Query 015933
Match_columns 398
No_of_seqs 322 out of 977
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 1.8E-52 6E-57 418.7 22.3 191 207-397 14-205 (360)
2 1jms_A Terminal deoxynucleotid 100.0 4.1E-52 1.4E-56 418.5 24.2 191 207-397 33-225 (381)
3 2bcq_A DNA polymerase lambda; 100.0 4.2E-51 1.4E-55 405.1 19.2 192 204-397 7-198 (335)
4 2fmp_A DNA polymerase beta; nu 100.0 2.5E-49 8.6E-54 392.5 21.2 188 209-396 11-200 (335)
5 3b0x_A DNA polymerase beta fam 100.0 6.2E-39 2.1E-43 339.0 19.5 188 208-396 1-208 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 6.3E-37 2.2E-41 323.8 18.3 182 207-393 7-204 (578)
7 2dun_A POL MU, DNA polymerase 99.9 4.7E-26 1.6E-30 194.4 9.5 98 12-109 4-107 (133)
8 2coe_A Deoxynucleotidyltransfe 99.9 2.9E-24 9.9E-29 182.0 10.0 102 10-111 12-117 (120)
9 2jw5_A DNA polymerase lambda; 99.8 1.3E-21 4.4E-26 163.0 2.1 98 13-111 6-106 (106)
10 1wf6_A Similar to S.pombe -RAD 99.7 2.2E-16 7.5E-21 136.1 10.3 95 12-110 34-128 (132)
11 3pa6_A Microcephalin; BRCT dom 99.6 4.2E-16 1.4E-20 129.8 9.4 91 17-112 6-99 (107)
12 3ii6_X DNA ligase 4; XRCC4, NH 99.6 4.5E-15 1.6E-19 142.1 9.8 94 13-108 159-263 (263)
13 4id3_A DNA repair protein REV1 99.6 6.5E-15 2.2E-19 118.0 8.3 88 13-108 2-91 (92)
14 2ebw_A DNA repair protein REV1 99.5 2.5E-14 8.5E-19 116.2 8.4 91 11-109 5-96 (97)
15 3l3e_A DNA topoisomerase 2-bin 99.5 2.1E-14 7.1E-19 119.1 6.3 95 14-111 11-105 (107)
16 2cou_A ECT2 protein; BRCT doma 99.4 6E-14 2.1E-18 117.0 4.7 88 16-109 10-97 (109)
17 2d8m_A DNA-repair protein XRCC 99.4 1.8E-13 6.3E-18 117.3 7.4 94 12-111 16-109 (129)
18 3l46_A Protein ECT2; alternati 99.4 2.3E-13 7.8E-18 114.1 5.3 88 17-110 20-107 (112)
19 3pc6_A DNA repair protein XRCC 99.3 4E-12 1.4E-16 105.1 8.9 89 17-109 6-95 (104)
20 1z56_C DNA ligase IV; DNA repa 99.3 1.6E-12 5.4E-17 123.9 3.2 96 12-108 154-261 (264)
21 2ep8_A Pescadillo homolog 1; A 99.2 1.9E-11 6.4E-16 100.4 7.5 84 12-107 6-100 (100)
22 2nte_A BARD-1, BRCA1-associate 99.1 3.6E-11 1.2E-15 110.7 5.4 84 21-109 2-87 (210)
23 2kp7_A Crossover junction endo 99.1 1.3E-10 4.4E-15 92.9 7.7 68 208-276 13-80 (87)
24 1t15_A Breast cancer type 1 su 99.1 1.1E-10 3.7E-15 107.1 5.5 84 21-109 4-92 (214)
25 1l0b_A BRCA1; TANDEM-BRCT, thr 99.0 2.3E-10 8E-15 106.2 7.2 90 18-109 4-95 (229)
26 3ef0_A RNA polymerase II subun 99.0 2E-10 6.7E-15 115.1 7.1 88 17-108 281-371 (372)
27 3olc_X DNA topoisomerase 2-bin 99.0 3.8E-10 1.3E-14 109.8 8.1 90 16-111 197-287 (298)
28 1jaj_A DNA polymerase beta-lik 99.0 1.3E-11 4.5E-16 111.0 -4.4 54 334-396 6-59 (174)
29 3pc7_A DNA ligase 3; DNA repai 99.0 7.8E-10 2.7E-14 88.4 6.2 73 16-103 14-87 (88)
30 3ii6_X DNA ligase 4; XRCC4, NH 98.9 1.4E-09 4.9E-14 103.8 7.8 92 12-109 4-96 (263)
31 3ef1_A RNA polymerase II subun 98.9 1.5E-09 5.1E-14 110.5 6.1 88 17-108 351-441 (442)
32 3u3z_A Microcephalin; DNA repa 98.8 2.7E-09 9.3E-14 97.8 5.4 80 27-109 15-95 (199)
33 3sqd_A PAX-interacting protein 98.8 4.1E-09 1.4E-13 98.1 5.8 86 18-109 13-98 (219)
34 2etx_A Mediator of DNA damage 98.8 5E-09 1.7E-13 96.5 6.1 83 18-109 9-91 (209)
35 3al2_A DNA topoisomerase 2-bin 98.8 9.1E-09 3.1E-13 96.7 7.5 85 20-109 8-94 (235)
36 1vq8_Y 50S ribosomal protein L 98.8 2.2E-10 7.6E-15 108.0 -3.6 97 294-391 14-138 (241)
37 1kzy_C Tumor suppressor P53-bi 98.8 1E-08 3.5E-13 97.7 7.5 94 13-109 10-136 (259)
38 1l0b_A BRCA1; TANDEM-BRCT, thr 98.6 4.6E-08 1.6E-12 90.6 7.4 93 16-109 115-213 (229)
39 3olc_X DNA topoisomerase 2-bin 98.6 6E-08 2.1E-12 94.2 8.5 86 15-106 102-187 (298)
40 2vxb_A DNA repair protein RHP9 98.6 5.9E-08 2E-12 91.5 6.4 90 18-110 2-118 (241)
41 1t15_A Breast cancer type 1 su 98.5 8.7E-08 3E-12 87.5 5.2 94 15-109 112-211 (214)
42 1kzy_C Tumor suppressor P53-bi 98.5 1.7E-07 5.9E-12 89.2 6.3 88 15-106 152-249 (259)
43 1z56_C DNA ligase IV; DNA repa 98.4 2.8E-08 9.5E-13 94.4 0.1 90 16-110 3-102 (264)
44 3l41_A BRCT-containing protein 98.4 1.3E-07 4.4E-12 88.0 3.7 81 20-109 7-87 (220)
45 3u3z_A Microcephalin; DNA repa 98.3 3.7E-07 1.3E-11 83.5 5.0 83 15-109 116-198 (199)
46 2vxb_A DNA repair protein RHP9 98.2 2E-06 6.7E-11 81.0 6.6 81 15-103 148-241 (241)
