRAEVEHIAAVVRDHAVKLRDEHISITIVGGYRRGKSVSGDVDIIVSH 479
Query: 394 PD 395
P+
Sbjct: 480 PE 481
>gi|355782991|gb|EHH64912.1| hypothetical protein EGM_18244 [Macaca fascicularis]
Length = 510
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|332239611|ref|XP_003268994.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Nomascus leucogenys]
Length = 522
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ L + + Q++GLP +G+
Sbjct: 181 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALASPVTTLSQLQGLPHLGEHSSRV 240
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ L
Sbjct: 241 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRQQPQKL 300
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 301 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 360
Query: 389 VVIMHP 394
+I HP
Sbjct: 361 FLITHP 366
>gi|388454490|ref|NP_001253623.1| DNA nucleotidylexotransferase [Macaca mulatta]
gi|355562663|gb|EHH19257.1| hypothetical protein EGK_19933 [Macaca mulatta]
gi|383416293|gb|AFH31360.1| DNA nucleotidylexotransferase isoform 1 [Macaca mulatta]
Length = 510
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|54766|emb|CAA27735.1| DNA nucleotidylexotransferase [Mus musculus]
Length = 529
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 104/190 (54%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMGASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E + + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTKMQKAGFLYYEDLVSCVNRPEAQAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>gi|185132129|ref|NP_001118178.1| DNA nucleotidylexotransferase [Oncorhynchus mykiss]
gi|6094445|sp|Q92089.1|TDT_ONCMY RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|1354475|gb|AAB01980.1| terminal deoxynucleotidyl transferase [Oncorhynchus mykiss]
Length = 501
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Query: 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
++ +A V++ LP + ++GLP +G+ + ++EI+T G+ K+E DE+ +
Sbjct: 179 CLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFGRSFKVEEIRCDERYQ 238
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHE 350
+ LF V+G+GP TA+K Y +G R+L ++ E + L QR G Y+ DI + + E
Sbjct: 239 ALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAGFLYYSDISKAVSKAE 298
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + +++ + P+ I+ G +RRGK D+D ++ P+
Sbjct: 299 AKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
>gi|406868241|gb|EKD21278.1| DNA polymerase beta [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 665
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 4/189 (2%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E K+ I G+ SY AI I PFKI+ +V L G+
Sbjct: 304 NDEFVEQLRKIKKIREIEGDQVGFRSYNAAIASIAAYPFKIKCLAEVTRLHACGQKFAQL 363
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
E TGK++++E + D++ + I +F + +G TA Y +G R LDD+ +N + +
Sbjct: 364 WYEWHRTGKVAEIEDKKVDDRFKIIEIFYGIHDVGAHTALSYYARGWRDLDDIVENWNKI 423
Query: 329 THSQRLGLKYFDDI-KTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGD 386
+Q++G+KY+D+ K +IPR EV+ + + + P +++CGG YRRGK GD
Sbjct: 424 QRNQQIGVKYYDEFNKMKIPRSEVKNIGDVTLDHANRLRPGFQLVICGG-YRRGKLMSGD 482
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 483 VDIMLSHPD 491
>gi|302848729|ref|XP_002955896.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
gi|300258864|gb|EFJ43097.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
Length = 1420
Score = 99.0 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 88/146 (60%), Gaps = 5/146 (3%)
Query: 225 RALGEDRRSFSYYKAIP----VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
R L DRR KAI V+ ++ + +ES DQ+ L +G+ + + EI+ TG+ S
Sbjct: 940 RDLYMDRRDQFRIKAIDRGMGVLARVSWPLESPDQLSQLR-LGRGTAEKVSEILATGRFS 998
Query: 281 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 340
+ + FE+DE+ T+ F +VWG G +TA+ + G R+LDD++ LT QRLGL++FD
Sbjct: 999 RNDMFEQDEQRMTMMKFMQVWGCGESTARSWWASGARSLDDVRQRTDLTVRQRLGLRHFD 1058
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVL 366
D + RIPR E+ Q+ ++++ E L
Sbjct: 1059 DFQRRIPRAEITQIAAVVRQVTIETL 1084
>gi|255720340|ref|XP_002556450.1| KLTH0H13662p [Lachancea thermotolerans]
gi|238942416|emb|CAR30588.1| KLTH0H13662p [Lachancea thermotolerans CBS 6340]
Length = 558
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 4/190 (2%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
++N N+ + +L + G+ RS SY A+ I+K I S + LP IG S+
Sbjct: 178 EINANLIQFLEQLSAKFHRQGDKFRSRSYQLALQSIKKHGKPITSEEGALSLPNIGPSIA 237
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNED 326
I+ ++ G L L+ + E++ + F +G+G TA+K + G RT D LK
Sbjct: 238 SKIKLVLDVGSLPGLQLSTEREEL--LEYFMNCYGVGSHTARKWADGGARTFKDALKLFP 295
Query: 327 S-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
S + S G KY+DD RIPR E Q ++++ + V P+ I+ GSYRRG A+CG
Sbjct: 296 SDFSWSILFGWKYYDDWTQRIPRQECAQHLKIVESVLQNVDPQARIVITGSYRRGAATCG 355
Query: 386 DLDVVIMHPD 395
D+D+V+ D
Sbjct: 356 DIDMVLYKQD 365
>gi|242007334|ref|XP_002424496.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212507914|gb|EEB11758.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 316
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +A + P KI S + LPGIGKS+ I + TGKL KLE +K+EK I
Sbjct: 39 AYRRAAFALANYPKKISSGREALKLPGIGKSIASKIDIYLKTGKLPKLEKIKKNEKFAAI 98
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
L +V GIGP+ A++L +G R+L DL K + LT QR+GLKYF D +IPR E+
Sbjct: 99 QLLTKVSGIGPSKARELVAQGIRSLKDLNKIKHKLTKHQRIGLKYFHDFLLKIPRSEISI 158
Query: 354 MERLLQKAGEEV 365
+E+ L++ +EV
Sbjct: 159 IEKTLKEEIKEV 170
>gi|440903072|gb|ELR53779.1| DNA polymerase mu [Bos grunniens mutus]
Length = 341
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 1/172 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLQEESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRA 320
>gi|402881070|ref|XP_003904103.1| PREDICTED: DNA nucleotidylexotransferase [Papio anubis]
Length = 510
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVRAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|348504248|ref|XP_003439674.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oreochromis
niloticus]
Length = 498
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 104/187 (55%), Gaps = 1/187 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N N+T+ L ED R ++ +A +++ LP ++ S Q++GLP +G+
Sbjct: 150 NSNLTDALSLLAENAELSNEDGRGVAFRRAAALLKALPTQVISMSQLRGLPCLGEHSLRV 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
I++++ G S++E ++ ++ + + + ++G+G TA + +G L+ L++ +L
Sbjct: 210 IKDVLENGVSSEVESTKQSKRYKALKILTGIFGVGAKTADRWIREGIYNLEQLRDSGQTL 269
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+Q+ GL+++DD+ + + E + + ++QKA VLP + G +RRGK + D+D
Sbjct: 270 NRAQKAGLEHYDDLNEPVTKAEADAIGEIVQKAVNSVLPGSEVALTGGFRRGKLTGHDVD 329
Query: 389 VVIMHPD 395
+I HP+
Sbjct: 330 FLITHPE 336
>gi|74136105|ref|NP_001027915.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
gi|38603668|dbj|BAD02935.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
Length = 498
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 2/186 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y D R ++ +A V++ LP + S ++ LP +G +
Sbjct: 152 NYNVVFTDAFEVLAECYEFNQMDGRCLAFRRAASVLKSLPRGLSSLEETHSLPCLGGHAK 211
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I EI+ G+ +E DE+ +T+ LF V+G+GP TA+K Y G R+LD + + S
Sbjct: 212 AIIGEILQHGRAFDVEKVLSDERYQTLKLFTSVYGVGPKTAEKWYRSGLRSLDHILADQS 271
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L H Q+ G ++ DI + + E + + + + + + P+ ++ G +RRGK
Sbjct: 272 IQLNHMQQNGFLHYGDISRAVSKAEARALTKAIGETVQAITPDALLALTGGFRRGKEFGH 331
Query: 386 DLDVVI 391
D+D++
Sbjct: 332 DVDIIF 337
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL-----AMDLEALLQQV 73
F +R++LVE + R Q G VEE LS +VTHV+ A L A L++
Sbjct: 29 FRDVRLYLVEMKMGRSRRSFLTQLARSKGFMVEEVLSNRVTHVVSESSQAPVLWAWLKER 88
Query: 74 SKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLD-----PEGENIADRVLSQIQGN 128
+ Q L V+ W DS+R V+ + + D PEG A V SQ
Sbjct: 89 APQDLPNMH--VVNITWFTDSMRESRPVAVETRHLIQDTLPAIPEGGAPAAEV-SQYACQ 145
Query: 129 GNTSSD 134
T++D
Sbjct: 146 RRTTTD 151
>gi|225684227|gb|EEH22511.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb03]
Length = 679
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 292
+Y AI I P+ ++SA +V LPG + E + G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSDGTLESANQLDADPVLS 396
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 350 EVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKASCGDLDVVIMH 393
EVE + + + + V PE I+ GG YRRGK CGD+D+++ H
Sbjct: 457 EVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKERCGDVDLILTH 509
>gi|361129501|gb|EHL01407.1| putative DNA polymerase family X C2F7.06c [Glarea lozoyensis 74030]
Length = 357
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 228 GEDRRSFSYY-----KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
GE+ +++Y AI I P + SA ++ LP G QE TG + ++
Sbjct: 10 GEEEAGYAFYTRSYEAAIAAIAAYPHTLTSALELLKLPHCGSRFAALFQEWKETGMIKEV 69
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFD 340
E + DEK + + + ++G+G TA++ Y KG+R +DD+ DSLT Q +G K++
Sbjct: 70 EDLKYDEKFQAMDVLTGIFGVGDKTAREFYAKGYRDIDDIIEYAWDSLTTEQMIGTKFYY 129
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPD 395
D + RIP EVE++ + +V P +++CGG YR+GK CGD+D+V+ + D
Sbjct: 130 DFQQRIPLPEVEKIANHVLSEARKVYPGFEMVICGG-YRKGKPDCGDVDIVLSNRD 184
>gi|350636864|gb|EHA25222.1| hypothetical protein ASPNIDRAFT_42418 [Aspergillus niger ATCC 1015]
Length = 676
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 22/225 (9%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 303
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 304 GPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 361 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P + II+ G YRRGK CGD+D+++ HPD
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHPD 490
>gi|226293847|gb|EEH49267.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 687
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 292
+Y AI I P+ ++SA +V LPG + E + G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSDGTLESANQLDTDPVLS 396
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 350 EVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKASCGDLDVVIMH 393
EVE + + + + V PE I+ GG YRRGK CGD+D+++ H
Sbjct: 457 EVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKERCGDVDLILTH 509
>gi|62414130|ref|NP_001014817.1| DNA nucleotidylexotransferase [Danio rerio]
gi|46369889|gb|AAS89780.1| terminal deoxynucleotidyl transferase [Danio rerio]
Length = 487
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 158/379 (41%), Gaps = 64/379 (16%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F+ + +FLVEK + R G V++ LS VTHV++ L A Q L
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVSEGLSA-------QDL 75
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 138
+ WLED G + E + VL N + ++ S+
Sbjct: 76 ---------WLWLEDQ---GFQ--------------ETHSKHVL-----NISWFTESMSA 104
Query: 139 HRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHIT 198
R T +++ A+ + V +A E+ SP + + T +H
Sbjct: 105 GRPLPVEDTHCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH--- 151
Query: 199 DPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 258
NK TE L G + +A V++ LP + S ++
Sbjct: 152 -----------NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEALR 200
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
LP +G + + ++EI G S++E + D++ RT+ LF V+G+GP TA+ + +G +T
Sbjct: 201 LPCLGDNSRAVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCRGLKT 260
Query: 319 LDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
+ + E S L Q G +++DI + R E ++ ++++A + P + G
Sbjct: 261 FEQVLTEPSIRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTITGG 320
Query: 377 YRRGKASCGDLDVVIMHPD 395
+RRGK D+D +I P+
Sbjct: 321 FRRGKEFGHDVDFIIKAPE 339
>gi|451850321|gb|EMD63623.1| hypothetical protein COCSADRAFT_37397 [Cochliobolus sativus ND90Pr]
Length = 706
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 5/182 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 348 KKIRTNRVLIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 407
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 334
K+ ++E +E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 408 KIKEVEDYENDEAMKVLRTFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 467
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G KY+++ + I R EVE + +++ ++ E I + G YRRGK+ GD+D+++ H
Sbjct: 468 GAKYYEEFQEPIQRAEVEHIVAVVRDHAAKLRDERISVTIVGGYRRGKSVSGDVDIIVSH 527
Query: 394 PD 395
P+
Sbjct: 528 PE 529
>gi|40218593|gb|AAG53984.2| terminal deoxynucleotidyl transferase [Ginglymostoma cirratum]
Length = 522
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A +++ LP+ I + GLP G + I+EI+ G SK++ DEK +
Sbjct: 187 AFARATSLLKSLPYTISKMAALDGLPCFGDQTRAIIEEILEDGVSSKVDDLLCDEKYKAR 246
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G TA K Y +G RTL+ +K L T Q+ G Y++DI + R E E
Sbjct: 247 KLFTSVFGVGLKTADKWYGQGFRTLEAVKASKDLKFTKMQKAGFLYYEDINNAVTRPEAE 306
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ ++++ P+ I+ G +RRGK + D+D +I P+
Sbjct: 307 AVAQIIETIVHNYAPDAIVTLTGGFRRGKETGHDVDFLISCPE 349
>gi|401889239|gb|EJT53177.1| hypothetical protein A1Q1_07852 [Trichosporon asahii var. asahii
CBS 2479]
Length = 821
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 13/157 (8%)
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVT-----------TGKLSKLEHFEKDEKVRTIS 295
P +I+S Q++ L +G+SM ++ +V+ TG +L +FE ++ RTI+
Sbjct: 501 PEQIKSGSQIRHLRFVGESMAKRVRLMVSIRLMRQIDEILTGAKGRL-YFEDTDQARTIA 559
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
F V+G+G A +LY +G R+++DL +D LT Q++G+K +DD+ RIPR E Q+
Sbjct: 560 KFQNVYGVGSRCAHELYSRGARSIEDLATKDFGLTVGQKIGVKLYDDLCARIPREECRQL 619
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+++ +V + GSYRRG+A+ GD+D++I
Sbjct: 620 FEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDIDILI 656
>gi|358369850|dbj|GAA86463.1| terminal deoxynucleotidyl transferase [Aspergillus kawachii IFO
4308]
Length = 676
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSTP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 303
P + ++ LPG + + E TG LS + D ++ ++ F +WG+
Sbjct: 328 YPHEFRRPSEILTLPGCDTKIANLFYEYQQSPTGTLSAATLLDTDPTLQILNNFYNIWGV 387
Query: 304 GPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA++ Y H T LDD+ ++LT Q++GLKY+D+ T IPR EVEQ+ + +
Sbjct: 388 GAKTAREFYYYRHWTDLDDIIEHGWNNLTRVQQIGLKYYDEFLTGIPRPEVEQIATTVTQ 447
Query: 361 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P + II+ G YRRGK CGD+D+++ HPD
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHPD 490
>gi|321459302|gb|EFX70357.1| hypothetical protein DAPPUDRAFT_300508 [Daphnia pulex]
Length = 538
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 13/164 (7%)
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQ-EIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
I+ LPFK ++ Q+KG+ G+G + +I+ +G ++E D+K ++ +F +V+
Sbjct: 205 IKCLPFKATNSQQLKGIKGLGNGHALRVATQILESGYCPEVEEKRNDKKFLSLQIFCKVY 264
Query: 302 GIGPATAQKLYEKGHRTLDDLK--------NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G+GP+ A+K Y +G RT++D+K N D + H G+ ++DD+ + R E E
Sbjct: 265 GVGPSIAEKWYAQGLRTVEDVKKLDQQDIANNDMIAH----GVAFYDDLNRPLLRAEAEN 320
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + + +LP V+ G + RGK+S DLDV+ +P+R+
Sbjct: 321 TYKYITDLAKLILPSVVTSMNGGFLRGKSSGHDLDVLFSYPERE 364
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA---LLQQVSKQHLAR 80
++++ + RRL+I + + +MG T+ ++ VTHVL+ +LE +L+
Sbjct: 35 IYILPDCIGPRRLEIMEKSVDKMGLTLSTRMIANVTHVLS-ELETKEDVLESKEFSIFKS 93
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ 126
+KG ++ +WL + LR VSE + + P E AD V+ ++
Sbjct: 94 WKGYILHAKWLAECLRCHSLVSETGFLLPSIPSHEKKADDVVPHVE 139
>gi|427793003|gb|JAA61953.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 245
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 72/109 (66%)
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
E + +LF ++WG GP+TAQK ++G R+L++L + +L+ Q++GLK+F D ++P
Sbjct: 1 ENLVAQNLFTKIWGAGPSTAQKWVQQGFRSLEELAAKGNLSSQQKIGLKHFHDFLEKMPS 60
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
E + ++KA + P + ++ GSYRRG+A CGD+DV+I HPD K
Sbjct: 61 GEAGLIADTVKKAALSIQPALEVIPCGSYRRGRAMCGDVDVLITHPDGK 109
>gi|73998101|ref|XP_849761.1| PREDICTED: DNA nucleotidylexotransferase isoform 2 [Canis lupus
familiaris]
Length = 510
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NYNNVFTDAFEVLAENYEFRENEVFSLTFMRAASVLKSLPFTIISMKDTEGIPCLGDQVK 223
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ S
Sbjct: 224 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKS 283
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVGAFLPDAFVTMTGGFRRGKKMGH 343
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 344 DVDFLITSP 352
>gi|189206734|ref|XP_001939701.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975794|gb|EDU42420.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 661
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 5/217 (2%)
Query: 184 STASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
S A P++ + + + P + N++ E K+ + +D +Y I
Sbjct: 268 SDIPAPPEWVKNCVKYACQRFTPANGPNEDFLEQLKKIRTARTLIDDDIGVRAYSTIIAS 327
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
I P+K+ ++ LPG + E TGK+ +E +E DE ++ + F +WG
Sbjct: 328 IAAYPYKLSHPRELARLPGCDEKTVALFVEWKNTGKIQAVEDYENDEAMKVLRCFYNIWG 387
Query: 303 IGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+G T + Y H + LDD+ + L Q++G+KY+++ IPR EVE++ +++
Sbjct: 388 VGAKTTRHFYYNNHWKELDDIVEYGWNDLKRVQQIGVKYYEEFLLPIPRDEVERIAAVVR 447
Query: 360 KAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + + V + G YRRGK GD+D+++ HPD
Sbjct: 448 EHAVRLRDDRVTVTLVGGYRRGKTESGDVDMIVSHPD 484
>gi|115443076|ref|XP_001218345.1| high-affinity nickel transport protein [Aspergillus terreus
NIH2624]
gi|114188214|gb|EAU29914.1| high-affinity nickel transport protein [Aspergillus terreus
NIH2624]
Length = 1044
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT--TGKLSKLEHFEKDEKVR 292
+Y +I I P++ +V LPG + + E T L+ + D ++R
Sbjct: 688 AYSTSIAAIAAYPYEFRRPSEVLTLPGCDAKIAHLLAEYQASETRTLAAAKALTTDPELR 747
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 349
+ F ++WG+GP TA++ Y +G R LDD+ L+ Q++G+KY+D+ + IPR
Sbjct: 748 VLHEFSQIWGVGPKTAREFYYARGWRDLDDIVEHGWAGLSRVQQIGVKYYDEFRRGIPRG 807
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPD 395
EVE + R++ + V PE IL GG YRRGK GD+D+++ H D
Sbjct: 808 EVEAIARVVHRHANAVRPEAAYDGRGVECILVGG-YRRGKEISGDVDLILTHRD 860
>gi|357289932|gb|AET73245.1| DNA ligase [Phaeocystis globosa virus 12T]
gi|357292352|gb|AET73688.1| DNA ligase [Phaeocystis globosa virus 14T]
Length = 1093
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 27/183 (14%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--------K 287
Y +A+ I+ L ++ SAD +KGL GIGK++ D + E + TG++ LE + +
Sbjct: 68 YREAVEQIKNLNGEVNSADDIKGLSGIGKAITDKLTEFINTGQVKNLEKLKSEYNTEDYE 127
Query: 288 DEKVRTI--SLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDS----------LTHSQ 332
+EK++ +F ++ GIG A A+KL + G T+++L KNE+ L +Q
Sbjct: 128 NEKIKQAKKDIFLQIHGIGDAAAEKLIDLGITTIEELKARKNEEIPGKGTKKLKLLNATQ 187
Query: 333 RLGLKYFDDIKTRIPRHEVEQ----MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ GL+Y+++I +IPR E+E+ +E+L +A + + GSYRRGK GD+D
Sbjct: 188 QKGLEYYEEILEKIPRAEIEEYKTTIEKLFNEATDNNTEDNKFEIVGSYRRGKQESGDID 247
Query: 389 VVI 391
++I
Sbjct: 248 III 250
>gi|340053717|emb|CCC48010.1| putative mitochondrial DNA polymerase beta [Trypanosoma vivax Y486]
Length = 407
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 9/198 (4%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGL 259
+ L + PD +NI IF ++ + ALGE + SY +A+ ++ L + + + ++
Sbjct: 5 TFLRSAPDNRENIIRIFMEMAELNNALGEKYKVHSYNRAVRSLKTHLDLPLRTVEDLERF 64
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318
PG G + +EI+TTGKL +LE K K+R I ++ G GP A L+++ G T
Sbjct: 65 PGFGAKLVKKAEEIITTGKLEELEKKTKP-KLRAIQELTQIHGFGPRAAASLFDREGIFT 123
Query: 319 LDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILC 373
+++L + LT QR+G++YF DI +IP HE E L++ L I +C
Sbjct: 124 VEELIEKADRIQLTDQQRVGVRYFHDINEKIPMHESVLHENFLRECSLRRLGSDYEIQIC 183
Query: 374 GGSYRRGKASCGDLDVVI 391
GSYRR GD+D ++
Sbjct: 184 -GSYRRRHPFSGDIDAIL 200
>gi|353236694|emb|CCA68683.1| related to DNA polymerase Tdt-N [Piriformospora indica DSM 11827]
Length = 531
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 20/252 (7%)
Query: 161 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLL------YNPPDLNKNIT 214
V + L + P S S L T ++ + S D + L P + KN +
Sbjct: 125 VAVDGLVPPASVPKPSRSPKKGLGTKNSPIELSDSESFDAAALPRYCCQRQTPLVCKN-S 183
Query: 215 EIFGKLINIY--RAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
E+ +L I R L G+D ++ ++ +AI I+ P KIE+ ++++ LP +GKS + +
Sbjct: 184 ELIAQLAMIRQNRWLEGDDMKALAHSRAIASIKAFPNKIETIEEIEKLPYVGKSTLNRVS 243
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-------- 323
E + G + + H EK+E+ + +S F V+GIGP A+ + +T DL+
Sbjct: 244 EFLGRGFIEEARHLEKNERFQVLSDFTTVYGIGPVKARAFLHQNIKTFGDLERYYRRQLM 303
Query: 324 -NEDSLTHSQRLG-LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
+D+ L L +D + +I R EVE++ R++ E + P I G YRRGK
Sbjct: 304 SGKDTENAQGMLNSLAAREDFRVKISRAEVEEVARIIANELEIIQPGFIHTITGGYRRGK 363
Query: 382 ASCGDLDVVIMH 393
D+D+V H
Sbjct: 364 EESNDIDIVFSH 375
>gi|392591052|gb|EIW80380.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 596
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 29/206 (14%)
Query: 219 KLINIYRAL-GEDRRSFSYYKAIPVIEKLP--FKIESAD-QVKGLPGIGKSMQDHIQEIV 274
K+I + R L GE+R SY +AI +I+ P +E D +V+ LP +G + I+E V
Sbjct: 241 KIIQLSRKLEGEERSMLSYQRAIAMIKSYPHIITLERLDNEVEDLPYLGTKLVAMIEEYV 300
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------------ 322
T GK+S+ E + + + +S F ++GIGP T ++LY+ G RTL++L
Sbjct: 301 TLGKISEAESIRESSRFQALSAFSRIYGIGPHTGRRLYDLGLRTLEELDRYYEVTPGSTD 360
Query: 323 ------------KNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
NE++ L + ++ L D+ I RHE E++ ++L V
Sbjct: 361 GSALSSLELYSKANEETVLEETIKVALALRHDLCQTISRHEAERIGQILDSELAHVEQGC 420
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPD 395
L G YRRGK D+D++I HP+
Sbjct: 421 RTLLVGGYRRGKVQGNDVDILITHPN 446
>gi|327280070|ref|XP_003224777.1| PREDICTED: DNA nucleotidylexotransferase-like [Anolis carolinensis]
Length = 527
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 110/212 (51%), Gaps = 4/212 (1%)
Query: 185 TASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE 244
T+ S D S + N + NK T+ F L Y ++ +A V++
Sbjct: 163 TSPLSTDIVSQYACQRRTTLN--NYNKKYTDAFEILAENYEMRENAGACLAFRRAASVLK 220
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
LPF I ++ ++GLP +G+ ++ I++I+ G+ K+E +EK R+ LF V+G+
Sbjct: 221 FLPFAIVRSNDIEGLPWMGEQVKGIIEDILEEGQSPKVEAVLNNEKYRSFKLFTSVFGVA 280
Query: 305 PATAQKLYEKGHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
T++K + G R L+D+K N++ LT Q+ GL++++D+ + + + E + +++
Sbjct: 281 LKTSEKWFMMGLRNLEDVKLNQNLQLTRMQKAGLQHYEDLISYVSKAEADSTSLMVKDTV 340
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ P ++ G +RRGK D+D +I P
Sbjct: 341 WKFSPSALVTLTGGFRRGKKMGHDVDFLITVP 372
>gi|145246538|ref|XP_001395518.1| terminal deoxynucleotidyl transferase [Aspergillus niger CBS
513.88]
gi|134080236|emb|CAK97139.1| unnamed protein product [Aspergillus niger]
Length = 676
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 303
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 304 GPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 361 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHP 394
V P + II+ G YRRGK CGD+D+++ HP
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHP 489
>gi|378731420|gb|EHY57879.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 749
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 21/181 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG------KLSKLEHFEKD 288
+Y +I I P+ I A+++ LPG + + E +G + + E D
Sbjct: 334 AYSSSIASIAAYPYLIRHAEEINRLPGCNEKIAMLWNEWYHSGPEDSERSIQTVTDLEND 393
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTR 345
++ + LF +WG+GP TA+K Y E G + L+D+ +L Q++G+KY+D+ + +
Sbjct: 394 IDLQHLRLFWNIWGVGPETARKFYFEHGWQDLNDVVEFGWSTLNRVQQIGVKYYDEFQEK 453
Query: 346 IPRHEVEQMERLLQKAGEEVL---------PEVI--ILCGGSYRRGKASCGDLDVVIMHP 394
IPR EVEQ+ ++ + VL PE + I+ GG YRRGK + GD+DVV+ H
Sbjct: 454 IPRAEVEQIGEVIHRHARGVLDIKSSQYGTPEDVECIIVGG-YRRGKTASGDVDVVLSHR 512
Query: 395 D 395
D
Sbjct: 513 D 513
>gi|406698945|gb|EKD02166.1| hypothetical protein A1Q2_03528 [Trichosporon asahii var. asahii
CBS 8904]
Length = 919
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 104/184 (56%), Gaps = 18/184 (9%)
Query: 210 NKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ + + F KL IY+A G++ S Y P +I+S Q++ L +SM+
Sbjct: 521 NEALAKEFDKLHAIYKATPGKNEFSILQYS-----RGHPEQIKSGSQIRHL----RSMK- 570
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-S 327
+ TG +L +FE ++ RTI+ F V+G+G A +LY +G R+++DL +D
Sbjct: 571 -----LLTGAKGRL-YFEDTDQARTIAKFQNVYGVGSRCAHELYSRGARSIEDLATKDFG 624
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q++G+K +DD+ RIPR E Q+ +++ +V + GSYRRG+A+ GD+
Sbjct: 625 LTVGQKIGVKLYDDLCARIPREECRQLFEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDI 684
Query: 388 DVVI 391
D++I
Sbjct: 685 DILI 688
>gi|139001490|dbj|BAF51677.1| deoxynucleotidyltransferase, terminal [Microcebus murinus]
Length = 511
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P +G +
Sbjct: 163 NCNHIFTDAFEILAENYEFRENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLGDKAK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSHVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|336390911|dbj|BAK40154.1| DNA polymerase lambda [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 345
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I E L+ Y ALG+ R Y KAI + K I S +Q + LP +G+ + +
Sbjct: 176 NEFIIEKLKVLLEEYTALGDKWRVMGYKKAITALSKCKEIIRSTEQARKLPHVGERLAEK 235
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I EI T +L +L++ D +V T+ F ++ G+GP A LY KG R++++L+
Sbjct: 236 IGEIAETRRLRRLDYV--DNRVETLKAFCDIHGVGPVVAADLYAKGFRSIEELRTYSDTP 293
Query: 327 ---------SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+L+ QR+GLK+ +D + RIPR EV + L+++ + E
Sbjct: 294 ESCGPSAKVTLSRPQRIGLKHVEDFRQRIPREEVSVIAGLVREVCHRFINE 344
>gi|190339956|gb|AAI63775.1| Dntt protein [Danio rerio]
Length = 486
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 157/379 (41%), Gaps = 64/379 (16%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F+ + +FLVEK + R G V++ LS VTHV++ L A Q L
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVSEGLSA-------QDL 75
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 138
+ WLED G + E + VL N + ++ S+
Sbjct: 76 ---------WLWLEDQ---GFQ--------------ETHSKHVL-----NISWFTESMSA 104
Query: 139 HRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHIT 198
R T +++ A+ + V +A E+ SP + + T +H
Sbjct: 105 GRPLPVEDTHCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH--- 151
Query: 199 DPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 258
NK TE L G + +A V++ LP + S ++
Sbjct: 152 -----------NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEALR 200
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
LP +G + + ++EI G S++E + D++ RT+ LF V+G+GP TA+ + + RT
Sbjct: 201 LPCLGDNSRAVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCRELRT 260
Query: 319 LDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
+ + E S L Q G +++DI + R E ++ ++++A + P + G
Sbjct: 261 FEQVLTEPSIRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTITGG 320
Query: 377 YRRGKASCGDLDVVIMHPD 395
+RRGK D+D +I P+
Sbjct: 321 FRRGKEFGHDVDFIIKAPE 339
>gi|225559373|gb|EEH07656.1| high-affinity nickel transporter [Ajellomyces capsulatus G186AR]
Length = 694
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S +V LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEVSALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y H RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYHWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDER 520
>gi|139001476|dbj|BAF51673.1| deoxynucleotidyltransferase, terminal [Lemur catta]
Length = 511
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHIFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSNIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTQMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|154332625|ref|XP_001562129.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059577|emb|CAM37159.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 376
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 8/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K GIG +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGIGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 189 HPFSGDVDAIL 199
>gi|348588114|ref|XP_003479812.1| PREDICTED: LOW QUALITY PROTEIN: DNA nucleotidylexotransferase-like
[Cavia porcellus]
Length = 510
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +A V++ LPF I S +G+P +G ++ I+EI+ G+ S++ DE+ ++
Sbjct: 190 TYIRAASVLKSLPFTIISMKDTEGIPCLGDRVKCIIEEIIEDGESSEVNAVLNDERYKSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L+ +K++ SL T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLNKIKSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ L+++A LP I G +RRGK D+D +I P+
Sbjct: 310 AVSTLVKEAVWAFLPGAFISMTGGFRRGKEIGHDVDFLITSPE 352
>gi|347841318|emb|CCD55890.1| similar to terminal deoxynucleotidyl transferase [Botryotinia
fuckeliana]
Length = 683
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 39/328 (11%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD-----------RVLSQIQGNGNTSS 133
V++ W DS+R G + D Y I EG + + R + + G+ N
Sbjct: 177 VLKIDWYFDSIREGMLLPIDKYLIY---EGRRVVEPPKFLPSDLLTRAAADLGGSPNPKY 233
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
++ K T F ES T+ + SP E L S +P
Sbjct: 234 GPHYRQQQSRKPLTRPA--FLTES-----TSEHDDPSYSPPVPEYLKTIYSCERPTP--- 283
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+T P N P +N+ T +L++ G+ +Y +I I P+ + S
Sbjct: 284 ---LTSP----NDPFINQLKTIKLKRLLD-----GDPIGVRAYSTSIASIAAYPYPLHSP 331
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
+++ LPG + + + + + + TG ++ FE++ +++ + F +WG+ TA++ +
Sbjct: 332 NELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVLKTFYNIWGVADITAREFHD 391
Query: 313 EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
++ + LDD+ E + L Q++G+KY++++ T IPR E E + ++ + P
Sbjct: 392 QREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCETEAIGSIILSEARRIDPGFQ 451
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
++ G YRRGK GD+D+++ H D KR
Sbjct: 452 MVIVGGYRRGKLESGDVDIMLTHRDEKR 479
>gi|449539952|gb|EMD30953.1| hypothetical protein CERSUDRAFT_163631, partial [Ceriporiopsis
subvermispora B]
Length = 184
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 328
EI++TG+L +LE FEK E TI+LF ++G+G TA+K Y +G RTL DL K L
Sbjct: 2 EIISTGELRRLE-FEKTEDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGKGGVQL 60
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+H Q++ +KY+ DI +R+PR E ++ L + P++ I GSYRR + CGD+D
Sbjct: 61 SHVQQIVVKYYADINSRMPRAEAAEILAL------RLDPQLFIAILGSYRRCEPDCGDID 114
Query: 389 VVI 391
++I
Sbjct: 115 ILI 117
>gi|150392479|sp|A4PCD4.1|TDT_EULMA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|139001468|dbj|BAF51669.1| deoxynucleotidyltransferase, terminal [Eulemur macaco]
Length = 511
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|19113889|ref|NP_592977.1| DNA polymerase X family [Schizosaccharomyces pombe 972h-]
gi|1175369|sp|Q09693.1|DPO4_SCHPO RecName: Full=DNA polymerase type-X family protein pol4
gi|1052789|emb|CAA90493.1| DNA polymerase X family [Schizosaccharomyces pombe]
Length = 506
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE R+ +Y AI I+ P I+SA+Q++ +PG G + +E +TG L + E F+K
Sbjct: 197 GESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKIVHLWKEFASTGTLKEAEEFQK 256
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDI-KTR 345
D + + LF ++G+G + A + Y+KG RT++ + K++DS T ++GL++++D KT
Sbjct: 257 DPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTV 316
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
E E ++ + + + + ++ G +RRGK D+D+V+
Sbjct: 317 TIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVGADVDMVL 360
>gi|71666008|ref|XP_819968.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70885292|gb|EAN98117.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
gi|407832614|gb|EKF98512.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDVDAIL 200
>gi|71650066|ref|XP_813738.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70878652|gb|EAN91887.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDVDAIL 200
>gi|407917656|gb|EKG10960.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 675
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%)
Query: 205 NPPDLNKNITEIFGKL--INIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
NPP+ G+L I + R L G++ +Y AI + P+++ ++ LPG
Sbjct: 296 NPPN-----AAFIGQLKEIRLTRTLTGDEVGVRAYSTAIAALAAYPYRLSHPKEILRLPG 350
Query: 262 IGKSMQDHIQEIVTTG---KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHR 317
+ + E G + + DE + + +F ++WG+G TA+ L++KG R
Sbjct: 351 CDTKIANLWIEWKNAGDEATIPAVAAARADETLAILRIFYDIWGVGATTARDFLFDKGWR 410
Query: 318 TLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIIL 372
LDD+ SLT Q++G+KY+DD + IPR EVE++ ++ V E + L
Sbjct: 411 DLDDVVEYGWTSSLTRVQQIGVKYYDDFRHGIPRREVERIATVIHAHAVRVRDEGATVAL 470
Query: 373 CGGSYRRGKASCGDLDVVIMHPD 395
GG YRRGK + GD+D+++ H D
Sbjct: 471 VGG-YRRGKDAPGDVDLIVSHRD 492
>gi|407395989|gb|EKF27316.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi
marinkellei]
Length = 403
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYNRAVHSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLGSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDVDAIL 200
>gi|403259830|ref|XP_003922400.1| PREDICTED: DNA nucleotidylexotransferase [Saimiri boliviensis
boliviensis]
Length = 509
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NFNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++E S
Sbjct: 222 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSEKS 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTRMQQAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 341
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 342 DVDFLITSP 350
>gi|384244518|gb|EIE18020.1| hypothetical protein COCSUDRAFT_60646 [Coccomyxa subellipsoidea
C-169]
Length = 702
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
K++ + +VT KL EK EK++ I F EVWG G ATA++ Y G R+L+D+
Sbjct: 259 KAVVESTSALVTADDCEKLGIGEKSIEKLQEI--FMEVWGTGEATAERWYRDGCRSLEDV 316
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-----LPEV-IILCG-- 374
+ L+ QR G+KYF+D K RIPR EV M + A EEV LP+ ++ C
Sbjct: 317 QGRSDLSMQQRTGMKYFEDFKQRIPRSEVAAMGATVCDAAEEVLDCSNLPDGDLLFCSVL 376
Query: 375 GSYRRGKASCGDLDVVIMHP 394
GSY RGK GD+D++I P
Sbjct: 377 GSYTRGKPLTGDVDMLIAPP 396
>gi|355712674|gb|AES04428.1| polymerase , mu [Mustela putorius furo]
Length = 330
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 4/197 (2%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 259
P+ L +P N + +E L G + R S+ +A V++ LP ++ + Q++GL
Sbjct: 115 PTPLTHP---NTSFSEALEVLAEAAGFEGSEGRFLSFRRAAAVLKALPSQVTALSQLQGL 171
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
P G+ +QE++ G ++E + E+ +T+ LF ++G+G TA + Y G RTL
Sbjct: 172 PNFGERSCRVVQELLEHGVCEEVERVRRSERYQTMKLFTGIFGVGVKTADRWYRDGLRTL 231
Query: 320 DDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
D L+ + Q+ GL+++ ++ + R E E +++ ++ A ++LP + G +R
Sbjct: 232 DSLQEQLQRLTQQQRAGLQHYRELSIPVQRPEAEALQQEVEAAAVDILPGATVTLVGGFR 291
Query: 379 RGKASCGDLDVVIMHPD 395
RGK D+D+++ HP
Sbjct: 292 RGKLHGHDVDLLLSHPQ 308
>gi|412990966|emb|CCO18338.1| DNA polymerase lambda [Bathycoccus prasinos]
Length = 739
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 28/244 (11%)
Query: 172 SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 231
+ M S+ N + H + P+ D NK++ ++F Y AL +D
Sbjct: 365 ASMESDVRQNYYHSLENMKKIKKHFMCQPAERVGNQDANKSLIDMFSN----YGALLQDM 420
Query: 232 ---------RSFSYYKAIPVIEKLPFKIESAD-------QVKGLPGIGKSMQDHIQEIVT 275
R +Y K ++E P+++ + +G G+G+SM + ++ V+
Sbjct: 421 YPDNKQQRGRGNAYVKIARLLESTPYELTPNNIDDFIEKNRRGGQGMGESMCNKLKYAVS 480
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKN-------EDS 327
L + E F KD V + V GIG TA K YE+ + ++++DL+ +
Sbjct: 481 FKVLPEYEAFLKDPSVIAVKDMSRVHGIGTKTAYKFYERFNLKSVEDLRALLSSGDPNNI 540
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L + R+ LKY +D++ RIPR E +++ ++++ E ++ + GSYRRGK +CGD+
Sbjct: 541 LKNDMRISLKYLEDLEDRIPREEAKEIGDFVRESVENIVKGAQVEVAGSYRRGKPTCGDV 600
Query: 388 DVVI 391
DV++
Sbjct: 601 DVLV 604
>gi|398405886|ref|XP_003854409.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339474292|gb|EGP89385.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 670
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I + R L D +Y +I + KI + ++ LPG + + E TG
Sbjct: 304 KQIKLGRLLTNDEIGVRAYSTSIAALAAYNHKISNPREILALPGCDHKIANLYVEWQNTG 363
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL--KNEDSLTHSQRL 334
++ +E E ++ ++ ++ F ++WG+G TA+ L Y KG DDL L+ Q++
Sbjct: 364 RIQAVEELESNQDLKILNGFYDIWGVGVTTARDLYYNKGWTDRDDLIEFGWSYLSRVQQI 423
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G+K++D+ IPR EVE + ++++ V + I + G YRRGK +CGD+D+++ H
Sbjct: 424 GVKFYDEFLDLIPRVEVESICEVIREHAVRVRDDGIQTMIVGGYRRGKEACGDVDLILSH 483
Query: 394 PDRKR 398
PD +
Sbjct: 484 PDESK 488
>gi|295659048|ref|XP_002790083.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281985|gb|EEH37551.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 691
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG--KLSKLEHFEKDEKVR 292
+Y AI I P+ ++SA +V LPG + E +G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSGDGTLESANQLDTDPVLS 396
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
++ F + G+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFNNILGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 350 EVEQMERLLQKAGEEVLPEVII---------LCGGSYRRGKASCGDLDVVIMH 393
EVE + + + + V PE + + G YRRGK CGD+D+++ H
Sbjct: 457 EVESIADTVLRHAKLVRPESQVDYNGAAIEGIIVGGYRRGKECCGDVDLILTH 509
>gi|397510136|ref|XP_003825458.1| PREDICTED: DNA nucleotidylexotransferase [Pan paniscus]
Length = 509
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFITMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|342181097|emb|CCC90575.1| putative mitochondrial DNA polymerase beta [Trypanosoma congolense
IL3000]
Length = 408
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 9/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G +
Sbjct: 12 DNRENIIRIFSEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGFGSKL 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 322
+EI+TTGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 72 LKKAEEIITTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAATLFDREGIFTVEELIEK 130
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 380
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESVLHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDIDAIL 200
>gi|336372511|gb|EGO00850.1| hypothetical protein SERLA73DRAFT_50337 [Serpula lacrymans var.
