BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015933
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06766|DPOLB_RAT DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4
Length = 335
Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>sp|Q9UGP5|DPOLL_HUMAN DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1
Length = 575
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 30/268 (11%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPD 395
++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPD 436
>sp|Q4R380|DPOLL_MACFA DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1
Length = 575
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 196/409 (47%), Gaps = 45/409 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ + I + L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSKYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ +T EAPN+ P+S + ++ T ++
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTK---EAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHI------TDPS---------LLYNPP-----DLNKNITEIFGKLINIYRA 226
D S H+ DPS + P + N +ITE L Y
Sbjct: 210 DLEALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPD 436
>sp|Q27958|DPOLB_BOVIN DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3
Length = 335
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>sp|Q8K409|DPOLB_MOUSE DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3
Length = 335
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPD 395
+DV++ HP+
Sbjct: 191 MDVLLTHPN 199
>sp|P06746|DPOLB_HUMAN DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3
Length = 335
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>sp|Q5RKI3|DPOLL_RAT DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1
Length = 573
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 186/407 (45%), Gaps = 28/407 (6%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
L+ + L +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLPQLPP-GAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQD 149
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
+ R + S K + ++ + +S+ +S+A
Sbjct: 150 ASAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADL 209
Query: 189 SPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALG 228
S H+ T P P + N +ITE L Y G
Sbjct: 210 QALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQG 269
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H
Sbjct: 270 DKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHI--S 327
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
+ V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 328 DSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPR 387
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD
Sbjct: 388 EEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPD 434
>sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1
Length = 573
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 185/410 (45%), Gaps = 38/410 (9%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+ + +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLP-QLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKS 146
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLST 185
++ + +T + + T + +SSE T+ +S+
Sbjct: 147 GQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSS 206
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A + H+ T P P + N +ITE L Y
Sbjct: 207 ADLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYS 266
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 267 VQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI 326
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R
Sbjct: 327 --SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDR 384
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD
Sbjct: 385 MPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPD 434
>sp|Q6DRD3|DPOLB_DANRE DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2
Length = 336
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 387 LDVVIMHPD 395
+D+++ HPD
Sbjct: 190 IDILLTHPD 198
>sp|O57383|DPOLB_XENLA DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3
Length = 334
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPD 395
D+++ HPD
Sbjct: 192 DILLTHPD 199
>sp|Q7T6Y4|DPOLX_MIMIV Probable DNA polymerase family X OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L318 PE=1 SV=2
Length = 354
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKVRTI 294
KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++ I
Sbjct: 44 KALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQIEGI 103
Query: 295 SLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPR 348
V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++ IPR
Sbjct: 104 QELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRDIPR 163
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K
Sbjct: 164 KEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMK 212
>sp|Q9JIW4|DPOLM_MOUSE DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1
SV=2
Length = 496
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +++L++ A + LP + G +RRGK D+D +I HP+
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPE 339
>sp|P42118|TDT_XENLA DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1
Length = 507
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 2/186 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 386 DLDVVI 391
D+D++I
Sbjct: 339 DVDILI 344
>sp|Q9NP87|DPOLM_HUMAN DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1
SV=1
Length = 494
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHP 394
+I HP
Sbjct: 333 FLITHP 338
>sp|O02789|TDT_MONDO DNA nucleotidylexotransferase OS=Monodelphis domestica GN=DNTT PE=2
SV=1
Length = 518
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 388 DVVIMHP 394
D +I P
Sbjct: 347 DFLITSP 353
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase OS=Mus musculus GN=Dntt PE=1 SV=3
Length = 530
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>sp|O57486|TDT_AMBME DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2
SV=2
Length = 510
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 210 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 386 DLDVVIMHP 394
D+D++I P
Sbjct: 339 DVDMLITSP 347
>sp|Q92089|TDT_ONCMY DNA nucleotidylexotransferase OS=Oncorhynchus mykiss GN=dntt PE=2
SV=1
Length = 501