47 2etx_A Mediator of DNA damage 98.1 3.5E-06 1.2E-10 77.4 6.9 88 17-110 114-203 (209)
48 2nte_A BARD-1, BRCA1-associate 98.0 2.6E-06 8.9E-11 78.0 4.5 85 16-104 102-209 (210)
49 2k6g_A Replication factor C su 97.9 3.4E-05 1.2E-09 63.9 8.8 81 14-98 28-108 (109)
50 2cok_A Poly [ADP-ribose] polym 97.9 2.7E-05 9.4E-10 64.9 7.6 87 16-105 8-104 (113)
51 2edu_A Kinesin-like protein KI 97.8 1.2E-05 4E-10 65.3 4.3 57 252-322 38-95 (98)
52 1l7b_A DNA ligase; BRCT, autos 97.8 2.3E-05 7.9E-10 63.0 6.0 78 14-97 3-80 (92)
53 2ebu_A Replication factor C su 97.8 6.5E-05 2.2E-09 62.5 7.5 81 13-97 17-97 (112)
54 3al2_A DNA topoisomerase 2-bin 97.6 4.9E-05 1.7E-09 71.2 5.9 91 16-109 133-229 (235)
55 2duy_A Competence protein come 97.5 2.4E-05 8.2E-10 60.1 1.5 46 253-313 26-71 (75)
56 2l42_A DNA-binding protein RAP 97.4 0.00015 5.2E-09 58.3 4.9 85 15-111 8-97 (106)
57 3arc_U Photosystem II 12 kDa e 97.2 0.00028 9.4E-09 57.2 4.8 47 252-313 24-70 (97)
58 1s5l_U Photosystem II 12 kDa e 97.2 0.00036 1.2E-08 59.4 5.1 47 252-313 61-107 (134)
59 1x2i_A HEF helicase/nuclease; 96.9 0.0013 4.5E-08 49.6 5.4 51 254-313 14-64 (75)
60 2duy_A Competence protein come 96.9 0.00094 3.2E-08 51.0 4.3 47 293-345 25-72 (75)
61 3sqd_A PAX-interacting protein 96.8 0.0025 8.7E-08 58.8 7.8 85 16-108 120-218 (219)
62 2owo_A DNA ligase; protein-DNA 96.8 0.0031 1.1E-07 67.2 9.1 116 254-379 480-611 (671)
63 2i5h_A Hypothetical protein AF 96.8 0.001 3.5E-08 60.4 4.4 45 249-304 126-171 (205)
64 3arc_U Photosystem II 12 kDa e 96.7 0.00055 1.9E-08 55.4 2.1 49 292-346 23-72 (97)
65 1dgs_A DNA ligase; AMP complex 96.7 0.002 7E-08 68.6 7.0 114 254-378 475-600 (667)
66 1kft_A UVRC, excinuclease ABC 96.6 0.0013 4.6E-08 50.5 3.4 51 254-313 24-74 (78)
67 1z00_A DNA excision repair pro 96.5 0.0024 8.4E-08 50.3 4.5 51 254-313 19-69 (89)
68 1ixr_A Holliday junction DNA h 96.4 0.0019 6.4E-08 58.6 3.8 53 255-313 73-125 (191)
69 2a1j_B DNA excision repair pro 96.4 0.0038 1.3E-07 49.5 4.9 51 254-313 32-82 (91)
70 1s5l_U Photosystem II 12 kDa e 96.2 0.0025 8.5E-08 54.3 3.3 45 292-342 60-105 (134)
71 2a1j_B DNA excision repair pro 96.2 0.0037 1.3E-07 49.5 3.8 52 291-343 28-81 (91)
72 2ztd_A Holliday junction ATP-d 96.1 0.0032 1.1E-07 58.0 3.6 53 255-313 89-141 (212)
73 1z00_A DNA excision repair pro 96.1 0.0057 2E-07 48.1 4.5 51 292-343 16-68 (89)
74 1cuk_A RUVA protein; DNA repai 96.1 0.0027 9.3E-08 58.1 2.8 53 255-313 74-126 (203)
75 1x2i_A HEF helicase/nuclease; 95.8 0.0051 1.7E-07 46.3 2.9 50 293-343 12-63 (75)
76 3bqs_A Uncharacterized protein 95.8 0.0057 1.9E-07 49.0 3.2 31 296-326 5-35 (93)
77 1kft_A UVRC, excinuclease ABC 95.7 0.0024 8.2E-08 49.1 0.8 50 294-344 23-74 (78)
78 3l41_A BRCT-containing protein 95.5 0.026 9E-07 52.0 7.1 90 16-106 111-211 (220)
79 2i5h_A Hypothetical protein AF 95.3 0.016 5.6E-07 52.5 4.7 52 293-344 130-187 (205)
80 4glx_A DNA ligase; inhibitor, 95.2 0.018 6.1E-07 60.6 5.6 84 254-347 480-565 (586)
81 2bgw_A XPF endonuclease; hydro 95.2 0.019 6.5E-07 52.6 5.1 50 255-313 163-212 (219)
82 3mab_A Uncharacterized protein 95.0 0.0083 2.8E-07 48.1 1.7 32 295-326 4-35 (93)
83 1u9l_A Transcription elongatio 95.0 0.016 5.5E-07 43.9 3.2 52 293-344 4-57 (70)
84 2ztd_A Holliday junction ATP-d 95.0 0.0075 2.6E-07 55.5 1.7 53 291-343 84-140 (212)
85 3qbz_A DDK kinase regulatory s 94.9 0.018 6E-07 50.3 3.8 48 17-64 57-115 (160)
86 3oq0_A DBF4, protein DNA52; DD 94.9 0.04 1.4E-06 47.6 5.9 48 18-65 20-78 (151)
87 1vq8_Y 50S ribosomal protein L 94.6 0.0061 2.1E-07 57.2 0.0 53 254-314 15-67 (241)
88 4b21_A Probable DNA-3-methylad 94.6 0.052 1.8E-06 50.4 6.4 63 254-317 107-172 (232)
89 1ixr_A Holliday junction DNA h 94.5 0.013 4.5E-07 53.0 2.1 52 292-343 69-124 (191)
90 2owo_A DNA ligase; protein-DNA 94.5 0.0075 2.6E-07 64.3 0.6 48 299-346 450-500 (671)
91 2w9m_A Polymerase X; SAXS, DNA 94.5 0.024 8.1E-07 59.6 4.2 54 252-312 95-148 (578)
92 2a1j_A DNA repair endonuclease 94.4 0.027 9.2E-07 41.6 3.2 30 295-325 4-33 (63)
93 1z00_B DNA repair endonuclease 94.3 0.043 1.5E-06 43.0 4.4 35 290-325 13-47 (84)