lacrymans S7.3]
Length = 584
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 152/361 (42%), Gaps = 60/361 (16%)
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V A+ ++ L++ LA+ K +++ QWLEDS++ G + P G+ A
Sbjct: 105 VTAVHMKQRLERHVDWELAKSK-AIVTPQWLEDSVKYGRPM----------PCGDYAALN 153
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
VL + + E R S + + S+ + + E P LT
Sbjct: 154 VL-------HDETVHECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLT 206
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
+T S + S L P N+ + + K+ GE+R SY +AI
Sbjct: 207 HT----------SRYCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAI 253
Query: 241 PVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
V P I ++ ++ LP +G+ + ++E + TG++++ + + + +S F
Sbjct: 254 SV-SPFPHVITHSNLKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAF 312
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLK-------------------------NEDSLTHSQ 332
+ GIGP TA+KLY G RTL+DL+ +E + S
Sbjct: 313 TTIHGIGPHTARKLYNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSI 372
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++ L D IPR EVE+M R++ E++ + G YRRGK D+D+VI
Sbjct: 373 KVALALRHDFSQTIPRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVIS 432
Query: 393 H 393
H
Sbjct: 433 H 433
>gi|40037389|gb|AAR37396.1| terminal deoxynucleotidyl transferase [Raja eglanteria]
Length = 525
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 229 EDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
E+ SF +Y +A V++ LP+ I + ++GLP IG + I+E++ G SK+E
Sbjct: 182 ENAGSFVAYSRATSVLKSLPYPITGMNDLEGLPCIGDQTRVIIEELLEEGVCSKVESLLC 241
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTR 345
DEK + LF V+G+G TA K Y G RTL+++K +T + Q+ G Y++DI
Sbjct: 242 DEKYKARKLFTSVFGVGVKTADKWYGLGFRTLEEIKARKDITFTKMQKAGFLYYEDILQA 301
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ + E E + +++ + P+ + G +RRGK D+D++I
Sbjct: 302 VKKSEAEAVIQIIGDIVGQCAPDAKVTLTGGFRRGKEVGHDVDLLI 347
>gi|229463112|gb|ACQ66108.1| DNA polymerase beta [Trypanosoma cruzi]
Length = 403
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I G+YRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGTYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDVDAIL 200
>gi|358056929|dbj|GAA97279.1| hypothetical protein E5Q_03957 [Mixia osmundae IAM 14324]
Length = 735
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 7/192 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N++I ++ + + Y +R KA + + +I++ D+ L G+G+S
Sbjct: 406 NEDICQVLDGIHDAYDPKDTFQR-MGIRKAQSALRRSSVRIDTFDKAFALKGVGESNASK 464
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I EI TG +L F + E T ++ +++G+G A+ Y+ G RTLDDL+
Sbjct: 465 IVEIARTGNHRRLTIFAR-EGQETKAMLNKIYGVGFRIAENWYKAGVRTLDDLRTNPLRY 523
Query: 327 --SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
L Q+LGL+Y+D++ R+ R E Q+ +Q V + GSYRRG+ +C
Sbjct: 524 GIKLNEGQQLGLQYYDELNQRMSRSEATQLYETIQNTCRRVDLRTQVHLMGSYRRGQPTC 583
Query: 385 GDLDVVIMHPDR 396
GD+D+++ R
Sbjct: 584 GDIDILVTRDTR 595
>gi|348541103|ref|XP_003458026.1| PREDICTED: DNA nucleotidylexotransferase-like [Oreochromis
niloticus]
Length = 500
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK T+ F L + + ++ +A V++ LP+ +++ + LP +G+
Sbjct: 156 NKIFTDAFEVLAESHEFNDMEGPCLAFRRAASVLKSLPWTVQNLRVTEDLPCLGEHSMCV 215
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I+EI+ G+ ++E DE+ + + LF V+G+GP TA+K Y +G R+ D+ E S
Sbjct: 216 IEEILQHGRSFEVEKILSDERYQILKLFTSVFGVGPKTAEKWYRRGLRSFSDVLAEPSIH 275
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L Q+ G ++ DI + + E + + ++ +A + P+ I+ G +RRGK D+
Sbjct: 276 LNRMQQSGFLHYGDISRAVSKAEAQALGNIIDEAVHAITPDAILTLTGGFRRGKDFGHDV 335
Query: 388 DVVIMHP 394
D ++ P
Sbjct: 336 DFIVTTP 342
>gi|72389310|ref|XP_844950.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|34014750|gb|AAQ56191.1| DNA polymerase beta [Trypanosoma brucei]
gi|62358911|gb|AAX79362.1| mitochondrial DNA polymerase beta [Trypanosoma brucei]
gi|70801484|gb|AAZ11391.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328277|emb|CBH11254.1| mitochondrial DNA polymerase beta [Trypanosoma brucei gambiense
DAL972]
Length = 407
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 9/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PGIG +
Sbjct: 12 DNRENIIRIFTEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGIGSKL 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 322
+EI+ TGKL +LE K K++ I ++ G GP A L+++ G T++DL
Sbjct: 72 LKKAEEIIRTGKLDELEKKTKP-KLKAIQELTQIHGFGPRAAATLFDREGIFTVEDLIEK 130
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 380
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESILHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 190 HPFSGDIDAIL 200
>gi|181649|gb|AAA53100.1| terminal DONT [Homo sapiens]
Length = 510
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|426365704|ref|XP_004049908.1| PREDICTED: DNA nucleotidylexotransferase [Gorilla gorilla gorilla]
Length = 509
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|63054850|ref|NP_004079.3| DNA nucleotidylexotransferase isoform 1 [Homo sapiens]
gi|311033533|sp|P04053.3|TDT_HUMAN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
Length = 509
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|57231410|gb|AAW47418.1| DNA polymerase mu [Danio rerio]
Length = 507
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E + +++ A VLP I G +RRGK D+D +I HP+
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPE 345
>gi|15277813|gb|AAH12920.1| Deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|16923263|dbj|BAB72001.1| terminal deoxynucleotidyltransferase [Homo sapiens]
gi|119570364|gb|EAW49979.1| deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|123981124|gb|ABM82391.1| deoxynucleotidyltransferase, terminal [synthetic construct]
gi|123995939|gb|ABM85571.1| deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 509
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|339437|gb|AAA36726.1| terminal transferase [Homo sapiens]
Length = 508
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|63054852|ref|NP_001017520.1| DNA nucleotidylexotransferase isoform 2 [Homo sapiens]
Length = 508
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|55634423|ref|XP_521569.1| PREDICTED: DNA nucleotidylexotransferase isoform 3 [Pan
troglodytes]
Length = 509
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|41053810|ref|NP_956542.1| DNA polymerase mu [Danio rerio]
gi|29126850|gb|AAH47832.1| Polymerase (DNA directed), mu [Danio rerio]
gi|182891836|gb|AAI65363.1| Polm protein [Danio rerio]
Length = 507
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E + +++ A VLP I G +RRGK D+D +I HP+
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPE 345
>gi|146078011|ref|XP_001463420.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|398010897|ref|XP_003858645.1| mitochondrial DNA polymerase beta [Leishmania donovani]
gi|134067505|emb|CAM65784.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|322496854|emb|CBZ31924.1| mitochondrial DNA polymerase beta [Leishmania donovani]
Length = 376
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 8/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 189 HPFSGDVDAIL 199
>gi|431838953|gb|ELK00882.1| DNA nucleotidylexotransferase [Pteropus alecto]
Length = 464
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +F + E R + +Y +A V++ LPF I S +G+P +G +
Sbjct: 144 NCNHVFTDAFEVLAENCEFRENEVFYLVFMRAASVLKSLPFTITSMKDTEGIPCLGDKAK 203
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G R+L ++++ +
Sbjct: 204 YIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRSDKT 263
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y+DD+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 264 LKFTQMQKAGFLYYDDLVSCVTRAEAEAVSVLVKEAVSAFLPDASVTVTGGFRRGKKIGH 323
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 324 DVDFLISSP 332
>gi|6003545|gb|AAF00495.1|AF182167_1 DNA polymerase beta [Leishmania infantum]
Length = 376
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 8/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 189 HPFSGDVDAIL 199
>gi|401416298|ref|XP_003872644.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488868|emb|CBZ24118.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 376
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 8/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 189 HPFSGDVDAIL 199
>gi|358059285|dbj|GAA94973.1| hypothetical protein E5Q_01628 [Mixia osmundae IAM 14324]
Length = 441
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 225 RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 284
R G R + SY AI ++ P ++S + + G G + I E + TG L++ +
Sbjct: 167 RLTGNARSALSYAVAIAALKAYPHMLQSGQEADTIVGTGPKIGALIDEYLRTGTLAEADR 226
Query: 285 FEKDEKVRTISLF-GEVWGIGPATAQKLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYF 339
E+ + + LF V GIGP TA+ L ++ H T DD++ ED + ++ L Y
Sbjct: 227 LERQSRFLALRLFTSSVHGIGPTTARTLVDRFHCLTWDDVERTMREDP--EAPQISLDYR 284
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
D+I +IPR EVE++ L++ +++ P + + G YRRGK D+D++I HP
Sbjct: 285 DEIAQKIPRSEVEKIHDLVKLQLDKLQPGCLTMLTGGYRRGKPFSNDIDILITHP 339
>gi|325088443|gb|EGC41753.1| high-affinity nickel transporter [Ajellomyces capsulatus H88]
Length = 694
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEGYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDER 520
>gi|240282304|gb|EER45807.1| high-affinity nickel transporter [Ajellomyces capsulatus H143]
Length = 694
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDER 520
>gi|157864819|ref|XP_001681118.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
gi|68124412|emb|CAJ02268.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
Length = 376
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 8/191 (4%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGTKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L+ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLRDKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVI 391
GD+D ++
Sbjct: 189 HPFSGDVDAIL 199
>gi|351704887|gb|EHB07806.1| DNA nucleotidylexotransferase [Heterocephalus glaber]
Length = 509
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 12/193 (6%)
Query: 212 NITEIFGKLINIYRALGEDRR-------SFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N IF N + L ED +Y +A V++ LPF I S +G+P +G
Sbjct: 162 NCNYIF---TNAFEILAEDCEFRENEGFYVTYMRAASVLKSLPFTIISMKDTEGIPCLGG 218
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
++ I+EI+ G+ S+++ +E+ ++ LF V+G+G T++K + G R+L +++
Sbjct: 219 RVKCIIEEIIEDGESSEVKAVLNNERYKSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRS 278
Query: 325 EDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ SLT + Q+ G Y++D+ + + R E E + L+++A LP I G +RRGK
Sbjct: 279 DKSLTFTRMQKAGFLYYEDLVSCVTRAEAEAVNMLVKEAVWTFLPGAFISMTGGFRRGKE 338
Query: 383 SCGDLDVVIMHPD 395
D+D +I P+
Sbjct: 339 IGHDVDFLITSPE 351
>gi|315050470|ref|XP_003174609.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311339924|gb|EFQ99126.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 680
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 22/180 (12%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK------D 288
+Y +I + P+K++S ++V LPG ++ I + T K SK E D
Sbjct: 277 AYSTSIASLAAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGTIESTLPLTTD 332
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTR 345
+R I LF +WG+G +A+ Y ++ R LDD+ + D+L+ Q++G+KY+++ T
Sbjct: 333 PALRVIHLFYNIWGVGAKSARDFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTG 392
Query: 346 IPRHEVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRK 397
+PR E E + + + + + V P+ I+ GG YRRGK GD+DV++ H D +
Sbjct: 393 VPREETESIAKTILRHAKLVRPDADFDGKGVECIIVGG-YRRGKEESGDVDVILTHQDER 451
>gi|194374793|dbj|BAG62511.1| unnamed protein product [Homo sapiens]
Length = 232
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 25 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 82
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
L+D++++ SLT Q +GLK++ D R+PR E ++E+ + + V
Sbjct: 83 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVSRCPRAV 129
>gi|400596143|gb|EJP63927.1| condensin complex component SMC1 [Beauveria bassiana ARSEF 2860]
Length = 2316
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESAD--------- 254
NPP+ + I E+ K I R L D+ +Y +I I P+KI+
Sbjct: 1941 NPPN-SSFIDEL--KSIRTIRLLQGDKIGVRAYSTSIASIAAYPYKIQKPQGTAFTLIPE 1997
Query: 255 ------------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
+V LPG G + + QE TG+ ++ + D K+ + +F ++WG
Sbjct: 1998 DLTSMLDSNYLAEVSRLPGCGSKIAELYQEWHATGQTEEMRESKADPKIDVLRIFYDIWG 2057
Query: 303 IGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
+G TA+ Y+KG R LDD+ SL+ Q++G+KY+++ + +I R EV ++ ++
Sbjct: 2058 VGDTTARHFYQKGWRDLDDVVEHGWKSLSRVQQIGVKYYEEFQKKIGRDEVARIADVILD 2117
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+ ++ G YRRG+ GD+DV++ H
Sbjct: 2118 HAHRLDQAYELIVVGGYRRGREENGDVDVILSH 2150
>gi|159129305|gb|EDP54419.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus A1163]
Length = 704
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
E E + + + V P E II+ G YRRGK GD+D+V+ H D
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRD 511
>gi|71001074|ref|XP_755218.1| terminal deoxynucleotidyl transferase [Aspergillus fumigatus Af293]
gi|66852856|gb|EAL93180.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus Af293]
Length = 704
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
E E + + + V P E II+ G YRRGK GD+D+V+ H D
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRD 511
>gi|297687123|ref|XP_002821073.1| PREDICTED: DNA nucleotidylexotransferase [Pongo abelii]
Length = 509
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++ + S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRLDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|353237319|emb|CCA69295.1| hypothetical protein PIIN_03194 [Piriformospora indica DSM 11827]
Length = 400
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 22/205 (10%)
Query: 205 NPPDLNKNITEIFGKLINIY--RALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGL 259
NP D+N + +L N Y A+G +R + ++ +A+ I +I+S + V L
Sbjct: 35 NPDDVN---YPLLNRLYNEYLEYAVGPERNVYKLKAFSQAMKAIASKSSRIQSLEDVAEL 91
Query: 260 PGIGKSMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
PGIG ++ I+E + + ++ + + E + +F + GIGP A+ L E
Sbjct: 92 PGIGTGIRRRIEEYLLSEAEGGSNDITSKKSANQKEMLEACKVFQRISGIGPKKARVLAE 151
Query: 314 KGHRTLDDLKNE----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
+G R+LDDL N+ + L + + GL+Y I RI R +++ + + KA LPE
Sbjct: 152 QGFRSLDDLLNDKKTFERLPKAIQTGLRYNSKIDQRIQRDQIDTLSTRIIKA----LPEF 207
Query: 370 IILCGGSYRRGKASCGDLDVVIMHP 394
+ GSYRRG S D+D+++ HP
Sbjct: 208 EVYVTGSYRRGAPSSSDIDILLFHP 232
>gi|332212412|ref|XP_003255313.1| PREDICTED: DNA nucleotidylexotransferase [Nomascus leucogenys]
Length = 509
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G +
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVAFMRAASVLKSLPFTIISMKDTEGIPCLGSKEK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDASITMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|302681029|ref|XP_003030196.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
gi|300103887|gb|EFI95293.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
Length = 562
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+N+ +I R L +DR S SY AI V + + V LP IGK M
Sbjct: 209 NQNLVSRLA-IIRRSRELEDDRISALSYDHAIGVTYPYEITEDRLNDVSKLPHIGKKMIA 267
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
++E V TG + + ++ +++ F +++G+G TA+KLY G +T +D++ +
Sbjct: 268 KLEEYVETGDIEEAATIAASQRFQSLEAFTDLYGVGATTARKLYAAGCKTFEDVERYYGV 327
Query: 329 ------------------------THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
+ + R+ L+ +D+ RIPR EVE + + + +E
Sbjct: 328 DTGAGRARSGKQAKPSTTAKPKIPSITPRVALELREDLAQRIPRGEVEAIHAAVVQVLDE 387
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
V P + + G YRRGK+ GD+D+VI HP
Sbjct: 388 VRPGCVTVVVGGYRRGKSLSGDVDIVIGHP 417
>gi|62898195|dbj|BAD97037.1| deoxynucleotidyltransferase, terminal variant [Homo sapiens]
Length = 509
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDPVSCVTRAEAEAVSVLVKEAVWAFLPDAFVAMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|302654102|ref|XP_003018863.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
gi|291182544|gb|EFE38218.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
Length = 682
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 160/351 (45%), Gaps = 45/351 (12%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ E + + + + EG I + ++ ++++ + ++
Sbjct: 110 VIRLSWVHESLKAKEPLPFEPFTVY---EGRKIPKPPTASLEKALSSTTSPDRCAAQETA 166
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSS-ESLTNTLSTASASPDF---SSHHITDP 200
++GD ++++ P+SP ++ + + S P S+ +
Sbjct: 167 LYQSPGSSILERARGDTPSSSMRFIPSSPSRRVKATSGSPSVIKQRPKLYRASTSDFEEE 226
Query: 201 SLLYNPPDLNKNI---------------TEIFGKLINI--YRALGEDRRSF-SYYKAIPV 242
+ + +PP+ +N E G+L+ I R L D +Y +I
Sbjct: 227 ASIPDPPEWVRNKVVYSCCRSTPLHSPNAEFIGQLLKIKKIRELTLDEVGVRAYSTSIAS 286
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTISL 296
+ P+K++S ++V LPG ++ I + T K SK LE D ++ I+
Sbjct: 287 LSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALKVINS 342
Query: 297 FGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 343 FHNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEETVS 402
Query: 354 MERLLQKAGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + + V P+ V I+ GSYRRGK GD+DV++ H D +
Sbjct: 403 IANTILHHAKLVRPDSDFDGEGVEIIIVGSYRRGKEESGDVDVILTHRDER 453
>gi|212532843|ref|XP_002146578.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
gi|210071942|gb|EEA26031.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
Length = 710
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P+++ + +V LPG + + E + GKL + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLTLPGCDTKIANLFVEFRNSADGKLEAANVLDSDPVIN 417
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
TI F +WG+G TA+ Y ++ R LDD+ +SL+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGAKTARDFYYQRQWRDLDDVIEHGWNSLSRVQQIGLKYYDEFLAGIPRA 477
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
EV ++ + + + V P E II+ G YRRGK + GD+D+++ H D +
Sbjct: 478 EVAEIAKTIHRHANMVRPGCEYDGQGIECIIV--GGYRRGKETSGDIDLILSHRDER 532
>gi|258574165|ref|XP_002541264.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901530|gb|EEP75931.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 739
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 345 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGSLEAANQLDTDPVYS 404
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T++LF +WGIG +A+ Y + R LDD+ + DSL+ Q++G+KY+D+ IPR
Sbjct: 405 TLNLFYNIWGIGAKSARDFYYHRQWRDLDDVVEQGWDSLSRVQQIGVKYYDEFMEGIPRT 464
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
EVE + +++ + V P E II+ G YRRGK GD+D+++ H D
Sbjct: 465 EVEYIAKVVLEHARRVRPGSDYDGKGIECIIV--GGYRRGKERSGDVDMILSHRD 517
>gi|291404551|ref|XP_002718596.1| PREDICTED: terminal deoxynucleotidyltransferase [Oryctolagus
cuniculus]
Length = 510
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 111/213 (52%), Gaps = 8/213 (3%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRS----FSYYKAIPVIE 244
+P + H I++ + LN N IF I E R + ++ +A V++
Sbjct: 142 APALAVHRISEYAC-KRRTTLN-NCNRIFTDAFEILAENSEFRENEDSYVTFIRAASVLK 199
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ + LF V+G+G
Sbjct: 200 SLPFPIVSMKDTEGIPCLGDKVKGIIEEIIEEGESSEVKAVLNDERYQCFKLFTAVFGVG 259
Query: 305 PATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
T++K + G RTL ++ + SL T Q+ G +Y++D+ + + R E E ++ L+++A
Sbjct: 260 LKTSEKWFRMGFRTLSKIREDKSLKFTRMQQAGFRYYEDLVSCVTRAEAEAVDVLVKEAV 319
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LP I G +RRGK D+D +I P+
Sbjct: 320 RAYLPGAFITMTGGFRRGKKIGHDVDFLITSPE 352
>gi|121698402|ref|XP_001267810.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
gi|119395952|gb|EAW06384.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
Length = 733
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P I+ ++ LPG + E + G ++ + D +R
Sbjct: 355 AYSTSIAALAAYPSAIQRPAEILTLPGCDAKIAALFAEFQASADGTVAAAAALDSDPALR 414
Query: 293 TISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 349
T+ LFG +WG+G TA+ LY++ R LDDL +L+ Q++GLKY+D+ +PR
Sbjct: 415 TLHLFGNIWGVGAKTARDFLYQRHWRDLDDLVEHGWAALSRVQQIGLKYYDEFLAGVPRP 474
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPD 395
E E + R + V P +L GG YRRGK GD+D+V+ H D
Sbjct: 475 ESEAIARTVAAHAARVRPHARYDARGLDCVLVGG-YRRGKPLSGDVDLVLSHRD 527
>gi|344243158|gb|EGV99261.1| DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 432
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V+ LPF I S +G+P +G ++ I+ I+ G+ S++ DE+ ++
Sbjct: 147 AFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVKCIIEGIIEDGESSEVIAVLNDERYKSF 206
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G TA+K + G RTL +K+++SL T Q+ G Y++D+ + + R E E
Sbjct: 207 KLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDESLRFTRMQKAGFLYYEDLVSCVNRAEAE 266
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRR 379
+ L+++A LP+ ++ G +RR
Sbjct: 267 AINVLVKEAVAVFLPDALVTMTGGFRR 293
>gi|395828367|ref|XP_003787354.1| PREDICTED: DNA nucleotidylexotransferase [Otolemur garnettii]
gi|139001511|dbj|BAF51681.1| deoxynucleotidyltransferase, terminal [Otolemur garnettii]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F + Y + S ++ +A V++ LPF I S +G+P +G +++
Sbjct: 163 NCNHIFTDAFEIMAENYEFRENEGYSAAFMRAASVLKSLPFTIISMKDTEGVPCLGDNVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEEGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LRFTRMQQAGFLYYEDLVSCVTRAEAEAVGVLVKEAVRAFLPDAFVTMTGGFRRGKNIGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>gi|261328280|emb|CBH11257.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma brucei
gambiense DAL972]
Length = 813
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|317157314|ref|XP_001826392.2| hypothetical protein AOR_1_1366054 [Aspergillus oryzae RIB40]
Length = 1196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPD 395
V P+ I+ GG YRRGK + GD+D+V+ H D
Sbjct: 448 HANLVRPDARYDGRGVECIVVGG-YRRGKEASGDVDLVLYHRD 489
>gi|34014748|gb|AAQ56190.1| DNA polymerase beta-PAK [Trypanosoma brucei]
Length = 813
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|72389312|ref|XP_844951.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei TREU927]
gi|62358909|gb|AAX79360.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei]
gi|70801485|gb|AAZ11392.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 813
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NEDS-----------LTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGSSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|426252859|ref|XP_004020120.1| PREDICTED: DNA nucleotidylexotransferase [Ovis aries]
Length = 512
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 193 TFMRAASVLKSLPFTIISMRDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 252
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L+ + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 253 KLFTSVFGVGLKTSEKWFRMGFRSLNKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 312
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ L+++A LP+ + G +RRGK D+D +I P
Sbjct: 313 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSP 354
>gi|342181099|emb|CCC90577.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma
congolense IL3000]
Length = 929
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 53/231 (22%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF L +I +AL E ++ SY A+ +++ +P ++ A
Sbjct: 444 PDHREKLLQIFQSLADINKALDEPYKASSYVIAVEKLKRNDYVYTNIPPNIMPPGVDDAK 503
Query: 255 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ V P +G ++ + EI+TTG L++L + +R + +V G+GP TA
Sbjct: 504 RKQLIAAVNATPSVGAKLKGKMVEILTTGDLAELHSLQAKPVIRAVRELTQVHGVGPRTA 563
Query: 309 QKLYEK-GHRTLDDLKNED-------------------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++LK LT +QRLGLKY DIK RIP
Sbjct: 564 VTFFKKHGVKTVEELKQRVEEQEAAEGGKGNSREKPALQLTEAQRLGLKYHSDIKQRIPH 623
Query: 349 HEVE--------QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
EV ++ + L K E + +C GSYRR + GD+DV++
Sbjct: 624 EEVRLHEAYLKLRLRKYLGKGYE------LSIC-GSYRRRLPTSGDIDVLV 667
>gi|83775136|dbj|BAE65259.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 673
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 17/222 (7%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPD 395
V P+ V + G YRRGK + GD+D+V+ H D
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLYHRD 489
>gi|392863728|gb|EAS35504.2| high-affinity nickel transporter [Coccidioides immitis RS]
Length = 731
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRD 519
>gi|29135289|ref|NP_803461.1| DNA nucleotidylexotransferase [Bos taurus]
gi|768|emb|CAA27734.1| unnamed protein product [Bos taurus]
gi|296472648|tpg|DAA14763.1| TPA: terminal deoxynucleotidyltransferase [Bos taurus]
Length = 520
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 201 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 260
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 261 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 320
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ L+++A LP+ + G +RRGK D+D +I P
Sbjct: 321 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSP 362
>gi|146291077|sp|P06526.2|TDT_BOVIN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|133777939|gb|AAI14821.1| DNTT protein [Bos taurus]
Length = 509
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ L+++A LP+ + G +RRGK D+D +I P
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSP 351
>gi|119192864|ref|XP_001247038.1| hypothetical protein CIMG_00809 [Coccidioides immitis RS]
Length = 737
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRD 519
>gi|391869447|gb|EIT78645.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 673
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPD 395
V P+ I+ GG YRRGK + GD+D+V+ H D
Sbjct: 448 HANLVRPDARYDGRGVECIVVGG-YRRGKEASGDVDLVLSHRD 489
>gi|255935563|ref|XP_002558808.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583428|emb|CAP91440.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 662
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKA 239
+ A PD+ H+ L P L+ + +L+ I R L D +Y +
Sbjct: 261 VENAPPQPDWVRDHVVYACLRSAP--LHPPNEDFISQLVKIRRIRELTLDEIGVRAYSTS 318
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQD---------HIQEIVTTGKLSKLEHFEKDEK 290
I + P I+ ++ LPG + D + G ++ E E D
Sbjct: 319 IAALAAYPHPIQRPSEILALPGCNAKIADLFFQFQQHGGCEHTDDDGNVAAAEALETDPM 378
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPR 348
+R ++ F ++WG+G TA+ Y++G R LDD+ D+L+ Q++G+K++++ +PR
Sbjct: 379 LRVLNSFYQIWGVGAKTARDFYQRGWRDLDDIVEHGWDTLSRVQQIGVKFYEEFLEGVPR 438
Query: 349 HEVEQMERLLQK-----AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E E + +++ GEE ++ GG YRRGK GD+D+V+ H D
Sbjct: 439 AESEGIASVIRDHAGRVRGEEGNGIECVIVGG-YRRGKELSGDVDIVVSHRD 489
>gi|238493687|ref|XP_002378080.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
gi|220696574|gb|EED52916.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
Length = 673
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPD 395
V P+ I+ GG YRRGK + GD+D+V+ H D
Sbjct: 448 HANLVRPDARYDGRGVECIVVGG-YRRGKEASGDVDLVLSHRD 489
>gi|145517943|ref|XP_001444849.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412282|emb|CAK77452.1| unnamed protein product [Paramecium tetraurelia]
Length = 434
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY R +Y KAI +++ LP+ I+S+D +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKNKGRCIAYRKAIGLLKALPYPIKSSDDLKDMPTIGDKIK-- 347
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
K + E EK I VWGIGP TA Y KG RTL+DL KN+ L
Sbjct: 348 --------KEDNRNYLEGQEKNVAIGQLSRVWGIGPTTAATFYFKGIRTLEDLRKNKHLL 399
Query: 329 THSQRLGLKYFDDIKTRIPRHE 350
+Q++GL +D++ RIPR E
Sbjct: 400 NRNQQVGLHLVEDLEQRIPREE 421
>gi|290999104|ref|XP_002682120.1| predicted protein [Naegleria gruberi]
gi|284095746|gb|EFC49376.1| predicted protein [Naegleria gruberi]
Length = 309
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
+ ++E + + I F ++WG+G TA +LY G+R ++++ ++ L Q +GLKY
Sbjct: 1 MKRVEGISSSYQNQIIQEFTKIWGVGQKTAFQLYSYGYRNINEI-DKSKLNSQQLIGLKY 59
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
F + + RIPR EVEQ+ L+ + E+ P ++ GSYRRGK GD+D++I
Sbjct: 60 FYEFQQRIPRMEVEQIYNLINQVCYEINPFIVCQVCGSYRRGKQDSGDVDILI 112
>gi|440903527|gb|ELR54173.1| DNA nucleotidylexotransferase, partial [Bos grunniens mutus]
Length = 517
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 198 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDEQYQSF 257
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 258 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 317
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ L+++A LP+ + G +RRGK D+D +I P
Sbjct: 318 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSP 359
>gi|409044114|gb|EKM53596.1| hypothetical protein PHACADRAFT_176005 [Phanerochaete carnosa
HHB-10118-sp]
Length = 564
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 48/204 (23%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GE+R + SY +AI I+ P +I S QV+ L +G
Sbjct: 235 IIKRSRALEGEERSALSYSRAISAIKAYPRRITSIRQVEELSHVGT-------------- 280
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--------KNEDS--- 327
E+ + +SLF ++GIGP+TA++LY G RT+DDL + E+S
Sbjct: 281 ------IANSERFKALSLFSSIYGIGPSTARRLYALGLRTVDDLEVYFGVEPEEEESQLV 334
Query: 328 -LTHSQRLG---------------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
L H +R G L +D + IPR EVE+M R++ V +
Sbjct: 335 ELEHHERFGRASESGLGETWIKIALGLRNDFELMIPRAEVEEMGRVVMDELNIVEHGCVS 394
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD 395
G YRRGK D+D+V HPD
Sbjct: 395 TIVGGYRRGKPQSNDVDIVFTHPD 418
>gi|403217348|emb|CCK71842.1| hypothetical protein KNAG_0I00510 [Kazachstania naganishii CBS
8797]
Length = 588
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 16/275 (5%)
Query: 124 QIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNA-LSEAPNSPMSSESLTNT 182
+ Q N +SS + +D + +ES+ D+E +S + NSPM + S+
Sbjct: 119 ETQENFPSSSANSEQPSPACTAEMKDTKTSHSESETDIEGFVEMSPSSNSPMPAPSVIPD 178
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
A+ + L P +N + + +L Y G+ RS Y A
Sbjct: 179 PPVIKANEKYVR--------LTEIPRMNSQLIDAMQRLYKKYDIKGDHFRSRGYKLAKAS 230
Query: 243 IEKLPFKIESADQVK-GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IEK PF+I+S +Q + L IG S+ IQ I+ +G L L+ + E + + F
Sbjct: 231 IEKCPFQIKSGEQAQLELANIGPSIAKKIQTILASGTLPGLD--DSSELDQRLEYFTNCH 288
Query: 302 GIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GIG TA++ + + D+ E LG YF+D +I R E E+ +
Sbjct: 289 GIGTHTAKRWLALQYTSFTDVLRGSPQEFVSGWPSLLGWSYFEDWSRKISRTECEKHLSV 348
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
+++ E+ P+ + GSY RG +CGD+D++
Sbjct: 349 VKQCLSEIDPDCQVELQGSYNRGSQTCGDIDLLFF 383
>gi|302509388|ref|XP_003016654.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
gi|291180224|gb|EFE36009.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
Length = 683
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 53/355 (14%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQG--NGNTSSDGESSHRKK 142
VIR W+ +SL+ E + + + + EG I S ++ + TS D ++
Sbjct: 111 VIRLSWIHESLKAKEPLPFEQFTVY---EGRKIPKPPTSSLEKVLSSTTSPDRCAAQETA 167
Query: 143 IKSSTEDVEHFQAESKGDVETNALSEAPNSPMSS-ESLTNTLSTASASPDF---SSHHIT 198
+ S ++GD ++++ P+SP ++++ + S P S+
Sbjct: 168 LNQSPG--SSILERARGDTPSSSMRFIPSSPSRRMKAMSGSPSVIKQRPKLYRASTSDFE 225
Query: 199 DPSLLYNPPDLNKNIT---------------EIFGKLINI--YRALGEDRRSF-SYYKAI 240
+ + + +PP+ +N E +L+ I R L D +Y +I
Sbjct: 226 EEASIPDPPEWVRNKVVYSCCRSTPLHSPNEEFIDQLLKIKKIRELTLDEVGVRAYSTSI 285
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTI 294
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 286 ASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVI 341
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
+ F +WG+G A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 342 NSFHNIWGVGAKFARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEET 401
Query: 352 EQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 402 VSIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDER 454
>gi|405952072|gb|EKC19924.1| DNA polymerase mu [Crassostrea gigas]
Length = 481
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ ++ +A V++ L F + S DQ+KG +GK +Q +Q I+ G ++E D
Sbjct: 122 RALAWRRASCVLKSLKFPLTSIDQLKGAKDVGKHVQKVLQSILDHGTSDEVEKVRNDPWY 181
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + +F +V+G G TAQ+ EKG T+D+++ N R GL + +++ + R E
Sbjct: 182 KKMKIFTKVFGAGTKTAQEWIEKGWTTVDEVRQNYTKGDWRLRFGLAFHEELMELVTRLE 241
Query: 351 VEQMERLLQKAGEEVLPEVII-LCGGSYRRGKASCGDLDVVIMH 393
+ + ++ E +LP + + LCGG ++RGK D+D++ H
Sbjct: 242 ADNFTKFIKHQCETILPGISVELCGG-FKRGKTHGHDIDLLFTH 284
>gi|33356563|gb|AAA68599.2| DNA polymerase beta [Crithidia fasciculata]
Length = 376
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 10/189 (5%)
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSMQDH 269
+NI IF ++ ++ ALGE + SY ++I ++ L + + +K G G +
Sbjct: 13 ENIIRIFQEMADLNNALGEKYKVSSYLRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE--- 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L +
Sbjct: 73 AEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELLQKADS 131
Query: 326 -DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKA 382
SLT QR+G+KYF DI +IP E E L++ EVL + I +C GSYRR
Sbjct: 132 ISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCLEVLGKDYTIAIC-GSYRRRHP 190
Query: 383 SCGDLDVVI 391
GD+D ++
Sbjct: 191 FSGDVDALL 199
>gi|344274915|ref|XP_003409260.1| PREDICTED: DNA nucleotidylexotransferase-like [Loxodonta africana]
Length = 509
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
+ +A V++ LPF I S +G+P + + I++I+ G+ S+++ DE+ ++
Sbjct: 191 FMRAASVLKSLPFTIISMKDTQGIPCLEDKAKCVIEDIIEDGESSEVKAVLNDERYKSFK 250
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQ 353
LF V+G+G T++K + G R+L ++ + +L T Q G Y++D+ + + + E +
Sbjct: 251 LFTSVFGVGLKTSEKWFRMGFRSLSKIRTDKTLKFTEMQEAGFLYYEDLVSCVTKAEADA 310
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ L+++A LP+ + G +RRGK D+D +I
Sbjct: 311 VSVLVKEAVWAFLPDAFVTMTGGFRRGKKVGHDVDFLI 348
>gi|45382381|ref|NP_990720.1| DNA nucleotidylexotransferase [Gallus gallus]
gi|549065|sp|P36195.1|TDT_CHICK RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|460163|gb|AAA75280.1| terminal deoxynucleotidyl transferase [Gallus gallus]
Length = 506
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRK 397
D+D +I P ++
Sbjct: 343 DIDFLITSPGQR 354
>gi|10441984|gb|AAG17269.1|AF218027_1 unknown [Homo sapiens]
gi|119570150|gb|EAW49765.1| polymerase (DNA directed), lambda, isoform CRA_i [Homo sapiens]
Length = 248
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 289 EKVRTISLFGEVWG-IGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E + SL W I A+ + +G R+L+D++++ SLT Q +GLK++ D R+P
Sbjct: 2 EALCVCSLMPLHWSWILTASHLAAFFQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMP 61
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 62 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 109
>gi|119570149|gb|EAW49764.1| polymerase (DNA directed), lambda, isoform CRA_h [Homo sapiens]
Length = 160
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+KG R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ +
Sbjct: 21 QKGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCV 80
Query: 373 CGGSYRRGKASCGDLDVVIMHPD 395
GSYRRGKA+CGD+DV+I HPD
Sbjct: 81 ACGSYRRGKATCGDVDVLITHPD 103
>gi|410903980|ref|XP_003965471.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Takifugu
rubripes]
Length = 522
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +TE L ED R+ ++ ++ V++ LP + + ++GLP +G+
Sbjct: 152 NTVLTEALSLLAENAELNEEDGRAIAFRRSEAVLKALPKAVTNLADLRGLPCLGEHSLKI 211
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSL 328
I++++ G S++E + ++ + + + ++G+G TA + + G TL L+ + +L
Sbjct: 212 IKDVLKDGVSSEVETTRQSDRYKALKVLTGIFGVGAKTADRWIKMGISTLHQLQASGQTL 271
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+Q+ GL++++D+ + + E + + ++QK VLP +I G +RRGK + D+D
Sbjct: 272 NQAQQAGLEHYEDLNQPVAKAEADAIGDVVQKVVLSVLPGALITLIGGFRRGKPTGHDVD 331
Query: 389 VVIMHPDRKR 398
+I HP+ R
Sbjct: 332 FLITHPEEGR 341
>gi|425766657|gb|EKV05260.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum Pd1]
gi|425775308|gb|EKV13586.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum PHI26]
Length = 663
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSM-------QDH--IQEIVTTGKLSKLEHF 285
+Y +I + P I+ ++ LPG + Q H G ++ +
Sbjct: 315 AYSTSIASLAAYPHPIQRPSEILALPGCNAKIAELFSQFQQHGGCNHTDDDGNVATADAL 374
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIK 343
E D + ++ F ++WG+G TA++ Y++G R LDD+ +L+ Q++G+K++++ +
Sbjct: 375 ETDPALCVLNSFYQIWGVGAKTAREFYQRGWRDLDDIVEHGWSTLSRVQQIGVKFYEEFQ 434
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCG------GSYRRGKASCGDLDVVIMHPD 395
+PR E E + +++ V PE CG G YRRGK GD+DVV+ H D
Sbjct: 435 QGVPRAESEGIATVIRDHAGRVRPEAGGGCGIECVIVGGYRRGKGLSGDVDVVLSHRD 492
>gi|238588542|ref|XP_002391755.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
gi|215456861|gb|EEB92685.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
Length = 173
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 210 NKNITEIFGKLINIYRALG---EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+N+ + +L+ ++RA E R +SY +AI + P +I+S + + + G+GK
Sbjct: 26 NQNVVDKLQELLELHRAKPGKEEGWRVYSYTRAIRALRSYPKRIKSLKKAEAIDGVGKKT 85
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
I EI+ TG L +L+ +E+ + V + L ++G+G +TA K Y+ G RTL+DL K
Sbjct: 86 ALKIMEIIETGDLKRLK-YERTDMVEVLQLLQGIYGVGQSTAVKWYQNGCRTLEDLRKGK 144
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
L+ +Q++GL+Y+D + P EV
Sbjct: 145 GGIKLSRAQKIGLQYYDGVSVTYPFGEV 172
>gi|327303324|ref|XP_003236354.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
gi|326461696|gb|EGD87149.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
Length = 683
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 155/354 (43%), Gaps = 51/354 (14%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ + + + + + EG I+ + ++ ++++ ++
Sbjct: 111 VIRLSWIHESLKAKKPLPFEQFTVY---EGHKISKPPTASLEKASSSTTFPGRCAAQETA 167
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN----------TLSTASASPDFSS 194
+ ++GD + ++ P+SP T+ L AS S
Sbjct: 168 LNQSPGSSILGRARGDTASPSMKFIPSSPSHRMKATSDSPSVLKQRPKLYRASTSDLEEE 227
Query: 195 HHITDP----------SLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIP 241
I DP S + P L+ N E +L+ I R L D +Y +I
Sbjct: 228 ASIPDPPEWVRNKVVYSCCRSTPLLSPN-AEFIDQLLKIKKIRELTLDEVGVRAYSTSIA 286
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTIS 295
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 287 SLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVIQ 342
Query: 296 LFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 343 SFHNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDALSRVQQIGVKYYEEFLTGIPKEETV 402
Query: 353 QMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 403 SIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDER 454
>gi|242776717|ref|XP_002478888.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722507|gb|EED21925.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 707
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P+++ + +V LPG + + E + G+L + + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLSLPGCDTKIANLFVEFRNSSDGRLEAADVLDTDPVIS 417
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
TI F +WG+G TA++ Y ++ R LDD+ ++L+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGARTAREFYYQRQWRDLDDVIVHGWNNLSRVQQIGLKYYDEFLAGIPRT 477
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
EV ++ + + + P E II+ G YRRGK + GD+D+V+ H D +
Sbjct: 478 EVAEIAKTIHRHAILARPGCEYDGQGIECIIV--GGYRRGKETQGDIDLVLSHRDER 532
>gi|393212574|gb|EJC98074.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 476
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK--------LSKLEHFE 286
++ A ++ LP I S ++ + G+GK + I ++ G + E
Sbjct: 73 AFQHAFKALDALPQAITSGEEALKVVGVGKGIARRIDVYLSQGAEGSSPKPAAPPKKTPE 132
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIK 343
E+ RT+ F V GIG A++LY+ G R+LDDL+N + SL+ R L Y D +
Sbjct: 133 DIERERTLLEFRRVPGIGQVKAKRLYDAGCRSLDDLRNPEHFKSLSAPIRAALDYVDHLS 192
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+ R E+E + ++ G + E + GSYRRG SCGD+D++ HP
Sbjct: 193 ERVTRAEIETVTNII---GPLISSETRMHAVGSYRRGLPSCGDVDIIFFHP 240
>gi|239606327|gb|EEQ83314.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ER-3]
Length = 723
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 61/361 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLEAANQLDTDPV 430
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 397 K 397
+
Sbjct: 549 R 549
>gi|390599031|gb|EIN08428.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 325
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 38/167 (22%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD--------- 320
I E + TG +S+ E + DE+ +++S F V+GIGP TA+ LY +G RTL+
Sbjct: 2 IDEFLKTGSISESEKIKADERFQSLSAFSSVYGIGPNTARGLYARGLRTLEHLERYYEVW 61
Query: 321 -----------DLKNEDSL------------------THSQRLGLKYFDDIKTRIPRHEV 351
D K +D + T R L Y +D+ +IPR EV
Sbjct: 62 EDPQVAATSQRDAKTDDDVKDVKPVVIEEADVRGEGGTTLIRAALGYREDLAIKIPRDEV 121
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKR 398
E++ RL+ EEV + + G YRRGK D+D+V HPD+++
Sbjct: 122 EEIGRLMAAELEEVEKGCVSIIVGGYRRGKPESNDVDIVFTHPDKEK 168
>gi|327353100|gb|EGE81957.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ATCC 18188]
Length = 723
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 61/361 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 430
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 397 K 397
+
Sbjct: 549 R 549
>gi|261190052|ref|XP_002621436.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
gi|239591264|gb|EEQ73845.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
Length = 698
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 61/361 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 177 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 233
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 234 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 290
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 291 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 345
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 346 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 405
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 406 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 465
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 466 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 523
Query: 397 K 397
+
Sbjct: 524 R 524
>gi|326469542|gb|EGD93551.1| high affinity nickel transporter [Trichophyton tonsurans CBS
112818]
gi|326478931|gb|EGE02941.1| high-affinity nickel transporter [Trichophyton equinum CBS 127.97]
Length = 683
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 61/359 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ E + + + + EG I + ++ +T++ ++
Sbjct: 111 VIRLSWVHESLKAREPLPFEQFTVY---EGRKIPKPPTASLEKTSSTTTSPGRCAAQETA 167
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF----------SS 194
++GD +++ P++P + + S SP S+
Sbjct: 168 LHQSPGSSILERARGDTASSSTQFIPSTP------SRRMKATSGSPSVLKQRPKLYRAST 221
Query: 195 HHITDPSLLYNPPDLNKNI---------------TEIFGKLINI--YRALGEDRRSF-SY 236
+ + + +PP+ +N E +L+ + R L D +Y
Sbjct: 222 SDFEEEASIPDPPEWVRNKVVYSCCRSTPLHSPNAEFIDQLLKVKKIRELTLDEVGVRAY 281
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEK 290
+I + P+K++S ++V LPG ++ I + T K SK LE D
Sbjct: 282 STSIASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTADPA 337
Query: 291 VRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+R I F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP
Sbjct: 338 LRVIHSFYNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIP 397
Query: 348 RHEVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ E + + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 398 KEETVSIANTILHHAKLVRPDSDFDGKGVECIIV--GGYRRGKEESGDVDVILTHRDER 454
>gi|346322989|gb|EGX92587.1| cohesin complex subunit (Psm1), putative [Cordyceps militaris CM01]
Length = 2364
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 21/209 (10%)
Query: 200 PSLLY-----------NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
PS LY NPP+ + I E+ K I R L D+ +Y +I + P
Sbjct: 2037 PSYLYTTYSCQRPTPMNPPN-DAFIEEL--KNIRTLRLLQGDKIGIRAYSTSIASLAAYP 2093
Query: 248 FKIESADQVKGLPGIGKS-MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
+KI++ +G S + + QE TG+ + ++D +++ + F +WG+G A
Sbjct: 2094 YKIQTP---QGTSICWFSFIAELYQEWHATGQTEETRKSKEDTEIQVLRTFYNIWGVGDA 2150
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
A++ Y+KG R LDD+ SL+ Q++G+KY+DD + +I R EV ++ ++
Sbjct: 2151 NAREFYQKGWRDLDDIVEYGWQSLSRVQQIGVKYYDDFQEKINREEVARIANIILNHARR 2210
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+ + G YRRG+ GD+DV++ H
Sbjct: 2211 LDHGYEMAVVGGYRRGRDENGDIDVLLTH 2239
>gi|164660955|ref|XP_001731600.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
gi|159105501|gb|EDP44386.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
Length = 397
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 155 AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHHITDPSLLYNPPDLN 210
++S+ ++ N + +P S + + + ASP+ S + I P+ L +P N
Sbjct: 26 SKSRQSIDPNHFDDPDATPTPSPTW---IDSQEASPNQGWVNSDYAIFRPTPLVSP--WN 80
Query: 211 KNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESAD--QVKGLPGIGKSMQ 267
+ + + + + ++R L D S +Y +A ++ P+ +++ D Q+K + GIG M
Sbjct: 81 QPLVDEL-ECVRMHRRLTRDAHSEMAYLRAASAVKAAPYPLKALDEMQLKAIKGIGPKMI 139
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
IQ+ G + + E D V+T+ F ++ G+GP +++LY++G RTL+D+
Sbjct: 140 TVIQQFYEHGYIPEAEIIRNDRAVQTMFHFMKLHGVGPHMSERLYKEGCRTLEDVILTGK 199
Query: 328 LTHSQRLG----LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+ + RLG L D+ IPR +VE + + + + ++ + G YRRGK
Sbjct: 200 MEFANRLGPSISLSMLPDLLRPIPRAQVECIRNDILRVLDGLVSNAQAVIVGGYRRGKEL 259
Query: 384 CGDLDV 389
GD+D+
Sbjct: 260 SGDVDL 265
>gi|119570148|gb|EAW49763.1| polymerase (DNA directed), lambda, isoform CRA_g [Homo sapiens]
Length = 106
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQ 96
>gi|426197680|gb|EKV47607.1| hypothetical protein AGABI2DRAFT_118163 [Agaricus bisporus var.