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Query: 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
++ +A V++ LP + ++GLP +G+ + ++EI+T G+ K+E DE+ +
Sbjct: 179 CLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFGRSFKVEEIRCDERYQ 238
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHE 350
+ LF V+G+GP TA+K Y +G R+L ++ E + L QR G Y+ DI + + E
Sbjct: 239 ALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAGFLYYSDISKAVSKAE 298
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
+ + +++ + P+ I+ G +RRGK D+D ++ P+
Sbjct: 299 AKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
>sp|A4PCD4|TDT_EULMA DNA nucleotidylexotransferase OS=Eulemur macaco GN=DNTT PE=3 SV=1
Length = 511
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE R+ +Y AI I+ P I+SA+Q++ +PG G + +E +TG L + E F+K
Sbjct: 197 GESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKIVHLWKEFASTGTLKEAEEFQK 256
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDI-KTR 345
D + + LF ++G+G + A + Y+KG RT++ + K++DS T ++GL++++D KT
Sbjct: 257 DPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTV 316
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
E E ++ + + + + ++ G +RRGK D+D+V+
Sbjct: 317 TIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVGADVDMVL 360
>sp|P04053|TDT_HUMAN DNA nucleotidylexotransferase OS=Homo sapiens GN=DNTT PE=1 SV=3
Length = 509
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 6/189 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>sp|P06526|TDT_BOVIN DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2
Length = 509
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ L+++A LP+ + G +RRGK D+D +I P
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSP 351
>sp|P36195|TDT_CHICK DNA nucleotidylexotransferase OS=Gallus gallus GN=DNTT PE=2 SV=1
Length = 506
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRK 397
D+D +I P ++
Sbjct: 343 DIDFLITSPGQR 354
>sp|P25615|DPO4_YEAST DNA polymerase IV OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=POL4 PE=1 SV=4
Length = 582
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
Length = 1219
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 30 GVQNRRLQIWRQKLVQMGATVEEKLSKKVTH--VLAMDLEAL--------LQQVSKQHLA 79
G+ +RL + +++ G V L+ +H VLAM E L ++ K+ L
Sbjct: 825 GIMAKRLML---EVLMAGGKVSNNLAH-ASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLL 880
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRIK------LDPEGENIADRVLSQIQGNGN--- 130
+ + V+ WLE+SL+ EK+ ED+Y ++ D E + ++ +++ G+
Sbjct: 881 KKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASQGSAQT 940
Query: 131 ----------TSSDGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
TSS G S+ R K+ +SST ++ Q + E S S E
Sbjct: 941 KEPASSKIAITSSRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEK 1000
Query: 179 LTNTLSTASASPD 191
++ LS + D
Sbjct: 1001 VSTRLSDIAEETD 1013
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNX41 PE=3
SV=2
Length = 670
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 171 NSPMSSESLTNTLSTASASPDF-SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
N+ SS+ T T S + SPDF + +I D S L D+NK I F L N Y LG
Sbjct: 356 NTEASSQPSTGTTSPVNHSPDFIKNKYIIDNSCL---DDINKKIMANFIGLANDYTELGT 412
Query: 230 DRRSFS 235
SFS
Sbjct: 413 IFNSFS 418
>sp|Q7TT79|MCPH1_MOUSE Microcephalin OS=Mus musculus GN=Mcph1 PE=2 SV=1
Length = 822
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 17 GIFAGMRVFLVE----KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQ 72
G F V VE KG +N +Q L MGATV + L+K+VTHV+ D Q
Sbjct: 9 GAFLKDVVAYVEVWSSKGTENYSRTFAKQ-LEDMGATVSKTLNKQVTHVIFKD----GYQ 63
Query: 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLY 106
+ + ++ W+E G V E L+
Sbjct: 64 STWDKAQKTGAKLVSVLWVEKCRMAGALVDESLF 97
>sp|Q5A2Z7|ALS6_CANAL Agglutinin-like protein 6 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ALS6 PE=1 SV=1
Length = 1366
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 118 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
A+ V++ + ++++ + S K I+ S ++ + G + T + SEAPNS + SE
Sbjct: 1237 ANPVVTSTFDDKSSAAVNQPSKTKSIEESIGSLDSVNETNNGFIATLSQSEAPNSLIHSE 1296
Query: 178 SLTNTLS-TASAS 189
S++ T++ T AS
Sbjct: 1297 SISTTMAKTTDAS 1309
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|P04152|UMUC_ECOLI Protein UmuC OS=Escherichia coli (strain K12) GN=umuC PE=1 SV=2
Length = 422
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
TG + L + E+ K+ + +VWGIG ++KL G +T+ DL + D
Sbjct: 160 TGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTD 210
>sp|A6Q5H2|PURA_NITSB Adenylosuccinate synthetase OS=Nitratiruptor sp. (strain SB155-2)
GN=purA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL-----KYFDDIKTRIPRHEVEQMER 356
GIGPA + K+ +GHR + +LK+ D+L H + L YF+ + P +ME
Sbjct: 128 GIGPAYSDKVSRQGHR-IGELKDIDTL-HKKILDYFETNKIYFEALGISFPSENELRME- 184
Query: 357 LLQKAGEEVLPEVI 370
LQ+ E ++P V+
Sbjct: 185 -LQRYQEVLMPYVV 197
>sp|Q6NGD8|DPO4_CORDI DNA polymerase IV OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=dinB PE=3 SV=1
Length = 451
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 258 GLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
GLP G GK + ++ + E +EK+ + + G +WG+GP T KL
Sbjct: 137 GLPASVGGGAGKQVAKICSDLAKPDGIYLCAASEHEEKMYPLPV-GRLWGVGPVTRTKLQ 195
Query: 313 EKGHRTLDDL 322
+ G T+ DL
Sbjct: 196 QLGVETIGDL 205
>sp|Q04350|POLB_CHPVE ORFB polyprotein OS=Cryphonectria hypovirus 1 (strain EP713) PE=1
SV=1
Length = 3165
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG--PATAQKLYEKGHRTLDDLKN 324
+DH++ I+T+GKL H D ++ + WGIG P + Y ++D +
Sbjct: 3041 EDHLERILTSGKLRYANHIPVDMAMQLLGNGHVTWGIGGVPTITRPRYPCDGMWVEDPSS 3100
Query: 325 EDSLTH 330
S H
Sbjct: 3101 RKSYAH 3106
>sp|Q8NNP4|DPO4_CORGL DNA polymerase IV OS=Corynebacterium glutamicum (strain ATCC 13032
/ DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQM 354
E +Q+
Sbjct: 241 AEAKQI 246
>sp|A4QFK8|DPO4_CORGB DNA polymerase IV OS=Corynebacterium glutamicum (strain R) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQM 354
E +Q+
Sbjct: 241 AEAKQI 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,198,445
Number of Sequences: 539616
Number of extensions: 6260447
Number of successful extensions: 18813
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 18710
Number of HSP's gapped (non-prelim): 162
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)