94 1cuk_A RUVA protein; DNA repai 94.3 0.016 5.5E-07 52.9 2.1 51 292-342 70-124 (203)
95 3s6i_A DNA-3-methyladenine gly 94.3 0.067 2.3E-06 49.5 6.4 56 261-316 102-160 (228)
96 3oq4_A DBF4, protein DNA52; DD 94.3 0.086 2.9E-06 44.7 6.4 48 18-65 4-61 (134)
97 1wcn_A Transcription elongatio 94.2 0.03 1E-06 42.3 3.1 30 296-325 8-37 (70)
98 1dgs_A DNA ligase; AMP complex 94.1 0.012 4E-07 62.8 1.0 48 299-346 445-495 (667)
99 4gfj_A Topoisomerase V; helix- 94.1 0.042 1.4E-06 55.0 4.8 33 294-326 467-506 (685)
100 3b0x_A DNA polymerase beta fam 94.1 0.026 8.8E-07 59.2 3.6 64 252-322 91-154 (575)
101 2a1j_A DNA repair endonuclease 93.9 0.035 1.2E-06 41.0 2.8 49 254-313 4-53 (63)
102 3fhg_A Mjogg, N-glycosylase/DN 93.2 0.35 1.2E-05 43.8 9.1 123 238-364 50-185 (207)
103 2edu_A Kinesin-like protein KI 93.1 0.063 2.2E-06 42.9 3.4 44 294-343 39-87 (98)
104 4dez_A POL IV 1, DNA polymeras 93.1 0.073 2.5E-06 52.2 4.5 29 298-326 181-209 (356)
105 1b22_A DNA repair protein RAD5 92.7 0.047 1.6E-06 45.2 2.3 50 293-343 24-75 (114)
106 3c65_A Uvrabc system protein C 92.2 0.021 7.2E-07 52.9 -0.6 50 254-313 173-222 (226)
107 3sgi_A DNA ligase; HET: DNA AM 92.1 0.028 9.4E-07 59.3 0.0 89 254-352 491-587 (615)
108 3t7k_A RTT107, regulator of TY 92.0 0.12 4.1E-06 48.4 4.2 67 40-109 40-119 (256)
109 3osn_A DNA polymerase IOTA; ho 91.8 0.12 4.2E-06 52.0 4.5 29 297-325 236-264 (420)
110 1z00_B DNA repair endonuclease 91.7 0.093 3.2E-06 41.1 2.7 50 254-314 18-68 (84)
111 2va8_A SSO2462, SKI2-type heli 91.6 0.13 4.4E-06 54.8 4.5 35 288-323 651-685 (715)
112 1jx4_A DNA polymerase IV (fami 91.6 0.11 3.6E-06 51.0 3.6 30 297-326 180-209 (352)
113 3gqc_A DNA repair protein REV1 91.3 0.14 4.8E-06 52.9 4.3 29 297-325 317-345 (504)
114 2yg9_A DNA-3-methyladenine gly 91.1 0.36 1.2E-05 44.4 6.5 61 254-316 104-167 (225)
115 4glx_A DNA ligase; inhibitor, 91.0 0.05 1.7E-06 57.2 0.6 49 298-346 449-500 (586)
116 3i0w_A 8-oxoguanine-DNA-glycos 90.9 0.54 1.8E-05 44.9 7.7 59 254-315 170-231 (290)
117 3bq0_A POL IV, DBH, DNA polyme 90.6 0.11 3.9E-06 50.8 2.7 30 297-326 181-210 (354)
118 2zj8_A DNA helicase, putative 90.6 0.09 3.1E-06 56.1 2.1 52 291-343 643-696 (720)
119 2bgw_A XPF endonuclease; hydro 90.3 0.17 5.8E-06 46.1 3.4 50 293-343 160-211 (219)
120 1im4_A DBH; DNA polymerase PAL 89.8 0.12 4.2E-06 47.4 2.1 28 297-324 186-213 (221)
121 3huf_A DNA repair and telomere 89.7 0.18 6.2E-06 48.9 3.2 58 36-97 126-187 (325)
122 3bzc_A TEX; helix-turn-helix, 89.4 0.33 1.1E-05 52.7 5.2 51 252-314 506-557 (785)
123 2jhn_A ALKA, 3-methyladenine D 89.2 0.39 1.3E-05 46.0 5.2 59 255-317 174-232 (295)
124 4f4y_A POL IV, DNA polymerase 89.1 0.13 4.5E-06 50.7 1.7 29 298-326 182-210 (362)
125 3c1y_A DNA integrity scanning 88.9 0.19 6.6E-06 49.8 2.9 58 287-345 307-366 (377)
126 2aq4_A DNA repair protein REV1 88.2 0.28 9.7E-06 49.4 3.6 29 297-325 243-273 (434)
127 3im1_A Protein SNU246, PRE-mRN 87.7 1.6 5.6E-05 42.0 8.6 28 297-324 159-186 (328)
128 3c65_A Uvrabc system protein C 87.6 0.11 3.6E-06 48.2 0.0 49 294-344 172-222 (226)
129 2h56_A DNA-3-methyladenine gly 87.5 0.81 2.8E-05 42.2 6.0 61 254-316 96-159 (233)
130 2p6r_A Afuhel308 helicase; pro 87.5 0.46 1.6E-05 50.4 4.9 40 285-325 623-662 (702)
131 2nrt_A Uvrabc system protein C 86.8 0.55 1.9E-05 43.2 4.3 46 294-342 167-215 (220)
132 1ylq_A Putative nucleotidyltra 86.1 0.93 3.2E-05 35.7 4.8 30 365-394 14-45 (96)
133 2nrt_A Uvrabc system protein C 86.0 0.49 1.7E-05 43.5 3.6 49 254-313 168-217 (220)
134 3pzp_A DNA polymerase kappa; D 85.3 0.57 1.9E-05 48.4 4.0 28 298-325 341-368 (517)
135 1wcn_A Transcription elongatio 85.1 0.96 3.3E-05 33.9 4.2 52 254-313 7-58 (70)
136 1t94_A Polymerase (DNA directe 84.9 0.67 2.3E-05 47.0 4.3 40 297-337 284-323 (459)
137 3vdp_A Recombination protein R 84.8 0.48 1.7E-05 43.2 2.8 21 292-312 23-43 (212)
138 4ecq_A DNA polymerase ETA; tra 84.5 0.53 1.8E-05 47.5 3.3 30 297-326 255-285 (435)
139 2fmp_A DNA polymerase beta; nu 84.2 0.81 2.8E-05 44.6 4.4 51 293-343 55-115 (335)
140 2q0z_X Protein Pro2281; SEC63, 84.1 2.3 7.7E-05 41.2 7.5 28 297-324 163-190 (339)
141 1no5_A Hypothetical protein HI 83.4 2.8 9.7E-05 33.8 6.8 46 346-395 9-55 (114)