bisporus H97]
Length = 577
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 40/203 (19%)
Query: 233 SFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+ +Y +A+ +I+ P I + ++ LPG+G ++ I+E + G + + E + E
Sbjct: 214 ALAYERAVAIIKSYPSVITRDNFRQEISKLPGVGSKVRSKIEEFINNGTIEETETTLESE 273
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRT------------------LDDLKNEDSLTHS 331
+ R++SLF V+GIGP+ A+ LYE G R+ LDD++++ +
Sbjct: 274 RYRSLSLFNTVYGIGPSAARHLYELGLRSVGDLERYYDVPQGANASQLDDIESQTFTPNG 333
Query: 332 QRLGLKYF-------------------DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+ + LK F +D+ T IPR E+E++ R++ E+V
Sbjct: 334 RPVPLKSFTEGNAKIPPISVKVALALREDLNTPIPRAELEEIHRVIMSELEQVQAGCTST 393
Query: 373 CGGSYRRGKASCGDLDVVIMHPD 395
G +RRGK D+D+VI H D
Sbjct: 394 VVGGHRRGKLESNDMDIVITHSD 416
>gi|170097211|ref|XP_001879825.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645228|gb|EDR09476.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 811
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 33/214 (15%)
Query: 191 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA-LG-EDR-RSFSYYKAIPVIEKLP 247
+FS D ++Y P K +TE L+ ++ A +G EDR R+FSY K+I + P
Sbjct: 604 NFSEGDEKDEKVVYGGP-APKRLTE----LMELHEAKMGDEDRWRAFSYNKSIRALRNYP 658
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
++ S + + + G+G+ I+EI+ TG+L ++ +E+ ++V++ LF ++G+G +T
Sbjct: 659 KRLNSYAEARNIRGVGERTARKIEEILETGELRRI-RYERTDEVKSTRLFQGIYGVGRST 717
Query: 308 AQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFD----------------DIKTRIPR 348
A K Y G RTLDD+ K SL+ +Q +G++++D DI R+PR
Sbjct: 718 AFKWYAAGCRTLDDISAGKFGVSLSRAQEIGIRFYDGANANFTPHTTLILQTDINDRMPR 777
Query: 349 HEVEQMERLLQKAG-----EEVLPEVIILCGGSY 377
E + + L++ G V +LC Y
Sbjct: 778 IEAKAIFDLIKPIGFNLFMSSVFQRASLLCSTLY 811
>gi|67539888|ref|XP_663718.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|40738899|gb|EAA58089.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|259479696|tpe|CBF70157.1| TPA: terminal deoxynucleotidyl transferase, putative
(AFU_orthologue; AFUA_2G08840) [Aspergillus nidulans
FGSC A4]
Length = 665
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGIG 304
P++I Q+ LPG + + E + G L+ E +KD +RT+ F +WG+G
Sbjct: 331 PYEIRRGSQILSLPGCDSKIANLFVEFKASESGTLAAAEALDKDPDLRTLHTFYNIWGVG 390
Query: 305 PATAQK-LYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
TA++ Y + R LDD+ SL+ Q++G+KY+D+ IPR E E + +++ +
Sbjct: 391 SKTAREFFYARQWRDLDDIVEHGWHSLSRVQQIGVKYYDEFLLDIPREETEAIGKIICQH 450
Query: 362 GE--EVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P E II+ GSYRRGK D+D+++ H D
Sbjct: 451 ANSASVRPTAQYDGHGVECIIV--GSYRRGKPVSHDVDIILSHRD 493
>gi|296416884|ref|XP_002838099.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634005|emb|CAZ82290.1| unnamed protein product [Tuber melanosporum]
Length = 598
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 221 INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK- 278
I + R L D +Y AI ++ P+ + S +V LPG +E +T+
Sbjct: 262 IKLSRVLTSDGVGIRAYSTAIATLQAYPYPLISPSEVSLLPGCDGKSSALFEEYITSPDH 321
Query: 279 -LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNED--SLTHSQRL 334
L+ + EK + LF +WG+GP A++ Y+KG +TL+D+ + LT +Q++
Sbjct: 322 GLAVVRELEKSPSFNILKLFSSIWGVGPVGAREFFYDKGWKTLEDIVDHGWGQLTRAQQI 381
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
G+KYFD+ ++ I R+E + ++ KA ++ + G YRRGK D+D+++ H
Sbjct: 382 GVKYFDEFQSPISRNEARDIAAVVGKAAAKLRAGMDYTIVGGYRRGKMEIHDVDILLSH 440
>gi|45190568|ref|NP_984822.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|44983510|gb|AAS52646.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|374108044|gb|AEY96951.1| FAEL039Wp [Ashbya gossypii FDAG1]
Length = 508
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
P + N + +L R GE R+ +Y A + +LP+ I++ +Q + LP +G
Sbjct: 130 TPLEGNAKVACALQQLAERCRLQGEAFRNRAYLLAREAVLELPYSIQTYEQARSLPNVGD 189
Query: 265 SMQDHIQEIVTTGKLSKLE-HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ I + G + LE DE++ + F +GP AQ+ G + D+
Sbjct: 190 GIAQKIALLAAGGSVPGLELELTPDERI--VRYFAACHDVGPGRAQQWRALGFESFADVL 247
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
L + G+++++D + RIPR EV + +L++ + VI GSY RG
Sbjct: 248 RASPQWRLPWAMLYGMRFYEDWQLRIPRDEVGEHAAVLEQCAPAGMSVVI---AGSYSRG 304
Query: 381 KASCGDLDVVI 391
+CGD+DVV+
Sbjct: 305 STTCGDIDVVL 315
>gi|299472566|emb|CBN80507.1| DNA polymerase mu [Ectocarpus siliculosus]
Length = 587
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 22/203 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N IT++ + +Y+ +G+ +R+ S+ + V+ L I S +++ + +G+ M +
Sbjct: 201 NHEITDVLDAMTKMYKVVGDGQRADSFMRLSSVLRFLDRTIRSGSEIRHVHHVGERMVEA 260
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-----LKN 324
+ EI+ TG L +LE + + + +V G+G TA+ Y +G R+++D L N
Sbjct: 261 VDEILATGTLGRLEELKSHPRNQVCQQLMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPN 320
Query: 325 EDSLTHSQR---------LGLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLPEVII 371
+D ++ +GLK+F D++ I R EV +++ ++ G E PE +
Sbjct: 321 DDDTEGDEKRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTL 380
Query: 372 L---CGGSYRRGKASCGDLDVVI 391
L CGG +RRGK + D+DV++
Sbjct: 381 LFEVCGG-FRRGKETLHDVDVLV 402
>gi|238577375|ref|XP_002388369.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
gi|215449591|gb|EEB89299.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
Length = 372
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 214 TEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI 273
T+ F +NI++ ++R S A P P E+ D V LP +G I+E
Sbjct: 1 TQRFAVGLNIFK----NKRVLSGRIAYPK----PITSENVDDVAKLPFVGDKALFKIKEY 52
Query: 274 VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----------- 322
+ TG +S+ + ++ ++++ F + GIG TA+KLY RTL DL
Sbjct: 53 LHTGHISEAQTILASQRYQSLTAFTSIHGIGSITARKLYSMNLRTLQDLDVYYDVYSPSI 112
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
LT L L+ +D+ +IPR EVE M + +E+ + G YRRGK
Sbjct: 113 STCKDLTIQVALALR--NDLSQKIPREEVEAMRDTVMNELDEIKKGCVCTITGGYRRGKQ 170
Query: 383 SCGDLDVVIMHPD 395
D+D+V HPD
Sbjct: 171 ESNDVDIVFTHPD 183
>gi|326437287|gb|EGD82857.1| DNA polymerase beta, variant [Salpingoeca sp. ATCC 50818]
Length = 259
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%)
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
V G GPA A+K ++G TL++L + LT +QR+GLK+ D + RIPR EV+++ +
Sbjct: 21 VVGFGPAAARKFVDQGVTTLEELAKQSGLTSTQRIGLKHHHDFEERIPRDEVDRLRKQAF 80
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
EV P++ GSYRRG +S GD+D+++ HP+
Sbjct: 81 AIISEVDPKLTAEVCGSYRRGASSSGDIDILMTHPE 116
>gi|303312517|ref|XP_003066270.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
gi|240105932|gb|EER24125.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
Length = 731
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ I R
Sbjct: 407 TLNMFYNIWGVGAKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGITRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPD 395
EVE + ++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISHVVLEHARRARPDSDYDGKGIECIIV--GGYRRGKERSGDVDIILSHRD 519
>gi|219127150|ref|XP_002183804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404527|gb|EEC44473.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 570
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 9/173 (5%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQV----KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
+S+S+ + L F+I + +V + G G S D I + + T + S+L + E
Sbjct: 163 KSYSFQITAGRLLHLGFEIRDSPEVLRHLASINGFGSSTMDIITDYLRTQQCSRLRNLES 222
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH-----SQRLGLKYFDDI 342
D + +WG+G A++L + G + +++++ L + +Q +G+ +DD+
Sbjct: 223 DPDRVAMKNMMNIWGVGRVRAKELVDAGFKRINEVRQAVELGNLQLERNQYIGVLCYDDL 282
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ R EVE + +++ + PE + GSYRRGK +CGD+D++I H D
Sbjct: 283 LEKMDRTEVESIGKIISNIFKMSYPEAEVCVMGSYRRGKHACGDVDILITHED 335
>gi|58271038|ref|XP_572675.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228934|gb|AAW45368.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 343
+E +E R ++LF +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 443 YEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSTGQQIGLALYEDLR 502
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+RIPR E +Q+ L++ + V ++ + GSYRRG + GD+D++I D
Sbjct: 503 SRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGDVDILITRDD 554
>gi|260817830|ref|XP_002603788.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
gi|229289111|gb|EEN59799.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
Length = 430
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHE 350
T+ LF ++G+G ATA+K YE+G RTLDD++N+ SL Q +GL+ + D+ T + E
Sbjct: 157 TMQLFTGIFGVGSATARKWYERGFRTLDDIRNDSTLSLKKDQTIGLELYQDLNTPVTLAE 216
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ ++ +++ +++LP ++ G +RRGK D+D++I HP
Sbjct: 217 ADIIQEMVRAEVQKLLPGATVVLTGGFRRGKTKGHDVDLLISHP 260
>gi|321261910|ref|XP_003195674.1| hypothetical protein CGB_H2300W [Cryptococcus gattii WM276]
gi|317462148|gb|ADV23887.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 690
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 343
+E +E R I++F +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 438 YEDNEHARCIAVFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSPGQQIGLALYEDLR 497
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+RIPR E Q+ L++ + V ++ + GSYRRG S GD+D++I D
Sbjct: 498 SRIPREECRQIFELIKLEAKTVDEKLWVEIMGSYRRGSESSGDVDILITRDD 549
>gi|296812843|ref|XP_002846759.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
gi|238842015|gb|EEQ31677.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
Length = 685
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 292
+Y +I + P K++ ++V LPG + + E G L D +
Sbjct: 279 AYSTSIASLAAYPHKLKLPEEVVSLPGCENRIANLFAEWKHSKNGTLDSATPLTTDPALS 338
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
I F +WG+G +A++ Y ++ R LDD+ + D+L+ Q++G+KY+D+ IPR
Sbjct: 339 VIHSFYNIWGVGAKSAREFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYDEFLAGIPRE 398
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRK 397
E + + + + V P+ I+ GG YRRGK GD+DV++ H D +
Sbjct: 399 ETASIAATIWRHAKRVRPDADFDGEGVEYIIVGG-YRRGKEVSGDVDVILTHRDER 453
>gi|159484785|ref|XP_001700433.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
gi|158272320|gb|EDO98122.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
Length = 1599
Score = 82.0 bits (201), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
+A+ V +L ++S DQV+ L G+G ++EI+ TG+L + +E E T+ LF
Sbjct: 1115 RALAVCARLTQPLQSPDQVQRL-GLGAKTAKKLEEILATGRLQRNAVWEGSELRATMKLF 1173
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
+VWG +TA+K Y G R+L D+ LT QRLGL +F D R+ R EV +
Sbjct: 1174 TQVWGCAESTARKWYVGGARSLSDVAARSDLTAQQRLGLTHFHDFSRRLARAEVAEAAAG 1233
Query: 358 LQKAGEEVLPEVIILCG------------GSYRRGKASCGDLDVVI 391
+++ EVL ++ L GSY RG S D+D +I
Sbjct: 1234 VRRVTLEVLQDLTGLPQHVVADRLHVRPMGSYARGAPSSSDVDFII 1279
>gi|432885097|ref|XP_004074656.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oryzias
latipes]
Length = 358
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
E+ R ++ +A +++ LP + SA Q++GLP +G+ I+EI+ TG +++E +
Sbjct: 207 EEGRGVAFRRAAALLKTLPSAVMSASQLRGLPCLGEHSLRVIKEILETGTSTEVESTKGS 266
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIP 347
E+ + + + ++G+G TA + +G L L+ L +QR GL+++ DI +
Sbjct: 267 ERFKALKVLTGIFGVGAKTADRWIREGIHDLHQLRASGQVLNRAQRAGLQHYADINQPVT 326
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
R E + +E +++KA VL I+ G +RR
Sbjct: 327 RAEADAIEAIVEKAVSSVLRGAQIVLTGGFRR 358
>gi|194238174|ref|XP_001916245.1| PREDICTED: DNA polymerase beta-like, partial [Equus caballus]
Length = 123
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNEGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLE 123
>gi|402220520|gb|EJU00591.1| Nucleotidyltransferase [Dacryopinax sp. DJM-731 SS1]
Length = 269
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 328
EI+ TG+L +++ E E+ R LF ++ +G A + + G RTL+D+ K+E L
Sbjct: 2 EIIETGQLQRIQA-EDTEEYRVCRLFAGIYDVGRKRAHEWWRMGLRTLEDVEKRKDEIKL 60
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q +GLKY+DD++ RIPR E + +++ + + + GSYRRG + GD+D
Sbjct: 61 TRNQAIGLKYYDDLQERIPRAEASVIFDKIKELAMTIDGNITLYIMGSYRRGAETVGDID 120
Query: 389 VVI 391
+++
Sbjct: 121 ILL 123
>gi|50303085|ref|XP_451480.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640611|emb|CAH03068.1| KLLA0A11033p [Kluyveromyces lactis]
Length = 506
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 9/235 (3%)
Query: 161 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKL 220
VET+ S+ N+ + + S + D + H +D +L+ + N + ++ L
Sbjct: 100 VETD--SQESNTGVPDTHQVTSPSETHDTADTNVSHSSDANLIMPMNNPNYKLIKVLKSL 157
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKL 279
Y+ + R Y K I +++ + KIES D ++ G+ K + I ++ G+
Sbjct: 158 EKRYKLQNDTFRYLGYMKMIKILQNVRVKIESEEDAIEN--GLSKGLSKKIPFLLKLGES 215
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 339
+ D +T+ F E GIG +++ G+ T +DL + +Q GL ++
Sbjct: 216 G--SELKMDTSEQTLLYFQECHGIGAFKSKQYVNMGYSTFEDLI--PYMNWTQLTGLAFY 271
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+D + IPR E + E +++KA EV + + GSYRRG+ GD+D+V+ P
Sbjct: 272 EDWQLSIPREETMKHEAIIRKAMNEVNENLCMEITGSYRRGQPRSGDIDIVVHMP 326
>gi|410730677|ref|XP_003980159.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
gi|401780336|emb|CCK73483.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
Length = 570
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 7/182 (3%)
Query: 218 GKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG-LPGIGKSMQDHIQEIVTT 276
G L Y+ G+ R+ Y A IE+ PFKIES Q + L IG S+ IQ I+
Sbjct: 196 GTLAKKYKLKGDQFRARGYRLARASIEECPFKIESGAQAQQQLANIGPSIAKKIQLILNV 255
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQ-- 332
G L LE E T+ F G+G TA++ + +L D+ K D LT
Sbjct: 256 GSLPGLEETVNLET--TLDYFSNCHGVGAYTAKRWHLFKLNSLTDVVKKFPDELTKDWPI 313
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
LG Y++D RI R E E+ ++++ ++ + GSY RG +CGD+D++
Sbjct: 314 LLGWSYYEDWSKRIRRKECEEHLAIVKRKLAKIDSNFQVELQGSYARGAETCGDIDLMFY 373
Query: 393 HP 394
P
Sbjct: 374 KP 375
>gi|428178310|gb|EKX47186.1| hypothetical protein GUITHDRAFT_52423, partial [Guillardia theta
CCMP2712]
Length = 274
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ IQE+ TG+++KLE + + ++ + VWG+G A++L G R++++LK + +
Sbjct: 4 EKIQELFDTGRIAKLETMKSNPNLKILQELKNVWGVGDTLARRLIAAGIRSVEELKGKTT 63
Query: 328 L----------THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGS 376
+ TH R+G+++ +DI T++PR EV +E+ +++ + V + ++ GS
Sbjct: 64 VGEGARQVHLPTHV-RIGVEHNEDINTKMPRREVAALEQAIRQHAQRVGGATVEVIACGS 122
Query: 377 YRRGKASCGDLDVVIMHPD 395
YRRGK GD+D ++ D
Sbjct: 123 YRRGKQESGDIDCLLTRKD 141
>gi|54304021|emb|CAH59753.1| DNA polymerase lambda [Homo sapiens]
Length = 211
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 314 KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC 373
+G + +D++++ SLT Q +G K++ D R+PR E ++E+ +QKA + + +
Sbjct: 1 QGFXSXEDIRSQASLTTQQAIGXKHYSDFLERMPREEATEIEQTVQKAAQAFNSGXLCVA 60
Query: 374 GGSYRRGKASCGDLDVVIMHPD 395
GSYRRGKA+CGD+DV+I HPD
Sbjct: 61 CGSYRRGKATCGDVDVLITHPD 82
>gi|72138850|ref|XP_796033.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like
[Strongylocentrotus purpuratus]
Length = 573
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGI--GKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ ++ KA ++ LP +I+ + V+ L I G + I +I+ G +++E ++ +
Sbjct: 188 RALAFRKASAALKALPEEIKKPEDVENLYDIRGGAHCKGVILDILENGYSAEVEGIKRSD 247
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIP 347
+ +SLF ++G G +T+ K + G R+LDD+K +LT SQ G++Y++D+ T +
Sbjct: 248 WYQNMSLFTGIYGCGISTSAKWCQMGLRSLDDVKGSYILNLTRSQLKGIEYYNDLNTPVT 307
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ E + + + + + P ++ G + RGK D+D +I HP+
Sbjct: 308 KEEAKWIHDAVSQEVAAIQPGSTVVMTGGFLRGKDMGHDVDFLISHPE 355
>gi|401416300|ref|XP_003872645.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488869|emb|CBZ24119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 673
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 81/266 (30%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S SY + +
Sbjct: 141 PDYRERVVQIFEQLTQINSALGERFKSQSYGRTVERFKRGDKVFQLLPPNLLPLPEDDPK 200
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
VIE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 201 KKAVIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 259
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD------------DLKNE 325
L +L H E +R I +V G+GP TA ++K RT+ D+ N+
Sbjct: 260 LEELHHQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYDIRTVAQLRDYAIKAGELDMSNK 319
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 368
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 320 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 379
Query: 369 -VIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 380 YELVVC-GSYRRQVESAGDIDVLITH 404
>gi|432113117|gb|ELK35695.1| DNA nucleotidylexotransferase [Myotis davidii]
Length = 466
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 146 LAFMRAASVLKSLPFTIVSMKDTEGIPCLGDRVKSIIEEIIEDGESSEVKAVLNDERYQS 205
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEV 351
LF V+G+G T++K + G RTL ++++ +L T Q+ G Y++D+ + + + E
Sbjct: 206 FKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKTLKFTRMQKAGFLYYEDLVSCVTQAEA 265
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYR 378
E + L+++A LP+ + G +R
Sbjct: 266 EAVGVLVKEAVWAFLPDAFVTVTGGFR 292
>gi|194226389|ref|XP_001489108.2| PREDICTED: DNA polymerase beta-like isoform 1 [Equus caballus]
Length = 227
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%)
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
KNED L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG
Sbjct: 19 KNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAE 78
Query: 383 SCGDLDVVIMHP 394
S GD+DV++ HP
Sbjct: 79 SSGDMDVLLTHP 90
>gi|410080590|ref|XP_003957875.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
gi|372464462|emb|CCF58740.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
Length = 591
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 191 DFSSHHITDPSLLYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
D H+TD L P KN + + +L Y G+ R+ SY A IE+ PF
Sbjct: 187 DTPGMHVTD---LIASPSRAKNALLLDAMSRLYQKYETKGDKFRAKSYKFAKTSIEQCPF 243
Query: 249 KIESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
IES Q + L IG S+ IQ I+ G L L + E + F G+GP
Sbjct: 244 VIESGKQAQEELQTIGPSIAKKIQTILDFGTLPGLT--DTSELETKVDYFKTCHGVGPHR 301
Query: 308 AQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
A++ YE L E S G YF++ RI R E ++++ E
Sbjct: 302 AKRWHLLRYESFSDVLRKAPEEMSNDWPILFGWSYFEEWSKRITRKECNVHLEIIKEELE 361
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
V P V + GSY RG ++CGD+D++ P+
Sbjct: 362 RVDPSVEVEIQGSYIRGASTCGDIDLLFFKPN 393
>gi|366988055|ref|XP_003673794.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
gi|342299657|emb|CCC67413.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
Length = 576
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 32/254 (12%)
Query: 148 EDVEHFQAESKGDVETNALSEAPN-SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
E+V +AE++G++E + + N + M E HI +P + +
Sbjct: 140 ENVPDSEAETEGNIELESFEDVENRNSMQYE------------------HINEPLIESSY 181
Query: 207 PDLNKNITEIFGKLINI----YRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPG 261
+L KN ++ K +N+ YR G+ R+ SY A IEK P+KIES Q + L
Sbjct: 182 INLGKN--DVLIKALNLLAKKYRLKGDQFRARSYTLAKASIEKCPYKIESGAQAQRELTN 239
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG S+ I I+ TG L LE E R + F +G A++ + D
Sbjct: 240 IGLSIAKKIDIILKTGILPGLEEVNLVE--RKLDYFTNCHAVGSYKAKRWELFKLSSFSD 297
Query: 322 LKN---EDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
+ +D +T L G Y++D RI R E E ++++ + + P + GSY
Sbjct: 298 VVTRFPDDFITDWTMLFGWSYYEDWSKRISREECECHLKIVKDTLKTIDPSCHVELQGSY 357
Query: 378 RRGKASCGDLDVVI 391
RG +CGD+D++
Sbjct: 358 VRGSETCGDIDLLF 371
>gi|390466524|ref|XP_002751420.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Callithrix
jacchus]
Length = 302
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRSSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLG 335
T Q++G
Sbjct: 273 TQQQKVG 279
>gi|156848274|ref|XP_001647019.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
gi|156117702|gb|EDO19161.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
Length = 596
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 268
N I KL Y+ G+ R+ SY AI I+K I S Q K +P IG S+
Sbjct: 215 NDRIVNPLAKLARKYKVEGDTFRARSYNLAILSIDKYTLPITSGIQAQKEIPNIGPSIAK 274
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL----YEKGHRTLDDLKN 324
IQ I+ TG L LE + E+ ++ F G+G TA++ + L+ N
Sbjct: 275 KIQRILDTGTLPGLE--QASEQFDSLQYFSTCHGVGSETAKRWNSLKLDSFKDVLEKFPN 332
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
E ++ G Y++D + +IPR + ++++ + P+ + GS+ RG C
Sbjct: 333 EFAVEWPILFGWSYYEDWQKKIPRSVCAKYLQIVEDELFLLDPDFKVELQGSFNRGLPEC 392
Query: 385 GDLDVVIMHP 394
GDLD++ P
Sbjct: 393 GDLDLLFYKP 402
>gi|345330196|ref|XP_001505901.2| PREDICTED: DNA nucleotidylexotransferase-like [Ornithorhynchus
anatinus]
Length = 513
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 175/393 (44%), Gaps = 71/393 (18%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD--LEALLQQVSKQ 76
F +F++EK + R + + G VE +LS+ VTH++A + +L+ ++ Q
Sbjct: 14 FNEFVLFILEKKMGTTRRAFLMELARRKGFRVESELSESVTHIVAENNSCSDVLEWLAVQ 73
Query: 77 HL---ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSS 133
++ +RF+ ++ WL + +++G+ V E + + +L EN+ SQ QG+
Sbjct: 74 NVGDSSRFE--LLDISWLTECMKVGKPV-EAIGKHQLI--NENVLKLQRSQFQGD----- 123
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
SSH P +P + A+ S
Sbjct: 124 ---SSH---------------------------PPPPETP------------SLATKQVS 141
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+ + L N N+ T+ F L + + ++ +AI V++ LPF I
Sbjct: 142 QYACERRTTLNN---CNQKFTDAFEILAKDFEFRENEGICLAFMRAISVLKCLPFTIVRM 198
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA-TAQKLY 312
++G+P +G ++ I+EI+ G+ S ++ DE+ R+ LF V+ +G +
Sbjct: 199 KDIEGVPWLGDQVKSIIEEIIEDGESSSVKAVLNDERYRSFQLFNSVFEVGLTDNGENGI 258
Query: 313 EKGHRTLDDLKNEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMERLLQKAG 362
+G +TL+++ + +++ ++ G Y++D+ + + + E + + ++++A
Sbjct: 259 ARGFQTLNEVITDKNISLTKTTLSTSLWNYLPGFLYYEDLVSCVAKEEADAVYLIVKEAV 318
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LPE ++ G +RRGK D+D +I P+
Sbjct: 319 RAFLPEALVTLTGGFRRGKKIGHDVDFLISDPE 351
>gi|407832611|gb|EKF98510.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 63/247 (25%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NED--- 326
Y+K G +++ +L+ N+D
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGSNCGNSGGAKKGSKKTSAGNDDPVL 277
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 385 GDLDVVI 391
GD+DV+I
Sbjct: 337 GDIDVLI 343
>gi|71666010|ref|XP_819969.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70885293|gb|EAN98118.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 63/247 (25%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NED--- 326
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 385 GDLDVVI 391
GD+DV+I
Sbjct: 337 GDIDVLI 343
>gi|409080765|gb|EKM81125.1| hypothetical protein AGABI1DRAFT_36756 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 578
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 37/177 (20%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ LPG+G ++ I+E + G + + E + E+ R++SLF V+GIGP+ A+ LYE G
Sbjct: 240 ISKLPGVGSKVRSKIEEFIKNGTIEETETTLESERYRSLSLFNTVYGIGPSAARHLYELG 299
Query: 316 HRT------------------LDDLKNEDSLTHSQRLGLKYF------------------ 339
R+ LD+++++ + + + LK F
Sbjct: 300 LRSVGDLERYYDVPQGVNASQLDEIESQTFTPNGRPVPLKSFTEGNAKIPPISVKVALAL 359
Query: 340 -DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+D+ T IPR E+E++ R++ E+V G +RRGK D+D+VI H D
Sbjct: 360 REDLNTPIPRAELEEIHRVIMSELEQVQAGCSSTVVGGHRRGKLESNDMDIVITHSD 416
>gi|50293401|ref|XP_449112.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528425|emb|CAG62082.1| unnamed protein product [Candida glabrata]
Length = 568
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Query: 134 DGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
D ES R K ++ + E ++ + DVE N S + +S ++ T L ++ S
Sbjct: 115 DSESQERDTKNVQFHSAGNEEAGSDDETDVEGNKESTGDMTDVS-DTATPQLQSSPLSKY 173
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
D +L N G+L+ Y G+ RS SY A +EK P KI
Sbjct: 174 IKQEEDIDNQVLINA----------LGRLVKKYEVKGDQYRSRSYRLAKQAVEKYPHKIT 223
Query: 252 SADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
S Q + L IG S+ IQ ++ TG L LE DE ++ F E +GIG A+K
Sbjct: 224 SGSQAQRQLSNIGSSIAKKIQLLLDTGTLPGLEDPATDEYESSLGYFSECYGIGVPMAKK 283
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERL 357
TL N + + RL G Y++D RIPR EV L
Sbjct: 284 WI-----TL----NISTFYRAVRLHPKLFISDWPILYGWTYYEDWSKRIPRDEVTAHFEL 334
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+++ V + GSY RG GD+D++
Sbjct: 335 VKEEVRRVGNGCSVEMQGSYVRGARDTGDVDLMF 368
>gi|310831448|ref|YP_003970091.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386632|gb|ADO67492.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
Length = 350
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 33/219 (15%)
Query: 209 LNKNITEIFGKLIN---------IYRALGEDRRSFSYY-----KAIPVIEKLP--FKIES 252
+N N+ F KL++ I L +++R S+ + + +I+K P I +
Sbjct: 1 MNSNVISQFEKLVSKNQQDLDNAIKNKLTDEQRKQSFKLRTNKRVLSIIKKYPEELTINN 60
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--KDEKVRTISLFGEVWGIGPATAQK 310
++ L GIGK +Q I G + +L+ + K+ K I EV IG +TA++
Sbjct: 61 YKELGDLNGIGKGTITKLQNIFEKGYIDELKGYTAPKNNKEDIIKNLEEVINIGRSTAKE 120
Query: 311 LYEKGHRTLDDLK---NEDSLTHSQR--LGLKYFDDIKTRIPRHEVEQMERLLQ------ 359
L E G +++DDLK N + + + LGLKY+ I+ RIPR+ + ++ ++
Sbjct: 121 LVESGVKSVDDLKKKVNTKKIEVNSKILLGLKYYQKIQERIPRNHITEINEFIKNRINFL 180
Query: 360 KAGEEVLPE---VIILCGGSYRRGKASCGDLDVVIMHPD 395
E++ E + +C GSYRR K + GD+D++I +
Sbjct: 181 NKKEKLTAENKYIFKIC-GSYRRNKPTSGDIDILITQKN 218
>gi|71005486|ref|XP_757409.1| hypothetical protein UM01262.1 [Ustilago maydis 521]
gi|14456135|emb|CAC41651.1| putative DNA polymerase X [Ustilago maydis]
gi|46096415|gb|EAK81648.1| conserved hypothetical protein [Ustilago maydis 521]
Length = 749
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I++ + ++ + K+++ R +F V+GIG A++ + G TL+ L+ E SL
Sbjct: 467 IKQRLLLDRVDAINSLSKEDRARV--MFQRVYGIGATKAERFVQAGFLTLEQLR-EASLE 523
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GL + +DI+ IPR E +Q +L V ++ I GS+RRG DLD
Sbjct: 524 RAQRIGLNHMNDIECLIPRSESQQWLDVLLDVVRSVDSKLSIELLGSFRRGDHYSSDLDF 583
Query: 390 VIMHPD 395
V+ HPD
Sbjct: 584 VLFHPD 589
>gi|47221680|emb|CAG10152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS------- 265
+ + F L Y + R ++ +A V++ LP + S + LP +G
Sbjct: 8 LQDAFEVLAECYEFNQMEGRCLAFRRAASVLKSLPRVLSSLEDTHHLPCLGDHAKAIIDL 67
Query: 266 ---------------MQDHIQ------EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
M +H + E++ G+ ++ DE+ +T+ LF V+G+G
Sbjct: 68 RHPPSTLMEDLLADFMPEHSEDFKVAPELLQHGRAFDVQKVLSDERYQTLKLFTSVFGVG 127
Query: 305 PATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
P TA+K Y G R + + + S L H Q+ G +++DI + + E + +++ +
Sbjct: 128 PKTAEKWYRTGLRAFEHILADRSIHLNHMQQNGFLHYEDISRAVSKAEARALTKVIDEVV 187
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ P+ I+ G +RRGK D+D++
Sbjct: 188 HAITPDAIVALTGGFRRGKEFGHDVDIIF 216
>gi|299740693|ref|XP_001833920.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
gi|298404368|gb|EAU87950.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
Length = 1047
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K ++ I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 628 KQVKFAIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIR 686
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
L+ Q +GLKY+DDI +R+PR E + + +++ G
Sbjct: 687 QGKGGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPIG 728
>gi|444319590|ref|XP_004180452.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
gi|387513494|emb|CCH60933.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
Length = 613
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 268
N+ + + KL I+ G++ RS Y A + K P KI+SA + + +P IG S+
Sbjct: 225 NELLIKTLDKLSKIHTIRGDEFRSRGYKLAKISVSKYPHKIKSAKEAQEKIPHIGASIAK 284
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNEDS 327
I+ ++ TGKL LE K E + F +GIGP TA+ +L++ LK
Sbjct: 285 KIETLLKTGKLPGLEIASKLESRK--EYFSSCYGIGPVTAENWDSLQINSLNEALKRFPK 342
Query: 328 LTH---SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ S G KY++D +IPR E + +++++ + + + GS+RR +A C
Sbjct: 343 IFQHDWSILFGWKYYEDWNKKIPRSECVKHMQIIKEELKLLDDSIECEIQGSFRRNRALC 402
Query: 385 GDLDVVI 391
GD+D++
Sbjct: 403 GDIDILF 409
>gi|403278454|ref|XP_003930820.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Saimiri
boliviensis boliviensis]
Length = 457
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQPQKL 272
Query: 329 THSQRLG 335
T Q++
Sbjct: 273 TQQQKVA 279
>gi|392585337|gb|EIW74677.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 526
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ AI I+ L + IESA Q++ L G+G + + + + K S + ++ I
Sbjct: 17 AFKNAIRAIQSLDYPIESAQQIRSLKGVGSGIVKRVDDYLNQHKASPSSQSKAAARL-II 75
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEV 351
+ +V G+GP A+ LY+ G +L + L +QR L Y + + +PR E
Sbjct: 76 NELQQVPGVGPTMAKSLYDAGCTSLVQMHQPQYSAMLKPAQRACLPYVSHLTSPVPRAES 135
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E + +++ + E ++ GSYRRG + D+D+++ HP
Sbjct: 136 EAVVDFVRR---HIPREFEVVVAGSYRRGAPASSDIDILLFHP 175
>gi|58737085|dbj|BAD89435.1| DNA polymerase mu [Coprinopsis cinerea]
Length = 608
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 100/244 (40%), Gaps = 58/244 (23%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSM 266
N+++ E L G + +Y +A+ VI+ P KI+ + +V LPG+G +
Sbjct: 215 NQDLVEALSVLCRDRELEGLHPNALAYQRAVAVIKSYPHKIDQDNLESEVSKLPGMGGKI 274
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-------------- 312
+QE + G +S+++ ++ +T+S F ++GIGP AQ Y
Sbjct: 275 FSKVQEFLEKGSISEVQETLASDRYQTLSTFATIYGIGPGKAQHFYDMGMRTISDLERYY 334
Query: 313 -------EKGH---------------RTLDDLKNEDSLTHSQR----------------- 333
E+G+ R ++D + + T + +
Sbjct: 335 DIDPPSAEEGYSATSVESMQAVERLLREMEDWGYDVTFTPNGKRVPSKTSKRGNKPPDLT 394
Query: 334 --LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ L + IPR EVE+M ++ + +E+ P + G YRRGK D+D+V
Sbjct: 395 VPVALALRGEFDLPIPREEVEEMRDVVMRELDELQPGCVSTIVGGYRRGKPQSNDVDIVF 454
Query: 392 MHPD 395
H D
Sbjct: 455 SHTD 458
>gi|398010899|ref|XP_003858646.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
gi|322496855|emb|CBZ31925.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
Length = 1480
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 87/269 (32%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S Y + +
Sbjct: 955 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1014
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1015 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1073
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 325
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1074 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1133
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPR-----HEVEQMERLLQKAGEE 364
DS L +QRLGL Y++D+ RIP HE R+ + G++
Sbjct: 1134 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1193
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 1194 Y---ELVVC-GSYRRQVESAGDIDVLITH 1218
>gi|146078013|ref|XP_001463421.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
gi|134067506|emb|CAM65785.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
Length = 1481
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 87/269 (32%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S Y + +
Sbjct: 956 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1015
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1016 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1074
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 325
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1075 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1134
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPR-----HEVEQMERLLQKAGEE 364
DS L +QRLGL Y++D+ RIP HE R+ + G++
Sbjct: 1135 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1194
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 1195 Y---ELVVC-GSYRRQVESAGDIDVLITH 1219
>gi|407395990|gb|EKF27317.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi
marinkellei]
Length = 627
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 63/247 (25%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALLERYKAQSYQIAVDNLKRDDFIFLHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 327
Y+K G +++ +L+ +DS
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHETEKGTGDGDKDGSKCGNSGGAKKGSKKNSAGGDDSVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRLPTS 336
Query: 385 GDLDVVI 391
GD+DV+I
Sbjct: 337 GDIDVLI 343
>gi|332865055|ref|XP_001142751.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Pan
troglodytes]
Length = 457
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|395850044|ref|XP_003797611.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Otolemur
garnettii]
Length = 454
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 163 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHI-------TDPSLLYNPPDLNKNIT 214
T A SE P + + LT +L+ P S H + PS ++ P + T
Sbjct: 88 TAAPSECTPATLLDISWLTESLAAGQPVPMESRHRLEVAEPRKAPPSSIWMPAYACQRPT 147
Query: 215 EIFGKLINIYRAL----------GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+ I++ AL G + S ++ +A V+ LP + + Q++GLP G+
Sbjct: 148 PLTHHNISLSEALETLAEAAGFEGREGHSLTFLRAASVLRALPRPVVALTQLRGLPHFGE 207
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+QE++ G ++E E+ +T+ LF +++G+G TA + Y++G RTLDDL+
Sbjct: 208 HSFRVVQELLEHGVCEEVERVRHSERFQTMKLFTQIFGVGVRTADRWYQEGLRTLDDLRE 267
Query: 325 E-DSLTHSQR 333
+ LT Q+
Sbjct: 268 QPQRLTQQQK 277
>gi|397467155|ref|XP_003805292.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pan
paniscus]
Length = 457
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|198417873|ref|XP_002122503.1| PREDICTED: similar to DNA polymerase mu (Pol Mu) [Ciona
intestinalis]
Length = 486
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 9/172 (5%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS-------MQDHIQEIVTTGKLSKLEH 284
R+ S+ + ++ L K+ +Q+ +P + + + I+EI+ G + E
Sbjct: 164 RALSFRRGSASLKALHHKVTHVEQLANIPYVDSTNSSKIGHCKKVIKEILEEGFSDEAEG 223
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDI 342
E +++ +F ++G+GP T +K Y RTL+D++ E+ L Q +G KY++D+
Sbjct: 224 IANSEFYKSMKIFCGIFGVGPNTERKWFYNLKMRTLEDVRKENVHLNKDQAVGFKYYEDL 283
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ E + +L+Q + + + G +RRGK DLD++I HP
Sbjct: 284 NEPLLLEEANHIAKLVQDTCVALRKDTTVTVVGGFRRGKTKGHDLDLMISHP 335
>gi|392580109|gb|EIW73236.1| hypothetical protein TREMEDRAFT_25387, partial [Tremella
mesenterica DSM 1558]
Length = 258
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I +I+ G + +LE E E++R F V IG A+ + G RT +DL N
Sbjct: 10 IHDILKYGLVPQLE--ELTEEMRATVAFNRVHAIGNIYAKTFAKNGARTFEDLINSTGDE 67
Query: 328 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ +Q+L LKY +++ IPR EV++ + L++ A + P + GSYRRG+ +
Sbjct: 68 YGKKVSKAQKLALKYHHEMEIMIPRQEVDKFDMLIKDALNKADPTIKYEIMGSYRRGEET 127
Query: 384 CGDLDVVIMHPDRKR 398
D+D+V+ H KR
Sbjct: 128 SSDIDMVVWHDSLKR 142
>gi|302404606|ref|XP_003000140.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
gi|261360797|gb|EEY23225.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
Length = 262
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
TA++ Y+KG R LDDL D L+ Q++G+KY+D+ IPR EVE + + + +E
Sbjct: 2 TAREFYKKGWRDLDDLVEYGWDRLSRVQQIGVKYYDEFLQPIPRLEVEAIAATILQQAQE 61
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ P + G +RRGK S GD+DV++ H D
Sbjct: 62 IEPGFQLTIVGGHRRGKKSSGDVDVILSHAD 92
>gi|297680550|ref|XP_002818051.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pongo
abelii]
Length = 457
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|393237267|gb|EJD44810.1| hypothetical protein AURDEDRAFT_124919 [Auricularia delicata
TFB-10046 SS5]
Length = 513
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 49/226 (21%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD- 268
N+ + E + + GE+R SY +AI I+ P + + VK +P +G + +
Sbjct: 204 NQRLIEELAVIRKARKLEGEERSELSYARAIAGIKAQPAEFRTIKDVKDVPFVGAKISNM 263
Query: 269 --------------HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
++E + G++S+ E E+ +++S V GIGP++A++LY +
Sbjct: 264 VRLHRLPLADPDSSQVEEYLDHGRISEAEELRASERYQSLSALTTVHGIGPSSARELYAR 323
Query: 315 GHRTLD------------------------DLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
G R LD D+++ED L R L D++ +IPR E
Sbjct: 324 GLRDLDALYRFYGVVVPDGYGGWVRNEEELDVQDEDGLDSVIREALALRDELNKKIPRQE 383
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396
VE++ + + + + P G Y CG L V+ + PDR
Sbjct: 384 VERIASAIFRELQAIEP------GCFY----TICGGLVVLRLAPDR 419
>gi|304314701|ref|YP_003849848.1| DNA polymerase IV [Methanothermobacter marburgensis str. Marburg]
gi|302588160|gb|ADL58535.1| predicted DNA polymerase IV [Methanothermobacter marburgensis str.
Marburg]
Length = 557
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 20/215 (9%)
Query: 203 LYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVK 257
++N L KN + I ++ + G++ R+ +Y +A +E L IE + +++
Sbjct: 1 MHNIYALMKNHLVAHILNRVADYMELRGDEFRTKAYRRAARTVEFLGEDIEDVAAQGRLR 60
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 316
LPGIG+++ I+EI++TG LS LE + V SL V G+GP T + LYE+ G
Sbjct: 61 ELPGIGENIAAKIEEILSTGSLSLLERLAGEYPVDLDSLLS-VEGVGPKTVKLLYEELGI 119
Query: 317 RTLDDLKNEDSLTHS----------QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366
+TLDDL+ + + + L+ + ++RI R + + L + E+L
Sbjct: 120 KTLDDLEEQARRHRIRRLRGMGEKKEAMILRNIELARSRISRRPLAYVVPLASRIKSELL 179
Query: 367 P-EVI--ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
E + + GS RRG+ + GD+D+++ D R
Sbjct: 180 ELEGVRRVEVAGSIRRGRETVGDIDILVTATDPHR 214
>gi|426356075|ref|XP_004045417.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Gorilla
gorilla gorilla]
Length = 457
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|340053719|emb|CCC48012.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma vivax
Y486]
Length = 1118
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 62/246 (25%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +F KL +I AL E ++ SY A+ +++ +P ++ A+
Sbjct: 618 PDHREKVLTVFQKLSDINIALQERYKAHSYQFALERLKRDDYIYTHLPPHIMPPGVDDAE 677
Query: 255 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ V+ +P IG ++ I EI+TTG L +L + ++ I ++ G+GP TA
Sbjct: 678 RRRRVAAVEAIPNIGDKLKTKIVEILTTGDLEELHGLQAKPVIKAIRELTQIHGVGPRTA 737
Query: 309 QKLYEK-GHRTLDD----LKNEDS------------------------------------ 327
L++K G +T+++ ++ +++
Sbjct: 738 VVLFKKYGLKTVEEVEKRIREQEAAQASSGVAGSDGKTNKGGAKKGRGGKVADGEVPLLQ 797
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCG 385
LT +QR GLKY D RIP EV E L+ + L + + +C GSYRR + G
Sbjct: 798 LTEAQRCGLKYHSDFAQRIPHEEVRLHEAFLKLRLRKYLGKSYELSIC-GSYRRRLPTSG 856
Query: 386 DLDVVI 391
D+DV++
Sbjct: 857 DIDVLL 862
>gi|254582759|ref|XP_002499111.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
gi|186703773|emb|CAQ43463.1| DNA polymerase IV [Zygosaccharomyces rouxii]
gi|238942685|emb|CAR30856.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
Length = 552
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 268
N+ + + L + Y+ G++ RS Y A I++LP +IES Q K + +G S+
Sbjct: 175 NELVIKFLDILAHRYKVKGDNFRSRGYNLAKIGIQRLPHEIESGVQAQKEVSNVGSSIAK 234
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
IQ I+ TG L +E + ++ + +G TA++ G ++ ++ +
Sbjct: 235 KIQTILDTGTLPG--AYESPQFEESLQYLSKCHNVGTYTARRWTNLGLKSFAEVSQK--F 290
Query: 329 THSQR------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
H + G +++D IPR E Q+ER++ + + V P + GSY RG
Sbjct: 291 PHELKTDWPILFGWSFYEDWSIPIPRQECSQIERIVNQELKSVDPACQVEIQGSYLRGAD 350
Query: 383 SCGDLDVVI 391
CGDLD++
Sbjct: 351 YCGDLDMLF 359
>gi|157864821|ref|XP_001681119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
gi|68124413|emb|CAJ02269.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
Length = 673
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 32/166 (19%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
+PG+G +++ + EI+ TG L +L E +R I +V G+GP TA ++K G
Sbjct: 239 IPGLGTKLREKVIEILVTGGLEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGIS 298
Query: 318 TLD------------DLKNEDS----------------LTHSQRLGLKYFDDIKTRIPRH 349
T+ D+ N+DS L +QRLGL Y++D+ RIP
Sbjct: 299 TVAQLRDYAIKAGELDMSNKDSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHE 358
Query: 350 EVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASCGDLDVVIMH 393
E E ++ + L + +++C GSYRR S GD+DV+I H
Sbjct: 359 EGRLHEAFMKLRMRKYLGKDYELVVC-GSYRRQVESAGDIDVLITH 403
>gi|225851436|ref|YP_002731670.1| DNA polymerase beta family [Persephonella marina EX-H1]
gi|225645277|gb|ACO03463.1| DNA polymerase beta family [Persephonella marina EX-H1]
Length = 586
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 203 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES---ADQVKGL 259
+YN +N+++ IF K+ IY L + R+ +Y +A +IE LP I + + ++ +
Sbjct: 1 MYN---INRDLANIFKKMAAIYEFLDDRFRAMAYQRAAHIIEDLPEDIRNYIVSGKLYMI 57
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRT 318
GIG S+ I+E V TGK+ K E +K I L ++ G GP T +K++ E G T
Sbjct: 58 RGIGPSIASKIEEYVKTGKIQKFEELKKQVPEDFIELI-DLPGFGPKTLKKIHDELGIST 116
Query: 319 LDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
++L ++L GL+ ++ K RI E Q+ L++ +
Sbjct: 117 KEELVKALKDGRVEKLEGFGPKKVENMLKGLQMYEISKRRIILWEALQISEYLKEKLKSG 176
Query: 366 LPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKR 398
L E+ I GS RR K + GD+D+++ D+ R
Sbjct: 177 LKEIKKIEVAGSVRRRKETIGDIDILVTAEDKYR 210
>gi|402863620|ref|XP_003896105.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Papio
anubis]
Length = 457
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
Length = 576
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKS 265
N + IF ++ I LGED R +Y +A+ IE LP I + ++ +PGIGK
Sbjct: 3 NAEVCAIFREMAAIMEILGEDPYRIRAYQRAVQNIENLPEDIAVIAARGELTKIPGIGKE 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDD 321
+ I+EI+ TG L K E ++ + L +V GIGP TA+ LYE K L+
Sbjct: 63 LARKIEEILATGTLQKYEELKRKVPPGLVELL-QVPGIGPKTAKLLYERLGVKSLAELEQ 121
Query: 322 LKNEDSLT----------HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
L E L + R G+ ++ R P V + R + E P +
Sbjct: 122 LAKEGKLKGLPGIGAKTEENIRRGIALLRSVEERRPLGLVLPLARAVVNLLREKAPVKRV 181
Query: 372 LCGGSYRRGKASCGDLDVV 390
GS RR K + GD+D++
Sbjct: 182 DLAGSIRRFKETVGDVDIL 200
>gi|154332627|ref|XP_001562130.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134059578|emb|CAM37160.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1438
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 87/269 (32%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + ++F +L I ALGE +S SY + +
Sbjct: 910 PDYRERVVQLFEQLAQINSALGERFKSQSYGRTVEHLKRGDKVFQLLPPNLLPLPEDDPE 969
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+E L +K +SA Q + +PG+G +++ + EI+ TG
Sbjct: 970 KKAAVEAL-YKDDSAAQRRRAEEVERNRAKRSLVLSPDNLIPGLGTKLREKVIEILVTGG 1028
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD-------------DLKNE 325
L +L E +R I +V G+GP TA ++K + D+ N+
Sbjct: 1029 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKHDISTVAQLRDYAIKAGELDMNNK 1088
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPR-----HEVEQMERLLQKAGEE 364
DS L +QRLGL Y++D+ RIP HE R+ + G++
Sbjct: 1089 DSGKPSNLVACSDKSKFHLNDAQRLGLVYYEDMCHRIPHDEGRLHEAFMKLRMRKYLGKD 1148
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 1149 Y---ELVVC-GSYRRQVESAGDIDVLITH 1173
>gi|119480717|ref|XP_001260387.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
gi|119408541|gb|EAW18490.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDSKIAALFAEFKASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRP 458
Query: 350 EVEQMERLLQKAGEEVLP 367
E E + + + V P
Sbjct: 459 ETEAIAATITQHANRVRP 476
>gi|38566017|gb|AAH62590.1| POLM protein [Homo sapiens]
gi|119581528|gb|EAW61124.1| polymerase (DNA directed), mu, isoform CRA_d [Homo sapiens]
Length = 457
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQR 333
T Q+
Sbjct: 273 TQQQK 277
>gi|363748350|ref|XP_003644393.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888025|gb|AET37576.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
Length = 531
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I+E +L GE + +Y A + + + + + LP +G +
Sbjct: 154 NVIISEALQRLATKSNLQGEPFKRRAYMMASAALLECGHPVRTYEDALALPDVGSGIATK 213
Query: 270 IQEIVTTG-KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I ++V G ++ LE + E+ + + F + +GP TA + +++ D+ L
Sbjct: 214 IAQLVANGGRIPGLE-LDLSEQEKILEYFVQCHEVGPTTASQWQALHYKSFKDV-----L 267
Query: 329 THSQRL--------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
TH+++ G+++F++ + R+PR EVE+ ++K + P ++I GSYRRG
Sbjct: 268 THTKQWNLHWSILYGMRFFEEWQLRMPRSEVEEHLEFIRKHAQ---PGLVIEAMGSYRRG 324
Query: 381 KASCGDLDVVI 391
+ CGD+D+++
Sbjct: 325 RKDCGDIDLLV 335
>gi|29825708|gb|AAO92254.1| terminal deoxynucleotidyl transferase isoform 2 [Ambystoma
mexicanum]
Length = 453
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
+++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++L S
Sbjct: 166 DLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNENLKFS 225
Query: 332 --QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q GL++++DI + + E + + +++ A LP+ ++ G +RRG + D+D+
Sbjct: 226 KMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGHDVDM 285
Query: 390 VIMHP 394
+I P
Sbjct: 286 LITSP 290
>gi|345806421|ref|XP_003435430.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like, partial [Canis
lupus familiaris]
Length = 645
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 20/275 (7%)
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
+S E+SH ++ +++T + + D+ S A P+ E + L A+
Sbjct: 11 TSAEEASHWQEHRAATASPQRCSRPALLDISWFTESMAAGQPVPVEC-RHRLEVAAPRKG 69
Query: 192 FSSHHITDPSLLYNPPDL---NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
P P L N +++E L G + R S+ +A V++ LP
Sbjct: 70 LPCPARMLPYACQRPTPLTHHNSSLSEALEMLAEAAGFEGSEGRFLSFRRAAAVLKALPS 129
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ + Q++GLP G+ + +QE++ G ++E E+ +T+ P
Sbjct: 130 PVTALSQLQGLPHFGEHSRRVVQELLEQGVCEEVERVRLSERYQTMK--------APPRE 181
Query: 309 QKLY--EKGH---RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
L+ E+G R K ++ S GL+++ D+ T + R + E + +L++ A
Sbjct: 182 SLLWKREEGRWRARAGGAWKVRRAVLSS---GLQHYRDLSTPVQRPDAEALLQLVKAAVA 238
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKR 398
+LP + G +RRGK D+D+++ HP R
Sbjct: 239 PILPGATVTLAGGFRRGKLQGHDVDLLLSHPQEGR 273
>gi|367010826|ref|XP_003679914.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
gi|359747572|emb|CCE90703.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
Length = 578
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 27/254 (10%)
Query: 163 TNALSEAPNSPMSSESLTNTLSTASASPD--------FSSHHITDPS--------LLYNP 206
N+++E P+ + +S + T + + AS D S ++ PS L +
Sbjct: 129 VNSINEVPSEEVQYKSQSETAAGSHASADKHMDTGENLPSEKLSSPSEVPTERLTRLIDE 188
Query: 207 PDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIG 263
+KN + + G+L Y G+ RS Y A +E+ PF+I S +Q + + +G
Sbjct: 189 DKTSKNELLIKALGRLAKRYDVKGDRYRSRGYKLAKIGVERYPFEILSGEQARREIASVG 248
Query: 264 KSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
S+ IQ I+ TG L L E F+ ++K ++ + + +G +A++ G T ++
Sbjct: 249 SSIARKIQIILDTGGLPGLDEAFDLEKK---LNYYTQCHDVGVYSAKRWNLLGLTTFSEV 305
Query: 323 KN---EDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
E L L G Y++D RI R E E++ ++++ +++ PE + GSY
Sbjct: 306 SKKFPEIFLRDWTVLFGWSYYEDWLKRISRAECEEVLKVVKDNLKQIDPEFKVELQGSYV 365
Query: 379 RGKASCGDLDVVIM 392
RG CGD+D++
Sbjct: 366 RGALECGDIDLLFF 379
>gi|343427145|emb|CBQ70673.1| probable DNA polymerase X-putative [Sporisorium reilianum SRZ2]
Length = 714
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
R+ +F V+GIG A++ G TL+ L++ SL +QR+GLK+ DDI+ IPR E
Sbjct: 452 RSRVMFQRVYGIGATKAERFVHAGFLTLEQLRDA-SLERAQRIGLKHMDDIECLIPRAES 510
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E+ ++ V E+ GS+RRG DLD V+ HP
Sbjct: 511 ERWREVMLDVFRTVDAELGAELLGSFRRGDHYSSDLDFVLFHP 553
>gi|389740563|gb|EIM81754.1| Nucleotidyltransferase, partial [Stereum hirsutum FP-91666 SS1]
Length = 393
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
S+ AI VI+ L + ++S + + L GIG + I + GK K + + +K +
Sbjct: 7 SFQTAINVIKTLDYPLKSGKEAEKLRGIGPKISARIDAFIN-GKGPKTQA-KALKKTKAA 64
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRLGLKYFDDIKTRIPRHEV 351
SLF V G+G ATA KL G ++ D++ D LT +Q++GL Y D + + R +
Sbjct: 65 SLFQTVPGVGYATAMKLVNAGCTSIKDMRKPEYFDMLTPAQKVGLMYIDHLDMPVTREQS 124
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E + ++ + + + I+ GSYRR + D+D+++ HP
Sbjct: 125 ESVADFIR---DHISSKFEIVHSGSYRRKALTSSDIDILLFHP 164
>gi|405117777|gb|AFR92552.1| hypothetical protein CNAG_00419 [Cryptococcus neoformans var.