142 1vdd_A Recombination protein R 83.2 0.61 2.1E-05 42.9 2.8 21 292-312 9-29 (228)
143 3sgi_A DNA ligase; HET: DNA AM 82.2 0.27 9.1E-06 51.9 0.0 53 295-348 458-519 (615)
144 1exn_A 5'-exonuclease, 5'-nucl 81.9 0.66 2.3E-05 44.4 2.6 26 299-325 207-232 (290)
145 3c1y_A DNA integrity scanning 81.6 1.2 4.1E-05 44.2 4.4 21 293-313 345-365 (377)
146 1kea_A Possible G-T mismatches 81.6 0.96 3.3E-05 41.3 3.5 22 293-314 113-134 (221)
147 3nyb_A Poly(A) RNA polymerase 81.5 2.5 8.6E-05 40.8 6.7 42 355-396 46-88 (323)
148 3n0u_A Probable N-glycosylase/ 81.5 1.7 5.8E-05 39.8 5.2 50 264-316 100-152 (219)
149 2rff_A Putative nucleotidyltra 81.1 3.6 0.00012 33.3 6.5 40 354-394 19-60 (111)
150 3q8k_A Flap endonuclease 1; he 81.0 0.73 2.5E-05 45.0 2.6 26 299-325 236-261 (341)
151 2bcq_A DNA polymerase lambda; 80.6 0.47 1.6E-05 46.3 1.1 51 293-343 55-113 (335)
152 1kg2_A A/G-specific adenine gl 80.2 1 3.5E-05 41.2 3.2 22 293-314 107-128 (225)
153 3psf_A Transcription elongatio 79.8 1.3 4.6E-05 49.3 4.5 47 254-312 717-765 (1030)
154 4gns_A Chitin biosynthesis pro 79.6 1.9 6.5E-05 38.1 4.6 88 19-110 162-255 (290)
155 4e8f_A Poly(A) RNA polymerase 79.0 2.9 0.0001 41.7 6.4 39 357-395 71-110 (405)
156 3fhf_A Mjogg, N-glycosylase/DN 78.9 2 7E-05 39.1 4.8 92 266-364 96-192 (214)
157 2xhi_A N-glycosylase/DNA lyase 78.1 2.6 8.8E-05 41.5 5.6 55 261-316 215-274 (360)
158 3psf_A Transcription elongatio 77.4 1.1 3.8E-05 49.9 3.0 45 293-343 715-765 (1030)
159 2ihm_A POL MU, DNA polymerase 76.9 0.87 3E-05 44.9 1.7 46 297-342 63-118 (360)
160 1kg2_A A/G-specific adenine gl 76.4 3.7 0.00013 37.4 5.8 66 232-304 85-152 (225)
161 1pu6_A 3-methyladenine DNA gly 76.2 1.3 4.5E-05 40.3 2.7 25 292-316 118-142 (218)
162 3n5n_X A/G-specific adenine DN 76.1 5.9 0.0002 37.7 7.3 21 294-314 127-148 (287)
163 3psi_A Transcription elongatio 75.8 2 6.9E-05 48.7 4.5 47 254-312 714-762 (1219)
164 3bzc_A TEX; helix-turn-helix, 75.7 1.9 6.5E-05 46.8 4.1 45 293-343 506-555 (785)
165 3qe9_Y Exonuclease 1; exonucle 75.6 1.5 5.2E-05 43.0 3.1 26 299-324 229-255 (352)
166 3mab_A Uncharacterized protein 74.9 1.5 5E-05 34.9 2.3 35 252-290 2-36 (93)
167 1b22_A DNA repair protein RAD5 74.7 1.2 4.2E-05 36.6 1.8 64 252-324 24-94 (114)
168 4f92_B U5 small nuclear ribonu 74.5 4 0.00014 48.1 6.8 29 297-325 1559-1587(1724)
169 4fh3_A Poly(A) RNA polymerase 74.1 6.9 0.00024 37.6 7.4 39 357-395 43-82 (349)
170 1rxw_A Flap structure-specific 74.0 1.5 5.2E-05 42.5 2.6 26 299-325 239-264 (336)
171 1a76_A Flap endonuclease-1 pro 73.6 1.7 5.7E-05 42.0 2.8 23 299-323 229-251 (326)
172 3bqs_A Uncharacterized protein 73.5 1.3 4.5E-05 35.1 1.7 56 252-313 2-57 (93)
173 3psi_A Transcription elongatio 73.1 1.6 5.5E-05 49.5 2.8 46 293-344 712-763 (1219)
174 1pzn_A RAD51, DNA repair and r 72.6 1.2 4.2E-05 43.3 1.6 45 296-340 36-82 (349)
175 1kea_A Possible G-T mismatches 72.5 3.9 0.00013 37.2 4.9 57 218-274 76-135 (221)
176 1ci4_A Protein (barrier-TO-aut 72.4 3 0.0001 32.8 3.4 45 278-324 3-47 (89)
177 2abk_A Endonuclease III; DNA-r 72.1 2.8 9.5E-05 37.8 3.8 23 292-314 106-128 (211)
178 3vdp_A Recombination protein R 71.9 1.8 6.1E-05 39.4 2.4 39 247-285 18-57 (212)
179 1z3e_B DNA-directed RNA polyme 70.0 5.2 0.00018 30.2 4.2 23 254-276 41-63 (73)
180 3ory_A Flap endonuclease 1; hy 69.9 1.5 5.1E-05 43.2 1.5 24 299-324 255-279 (363)
181 3n5n_X A/G-specific adenine DN 69.1 4.1 0.00014 38.8 4.3 80 218-304 90-172 (287)
182 1ul1_X Flap endonuclease-1; pr 69.0 2.4 8.1E-05 41.9 2.7 31 293-324 224-260 (379)
183 4e9f_A Methyl-CPG-binding doma 68.7 2 6.7E-05 37.5 1.9 23 252-274 102-124 (161)
184 1orn_A Endonuclease III; DNA r 68.6 5.9 0.0002 36.1 5.2 43 232-274 89-133 (226)
185 1jms_A Terminal deoxynucleotid 68.6 1.8 6.1E-05 43.0 1.7 46 297-342 82-137 (381)
186 2b4v_A RNA editing complex pro 68.6 8.4 0.00029 39.2 6.8 65 331-395 17-87 (468)
187 1wot_A Putative minimal nucleo 68.5 5.8 0.0002 31.1 4.5 47 346-394 4-52 (98)
188 3fsp_A A/G-specific adenine gl 68.2 4.6 0.00016 39.5 4.6 66 232-304 94-161 (369)
189 1z3e_B DNA-directed RNA polyme 68.1 1.9 6.6E-05 32.6 1.4 45 300-344 13-59 (73)
190 1jx4_A DNA polymerase IV (fami 68.1 6.5 0.00022 38.1 5.7 53 256-318 180-234 (352)
191 1orn_A Endonuclease III; DNA r 67.2 3.8 0.00013 37.5 3.5 22 293-314 111-132 (226)
192 1mpg_A ALKA, 3-methyladenine D 67.2 4.3 0.00015 38.2 4.1 26 291-316 203-228 (282)
193 1b43_A Protein (FEN-1); nuclea 66.8 2.8 9.7E-05 40.6 2.8 26 299-325 241-266 (340)
194 3r8n_M 30S ribosomal protein S 65.7 4.5 0.00016 33.2 3.4 25 293-317 14-39 (114)
195 2abk_A Endonuclease III; DNA-r 65.2 6 0.00021 35.6 4.5 57 218-274 70-129 (211)
196 3k4g_A DNA-directed RNA polyme 64.6 2.7 9.3E-05 32.9 1.7 43 302-344 18-62 (86)
197 3gfk_B DNA-directed RNA polyme 64.4 2.4 8.3E-05 32.6 1.4 44 301-344 21-66 (79)
198 2izo_A FEN1, flap structure-sp 64.0 2.5 8.7E-05 41.1 1.8 25 299-324 238-262 (346)
199 1vdd_A Recombination protein R 63.8 3.1 0.0001 38.3 2.2 138 247-390 4-181 (228)
200 3mfi_A DNA polymerase ETA; DNA 62.8 3 0.0001 43.1 2.1 26 297-322 309-338 (520)
201 1gm5_A RECG; helicase, replica 62.6 2.5 8.7E-05 45.8 1.6 27 297-323 117-143 (780)
202 2i1q_A DNA repair and recombin 62.4 4.2 0.00014 38.5 3.0 45 297-341 5-51 (322)
203 3k4g_A DNA-directed RNA polyme 61.7 9.4 0.00032 29.7 4.3 23 254-276 44-66 (86)
204 2csb_A Topoisomerase V, TOP61; 61.6 17 0.00059 34.2 6.9 84 269-354 387-484 (519)
205 3fhg_A Mjogg, N-glycosylase/DN 61.5 3.5 0.00012 37.1 2.2 22 252-273 115-136 (207)
206 4ebj_A Aminoglycoside nucleoti 61.0 14 0.00049 34.6 6.1 48 347-395 18-68 (272)
207 3u5c_S 40S ribosomal protein S 60.6 4.8 0.00016 34.6 2.7 25 293-317 28-53 (146)
208 2ikf_A RNA uridylyl transferas 59.7 9.2 0.00031 37.1 4.9 43 348-394 49-94 (353)
209 4dez_A POL IV 1, DNA polymeras 59.3 13 0.00043 36.0 5.9 52 256-317 180-233 (356)
210 3gfk_B DNA-directed RNA polyme 59.2 9.9 0.00034 29.1 4.0 23 254-276 48-70 (79)
211 2xhi_A N-glycosylase/DNA lyase 58.6 10 0.00035 37.1 5.1 51 223-273 210-272 (360)
212 3i0w_A 8-oxoguanine-DNA-glycos 58.5 11 0.00037 35.7 5.1 47 227-273 175-230 (290)
213 3osn_A DNA polymerase IOTA; ho 56.8 11 0.00039 37.5 5.2 53 256-318 236-290 (420)
214 4gfj_A Topoisomerase V; helix- 56.6 3.9 0.00013 41.0 1.6 51 292-342 619-672 (685)
215 3ci0_K Pseudopilin GSPK; gener 56.4 2.6 8.7E-05 40.3 0.3 75 249-325 153-235 (298)
216 1pu6_A 3-methyladenine DNA gly 56.0 9.5 0.00032 34.5 4.1 43 232-274 93-141 (218)
217 3hj4_A Minor editosome-associa 55.7 25 0.00086 34.8 7.3 36 360-395 37-73 (384)
218 3iz6_M 40S ribosomal protein S 54.9 8.1 0.00028 33.3 3.2 25 293-317 26-51 (152)
219 3j20_O 30S ribosomal protein S 54.8 8.4 0.00029 33.1 3.2 25 293-317 21-46 (148)
220 3gqc_A DNA repair protein REV1 52.7 17 0.00057 37.3 5.7 53 256-318 317-371 (504)
221 2xzm_M RPS18E; ribosome, trans 52.6 9.3 0.00032 33.1 3.2 25 293-317 28-53 (155)
222 4e9f_A Methyl-CPG-binding doma 51.7 6.2 0.00021 34.2 2.0 20 294-313 103-122 (161)
223 1mpg_A ALKA, 3-methyladenine D 51.7 19 0.00065 33.7 5.5 53 225-278 170-230 (282)
224 3bq0_A POL IV, DBH, DNA polyme 51.3 14 0.00049 35.6 4.8 53 256-318 181-235 (354)
225 2vqe_M 30S ribosomal protein S 50.0 6.2 0.00021 33.0 1.6 25 293-317 15-40 (126)
226 4b21_A Probable DNA-3-methylad 49.7 13 0.00046 33.9 4.0 21 253-273 149-169 (232)
227 2h56_A DNA-3-methyladenine gly 49.6 9.6 0.00033 34.9 3.0 42 232-273 107-157 (233)
228 2zc2_A DNAD-like replication p 48.6 9.8 0.00034 28.4 2.4 19 305-323 59-77 (78)
229 3e1s_A Exodeoxyribonuclease V, 48.4 4.1 0.00014 42.4 0.3 47 299-345 15-63 (574)
230 1kny_A Kntase, kanamycin nucle 48.3 20 0.00067 33.0 5.0 27 369-395 31-59 (253)
231 1px5_A 2'-5'-oligoadenylate sy 48.2 15 0.00053 35.3 4.4 25 370-394 56-82 (349)
232 4f4y_A POL IV, DNA polymerase 48.0 15 0.0005 35.8 4.2 53 256-318 181-235 (362)
233 2aq4_A DNA repair protein REV1 46.7 17 0.00059 36.2 4.6 56 256-319 243-301 (434)
234 1r89_A TRNA nucleotidyltransfe 46.4 17 0.00059 36.6 4.5 27 369-395 40-68 (437)
235 1coo_A RNA polymerase alpha su 45.5 19 0.00064 28.7 3.7 23 254-276 56-78 (98)
236 2yg9_A DNA-3-methyladenine gly 44.1 22 0.00075 32.3 4.5 42 232-273 115-165 (225)
237 3fsp_A A/G-specific adenine gl 42.6 11 0.00038 36.7 2.4 22 293-314 116-137 (369)