grubii H99]
Length = 343
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I ++VT + +LE D + + F + GIG A+ E+G TL DL +
Sbjct: 102 IYDLVTKKVIPRLEVL--DNRWNAMVKFNRIHGIGKIRARAFAEEGIETLSDLMIAEGGR 159
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
+++ +Q+L ++Y +++ IPR EVEQ +R+++ A P++ GSYRRG++
Sbjct: 160 FTVSDAQKLAIQYHEEMDVMIPRAEVEQFDRIIKDALRREDPKLDFATMGSYRRGESLSS 219
Query: 386 DLDVVIMH 393
D+DVV+ H
Sbjct: 220 DIDVVVWH 227
>gi|405119609|gb|AFR94381.1| beta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 569
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 29/190 (15%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RRS S K +P +I S + L G+G+ + I E + TG++++ + + +
Sbjct: 234 RRSLSMLKC--ESNSVPRRITSGKEALRLQGVGEKVATRIDEFLQTGEIAESQEILESLR 291
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--------------KNEDSLTHSQRLG 335
+ +F V+ IG A++LYE+ H RTL+D+ K D R G
Sbjct: 292 FNALQIFASVYTIGHFRAKELYERHHCRTLEDVKRHFADMEKDGEAKKGRDKDKRRMRGG 351
Query: 336 LKYFD----------DIKTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASC 384
+K ++ ++ +IPR EVE++ + E +P +CGG YRRGK
Sbjct: 352 MKEYEIVEEWMKLKSELDQKIPRKEVEEIAACVLDNLEAFIPSCEYTICGG-YRRGKTES 410
Query: 385 GDLDVVIMHP 394
D+D+V P
Sbjct: 411 SDVDIVFRPP 420
>gi|113913511|gb|ABI48899.1| POL4 [Saccharomyces pastorianus]
Length = 583
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-ADQVKGLPGIGKSMQD 268
N+ + E +L Y GE R+ Y A +E F I S A+ L IG S+
Sbjct: 189 NELVIEALKRLTKKYEIKGERFRARGYRLAKQSVENCDFDISSGAEAHTKLRNIGPSIAR 248
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK--LYEKGHRTLDDLKNED 326
IQ I+ TG L L E ++ F +G+GP A++ L + K+ D
Sbjct: 249 KIQVILDTGALPGLNDSMGLED--KLNYFKNCYGVGPEIAKRWNLLSYESFCIASKKDPD 306
Query: 327 SLTH--SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
S G Y+DD ++ R+E ++Q A E+ P+ ++ GSY RG + C
Sbjct: 307 DFISDWSVLFGWSYYDDWLHKMSRNECLAHLDVVQNALNEIDPDCLVELQGSYNRGYSKC 366
Query: 385 GDLDVVIMHP 394
GD+D++ P
Sbjct: 367 GDIDLLFFKP 376
>gi|365761819|gb|EHN03448.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 545
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 193 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNKSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 302 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 356
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
>gi|91201380|emb|CAJ74440.1| strongly similar to DNA polymerase beta family [Candidatus Kuenenia
stuttgartiensis]
Length = 578
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 23/206 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N + +FGK+ ++ GE+ R SY KA VIE L IE+ D++ +PGIGK
Sbjct: 3 NHEVALLFGKIADVLELKGENTFRINSYRKAARVIEDLTEDIEALARDDKLTNIPGIGKG 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
D I E +TTGK+SK E K T++L ++ G+GP T L E G L D++N
Sbjct: 63 TADKIIEYITTGKMSKYEEVAKGISEETVALM-QIPGLGPKTVAMLNKELGIVNLVDIEN 121
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQ-----------MERLLQKAGEEVLPEVI 370
+ L +G K ++I I ++ Q ++R++++ + P+V
Sbjct: 122 AIRDGKLKGLFGIGEKKIENIVKGIELYKTSQQRISIGMAYPIVKRIIERLKQN--PKVK 179
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPD 395
I GS RR K + GD+D++ D
Sbjct: 180 EIQAAGSLRRMKETVGDIDILATGND 205
>gi|405120890|gb|AFR95660.1| hypothetical protein CNAG_02160 [Cryptococcus neoformans var.
grubii H99]
Length = 398
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------- 322
IQ ++ G + +LE D+ + + F +V G G A++ E+G R+LDDL
Sbjct: 130 IQNLIEDGVIPELEDL--DDSWKAMIEFHKVQGFGRVKARQYVEEGARSLDDLLSAREGN 187
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ L+ L ++Y + + T IPR EVE+ ++L+++A P++ GSYRRG++
Sbjct: 188 AQKYKLSEPLTLAVRYHNQMSTMIPRSEVEEFDKLIKQALHLADPKISYQILGSYRRGES 247
Query: 383 SCGDLDVVIMH 393
++DVV+ H
Sbjct: 248 ISAEIDVVVWH 258
>gi|443926823|gb|ELU45383.1| fingers domain of DNA polymerase lambda domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 473
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDS 327
I+E + TG +++ E+ + +SL +V G+G A A++ Y G R+L+DL+
Sbjct: 207 IEEYLKTGNIAEARKAAASERFQVLSLLTQVHGVGAAKAREHYAAGRRSLEDLRKFYRAK 266
Query: 328 LTHSQRLG----LKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVIILCGGSYRRGKA 382
+ LG L+ D++ T IPR EVE + + + L +CGG YRRGK
Sbjct: 267 VEAGTHLGIAAALELHDELNTTIPREEVEAIANGVFGELSAVQLGCEYTICGG-YRRGKP 325
Query: 383 SCGDLDVVIMHPD 395
D+D+V HP+
Sbjct: 326 YSNDIDIVFTHPE 338
>gi|212213026|ref|YP_002303962.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
gi|212011436|gb|ACJ18817.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
Length = 594
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 30/211 (14%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I+KLP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDKLPKSVAEMLKEGEDLTE 79
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
A P++ + GS+RR K + GDLD++
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDIL 224
>gi|401838825|gb|EJT42265.1| POL4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 579
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 193 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNRSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 302 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 356
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
>gi|443896495|dbj|GAC73839.1| DNA polymerase IV [Pseudozyma antarctica T-34]
Length = 570
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 33/213 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI----ESAD----------- 254
N+ + E + N R G+ +Y +AI ++ PF I AD
Sbjct: 213 NQMLVEQLELIRNERRLTGDTYAEMAYMRAISALKAYPFHIPDSVTDADFSAELRDLRLA 272
Query: 255 QVKGLPGIGKSMQDHIQEIVTT-----GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+V+ L G+GK + +++ + ++ + + ++D V ++ F E++GIGP A+
Sbjct: 273 EVEKLKGVGKKVFSLVRQFYHSTSTQEARIVEAKVIQRDRAVFVMNAFAELYGIGPIGAR 332
Query: 310 KLYEKGHRTLDD-LKNEDSL-TH-SQRLGLKYFDDIKTRIPRHEVE----QMERLLQKA- 361
+ Y G R+ D L+ + SL TH S + ++ D++ I R E E ++ RLL +
Sbjct: 333 EAYNAGARSFRDVLERKKSLATHLSAKESVRILADLRQPIGRVECESIADEIMRLLTQLM 392
Query: 362 -GEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
G EV ++ CGG YRRGK DLD++I H
Sbjct: 393 RGAEVRWQI---CGG-YRRGKPRTYDLDIIIGH 421
>gi|408383066|ref|ZP_11180605.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
gi|407814174|gb|EKF84806.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
Length = 566
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 30/210 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 266
N + I ++ + G D R+ +Y +A IE L + + +++ LPGIGK +
Sbjct: 3 NHKVASILQQVADYLELDGVDFRTKAYRRAAHTIETLSVDVADMQKQGKLEELPGIGKHI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
+ I+EI+ TG L LE+ K E + +V G+GP + LY E G + LDDL+ E
Sbjct: 63 HEKIEEILETGNLEYLENL-KSEFPLDMDALMQVEGLGPKKIKLLYQELGIKNLDDLEKE 121
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 373
H +RL + T+ ++ +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRL-----KGMGTKTEAEILQNIEFARKSIGRQLLGDVLPLAIEIKQRISTLDT 176
Query: 374 ------GGSYRRGKASCGDLDV--VIMHPD 395
GS RR K + GD+D+ V HPD
Sbjct: 177 VDQVQIAGSIRRRKETVGDIDILTVTQHPD 206
>gi|188997236|ref|YP_001931487.1| PHP domain-containing protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932303|gb|ACD66933.1| PHP domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 582
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 22/210 (10%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK + +IF + +IY L + R+ +Y KA ++E LP I + ++ + GIG
Sbjct: 4 NINKELAKIFKNMSHIYEFLDDKFRALAYVKAAQILEDLPDDIRNYIATGKINDIRGIGS 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTFDKILEYIKTGKIQKYEELKKLIPEDFLELM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 324 NEDSLTHSQRLGLKYFDDIKTR-----IPRHEVEQMERLLQKA---GEEVLPEVI----- 370
++L + LK F + K + + +E + LL +A GE +L ++
Sbjct: 123 --EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLLLWEALQIGETLLAKLKQLKEI 180
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
I GS RR K + GD+D++I D+ R
Sbjct: 181 KNIELAGSLRRRKETIGDIDILISCDDKDR 210
>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
Length = 580
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N + E+F + ++ L EDR R +Y +A I LP + + +++ +PG+GK+
Sbjct: 7 NHEVAEMFSAIADLMEILDEDRFRVQAYRRASDAIRDLPAPLATYRDRGELEAIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I E++ TG+L ++ L V G+GP TA +LY E G +L +LK
Sbjct: 67 IAGKISELLDTGELQYYNRLQEKAPPGVRELL-RVPGVGPRTAGRLYRELGITSLAELKR 125
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC-------- 373
E L + G K + I I E ++ LL A E E +IL
Sbjct: 126 AAEEGRLATLKGFGAKMIEGILQGISVAERQERRMLLAHALETA--EELILALRTAAPTL 183
Query: 374 -----GGSYRRGKASCGDLDVVIMHPD 395
GS RRG+ + GDLD+++ D
Sbjct: 184 RQATYAGSLRRGRPTVGDLDILVAADD 210
>gi|301615444|ref|XP_002937182.1| PREDICTED: hypothetical protein LOC100495475, partial [Xenopus
(Silurana) tropicalis]
Length = 913
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ ++ F L + R ++ +A +I+ LPF I + +V+ LP +G M+
Sbjct: 592 DTNRCFSDAFDILAEYFEFSENKGRKVAFLRASSLIKSLPFPITAMKEVERLPWLGDQMK 651
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ GK K+ +E+ ++ + ++ G
Sbjct: 652 AIIEEILEEGKSYKVLELMSEERYKSFK------------RKIVFITGRM---------- 689
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
Q LG Y++DI + + E E ++L++ + +P+ ++ G +RRGK + D+
Sbjct: 690 ---CQMLGFLYYEDITSSVSWAEAETTDQLIKSIVWKFVPDAVVTLTGGFRRGKKNGHDV 746
Query: 388 DVVIMHP 394
D++I P
Sbjct: 747 DIIITCP 753
>gi|237755558|ref|ZP_04584176.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692291|gb|EEP61281.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 582
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK + +IF + +IY L + R+ +Y +A +IE LP I + ++ + GIG
Sbjct: 4 NINKELAKIFNNMSHIYEFLDDKFRALAYARAAQIIEDLPDDIRNYVATGKINDIRGIGS 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTVDKILEYIKTGKIQKYEELKKLIPEDFLDLM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEV 369
+L GL+ ++ K R+ E Q+ E LL K + L E+
Sbjct: 123 EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLILWEALQIGETLLAKLKQ--LKEI 180
Query: 370 I-ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
I GS RR K + GD+D+++ D+ R
Sbjct: 181 KNIELAGSLRRRKETIGDIDILVSCDDKDR 210
>gi|134106753|ref|XP_777918.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260618|gb|EAL23271.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 264
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I ++VT + +LE D+K + + F + G G A+ E+G TL+DL +
Sbjct: 15 IYDLVTKKFVPRLEAL--DDKWKAMVKFNRIHGFGKIRARAFAEEGIETLNDLMIAEGGR 72
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
S++ +Q+L ++Y +++ IPR EVE+ + +++ A P++ GSYRRG+
Sbjct: 73 FSISEAQKLAIQYHEEMDVMIPRAEVEEFDGIIKDALRREDPKLNFAIMGSYRRGENLSS 132
Query: 386 DLDVVIMH 393
D+DVV+ H
Sbjct: 133 DMDVVVWH 140
>gi|47228542|emb|CAG05362.1| unnamed protein product [Tetraodon nigroviridis]
Length = 451
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
ED R ++ +A V++ LP + ++KGLP +G + ++ I +GK +++E ++
Sbjct: 25 EDGRGIAFRRAEAVLKALPRAVRKLTELKGLPCLG---EHSLRIIKASGKAAEVEATKQS 81
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIP 347
E+ + + L ++G+G TA + G L L++ +L +Q+ GL++++D+ +
Sbjct: 82 ERYKALKLLTGIFGVGAKTADRWITMGIYNLQQLQSSGPTLNQAQQAGLEHYEDLNQPVT 141
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
R E + + ++++ VLP + G +RR
Sbjct: 142 RAEADHIGEIVRRVVLCVLPGAQLTLIGGFRR 173
>gi|71004160|ref|XP_756746.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
gi|46096015|gb|EAK81248.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
Length = 616
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 151/356 (42%), Gaps = 48/356 (13%)
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+Q+ ++ L ++ V+ QWL+ V DL+ + I D ++ +
Sbjct: 122 RQLGEEVLRDWRRFVVTPQWLDAVKAEARLVDPDLFAVV------AIKDES-KTLESKPS 174
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP 190
+SD + H H A + LS +P +S S + + + P
Sbjct: 175 ATSDRKRKHSPSGSPLLAPSHH--ASPPAVLRRKHLSSSPTPTTASSSYYDAIYPPAPCP 232
Query: 191 DF--SSHHITDPSLLYNPPDLNKN-ITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKL 246
+ + + PS L++P N+ ITE+ +LI R L D S +Y +AI ++
Sbjct: 233 RWQNTRYACRRPSPLHSP---NQALITEL--ELIRTERRLTGDTYSEMAYMRAISALKAF 287
Query: 247 PFKIES-----------------ADQVKGLPGIGKSMQDHIQEIVTTG-----KLSKLEH 284
PF I +V+ L G+GK + I++ + ++ + +
Sbjct: 288 PFPIPDRILDPPEVFDPALLELRLSEVEKLKGVGKKVFSLIKQFYASENKSGERIVEAKV 347
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDD 341
+D V ++ F E++GIGP A++ Y G R+ D+ + + TH S + ++ D
Sbjct: 348 IARDPAVYIMNAFTELYGIGPIGAREAYNSGARSFSDVLHRGKSLATHLSVQESVRILAD 407
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPEVI----ILCGGSYRRGKASCGDLDVVIMH 393
++ I R E + + +L + + +CGG YRRGK S D+D++I H
Sbjct: 408 LRKPIGREECRSITAHIMALVRSMLADDVEVKYEICGG-YRRGKESTYDVDIIIGH 462
>gi|209364119|ref|YP_001424924.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212218905|ref|YP_002305692.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
gi|215918974|ref|NP_819524.2| DNA polymerase X family/PHP domain-containing protein [Coxiella
burnetii RSA 493]
gi|206583859|gb|AAO90038.2| DNA Polymerase X family [Coxiella burnetii RSA 493]
gi|207082052|gb|ABS78173.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212013167|gb|ACJ20547.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
Length = 594
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 30/211 (14%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 79
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
A P++ + GS+RR K + GDLD++
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDIL 224
>gi|161830379|ref|YP_001596420.1| DNA-binding/PHP domain-containing protein [Coxiella burnetii RSA
331]
gi|164686005|ref|ZP_01947535.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
gi|161762246|gb|ABX77888.1| putative DNA-binding/PHP domain protein [Coxiella burnetii RSA 331]
gi|164601535|gb|EAX31846.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
Length = 578
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 30/211 (14%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 4 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 63
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 64 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 122
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 123 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 182
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
A P++ + GS+RR K + GDLD++
Sbjct: 183 A-----PDIKKVDIAGSFRRRKETVGDLDIL 208
>gi|170090083|ref|XP_001876264.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649524|gb|EDR13766.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE-IVTTGKLSKLEHFEKDE-KVR 292
++ AI VI L + I S QV + GIG + + I + ++ G L+ +K+ + R
Sbjct: 76 AFVNAIKVISNLDYPIHSGKQVSAIHGIGAGIANRINDFLIEEGHLND----QKEALQTR 131
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S + GIG A+ L + G + DL K L+ +Q +G+KY ++ + R
Sbjct: 132 ALSELLRIPGIGRIKAKALVDAGCMGIADLVAQKYTHLLSPTQLIGIKYMKHLERPVRRE 191
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +Q+ L+ E + P+ I+ G +RRG ++ ++ V+++HPD
Sbjct: 192 EADQVIDFLR---ENLCPKYEIIVVGDHRRGASTSLEISVILLHPD 234
>gi|154300650|ref|XP_001550740.1| hypothetical protein BC1G_10913 [Botryotinia fuckeliana B05.10]
Length = 461
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I P+ + S +++ LPG + + + + + + TG ++ FE++ +++ +
Sbjct: 171 AYSTSIASIAAYPYPLHSPNELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVL 230
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 351
F +WG+ TA++ + ++ + LDD+ E + L Q++G+KY++++ T IPR E
Sbjct: 231 KTFYNIWGVADITAREFHDQREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCET 290
Query: 352 EQMERLLQKAGEEVLP 367
E + ++ + P
Sbjct: 291 EAIGSIILSEARRIDP 306
>gi|449018861|dbj|BAM82263.1| similar to DNA polymerase lambda [Cyanidioschyzon merolae strain
10D]
Length = 715
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ-RLGL 336
L +L F + + ++LF VW A + Y G +TL+++ + LT + +LG+
Sbjct: 272 NLLELRTFRDESAAQALTLFHCVWHAKRIRAMQWYHAGCKTLEEVASRCRLTDKRFQLGI 331
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI----- 391
Y+DD + +P EV + + A E+ ++ ++ G+ RR CGD+D+++
Sbjct: 332 LYYDDFRLLVPYGEVAAITSIFASASTEIDADLSVIPVGALRRNYQECGDVDLIVTGEPE 391
Query: 392 -MHPDRKR 398
+HPD +R
Sbjct: 392 TLHPDGER 399
>gi|113913509|gb|ABI48898.1| POL4 [Saccharomyces cariocanus]
Length = 582
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 268
N+ + +L Y GE R+ SY A +E F I S ++ L IG S+
Sbjct: 188 NELVIAALKRLTKKYEIKGEKFRARSYRLAKQSLENCDFNISSGEEAHIKLRNIGPSIAR 247
Query: 269 HIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
IQ I+ TG L L + ++K++ F +GIGP A++ +L N +S
Sbjct: 248 KIQVILDTGVLPGLNDSMGLEDKLK---YFKNCYGIGPEIAKRW---------NLLNFES 295
Query: 328 LTHSQR-------------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
+ + G Y+DD ++ R+E +Q A E+ PE +
Sbjct: 296 FCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFAHLEKVQNALSEIDPECQVELQ 355
Query: 375 GSYRRGKASCGDLDVVIMHP 394
GSY RG + CGD+D++ P
Sbjct: 356 GSYNRGYSKCGDIDLLFFKP 375
>gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase X protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 550
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 18/203 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSM 266
N + I ++ + G++ R+ +Y +A +E L IE + +++ LPGIG+++
Sbjct: 3 NHLVAHILNRVADYMELAGDEFRTKAYRRAARTVEFLNEDIEEVAARGRLQELPGIGRNI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+EI++TG L LE ++ V SL V G+GP T + LYE+ G +TL DL+ +
Sbjct: 63 AGKIEEILSTGSLQLLERLSEEYPVDLDSLL-SVEGVGPRTVKLLYEELGIKTLADLEEQ 121
Query: 326 DSLTHS----------QRLGLKYFDDIKTRIPRHEVEQMERLLQ--KAGEEVLPEVI-IL 372
+ + L+ + ++RI R + + L KAG L V +
Sbjct: 122 ARRHRIRRLRGMGEKREAMILRNIELARSRISRRPLAYVVPLASRIKAGLLELEGVQRVE 181
Query: 373 CGGSYRRGKASCGDLDVVIMHPD 395
GS RRG+ + GD+D+++ D
Sbjct: 182 VAGSIRRGRETVGDIDILVTATD 204
>gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
Length = 546
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 30/210 (14%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 264
NK I +I K ++ GE+ + +Y A ++E ++ + LPGIG
Sbjct: 4 NKQIADILSKTADLMEIKGENPFKVRAYRNAARILENSAKDFSKLVKEGFDLTKLPGIGH 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ ++I+EIV TGK KLE +K+ + L + G+GP ++LYE G + +DDLK
Sbjct: 64 DLSEYIKEIVNTGKFHKLEELQKEIPKGVVELLS-IEGLGPKRVKQLYETFGIKNMDDLK 122
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQM-----ERLLQKAGEEV 365
+L G+K R EVE + LL+ G E
Sbjct: 123 KYAYSGELDKLPGFGPKLIEKILKGVKQLKKAGIRFLWAEVEDTANELKDYLLEFEGVET 182
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS+RR K S GDLD++++ D
Sbjct: 183 VD-----IAGSFRRKKESVGDLDILVIAKD 207
>gi|307110951|gb|EFN59186.1| hypothetical protein CHLNCDRAFT_138090 [Chlorella variabilis]
Length = 433
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
A+ V+ +L + +ESA V+ L G+G + I+ TG ++ + + K++ + LF
Sbjct: 300 ALWVLGRLTYPLESACDVEQL-GLGPKTTAKLCSILRTGTCHQVLAAQLNSKLQELRLFM 358
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQME 355
V G+G TA+ + TL+D++ LT Q++GL++F D++ ++PR EV Q E
Sbjct: 359 SVMGVGEQTAKHWVAQNCYTLEDVRRRQQDLGLTQGQKVGLRHFGDMQHKVPRMEVAQAE 418
Query: 356 RLLQKAGEEVLPEVI 370
++Q+ E++ ++
Sbjct: 419 AIVQERCFELIERLL 433
>gi|323508140|emb|CBQ68011.1| related to DNA polymerase mu [Sporisorium reilianum SRZ2]
Length = 612
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 31/202 (15%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESA-----------------DQVKGLPGIGK 264
N R G+ +Y +AI ++ PF I +V+ L G+GK
Sbjct: 262 NERRLTGDTYSEMAYMRAISALKAYPFPIPDPVLDPPHVFDAALLAVRLGEVEKLKGVGK 321
Query: 265 SMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+ I++ + G++ + + +D V ++ E++GIGP A++ Y G R+
Sbjct: 322 KVFSLIRQFYSRCEAGAGGRIVEAKVIRRDRAVYVMNALTELYGIGPIGARQAYNAGARS 381
Query: 319 LDDL--KNEDSLTH-SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP---EVII- 371
D+ + + TH S + ++ D++ I R E + + VLP EV
Sbjct: 382 FADVLHRGKSLATHLSAKESVRILGDLRKPIGRDECRAITEDIMTLVRSVLPHDAEVKYE 441
Query: 372 LCGGSYRRGKASCGDLDVVIMH 393
+CGG YRRGKA DLDV+I H
Sbjct: 442 ICGG-YRRGKAHTFDLDVIIGH 462
>gi|388858580|emb|CCF47930.1| related to DNA polymerase mu [Ustilago hordei]
Length = 648
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 43/233 (18%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------ 253
PS L++P N+ + ++ R G+ +Y +AI ++ PF+I
Sbjct: 266 PSPLFSP---NQPLIAELEQIRTERRLTGDTYSEMAYMRAISALKAYPFRIPDPLLDPAG 322
Query: 254 -----------DQVKGLPGIGKSMQDHIQEI---------------VTTGKLSKLEHFEK 287
+V+ L G+GK + I++ V G++ + + ++
Sbjct: 323 IYDRQLLEMRLGEVEKLKGVGKKVFSLIKQFYSLPAGLGEEEKRNRVEEGRIIEAKVIKR 382
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDDIKT 344
D V ++ F E++GIGP A++ Y G R+ D+ + + TH S R ++ D++
Sbjct: 383 DRAVYVMNSFTELYGIGPIGAREAYNSGARSFADVLDRGKSLATHLSARESVRILSDLRK 442
Query: 345 RIPRHEVEQMERLLQKAGEEVLPEVII----LCGGSYRRGKASCGDLDVVIMH 393
I R E + + VL + + +CGG YRRGK DLD++I H
Sbjct: 443 PIGREECRSITAHIMDLVRSVLGDGVQVKHEICGG-YRRGKTQTYDLDIIIGH 494
>gi|126179729|ref|YP_001047694.1| phosphotransferase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862523|gb|ABN57712.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
Length = 543
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 266
N+++ E + + GEDR R +Y +A I++L F + D+ + +PGIG +
Sbjct: 10 NRDVAERLAFMARLLGIAGEDRYRIAAYERAARQIDRLSFPVAGLDEEELTRIPGIGDRI 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+EI TG +L+ + + + G V G+GP T LY++ G R+LDDL+
Sbjct: 70 AGQIREIAATGTFGELKDLQATIPGSVVEMLG-VAGLGPRTLHILYKRLGIRSLDDLERA 128
Query: 326 DSLTHSQRL----GLKYFDDIKTRIP--RHEVEQMER----LLQKAGEEVLPEVIILCGG 375
H R+ G K + IK I R +M R + LP+ G
Sbjct: 129 VK-GHRLRVLSGFGSKKEEAIKRGIAQFRQRSNRMTRPQAEAVLAYVAAALPDGRYTVAG 187
Query: 376 SYRRGKASCGDLDVVI 391
SYRRG ++ G L++V+
Sbjct: 188 SYRRGSSTVGRLEIVV 203
>gi|58261266|ref|XP_568043.1| beta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57230125|gb|AAW46526.1| beta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 556
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 338
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 339 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 391 IMHP 394
P
Sbjct: 409 FRPP 412
>gi|134115703|ref|XP_773565.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256191|gb|EAL18918.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 556
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 338
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 339 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 391 IMHP 394
P
Sbjct: 409 FRPP 412
>gi|13879400|gb|AAH06681.1| Polb protein [Mus musculus]
Length = 111
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
+ I E + TGKL KLE +D+ +I+ V GIG
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIG 107
>gi|401888944|gb|EJT52888.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 2479]
gi|406697654|gb|EKD00910.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 8904]
Length = 605
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 26/181 (14%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S ++ + L +G + + I E + TG++S+ E+ +
Sbjct: 273 LSYRRSMAILKSVPRRIRSGEEAQTLVDVGGKVANRIDEYLATGQISESASILASERYKA 332
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDL---------------------KNEDSLTHSQ 332
+ LF V+ IG TA +L++ G RTLDD+ + E ++T +
Sbjct: 333 LRLFSSVFTIGTHTAVQLWDAGCRTLDDVLQHYDWTPPSTPKEERKARKRRMEGTMTKPE 392
Query: 333 --RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+K D + P+ +V + L+++ + + P+ + G +RRGK GD+DV+
Sbjct: 393 IVHAWVKLRDQLDQ--PK-DVAAISSLVREHLQALRPDTQQVIAGGFRRGKQDTGDVDVI 449
Query: 391 I 391
Sbjct: 450 F 450
>gi|410721408|ref|ZP_11360745.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
gi|410598990|gb|EKQ53550.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
Length = 566
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 32/211 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 266
N + I ++ + G D R+ +Y +A +E L I + +++ LPGIGK +
Sbjct: 3 NHKVASILHRVADYLEMDGVDFRTKAYRRAAHTVETLSIDIADIQKQGKLEELPGIGKHI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L LE+ K+E + V G+GP + LY E G + LDDL+ E
Sbjct: 63 HGKIEEILDTGSLEYLENL-KEEFPLDLDALMSVEGLGPKKIKLLYHELGIKNLDDLERE 121
Query: 326 DSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC----------- 373
H +RL G+ + K + +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRLKGMGAKTEAKI------LHNLEFARKGIGRQLLGDVLPLASEIKERISALD 175
Query: 374 -------GGSYRRGKASCGDLDV--VIMHPD 395
GS RR K + GD+D+ V HPD
Sbjct: 176 VVDQAEIAGSIRRRKETVGDIDILTVTKHPD 206
>gi|71411546|ref|XP_808017.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70872136|gb|EAN86166.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 332
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 63/235 (26%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVNATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 327
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRR 379
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRR 331
>gi|219850796|ref|YP_002465228.1| PHP domain-containing protein [Methanosphaerula palustris E1-9c]
gi|219545055|gb|ACL15505.1| PHP domain protein [Methanosphaerula palustris E1-9c]
Length = 562
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 228 GEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 284
GED R ++ +A IE L P + +QV +PGIG I+E+ + S L+
Sbjct: 23 GEDPFRVRAFQRAAMAIEGLGEPVCSMAPEQVLAVPGIGPHTAAQIRELCAGEESSLLQD 82
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHS----QRLGLKYF 339
++ I+L E+ +GP T +L+ E G T++DL+ +L H + G K
Sbjct: 83 LQQSIPASVIALL-ELDQVGPKTVHRLWHELGISTIEDLEKA-ALAHQVSTLKGFGAKKE 140
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------CGGSYRRGKASCGDLDVV 390
+++ I RH R+ + A E VL EV L GSYRRG+A+ GD+D+V
Sbjct: 141 EELVKAIARHR-RSTGRMTRVAAEAVLREVTALLVEGTYTIAGSYRRGRATIGDIDIV 197
>gi|422294312|gb|EKU21612.1| DNA polymerase lambda subunit, partial [Nannochloropsis gaditana
CCMP526]
Length = 281
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-CGGSYRRGKASCGD 386
L +QR+GL+Y+++ + RIPR EV ++E +++A E + P V +L GSYRRG + CGD
Sbjct: 56 LNENQRVGLRYYEEFQERIPRSEVRKIEERVREATEALYPGVFMLTTCGSYRRGASHCGD 115
Query: 387 LDVVI 391
+D+++
Sbjct: 116 VDILL 120
>gi|443694526|gb|ELT95637.1| hypothetical protein CAPTEDRAFT_213338 [Capitella teleta]
Length = 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+ R+ ++ + + I L I+ +KGLP IGK ++ +Q+I+ TG H E+ E
Sbjct: 156 NSRALAFRRGMCTIASLENPIKRWSDIKGLPHIGKHIELVVQDILETG------HSEEAE 209
Query: 290 KVRTISLF---GEVWGIGPATAQKLYEKGHRTLDD-LKNEDSLTH-SQRL--GLKYFDDI 342
+++ F V+G+GP+TAQK + G R + D +++ D H +RL GL + D+
Sbjct: 210 CIQSSVWFKVVDGVFGVGPSTAQKWFNAGFRNICDVIQSSDVQNHRDERLLYGLAFHADL 269
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR--GKASCGDL 387
+ + E E L++K + PE + G + G +C ++
Sbjct: 270 NIPVCKSEAVFWEDLVKKELAAIDPEATVTLTGGFSSYGGIGTCTNI 316
>gi|217967981|ref|YP_002353487.1| PHP domain-containing protein [Dictyoglomus turgidum DSM 6724]
gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
Length = 580
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIAALLEIKGENKYKIAAYQEAARRIENLPEDIERLFKQGKLYQIKGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 323
+ I+E +TTGK+S LE K+ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVSYLEELRKEIPPEILELL-KIPGIGPKLAYRLYAELGIKDIDSLEK 121
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 370
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAKEGKIRVLPRLGPKVEQNILEAIKEYREKQTVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
I+ GS RR K + GD+D++I D R
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSDMDR 211
>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 584
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 30/205 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N ++ IF ++ + GE+ +Y +A VIE LP ++ + + +K LPGIG+
Sbjct: 7 NADMAGIFEQMADFLEIRGENPFKIRAYRRAAQVIEHLPREVATMLAEGEDLKALPGIGE 66
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
++ + E+V TG L E +D +S E+ GIGP TA +L E G ++D+L+
Sbjct: 67 AIASKMAELVRTGHLVAWETL-RDSLPEGLSTLLEIPGIGPKTAYRLATELGISSVDELE 125
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--------EEVLPEVIIL 372
E + H RLG + +I H + M R Q+ EE+L + L
Sbjct: 126 QAILEGKVAHLFRLGDRTAQNIL-----HSIRSMRRKDQRIPLGQALPIVEEILSALRPL 180
Query: 373 CG-------GSYRRGKASCGDLDVV 390
G GS RR + + GD+D++
Sbjct: 181 PGVRNLVPAGSLRRFRETLGDIDLM 205
>gi|349576753|dbj|GAA21923.1| K7_Pol4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 581
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQEDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFAHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|330506782|ref|YP_004383210.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
gi|328927590|gb|AEB67392.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
Length = 577
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 21/200 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ I I ++ + E+R + +Y +A IE L IE +++G+PG+GK+
Sbjct: 7 NREIAGILYQMAELLELHAENRFKIIAYSRAARAIESLTEDIEQVCRDGRLEGIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKN 324
+ + I+E + TG++ + D L ++ G+GP T L+EK T LD+L+
Sbjct: 67 IAEKIKEYLRTGRIQSHQDLLADTPQGLAELL-QISGLGPKTVFMLHEKLDITNLDELEK 125
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------- 374
E + R+G+ +I I R+ ++ R+L E ++ E++ G
Sbjct: 126 AAREHRIRRLPRMGVVREKNILKSIERYR-KRSNRILYSTAESIVDEILTYLGGIEGLEH 184
Query: 375 ----GSYRRGKASCGDLDVV 390
GSYRR K + GD+D++
Sbjct: 185 ATAAGSYRRRKETVGDIDIL 204
>gi|380487421|emb|CCF38050.1| hypothetical protein CH063_09247 [Colletotrichum higginsianum]
Length = 607
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 36/161 (22%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I + P+ I + +V LPG G + + E +G+L +++ + D ++ +
Sbjct: 264 AYSTSIATLSAYPYAIATPQEVARLPGCGVKVAELWHEWKESGRLCEVDEAQADPRLSVV 323
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
F ++WG+G TA+ Y + D + L H++ + +
Sbjct: 324 KKFYDIWGVGDITARDFYNRVESIADTI-----LVHARNINPGF---------------- 362
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E++I+ G YRRGK GD+DVVI H D
Sbjct: 363 -------------ELVIV--GGYRRGKQGSGDVDVVISHRD 388
>gi|10383782|ref|NP_009940.2| Pol4p [Saccharomyces cerevisiae S288c]
gi|46397824|sp|P25615.4|DPO4_YEAST RecName: Full=DNA polymerase IV; Short=POL IV
gi|14588928|emb|CAA42331.2| DNA polymerase [Saccharomyces cerevisiae]
gi|256271878|gb|EEU06905.1| Pol4p [Saccharomyces cerevisiae JAY291]
gi|285810707|tpg|DAA07491.1| TPA: Pol4p [Saccharomyces cerevisiae S288c]
gi|290770666|emb|CAY78217.2| Pol4p [Saccharomyces cerevisiae EC1118]
Length = 582
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|392300802|gb|EIW11892.1| Pol4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 589
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|238577033|ref|XP_002388251.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
gi|215449367|gb|EEB89181.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
Length = 332
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG--IGKSMQ 267
N+++ I GK + + + S+ +AI V+ L I A+ VK L G IG S+Q
Sbjct: 15 NRHVQPIKGKEVEEESPVRNPYKVRSFQRAINVVGGLDKPIGKAEDVKALKGLGIGSSIQ 74
Query: 268 DHIQEIV----TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL- 322
I +++ T K+ E + K+ +V IGP A++L KG ++DDL
Sbjct: 75 KRIVDLLNGNYTPRKVDPEERKNEQRKLLIRLELEKVPYIGPTAAEQLVNKGCESIDDLL 134
Query: 323 --KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYR 378
K L +QR+G+K++ ++ + R E E + L++ E +P +I+C GSYR
Sbjct: 135 RKKYFIELKPTQRIGVKFYQHLQQPVVREEAEAIAELVR----ETMPADGDVIIC-GSYR 189
Query: 379 RGKASCGDLDVVIMHP 394
R + ++I HP
Sbjct: 190 RNFPIASSVVLLIQHP 205
>gi|151943833|gb|EDN62133.1| DNA polymerase IV [Saccharomyces cerevisiae YJM789]
gi|190406448|gb|EDV09715.1| DNA polymerase IV [Saccharomyces cerevisiae RM11-1a]
gi|207347327|gb|EDZ73534.1| YCR014Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|365766764|gb|EHN08257.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 582
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 187
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 248 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 305
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 306 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 352
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|323349577|gb|EGA83798.1| Pol4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 600
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 187
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 248 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 305
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 306 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 352
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|323356006|gb|EGA87813.1| Pol4p [Saccharomyces cerevisiae VL3]
Length = 547
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 187
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 248 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 305
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 306 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 352
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|393237285|gb|EJD44828.1| hypothetical protein AURDEDRAFT_124929 [Auricularia delicata
TFB-10046 SS5]
Length = 551
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG----------- 258
N+ + E + N + GE+R SY +AI I+ P + + +K
Sbjct: 262 NQRLIEELAVIRNARKLEGEERSELSYSRAIASIKAQPAEFRTIKDIKARLLLVPYLLFP 321
Query: 259 ------LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
+P +G + + I+E + G++S E E+ R++S V GIGP +A++LY
Sbjct: 322 HLSAQDVPFVGAKISNMIEEFIDHGRISDAEELRASERYRSLSALTTVHGIGPTSARELY 381
Query: 313 EKGHRTLDDL 322
+G R+LD L
Sbjct: 382 ARGLRSLDAL 391
>gi|13541687|ref|NP_111375.1| family X DNA polymerase [Thermoplasma volcanium GSS1]
gi|14325087|dbj|BAB60012.1| DNA-dependent DNA polymerase family X [Thermoplasma volcanium GSS1]
Length = 516
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 28/207 (13%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESA------DQVKGL 259
+N++I IF ++ + A GE + F +Y KA I + +E+ D + +
Sbjct: 2 INQDIARIFTEIAYLLEAAGEQKSQFEANAYLKASRAISSMQEDLETIYEKGGKDALLSI 61
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318
PGIGK + D I E + +G + K E +K + ISL ++ G+GP LY+ G
Sbjct: 62 PGIGKGIADKIVEYINSGSIQKYEDLKKKYPIDFISLM-KIEGLGPKKLAVLYQALGITN 120
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL-----LQKAGEEVL------- 366
+++L+N L H R G+ F + +E ER+ + KA E L
Sbjct: 121 VEELRNA-ILNHKVR-GIPGFGEKSENQLLKNIEMAERVSERIPIWKAYPEALRIKNYLE 178
Query: 367 ---PEVIILCGGSYRRGKASCGDLDVV 390
+I+ GS RR K + GD+D++
Sbjct: 179 STGYALIVEIAGSTRRMKETIGDIDIL 205
>gi|307107168|gb|EFN55412.1| hypothetical protein CHLNCDRAFT_52641 [Chlorella variabilis]
Length = 691
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 226 ALGE---DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
ALG+ + +S +Y A V+ +++ Q LP + S + + EI+ TG KL
Sbjct: 156 ALGKQVVNHKSLAYAHAAAVVRTCAYRLSPPLQPGRLPYLADSTAEEVSEILLTGTCDKL 215
Query: 283 EHFEKDEKVR--------------TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-- 326
E F +DE VR T F + G+G +TA+K + +G T +D++
Sbjct: 216 ERFRRDEAVRDSKGVLRLDSAGAATRRRFARLVGVGASTARKWWGRGLSTCEDVEAAAAG 275
Query: 327 ---------SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+LT +QR GL+Y D+ I ++ +M + ++
Sbjct: 276 QAASWQPPLALTAAQRFGLRYRRDLLEGISAQDLAEMRQAVE 317
>gi|384485891|gb|EIE78071.1| hypothetical protein RO3G_02775 [Rhizopus delemar RA 99-880]
Length = 217
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 207 PDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
P+ NK + + L+ R L GE+ R+ SY I ++ P + S + + + G+G
Sbjct: 80 PNYNKRLICLLS-LVEQSRELEGENIRAASYAHVISALKTYPRPLGSIKEAEKIIGVGVR 138
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
++ IQ+ + TG + + E E+ RT LF +GP TA+ ++ G+RTL ++ +
Sbjct: 139 IRQKIQQFLETGTIEEAEGLRHSEEFRTRRLF----RVGPVTAKIWWDVGYRTLQEVFDN 194
Query: 326 DSLTHSQRLGLKYF 339