238 3pkr_A FLIG, flagellar motor s 42.3 1.2E+02 0.0043 28.3 9.5 87 236-323 87-188 (279)
239 1q79_A Poly(A) polymerase alph 42.1 33 0.0011 35.2 6.0 30 366-395 92-122 (514)
240 2z43_A DNA repair and recombin 41.5 5.5 0.00019 37.9 0.0 48 296-343 13-62 (324)
241 3s6i_A DNA-3-methyladenine gly 41.4 22 0.00077 32.3 4.1 46 228-273 102-158 (228)
242 1t94_A Polymerase (DNA directe 39.9 33 0.0011 34.3 5.5 52 256-318 284-337 (459)
243 3pq1_A Poly(A) RNA polymerase; 39.1 64 0.0022 32.7 7.4 39 357-395 161-200 (464)
244 2i1q_A DNA repair and recombin 38.8 59 0.002 30.3 6.8 62 254-323 3-71 (322)
245 2ziu_A MUS81 protein; helix-ha 38.0 23 0.00078 33.5 3.8 59 254-314 237-303 (311)
246 3fhf_A Mjogg, N-glycosylase/DN 37.5 19 0.00065 32.6 2.9 22 253-274 123-145 (214)
247 1coo_A RNA polymerase alpha su 36.2 6.6 0.00022 31.4 -0.3 49 296-344 24-74 (98)
248 2hhp_A Poly(A) polymerase; tem 35.7 48 0.0016 34.1 6.0 28 368-395 81-109 (530)
249 3n0u_A Probable N-glycosylase/ 35.2 13 0.00045 33.8 1.5 20 254-273 129-149 (219)
250 3mfi_A DNA polymerase ETA; DNA 34.8 16 0.00054 37.6 2.1 59 256-318 309-390 (520)
251 1ci4_A Protein (barrier-TO-aut 33.9 19 0.00066 28.1 2.0 57 254-313 18-79 (89)
252 2kp7_A Crossover junction endo 33.3 24 0.00081 27.3 2.5 21 293-313 56-76 (87)
253 2i5u_A DNAD domain protein; st 32.2 20 0.00069 27.2 1.9 19 305-323 64-82 (83)
254 4ecq_A DNA polymerase ETA; tra 31.8 58 0.002 32.4 5.7 54 256-318 255-310 (435)
255 3t7k_A RTT107, regulator of TY 30.2 1.2E+02 0.0043 28.1 7.2 85 14-100 131-241 (256)
256 2va8_A SSO2462, SKI2-type heli 29.5 3E+02 0.01 28.5 11.1 49 254-313 657-705 (715)
257 3im1_A Protein SNU246, PRE-mRN 29.4 3.6E+02 0.012 25.2 11.2 52 254-313 157-208 (328)
258 3e1s_A Exodeoxyribonuclease V, 28.9 11 0.00038 39.1 -0.2 50 261-318 18-68 (574)
259 3bbn_M Ribosomal protein S13; 28.8 5.4 0.00019 34.1 -2.1 22 295-316 62-84 (145)
260 2ziu_A MUS81 protein; helix-ha 27.0 36 0.0012 32.1 3.1 33 292-325 234-266 (311)
261 3lda_A DNA repair protein RAD5 26.4 36 0.0012 33.6 3.0 22 302-323 90-111 (400)
262 2zix_A Crossover junction endo 26.0 9.8 0.00033 36.2 -1.2 59 254-314 233-299 (307)
263 3pzp_A DNA polymerase kappa; D 24.1 90 0.0031 31.8 5.6 52 256-318 340-393 (517)
264 2kz3_A Putative uncharacterize 23.9 58 0.002 24.9 3.1 52 300-361 9-60 (83)
265 2jhn_A ALKA, 3-methyladenine D 23.3 31 0.0011 32.5 1.8 21 253-273 209-229 (295)
266 2csb_A Topoisomerase V, TOP61; 22.6 2.7E+02 0.0093 26.1 8.0 65 233-311 399-463 (519)
267 2fcl_A Hypothetical protein TM 21.1 1.3E+02 0.0046 25.7 5.3 36 354-392 22-61 (169)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=1.8e-52 Score=418.66 Aligned_cols=191 Identities=31% Similarity=0.573 Sum_probs=183.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 015933 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (398)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (398)
.++|++|+++|++||++|++.|+.||++||++||++|++||++|+++.++.+|||||+++|++|.||++||++.++|+|+
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~ 93 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVR 93 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHh
Confidence 57899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-ccCchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHHhhhc
Q 015933 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (398)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~-~~~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~~~ 365 (398)
+++.+.++.+|++|||||||||++||++||+||+||+. +++|+..|++|++||+|+.++|||+||+++.++|.+.+..+
T Consensus 94 ~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~ 173 (360)
T 2ihm_A 94 CSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQT 173 (360)
T ss_dssp HSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhc
Confidence 98888999999999999999999999999999999994 35899999999999999999999999999999999988888
Q ss_pred CCCeEEEEechhhcCCcccCCeeEEEecCCCC
Q 015933 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397 (398)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~ 397 (398)
.|++.|++||||||||++|||||||||||++.