LT + RLG++ F
Sbjct: 195 AQLTSTVRLGIQLF 208
>gi|167537826|ref|XP_001750580.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770876|gb|EDQ84553.1| predicted protein [Monosiga brevicollis MX1]
Length = 499
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 46/178 (25%)
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
++I AL ED + Y I + + KI + D ++ LP IG I++I+ TG L
Sbjct: 215 VHILSAL-EDMKELLYDPRIDKLRGVRTKITTTDGLEDLPFIGAKTIRKIEDILETGTLE 273
Query: 281 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 340
+LEH EK++ AQ+L+ K
Sbjct: 274 RLEH-ANTEKIQ---------------AQRLFAK-------------------------- 291
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKR 398
RIPR EV+ M L+ ++ + ++L GSY RG+ +CGD+D ++ H D +R
Sbjct: 292 ---ERIPRSEVDDMVTLVTSTLRDIDADAVVLPSGSYTRGRQTCGDVDFLLTHGDPRR 346
>gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 582
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK I +IF + +IY L + R+ +Y KA V+E LP + + ++ + GIG
Sbjct: 4 NINKEIAKIFRDMAHIYEFLDDKFRALAYQKAAQVLEDLPDDVRNYIALGKLSEIRGIGT 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL- 322
Q+ I E + TGK+ K E +K + L +V G GP T +++Y E G T ++L
Sbjct: 64 HTQEKIIEYIKTGKIQKYEELKKLVPPDFLELM-DVPGFGPKTLKRIYQELGISTKEELI 122
Query: 323 --KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 370
+ + + G K +++ + +E + ERLL + ++
Sbjct: 123 KALKDGRVAKLKGFGPKKVENMLKGLELYE-KSKERLLLWEALNIANTIVEKLKTLKEIK 181
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKR 398
I GS RR K + GD+D++I D+ R
Sbjct: 182 NIELAGSLRRKKETIGDIDILISCDDKDR 210
>gi|323338571|gb|EGA79790.1| Pol4p [Saccharomyces cerevisiae Vin13]
Length = 509
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 49/282 (17%)
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNTLSTAS 187
+ + DG+SS K+ + ST DVE+ ++ N M +S+ L L
Sbjct: 126 DNADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRLLQGDK 173
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+TD + N N+ I +L Y GE R+ SY A +E
Sbjct: 174 GRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQSMENCD 225
Query: 248 FKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGP 305
F + S ++ L IG S+ IQ I+ TG L L + ++K++ F +GIG
Sbjct: 226 FNVRSGEEAHTKLRNIGPSIAXKIQVILDTGVLPGLNDSVGLEDKLK---YFKNCYGIGS 282
Query: 306 ATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPRHEVE 352
A++ +L N +S + + G Y+DD ++ R+E
Sbjct: 283 EIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECF 333
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 334 THLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|449548816|gb|EMD39782.1| DNA polymerase IV [Ceriporiopsis subvermispora B]
Length = 406
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 229 EDRRSF---SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI--------QEIVTTG 277
ED+ + ++ AI VI + +IES ++V+ + GIGK + I QE
Sbjct: 32 EDKNPYKIKAFTSAIAVINRFDHRIESVEEVRDVKGIGKGIAKRIALFLSGEQQEEAENH 91
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRL 334
++E E++++ + + + G+G A KL G +L+ L+ + L S ++
Sbjct: 92 VSVQVEDTEENKQRKAMQELTTIHGVGRVLAGKLVALGCMSLEHLRQPEFYNQLAPSMKV 151
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GL + D + R+ R + E + ++ + + + I GSYRR + D+DV+I HP
Sbjct: 152 GLDFVDHLDHRVTRPQAEAVIDFMK---DNMSSKFEISLVGSYRRESPTSSDVDVLIFHP 208
>gi|9631347|ref|NP_048188.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
gi|4049700|gb|AAC97660.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
Length = 603
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 31/208 (14%)
Query: 209 LNK-NITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-----------------KLPFKI 250
LNK I + + NIY L E++ +Y KAI I KL +
Sbjct: 288 LNKRKIIYMLHNIANIYEKLDENKYK-AYNKAINSIYEQGIIILKYNNTTINSPKLVDNM 346
Query: 251 ESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
E+ + K +P IG S+ I I++ + +++ ++ + I+ V IGP TA+
Sbjct: 347 ETVISKYKDIPNIGDSISKKIYNIISN---TYIDNISNTKEYKYITELMNVLYIGPKTAK 403
Query: 310 KLYEKGHRTLDDL-KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
L KG +T+ DL KN+D +S Q++ ++Y+D +K I R + +E ++ + +
Sbjct: 404 NLISKGIKTIKDLKKNKDKYLNSQQQIAIEYYDKLKP-INRSFISNLESSIKLSPNK--- 459
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
E IL GSY RGK + D+D++I+ D
Sbjct: 460 EWYIL--GSYARGKLTSKDIDILIVDFD 485
>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 581
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 21/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
NK + +IF K+ +I LG++ R SY +A +I +LP IE ++ LPGIG S
Sbjct: 5 NKELAQIFEKIADILEFLGDNIYRVNSYRRAANLISELPEDIEELYRRGKLTKLPGIGSS 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
I+E + TG + K E K + L +V GIGP T + YEK G R+ +D
Sbjct: 65 TLLKIEEFLRTGTVKKYEDLRKRVPEDLLELM-DVPGIGPKTLKVAYEKLGVRSKEDFIR 123
Query: 323 -KNEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVI 370
+ SL G++ ++ ++ RIP E M + +L+ E E I
Sbjct: 124 ALKDGSLAKLPGFGPKKVEKILKGIELWESVQERIPLIEAYPMAQDVLEYMKREESIENI 183
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
+ GS RR K + GD+D+++
Sbjct: 184 SVA-GSLRRMKETIGDIDILV 203
>gi|389739400|gb|EIM80593.1| Nucleotidyltransferase [Stereum hirsutum FP-91666 SS1]
Length = 631
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 224 YRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
+R L GE+R + SY KA+ V P KI S ++ LP +G + I++ + G +S++
Sbjct: 199 WRELDGEERSALSYRKAVSV--AYPTKINSTRDIQRLPFVGSKISSMIEQFIDQGYISEV 256
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ +T+++F ++GIGP TA++LY G +L+ L+
Sbjct: 257 RTTLHSARFKTLTVFNSIYGIGPHTARQLYALGLSSLEQLE 297
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
LGL+ +D+ +IPR EV ++ R++ +E+ P + G YRRGK D+DVV H
Sbjct: 416 LGLR--EDLSVKIPRDEVREIHRVIMGELDELQPGCVSTIVGGYRRGKEESNDVDVVFTH 473
Query: 394 PD 395
PD
Sbjct: 474 PD 475
>gi|167521203|ref|XP_001744940.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776554|gb|EDQ90173.1| predicted protein [Monosiga brevicollis MX1]
Length = 503
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
Y +A + +PF+++S DQ+ LP + ++ + +Q ++ G L+ + + +
Sbjct: 184 YRRAAMALRAIPFEVQSLDQLTNLPLLNRAAHEAVQWVLDHGTLAGFPRLYHESDLDALR 243
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL---------GLKYFDDIKTRI 346
+WG+G A + + G R+ + + H +L + + D+ I
Sbjct: 244 DLRRLWGVGVRLAWQFLQHGWRSAEAVVKA---VHEGKLKPANAQLEACCRDWTDLCLPI 300
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
PR ++ + + + P + G YRRG + C D+D++I
Sbjct: 301 PRERIDALRVWILGLVQAADPGARVTVTGGYRRGNSECHDVDLII 345
>gi|116754615|ref|YP_843733.1| phosphotransferase domain-containing protein [Methanosaeta
thermophila PT]
gi|116666066|gb|ABK15093.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
Length = 588
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 199 DPSLLYNPPDLN----KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA 253
+PSLLY+ N K I I ++ + GE+R + +Y +A IE L IE
Sbjct: 5 EPSLLYHLVRFNHVRNKEIAAILYEMGELLEIRGENRFKVIAYSRAARAIESLKEDIEDV 64
Query: 254 ---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
++ +PG+GK++ + I E +TTG + + L ++ G+GP T
Sbjct: 65 WRRGELDRIPGVGKAIAEKISEYLTTGHIKAYDDLVSSTPKGMKELL-QLQGVGPKTVAL 123
Query: 311 LYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHE--------------VE 352
L+EK G T+D+L+ +RL G +I I RH VE
Sbjct: 124 LHEKLGVSTVDELEAAARQHRIRRLPGMGPTKEANILKAIERHRRRSTRIPLSVAVRIVE 183
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+ R L+ G E L + + GSYRRGK + GD+D++
Sbjct: 184 HIMRHLE--GIEGLSNITV--AGSYRRGKETVGDIDIL 217
>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
Length = 575
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +IF K +I +G++ Y+ A +I L IE ++ LPGIG+
Sbjct: 3 NKELAQIFEKWADILEFMGDNPYHVRAYRNAARLINDLSEDIEVLAREGKLSQLPGIGQR 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+Q I E + TGK+ + E K + TI ++ G+GP T + LYE+ G R+++DLK
Sbjct: 63 LQAKILEFLRTGKIEEFEKL-KQQVPDTIFTLLDIPGVGPKTVKLLYEELGIRSIEDLKR 121
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQME----------------RLLQKAGEEVLPE 368
++ + L L F + + +E +E R++ E E
Sbjct: 122 --AIERGELLKLPGFGPKRVEKIKKGIELLEKSGGRILLGVAVFIADRIVNHLKEHSAVE 179
Query: 369 VIILCGGSYRRGKASCGDLDVV 390
I +C GS RR K + GD+D++
Sbjct: 180 RISVC-GSTRRMKETVGDIDIL 200
>gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol
phosphatase [Methanosarcina barkeri str. Fusaro]
gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase
[Methanosarcina barkeri str. Fusaro]
Length = 584
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ I E+F + +I + + +Y KA +IE L IE +G +PGIG
Sbjct: 3 NREIAELFYEAADILEYQQVEWKPRAYRKAAQMIENLGEDIEKIYAREGKAGLTKIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
+S+ DHI E + T K+ K E ++ T L E+ G+G +KL + G RTL DL
Sbjct: 63 ESIADHISEYLETNKVEKFEKLKEKAPSGTAELM-EIRGLGAKKIKKLSDTLGVRTLSDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILC--- 373
KN +RL G K ++ I ++E L KA +EV+ + C
Sbjct: 122 KNAIIAHRLKRLEGFGEKSEKNLARAIEQYEKSHARLALGKALPLADEVISALKAQCESR 181
Query: 374 -----------GGSYRRGKASCGDLDVV 390
GS RR K + GD+D++
Sbjct: 182 TSKIDLSKIIYTGSLRRLKETIGDIDIL 209
>gi|206901108|ref|YP_002251308.1| DNA polymerase subunit beta [Dictyoglomus thermophilum H-6-12]
gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
Length = 580
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIATLLEIKGENKYKIAAYQEAARRIENLPEDIEKLFKQGKLYQIKGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I+E +TTGK++ LE ++ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVTYLEELRREIPPEILELL-KIPGIGPKLAYRLYTELGIKDIDSLEK 121
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 370
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAREGKIRLLPRLGPKVEQNILEAIKEYREKQNVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPD 395
I+ GS RR K + GD+D++I D
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSD 208
>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
Length = 573
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 17/153 (11%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
D++ +PG+GKS ++ I +I+ TG S+ E ++ V L + G+GP Q LY+
Sbjct: 51 DRLDSIPGVGKSFKNKIVDILNTGTFSEYEKIRQEIPVNIEELMA-IPGMGPRITQFLYK 109
Query: 314 K-GHRTLDDLKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--- 365
+ G RT+DDLK E + TH R +G + I I R+E +R+L + +V
Sbjct: 110 RLGIRTIDDLK-EAARTHRIRRLPNMGAIKEERILNAIKRYEKRGADRILLETARQVADD 168
Query: 366 -------LPEVIILCGGSYRRGKASCGDLDVVI 391
+P + GS RR K + ++++++
Sbjct: 169 IKSILETIPYTKVSVVGSVRRQKETVNNINLIV 201
>gi|358393213|gb|EHK42614.1| hypothetical protein TRIATDRAFT_35082, partial [Trichoderma
atroviride IMI 206040]
Length = 110
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SL +Q++G+KY+ D + RIPR E E + ++ + P ++ SYR+GK G
Sbjct: 1 SSLQRAQQIGVKYYVDFQLRIPRAETEAIANVIFTHARRINPGFQMVIVSSYRQGKLESG 60
Query: 386 DLDVVIMHPD 395
D++V+I HPD
Sbjct: 61 DVNVIISHPD 70
>gi|257389025|ref|YP_003178798.1| PHP domain-containing protein [Halomicrobium mukohataei DSM 12286]
gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
Length = 577
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I F ++ A G D + +Y +A I + P +E D V + G+G
Sbjct: 4 NDEIARQFEAFADLLDAKGVDYKPRAYRRAAENIREYPQAVEGLAQEGEDAVGEIDGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG + +LE ++E ++ V G+GP TA LYE+ G TLDDL+
Sbjct: 64 AIASKVVEYVDTGHIEELEAL-REEYPLDMAAITSVEGVGPKTAGTLYEELGIETLDDLE 122
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIIL----- 372
+ Q + G K +I I +LL A GE V+ + +
Sbjct: 123 SAAEAGDIQTVKGFGAKTEQNILDGIDFAREAHERQLLGDARPNGERVVEYLDTVDAIAS 182
Query: 373 --CGGSYRRGKASCGDLDVVIMHPDRKR 398
GS RR +A+ GD+DV++ D +R
Sbjct: 183 VELAGSLRRWRATIGDVDVLVGSDDAER 210
>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
Length = 581
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
+PG+GK++ I+E + TG+L E +++ ++ + L EV GIGPA A LYE+ G
Sbjct: 57 IPGVGKAIAAKIEEYLRTGRLEYYEQLKREVPLQAVDLL-EVPGIGPARAHLLYEQLGIT 115
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME---RLLQKAGEEVLPEVI---- 370
T+ DL + + H R + + ++ RI R M+ RLL V EV+
Sbjct: 116 TIQDLL-QAAQEHKLRKLPGFGEKLEERIAREAARLMQRSKRLLLGIALPVAEEVVAALR 174
Query: 371 -------ILCGGSYRRGKASCGDLDVVIMHPD 395
I GS RR K + GD+D+++ D
Sbjct: 175 PHAAIRAIDPAGSLRRMKETIGDIDILVASDD 206
>gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
Length = 574
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK I IF ++ +I LG++ R +Y + ++ +L +E ++ +PGIG S
Sbjct: 4 NKEIARIFERMADILEFLGDNPYRINTYRRVANILSELGTDVEELVKTGKIYHIPGIGPS 63
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ I E + TGK+SK E ++ + L +V GIGP T + Y+K G R+ DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKEKVPEDLLELL-DVPGIGPKTLKLAYDKLGIRSKDDFVR 122
Query: 323 ------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPE 368
E L + R GL+ ++ K R+ E Q+ + LL E L
Sbjct: 123 AVRSGVLASLPGMGEKKLQNIMR-GLELYERAKERMSLIEAYQLGEDILLHMQKIEDLYT 181
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHP 394
I L GS RR K + GD+D+++ P
Sbjct: 182 NIELA-GSLRRRKETVGDIDLLVAAP 206
>gi|375145599|ref|YP_005008040.1| PHP domain-containing protein [Niastella koreensis GR20-10]
gi|361059645|gb|AEV98636.1| PHP domain protein [Niastella koreensis GR20-10]
Length = 596
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRR--SFSYYKAIPVIEKLPFKIESA----DQVKGLPGIG 263
N + IF ++ + YR LG R +Y A I L I D + L GIG
Sbjct: 14 NPELAAIFHQMASCYRYLGAKHRFRVMAYDSANRTINNLKNDISEYAGKNDGLHELKGIG 73
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+S+ + I E + TGK++ + +K + + L ++ G+GPAT + L+ + H +
Sbjct: 74 ESIGEKIIEYLHTGKINTFDQLKKKVPLGLLELM-DINGLGPATVKTLHRRLH-----IN 127
Query: 324 NEDSLTHSQRLG----LKYF-----DDIKTRIPRHEVEQMERLL---QKAGEEVLPEVII 371
N++ L + G LK F ++IK + + LL Q+ GE++L +V+
Sbjct: 128 NKEELIAAIEAGKLENLKGFASKKVENIKRGLKLFKQAHSRMLLWDAQRTGEDILQQVLQ 187
Query: 372 LCG-------GSYRRGKASCGDLDVV 390
L G GS RR K + GD+D+V
Sbjct: 188 LPGIKKAALAGSLRRKKETIGDIDIV 213
>gi|321257082|ref|XP_003193463.1| beta DNA polymerase [Cryptococcus gattii WM276]
gi|317459933|gb|ADV21676.1| beta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 556
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 50/197 (25%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALRLQGVGEKVASRIDEFLQTGEIAESQEILASPRYNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRLGLKYFDD----------- 341
+ F V+ IG A++LYE+ H RTL+D+K +YF D
Sbjct: 290 LQTFASVYTIGHFRAKELYERHHCRTLEDVK-------------RYFADMEKDGEAEQGR 336
Query: 342 ----------------------IKTRI-PRHEVEQMERLLQKAGEEVLPEV-IILCGGSY 377
+K + + EVE++ + + E +P +CGG Y
Sbjct: 337 GKGRRRMRGGMKEYEIVEEWMKLKNELDQKEEVEEIAACVLENLEAFIPNCEYTICGG-Y 395
Query: 378 RRGKASCGDLDVVIMHP 394
RRGK D+D+V P
Sbjct: 396 RRGKTQSSDVDIVFRPP 412
>gi|296121981|ref|YP_003629759.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
gi|296014321|gb|ADG67560.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
Length = 570
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 263
N I +L ++ LGE+ R +Y A IE LP ++ +S + L GIG
Sbjct: 3 NSQIAAALTELADLLELLGENAFRVRAYRNAARTIESLPDEVTLLLDQSPHALLELEGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
K + I + TTG+L +L+ + + ++ G+GP L+++ TLDDL
Sbjct: 63 KDLAQKISSLATTGQLDQLDEVRSQVPPGVVQML-KIPGLGPKKVATLWKELQVNTLDDL 121
Query: 323 -----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEE 364
K E S+ L + + I R EQ+ + L+K AG E
Sbjct: 122 QAAATAGRVAELKGFGKKTEQSILEGISLAAEAGRRVLISIAREAAEQIAQSLRKVAGVE 181
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS RR K +CGDLD++ + D
Sbjct: 182 RVE-----IAGSARRWKETCGDLDLLAIAAD 207
>gi|408406101|ref|YP_006864085.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366697|gb|AFU60427.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 589
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 232 RSFSYYKAIPVIEKLPFKIE---SADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEHF 285
R+ +YY+A I LP + S + +KGL P IGK++ I+E + TGK+ LE
Sbjct: 43 RARAYYRAADTIASLPEDVAVMYSRNGIKGLLEIPSIGKAIAAKIEEYIKTGKVHTLEKM 102
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG---------- 335
+ + + L+G + G+GP T + LY+K +KN L + R G
Sbjct: 103 KAEIPINIDELYG-LEGVGPKTIRALYDKLQ-----VKNLADLEKAAREGRLRTVPGFTE 156
Query: 336 ------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII---LCGGSYRRGKASCGD 386
LK + +T RH + ++ L+++ + +L + + GS RR K + GD
Sbjct: 157 RKEQDVLKKIEFFRTGRGRHIIGEVYPLIKQIEKSLLQVAGVKNAVAAGSVRRMKETIGD 216
Query: 387 LDVVIMHPD 395
+D ++ D
Sbjct: 217 IDYLVAASD 225
>gi|355572672|ref|ZP_09043760.1| PHP domain protein [Methanolinea tarda NOBI-1]
gi|354824363|gb|EHF08615.1| PHP domain protein [Methanolinea tarda NOBI-1]
Length = 571
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL--PFKIESADQVKGLPG 261
NP N+ + E + I L E+ + +Y +A IE+L P S ++++ +PG
Sbjct: 9 NPEMSNREVAEKLSLMGEILEILDENPFKVRAYRRAAESIERLGVPVGNLSPEELEAVPG 68
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
IG ++ ++EI+ TG +LE + + + G+GP T + L++K G +++D
Sbjct: 69 IGTAIAKKVREIIATGTFHELEEARSSVPASLVEMLA-LDGVGPKTIKTLWKKLGIQSID 127
Query: 321 DLKNEDSLTHSQR----LGLK----YFDDIKT-RIPRHEVEQMERLLQKAGEE----VLP 367
DL+ + H R G + + + I+ R PR +M RL E V
Sbjct: 128 DLERA-ARGHRIRAVRGFGPRKEEAFLEAIENYRQPR---ARMTRLFADQVIEGIRGVFA 183
Query: 368 EVIILCGGSYRRGKASCGDLDVVIM 392
E + GSYRR K++ GD+D+V +
Sbjct: 184 EGTFVVAGSYRRKKSTIGDIDIVTV 208
>gi|397779769|ref|YP_006544242.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938271|emb|CCJ35526.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 576
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 243 IEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+E+L + D+ + +PGIG + IQEI TG +L+ + I L +V
Sbjct: 63 VERLSIPVAGLDEEALTRIPGIGVRIAAQIQEIAGTGSFRELDDLQATIPGSVIDLL-DV 121
Query: 301 WGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYF----DDIKTRIPRHEVEQME 355
G+GP T L++K G +T+DDL E ++ + GL+ F ++ R R E+
Sbjct: 122 SGVGPRTLHTLWKKLGIQTIDDL--EAAVKGRRIRGLRGFGAKKEEAIGRGIRRYRERSN 179
Query: 356 RLLQKAGEEVLPEVIIL-------CGGSYRRGKASCGDLDVV 390
R+ + + VL V L GSYRRG ++ G +D+V
Sbjct: 180 RMTRPQADAVLGSVAALFPDGQYAVAGSYRRGASTVGKIDIV 221
>gi|383788361|ref|YP_005472930.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
gi|381363998|dbj|BAL80827.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
Length = 574
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 22/202 (10%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
NK + E F +L + GE+ + +Y +A VIE L IE D++ G+ G+GKS
Sbjct: 3 NKEVAEKFYELAEVAELAGENPFKVKAYLEAARVIENLTIPIEDLAKEDKLDGIKGVGKS 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK- 323
+ + I+E + TGK++KLE +K + L +V G+G + LYEK G + L+DL+
Sbjct: 63 IAEKIKEYLETGKITKLEELKKVVPEGLLEL-EKVKGLGAKRVKILYEKLGIKNLEDLEK 121
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI----------- 370
E + + G K I I ++ +R L + ++
Sbjct: 122 AAKEHKIRDLEGFGEKTEQKILEGIKSLRDKRTDRFLIGIALPIAESIVNLLSKNTPIEK 181
Query: 371 -ILCGGSYRRGKASCGDLDVVI 391
++C GS RR K + GD+D+++
Sbjct: 182 HMIC-GSLRRMKDTIGDIDILV 202
>gi|410670506|ref|YP_006922877.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
gi|409169634|gb|AFV23509.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
Length = 586
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N I +I ++ + GED + +Y KA I+KL I+S Q + +PG+GK+
Sbjct: 3 NAEIADILSRMSRLLEFKGEDPFKIMAYEKAARSIKKLEMDIDSIHQEGHLSDVPGVGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
++D I+E++TTG E + I + ++ GIGP TA+ LYE+ G ++ +L
Sbjct: 63 IEDKIKELLTTGTFEAYERILAEIPSGIIEIM-DISGIGPKTAKILYERLGIESIGELIK 121
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-------LPEVI------- 370
+ H R R+PR +Q ER+L+ A V P +
Sbjct: 122 A-AEEHRIR-----------RLPRMGPKQEERILKAARNRVQSSDFRRTPLAVATAIARQ 169
Query: 371 -------------ILCGGSYRRGKASCGDLDVVIM 392
++ GS RR K + G++D+V +
Sbjct: 170 ITEELSASPYIDTVVPAGSLRRRKETVGNIDLVAL 204
>gi|325959164|ref|YP_004290630.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
gi|325330596|gb|ADZ09658.1| PHP domain protein [Methanobacterium sp. AL-21]
Length = 569
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N+ + I ++ ++ D R+ +Y +A +E IE +++ LPGIG +
Sbjct: 3 NQLVASILNQVADLMEMESVDFRTKAYRRAAHTVEIQSEAIEDIRKQGKLQDLPGIGGKI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L LE+ +K+ V L V G+GP ++LY E G ++LDDL+ +
Sbjct: 63 AGKIEEIIDTGSLKYLENLKKEFPVNYDELM-TVEGLGPKGIKQLYQELGVKSLDDLEKQ 121
Query: 326 DSLTHSQRL---GLKYFDDIKTRIPRHE--------------VEQMERLLQKAGEEVLPE 368
H +RL G K +I + + +++ LL+ GE+ +
Sbjct: 122 AKNHHIRRLKGMGEKTERNILVNLGFAKKSGGRSLIGDILPVATKIKDLLR--GEDYVDR 179
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHP 394
V I GS RR K + GD+DV++ P
Sbjct: 180 VEI--AGSIRRMKETVGDIDVLVTTP 203
>gi|333987104|ref|YP_004519711.1| PHP domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333825248|gb|AEG17910.1| PHP domain protein [Methanobacterium sp. SWAN-1]
Length = 566
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 27/204 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N+ + I ++ ++ G D R+ +Y +A +E L I+ +++ LPGIGK++
Sbjct: 3 NRKVATILNRIADLLEMDGVDFRTKAYRRAAHTVEFLSRDIQDVRNEGKLEELPGIGKNL 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L E+ +K+ V +L + G+GP + + LY E G + L+DL+
Sbjct: 63 SKKIEEIIDTGSLEYYENLKKEFPVDFEALVA-IEGLGPKSIKLLYDELGIKNLEDLEK- 120
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 373
++R ++ + + +E ++ + G +L +++ L
Sbjct: 121 ----AAKRHRIRRLKGMGDKKEHQIIENLKFARKTTGRTLLGQILPLAEGIKKELEKSDV 176
Query: 374 -----GGSYRRGKASCGDLDVVIM 392
GS RR + + GD+D++++
Sbjct: 177 SDVEIAGSIRRMQETVGDIDILVV 200
>gi|406936466|gb|EKD70180.1| hypothetical protein ACD_46C00611G0005 [uncultured bacterium]
Length = 572
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 22/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N I IF K+ N+ GE+ R +Y A VI + + IE D + LPGIGK
Sbjct: 5 NTEIAAIFSKVANLLDIKGENPFRIRAYRNAARVIYGQSKSIAKMIEDNDDLTLLPGIGK 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ I+ IV TG+L L EK ++ ++ G+GP Q +Y K +T DLK
Sbjct: 65 DLAGKIKTIVQTGQLPLLTQMEK-RLPPVLNELMQIEGLGPRRIQIIYRKLKVKTSADLK 123
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVIIL--------- 372
Q++ + D I +I R V Q + ++ A + + II
Sbjct: 124 LAIEKGRLQKMK-GFGDKIAQKILRGIEHVSQYSKRIKLADAFPIVDSIIHYLKQEKNIS 182
Query: 373 ---CGGSYRRGKASCGDLDVV 390
C GS+RR K + GDLD++
Sbjct: 183 KVECAGSFRRRKETVGDLDIL 203
>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
Length = 567
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 264
NK I I K ++ GE+ + +Y A ++E ++ + LPGIGK
Sbjct: 4 NKEIASILSKTADLLEIKGENPFKVRAYRNAARIVENSSKDFNKLVKEGFDLTRLPGIGK 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLK 323
+ I+EIV TGK KLE +K+ + + + G+GP +++Y+ T LD+LK
Sbjct: 64 DLSLFIKEIVETGKFHKLEELQKEIPPGLVDMLS-IEGLGPKRIRQIYDAFKVTSLDELK 122
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+L G+K R +VE++ ++K + I
Sbjct: 123 KYAESGELDKLPGFGPKLIEKILKGVKQIKKAGIRFLWADVEEIAEDIRKYLLKFRGVEI 182
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GSYRR K + GDLD++++ D
Sbjct: 183 VEIAGSYRRKKETVGDLDILVVAED 207
>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
Length = 580
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKS 265
N +I E+F + ++ L EDR R +Y +A VI LP + + +++ +PG+GK+
Sbjct: 7 NHDIAEVFSAIADLMEILDEDRFRVQAYRRAGDVIRHLPAPLATYRARGELEQIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 323
+ + I E++ TG+L + L V GIGP TA +LY E G +L +LK
Sbjct: 67 IAEKIGELLDTGELPYYNRLREKVPPGVRELL-RVPGIGPRTAGRLYRELGITSLAELKV 125
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA--GEEVLPEVI--------- 370
L + G K D I I E ++ LL A E L +
Sbjct: 126 AAEAGRLAALKGFGAKTIDSILQGISAAERQERRMLLAHAIDSAEALINALRAAVPALSQ 185
Query: 371 ILCGGSYRRGKASCG 385
GS RRG+ + G
Sbjct: 186 AAYAGSLRRGRPTVG 200
>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
Length = 571
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N I +IF + ++ GE+ + +Y A +E + +E + LPGIG
Sbjct: 5 NSEIAKIFNEYADLLEIKGENPFKVRAYRNAARTVENIGKSLEELVNEGYDLTKLPGIGT 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ +I+EIV TGK SKLE K+E T+ + G+GP + LYEK H ++++DL+
Sbjct: 65 DLSLYIKEIVKTGKFSKLEQI-KEEIPPTLVEMLSIEGLGPKRIKTLYEKLHIQSMEDLR 123
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAGEEVLPEV 369
++L G+K R E E ++ LL+ + L +
Sbjct: 124 RAAESGEIEKLPGFGPTLVQKILKGVKLAKKAGQRFKWSEAKEYVDDLLEYLHQIELTHL 183
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS+RR K + GDLD++ D
Sbjct: 184 EV--AGSFRRKKETVGDLDILATAKD 207
>gi|386812371|ref|ZP_10099596.1| DNA polymerase [planctomycete KSU-1]
gi|386404641|dbj|GAB62477.1| DNA polymerase [planctomycete KSU-1]
Length = 574
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
N I +F ++ N+ GE+ R SY KA ++ + IE ++K +PGIG+
Sbjct: 3 NHEIAALFERIANVLELKGENAFRINSYRKAARILGDVTEDIEVLAREGKLKDIPGIGEG 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
M + I E + TGK+SK + K+ TI+L ++ G+GP T L +K G +L DL
Sbjct: 63 MAEKIMEYIHTGKMSKYDEVMKEISEETITLM-QIPGLGPKTVAMLNKKLGIVSLSDL-- 119
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP------------EVI-- 370
E +L + GL D K + +E L K ++ +P EV+
Sbjct: 120 EKALQEGKLKGLFGMGDKKIQNIMRGIE-----LFKTSQQRIPIGMAYPVVKGIIEVLKH 174
Query: 371 ------ILCGGSYRRGKASCGDLDVV 390
I GS RR K + GD+D++
Sbjct: 175 HSQTRDIQSAGSLRRMKETVGDIDIL 200
>gi|295321899|pdb|3LQC|B Chain B, X-Ray Crystal Structure Of Oxidized Xrcc1 Bound To Dna Pol
B Thumb Domain
Length = 200
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
YF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 1 YFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 58
>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|448288324|ref|ZP_21479524.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
11551]
gi|445569843|gb|ELY24413.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
Length = 582
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N + +F + ++ A + +Y +A I + P IE AD V + G+G
Sbjct: 4 NDEVASLFEEFADLLDAKDVSYKPNTYRRAAENIREYPHPIEELAADGADAVGEIQGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E TG++ +LE + V +L V G+GP T KLY+ G TLD+L+
Sbjct: 64 AISAKIIEYFETGEIEELEALRAELPVEMATLT-SVEGVGPKTVGKLYDALGITTLDELE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIP-RHEVEQMERL--LQKAGEEVLPEV-------I 370
E+ + + G K +I+ IP E ++ ERL + ++VL +
Sbjct: 123 RAAEEEQIREVKGFGPKTEANIRENIPFAREAQKRERLGNARPLADDVLAYLREADTVQA 182
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
GS RR + + GD+DV++
Sbjct: 183 AEVAGSIRRWRDTIGDVDVLV 203
>gi|441497932|ref|ZP_20980137.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
gi|441438269|gb|ELR71608.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
Length = 581
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 30/216 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGI 262
D NK + I L ++YR LG + ++ +Y KA I+ LP I V+ +PG+
Sbjct: 3 DHNKQLAAILHDLGSMYRYLGGENLFKAIAYMKASQAIKGLPGDISVYLKDGTVRDIPGV 62
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH------ 316
G+S++ I+E +TG +++ E+ K + L ++ G GP + ++L++ H
Sbjct: 63 GESLEKDIREFTSTGTVTRFENLIKIVPHGLMELI-DISGFGPQSLKRLHQDLHIETKEE 121
Query: 317 --RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE---------EV 365
+ L+D + + + G K +++ + H+ + LL A E +
Sbjct: 122 VVKALEDGR----IGQLKGFGPKKVENMLRGLKLHKHVEERMLLCDALEVSEKLLTLLKA 177
Query: 366 LPEVI-ILCGGSYRRGKASCGDLDVV--IMHPDRKR 398
LPEV + GS RR K + GDLD++ + DRK+
Sbjct: 178 LPEVKRVELAGSLRRKKETIGDLDILAAVNIKDRKK 213
>gi|342319290|gb|EGU11239.1| Sorting nexin-41 [Rhodotorula glutinis ATCC 204091]
Length = 808
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 53/166 (31%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
+ S SY A+ I PFKIE+ +Q +P IG+ + IQE + G F K+ +
Sbjct: 58 KESISYATAVSCIIGTPFKIETVEQAAKIPKIGEKLTLKIQEFLDYG-------FIKESR 110
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
A A +LYE+G RTL+DL+ + + LKY+DD++ +
Sbjct: 111 Y--------------AKANELYERGVRTLEDLRRAMNRPRIKSY-LKYYDDMQEK----- 150
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396
YRRGK D+D++ +P R
Sbjct: 151 --------------------------YRRGKEFSNDVDILFTYPHR 170
>gi|390603160|gb|EIN12552.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 388
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV--- 291
++ AI I L I S +Q K L GIG + I + L+ +D
Sbjct: 22 AFKLAIRTINALEDPITSGEQAKDLRGIGPRIAARIDQF--------LQELNRDVSHESH 73
Query: 292 ---------------RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN----EDSLTHSQ 332
R ++ GIGP+ A+ L G ++ L+ ++ LT SQ
Sbjct: 74 HSSSAAAESEDVIADRAAKELQQITGIGPSKARTLVAAGCTSIAQLRASPELKNKLTRSQ 133
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
R+ L + +K + R + EQ +L++ ++ GSYRRG A D+D++I+
Sbjct: 134 RIALDFHGQLKKGVTRAQSEQALKLVRMCVPSSCEAHLV---GSYRRGAAQPSDIDILIL 190
Query: 393 HPD 395
PD
Sbjct: 191 DPD 193
>gi|374851400|dbj|BAL54361.1| phosphotransferase domain-containing protein [uncultured
Chloroflexi bacterium]
Length = 575
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 23/207 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N+ + +F +L ++ GE + +Y + +E LPF+ + Q ++ +PG+G++
Sbjct: 3 NRQLAAVFRRLADLLEIRGEVVYKVLAYRRVADSLEALPFEAQRYWQEGRLREIPGVGEA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKD------EKVRTISL----FGEVW-GIGPATAQKLYEK 314
+++ + E++ TG+L LE E + E +R L G +W +G AT ++L E
Sbjct: 63 IEEKLDELLRTGRLGFLERLEAEVPPTLTEWLRVPGLGPKRVGTIWRALGIATLEELEEA 122
Query: 315 GHR-TLDDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI- 370
+ L L + T + L GL+ RIP + + ER+L++ +P V+
Sbjct: 123 ARQGRLRHLPGFGARTEANILAGLEALKRSHGRIPLGQALPLAERILEELRH--VPGVVR 180
Query: 371 ILCGGSYRRGKASCGDLDVVIM--HPD 395
+ GS RR +++ GD+D++ HP+
Sbjct: 181 VEMAGSLRRMRSTVGDIDLLAAASHPE 207
>gi|374849850|dbj|BAL52854.1| DNA Polymerase X family [uncultured gamma proteobacterium]
Length = 574
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 22/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 264
N I +F +L + GE+ R +Y+ A I P + + + + LPGIG+
Sbjct: 5 NSEIAGLFDQLAELLDIEGENPFRVRAYHNAARTIRSYPKSLAEMVAAGEDLTELPGIGE 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK 323
++ I+ IV TG+L +LE K + L + G+GP + L Y +TL+DL+
Sbjct: 65 AIAKKIETIVRTGRLPQLEQVLKRTPKSLLELL-RIEGLGPKRVKTLFYLLKIKTLEDLE 123
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 370
+ L GLK + I + +H +++ +R L+ E V ++
Sbjct: 124 RAARSGRIRELPGFGLKTEELILNHLQKHALQE-KRFLRFEAESVAEAILAHLKGCPGLD 182
Query: 371 -ILCGGSYRRGKASCGDLDVV 390
I GS+RR K + GDLD++
Sbjct: 183 RIEVAGSFRRWKETVGDLDIL 203
>gi|406956854|gb|EKD84891.1| hypothetical protein ACD_38C00146G0023 [uncultured bacterium]
Length = 583
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 235 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y A IE L +I ++ +PGIG S++DH+ E+ TG++ E +K
Sbjct: 31 AYENAASAIENLTSEIHDLWEEGKLDQIPGIGASLKDHLNELFKTGQVQHWEIIKKGVAP 90
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
T F E+ G+GP TA+KL G L+DLK + S L K F +I ++ +
Sbjct: 91 ATFE-FLEIAGVGPKTAEKLAGLGVNNLEDLKKK---LKSGELVKKGFS---AKIAQNIL 143
Query: 352 EQMERLLQKAGEEVLPEVIILCG------------------GSYRRGKASCGDLDVVI 391
+++ QK +LP + GS RR A+ GDLD +
Sbjct: 144 GGLDQAGQKGNRMLLPYAAVQADRILNYLKKSPDILQAHPLGSLRRMVATVGDLDFAV 201
>gi|319956700|ref|YP_004167963.1| php domain-containing protein [Nitratifractor salsuginis DSM 16511]
gi|319419104|gb|ADV46214.1| PHP domain protein [Nitratifractor salsuginis DSM 16511]
Length = 578
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 264
N I + F +L + G++ R +Y A IE + +E + LP IG+
Sbjct: 8 NSEIAQFFKELADYLEIKGDNPFRIRAYRNAARTIETSGYDFAKLVEEGYDLSQLPDIGE 67
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ I EIVTTGKLSKLE +K+ + L ++ G+GP + LYEK G +L++LK
Sbjct: 68 RIAKKIVEIVTTGKLSKLEEVKKEFPPHILDLL-KIEGLGPKKVKTLYEKLGIGSLEELK 126
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPE 368
E + G K + I + ++ E L +A G + + +
Sbjct: 127 KAAEEHKIRELPGFGEKTEEKILKGVVLYKKEGKRFLFAEAEPYASELYEYLKGFKAIHQ 186
Query: 369 VIILCGGSYRRGKASCGDLDVV 390
+ I GS+RR K + GDLD+V
Sbjct: 187 LTI--AGSFRRRKETVGDLDIV 206
>gi|392574923|gb|EIW68058.1| hypothetical protein TREMEDRAFT_32680 [Tremella mesenterica DSM
1558]
Length = 553
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Query: 209 LNKNITEIFGKLINIYRALGEDR-----RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
+N++I + K I +YR EDR SY +++ +++ +P +I S + L +G
Sbjct: 200 VNQDIIDAI-KPILLYREY-EDRDQVNSNVLSYRRSLSMLKSVPRRIRSGKEAMKLADVG 257
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+ + I E ++TG +++ ++ + + ++ F V+ IG TA++LY+K + RTL+D+
Sbjct: 258 EKVAIRIDEYLSTGSVAESQNILSSSRYQALNEFASVYTIGKVTAKELYDKWNCRTLEDV 317
Query: 323 KN--------------EDSLTHSQRLGLKYFDDIKTRI-------PRHEVEQMERLLQKA 361
+ ++ + + G+ + D ++ + EV+++ + +
Sbjct: 318 RKHYEFLAGEAPEVREKEKIRRRKSGGMLHVDIVEAWMGLKSELDTPDEVQEIADCVMEH 377
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+L G YRRGK D+D+V P
Sbjct: 378 LSALLDGCQYTITGGYRRGKPQSNDVDIVFCPP 410
>gi|337286473|ref|YP_004625946.1| PHP domain-containing protein [Thermodesulfatator indicus DSM
15286]
gi|335359301|gb|AEH44982.1| PHP domain protein [Thermodesulfatator indicus DSM 15286]
Length = 579
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +IF K+ + G++ R +Y +A IE L +E + +++ +PGIGK
Sbjct: 3 NKEVADIFRKIAALLEIKGDNPYRIRAYQRAAQNIEALTVDVEELAAKGKLERIPGIGKD 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I EI+ TG L K E K E + F E+ G GP A+ +YE G +T+++L+
Sbjct: 63 LAQKIIEILETGTLQKYEEL-KQEIPPELLKFLEIPGFGPKKAKIVYETLGIKTIEELEK 121
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLP 367
RL G+K + R+P V E++ LL+K P
Sbjct: 122 ACLEHRLSRLPGFGPKTEQNILKGIKLLKQKRGRLPIGLVLPWAEEIVALLKKKS----P 177
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
I GS RR + + D+D+++ D
Sbjct: 178 VERIDVAGSIRRRRETVKDIDILVTAKD 205
>gi|373952080|ref|ZP_09612040.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
gi|373888680|gb|EHQ24577.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
Length = 565
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 17/165 (10%)
Query: 243 IEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
++KLPF I S D+++ + GIGKS+ I E++TTG + +L+ + + G +
Sbjct: 37 VDKLPFAIASKPLDELEKIDGIGKSLAAKIAELLTTGTMIELDELLAATPPGVVEMMG-I 95
Query: 301 WGIGPATAQKLYEKGH-RTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIP--------- 347
GIGP ++ + T+ +L NE+ L ++ GLK ++I+ I
Sbjct: 96 KGIGPKKIAVIWHDLNIETVGELFYACNENRLIEAKGFGLKTQEEIRKAIEFRMASNGKF 155
Query: 348 -RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+VE + LQ+ +++LP+ ++ G YRR +L +VI
Sbjct: 156 LYSQVEPLVAGLQEQLQKILPDAAMMVCGQYRRRCEIVTELCLVI 200
>gi|21227996|ref|NP_633918.1| DNA polymerase beta [Methanosarcina mazei Go1]
gi|20906424|gb|AAM31590.1| DNA polymerase beta [Methanosarcina mazei Go1]
Length = 584
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ + E+ + +I + + +Y +A IE IE + KG +PG+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEIPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMSDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 370
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 371 --------ILCGGSYRRGKASCGDLDVV 390
I+ GS RR K + GD+D++
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDIL 209
>gi|288818571|ref|YP_003432919.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|384129325|ref|YP_005511938.1| PHP domain-containing protein [Hydrogenobacter thermophilus TK-6]
gi|288787971|dbj|BAI69718.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|308752162|gb|ADO45645.1| PHP domain protein [Hydrogenobacter thermophilus TK-6]
Length = 580
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIP-VIEKLPFKIES---ADQVKGLPGIGKS 265
NK I EIF ++ +I LG++ S Y+ + ++ +L +E + ++ +PGIG S
Sbjct: 4 NKEIAEIFERMADILEFLGDNPYRISTYRRVANILSELNVDVEDLVKSGKIHHIPGIGAS 63
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ I E + TGK+SK E + + L V IGP T + YE+ G RT DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKGKVPEDLLELMN-VPSIGPKTLKLAYERLGIRTKDDFIR 122
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP------EVI-- 370
L G K +I I E + L +A G+E L ++I
Sbjct: 123 AVRSGMLATLPGFGEKKLQNIMRGIELWEKSKERMTLIEAFEIGQEYLSYMKRLGDIIER 182
Query: 371 ILCGGSYRRGKASCGDLDVVI--MH 393
I GS RR K + GD+D+++ MH
Sbjct: 183 IELAGSLRRRKETVGDIDMLVSAMH 207
>gi|415986835|ref|ZP_11559699.1| DNA polymerase X family protein, partial [Acidithiobacillus sp.