T Consensus 174 ~~~~~v~i~GSyRRgket~gDvDilit~~~~~ 205 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQGHDVDFLITHPEEG 205 (360)
T ss_dssp CTTCEEEECHHHHTTCSEESEEEEEEECSSTT
T ss_pred CCCcEEEEccccccCCCccCCeEEEEecCChh
Confidence 99999999999999999999999999999864
No 2
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=4.1e-52 Score=418.46 Aligned_cols=191 Identities=27% Similarity=0.528 Sum_probs=183.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 015933 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (398)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (398)
+++|++|+++|++||++|++.|+.||++||++||++|++||++|+++.++.+|||||++|+++|.||++||++++||+|+
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~ 112 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 112 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHh
Confidence 68899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-c-cCchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHHhhh
Q 015933 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-E-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (398)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~-~-~~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~~ 364 (398)
+++.+.++.+|++|||||||||++||++||+||+||+. . .+++..|++|++||+|+.+||||+||+++.++|.+.+..
T Consensus 113 ~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 113 NDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999995 3 379999999999999999999999999999999998888
Q ss_pred cCCCeEEEEechhhcCCcccCCeeEEEecCCCC
Q 015933 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397 (398)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~ 397 (398)
+.|++.|++||||||||++||||||||||+++.
T Consensus 193 ~~~~~~v~i~GSyRRgket~gDvDilit~~~~~ 225 (381)
T 1jms_A 193 FLPDALVTMTGGFRRGKMTGHDVDFLITSPEAT 225 (381)
T ss_dssp HCTTCEEEECHHHHTTCSCBSSEEEEEECTTCC
T ss_pred cCCCcEEEEccccccCCCCcCCeEEEEeCCCcc
Confidence 899999999999999999999999999999874
No 3
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=4.2e-51 Score=405.10 Aligned_cols=192 Identities=39% Similarity=0.707 Sum_probs=180.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 015933 204 YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (398)
Q Consensus 204 ~~~~~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (398)
.+++|+|++|+++|++||++|++.|++||++||++||++|++||++|+++.++.+|||||+++|++|.||++||++.++|
T Consensus 7 ~~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le 86 (335)
T 2bcq_A 7 QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLD 86 (335)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGG
T ss_pred CCCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHHhh
Q 015933 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363 (398)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~ 363 (398)
+|+.. ++++++|++|||||||||++||++||+||+||+.+.+++..|++|++||+|+.+||||+||.++.++|.+.+.
T Consensus 87 ~l~~~--~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~ 164 (335)
T 2bcq_A 87 HISES--VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQ 164 (335)
T ss_dssp GCCTT--HHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHH
T ss_pred HHhhh--hHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHH
Confidence 99754 5599999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCeEEEEechhhcCCcccCCeeEEEecCCCC
Q 015933 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397 (398)
Q Consensus 364 ~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~ 397 (398)
.+.|++.+++||||||||++||||||||+|+++.
T Consensus 165 ~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~ 198 (335)
T 2bcq_A 165 AFNSGLLCVACGSYRRGKATCGDVDVLITHPDGR 198 (335)
T ss_dssp TTCTTCEEEECHHHHTTCSEESSEEEEEECTTSS
T ss_pred hcCCCcEEEEccccccCCCCCCCeEEEEecCCch
Confidence 8889999999999999999999999999999865
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=2.5e-49 Score=392.49 Aligned_cols=188 Identities=41% Similarity=0.719 Sum_probs=181.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHh
Q 015933 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287 (398)
Q Consensus 209 ~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~ 287 (398)
+|++|+++|++||++|++.|+| ||++||++||++|++||++|+++.++.+|||||+++|++|.||++||++.+||++++
T Consensus 11 ~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~ 90 (335)
T 2fmp_A 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ 90 (335)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHc
Confidence 6999999999999999988888 899999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh-ccCchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 015933 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366 (398)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~-~~~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~~~~ 366 (398)
++.+.++.+|++|||||||||++||++||+||+||++ +++|+..|++|++||+|+.+||||+||.++.+.|.+.+..+.
T Consensus 91 ~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 170 (335)
T 2fmp_A 91 DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD 170 (335)
T ss_dssp CHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999999997 678999999999999999999999999999999999888889
Q ss_pred CCeEEEEechhhcCCcccCCeeEEEecCCC
Q 015933 367 PEVIILCGGSYRRGKASCGDLDVVIMHPDR 396 (398)
Q Consensus 367 p~~~v~~~Gs~RRgke~~gDvDiLit~~~~ 396 (398)
|++.+++||||||||++||||||||+|++.