GGI-221]
gi|339834872|gb|EGQ62600.1| DNA polymerase X family protein [Acidithiobacillus sp. GGI-221]
Length = 218
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVI----EKLPFKIESADQVKGL 259
P LN +I F ++ ++ ED F +Y A ++ L +E+ + + L
Sbjct: 2 PVLNPDIARAFDEIADLLEI--EDANPFRVRAYRTAARLVLGLSSDLKTMVEAGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
PGIG+ + I EIVTTG S LE EK L +V G+GP + L+ +
Sbjct: 60 PGIGEDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHEL---- 114
Query: 320 DDLKNEDSLTHSQRLG----------------LKYFDDIKTRIPRHEV-------EQMER 356
D++ D LT + R G L+ +PR + + R
Sbjct: 115 -DVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQIAAVPRFPIAVAAPYAAALVR 173
Query: 357 LLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
LQ +P V ++ GS+RRG+ + GDLD++
Sbjct: 174 YLQN-----VPGVRRVVVAGSFRRGRDTVGDLDIL 203
>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
Length = 571
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 58/224 (25%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL----PFKIESADQVKGLPGIGK 264
N I IF ++ ++ GED R+ +Y A IE L +E+ + + +P IG+
Sbjct: 5 NAEIASIFTQIADLLEIRGEDPFRTRAYRNAARTIENLGKDLSKMVEAGEDISKIPTIGE 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ + I+EIV TG+L+KLE+ + + + ++ GIGP A+ LY
Sbjct: 65 RIANKIREIVQTGRLAKLEYLKHSFPPHLLDIL-KIEGIGPKRAKILY------------ 111
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEV-------EQMER-------LLQKAGEEVLPEVI 370
Q L + + ++ H++ E+ME+ L +K G+ L V
Sbjct: 112 -------QELNIGSLEALRKAAEAHKISQLKGFSEKMEQKILKGTMLAKKEGKRFLYSVA 164
Query: 371 -------------------ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS+RR K + GDLD++ D
Sbjct: 165 EPHAQALEAYLKNFSGAEQVTVAGSFRRRKETVGDLDILATSKD 208
>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
Length = 575
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 35/215 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +YY+A + L IE + + LPGIG
Sbjct: 3 NQELARIFEEIGLMGEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAKKGKEALLELPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ D I E + TG++ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLADKILEFLATGRVKK--HEELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEK 120
Query: 322 LKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMER-LLQKAGEEV 365
LK ++L L LK F K R P V + R LL++
Sbjct: 121 LK--EALERGDLLRLKGFGAKKAERIKEGLLLAQAASKRRPLGAVLSLARNLLEQI--RA 176
Query: 366 LPEV--IILCGGSYRRGKASCGDLDVVI--MHPDR 396
LP V LC GS RR K + GDLD ++ + P+R
Sbjct: 177 LPGVKKAELC-GSARRYKDTVGDLDYLVASLEPER 210
>gi|169845525|ref|XP_001829482.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
gi|116509547|gb|EAU92442.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
Length = 444
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 234 FSYYKAIPVIEKLPFKIESAD-QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE--- 289
++ AI VI +L I+S D QV + GIG +++ I L+ E+ + E
Sbjct: 61 LAFSNAINVISQLQQPIKSGDDQVLEMKGIGIGIKNRINTYFIQKSLASSENSVERENAL 120
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS----LTHSQRLGLKYFDDIKTR 345
K R I V GIG A+ L E G L L + L+ Q +GLKY + ++
Sbjct: 121 KKRAILDLQRVPGIGAVKAKALVEGGCTGLASLIASEEFHSLLSAQQIIGLKYMEHLEKP 180
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R +VE + L KA E+I + G YRRG + ++++++HPD
Sbjct: 181 ASRDQVESVLNLC-KANLSSRYEIIPV--GEYRRGLSESSTIEMLVLHPD 227
>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
Length = 577
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 266
N+ I IF ++ +I G++ +Y +A IE L +E S D++ +PGIG+ +
Sbjct: 3 NQEIARIFSEMADILEIKGDNPFKIRAYRRAALNIEGLSRSVEDLSRDELLEIPGIGEEL 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK-- 323
I+E + TG + + + + +SL V G+GP TA++++E+ H ++DDL+
Sbjct: 63 AAKIEEYIGTGAIHAHDKLKGEIPSGLLSLLA-VPGLGPKTARQIFEQRHIASIDDLERA 121
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPR----HEVEQMERLLQKAGEEVLPEV-------II 371
E L + K ++I I HE + R+L A +++ E+ I
Sbjct: 122 AREHKLAGIPGIQKKTEENILKGIATVQQGHERRPLGRVLPLA-LDLVEELRKRARFGAI 180
Query: 372 LCGGSYRRGKASCGDLDVVIMHP 394
GS RR K +C D+D+V P
Sbjct: 181 EIAGSIRRRKETCKDIDIVATSP 203
>gi|410697475|gb|AFV76543.1| DNA polymerase IV (family X) [Thermus oshimai JL-2]
Length = 575
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 39/218 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + ++F ++ + LG++ R +Y +A + L IE+ Q KG LPGI
Sbjct: 3 NEELAQVFEEIALMSEFLGDNPFRVRAYLEAARTLRDLDIPIETVAQ-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG++ K H E +V R + V G+GP TA++LYE G +L+
Sbjct: 62 GPDLAEKILEFLATGRVKK--HQELLAQVPRGVLAVMAVPGVGPKTARQLYEALGIDSLE 119
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG----------------EE 364
LK ++L L LK F K R ++ LLQ G EE
Sbjct: 120 GLK--EALERGDLLKLKGFGPKKAERIREGLD----LLQATGRRRPLGAVLSFARNFLEE 173
Query: 365 V--LPEV--IILCGGSYRRGKASCGDLDVVIMHPDRKR 398
+ LP V LC GS RR K + GDLD + P +R
Sbjct: 174 IRALPGVEKAELC-GSARRYKETVGDLDYLAASPTPER 210
>gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 576
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVI----EKLPFKIESADQVKGL 259
P LN +I F ++ ++ ED F +Y A ++ L +E+ + + L
Sbjct: 2 PVLNPDIARAFDEIADLLEI--EDANPFRVRAYRTAARLVLGLSSDLKTMVEAGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
PGIG+ + I EIVTTG S LE EK L +V G+GP + L+ +
Sbjct: 60 PGIGEDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHEL---- 114
Query: 320 DDLKNEDSLTHSQRLG----------------LKYFDDIKTRIPRHEV-------EQMER 356
D++ D LT + R G L+ +PR + + R
Sbjct: 115 -DVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQIAAVPRFPIAVAAPYAAALVR 173
Query: 357 LLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
LQ +P V ++ GS+RRG+ + GDLD++
Sbjct: 174 YLQN-----VPGVRRVVVAGSFRRGRDTVGDLDIL 203
>gi|395645114|ref|ZP_10432974.1| PHP domain protein [Methanofollis liminatans DSM 4140]
gi|395441854|gb|EJG06611.1| PHP domain protein [Methanofollis liminatans DSM 4140]
Length = 561
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL--PFKIESADQVKGLPGIGKSM 266
N+ + + G++ + GE+ +Y +A I+ L P S + ++ +PG+G+++
Sbjct: 5 NREVARLLGEIGALLEIQGENPFKIRAYTRAAEQIDHLAEPISSLSTEDLEAIPGVGEAI 64
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDDL 322
IQ+I+ G ++LE I L ++ G+GP T +KL+ G L+
Sbjct: 65 AGKIQDILNAGTCAELERLRAATPPGLIRLL-DLNGVGPKTVRKLWTGLGVDGIEALEAA 123
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRI--PRHEVEQMERLLQKAGEEVLPEVI---ILCGGSY 377
+ + G K DDI I R +M R + L I GS
Sbjct: 124 ARSRRIRALKGFGAKKEDDILKAIAEAREGAGRMNRAEAERLAAALTAAIPGDSWVAGSL 183
Query: 378 RRGKASCGDLDVVIMHPDRK 397
RRG+++ GD+D+V P R+
Sbjct: 184 RRGRSTIGDIDIVTTAPPRE 203
>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 574
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPG 261
P N I EI ++ ++ GE+ R +Y +A +E P + + + LPG
Sbjct: 2 PVHNAEIAEILYEVADLLEIEGENPFRVRAYREAARTVENHPRSLAEMAGEGEDLTRLPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
IG+ + D I+EI TG L + E + L G V G+GP ++L+ + G +
Sbjct: 62 IGEDLADKIREIARTGTLRQAEELRERVPPGLRGLLG-VPGLGPRRVRELHRRLGVESAA 120
Query: 321 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERL-LQKAGEEVLPEVIILCG-- 374
+L+ +RL G K +I + R E Q RL + L E + CG
Sbjct: 121 ELERAAREGRVRRLPGFGAKTERNILEALGRKERPQRFRLSAAEPAARALEEHLEGCGAV 180
Query: 375 ------GSYRRGKASCGDLDVVIMHPDRKR 398
GS+RR K + GDLDVV + +R
Sbjct: 181 REAVVAGSFRRRKETVGDLDVVACSQEGRR 210
>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
SA-01]
gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
Length = 575
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA-----DQVKGLPGIG 263
N+ + +F ++ + LG++ R +YY+A + L IE + + LPGIG
Sbjct: 3 NQELARLFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEVAKGGREALLALPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDD 321
+ + I E + TG++ K H E E+V + + EV G+GP TA++LY E G +L+
Sbjct: 63 PDLAEKILEFLKTGEIKK--HRELAERVPKGVLAVMEVPGVGPKTARQLYDELGIDSLEK 120
Query: 322 LKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMERLLQKAGEEVL 366
L+ ++L L LK F K R P V + R L A E L
Sbjct: 121 LR--EALDRGDLLRLKGFGQKKAERIREGLALVQVAGKRRPLGAVLSLARNLLAAIRE-L 177
Query: 367 PEV--IILCGGSYRRGKASCGDLDVVI 391
P V LC GS RR K + GDLD ++
Sbjct: 178 PGVERAELC-GSARRYKDTVGDLDYLV 203
>gi|328954246|ref|YP_004371580.1| PHP domain-containing protein [Desulfobacca acetoxidans DSM 11109]
gi|328454570|gb|AEB10399.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 577
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE------SADQVKGLPGIG 263
N I IF + G + ++Y KA +E L +E +K +PG+G
Sbjct: 3 NHEIARIFQVIAEYLEMEGVRFKPYAYQKAALTLENLKDSVEDIYNQGGLKGLKAIPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
+S+ I+E + TGK+ E F + + +L V G+GP A+ L+EK G L +L
Sbjct: 63 ESIAQKIEEYLNTGKIEYYEEFRRKLPIDLDALIA-VEGMGPKKAKMLFEKLGITNLTEL 121
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC--------- 373
E++ + LK F D + + +E +E + + G +L EV+ L
Sbjct: 122 --EEAARSHKIAPLKGFGD---KTEANIIEGIEFVKKSTGRFLLGEVLPLADRVLATLRA 176
Query: 374 ---------GGSYRRGKASCGDLDVV 390
GS RR K + GDLD +
Sbjct: 177 LPEVQRADVAGSLRRMKETIGDLDFL 202
>gi|383766497|ref|YP_005445478.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
gi|381386765|dbj|BAM03581.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
Length = 597
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 18/205 (8%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIG 263
P N ++T +F + + LG + + ++ KA V+E L S ++ LPG+G
Sbjct: 2 PSTNASLTAVFEDMARLTEVLGGNGFKVNAFVKAARVVEALERDAASFSRSELVALPGVG 61
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
D I E V +G ++ E ++ ++L G + GIGP +A + + + ++DDL
Sbjct: 62 TGTADRILEFVESGAVADHEDLKERVPAGVVALMG-ISGIGPKSAARFWHEAEVESIDDL 120
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEVI-- 370
K ++ L + G K D I + RH L E V
Sbjct: 121 KAAIDDGRLAALKGFGQKKIDGIAKSLAFAERFGDRHRRGVAAALAGAVAEAVAGVEGVR 180
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHP 394
+ GS RRG + GD+DV+ P
Sbjct: 181 RVEAAGSLRRGAETIGDVDVLAAVP 205
>gi|206895366|ref|YP_002246803.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
gi|206737983|gb|ACI17061.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
Length = 571
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 29/209 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ + + ++ I G+ R +Y +A +E L IE ++ +PGIG+S
Sbjct: 3 NQEVANLLRQIAKILEIKGDSTFRIRAYEEAATRVENLAEPIEDIWKRGELTNVPGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I+E + TGK S LE KD + EV GIGP A +LY E G +++++L
Sbjct: 63 IAAKIEEYLKTGKSSYLEEISKDIPKGLFEMM-EVPGIGPRLAWRLYTEAGIQSIEEL-- 119
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-------EVLPEVI------- 370
E +L + GL+ F ++ + ++ ++ Q +G ++ VI
Sbjct: 120 ERALVEHKLQGLRGFG---AKMEKKLLDGIQMYRQLSGRIPLYLALPIVHNVITYLKGHA 176
Query: 371 ----ILCGGSYRRGKASCGDLDVVIMHPD 395
I GS RRG+A GD DV++ D
Sbjct: 177 KFVDIAPAGSLRRGRADIGDCDVLVATDD 205
>gi|134299491|ref|YP_001112987.1| phosphotransferase domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134052191|gb|ABO50162.1| PHP C-terminal domain protein [Desulfotomaculum reducens MI-1]
Length = 569
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 33/206 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVK---GLPGIGKS 265
N + IF +L ++ GED +Y +A VI K+ ++ + K LPG+GK+
Sbjct: 3 NIEVAWIFTELADLLELNGEDIYKIRAYRRAAEVIAKVEEPLQELHRRKLLSKLPGVGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
++ I+EI+ TGKL+K + ++ + + + ++ GIGP A+ LY E G L +L
Sbjct: 63 IEGKIEEILETGKLAKHQKLLQEIPLGVLEI-KQLPGIGPNRARTLYKELGISNLAEL-- 119
Query: 325 EDSLTHSQRLGLKYFD-----DI------------KTR--IPRHEVEQMERLLQKAGEEV 365
E ++ Q LK F DI +TR + R E++ + + +
Sbjct: 120 EQAVQQRQVRTLKGFSAKVEWDILNGIEMIRNRRGRTRLSVSRELAEELIKFFK-----L 174
Query: 366 LPEVI-ILCGGSYRRGKASCGDLDVV 390
LP + I GS RR K + GDLD+V
Sbjct: 175 LPGTVEIEVAGSTRRWKETVGDLDLV 200
>gi|386360348|ref|YP_006058593.1| DNA polymerase IV [Thermus thermophilus JL-18]
gi|383509375|gb|AFH38807.1| DNA polymerase IV (family X) [Thermus thermophilus JL-18]
Length = 575
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +YY+A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKEALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 180 VERAELC-GSARRYKDTVGDLDFLV 203
>gi|119946681|ref|YP_944361.1| helix-hairpin-helix DNA-binding protein [Psychromonas ingrahamii
37]
gi|119865285|gb|ABM04762.1| Helix-hairpin-helix DNA-binding protein [Psychromonas ingrahamii
37]
Length = 282
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKG------LPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y+ A ++ L + Q KG LP IG + I E V TG++S+LE
Sbjct: 28 RYQAYFHAANTLDNLSEDLRELVQAKGMKGLTDLPAIGSGIAQCIYEYVATGRISRLESL 87
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYFDD 341
+ + I LF + +G AQ++Y++ H TL+ L+N L + LG+K +
Sbjct: 88 QGESD--PIGLFQSIPTVGRTLAQRIYDRLHIDTLESLENATRNGQLDKVEGLGVKRKEA 145
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI---MHPDRK 397
I++ + +H E+ R A ++P ++L + R KA+ G L + +PD K
Sbjct: 146 IESWLLKHFSER--RQTSIAASSLIPVGLLLKVDTEYRSKAAAGKLPQITPKRFNPDNK 202
>gi|9964524|ref|NP_064992.1| putative DNA polymerase beta/AP endonuclease [Amsacta moorei
entomopoxvirus 'L']
gi|9944733|gb|AAG02916.1|AF250284_210 AMV210 [Amsacta moorei entomopoxvirus 'L']
Length = 612
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 31/204 (15%)
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP---FKIESAD--------------Q 255
I + K +IY L E + ++ A VI+ P FK ++ + +
Sbjct: 301 ILLVLNKFADIYNILNEIKYK-AFLNAAYVIQNTPVIIFKYKNVNNKFILNESKENIIQK 359
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
K L IG S+ D I E+++T K+ KL + E + + I + + IGP AQ L +
Sbjct: 360 YKNLKSIGTSISDIIYELLSTNKVEKLINLENNSSYKYIKILTSILFIGPKKAQSLLKLN 419
Query: 316 HRTLDDL-------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+ ++DL N LT + ++Y D++ + R+ + +++ + + E E
Sbjct: 420 IKNINDLIEKKDNIINMGILTIHEIKIIEYIKDMEP-VSRNFINDLKQNINLSSE---CE 475
Query: 369 VIILCGGSYRRGKASCGDLDVVIM 392
IL GSY RG D+D++I+
Sbjct: 476 WYIL--GSYARGLDYSKDIDILII 497
>gi|333923402|ref|YP_004496982.1| PHP domain-containing protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748963|gb|AEF94070.1| PHP domain protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 569
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N + IF +L ++ GED + +Y +A + L + ++ + +PGIGK+
Sbjct: 3 NIEVAWIFAELADLLELKGEDFFKVRAYRRAAKTLANLELPLVELNRRGLIGKIPGIGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
++ I+EI+ TG+L+K + ++ + + + GIGPA A+ L+E+ G + LD+L
Sbjct: 63 IETKIKEILVTGQLAKHQQLLQEIPPGVLEI-KRLPGIGPARARVLFEQLGIKDLDEL-- 119
Query: 325 EDSLTHSQRLGLKYFD-----DIKT---RIPRHEVEQMERLLQKAGEEVLPEVIILCG-- 374
E ++ + LK F DI I R + + ++ +E++ + IL G
Sbjct: 120 ERAVKERRVRNLKGFSAKMEWDILNGIQMIRRRHGRVLLSVARELAQELIEYIRILPGVS 179
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GDLD+V D
Sbjct: 180 QVEVTGSTRRWRETVGDLDLVAAATD 205
>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
Length = 579
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 31/191 (16%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G R+ SY KA + P + D+ ++ +PG+G S + I E + +G++ LE
Sbjct: 24 GNAFRARSYEKAARSVGGYPGDLAHLDEAGLRAIPGVGDSTAEKISEYLASGRMEALESL 83
Query: 286 EKD--EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYF 339
VR ++ ++ G+GP TA LY K G +++D+L+ + L LG K
Sbjct: 84 RAKIPPGVREVT---QIPGVGPKTAVLLYRKLGIKSVDELRKAADAGKLKGLPGLGEKTV 140
Query: 340 DDIKTRIPRHEVEQMER-----LLQKA---GEEVLPEVIILCG-------GSYRRGKASC 384
++I RH +EQ+ + LL A E+++ E+ + G GS RR + +
Sbjct: 141 ENI-----RHGIEQLSQASGRTLLSIALDLAEDLVAELGAVPGCKKCDYAGSLRRMRETV 195
Query: 385 GDLDVVIMHPD 395
GD+D++ D
Sbjct: 196 GDIDILATAKD 206
>gi|323702092|ref|ZP_08113760.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323532974|gb|EGB22845.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 569
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N + IF +L ++ GED + +Y +A + L + ++ + +PGIGK+
Sbjct: 3 NIEVAWIFAELADLLELKGEDFFKVRAYRRAAKTLANLELPLVELNRRGLIGKIPGIGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
++ I+EI+ TG+L+K + ++ + + + GIGPA A+ L+E+ G + LD+L
Sbjct: 63 IETKIKEILVTGQLAKHQQLLQEIPPGVLEI-KRLPGIGPARARVLFEQLGIKDLDEL-- 119
Query: 325 EDSLTHSQRLGLKYFD-----DIKT---RIPRHEVEQMERLLQKAGEEVLPEVIILCG-- 374
E ++ + LK F DI I R + + ++ +E++ + IL G
Sbjct: 120 ERAVKERRVRNLKGFSAKMEWDILNGIQMIRRRHGRVLLSVARELAQELIEYIRILPGVC 179
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GDLD+V D
Sbjct: 180 QVEVTGSTRRWRETVGDLDLVAAATD 205
>gi|7245791|pdb|1DK3|A Chain A, Refined Solution Structure Of The N-Terminal Domain Of Dna
Polymerase Beta
gi|157830402|pdb|1BNO|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of Dna
Polymerase Beta, Minimized Average Structure
gi|157830403|pdb|1BNP|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of Dna
Polymerase Beta, 55 Structures
Length = 87
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLE 283
+ I E + TGKL KLE
Sbjct: 71 EKIDEFLATGKLRKLE 86
>gi|367007543|ref|XP_003688501.1| hypothetical protein TPHA_0O00980 [Tetrapisispora phaffii CBS 4417]
gi|357526810|emb|CCE66067.1| hypothetical protein TPHA_0O00980 [Tetrapisispora phaffii CBS 4417]
Length = 565
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
GE R+ SY A I K F I+S Q K + IG S+ I ++ G L L
Sbjct: 203 GEKFRARSYQLAADSILKAQFAIKSGHQAQKNMMHIGPSISRKIDILLKEGTLPGLS--V 260
Query: 287 KDEKVRTISLFGEVWGIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
K EK I+ F IG A+K + L+ + T G+ Y++D
Sbjct: 261 KSEKDDNIAYFMGCHNIGIGLAKKWELLKIKTFKEALEKQPTDFQTTWPTLFGISYYEDW 320
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
I R E E+ + +Q + + + GSYRRG +CGD+D++
Sbjct: 321 SRPIMREECEEHLKTVQDELRLIDKDCKVELQGSYRRGAKTCGDIDLLF 369
>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
Length = 570
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
+N++I ++ ++ +I+ + + +Y KA I + I KG +PG+
Sbjct: 2 INRDIAKLLYEIADIFEYKEVEWKPRAYRKAARKIGDMREDISGLYSKKGREGLENIPGV 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDD 321
G + DHI E + G + + E K E R S ++ G+GP A+KL E +++ D
Sbjct: 62 GSRIADHIVEYIEAGSVREFEKIRK-ETPRGASNIIKIRGLGPKKAKKLMDELDIQSIPD 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-------- 370
LK N + + G K +++ I ++E + ER+L ++ E+I
Sbjct: 121 LKEAINNQEIRKLEGFGKKTEENLDKAISQYE-KSHERMLLPKATDLAEEIISYMEENTT 179
Query: 371 ---ILCGGSYRRGKASCGDLDVVIMHPD 395
I GS RR K + GD+D++++ D
Sbjct: 180 LKKIDYAGSLRRMKETIGDIDILVVASD 207
>gi|7245790|pdb|1DK2|A Chain A, Refined Solution Structure Of The N-Terminal Domain Of Dna
Polymerase Beta
Length = 86
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 10 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 69
Query: 268 DHIQEIVTTGKLSKLE 283
+ I E + TGKL KLE
Sbjct: 70 EKIDEFLATGKLRKLE 85
>gi|325294733|ref|YP_004281247.1| PHP domain-containing protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 574
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 33/155 (21%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
LPGIG+ +Q I E + TGK+ + E ++ SL ++ G+GP T + LYE G R
Sbjct: 56 LPGIGQKLQAKIIEFLKTGKIEEFEKLKQQVPDTIFSLL-DIPGVGPKTVKLLYETLGIR 114
Query: 318 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-- 372
+++DLK + L GLK + IK I LL+K G +L V +
Sbjct: 115 SVEDLKRAIEKGELLKLPGFGLKKVEKIKKGI---------ELLEKNGGRILLGVAVFIA 165
Query: 373 -----------------CGGSYRRGKASCGDLDVV 390
GS RR K + GD+D++
Sbjct: 166 DRIINLLKEHSAVERISVAGSTRRMKETVGDIDIL 200
>gi|290559313|gb|EFD92648.1| PHP domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 569
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 16/156 (10%)
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
I A ++ L G+GKS+ + I E + TGK+ K + ++D + ++ F ++ G+GP
Sbjct: 47 IYKAGKLTQLEGVGKSIAESITEYIETGKIKKYDKLKRDYPI-DLTTFRKIRGLGPKRVY 105
Query: 310 KLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KA 361
LY+K + LDDLK+ + + + G K D++K I + ERLL
Sbjct: 106 FLYKKLKIKNLDDLKSAIESHKIMNLEGFGEKSEDELKRSIESFMSIKEERLLLGYVIDY 165
Query: 362 GEEVLPEVI-------ILCGGSYRRGKASCGDLDVV 390
E ++ +++ + GS RR K + GD+D++
Sbjct: 166 TENIINKLVKSGFFEKVKIAGSMRRMKETIGDIDIL 201
>gi|344201179|ref|YP_004785505.1| PHP domain-containing protein [Acidithiobacillus ferrivorans SS3]
gi|343776623|gb|AEM49179.1| PHP domain protein [Acidithiobacillus ferrivorans SS3]
Length = 576
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLP----FKIESADQVKGL 259
P LN +I IF ++ ++ ED F +Y A +++ L +ES + + L
Sbjct: 2 PVLNPDIARIFDEIADLLEI--EDANPFRVRAYRNAARLVQGLSNDVKTMVESGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------- 312
PGIG + I EIVTTG S LE EK L +V G+GP + L+
Sbjct: 60 PGIGDDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHELDVET 118
Query: 313 ---------EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
EK R++ K E + + L I + R LQ
Sbjct: 119 VEQLARAAQEKRIRSIPGFGEKTEARIQKTLLAHLAAVPRFPIAIAAPYAAALVRYLQN- 177
Query: 362 GEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
+P V ++ GS+RRGK + GDLD++
Sbjct: 178 ----IPGVRRVVVAGSFRRGKDTVGDLDIL 203
>gi|196231131|ref|ZP_03129991.1| PHP domain protein [Chthoniobacter flavus Ellin428]
gi|196224961|gb|EDY19471.1| PHP domain protein [Chthoniobacter flavus Ellin428]
Length = 584
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 235 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y A IE + A +++ + G+GK++ D + E++ TG L E+ + +
Sbjct: 32 AYTNAARAIETYSGDLAKAAGENRLAEISGVGKAIADKLTELIVTGHLMYYENLKAEFPP 91
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRT----LDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
+F ++ GIGP + L+EK + T L+ + + G K D+I I
Sbjct: 92 GIFEMF-DLQGIGPKKIKALWEKLNVTTIAELEKACKDGRVAALSGFGKKTSDNILAAIQ 150
Query: 348 -------RHEVEQMERLLQKAGEEV--LPEVIILC-GGSYRRGKASCGDLDVVI 391
R + ++ + ++ EE+ LP+V+ C GSYRR K GDLD ++
Sbjct: 151 SRAKHAGRFRLGEIAKDAERMLEELRGLPDVLQACVAGSYRRNKEVVGDLDFIV 204
>gi|257075819|ref|ZP_05570180.1| PHP domain protein [Ferroplasma acidarmanus fer1]
Length = 572
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 63/228 (27%)
Query: 214 TEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLP------FKIESADQVKGLPGIG 263
+EI G N+Y L D ++ +Y + ++ +P + D + +PG+G
Sbjct: 4 SEIAGIFENLYNILSIDEKTKFEALAYQRVARELQSMPDDVSDLYDKYGIDGLMKIPGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K + HI E + TGK+ K E + + + LF + G+GP A LY+K
Sbjct: 64 KGITQHIIEYLKTGKIEKYEKIKSEYPIDFGDLF-RIEGLGPKKAILLYKK--------- 113
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL----------- 372
LG+K +D+K H++ + +K+ E +L + +L
Sbjct: 114 ----------LGIKNLNDLKKAAEEHKIADIPGFGKKSEELILKNISMLASLHGRILLAQ 163
Query: 373 --------------------C--GGSYRRGKASCGDLDVVIMHPDRKR 398
C GS RR K + GD+D++ D K+
Sbjct: 164 GLNEARKIISYLTKSDFIDRCFIAGSTRRMKETLGDIDILATSKDSKK 211
>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
gi|374074063|pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
gi|374074064|pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
gi|374074067|pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|374074068|pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
Length = 575
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 180 VERAELC-GSARRYKDTVGDLDFLV 203
>gi|385867296|pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 180 VERAELC-GSARRYKDTVGDLDFLV 203
>gi|397773040|ref|YP_006540586.1| PHP domain protein [Natrinema sp. J7-2]
gi|397682133|gb|AFO56510.1| PHP domain protein [Natrinema sp. J7-2]
Length = 583
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ Q + G K +I + +LL +A ++VL +
Sbjct: 123 ETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPAVD 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPD 395
C GS RR + + GD+DV+ D
Sbjct: 183 RCEVAGSIRRWRETVGDVDVLAATAD 208
>gi|385867297|pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 180 VERAELC-GSARRYKDTVGDLDFLV 203
>gi|381190731|ref|ZP_09898248.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
gi|380451440|gb|EIA39047.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
Length = 575
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 321 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 367
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRGLP 178
Query: 368 EV--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 179 GVERAELC-GSARRYKDTVGDLDFLV 203
>gi|384431336|ref|YP_005640696.1| PHP domain-containing protein [Thermus thermophilus SG0.5JP17-16]
gi|333966804|gb|AEG33569.1| PHP domain protein [Thermus thermophilus SG0.5JP17-16]
Length = 575
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 321 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 367
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LP 178
Query: 368 EV--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 179 GVERAELC-GSARRYKDTVGDLDFLV 203
>gi|344940156|ref|ZP_08779444.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter
tundripaludum SV96]
gi|344261348|gb|EGW21619.1| helix-hairpin-helix DNA-binding, class 1 [Methylobacter
tundripaludum SV96]
Length = 297
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 215 EIFGKLINIYRALGEDR----RSFSYYKAIPVIEKLPFKIESADQVKG------LPGIGK 264
EI KL I L E R R +Y A IE + +E +G LPGIG+
Sbjct: 6 EIASKLRQIADLLDEQRANPFRVSAYLNAAKTIETMTEAVEDLLGREGFSALLELPGIGE 65
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ I E V TG++S+LE + I+LF ++ GIGP +A ++ E H +D L+
Sbjct: 66 GIARSINEYVMTGRMSRLESLQSGHD--PIALFEQIPGIGPRSAHRIIETLH--IDTLEA 121
Query: 325 EDSLTHSQRL 334
+ H+ RL
Sbjct: 122 LELAAHNGRL 131
>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
Length = 575
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVI 391
V LC GS RR K + GDLD ++
Sbjct: 180 VERAELC-GSARRYKDTVGDLDFLV 203
>gi|448346157|ref|ZP_21535045.1| PHP domain protein [Natrinema altunense JCM 12890]
gi|445633167|gb|ELY86367.1| PHP domain protein [Natrinema altunense JCM 12890]
Length = 583
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGGIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 370
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVTGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATAD 208
>gi|312143800|ref|YP_003995246.1| PHP domain-containing protein [Halanaerobium hydrogeniformans]
gi|311904451|gb|ADQ14892.1| PHP domain protein [Halanaerobium hydrogeniformans]
Length = 575
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 210 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK I +I + ++ GE D + +Y A IE L I S D++K + GIG
Sbjct: 6 NKEIAKILNEFADLLAIKGENDFKIRAYSNAARKIESLSDDISSLAAEDKLKEIKGIGSG 65
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ + + EI+ G + ++E K E + + G+GP TA + Y E G L L+N
Sbjct: 66 IAETLMEILENGIIEEMETI-KAELPHGVVEMTNIPGLGPKTAHRFYYELGIEDLISLEN 124
Query: 325 -----------------EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
E+ L H + KY D I I ++ ++ + E+V
Sbjct: 125 ALKEAKVRELKGFGKKSEEKLLHGLKNYEKYVDKI---ILSEALKTAGIIIAEIKEKVES 181
Query: 368 EV---IILCGGSYRRGKASCGDLDVVI 391
E I +CG S RRGK GDLD++I
Sbjct: 182 EYFSQIEVCGSS-RRGKEMTGDLDILI 207
>gi|336476630|ref|YP_004615771.1| PHP domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335930011|gb|AEH60552.1| PHP domain protein [Methanosalsum zhilinae DSM 4017]
Length = 573
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 235 SYYKAIPVIEKLP------FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+Y KA IE L ++ E + +K + GIG ++ HI E + TGK+ K E +K
Sbjct: 28 AYRKAARGIENLTEDISDIYEREGTEGLKSITGIGSNICTHIVEYLKTGKIEKFEKLKK- 86
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN---EDSLTHSQRLGLK----YFD 340
+ + S E+ G+GP T +KL+ E +++ DL++ + + + +G K +
Sbjct: 87 QSMSGASELIEIEGLGPKTIRKLHDELDIKSISDLRDAILKHKIQELEGMGEKTEQNLLE 146
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEV-------IILCGGSYRRGKASCGDLDVV 390
I+ HE Q++ ++ A E+V+ + II GS RR K + GD+DV+
Sbjct: 147 AIRNFEKSHERMQIDVAIETA-EDVISYLKEQNKPDIINYAGSLRRMKETIGDIDVL 202
>gi|414153032|ref|ZP_11409359.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455414|emb|CCO07261.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 569
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 29/209 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKS 265
N I IF +L ++ GED Y KA+ +E+ ++ + ++ +PGIGK+
Sbjct: 3 NFEIAWIFSELADLLEIKGEDFFKVRAYRRAAKALARLEQPVQELYRSGKLSQVPGIGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------------- 312
+ I+EI+ TGKL+K + K+ +++ ++ GIG A+ L+
Sbjct: 63 IAAKIKEIIETGKLAKHQELLKEIPAGVLAV-RQLPGIGAGRARALFKELAITDLTELEQ 121
Query: 313 ---EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
E+ R+L K E + H + + I+ + R +++ ++ +LP
Sbjct: 122 AAKERKVRSLKGFSAKLESDILHGIEMMRNRQNSIRLSVARELAAELKEFIK-----LLP 176
Query: 368 EVIILC-GGSYRRGKASCGDLDVVIMHPD 395
V + GS RR + + GDLD+V+ D
Sbjct: 177 GVKAVSEAGSTRRWRDTVGDLDLVVAADD 205
>gi|20067725|emb|CAD29103.1| chimeric DNA-directed DNA polymerase xf3-9d [synthetic construct]
Length = 207
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 72
>gi|20067727|emb|CAD29104.1| chimeric DNA-directed DNA polymerase xf3-9e [synthetic construct]
Length = 205
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 72
>gi|448337012|ref|ZP_21526097.1| PHP domain protein [Natrinema pallidum DSM 3751]
gi|445627007|gb|ELY80339.1| PHP domain protein [Natrinema pallidum DSM 3751]
Length = 583
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 21/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVETIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 370
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVKGFGPKTERNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATAD 208
>gi|448369652|ref|ZP_21556204.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
gi|445650827|gb|ELZ03743.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
Length = 593
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 PEV-----IILC--GGSYRRGKASCGDLDVVIMHPDRK 397
E+ + C GS RR + + GD+DV++ D +
Sbjct: 173 AELEGIEEVERCEVAGSIRRWRETIGDVDVLVGTNDNE 210
>gi|374311659|ref|YP_005058089.1| PHP domain-containing protein [Granulicella mallensis MP5ACTX8]
gi|358753669|gb|AEU37059.1| PHP domain protein [Granulicella mallensis MP5ACTX8]
Length = 628
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 232 RSFSYYKAIPVIEKLPFKIES-----AD--QVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 284
R SY +A +E+ ++ + AD + +PGIGK M +I+++V TG + E
Sbjct: 42 RIRSYRRAAEAVEQQTTRLATLATPDADPKALLAIPGIGKGMAQNIRDLVATGSMPLREE 101
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL----KNEDSLTHSQRLGLKYF 339
+ + + L + G+GP T L+ +D L K D LT R+G K+
Sbjct: 102 LLQKYRPTMLELL-RLPGMGPKTVAMLHSALQIADIDALEAAAKRGDLLTLP-RMGQKFT 159
Query: 340 DDIKTRIPRHEVEQMERLLQKAGE--EVLPEVI--------ILCGGSYRRGKASCGDLDV 389
D + I H + A E E + E+I I GS RRG+ +CGDLD+
Sbjct: 160 DKLIKGIEDHRRNASRFRIDVAREHAERISELIRQFPGIDTITPAGSLRRGRETCGDLDL 219
Query: 390 VIMHP 394
++ P
Sbjct: 220 LVTGP 224
>gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus]
Length = 320
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 102/216 (47%), Gaps = 37/216 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + +F ++ + LG++ R +YY+A + L IE + KG LPGI
Sbjct: 3 NQELARVFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAK-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + D I E + TG++ K E E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLADKILEFLATGRVKKDE--ELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLE 119
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMER-LLQKAGEE 364
LK ++L L LK F K R P V + R LL++
Sbjct: 120 KLK--EALERGDLLRLKGFGAKKAERIKEGLLLAQAAGKRRPLGAVLFLARNLLEQ--NR 175
Query: 365 VLPEV--IILCGGSYRRGKASCGDLDVVI--MHPDR 396
LP V LC GS RR K + GDLD ++ + P++
Sbjct: 176 ALPGVKKAELC-GSARRYKDTVGDLDYLVASLEPEK 210
>gi|390559470|ref|ZP_10243802.1| PHP domain protein [Nitrolancetus hollandicus Lb]
gi|390173984|emb|CCF83096.1| PHP domain protein [Nitrolancetus hollandicus Lb]
Length = 594
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
N + ++ + + GE R +Y +A I+ + ++S A +++ +PG+G S
Sbjct: 5 NHEVAQLLNGIAELLALKGETPFRIRAYTEAAQYIDTMTEDVDSLYQAGRLEDIPGVGAS 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I E + TG S E + L EV GIGPA A L+ + G T+ L
Sbjct: 65 IATKIAEYLKTGHSSYYEQLRQQIPSSAAELL-EVPGIGPARAHLLFTRLGITTVRQLL- 122
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEV---EQMERLLQKAGEEVLPEVIILC-------- 373
+ + H R + + ++TRI R ++ +R+L A V EVI L
Sbjct: 123 QAAEAHQLRDLPGFGEQLETRIAREAARVTQRTQRMLLGAAVPVAEEVIQLLRDSSAVDA 182
Query: 374 ---GGSYRRGKASCGDLDVVI 391
GS RR + + GD+D+++
Sbjct: 183 IDPAGSLRRMRETIGDIDILV 203
>gi|94969416|ref|YP_591464.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
Ellin345]
gi|94551466|gb|ABF41390.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
Ellin345]
Length = 584
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 26/210 (12%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIE---SADQ-VKGLPGIGK 264
N+ + IF + ++ G+D R SY +A +E P +I S D+ V +PGIGK
Sbjct: 3 NRQLANIFYETADLMEVQGDDPFRIRSYRRAAEALESQPTQIADIISDDKAVLAIPGIGK 62
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLYEKGHRTLDDLK 323
M ++QEI G+L KL H E EK R L ++ G+GP T ++ + DL
Sbjct: 63 GMLLNLQEIFREGRL-KL-HAELLEKYRPSMLELLKIQGLGPKTIALIWSAFQ--VSDLA 118
Query: 324 NEDSLTHSQRL----------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
++L +L ++ + I R +Q + EV
Sbjct: 119 GVETLAREGKLRTLPRLSEKTEQKILKSIETYRSISGRFLIDTADQTAEKMIAHLREVKG 178
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
I GS RRG+ + GDLD+++ P K
Sbjct: 179 VEKITPAGSLRRGRETVGDLDILVTGPCAK 208
>gi|325111069|ref|YP_004272137.1| PHP domain-containing protein [Planctomyces brasiliensis DSM 5305]
gi|324971337|gb|ADY62115.1| PHP domain protein [Planctomyces brasiliensis DSM 5305]
Length = 584
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQ---VKGLPGIG 263
N I ++F +L ++ G + R +Y A I+ LP +E AD+ + L GIG
Sbjct: 3 NATIADMFDQLADLLELDGANGFRVRAYRNAARTIDALPDSLEEMIADESQKLTDLSGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
K + + I+ IV TG+L +LE ++ + + + G+GP L+ + H ++LD+L
Sbjct: 63 KDLAEKIRNIVETGELKQLEEYKAKIPADVMKML-RIPGLGPKKVAILFYELHLKSLDEL 121
Query: 323 KN--EDSLTHSQR-----------LGLKYFDDIKTRI----PRHEVEQMERLLQKAGEEV 365
K+ E+ + ++ GL++ + +R+ + VEQ+ L+ G
Sbjct: 122 KHAAENGVIAQKKGFGKKTEQLILEGLEHLEQSGSRMYLADAKPFVEQILSGLRGLGSVH 181
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
EV GS RR K + GDLD++ D
Sbjct: 182 QAEV----AGSVRRLKETIGDLDILATADD 207
>gi|452210459|ref|YP_007490573.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
gi|452100361|gb|AGF97301.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
Length = 584
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ + E+ + +I + + +Y +A IE IE + KG + G+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEISGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMLDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 370
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 371 --------ILCGGSYRRGKASCGDLDVV 390
I+ GS RR K + GD+D++
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDIL 209
>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
Length = 576
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N I+ +F ++ ++ LG++ R +Y +A V+ L IE + ++G+PGIG
Sbjct: 3 NAEISRLFQEMADMLEFLGDNPFRIRAYRQAARVLADLETPIEDLARQGPNTLEGIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ IQE + +GK++ E + + + + G+GP TAQ L+ + +D L
Sbjct: 63 PDLAAKIQEYLQSGKIAAHEELARKVPAGVLEVM-RIPGVGPKTAQLLWSR--LGVDSLA 119
Query: 324 NEDSLTHSQR-LGLKYFDDIK---------------TRIPRHEVEQMERLLQKAGEEVLP 367
+ S+R L L F + K R P V R L A LP
Sbjct: 120 KLRAALESKRVLELPRFGEKKRLRLLENLALAQSATQRRPLGSVLWRVRELL-AAIRGLP 178
Query: 368 EV-IILCGGSYRRGKASCGDLDVVI 391
+V C GS RR K + GDLD ++
Sbjct: 179 QVEQAECCGSVRRYKETVGDLDFLV 203
>gi|448330908|ref|ZP_21520184.1| PHP domain protein [Natrinema versiforme JCM 10478]
gi|445610744|gb|ELY64513.1| PHP domain protein [Natrinema versiforme JCM 10478]
Length = 598
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 21/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPAPIADRIEAGDREAVENIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ + E V TG + +LE + + I+ + G+GP TA KLY E G +TLDDL
Sbjct: 64 DAISSKVIEYVETGTIEELEDLRSELPI-DIADITRIEGVGPKTAGKLYRELGVQTLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ Q + G K +I + +LL +A ++VL + +
Sbjct: 123 EAAAEAGEVQEVKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESIDAVE 182
Query: 372 LC--GGSYRRGKASCGDLDVV 390
C GS RR + + GD+DV+
Sbjct: 183 RCEVAGSIRRWRETIGDVDVL 203
>gi|225873244|ref|YP_002754703.1| PHP domain-containing protein [Acidobacterium capsulatum ATCC
51196]
gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
Length = 580
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
G+ R SY +A +E + + A +++ +PGIGK M +I +I TG
Sbjct: 22 GDSFRIRSYRRAAEAVEATTVTLATIAGDAKKLQEIPGIGKGMAANIAQIEETGSFDLRR 81
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNEDSLTHSQRLGLKYF 339
+ + L ++ G+GP T L+ TL+ L R G K
Sbjct: 82 ELLEKYNASILELL-KLPGMGPKTVALLFSALKVDSIETLEAALKAGKLNGLPRFGKKLI 140
Query: 340 DDIKTRIP---RHEVEQMERLLQKAGEEVLPEVIILCG-------GSYRRGKASCGDLDV 389
D+IK I +H + + Q+A +E+ + L G GS RRG+ + GDLD+
Sbjct: 141 DNIKKGIEEYRQHHGRFLVSVSQRAADEIAEYLRKLEGIETVTPAGSTRRGRETAGDLDL 200
Query: 390 VIMHP 394
++ P
Sbjct: 201 LVTGP 205
>gi|147678282|ref|YP_001212497.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
[Pelotomaculum thermopropionicum SI]
gi|146274379|dbj|BAF60128.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
[Pelotomaculum thermopropionicum SI]
Length = 567
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 19/200 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK----AIPVIEKLPFKIESADQVKGLPGIGKS 265
N + IF +L ++ GED Y+ + +E+ +I ++ +PGIGK+
Sbjct: 3 NFEVAWIFHELADLLEFKGEDFFKIRAYRNAARVLACLEEPLEEIWKRGELAKIPGIGKN 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ I E++ TG L K E ++ + + + GIGP A +Y K G +L++L
Sbjct: 63 IAAKINEVLATGHLKKHEELLQEIPPGLLEIMS-LPGIGPKRAGLIYRKLGVASLEELAR 121
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE---------EVLPEVI-I 371
E + +G K DI I E LL A E ++LP V +
Sbjct: 122 AAREGRVRSLPGMGSKTESDIIRNIEMREDRAGRVLLATARELAGELAGFLKILPGVSRV 181
Query: 372 LCGGSYRRGKASCGDLDVVI 391
GGS RR + + GD+D+V+
Sbjct: 182 EAGGSLRRWQETVGDIDLVV 201
>gi|406899026|gb|EKD42415.1| hypothetical protein ACD_73C00166G0001, partial [uncultured
bacterium]
Length = 507
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 235 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y KA V+E+ IE ++ L GIG+++ + I ++V TGKL E + +
Sbjct: 29 AYEKAARVLEQESRDIEELVERGELSALAGIGETLNEKITQLVKTGKLKFYEDLKAEIPE 88
Query: 292 RTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP 347
I L E+ GIGP A+ L Y+ G +++ +L+ E+ L + G K D+I I
Sbjct: 89 GLIQL-NELPGIGPKKARHLFYDLGLQSIGELEYACQENRLLKLKSFGEKTQDNILKAIK 147
Query: 348 RHEVEQMERL----LQKAGEEV------LPEVIILCGGSYRRGKASCGDLDVVI 391
++ L L +A E V +P + I GS RR K + GD+D+V+
Sbjct: 148 FYKKSHKRFLIPVALAQAQEFVDYLKAKIPHLKIEIAGSLRRKKETIGDIDLVV 201
>gi|116619976|ref|YP_822132.1| phosphotransferase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223138|gb|ABJ81847.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 581
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 263
NK I + + ++ GED R SY +E P +I ++A +V +PGIG
Sbjct: 8 NKEIARVLWETADLMEIAGEDGFRIRSYRNGATAVEGYPERIVDILRDAARKVTDIPGIG 67
Query: 264 KSMQDHIQEIVTTGKLSK----LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RT 318
K + + EI G + L F T F ++ G+GP + ++E T
Sbjct: 68 KGLAQVLIEITERGSCERRDLLLAKFPP-----TALEFLKIQGLGPKSIALIFEHFRTST 122
Query: 319 LDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--EEVLPEVI--- 370
+D+L+ E L R+G K + + I ++ LL A + L EV+
Sbjct: 123 IDELERLCQEQKLRDLPRMGAKLEEKVLRSIAQYRQRTGRYLLSYAEGMAQELAEVLGKT 182
Query: 371 -----ILCGGSYRRGKASCGDLDVVIMHP 394
+ GS RRG+ + GDLD+++ P
Sbjct: 183 PGVDRVTTAGSLRRGRETVGDLDLLVTGP 211
>gi|195953813|ref|YP_002122103.1| PHP domain-containing protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 576
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 262
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLTTNQIHGI 63
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
G+S + I+E + TG++ K H+E +KV + + + GIGP T + LY+ +
Sbjct: 64 GESSLEKIEEYLKTGRIKK--HYEFLQKVPKELLDIMDAPGIGPKTLKTLYD-----VFG 116
Query: 322 LKNEDSLTHS---------QRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-- 367
+KN++ L + + G K ++IK I E + + +A +++L
Sbjct: 117 IKNKEELLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILSYM 176
Query: 368 ----EVI-ILCGGSYRRGKASCGDLDVVI 391
E+I I GS RR K + GD+D+++
Sbjct: 177 KGCKEIINISVAGSLRRMKETIGDIDILV 205
>gi|385799732|ref|YP_005836136.1| PHP domain-containing protein [Halanaerobium praevalens DSM 2228]
gi|309389096|gb|ADO76976.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
Length = 575
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 210 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK I +I + ++ GE D + +Y A IE KI + +++K + GIG
Sbjct: 6 NKEIAKILSEFADLMAIKGENDFKIKAYTNAARQIESYQTKISELVATNELKEIKGIGSG 65
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-----------EK 314
+ + I E++ G +S++E + + I + + G+GP TA + Y EK
Sbjct: 66 IAETITELLENGSISEMEAIKAELPPGVIEM-TNIQGLGPKTAHRFYYELEIEDLERLEK 124
Query: 315 GHRT--LDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+T + LK +E L + + KY D I Q+ + ++ + L
Sbjct: 125 ALQTGKIQKLKGFGKKSEAKLLKALKNHEKYVDKINLNKALKTANQIIKKIKHQVDSSLF 184
Query: 368 EVIILCGGSYRRGKASCGDLDVVI 391
I +CG S RR K GDLD++I
Sbjct: 185 SQIEVCGSS-RRAKEMTGDLDILI 207
>gi|339435|gb|AAA61136.1| terminal deoxynucleotidyltransferase, partial [Homo sapiens]
Length = 238
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 317 RTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
RTL ++++ SL T Q+ G Y++D+ + + R E E + L+++A LP+ +
Sbjct: 2 RTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMT 61
Query: 375 GSYRRGKASCGDLDVVIMHP 394
G +RRGK D+D +I P
Sbjct: 62 GGFRRGKKMGHDVDFLITSP 81
>gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271]
gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
Length = 574
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKG------LPG 261
+N +I IF K+ ++ L + R +Y A I L + AD V LPG
Sbjct: 4 VNADIETIFRKVADLLDILNANPFRIRAYRNAAATIAGLSRDV--ADMVSRNEDLTRLPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHR 317
IG+ + I EIV TG L L+ EK+ + S E+ G+GP + LY+ +
Sbjct: 62 IGRDLSKKILEIVETGHLRFLDTLEKNAHA-SFSELMEIPGLGPRKVKALYDALDIRNIE 120
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILC- 373
L++ + + G K +I I R + E+ R+ +A E L + C
Sbjct: 121 ELEEAAEQGRIALVAGFGKKSQQNILKEIVRRK-ERSRRITYQAAMFAAEPLLSYLRACD 179
Query: 374 -------GGSYRRGKASCGDLDVVI 391
GS+RR + + GDLD+++
Sbjct: 180 DITQVAIAGSFRRCRETIGDLDLLV 204
>gi|82702030|ref|YP_411596.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
gi|82410095|gb|ABB74204.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
Length = 598
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 20/204 (9%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPG 261
P N +I +F ++ N+ G + R +Y A+ I L + +E+ + + LPG
Sbjct: 2 PSHNADIAAVFEEIANLLEIEGANPFRIRAYRNAVQAIGALSTEAYVLLENKEDLTELPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
IG+ + I+EI+ TG + L+ + + L +V G+GP + LY + +T++
Sbjct: 62 IGRDLAGKIEEIIATGHCALLDRLQTELPPAVTELL-KVPGLGPKRVRHLYHDLDVQTVE 120
Query: 321 DL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC---- 373
L E + G K +I I H ++ L A + P L
Sbjct: 121 QLYGAAREGRIRALSGFGEKTELNILQAIEAHTDQKGRFKLAVAAQYAEPLRAFLADVPG 180
Query: 374 ------GGSYRRGKASCGDLDVVI 391
GSYRR + + GDLD+V+
Sbjct: 181 VKEAIVAGSYRRMRETVGDLDIVV 204
>gi|448362121|ref|ZP_21550733.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
gi|445648991|gb|ELZ01935.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
Length = 594
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQTELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRK 397
E + C GS RR + + GD+DV++ D +
Sbjct: 173 AFLEGIEEVERCEVAGSIRRWRETIGDVDVLVGTNDNE 210
>gi|149919633|ref|ZP_01908112.1| PHP-like protein [Plesiocystis pacifica SIR-1]
gi|149819576|gb|EDM79004.1| PHP-like protein [Plesiocystis pacifica SIR-1]
Length = 743
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKGLP---GI 262
P N I +F ++ ++ + G DR R ++ ++ +IE LP + LP G+
Sbjct: 2 PLENTEIAAMFVEMADLLQIKGGDRHRVGAFRRSARIIEGLPRPAAQMLERGELPKIRGV 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
GK I++++ L+ + + L ++ GIGP + ++ + G TLD
Sbjct: 62 GKGTIHRIKQMLRRHSCDDLDELRRSVPLGLRELL-KIKGIGPTMVRNIHNRLGVTTLDQ 120
Query: 322 LKNED-----------SLTHSQRL--GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
L++ L+H+Q++ G++ + + + + E++ R + A E LP
Sbjct: 121 LEHAAKAGAIETIPRMGLSHAQKILAGIEAYRKRRGKTALIDAERVGRRIVAALRE-LPA 179
Query: 369 V-IILCGGSYRRGKASCGDLDVVIMHPD 395
V I GS RR KA+ GDLDV++ D
Sbjct: 180 VEGIALAGSVRRRKATIGDLDVLVATRD 207
>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
Length = 576
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 30/211 (14%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVK----GLPGIGK 264
N ++ IF ++ ++ G++ R +Y A + L F +++ + K LPGIG
Sbjct: 5 NTDVATIFNQIADLLEIKGDNPFRIRAYRNAARTLNTLAFSVQTMVKEKRNLTDLPGIGI 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
+ I EIVTTG + E + E +I + G+GP + LY E+ +TLD L
Sbjct: 65 DLAGKIVEIVTTGTCALREQLHR-ELPSSIHELLNLPGLGPKRVKALYQERNIQTLDQLY 123
Query: 324 NEDS-----------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-----EVLP 367
+ + QR+ L+ +++ R+ ++ E + AG + P
Sbjct: 124 SSACNGQIRNVPGFGIRTEQRI-LEAIRAQQSKKKRYRLDLAETI---AGSLLKYFQASP 179
Query: 368 EV-IILCGGSYRRGKASCGDLDVVI--MHPD 395
V I GS+RR + + GDLD++I HPD
Sbjct: 180 HVRKIDIAGSFRRRQETVGDLDILISSSHPD 210
>gi|357486113|ref|XP_003613344.1| hypothetical protein MTR_5g035500 [Medicago truncatula]
gi|355514679|gb|AES96302.1| hypothetical protein MTR_5g035500 [Medicago truncatula]
Length = 59
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 77 HLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLS 123
L FK ++ YQWLEDSL+ +K+SEDL +KLDP+ E I + ++S
Sbjct: 7 ELLTFKQRILLYQWLEDSLKSAQKLSEDLSVLKLDPQVEGIDEYLVS 53
>gi|299751308|ref|XP_001830191.2| DNA polymerase mu [Coprinopsis cinerea okayama7#130]
gi|298409314|gb|EAU91669.2| DNA polymerase mu [Coprinopsis cinerea okayama7#130]
Length = 664
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+QE + G +S+++ ++ RT+S F ++GIGP AQ Y+ G RT+ DL+
Sbjct: 296 VQEFLEKGSISEVQETLASDRYRTLSTFATIYGIGPGKAQHFYDMGMRTISDLE 349
>gi|398356135|ref|YP_006529462.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
gi|399995354|ref|YP_006575592.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|365182201|emb|CCE99051.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|390131382|gb|AFL54762.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
Length = 611
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 22/216 (10%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES----AD 254
P L+ N +I +F ++ ++ + R +Y +A IE LP +
Sbjct: 31 PDHLHTMTVHNADIAALFNRMADLLEIEAANPFRIRAYRRAASTIEDLPENVAQMMAEGR 90
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ LPGIG+ + I E V TG L LE E ++ + G+GP L++
Sbjct: 91 SLSDLPGIGEDLAGKIAEFVETGHLKSLEEVEA-RTPSALAALTAIPGLGPKRVHVLHQS 149
Query: 315 -GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR----IPRHE----------VEQMERLLQ 359
G TL+ L + H R ++ I+T+ I +H E R L
Sbjct: 150 LGITTLEQLAKA-AREHRVRELPRFSAAIETKILDEIAKHRTAEKRFKISTAEDFARGLV 208
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
L L GS+RR K + GDLDV+ D
Sbjct: 209 DYLRSALGITQTLVAGSFRRRKETVGDLDVLATCAD 244
>gi|431930766|ref|YP_007243812.1| DNA polymerase IV [Thioflavicoccus mobilis 8321]
gi|431829069|gb|AGA90182.1| DNA polymerase IV (family X) [Thioflavicoccus mobilis 8321]
Length = 578
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N+ I IF ++ ++ G D R +Y +A +I E L ++ + + LP IG+
Sbjct: 5 NREIAAIFEEIADLLEIEGADAFRVRAYREAARLIPGLAEGLAERVANGADLTELPSIGE 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I IV TG+L +LE + L ++ G+GP + L E G +L DL+
Sbjct: 65 AIAKKIAVIVETGRLPQLEEVRRRVPPSLRELL-QLGGLGPKRVKALREALGVASLADLR 123
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
L G K ++ R+ R + L +A E V P V L G
Sbjct: 124 QAVEAGKVHELPGFGEKTEAQLRERLARWQGPSSRTPLIEAEELVRPLVEHLRGGPGILD 183
Query: 375 ----GSYRRGKASCGDLDVVIMHPD 395
GS+RR + + GDLD+++ D
Sbjct: 184 LAVAGSFRRRRETVGDLDILVACDD 208
>gi|448340713|ref|ZP_21529683.1| PHP domain protein [Natrinema gari JCM 14663]
gi|445629653|gb|ELY82929.1| PHP domain protein [Natrinema gari JCM 14663]
Length = 583
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 25/208 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N + F + ++ A G + + +Y +A I P I AD+V + + G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPI--ADRVAEGDEAVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLD 120
Query: 321 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EV 369
DL+ Q + G K +I + +LL +A ++VL
Sbjct: 121 DLETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPA 180
Query: 370 IILC--GGSYRRGKASCGDLDVVIMHPD 395
+ C GS RR + + GD+DV+ D
Sbjct: 181 VDRCEVAGSIRRWRETVGDVDVLAATAD 208
>gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118]
gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118]
Length = 580
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 30/209 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA----DQVKGLPG 261
P N ++ +F ++ ++ G + R +Y A ++ +L + + +++ LPG
Sbjct: 2 PITNADVVAVFSEIADLLEIEGANPFRVRAYRNAARMLGELGRSVRTMVDRPEELDALPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
IG + I E+VTTG + L+ K E I+ ++ G+GP + L+ E G TL
Sbjct: 62 IGPDLAGKIVEVVTTGSCALLQRLRK-ELPPVITELLKIPGLGPKRVRTLHRELGIETLA 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK------AGEEVLPEVII--- 371
L+ +++ ++ + R +E RLLQ+ A E + + ++
Sbjct: 121 QLRQA-----AEQGRVQSVHGFGAKSERQILEATGRLLQQERRYKWADMEPVAQALLADL 175
Query: 372 ---------LCGGSYRRGKASCGDLDVVI 391
+ GS RRG+ + GDLD+++
Sbjct: 176 HATPGVHRAVAAGSLRRGRETVGDLDLLV 204
>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 578
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 24/202 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPF---KIESADQVKGLPGIGKS 265
NK++ I + +I GE+ R +Y +A IE L ++ AD++ +PG+G+
Sbjct: 3 NKHVARILQNIGDILEIRGENPFRVRAYRRAAHSIEALGVDLAELRRADRLTDIPGVGRD 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDD 321
+ I EI+ TG + + ++ + L V GIGP TA+ LYE+ G L+
Sbjct: 63 LAGKITEILDTGTCAYYDRLIREIPAGIVQLL-TVPGIGPRTARILYEELQISGLDELER 121
Query: 322 LKNEDSLTHSQRLGLKYFDDI----------KTRIPRHEVEQMERLLQ---KAGEEVLPE 368
L L + LG K + I + R+P V L +AG P
Sbjct: 122 LGRAGRLAELRGLGEKTQNKILSGLELVRRGRERLPLGRVYPFASALVETIRAGGA--PV 179
Query: 369 VIILCGGSYRRGKASCGDLDVV 390
I GS RR + + D+D+V
Sbjct: 180 ERISVAGSIRRFQDTVKDVDIV 201
>gi|406978458|gb|EKE00422.1| hypothetical protein ACD_22C00026G0002 [uncultured bacterium]
Length = 588
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 30/213 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLP---FKIESADQVKGLPGIG 263
NK +T+I +++ +D F +Y AI +E L F + A +++ +PG+G
Sbjct: 9 NKEVTQILKEILAAMEV--KDFNKFKIRAYQNAIASMEALTSSVFDMWQAGRLQEIPGVG 66
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT----- 318
+ H++E+ TTG + + + ++ L G + GIG A KL H T
Sbjct: 67 GGLSQHLEELFTTGDVKEFKLTKQGLPDGMFGLIG-IRGIGAKKAFKLATAFHLTKREEA 125
Query: 319 ---LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ--MERLLQKAGEEV-------- 365
L + + + + G K DI I ++ + +R+L E+V
Sbjct: 126 VEKLKEFAEQGKIRELEGFGEKSEKDILDAISEAKLNKNVKQRMLLITAEDVADRICEYI 185
Query: 366 --LPEV-IILCGGSYRRGKASCGDLDVVIMHPD 395
LP V ++ GS RR + + GDLD+V ++ D
Sbjct: 186 KRLPGVGDVIALGSLRRRQPTVGDLDIVAVYED 218
>gi|384439577|ref|YP_005654301.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
gi|359290710|gb|AEV16227.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
Length = 577
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 34/186 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
R +Y++A + L IE + + LPGIG + + I E + TG+L K H E
Sbjct: 26 RVRAYHQAARTLYDLDIPIEDLARGGKEALLALPGIGPDLAEKILEFLATGRLKK--HEE 83
Query: 287 KDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344
+KV R + V G+GP TA++LY E G +L+ LK +L L LK F K
Sbjct: 84 LAQKVPRGVLAVMAVPGVGPKTARQLYHELGIDSLEGLKA--ALERGDLLRLKGFGPKKA 141
Query: 345 ---------------RIPRHEVEQMERLLQKAGEEV--LPEV--IILCGGSYRRGKASCG 385
R P V + R L EE+ LP V LC GS RR + + G
Sbjct: 142 ERIREGLALAQAASQRRPLGAVLSLARGLL---EEIRRLPGVEKAELC-GSARRYQDTVG 197
Query: 386 DLDVVI 391
DLD ++
Sbjct: 198 DLDFLV 203
>gi|938280|emb|CAA48761.1| DNA polymerase beta [Rattus norvegicus]
Length = 54
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 345 RIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 1 RIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPN 51
>gi|34810809|pdb|1NZP|A Chain A, Solution Structure Of The Lyase Domain Of Human Dna
Polymerase Lambda
Length = 87
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEH 284
I EI+ +G L KL+H
Sbjct: 73 IIEILESGHLRKLDH 87
>gi|452944608|ref|YP_007500773.1| PHP domain protein [Hydrogenobaculum sp. HO]
gi|452883026|gb|AGG15730.1| PHP domain protein [Hydrogenobaculum sp. HO]
Length = 576
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 32/208 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 262
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLSSNQIHGI 63
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G+S + I+E + TG++ K + F + + + + GIGP T + LY+ + +
Sbjct: 64 GESSLEKIEEYLKTGRIKKHDEFLQKVPKELLDIM-DAPGIGPKTLKTLYD-----VFGI 117
Query: 323 KNEDSLTHS---------QRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL---- 366
KN++ L + + G K ++IK I E + + +A +++L
Sbjct: 118 KNKEELLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILNYMK 177
Query: 367 --PEVI-ILCGGSYRRGKASCGDLDVVI 391
E+I I GS RR K + GD+D+++
Sbjct: 178 GCKEIINISVAGSLRRMKETIGDIDILV 205
>gi|448348385|ref|ZP_21537234.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
gi|445642752|gb|ELY95814.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
Length = 593
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQEVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRK 397
+ + C GS RR + + GD+DV++ D +
Sbjct: 173 GFLEGIQEVERCEVAGSIRRWRETIGDVDVLVGTNDNE 210
>gi|408533755|emb|CCK31929.1| PHP domain protein [Streptomyces davawensis JCM 4913]
Length = 591
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 38/209 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 266
N + +F + ++ G D R+ Y KA I + + D +K +PG+GKS+
Sbjct: 23 NDEVAALFREYADLISITGGDAFRARVYEKAARAIGGHHTDVSTLDAKGLKEIPGVGKSI 82
Query: 267 QDHIQEIVTTGKLSKLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D + E + +G ++ +E E VR ++ + +GP A LYE+ G ++D+L
Sbjct: 83 ADKVVEYLDSGSVAAVEELRARIPEGVRRLT---AIPSLGPRKALMLYEELGISSVDELA 139
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME--RLLQKAG------------EEVLPEV 369
+ H +RL D+K PR E + LL+ +G EEV+ +
Sbjct: 140 DA---IHEERL-----RDLKGFGPRTEENLLHGIDLLRSSGGRVHIDVAAELAEEVVAAL 191
Query: 370 IILCG-------GSYRRGKASCGDLDVVI 391
+ G GS RRG+ + GD+DV++
Sbjct: 192 SEVSGVQRCAYAGSLRRGRETIGDIDVLV 220
>gi|54304023|emb|CAH59754.1| DNA polymerase lambda [Homo sapiens]
Length = 167
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 1 VQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 38
>gi|448730477|ref|ZP_21712785.1| PHP domain protein [Halococcus saccharolyticus DSM 5350]
gi|445793645|gb|EMA44217.1| PHP domain protein [Halococcus saccharolyticus DSM 5350]
Length = 599
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N + + F + + A G + + SY +A + P +ES D V+ + G+G+
Sbjct: 4 NDELADRFEEFADRLEATGVEYKPQSYRRAAENVRAYPESVESLVADGGDGVEAIEGVGE 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG + +LE + V +L V G+GP T LY++ G LDDL+
Sbjct: 64 ALAAKIVEYVETGAIEELEELRTELPVDMATLT-SVEGVGPKTVGTLYDELGVEDLDDLE 122
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEV-------I 370
E+ + G ++I I LL A GE ++ V +
Sbjct: 123 TVAREEKIREISGFGATSEENILAGIEFARQANERSLLGDARPLGEALMEYVAGGADGAV 182
Query: 371 ILC--GGSYRRGKASCGDLDVVIMHPD 395
C GGS RR + + GD+D+++ D
Sbjct: 183 ERCELGGSLRRWRETIGDVDLLVASDD 209
>gi|291296714|ref|YP_003508112.1| PHP domain-containing protein [Meiothermus ruber DSM 1279]
gi|290471673|gb|ADD29092.1| PHP domain protein [Meiothermus ruber DSM 1279]
Length = 536
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+A KG+PG+G ++ + EIV T + L E + LF V G+GP + L
Sbjct: 48 AARGFKGVPGVGPALAPLLTEIVQTQEFPYLAELEGRVPPGVLELF-RVQGLGPKRIRAL 106
Query: 312 YEKGHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
+E G +L++L K+E SL + R L + + +
Sbjct: 107 WENGVNSLEELVRWAEQGKIRTLPGFGAKSEASLLEAARYALSSMRRVLLPVGLEAARLL 166
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
L+ AG + GS RRG + G+LD+V++
Sbjct: 167 LADLENAGLKA------ELAGSVRRGLETVGNLDLVVV 198
>gi|339484269|ref|YP_004696055.1| PHP domain-containing protein [Nitrosomonas sp. Is79A3]
gi|338806414|gb|AEJ02656.1| PHP domain protein [Nitrosomonas sp. Is79A3]
Length = 577
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 30/208 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVI----EKLPFKIESADQVKGLPG 261
P N +I +F ++ ++ G + R +Y A V+ +++ +E + + LPG
Sbjct: 2 PKHNADIAAVFEEIADLLEIQGANPFRIRAYRNAARVVGEFSQEVSRLLEKGEDLTELPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY--------E 313
IG + I+EIV +G S L+ E I+ ++ G+GP + LY E
Sbjct: 62 IGDDLAGKIKEIVGSGHCSLLDRLHT-ELPSAITELLKIPGLGPKRVKALYHDLDVQTLE 120
Query: 314 KGHRTLDD----------LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
+ +R D K E+++ + + K I E +E+ L
Sbjct: 121 QLYRAARDGRIRALPGFGEKTENNILQAIEVHANQTRRFKLAIAAQYAEALEKFLV---- 176
Query: 364 EVLPEVI-ILCGGSYRRGKASCGDLDVV 390
+P V+ + GSYRR + + GDLD++
Sbjct: 177 -AIPGVLKVTVAGSYRRMRETVGDLDIL 203
>gi|406909441|gb|EKD49692.1| hypothetical protein ACD_63C00070G0010 [uncultured bacterium]
Length = 580
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKG------LPGI 262
N + ++IF ++ I G + S Y+ A IE + +E + KG L GI
Sbjct: 3 NSDFSKIFSEISRILELRGTNNFKVSAYRNAGREIEHMAEDLEDIYKEKGVNGLVNLTGI 62
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLY-EKGHRTLD 320
G+S+ + I+E++ TGK E+ +K K+ + L V GIG TA+KLY E R+L
Sbjct: 63 GESIAEKIEELIKTGKCKYYENLKK--KIPKVELEMLNVPGIGAKTARKLYKELNLRSLS 120
Query: 321 DLKNEDSLTHSQRL-GLKYFDD---IKTRIPRHEVEQMERLLQKAGEEVLPEVI------ 370
DL+ + + L G + + +++ E +++ R L E + +V+
Sbjct: 121 DLEEKAKAGKVRELEGFRARTEENILQSLKSLRERKKITRYLLTFAEPIAQDVLKYLKKC 180
Query: 371 -----ILCGGSYRRGKASCGDLDVVI 391
GS RR K + GD+D+++
Sbjct: 181 KDVKKCDVVGSLRRMKETVGDIDLIV 206
>gi|409099666|ref|ZP_11219690.1| PHP domain-containing protein [Pedobacter agri PB92]
Length = 560
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 235 SYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
+Y+K ++KLPF ++ D++ + GIGKS+ I E++ TG+L +L +
Sbjct: 33 AYFK----VDKLPFALKDKPVDEIDQVDGIGKSLAAKIIELLETGELQELNTILQQTPEG 88
Query: 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKT---- 344
+ + G + GIGP ++ G T+ +L NE+ L ++ GLK ++IK
Sbjct: 89 VVEMLG-IKGIGPKKILIIWRTLGIETIGELYYACNENRLIEAKGFGLKTQEEIKNAIEF 147
Query: 345 ------RIPRHEVEQMERLLQKAGEEVLPEV----IILCGGSYRRGKASCGDLDVVI 391
R +VE + LQ E L V ++ G +RR +L+ VI
Sbjct: 148 KLAANGRFLFAQVEAFAKNLQAQISEWLINVDNHSLLGVAGQFRRSCEIIDELEFVI 204
>gi|448709366|ref|ZP_21701183.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
gi|445792296|gb|EMA42906.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
Length = 583
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES--AD----QVKGLPGIG 263
N I F + ++ A G + + +Y +A + P I AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADGVEYKPRAYRRAAENVRSHPTPIADYVADGDREAIEGIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGGIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQK--AGEEVLP-----EVII 371
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EVAAEAGEIQEVTGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 372 LC--GGSYRRGKASCGDLDVV 390
C GS RR + + GD+DV+
Sbjct: 183 RCEVAGSIRRWRETIGDVDVL 203
>gi|255514119|gb|EET90382.1| PHP domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 580
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 32/210 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFS------YYKAIPVIEKLP------FKIESADQVK 257
NK I +IF NI LG D S Y +A IE L + D +
Sbjct: 5 NKEIADIFN---NIAAMLGIDNSPSSKFEIRAYQRAALTIEGLQEDLGLIYGRGGIDALM 61
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 316
LPGIGK + I+E + TG++ K E K + + L ++ G+G LY++ G
Sbjct: 62 ELPGIGKGLAQKIEEYLKTGRIRKYEEMRKKYPIDFVEL-SKIEGLGAKKIGVLYKRLGV 120
Query: 317 RTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAG 362
+ ++ LK+ + L G+K + K R+ +V + E ++ K
Sbjct: 121 KDVETLKDALEKHKVRELAGFGAKSEEVLADGIKILESSKGRLLLGDVLPEAESIVSKLA 180
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
L E +++ GS RR + + GD+D++ +
Sbjct: 181 GSGLAEGVVIA-GSIRRMRETVGDIDILAL 209
>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
Length = 573
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 21/202 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA-----DQVKGLPGIG 263
N I F +L ++ G + R +Y A I LP I+ +++ LPGIG
Sbjct: 3 NSEIARQFEELADLLEIQGANPFRLRAYRNAARTISGLPDSIQDIVESDPRELQDLPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
K + + I IV T L +LE ++ + + ++ GIGP L+ E ++LDDL
Sbjct: 63 KDLAEKIVTIVETSTLPQLEELKEQIPADVVRML-DIPGIGPKKVAFLFSELSIQSLDDL 121
Query: 323 K--NEDSLTHSQR-----------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
K E+ + Q+ GL++ + R+ E + + ++
Sbjct: 122 KAAAENGVIAEQKGFGKKTEQIILEGLEHLNQAGNRVRLAEAKAQSDAIIHDLSKLDSVQ 181
Query: 370 IILCGGSYRRGKASCGDLDVVI 391
I GS RR K S GDLDV++
Sbjct: 182 QISEAGSCRRRKESVGDLDVLV 203
>gi|289523842|ref|ZP_06440696.1| cell division topological specificity factor MinE [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289502498|gb|EFD23662.1| cell division topological specificity factor MinE [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 615
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP------FKIESADQVKGLPGIGKSM 266
+ EIF ++ + GEDR + Y+ V E L + + ++K +PG+GK++
Sbjct: 37 VAEIFERIALLLEIKGEDRFKINAYRR--VAESLRNESRDIYALYREGKLKEIPGVGKAI 94
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+ I E++ +GKL E ++ + +SL+ E+ +GP + ++E G T ++L+
Sbjct: 95 EQKICELLESGKLEFYEKLTEEVPDKLLSLY-EIPEMGPKRIKAVWEMLGIETPEELERA 153
Query: 326 DSLTHSQRL-------------GLKYFDD--IKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+ L G+K F + + +R P E + +++ + +
Sbjct: 154 AREGKLKDLPGFGPKVERKILEGIKAFKEKRLSSRFPLGEAWKYLQVILDHMKNCEGIIA 213
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
I GS RR K + GDLD+++
Sbjct: 214 ICPAGSLRRMKETVGDLDILV 234
>gi|32471446|ref|NP_864439.1| DNA polymerase beta family protein [Rhodopirellula baltica SH 1]
gi|32443287|emb|CAD72118.1| DNA polymerase beta family [Rhodopirellula baltica SH 1]
Length = 589
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 55/228 (24%)
Query: 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+EQME GSYRRG+ + GDLD++ + DR+
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDRE 221
>gi|421614601|ref|ZP_16055654.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408494610|gb|EKJ99215.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 589
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 55/228 (24%)
Query: 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+EQME GSYRRG+ + GDLD++ + DR+
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDRE 221
>gi|429218273|ref|YP_007179917.1| DNA polymerase IV [Deinococcus peraridilitoris DSM 19664]
gi|429129136|gb|AFZ66151.1| DNA polymerase IV (family X) [Deinococcus peraridilitoris DSM
19664]
Length = 565
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 211 KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSMQ 267
K + + ++ LGED R ++ A E L PF+ +G+ GIG ++
Sbjct: 4 KQVVSVLKGTADVLELLGEDPFRVKAFAAAARSFEALEEPFEDVVERGFRGVRGIGATLG 63
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
++E +G+L E +SLF V G+GP Q L+ G +L++L+ ++
Sbjct: 64 AELREYAVSGQLPSFEAAAALVPPGVLSLF-RVRGLGPKKIQALWRSGVSSLEELR--EA 120
Query: 328 LTHSQRLGLKYFD-DIKTRIPRHEVEQMERLLQKAGEEVLPEVII----LC--------- 373
+ LK F +T I +E +E L+ G + L LC
Sbjct: 121 CLDGRVAALKGFGAKSQTAI----LENVEFALRAQGRQHLSTACTVAEQLCRSLSGFSPC 176
Query: 374 -GGSYRRGKASCGDLDVVI 391
GS RRG S GD+D+ +
Sbjct: 177 VAGSLRRGLESAGDVDLTV 195
>gi|15606601|ref|NP_213981.1| DNA polymerase beta family protein [Aquifex aeolicus VF5]
gi|2983818|gb|AAC07374.1| DNA polymerase beta family [Aquifex aeolicus VF5]
Length = 581
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 20/201 (9%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKS 265
N+ + +IF ++ +I LGE+ R +Y + +I +L +E A + L PGIG+S
Sbjct: 5 NQELAKIFERMADILEFLGENPYRIRTYRRVANLISELQEDVEKAFYTRKLHHMPGIGES 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
I+E + TG + K E + + L + G+GP T + YE+ G RT ++
Sbjct: 65 TLLKIEEFLKTGTIKKYEELRRMVPEDLLELL-DAPGVGPKTLKIAYEQLGIRTKEEFIE 123
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-I 370
++ G++ ++ K RI E M + + K E + +
Sbjct: 124 ALKKGKFNKIRGFGPVKALKILRGIELWEKSKERISLIEAYPMAQEVLKYMERIKDKYEN 183
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
I GS RR K + GD+D+++
Sbjct: 184 ISIAGSLRRMKETIGDIDILV 204
>gi|440713720|ref|ZP_20894317.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436441436|gb|ELP34663.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 577
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 55/225 (24%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL--PFKIESAD---QVKGLPGIG 263
N + +F +L + GE+ R +Y I L P ++D + LPGIG
Sbjct: 3 NSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
K++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L+DL
Sbjct: 63 KTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESLEDL 121
Query: 323 -----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH-----EVE 352
K E ++ S+R+ DD+ I +H +E
Sbjct: 122 AAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACDAIE 181
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
QME GSYRRG+ + GDLD++ + DR+
Sbjct: 182 QME-----------------WAGSYRRGRDTVGDLDLLAVASDRE 209
>gi|417301507|ref|ZP_12088659.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327542194|gb|EGF28686.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 589
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 55/228 (24%)
Query: 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+EQME GSYRRG+ + GDLD++ + DR+
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVATDRE 221
>gi|448419747|ref|ZP_21580591.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
gi|445674661|gb|ELZ27198.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
Length = 582
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 30/188 (15%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N YR E+ R+ A PV E E + V + G+G+++ + E TG++++
Sbjct: 28 NTYRRAAENIRAH----ARPVEE---LAAEGQEAVGEIQGVGEAISSKVVEYFETGEIAE 80
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLK 337
LE + V +L V G+GP T LYE G TLD+L+ E + + G K
Sbjct: 81 LEELRAELPVDMAALTS-VEGVGPKTVASLYEALGITTLDELEAAAEEGRIREVKGFGPK 139
Query: 338 YFDDIKTRIP-RHEVEQMERL-------------LQKAGEEVLPEVIILCGGSYRRGKAS 383
++I+ +P ++ ERL L+ G +V GS RR + +
Sbjct: 140 TEENIRENVPFARRAQERERLGDARPLADDALAYLRADGAVERADV----AGSIRRWRDT 195
Query: 384 CGDLDVVI 391
GD+DV++
Sbjct: 196 IGDVDVLV 203
>gi|440638319|gb|ELR08238.1| hypothetical protein GMDG_03040 [Geomyces destructans 20631-21]
Length = 1765
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Query: 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSV 85
LV GV R +I Q + GA + K+S+KVTH++ Q+V +Q + +
Sbjct: 555 LVPLGVDVLRSEIAIQSM-SFGAQIHTKISRKVTHLVVAANRTRTQKV-RQATSYPHIKI 612
Query: 86 IRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKS 145
+ QWL DS+ E+V E Y I + E ++ + S + ++ G H
Sbjct: 613 VNQQWLVDSMSRWERVDETPYLINIHCEDKSTQPELFSNGRSLDDSDDSGAEGHSSHDAD 672
Query: 146 STEDVEHFQAESKG--DVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
+D E Q+ +G DV+ + + M+S S +++ S AS + D S
Sbjct: 673 MPDDFEGGQSPIEGLKDVDWSGVDAELEEFMASGSESDSESVASNTSDRS 722
>gi|222054249|ref|YP_002536611.1| PHP domain-containing protein [Geobacter daltonii FRC-32]
gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter daltonii FRC-32]
Length = 579
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 41/215 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 266
N I IF ++ +I G D +Y +A +E L I+ S ++ +PGIGK
Sbjct: 3 NHEIARIFSEIADIQEFRGYDIFKIRAYRRAALNLEGLSQAIDNLSHKELLKIPGIGKDF 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+E + TGK+ E +++ + + L + G+GPA A+ LY+K G + +DDL+
Sbjct: 63 AAKIEEYLATGKIEAHEKLKEEVPLGMLELL-VIPGLGPAKAKLLYDKLGVKGMDDLERA 121
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ-----KAGEEVLPEVIIL-------- 372
+ RL IP+ + + E +L+ K G E P +L
Sbjct: 122 AA---EHRLA--------GAIPKIQSKTEENILKGIEMVKRGRERFPLGRVLPLADSLVD 170
Query: 373 ------C------GGSYRRGKASCGDLDVVIMHPD 395
C GS RR K + D+D+V D
Sbjct: 171 SLRKQGCVERIELAGSIRRWKETVKDIDIVATASD 205
>gi|332667306|ref|YP_004450094.1| PHP domain-containing protein [Haliscomenobacter hydrossis DSM
1100]
gi|332336120|gb|AEE53221.1| PHP domain protein [Haliscomenobacter hydrossis DSM 1100]
Length = 554
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL--PFKIESADQVKGLPGIGKSM 266
NK I + F L +I GE+ SY A + KL P A ++ + G+G+++
Sbjct: 3 NKEIAKTFQFLGDIMELYGENPFKIRSYQNAYLTLRKLDRPLAEMEATEIAAIKGVGQAI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 322
+ I+E++ TGK+S L+ + D+ + + G GP + ++E+ G T+ +L
Sbjct: 63 AEKIRELLDTGKMSTLQQY-LDKTPDGVQEMLRIKGFGPKKIKVIWEEMGIETIGELLYA 121
Query: 323 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVE---QMERLLQKAGEEVLPEV 369
NE+ L + G L+YF +K+R H + + +LQK + LP V
Sbjct: 122 VNENRLLELKGFGEKTQNELRQQLQYF--LKSRNQFHFASLEAEGQDILQKL-QTALPGV 178
Query: 370 IILCGGSYRRGKASCGDLDVVI 391
+ G++RR +D+++
Sbjct: 179 KVEFTGAFRRHANILESIDILV 200
>gi|257053513|ref|YP_003131346.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
gi|256692276|gb|ACV12613.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
Length = 580
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 235 SYYKAIPVIEKLPFKI-----ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+Y +A + + P + + + V+ + +G+++ D + E V TG + +LE +
Sbjct: 29 AYRRAAENVAEYPGDVVDLAEDGVEAVQEIDRVGEAIADKLVEYVETGAIEELEDLRAEL 88
Query: 290 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTR 345
V +L V G+GP T LYE G +TLDDL+ Q + G K +I
Sbjct: 89 PVEMDALT-SVEGVGPKTVGTLYEALGIQTLDDLEAAAEAGEIQNVSGFGAKTEQNILDG 147
Query: 346 IPRHEVEQMERLLQKA---GEEV-----LPEVIILC--GGSYRRGKASCGDLDVVI 391
I +LL +A GE V E + C GGS RR K + GD+D ++
Sbjct: 148 IDFAREAHERQLLGEARPRGERVREYLRAVEAVQQCELGGSLRRWKPTIGDVDALV 203
>gi|229918289|ref|YP_002886935.1| hypothetical protein EAT1b_2572 [Exiguobacterium sp. AT1b]
gi|229469718|gb|ACQ71490.1| PHP domain protein [Exiguobacterium sp. AT1b]
Length = 564
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ KA +E ++E D + + GIGK ++E TG+ LE +++ +
Sbjct: 29 AFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQEEIPFGLM 88
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDSLTHS-QRLGLKYFD-------DIKT 344
L ++ G+G KL E G L+ L ED S G K + ++++
Sbjct: 89 KLL-KIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKLLAAAKNLES 147
Query: 345 RIPRHEVEQMERLLQKAGEEVLPEVIIL---CGGSYRRGKASCGDLDVVI 391
R R M ++++ E + E ++L GGS+RR + +C DLD +I
Sbjct: 148 RPERLAYAVMRPIVEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFII 197
>gi|397779792|ref|YP_006544265.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938294|emb|CCJ35549.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 577
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N + + ++ ++ G + +Y +A IE LP I ++ +PG+GK +
Sbjct: 9 NIEVAAVLYEVADLLEIKGVRFKPHAYRRAAQAIETLPEDIADVAREGRLGEIPGVGKGI 68
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNE 325
+ E+V TG L LE ++E + + GIGP A L E G RT+DDL+
Sbjct: 69 AGKVMEVVETGSLGYLESL-REELPEGVQELTRIEGIGPKKALVLSRELGIRTIDDLEAA 127
Query: 326 DSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEE-----VLPEVIIL----- 372
+ + L G K +I I QM R+ AG+ +LP ++
Sbjct: 128 ATAGRIRDLPGFGEKTEQNILAGI------QMSRM---AGKRHLLGYILPTARVIERRLS 178
Query: 373 ---------CGGSYRRGKASCGDLDVV 390
GS RR K + GDLD++
Sbjct: 179 SLGSVGQVSLAGSIRRRKETIGDLDLL 205
>gi|433591283|ref|YP_007280779.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|448333040|ref|ZP_21522258.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
gi|433306063|gb|AGB31875.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|445624394|gb|ELY77778.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
Length = 583
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 41/216 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVADGDREVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG++ +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 366
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPD 395
E + C GS RR + + GD+DV+ D
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATED 208
>gi|448377467|ref|ZP_21560163.1| PHP domain protein [Halovivax asiaticus JCM 14624]
gi|445655411|gb|ELZ08256.1| PHP domain protein [Halovivax asiaticus JCM 14624]
Length = 591
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 29/205 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILAHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + V IS V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DISDLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+ Q + L+ D +T RH V + L ++VL + +
Sbjct: 123 ETAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLGYLEGI 178
Query: 373 CG-------GSYRRGKASCGDLDVV 390
G GS RR + + GD+DV+
Sbjct: 179 AGVERCEVAGSIRRWRETIGDVDVL 203
>gi|320161955|ref|YP_004175180.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
gi|319995809|dbj|BAJ64580.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
Length = 581
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKL---PFKIESADQVKGLPGIG 263
N + ++F ++ N+ + +D F +Y +A + L + ++ +PGIG
Sbjct: 9 NTELADVFERIANLMKI--QDEMVFKIRAYERAAESLRALGEDASVLAQRGELTQVPGIG 66
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT----L 319
K++ + I+E++TTGKL LE E++ + L + G+GP A ++ H T L
Sbjct: 67 KAIAEKIEELLTTGKLGFLERLEQEVPPTLLDLL-RIPGVGPRKAALFWKTLHITTLVEL 125
Query: 320 DDLKNEDSLTHSQRLGLK----YFDDIKTRIPRHEVEQMERLL------------QKAGE 363
+ E L +G K D I R + + R Q E
Sbjct: 126 EKAAREGRLRSLPGMGEKSEKAILDGIAALAERSQRMTLVRAWSLAHRWLEWLRAQPGVE 185
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
P GS RR K + GDLD+VI D
Sbjct: 186 RAEP------AGSLRRWKDTVGDLDLVIATRD 211
>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
Length = 586
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S ++K + G+G S I+E++ TG + KLE + L + G+GP T +L
Sbjct: 58 SVRELKAIDGVGASTAAKIRELLDTGAIDKLEKLRAKYPPAFVEL-SRIPGLGPKTLMRL 116
Query: 312 Y-EKGHRTLDDL-----------------KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVE 352
E ++DDL K+ED+L + +RLG+ D R P +
Sbjct: 117 RGELDVHSVDDLRKALEAKKLRTLSGFGAKSEDNLRRAIERLGMSGKD---RRTPIADAL 173
Query: 353 QMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMHPD 395
+ + + A E LPEV + C GS RR + + GD+D+V+ D
Sbjct: 174 PIAQRI-TAALEALPEVERVSYC-GSLRRFRETIGDIDIVVAAGD 216
>gi|366162711|ref|ZP_09462466.1| PHP domain-containing protein [Acetivibrio cellulolyticus CD2]
Length = 569
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 232 RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+S +YY A IE L +E+ D++K + GIG ++ I E+VTTGKL E+ +K
Sbjct: 26 KSKAYYDASRTIELLDEDLEALILNDRLKEIKGIGNALTQKITELVTTGKLEYYENLKKS 85
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
+ + ++ G GP +Y++ G T+ +LK + ++ + L F + +
Sbjct: 86 IPHGLVEML-KIPGFGPKKVAAVYKQLGITTIGELKY--ACEENRLIKLAGFGE---KTQ 139
Query: 348 RHEVEQMERLLQKAGEEVLP-----------------EVIILC-GGSYRRGKASCGDLDV 389
+ +E +E L + + + P +VI +C GGS RR K + D+D+
Sbjct: 140 KKILEGIENLNKYSNQFYYPFAKTLADMIIATLKESGQVIRVCEGGSLRRKKETVKDIDI 199
Query: 390 V 390
+
Sbjct: 200 L 200
>gi|268323588|emb|CBH37176.1| conserved hypothetical protein, containing PHP domain [uncultured
archaeon]
Length = 577
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 26/207 (12%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE------SADQVKGLPG 261
+N ++ IF ++ +I+ GE+ +Y +A IE L ++ ++K +PG
Sbjct: 2 INLDMARIFDEIADIFEVKGENPFKIRAYRRAARTIESLTQDLKVIAERGGVSELKKIPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLY-EKGHRTL 319
+G+ + I EI TG K H E ++V + L + +GP T K++ E G ++
Sbjct: 62 VGEGIAKKILEIAETGDCKK--HIELKQEVPSGVLELLAIPRVGPKTIAKVHDELGICSI 119
Query: 320 DDLKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI-- 370
DL+ E + +H + LG K ++I I ++ + LL +A E ++ E+
Sbjct: 120 ADLE-EAARSHKLKKLPGLGAKVEENILKGIAQYRSYKGRVLLSEALPRAESIVTELKKL 178
Query: 371 -----ILCGGSYRRGKASCGDLDVVIM 392
I GS RR + + GD+D++++
Sbjct: 179 DAVAKITIAGSLRRMRETIGDIDILVV 205
>gi|336323485|ref|YP_004603452.1| PHP domain-containing protein [Flexistipes sinusarabici DSM 4947]
gi|336107066|gb|AEI14884.1| PHP domain protein [Flexistipes sinusarabici DSM 4947]
Length = 569
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 20/202 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 264
N +I EI + ED R +Y A + L F I +S +++ + G+GK
Sbjct: 3 NASIAEILEEYAKYLEINNEDFFRVRAYNSAARSVLGLDFNIAEILKSGEELPKIKGVGK 62
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
++Q HI+EIV +G +LE K + + + ++ G+G A K++ E G +L +L+
Sbjct: 63 NIQGHIEEIVNSGTFHELEEI-KSNTPQILIVMNKIPGVGAKKAFKIHKELGVNSLGELE 121
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-----LPEVIILC-- 373
E+ L G K + I I ++ RLL A E E I
Sbjct: 122 YACIENRLAMLDGFGEKSQNKILKNIEYVKLSMQRRLLADAEETAEKIHSFFESIDYVEK 181
Query: 374 ---GGSYRRGKASCGDLDVVIM 392
GSYRR + DLD+VI+
Sbjct: 182 YEIAGSYRRKLETVKDLDLVIV 203
>gi|383621730|ref|ZP_09948136.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|448702579|ref|ZP_21700012.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|445777140|gb|EMA28110.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
Length = 583
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N I F + ++ A + + +Y +A + P I D ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAEGDRDAIEDIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + I+ V G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIDELEELRAELPI-DIADITRVEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM----ERLLQKAGEEVLPEVIIL------ 372
E++ + + +K F + R +E +R L G + +V+
Sbjct: 123 --EEAAENGEIQEVKGFGPKTEQNIRDNLEFARQVGQRYLLGEGRPLADDVLAFLESLEE 180
Query: 373 ---C--GGSYRRGKASCGDLDVV 390
C GS RR + + GD+DV+
Sbjct: 181 VDRCEVAGSIRRWRETIGDVDVL 203
>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
acetivorans C2A]
gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
C2A]
Length = 588
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ I E+ + +I + + +Y +A IE L IE + KG +PGIG
Sbjct: 3 NREIAELLYETADIMEFQQIEWKPRAYRRAAQNIENLGEDIEKVYEKKGKKGLTEIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
+++ DHI E + TGK+ K E + T L E+ G+G ++L E +T+ DL
Sbjct: 63 EAIADHIAEYLETGKVKKFEDLKGKAPSGTTELM-EIRGLGAKKTKRLADELKVKTIPDL 121
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL---------- 366
K N + + G ++I + +E L K EE++
Sbjct: 122 KAAVNAHRIRRLEGFGEISEENIARSLRNYEKSHSRMALGKVLPLAEEIISALKTTLKTE 181
Query: 367 -----PEV---IILCGGSYRRGKASCGDLDVV 390
PE+ ++ GS RR K + GD+D++
Sbjct: 182 LGSKTPEIDFSKLIYTGSLRRLKETIGDIDIL 213
>gi|188586429|ref|YP_001917974.1| PHP domain-containing protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351116|gb|ACB85386.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 571
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-Y 312
++++ + GIGK + I+EIV TG+ S LE + + G + G+G +AQKL Y
Sbjct: 51 NRLRQISGIGKGIASQIEEIVRTGRSSLLEELRSEVPTGLRRILG-IPGVGVKSAQKLYY 109
Query: 313 EKGHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ---------K 360
+ G +L+ LK +D + G K + I I + E + E LL
Sbjct: 110 QLGISSLNQLKEACEQDQIKELPGFGEKIQEKILQGISKVESSERETLLGIALPMNENII 169
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVI 391
A E PE+ + GS RR K D+D+V+
Sbjct: 170 ATLEKFPEIENVETSGSVRRRKGMVQDIDLVV 201
>gi|429192003|ref|YP_007177681.1| DNA polymerase IV [Natronobacterium gregoryi SP2]
gi|448324754|ref|ZP_21514166.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
gi|429136221|gb|AFZ73232.1| DNA polymerase IV (family X) [Natronobacterium gregoryi SP2]
gi|445617717|gb|ELY71310.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
Length = 583
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQ---VKGLPGIG 263
N I F + ++ A + + +Y +A + P I +AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAADDREAIEGIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGAIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQK--AGEEVLP-----EVII 371
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EAAAEAGEIQAVKGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 372 LC--GGSYRRGKASCGDLDVV 390
C GS RR + + GD+DV+
Sbjct: 183 RCEVAGSIRRWRETIGDVDVL 203
>gi|448561173|ref|ZP_21634525.1| DNA polymerase X [Haloferax prahovense DSM 18310]
gi|445721405|gb|ELZ73073.1| DNA polymerase X [Haloferax prahovense DSM 18310]
Length = 582
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 22/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELEELRADLPVDMAGLT-SVEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL KA V +++ G
Sbjct: 123 AAARDGKIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLAYLGGHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESAD 207
>gi|938235|emb|CAA48603.1| DNA polymerase beta [Homo sapiens]
Length = 54
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 345 RIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
RIPR E+ QM+ ++ ++V E I GS+RRG S GD+DV++ HP
Sbjct: 1 RIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHP 50
>gi|297172010|gb|ADI22994.1| DNA polymerase IV (family X) [uncultured Planctomycetales bacterium
HF0500_40D21]
gi|297183360|gb|ADI19495.1| DNA polymerase IV (family x) [uncultured Planctomycetales bacterium
HF0500_40D21]
Length = 583
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 31/154 (20%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
LPGIGK + + I IV TG+L++LE + +++ + G+GP L++ G
Sbjct: 58 LPGIGKDLAEKITSIVETGRLAQLEELREQVPAEVVAML-RIPGLGPKKVGVLFQDLGIE 116
Query: 318 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP--RHE----------------VEQMER 356
+LD L+ +E + + G K I IP RH VE ++R
Sbjct: 117 SLDALEAAASEGVIAERKGFGAKTEQSILEGIPIARHGSTRTWLATARVAVDRIVEDLDR 176
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
L E + V + GS RR K + GDLDV+
Sbjct: 177 L------ESVTRVSL--AGSSRRLKETVGDLDVL 202
>gi|448313810|ref|ZP_21503522.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
gi|445597120|gb|ELY51198.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
Length = 583
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N I F + ++ A + + +Y +A I+ P +IE D+ + + G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENIQAHPVPIADRIEDGDEEILDEIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ + E V TG + +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKVVEYVETGSIEELEELRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ + Q + G K ++I+ I +LL +A ++VL E +
Sbjct: 123 EAAAEASEIQAVKGFGPKTEENIRDGIEFAREVGQRQLLGEARPLADDVLAFLEGLEAVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVI 391
C GS RR +A+ GD+D ++
Sbjct: 183 RCEVAGSIRRWRATIGDVDALV 204
>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
Length = 578
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 35/164 (21%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EK 314
+K + GIG + I +V TGKL+ L+ ++L + G+GP A LY E
Sbjct: 55 LKEIEGIGDDLAAKIIAMVETGKLAMLDELRSQVPESVLALL-RIPGVGPKKAAALYKEL 113
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM------------ERLLQKAG 362
G ++L++LK+ + + LK F + EQ+ ER+L
Sbjct: 114 GVKSLEELKS--ACEQGKVRELKGF--------AAKTEQLILQGLTIAAAGNERMLWYDA 163
Query: 363 EEVLPEVI-----------ILCGGSYRRGKASCGDLDVVIMHPD 395
++V+ ++ + GSYRRGK S GDLD++++ D
Sbjct: 164 DKVVQALLAHMRPCQAIDKLEVAGSYRRGKDSIGDLDLLVISRD 207
>gi|409728504|ref|ZP_11271360.1| PHP domain-containing protein [Halococcus hamelinensis 100A6]
gi|448722865|ref|ZP_21705393.1| PHP domain-containing protein [Halococcus hamelinensis 100A6]
gi|445788532|gb|EMA39241.1| PHP domain-containing protein [Halococcus hamelinensis 100A6]
Length = 595
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 20/205 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N + + F + + A G + + SY +A I P IES D V+G+ G+G
Sbjct: 4 NDEVADRFEEFADRLEATGVEYKPQSYRRAAENIRAHPGAIESLAAEGQDAVEGIEGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG++ +LE + V +L V G+GP T LY++ G LDDL+
Sbjct: 64 ALSSKVVEYVETGEIEELEELRAELPVDMAALT-RVEGVGPKTVGTLYDELGVEDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEE-----VLPEVIIL 372
+ + + G K +++ + I LL A GE+ V E +
Sbjct: 123 AAAEAERIREVKGFGAKTEENVLSGIEFARQASQRSLLGDARPVGEDLRRYIVGSEAVAE 182
Query: 373 C--GGSYRRGKASCGDLDVVIMHPD 395
C GS RR + + GD+D+++ D
Sbjct: 183 CELAGSLRRWRETIGDVDLLVASED 207
>gi|357419195|ref|YP_004932187.1| PHP domain-containing protein [Thermovirga lienii DSM 17291]
gi|355396661|gb|AER66090.1| PHP domain protein [Thermovirga lienii DSM 17291]
Length = 581
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 31/193 (16%)
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
+N YR E+ RS + V + F +E GIGK++ + I E+VT G+L
Sbjct: 31 VNAYRRAAENIRSLGRDLSSMVQDGSIFAVE---------GIGKAIGEKITELVTKGRL- 80
Query: 281 KLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEKGHRT----LDDLKNEDSLTHSQRL 334
E++EK E R++ E+ +GP + ++EK T L++ L
Sbjct: 81 --EYYEKLSQEVPRSLLEILEIPDMGPKRVKAVWEKLKVTTIEELEEAAKSGRLAELPGF 138
Query: 335 GLKYFDDIKT------------RIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
G K I RIP + ++ K G LP + I GGS+RR K
Sbjct: 139 GPKSVARILAGIEERKRALETHRIPLVSAWILAEMV-KEGLLGLPGLRIEVGGSFRRKKE 197
Query: 383 SCGDLDVVIMHPD 395
+ GDLD ++ D
Sbjct: 198 TVGDLDFLVSSHD 210
>gi|401401713|ref|XP_003881077.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325115489|emb|CBZ51044.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 1124
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 74/194 (38%), Gaps = 68/194 (35%)
Query: 268 DHIQEIVTTGKLSKLE------HFEKDEKVRTISLFGEVWGIGPATA------QKLYEKG 315
DH+ + TG+ + H + E +T++ G W GPA A ++ E
Sbjct: 555 DHVDTYLLTGETGRGRGTPRGVHTPRPEVQKTVASPGARWVHGPARAGVRFASRRATEGE 614
Query: 316 HRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQM------ERLLQKAGEEVLP 367
+NE + LT Q GLKY + + RIPR EV + E L+KA EE P
Sbjct: 615 DAVAAKRQNEAARLLTRPQLTGLKYVEAFQKRIPREEVAAVADFIRSELGLEKANEE-RP 673
Query: 368 EVII----------------------------------------------LCGGSYRRGK 381
+ + +C GSYRRGK
Sbjct: 674 SIRLRKRAKREQRDEGTKGDRGDAQESAKDERRIEGASVESWTDGLLMLDVC-GSYRRGK 732
Query: 382 ASCGDLDVVIMHPD 395
A CGD+D++++ D
Sbjct: 733 AECGDIDILLIRRD 746
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
PGIG S+ I E+V+TG +L+ E+ +VWG+G TA+KL G ++
Sbjct: 435 PGIGSSIFQTIDELVSTGTTRRLQVLLHGERAAAREELQKVWGVGFHTAEKLIALGVHSV 494
Query: 320 DDLK 323
L+
Sbjct: 495 AALR 498
>gi|313678923|ref|YP_004056662.1| php domain protein [Oceanithermus profundus DSM 14977]
gi|313151638|gb|ADR35489.1| PHP domain protein [Oceanithermus profundus DSM 14977]
Length = 535
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 27/200 (13%)
Query: 211 KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQ 267
K++ + + ++ LGE R +Y KA +E+ ++ A LPGIGK +
Sbjct: 4 KDLARMLAEAADLMEVLGETGFRVNAYRKAARALERYEGELPELMAAGFDRLPGIGKGLA 63
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----- 322
+ EIV TG+ LE LF V G+GP + L++ G +L++L
Sbjct: 64 GALAEIVETGEFGYLEELRGQVPPGVAELF-MVQGLGPKRIRALWQAGIDSLEELVRAAE 122
Query: 323 ------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
K + +L + R L + + + L+ AG +
Sbjct: 123 EGRVAAMPGFGKKTQQALAEAARFALANLRRVHLPVGLEAARLLLADLEAAG------IH 176
Query: 371 ILCGGSYRRGKASCGDLDVV 390
GS RR + G++D+V
Sbjct: 177 AALAGSLRRRLETAGNVDLV 196
>gi|325193317|emb|CCA27660.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 175
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ + EIFG+L GE + +Y KA I I S Q + L GIGKS
Sbjct: 95 NQALAEIFGELAGFEFKRGERFKGGTYSKAAKAIRDADEVISSGKQAQKLKGIGKSTGAK 154
Query: 270 IQEIVTTGKLSKLEHF 285
I E + TG LS +E +
Sbjct: 155 IDEFLETGTLSVIEEY 170
>gi|448666862|ref|ZP_21685507.1| DNA polymerase IV [Haloarcula amylolytica JCM 13557]
gi|445771993|gb|EMA23049.1| DNA polymerase IV [Haloarcula amylolytica JCM 13557]
Length = 578
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 24/207 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I + + ++ A G + + +Y +A I P IE D V + G+G
Sbjct: 4 NDEIATLLEEFADLLDAKGVEYKPRAYRRAAENIRDFPGAIEGLATEGEDSVGEIDGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG++ +L + V +L V G+GP + LYE G TLD+L+
Sbjct: 64 AISSKVVEYVNTGEIEELTELRAELPVEMDALTA-VEGVGPKSVGSLYEALGITTLDELE 122
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQK------------AGEEVLPE 368
Q + G K +I + LL + AG + + E
Sbjct: 123 AAAEAGEIQEVSGFGAKTEQNILDNLDFAREAHERSLLGEARPYGDRIRSFMAGGDAVAE 182
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPD 395
+ GGS RR + + GD+DV++ D
Sbjct: 183 CAL--GGSIRRWRPTIGDVDVLVGSTD 207
>gi|256421087|ref|YP_003121740.1| PHP domain-containing protein [Chitinophaga pinensis DSM 2588]
gi|256035995|gb|ACU59539.1| PHP domain protein [Chitinophaga pinensis DSM 2588]
Length = 557
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 235 SYYKAIPVIEKLPFKIESA--DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
S+ A +EKLP +++ +++ + GIG S+ IQE++ TGK + LE +
Sbjct: 30 SFASAAFTVEKLPIQLQVTPPEEIAKIKGIGDSISKAIQEMLQTGKFAALEAYLLKTPPG 89
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIP- 347
+ + ++ G+GP ++ E +L +L NE+ LT + G K D +K I
Sbjct: 90 ILEMM-KIKGLGPKKIATIWKELEAESLGELLYACNENRLTLLKGFGQKTQDAVKQSIEF 148
Query: 348 ------RHEVEQMERL---LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+ Q E L L+K ++L + G +RR + +++ V P
Sbjct: 149 YFSNQGRYLYAQAEALALSLEKEFSQLLTPAAVSLTGQFRRNENIIDEIEFVAALP 204
>gi|334341003|ref|YP_004545983.1| PHP domain-containing protein [Desulfotomaculum ruminis DSM 2154]
gi|334092357|gb|AEG60697.1| PHP domain protein [Desulfotomaculum ruminis DSM 2154]
Length = 569
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 25/155 (16%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EK 314
V +PGIGK+++ I+EI+ TGKLSK + ++ + + ++ GIGP A+ L+ E
Sbjct: 53 VGKIPGIGKAIEAKIKEIIETGKLSKHQELLREIPPGVLEI-KKLPGIGPNRARILHREL 111
Query: 315 GHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
G LD+L K E + + + D + + R E++
Sbjct: 112 GVTGLDELAQAAKERRVRVLKGFSAKMEWEILNGIGMMRNRHDRVLLSVARELAEELTEF 171
Query: 358 LQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVI 391
++ +LP V + GS RR K + GDLD+VI
Sbjct: 172 IK-----ILPGVRQVAVAGSTRRWKETVGDLDLVI 201
>gi|443726232|gb|ELU13474.1| hypothetical protein CAPTEDRAFT_143306, partial [Capitella teleta]
Length = 102
Score = 46.2 bits (108), Expect = 0.027, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA I K P KI S + K L G+G + I E + TGKL K+E ++ I
Sbjct: 18 AYRKAAGAIAKHPEKINSGKEAKKLEGVGDKIGKKIDEFIATGKLVKIEKIRANDTNMAI 77
Query: 295 SLFGEVWGIG 304
+ V GIG
Sbjct: 78 NALTRVTGIG 87
>gi|448572783|ref|ZP_21640544.1| DNA polymerase X [Haloferax lucentense DSM 14919]
gi|445719555|gb|ELZ71234.1| DNA polymerase X [Haloferax lucentense DSM 14919]
Length = 582
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQKIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESAD 207
>gi|442323557|ref|YP_007363578.1| DNA polymerase domain-containing protein [Myxococcus stipitatus DSM
14675]
gi|441491199|gb|AGC47894.1| DNA polymerase domain-containing protein [Myxococcus stipitatus DSM
14675]
Length = 296
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 232 RSFSYYKAIPVIEKLPFKI------ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y KA I + P + + +KG PG+GKS+ + E+V TG+L LE
Sbjct: 31 RVTAYRKAAATIARWPESVAEVLASKGQAGLKGFPGVGKSIAAAVTELVRTGQLELLERL 90
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRL-------GLK 337
E++ L V GIGP A++++E+ G RTL++L+ H +R+ G +
Sbjct: 91 ERESSPE--QLLASVPGIGPELARRIHEELGVRTLEELEQAAHDGHLERVEGFGPRRGQQ 148
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL--CGGSYRRGKASCGDLDVV 390
D + R+ R R + + E PEV +L YRR KA+ G L +
Sbjct: 149 VRDLLAARLGR-----ARRGIVRKREGPRPEVGLLLQVDEEYRR-KAAAGALRTI 197
>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
gi|448292878|ref|ZP_21483199.1| DNA polymerase X [Haloferax volcanii DS2]
gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
gi|445571853|gb|ELY26396.1| DNA polymerase X [Haloferax volcanii DS2]
Length = 582
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTETNILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESAD 207
>gi|448385519|ref|ZP_21564025.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
gi|445657014|gb|ELZ09846.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
Length = 583
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 41/216 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVAAGDREVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG + +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISAKIVEYVETGGIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 366
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPD 395
E + C GS RR + + GD+DV+ D
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATED 208
>gi|292492014|ref|YP_003527453.1| PHP domain-containing protein [Nitrosococcus halophilus Nc4]
gi|291580609|gb|ADE15066.1| PHP domain protein [Nitrosococcus halophilus Nc4]
Length = 573
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 82/205 (40%), Gaps = 28/205 (13%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N I EIF L ++ G + R +Y + I S + LP IG
Sbjct: 5 NTEIAEIFNTLADLLEIEGANPFRVRAYRNGARTVGGFSQNIASLLKEGKDLTELPHIGS 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR-----TL 319
+ D I+ IV TG+L LE E+ RT ++ I P K HR +L
Sbjct: 65 DLADKIRTIVDTGRLPLLEEVEQ----RTPEALSKLMAI-PGLGAKRIAALHRELKVDSL 119
Query: 320 DDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL---- 372
+DLK + + L G K D IK I R + L +A V P + L
Sbjct: 120 EDLKRVIRMGKVRELEGFGKKTEDLIKAGIERIASSEKRFPLLQAESIVKPLLAYLETIA 179
Query: 373 ------CGGSYRRGKASCGDLDVVI 391
GSYRR K + GDLD+++
Sbjct: 180 GIKDIEVAGSYRRRKETVGDLDILV 204
>gi|406834591|ref|ZP_11094185.1| DNA-directed DNA polymerase [Schlesneria paludicola DSM 18645]
Length = 572
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 23/207 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG-----LPGIG 263
N++I +F ++ ++ G + R +Y +E L + G L GIG
Sbjct: 3 NQHIAALFNEVADLLEIQGANSFRVRAYRNGARTLENLSQSVAELVAAPGGGLETLDGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
K + I ++ TG+L +LE + + + + G+GP L+ E +L+ L
Sbjct: 63 KDLASKIAVVLQTGQLPQLEELRQQVPAGVVEML-RIPGLGPKKVAALFHELTITSLEQL 121
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI--------- 370
K + + G K I +P H +E +R L E++
Sbjct: 122 KIACEAGKVAELKGFGKKTEKSILEGLP-HALEAGKRFLISVARASADEIVADLKQLPTV 180
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS RR K +CGDLD++ D
Sbjct: 181 SQVSVAGSCRRRKETCGDLDILATADD 207
>gi|433639242|ref|YP_007285002.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
gi|433291046|gb|AGB16869.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
Length = 591
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILSHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + V I+ V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DIADLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--- 369
+ Q + L+ D +T RH V + L ++VL +
Sbjct: 123 EAAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLAYLEGI 178
Query: 370 --IILC--GGSYRRGKASCGDLDVVIMHPD 395
+ C GS RR + + GD+DV+ D
Sbjct: 179 ADVERCEVAGSIRRWRETIGDVDVLAATDD 208
>gi|317121677|ref|YP_004101680.1| PHP domain-containing protein [Thermaerobacter marianensis DSM
12885]
gi|315591657|gb|ADU50953.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
Length = 675
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLP 260
PP NK + + ++ ++ G D R++ +Y +A + L + D+++ LP
Sbjct: 19 GPPMTNKRVAALLEEIADLLEIDGTDARKAGAYRRAARTVSALRDDLRDYLEGDRLQTLP 78
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTL 319
GIG ++ I++ TG L+ + +L + G+GP TA +LY E G +
Sbjct: 79 GIGPAIAGKIRDFYATGSTRLLDELRRRVPAGVQNLLA-IPGLGPRTAARLYHELGIDSP 137
Query: 320 DDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
L+ D+L + L + + R R +++++R
Sbjct: 138 AALR--DALDDGRVAALPGLGEARARKLREALDRLDR 172
>gi|448582195|ref|ZP_21645699.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
gi|445731843|gb|ELZ83426.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
Length = 583
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 22/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG + +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGSIEELEELRADLPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL KA V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLSYLGDHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESAD 207
>gi|269987017|gb|EEZ93292.1| PHP domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 568
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 23/203 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKSM 266
NK++ E + +I G +Y A I L KI ++ L G+GKS+
Sbjct: 4 NKDLAEKLNNIADILELEGVKWEPRAYRTAALTISSLSEDINKIYKEGKLLSLEGVGKSI 63
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK-- 323
+ I+E + GK+SK E ++ + F ++ G+GP LY+ G R + DLK
Sbjct: 64 ANSIEEYLQNGKISKYEKLKEKYPI-DFETFRKIRGLGPKRVYALYKALGIRDIKDLKEA 122
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL-------------QKAGEEVLPEV 369
+++ + G K ++I+ + + +RLL + V V
Sbjct: 123 LENHKISNIEGFGEKSEEEIRKNLQSFMTVKNDRLLLGYVIDYTNLILKKLRNSNVFERV 182
Query: 370 IILCGGSYRRGKASCGDLDVVIM 392
I GS RR K + GD+D++ +
Sbjct: 183 EI--AGSLRRRKETIGDVDILAI 203
>gi|269837329|ref|YP_003319557.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
20745]
gi|269786592|gb|ACZ38735.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
Length = 554
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ + E + ++ GE+ R +Y +A +E+ P +E+ +++ + GIG
Sbjct: 3 NREVAEQLRQFADLLEIKGENAFRVNAYRRAADAVEREPEPLEAIIAREELTAIEGIGPG 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
+ I EIV TG+ S E + ++L G + G+GP T +LY E G TL L+
Sbjct: 63 LAAAITEIVQTGRYSATEELLDEVPGTLLTLLG-IPGVGPKTVGRLYRELGITTLVQLE 120
>gi|386839206|ref|YP_006244264.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099507|gb|AEY88391.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792498|gb|AGF62547.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 575
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ ++ +Y KA I P + + AD ++ +P +G+S+ + + E + TG ++ +E
Sbjct: 24 GDAFKARAYEKAARAIGGYPVDVSTLDADGLREIPNVGRSIAEKVAEYLRTGTMAVVE-- 81
Query: 286 EKDEKVRT-ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344
E+ K+ + + +GP A +LYE H + + LK F +
Sbjct: 82 ERRAKIPAGVRELITIPTLGPKKALRLYEDLHISSVSELAAAIEADALAD-LKGFGEKTQ 140
Query: 345 RIPRHEVEQMERLLQKAG------------EEVLPEVIILCG-------GSYRRGKASCG 385
RH +E LLQ+AG EE+ E+ + G GS RR + + G
Sbjct: 141 ENIRHGIE----LLQRAGSRVPLALALDTAEEITAELSAVTGCERCAYAGSLRRMRETVG 196
Query: 386 DLDVVI 391
DLDV++
Sbjct: 197 DLDVLV 202
>gi|448597005|ref|ZP_21654143.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
gi|445740886|gb|ELZ92391.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
Length = 582
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQAVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESAD 207
>gi|297190382|ref|ZP_06907780.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197720406|gb|EDY64314.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 575
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 30/187 (16%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEH 284
GE ++ +Y KA + P + D KGL P +G+S+ D I E + TG++S +E
Sbjct: 24 GEAFKARAYEKAARAVGGFPTDVSKLD-AKGLREIPNVGRSVADKIVEYLRTGRMSVVEE 82
Query: 285 FEKD--EKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRL-GLKYFD 340
VR + + + G+GP A LYE+ ++D L + H +RL LK F
Sbjct: 83 ARASVPAGVRELIM---IPGLGPRKAMVLYEELEVASVDQLLDA---IHKERLRDLKGFG 136
Query: 341 DIKTRIPRHEVEQME-----RLLQKAGEEVLPEVI---------ILC--GGSYRRGKASC 384
+ H + ++ R+L A +V +++ + C GS RR K +
Sbjct: 137 ERTESNLLHGISVLQKAGEGRILVSAAMDVAEQLVAELSDIRGCVRCSYAGSLRRMKETI 196
Query: 385 GDLDVVI 391
GD+D+++
Sbjct: 197 GDVDILV 203
>gi|317051666|ref|YP_004112782.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
gi|316946750|gb|ADU66226.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
Length = 429
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 335
TG + LE ++ +K+ + GE+WGIGP T KL G T DL +D L+ +R
Sbjct: 165 TGGVVHLETQQRAQKLLQLMPVGEIWGIGPRTTAKLINMGMETAADLAGKDPLSMKKRFS 224
Query: 336 L 336
+
Sbjct: 225 V 225
>gi|291279404|ref|YP_003496239.1| DNA polymerase family X [Deferribacter desulfuricans SSM1]
gi|290754106|dbj|BAI80483.1| DNA polymerase, family X [Deferribacter desulfuricans SSM1]
Length = 568
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIG 263
N++I IF + + Y L D + +Y KA +I L F I ++ ++ + G+G
Sbjct: 3 NEHIASIFDEYAD-YLELNNDDPFKVVAYRKAARIIRGLDFDIVEYIQNGGNLEKIKGVG 61
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-- 321
K++ I EIV TG L LE K+E + + ++ G+GP A +L HR L+
Sbjct: 62 KAIAKKIIEIVNTGSLDSLEKL-KEETPKILIEMTKIPGLGPKKAYRL----HRELNINS 116
Query: 322 ---------------LKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
LK T L GL+Y+ K + EVE + ++ ++
Sbjct: 117 IGELEYACKENRIKLLKGFGGKTQDMILKGLEYYKKHKGKKLFFEVELIANDFKQTVSKI 176
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIM 392
+ GS RR K D+D++++
Sbjct: 177 DGVCDVEFAGSLRRKKEIVKDIDLILL 203
>gi|448399930|ref|ZP_21571148.1| PHP domain protein [Haloterrigena limicola JCM 13563]
gi|445668052|gb|ELZ20686.1| PHP domain protein [Haloterrigena limicola JCM 13563]
Length = 583
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A + P ++++ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENVRAYPSPIADRVDAGDREAVESIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + + + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIEELEELRAELPIDMADIT-RIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ Q + G K +I + +LL +A ++VL + +
Sbjct: 123 EAAAEAGEVQEVKGFGPKTEQNILDNLEFARTVGQRQLLGEARPLADDVLAFLESIDAVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPDRK 397
C GS RR +A+ GD+D ++ R+
Sbjct: 183 RCEVAGSIRRWRATIGDVDALVATDARE 210
>gi|307106980|gb|EFN55224.1| hypothetical protein CHLNCDRAFT_134478 [Chlorella variabilis]
Length = 666
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK-- 287
+ R+ Y +A + +K++ + LP +G I++I+ +G LE F +
Sbjct: 324 NHRALRYSRAASAVRACAYKLQPNLRGGQLPFVGDVTASQIKDILESGTCQALECFRRVA 383
Query: 288 -----DEKVR---------TISLFGEVWGIGPATAQKLYEKGHRTLDDLK---------- 323
D K R T +LF + G+G A++ ++ G R +D++
Sbjct: 384 DVAVTDSKGRRRRDSVGGATRALFHSLPGVGVQAAKRWWDLGCRCFEDVELAAEPGGPLG 443
Query: 324 --NEDSLTHSQRLGLKYFDD-IKTRIPRHEVEQMERLLQKAGEEVL-PEVII-LCGGSYR 378
LT QR L + D ++ IP EV +M +Q+ E V P + L GG R
Sbjct: 444 QGGAFPLTRDQRFSLGHRGDLLEVAIP-GEVREMLVAVQQGLEAVSHPGWRVELVGGGRR 502
Query: 379 RGKASCGDLDVVIMHP 394
A+ D D + HP
Sbjct: 503 --SAAAHDADFLATHP 516
>gi|227538017|ref|ZP_03968066.1| DNA polymerase beta [Sphingobacterium spiritivorum ATCC 33300]
gi|227242093|gb|EEI92108.1| DNA polymerase beta [Sphingobacterium spiritivorum ATCC 33300]
Length = 560
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESA--DQVKGLPGIGKSMQDHIQEIVTTGKL 279
N +RA SF I+KLPF +A + + GIGK + IQEI+ TG
Sbjct: 23 NPFRAKAMASASFK-------IDKLPFSAATATVEDLSAQQGIGKGTAEKIQEIIQTGSF 75
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK---NEDSLTHSQRLG 335
++L+ + + + ++ G+GP ++ E G ++ +L NE+ L ++ G
Sbjct: 76 TELDQLIANTPPGLLDML-QIKGLGPKKILIIWKELGIESVGELYYACNENRLVEAKGFG 134
Query: 336 LKYFDDIKTRI 346
LK +DIK I
Sbjct: 135 LKTQEDIKKNI 145
>gi|300772649|ref|ZP_07082519.1| DNA-directed DNA polymerase II [Sphingobacterium spiritivorum ATCC
33861]
gi|300760952|gb|EFK57778.1| DNA-directed DNA polymerase II [Sphingobacterium spiritivorum ATCC
33861]
Length = 560
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESA--DQVKGLPGIGKSMQDHIQEIVTTGKL 279
N +RA SF I+KLPF +A + + GIGK + IQEI+ TG
Sbjct: 23 NPFRAKAMASASFK-------IDKLPFAAATATVEDLSAQQGIGKGTAEKIQEIIQTGSF 75
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK---NEDSLTHSQRLG 335
++L+ + + + ++ G+GP ++ E G ++ +L NE+ L ++ G
Sbjct: 76 AELDQLIANTPPGLLDML-QIKGLGPKKILIIWQELGIESVGELYYACNENRLVEAKGFG 134
Query: 336 LKYFDDIKTRI 346
LK +DIK I
Sbjct: 135 LKTQEDIKKNI 145
>gi|405355838|ref|ZP_11024950.1| putative DNA polymerase family X [Chondromyces apiculatus DSM 436]
gi|397091110|gb|EJJ21937.1| putative DNA polymerase family X [Myxococcus sp. (contaminant ex
DSM 436)]
Length = 300
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKI------ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y KA + + P + E +K LPG+GKS+ + E++ TG+LS L+
Sbjct: 31 RVGAYRKAADTVAQWPQSVAELLAEEGEAGLKKLPGVGKSIAAAMAELIRTGQLSLLQRL 90
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL 334
E + L V GIG A++++ E G R+L++L+ H RL
Sbjct: 91 ESEHSPE--QLLASVPGIGAELARRIHDELGIRSLEELEQ---AAHDGRL 135
>gi|406984248|gb|EKE05334.1| hypothetical protein ACD_19C00355G0014 [uncultured bacterium]
Length = 555
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GH 316
+P IGKS+ +H+ EI TGK + E KD L + +G TA K+ + +
Sbjct: 58 IPSIGKSIAEHLNEIFRTGKSTHFEELMKDIPQEAFVLMA-LPKVGLKTAMKMMSELPKN 116
Query: 317 RTLDDLKNEDSL-THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
++ ++ L T +RL L Y +++ + + VE ++ ++ +VL G
Sbjct: 117 ELIEKIREAQKLMTKDKRLLLPYAENVASEV----VEWIKNGVEVEKIDVL--------G 164
Query: 376 SYRRGKASCGDLDVVI 391
S RR A+ GD+D+ +
Sbjct: 165 SLRRKSATVGDIDIAV 180
>gi|407796062|ref|ZP_11143018.1| hypothetical protein MJ3_04149 [Salimicrobium sp. MJ3]
gi|407019416|gb|EKE32132.1| hypothetical protein MJ3_04149 [Salimicrobium sp. MJ3]
Length = 574
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 221 INIYRAL-GED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
I +Y L GE+ R +Y KA +E+ + D + GIGK I+E + TGK
Sbjct: 16 IAVYLELKGENPFRISAYTKAAQALERDNRSLTEIDDFTKIKGIGKGTSTVIEEYIETGK 75
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNEDSLTHSQRL 334
+LE +++ I L ++ G+G KLYE+ TL E + +
Sbjct: 76 SPELEELQEEVPEGLIPLL-DLPGLGGKKLAKLYEQLGIVDKATLQKALEEGEVEKLEGF 134
Query: 335 G-------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL----CGGSYRRGKAS 383
G L+ D TR R + M+ +K EE L ++ + GS RR K +
Sbjct: 135 GQKSAEKMLQSLRDFGTRPDRLPIAYMQPFAKKV-EEYLHKLETIERFSLAGSMRRVKET 193
Query: 384 CGDLDVVI 391
GDLD +I
Sbjct: 194 IGDLDFII 201
>gi|433438359|ref|ZP_20408355.1| DNA polymerase X, partial [Haloferax sp. BAB2207]
gi|432189657|gb|ELK46741.1| DNA polymerase X, partial [Haloferax sp. BAB2207]
Length = 128
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQKIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
>gi|375096600|ref|ZP_09742865.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
gi|374657333|gb|EHR52166.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
Length = 578
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 27/182 (14%)
Query: 235 SYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
+Y KA +E P ++ + + ++ +P +G + I+E + TG + +L+
Sbjct: 31 AYEKAAQAVEGHPAELATLRSAELDEIPNVGSQLARKIREFLDTGSVGELDELRARVPTG 90
Query: 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDL-----------------KNEDSLTHSQRL 334
SL + G+GP A+++YE+ G + DDL ++ED+L + R
Sbjct: 91 LRSLL-TIPGLGPRRARQVYEELGITSPDDLLAALHEHRLRELRGWGARSEDNLAAAVRE 149
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
+ ++ + + ERLLQ+ LP+V + GS RR + S GD+D+++
Sbjct: 150 AQSAGERVRLGL---ALGVAERLLQRL--RPLPQVQRVEYAGSLRRMRDSIGDIDILVAS 204
Query: 394 PD 395
D
Sbjct: 205 DD 206
>gi|396463158|ref|XP_003836190.1| similar to BRCT domain containing protein [Leptosphaeria maculans
JN3]
gi|312212742|emb|CBX92825.1| similar to BRCT domain containing protein [Leptosphaeria maculans
JN3]
Length = 870
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 43 LVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
++ MG V LSK+VTH++A+D+ Q++ R + ++ W +D L++G ++S
Sbjct: 135 VLAMGGQVAPALSKQVTHLIALDVADQRCQLAISK--RLQLKMVLPHWFDDCLKVGRRIS 192
Query: 103 EDLYRIKLDPE 113
E Y I DPE
Sbjct: 193 ERPYTIP-DPE 202
>gi|406993381|gb|EKE12539.1| hypothetical protein ACD_13C00187G0002 [uncultured bacterium]
Length = 606
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 32/218 (14%)
Query: 206 PPDLN-KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKGL---P 260
P DL+ ++I +I + Y GED+ R +Y A IE I + K L P
Sbjct: 4 PKDLSLRSIAQILENIAAAYEVQGEDQFRIRAYQNAAAGIEHTGEDIRQLWEQKKLDDIP 63
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG--EVWGIGPATAQKL-----YE 313
G+G S+ H+ E+ TGK+S HF++ K F ++ G+GP TA KL +
Sbjct: 64 GVGVSIAQHLDELFRTGKVS---HFDQVTKKLPEGFFELLKLEGVGPKTAFKLAKAFQLK 120
Query: 314 KGHRTLDDLKNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLL-QKAGEEV 365
L LK + Q+L G + I+ R + E+M L Q + +
Sbjct: 121 NAREALAQLKTQAQAGQIQKLPGFAQETEQNILEAIEEREQKTGPERMGLFLAQSYADRM 180
Query: 366 LP--EVIILC-----GGSYRRGKASCGDLDVVIM--HP 394
+P E C GS RR + GD+D+ + HP
Sbjct: 181 VPYLEANQACLHVEPLGSLRRQAPTVGDIDLAMASSHP 218
>gi|328951369|ref|YP_004368704.1| PHP domain-containing protein [Marinithermus hydrothermalis DSM
14884]
gi|328451693|gb|AEB12594.1| PHP domain protein [Marinithermus hydrothermalis DSM 14884]
Length = 536
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 24/163 (14%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+A +G+PG+G+S+ ++E+ TG+ LE + L EV G+GP + L
Sbjct: 48 AARGFQGVPGVGRSLAALLEEVYRTGEFPYLEELLARVPPGVLELL-EVQGLGPKRVRAL 106
Query: 312 YEKGHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
+E G +L L ++E +L + R L + +
Sbjct: 107 WEAGVDSLGALVAWAEAGRIRALPGFGARSEAALLEAARFALANARRVHLPTGLEAARLL 166
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
L+ AG + GS RRG + G +D+V + P +
Sbjct: 167 LADLEGAG------IRAELAGSLRRGLETVGSVDLVALAPPER 203
>gi|407477853|ref|YP_006791730.1| PHP domain-containing protein [Exiguobacterium antarcticum B7]
gi|407061932|gb|AFS71122.1| PHP domain protein [Exiguobacterium antarcticum B7]
Length = 571
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 22/174 (12%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ KA ++E + + + GIGK ++E TTG + L E+ I
Sbjct: 30 AFRKAASLLEAAEVDLMDIEDFTAMKGIGKGTATVLEEFRTTGTSTALTELEQQVPEGLI 89
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQ-----------RLGLKYFDD 341
+L ++ G+G KL+E G D K D + L+ F+
Sbjct: 90 ALL-KIPGLGGKKLAKLHEVGVIDADSFAEKLADGTVEAMPGFGKKTVEKYSKALETFET 148
Query: 342 IKTRIP----RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
R+P R V ++ER L + + EV GGS+RR + +C DLD ++
Sbjct: 149 RPERLPYGVMRKSVAELERTLAEMEHIIRFEV----GGSFRRAEETCKDLDFIL 198
>gi|325104825|ref|YP_004274479.1| PHP domain-containing protein [Pedobacter saltans DSM 12145]
gi|324973673|gb|ADY52657.1| PHP domain protein [Pedobacter saltans DSM 12145]
Length = 560
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 243 IEKLPFKIE--SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
++KLP+K++ S +++ + G+GKS I E++ G + +L + + + G +
Sbjct: 37 VDKLPYKLKDKSLAELETIDGVGKSTASKIWELLQNGNIEELNNLAALTPAGVLDMLG-I 95
Query: 301 WGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP-------RH 349
G+GP +++ G + +L NE+ L ++ GLK +DIK I R
Sbjct: 96 KGVGPKKIAIIWKTLGIENIGELYYACNENRLIEAKGFGLKTQEDIKKAIEFKMASKGRF 155
Query: 350 EVEQMERL-------LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+E + L+K ++V P +I G +RR L+ +I D
Sbjct: 156 LYASIESVAYSYLNSLKKIADKVDPTCLIEITGEFRRKCEIIDKLEFLIAGTD 208
>gi|392375791|ref|YP_003207624.1| phP C-terminal domain-containing protein, partial [Candidatus
Methylomirabilis oxyfera]
gi|258593484|emb|CBE69823.1| PHP C-terminal domain protein [Candidatus Methylomirabilis oxyfera]
Length = 577
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGLP---GIG 263
N +I ++F ++ ++ +D F +Y +A +E L +IE+ GL GIG
Sbjct: 3 NLDIAKLFHEIADLLEI--QDENIFKIRAYRRAAMNLESLTEEIEAVAARGGLAEIAGIG 60
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K + IQ+ + TG++ LE + L + G+GP T + L+++ +D ++
Sbjct: 61 KDLAAKIQQAIETGRIEYLEELRTAIPRGVVELMA-IPGVGPKTTKLLFQQLQ--VDSVE 117
Query: 324 NEDSLT-HSQRLGL-----KYFDDI--KTRIPRHEVEQME--RLLQKAGE-----EVLPE 368
++L + LGL K D+I ++ + E+M R L A E E LPE
Sbjct: 118 RLETLALQGKLLGLPGIKQKTVDNILKGIQVVKTGRERMPLGRALPLALELVRILETLPE 177
Query: 369 VI-ILCGGSYRRGKASCGDLDVV 390
V I GS RR + + DLD++
Sbjct: 178 VTQISLAGSLRRMRETVKDLDLL 200
>gi|20808870|ref|NP_624041.1| family X DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|20517526|gb|AAM25645.1| DNA polymerase IV (family X) [Thermoanaerobacter tengcongensis MB4]
Length = 570
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 211 KNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
K + +I ++ + GE+ +S +YY A VIE L +E+ D++K + GIG+++
Sbjct: 4 KTVVDILNEIGLLLELKGENPFKSRAYYNAARVIELLDEDLETLVKEDRLKDVKGIGEAL 63
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ E++TTG++ E ++ I + ++ G+GP + LYEK G T+ +L+
Sbjct: 64 NKKLTELITTGRMEYYEKLKESVPPGLIEML-KIPGLGPKKIKTLYEKLGITTIGELE 120
>gi|403372683|gb|EJY86245.1| hypothetical protein OXYTRI_15763 [Oxytricha trifallax]
Length = 1103
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
LN I + + Y+ + + R +Y KAI + K IES D + L IG +++D
Sbjct: 978 LNDAILSQLEMIRDHYQEVNDQGRKIAYNKAIGELRKFDMPIESLDDLDELETIGANIRD 1037
Query: 269 HIQEIVTTGKLSKLE 283
HI+E + TGK+ E
Sbjct: 1038 HIREFIETGKVEGFE 1052
>gi|356980062|gb|AET43541.1| hypothetical protein MPWG_00051 [Micromonas pusilla virus PL1]
Length = 241
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 220 LINIYRALGE----DRRSFSYYKAIPVIEKLPFKIESADQV-KG---LPGIGKSMQDHIQ 271
++N R L + D +S +Y+KA ++ +P+ I + + KG +PGIGKS+ I
Sbjct: 89 IVNALRKLSDLEKDDFKSKAYWKAAEAVDNIPYTIVDGESLAKGETKVPGIGKSIAKKID 148
Query: 272 EIVTTGKLSKLEHFEK 287
E + TG +S+LE +K
Sbjct: 149 EFLETGLISRLEDLKK 164
>gi|126179709|ref|YP_001047674.1| phosphotransferase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862503|gb|ABN57692.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
Length = 576
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQ---VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y +A IE LP + + + +PG+GK + I+EI+ TG L L ++E
Sbjct: 34 AYRRAALAIETLPENVADVAREGDLDEIPGVGKGIAKKIREILETGSLGYLSSL-REELP 92
Query: 292 RTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNEDSLTHSQR----LGLKYFDDIKTRI 346
+ + GIGP A L E G RT+DDL+ + +L R G K +I +
Sbjct: 93 EGVQHLTRLEGIGPKKAIALSRELGIRTVDDLEAK-ALAGRIRDLPGFGEKTEANILASV 151
Query: 347 PRHEVEQMERLLQK---AGEEVLPEVIILC-------GGSYRRGKASCGDLDVV 390
RLL + E+ + L GS RR K + GD+D++
Sbjct: 152 RASRTATERRLLGQILPVAREIERRLASLASVRQVSLAGSIRRRKETIGDVDIL 205
>gi|172058181|ref|YP_001814641.1| hypothetical protein Exig_2172 [Exiguobacterium sibiricum 255-15]
gi|171990702|gb|ACB61624.1| PHP domain protein [Exiguobacterium sibiricum 255-15]
Length = 571
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ KA ++E + + + GIGK ++E TG + L E+ I
Sbjct: 30 AFRKAASLLEAAELDFMAIEDFTAMKGIGKGTATVLEEFRETGTSTALTELEQQVPEGLI 89
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQ-----------RLGLKYFDD 341
+L ++ G+G KL+E G D K D + L+ F+
Sbjct: 90 ALL-KIPGLGGKKLAKLHEVGVIDADSFAEKLADGTVEAMPGFGKKTVEKYSKALETFET 148
Query: 342 IKTRIP----RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM--HP 394
R+P R V ++ER L + + EV GGS+RR + +C DLD +I HP
Sbjct: 149 RPERLPYGVMRKSVSELERTLAGIDQIIRFEV----GGSFRRAEETCKDLDFIISTDHP 203
>gi|347836062|emb|CCD50634.1| similar to FCP1-like phosphatase [Botryotinia fuckeliana]
Length = 832
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKG-S 84
LV GV R +I Q++ G + +K+SK+VTHV+A + Q+V + A++
Sbjct: 546 LVPLGVDLMRSEI-AQQIESFGGKIHKKVSKRVTHVVASSQKTRTQKV--REAAKYPHIK 602
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++ QWL S+ +K E Y ++++P ADR Q N S GE S
Sbjct: 603 IVTQQWLTQSMSKWKKEDESEYLVEINP-----ADR--RQSGDLTNIPSPGEDSEESSDY 655
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
+ +ED E S+ D E P+ P S T L+ +S
Sbjct: 656 TESEDFEDDDTRSELDGE----GVMPDEPRGDISPTTDLNWSS 694
>gi|149275726|ref|ZP_01881871.1| DNA polymerase IV, family X [Pedobacter sp. BAL39]
gi|149233154|gb|EDM38528.1| DNA polymerase IV, family X [Pedobacter sp. BAL39]
Length = 542
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 243 IEKLPFKIE--SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
++KLP+ I+ S +++ + G+GKSM + E++ TG ++ L+ + + + G +
Sbjct: 21 VDKLPYAIQGKSLEEIASIDGLGKSMSAKVWELLETGTMNDLQQVLANTPEGIVEMLG-I 79
Query: 301 WGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRI 346
GIGP +++ G + +L NE+ L ++ GLK ++IK I
Sbjct: 80 KGIGPKKIAVIWKDLGIENIGELYYACNENRLIEAKGFGLKTQEEIKKII 129
>gi|169623538|ref|XP_001805176.1| hypothetical protein SNOG_15011 [Phaeosphaeria nodorum SN15]
gi|111056434|gb|EAT77554.1| hypothetical protein SNOG_15011 [Phaeosphaeria nodorum SN15]
Length = 865
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 43 LVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
++ MG + LSK VTH++A+DL Q++ R + ++ W +D L++G ++S
Sbjct: 135 VLAMGGQIAPALSKLVTHLIALDLSEERCQLAISK--RLQCLIVLPHWFDDCLKVGRRIS 192
Query: 103 EDLYRIKLDPEGENIADRVLSQIQG 127
E Y + DPE +L+QI
Sbjct: 193 ERPYTLP-DPE-------ILNQIDA 209
>gi|332981923|ref|YP_004463364.1| PHP domain-containing protein [Mahella australiensis 50-1 BON]
gi|332699601|gb|AEE96542.1| PHP domain protein [Mahella australiensis 50-1 BON]
Length = 574
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+S +YY A IE I+ + +++K + GIG ++ I E+ TTG L E +K+
Sbjct: 26 KSRAYYNAARAIEMQEKDIDELIALNELKDIKGIGDAITKKITELATTGHLEYYERLKKE 85
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN---EDSLTHSQRLGLKYFDDIKT 344
I + ++ G+GP Q LY+K G T+ +L+ E+ L + G K ++I
Sbjct: 86 IPPGLIEML-KIPGLGPKRIQTLYKKLGITTIGELEYACIENRLLELEGFGRKMQENILK 144
Query: 345 RI---PRHEVEQMERLLQKAGEEVLPEVI-------ILCGGSYRRGKASCGDLDVV 390
I R++ + + ++A + +L E+ I G+ RR K D+D+V
Sbjct: 145 GIQYVKRYQGQFLYCDAKRAADRLLDEIKSIQSIYDISIAGALRRRKEITKDIDMV 200
>gi|333896451|ref|YP_004470325.1| PHP domain-containing protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333111716|gb|AEF16653.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 570
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 211 KNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
K +T+I ++ + GE+ +S +YY A IE L IE D++K + GIG ++
Sbjct: 6 KTVTDILNEIGLLLELKGENPFKSRAYYNAARTIEVLDDDIEKLIKEDRLKDVKGIGDAL 65
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ E++TTG+L E+ + I + ++ G+GP + LY+K
Sbjct: 66 NKKLTELITTGRLEYYENLKASIPEGLIEML-KIPGLGPKKIKTLYDK 112
>gi|108758845|ref|YP_634132.1| DNA polymerase domain-containing protein [Myxococcus xanthus DK
1622]
gi|108462725|gb|ABF87910.1| DNA polymerase domain protein [Myxococcus xanthus DK 1622]
Length = 304
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKI------ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y KA I + P + E ++ LPG+GKS+ + E++ TG+LS L+
Sbjct: 35 RVGAYRKAAGTIAQWPQPVAELLAEEGEAGLRKLPGVGKSIAAAMAELIRTGQLSLLQRL 94
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL 334
E + L V GIG A++++ E RTL++L + H RL
Sbjct: 95 ETEHSPE--QLLASVPGIGAGLARRIHDELSVRTLEEL---EQAAHDGRL 139
>gi|332798675|ref|YP_004460174.1| PHP domain-containing protein [Tepidanaerobacter acetatoxydans Re1]
gi|438001663|ref|YP_007271406.1| DNA polymerase X family [Tepidanaerobacter acetatoxydans Re1]
gi|332696410|gb|AEE90867.1| PHP domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432178457|emb|CCP25430.1| DNA polymerase X family [Tepidanaerobacter acetatoxydans Re1]
Length = 573
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N + IF + N+ GE+ +Y KA IE LP +IE Q++ + GIGK+
Sbjct: 3 NFEVAFIFNDIANMLEIKGENFFKIRAYRKAAYTIENLPLEIEDLAKQSQLQEIEGIGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ + I EI+ TG E +K+ + + ++ G+G + +Y+ G ++++L+
Sbjct: 63 LSEKIYEIIDTGTCRYYEELKKNFPPGLVEML-KIPGMGAKKIKLVYDSLGISSIEELEE 121
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI--------ILCG-- 374
++R L+ I + + ++ ++ L + + +L + IL G
Sbjct: 122 A-----ARRHKLRTLPGIGVKTEQAILKGIQTLKNNSDKILLATALPIAERISSILSGMT 176
Query: 375 --------GSYRRGKASCGDLDVVI 391
GS RR K D+D+VI
Sbjct: 177 EVTNVEISGSLRRKKEMVKDIDIVI 201
>gi|451999096|gb|EMD91559.1| hypothetical protein COCHEDRAFT_1175602 [Cochliobolus
heterostrophus C5]
Length = 869
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 43 LVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
++ MG + LSK VTH++A+D+ Q++ R + +++ W +D L++G ++S
Sbjct: 135 VLAMGGQIAPSLSKWVTHLIALDISEPRCQLAISK--RLQLTIVLPHWFDDCLKVGRRIS 192
Query: 103 EDLYRIKLDPEGENIAD 119
E Y + P E +AD
Sbjct: 193 ERPYTL---PNPEILAD 206
>gi|451848258|gb|EMD61564.1| hypothetical protein COCSADRAFT_344408 [Cochliobolus sativus
ND90Pr]
Length = 870
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 43 LVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
++ MG + LSK VTH++A+D+ Q++ R + +++ W +D L++G ++S
Sbjct: 135 VLAMGGQIAPSLSKWVTHLIALDISEPRCQLAISK--RLQLTIVLPHWFDDCLKVGRRIS 192
Query: 103 EDLYRIKLDPEGENIAD 119
E Y + P E +AD
Sbjct: 193 ERPYTL---PNPEILAD 206
>gi|389691724|ref|ZP_10180518.1| PHP family phosphohydrolase, histidinol phosphatase [Microvirga sp.
WSM3557]
gi|388588707|gb|EIM28997.1| PHP family phosphohydrolase, histidinol phosphatase [Microvirga sp.
WSM3557]
Length = 580
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+A +++ +PG+G ++ + IQ + S+LE + + L + G+ P L
Sbjct: 69 AAGRLQEIPGVGAALSETIQRLHRDSTTSRLEALRTEVPAGVLELLA-IPGLRPQKVLDL 127
Query: 312 YEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL- 366
Y K G ++D+L+ +D L ++ G + + + T I +RL+ +AGE +
Sbjct: 128 YRKLGITSVDELEAACRQDRLKATKGFGPAFQNKVLTGIELMRRSHGQRLIHRAGEHLST 187
Query: 367 ---------PEVI-ILCGGSYRRGKASCGDLDVVIMHP 394
PE+ I+ G +RRG DL +V P
Sbjct: 188 LEANLRRSHPELTRIVPAGDFRRGSELVSDLALVAETP 225
>gi|320108153|ref|YP_004183743.1| PHP domain-containing protein [Terriglobus saanensis SP1PR4]
gi|319926674|gb|ADV83749.1| PHP domain protein [Terriglobus saanensis SP1PR4]
Length = 580
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQ----VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
R SY +A +E+ ++ Q + +PGIGK M +++++V TG + +
Sbjct: 26 RIRSYRRAAEAVEQQTQQLAEIAQDPKALLAIPGIGKGMAANVRDLVATGSMPLRDELLT 85
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKNEDSLTHSQ---RLGLKYFDDIK 343
+ + L + G+GP T L+ + +D L+ H R G K D I
Sbjct: 86 KYRPTMLDLL-RLPGMGPKTVALLWSALEISDIDALEAAAKAGHLAKLPRFGQKLIDKIA 144
Query: 344 TRIP-------RHEVEQMERLLQKAGEEVL--PEV-IILCGGSYRRGKASCGDLDVVIMH 393
I R ++ + + +L P + + GS RRG+ + GDLD+++
Sbjct: 145 KGIEDYRKNSGRFRIDDADETAARIAALILEFPGIDTVTPAGSLRRGRETVGDLDLLVTG 204
Query: 394 P 394
P
Sbjct: 205 P 205
>gi|448300512|ref|ZP_21490511.1| DNA-directed DNA polymerase [Natronorubrum tibetense GA33]
gi|445585331|gb|ELY39626.1| DNA-directed DNA polymerase [Natronorubrum tibetense GA33]
Length = 583
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N I F + ++ A + + +Y +A I+ P ++E+ D+ ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLAADDVEYKPRAYRRAAENIQAHPVPIGDRVEAGDEQILEEIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ + E V TG + +LE ++ + I+ + G+GP TA KLY E G +TLDDL
Sbjct: 64 DAIASKVVEYVETGSIEELEELREELPI-DIADITRIEGVGPKTAGKLYRELGVQTLDDL 122
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIP-RHEVEQMERLLQK--AGEEVLP-----EVII 371
+ + + G K ++I+ I EV Q L + ++VL E +
Sbjct: 123 EEAAEAGEIREIKGFGPKTEENIREGIEFAREVGQRHLLGEGRPLADDVLAFLESLEAVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVI 391
C GS RR + + GD+DV++
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLV 204
>gi|332524680|ref|ZP_08400879.1| hypothetical protein RBXJA2T_02737 [Rubrivivax benzoatilyticus JA2]
gi|332107988|gb|EGJ09212.1| hypothetical protein RBXJA2T_02737 [Rubrivivax benzoatilyticus JA2]
Length = 261
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT-----HSQRLGLKYFDD 341
+D + R+ L G GIG ATA +L+ G R ++ D+L H + L D
Sbjct: 8 RDWQGRSAWLVGASTGIGRATASRLHALGARVTVSARDADALARFVAAHPGSVALPL--D 65
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVL-----PEVIILCGGSYRRGKASCGDLDVVIMH 393
+ R +Q A EV+ P++ + C G+Y +A+ DLDV + H
Sbjct: 66 VTDRA----------AVQAAAREVIAGSGTPDLALYCAGTYTPMRATAFDLDVALRH 112
>gi|383458498|ref|YP_005372487.1| DNA polymerase domain-containing protein [Corallococcus coralloides
DSM 2259]
gi|380732624|gb|AFE08626.1| DNA polymerase domain-containing protein [Corallococcus coralloides
DSM 2259]
Length = 301
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 232 RSFSYYKAIPVIEKLP------FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y KA I P E ++ LPG+GKS+ + E+V TG + LE
Sbjct: 31 RIGAYRKAAATIANWPDSVAQVLAAEGEAGLRALPGVGKSIAGTVAELVRTGHVGLLERL 90
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYE 313
E + L V GIGP A+++++
Sbjct: 91 EGEASPE--GLLASVPGIGPELAKRIHD 116
>gi|395216088|ref|ZP_10401181.1| php domain protein [Pontibacter sp. BAB1700]
gi|394455581|gb|EJF10036.1| php domain protein [Pontibacter sp. BAB1700]
Length = 581
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 22/209 (10%)
Query: 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKL--PFKIESADQV 256
L++N NK I ++F KL + L D F SY +E + P + +S ++
Sbjct: 9 LIHNTALENKKIIKLF-KLASELMEL-HDENPFKVRSYVNGAAALELVEDPLETKSQAEL 66
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKG 315
+G+ G+GKS+ + EI TG ++L+ + + + GIGP + L+ E G
Sbjct: 67 EGITGVGKSIAARVIEIKETGSFTELDQLLSVTPPGVVEML-RIKGIGPKKVRNLWKELG 125
Query: 316 HRTLDDLKN---EDSLTHSQRLGLKYFDDIKT----------RIPRHEVEQMERLLQKAG 362
T+++L + +D ++ + G K ++IK ++ E E + L +
Sbjct: 126 AETVEELLDACEQDKVSKLKGFGAKTQENIKQALLFTQQNRGKLLFAEAEPTAQALLEQV 185
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVI 391
++ LP+ + G RR L++VI
Sbjct: 186 QQALPDAEVALVGDVRRCLEIIEKLELVI 214
>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
Length = 593
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGI 262
P LN ++ +IF ++ ++ E+ R +Y A I F+ + Q LPGI
Sbjct: 2 PILNSDVAKIFEEIADLLEINDENPFRIRAYRSAARTIRNFKFQFHTLIGQGQFPKLPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
G+ +++ ++EI+ TG+ LE ++ L + G+GP Q+L
Sbjct: 62 GQDLEEKVREIIATGRCLLLEALRRNFPPHFNDLLA-IPGLGPKRVQRL 109
>gi|344211605|ref|YP_004795925.1| DNA polymerase IV [Haloarcula hispanica ATCC 33960]
gi|343782960|gb|AEM56937.1| DNA polymerase IV [Haloarcula hispanica ATCC 33960]
Length = 578
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I + + ++ A G + + +Y +A I P IE D V + +G
Sbjct: 4 NDEIATLLEEFADLLDAKGVEYKPRAYRRAAENIRDFPGAIEGLAAEGEDSVGEIDAVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG++ +L ++ V +L V G+GP + LYE G TLD+L+
Sbjct: 64 AISSKVVEYVNTGEIEELTELREELPVEMDALTA-VEGVGPKSVGSLYEALGITTLDELE 122
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPE 368
+ Q + G K +I I LL +A G + + E
Sbjct: 123 SAAEAGRIQEVSGFGAKTEQNILDNIDFAREAHERSLLGEARPYGDRIREYMTGGDAVEE 182
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPD 395
+ GGS RR + + GD+DV++ D
Sbjct: 183 CAL--GGSIRRWRPTIGDVDVLVGSTD 207
>gi|406958539|gb|EKD86168.1| hypothetical protein ACD_37C00435G0003 [uncultured bacterium]
Length = 599
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 32/215 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES---ADQVKGLPGIG 263
NK I ++F ++ Y E + F +Y A +E L +I+ +++ +PGIG
Sbjct: 16 NKEIAQLFRQVAASYSIKNEAKFRFQMLAYQNAADAVEGLTTQIKDLYKENKLDVIPGIG 75
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEK--DEKVRTISLFGEVWGIGPATAQKLY--------E 313
++Q ++E+ TG K++HFE+ + T+ +F ++ GP A KL +
Sbjct: 76 ATIQGRLEELFKTG---KVKHFEQVMEGIPPTVFIFMQIPSFGPKKAFKLATHFKLNNPK 132
Query: 314 KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP--RHEVEQMERLLQKAGEEVLPEVII 371
L+ + + + + G K DI I R + ++L +V ++I
Sbjct: 133 TAIDELEKIAKKGEIASLEGFGEKSEADIIRAINEFREGKGKTTKMLLPYANDVAEQIIT 192
Query: 372 LCG-----------GSYRRGKASCGDLDVVIMHPD 395
GS RR K GD+D+ + P+
Sbjct: 193 YLKQSEFVKEAQVLGSLRRMKPLVGDIDIAVTSPN 227
>gi|338532907|ref|YP_004666241.1| DNA polymerase domain-containing protein [Myxococcus fulvus HW-1]
gi|337259003|gb|AEI65163.1| DNA polymerase domain-containing protein [Myxococcus fulvus HW-1]
Length = 300
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKG------LPGIGKSMQDHIQEIVTTGKLSKLEHF 285
R +Y KA I + P + KG LPG+GKS+ + E++ TG LS L+
Sbjct: 31 RVGAYRKAADTIAQWPQPVAELLAEKGEAGLRELPGVGKSIAAAMAELIRTGHLSLLQRL 90
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL 334
E + L V GIG A++++ E G R+L++L + H RL
Sbjct: 91 ETEHSPE--QLLASVPGIGAELARRIHDELGVRSLEEL---EQAAHDGRL 135
>gi|260837479|ref|XP_002613731.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
gi|229299120|gb|EEN69740.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
Length = 186
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 319 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
L DL KN L H Q+LGLKYF+D + RIPR E+ +M+ L K
Sbjct: 19 LTDLRKNPGKLNHHQQLGLKYFEDFEKRIPREEMLEMQPELLK 61
>gi|313768413|ref|YP_004062093.1| hypothetical protein MpV1_210 [Micromonas sp. RCC1109 virus MpV1]
gi|312599109|gb|ADQ91133.1| hypothetical protein MpV1_210 [Micromonas sp. RCC1109 virus MpV1]
Length = 308
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV----KGLPGIGKS 265
N + +IF L + Y ++ ++ +Y A I KLPFK+ + ++ K +PGIGKS
Sbjct: 149 NNELADIFDSL-SYYE--DDEHKAKAYDDAAYNISKLPFKVTNGKELSKGPKKVPGIGKS 205
Query: 266 MQDHIQEIVTTGKLSKLEHF 285
+ I E + TGK+ KLE+
Sbjct: 206 IAKIIDEFLETGKVKKLENL 225
>gi|378706317|gb|AFC35118.1| hypothetical protein OtV6_210 [Ostreococcus tauri virus RT-2011]
Length = 359
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGKS 265
N ++ E F L Y E ++ +Y A I LPFK+ E A + +PGIGK
Sbjct: 97 NNDLVEAFESLC--YYETDEFKKK-AYDDAAYAISNLPFKVTDGHELAKGPQKVPGIGKG 153
Query: 266 MQDHIQEIVTTGKLSKLEHFEK 287
+ D I E + TGK++KLE ++
Sbjct: 154 IADKINEFLDTGKINKLEKLKR 175
>gi|357404435|ref|YP_004916359.1| DNA polymerase V subunit C [Methylomicrobium alcaliphilum 20Z]
gi|351717100|emb|CCE22765.1| component of DNA polymerase V, subunit C [Methylomicrobium
alcaliphilum 20Z]
Length = 429
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
TG + L + + EK+ I GEVWGIGP TA KL + G T+ DL ++ S
Sbjct: 165 TGGVLDLSNPVRREKLMRIVPVGEVWGIGPRTAAKLNQLGIHTVWDLASQSS 216
>gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
Length = 589
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
++KG PG+G +M ++E V GK++ L+ + + + + G+GP +Y++
Sbjct: 53 KLKGTPGLGPTMIKRVEEAVQNGKIAFLDELRAETPAVKLEMM-RIPGVGPKKINAIYDQ 111
Query: 315 GHRT----LDDLKNEDSL---------THSQRL-GLKYFDDIKTRIPRHEVEQMERLLQK 360
H T L+ +D + T + L GL + R R +V E +
Sbjct: 112 LHVTTLAELEQACKDDKVAKIPGFGKKTQEKILQGLAFLKQHADRF-RFDVAFAEAERIR 170
Query: 361 AGEEVLPEVIIL-CGGSYRRGKASCGDLDVV 390
LPE++ L GS RR + + D+D+V
Sbjct: 171 TALATLPEIVRLEVAGSLRRRRETVKDIDMV 201
>gi|367467812|ref|ZP_09467728.1| DNA-dependent DNA polymerase family X [Patulibacter sp. I11]
gi|365817122|gb|EHN12104.1| DNA-dependent DNA polymerase family X [Patulibacter sp. I11]
Length = 576
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N I E+ +L ++Y G R +Y A I P + + +V LPG+GK+
Sbjct: 9 NAAIAELLDELGDLYELEGAVVHRVLAYRNAAKAIRDAPRSVAAMTREGRVTELPGVGKT 68
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
+++ + +V TG++ LE + + + + G+GP A+KL++
Sbjct: 69 LEEKLTALVETGEIPALEKL-RSRVPAGLVVITRLPGLGPKRARKLHD 115
>gi|386002425|ref|YP_005920724.1| PHP C-terminal domain-containing protein, partial [Methanosaeta
harundinacea 6Ac]
gi|357210481|gb|AET65101.1| PHP C-terminal domain protein [Methanosaeta harundinacea 6Ac]
Length = 572
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ + + ++ ++ GE + +Y +A +E + +E+ +++ +PG+GK+
Sbjct: 3 NEEVARLLREMGDLLELRGESSFKVVAYRRAARTVESMKEDLEAIAGRGELEAIPGVGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I E + TG++ + ++ L ++ G+GP T L++K G T+ +L+
Sbjct: 63 IAGKISEFLETGRIEARDRLLQETPPGLAELL-QISGLGPKTVSMLHQKLGVSTVAELEV 121
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIP-------RHEVEQMERLLQKAGEE 364
+RL G++ + +RIP E+ R ++ G+
Sbjct: 122 AAREHRVRRLPRMGPTSEKNILRGIERWKKRSSRIPLGVALPLAQEILGHLRKVEGIGD- 180
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ GS RRG+ + GD+D++ P
Sbjct: 181 ------LNVAGSLRRGRETVGDIDILATSP 204
>gi|406874088|gb|EKD24116.1| hypothetical protein ACD_81C00106G0008 [uncultured bacterium]
Length = 581
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV--RTISLFGEVWGIGPATAQKLY- 312
++ +PG+G S+ + I+E + TG++ E +K V RT+S V G+GP +KLY
Sbjct: 57 IEKIPGVGVSIAEKIEEYIKTGRIQHYEELKKKIPVDLRTLS---AVEGLGPKKIKKLYW 113
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-- 370
E +TL DL+ + +L+ + L D + + ++ +E + G VL V
Sbjct: 114 ELDIKTLADLE-QAALSGA----LNKVDGFGPKSTENIIKGIEFVKTSGGRLVLGNVFPA 168
Query: 371 ----------------ILCGGSYRRGKASCGDLDVVIMHPD 395
+ GS RR K + GD D++++ D
Sbjct: 169 IAHIKSELEGIKGVEKVSIVGSARRKKETVGDFDLLVVAKD 209
>gi|300711869|ref|YP_003737683.1| PHP domain-containing protein [Halalkalicoccus jeotgali B3]
gi|299125552|gb|ADJ15891.1| PHP domain protein [Halalkalicoccus jeotgali B3]
Length = 580
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 36/213 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I +F + ++ A + + +Y +A I + P IE D V+ + G+G
Sbjct: 4 NAEIAALFEEYADLLEAQDVEYKPNTYRRAAESIREYPTAIEDLASKGQDAVEEIDGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG + +LE E+ + + V G+GP T LYE G L DL+
Sbjct: 64 AISSKVIEYVDTGAIEELEG-ERAKLPVAMDELTSVEGVGPKTVGTLYEALGVENLADLE 122
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL--LQKAGE-EVLPEVIILC------- 373
S Q +IK P+ E + L +KA E E+L + L
Sbjct: 123 TVASAGEIQ--------EIKGFGPKTEQNILSGLEFARKASERELLGDTRPLADDLLDYL 174
Query: 374 -----------GGSYRRGKASCGDLDVVIMHPD 395
GS RR + + GD+DV+ D
Sbjct: 175 RGHDGIERAEVAGSIRRWRETSGDVDVLAASDD 207
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,179,998,735
Number of Sequences: 23463169
Number of extensions: 252849657
Number of successful extensions: 696771
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 818
Number of HSP's that attempted gapping in prelim test: 694243
Number of HSP's gapped (non-prelim): 2013
length of query: 398
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 253
effective length of database: 8,957,035,862
effective search space: 2266130073086
effective search space used: 2266130073086
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)