T Consensus 171 ~~~~v~i~GS~RRgket~gDiDilit~~~~ 200 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAESSGDMDVLLTHPSF 200 (335)
T ss_dssp TTCEEEECHHHHTTCSEESSEEEEEECTTB
T ss_pred CCcEEEeccccccccCccCCeEEEEECCCc
Confidence 999999999999999999999999999953
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=6.2e-39 Score=339.02 Aligned_cols=188 Identities=29% Similarity=0.384 Sum_probs=172.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCchh
Q 015933 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 281 (398)
Q Consensus 208 ~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (398)
|+|++|+++|++||++|++.|+| ||++||++||++|+++|++|+++.+ +..|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 57999999999999999999998 8999999999999999999999976 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhc---cCchhhhHh----------cHHhHHhhhcCCC
Q 015933 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQRL----------GLKYFDDIKTRIP 347 (398)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-GirtledL~~~---~~l~~~q~~----------Glk~~ed~~~~i~ 347 (398)
++.+..+++. .+.+|++|+|||||+|.+||.. |++|++||+.+ +.|+++++| ||++|+++.+|||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999987764 6777779999999999999997 99999999853 456655444 7999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEechhhcCCcccCCeeEEEecCCC
Q 015933 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396 (398)
Q Consensus 348 r~ea~~~~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~ 396 (398)
|+||+++.+.|.+.+..+.|...+++||||||||++||||||||+|+++
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~ 208 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREG 208 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCH
Confidence 9999999888888887777777999999999999999999999999975
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=6.3e-37 Score=323.77 Aligned_cols=182 Identities=16% Similarity=0.277 Sum_probs=157.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 015933 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (398)
Q Consensus 207 ~~~N~~ia~~L~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (398)
.++|++|+++|++||++|++.|++ ||++||++||++|+.++.+|+++.+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 456999999999999999999988 8999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc---cCchh--------hhHh--cHHhHHhhhcCCCHHH
Q 015933 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 350 (398)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~---~~l~~--------~q~~--Glk~~ed~~~~i~r~e 350 (398)
.+..+++. .+.+|++|+|||||+|++||+.||+|++||+++ ++|++ .|++ |+++|+++.+||||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988865 667777999999999999999999999999964 57877 6667 8999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEEechhhcCCcccCCeeEEEec
Q 015933 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393 (398)
Q Consensus 351 a~~~~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~ 393 (398)
|+.+.+.|.+.+..+ + +++||||||||++||||||||+|
T Consensus 166 ~~~~~~~i~~~l~~~-~---~~~~Gs~RR~~e~~gDiD~li~~ 204 (578)
T 2w9m_A 166 GLAVAEELAGALTDL-S---PAPAGDVRRGLETVRAAELTVTG 204 (578)
T ss_dssp HHHHHHHHHHHTGGG-C---CEECHHHHHTCSEESSEEEEEES
T ss_pred HHHHHHHHHHHHHhC-C---CEEecccccCCCccCCEEEEEec
Confidence 999988888877654 3 89999999999999999999999
No 7
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.93 E-value=4.7e-26 Score=194.40 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=86.2
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHH--HHHhhh--ccCccc
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQV--SKQHLA--RFKGSV 85 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l--~~~~~~--~~~~~l 85 (398)
.+.+..+|++|+|||++.+||.+|++||+++++++||+|++.++++|||||+++++. +++|+ +...++ ..+++|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 456779999999999999999999999999999999999999999999999988764 67888 666554 136899
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 015933 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 86 V~~~Wl~es~k~g~lv~ee~y~l~ 109 (398)
|+++||+|||++|+|||++.|++.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred eccHHHHHHHhcCCcCCcccceEe
Confidence 999999999999999998665554
No 8
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=182.04 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhc-cCcccc
Q 015933 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLAR-FKGSVI 86 (398)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l~~~~~~~-~~~~lV 86 (398)
+++.+|+++|+||+|||++.+|+.+|+++|+++++++||+|++.++++|||||+++.+. .+++++..++.. .+++||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 45788999999999999999999999999999999999999999999999999986654 456665544433 368999
Q ss_pred ccchHHHHHhcCCCCCcccc-ccccC
Q 015933 87 RYQWLEDSLRLGEKVSEDLY-RIKLD 111 (398)
Q Consensus 87 ~~~Wl~es~k~g~lv~ee~y-~l~~~ 111 (398)
+++||+|||++|++|||++| .|..|
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~~ 117 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSGP 117 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCCS
T ss_pred ecHHHHHHHHcCCccCcccceEeccC
Confidence 99999999999999998655 55443
No 9
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-21 Score=162.98 Aligned_cols=98 Identities=17% Similarity=0.338 Sum_probs=83.7
Q ss_pred CCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcC-Ch--HHHHHHHHHhhhccCccccccc
Q 015933 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD-LE--ALLQQVSKQHLARFKGSVIRYQ 89 (398)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~-~~--~~l~~l~~~~~~~~~~~lV~~~ 89 (398)
..++++|+||++||++.+++..|++++.++++++||+|++.++++|||||+++ .+ ..+++++...++ ..++||+.+
T Consensus 6 ~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~-~~~~iV~~~ 84 (106)
T 2jw5_A 6 EEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLP-PGAQLVKSA 84 (106)
T ss_dssp CCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCC-SSCEEEEHH
T ss_pred ccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccC-CCcEEecCc
Confidence 55789999999999999999999999999999999999999999999999974 32 344555543322 257999999
Q ss_pred hHHHHHhcCCCCCccccccccC
Q 015933 90 WLEDSLRLGEKVSEDLYRIKLD 111 (398)
Q Consensus 90 Wl~es~k~g~lv~ee~y~l~~~ 111 (398)
|++|||++|++|||++|.+.+|
T Consensus 85 Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 85 WLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHHTCSCCCGGGTBCSCC
T ss_pred hHHHHHhcCcccCcccccccCC
Confidence 9999999999999999988764
No 10
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.66 E-value=2.2e-16 Score=136.13 Aligned_cols=95 Identities=23% Similarity=0.357 Sum_probs=76.4
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchH
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl 91 (398)
...+..+|+||+|||.+ ....+++.|+++++++||+|++.+++.|||||+.+....++.... .....++||+++||
T Consensus 34 ~~~~~~lF~g~~i~i~G--~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~--~~~~~~~iV~~~Wv 109 (132)
T 1wf6_A 34 FQAPEDLLDGCRIYLCG--FSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWN--KSAHRPHVVGAKWL 109 (132)
T ss_dssp CCCCTTTTTTCEEEEES--CCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHH--HSCCCCCEEEHHHH
T ss_pred ccccccccCCEEEEEEC--CChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHH--hhCCCCeEechHHH
Confidence 44567899999999984 456788899999999999999999999999999864333222111 11236799999999
Q ss_pred HHHHhcCCCCCcccccccc
Q 015933 92 EDSLRLGEKVSEDLYRIKL 110 (398)
Q Consensus 92 ~es~k~g~lv~ee~y~l~~ 110 (398)
.||+++|++|||+.|.+..
T Consensus 110 ~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 110 LECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHHHHHSSCCCSGGGBCCC
T ss_pred HHHHHcCCcCCHhhccCCC
Confidence 9999999999999997753
No 11
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.64 E-value=4.2e-16 Score=129.81 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=74.0
Q ss_pred CCCCCcEEEEccC-CCCc-hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH-HHHHHHHHhhhccCccccccchHHH
Q 015933 17 GIFAGMRVFLVEK-GVQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA-LLQQVSKQHLARFKGSVIRYQWLED 93 (398)
Q Consensus 17 ~~F~g~~iy~~~~-~~g~-~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~-~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (398)
++|+||+|||... ..|. .|.+.|.++++++||+|.+.++.+|||||+.+... ..+ ++...+++||+++||++
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~-----~A~~~~i~iV~~~Wv~~ 80 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWD-----KAQKRGVKLVSVLWVEK 80 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHH-----HHHHHTCEEECHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHH-----HHhcCCCEEECHHHHHH
Confidence 4999999999654 3453 46678999999999999999999999999976542 221 12223689999999999
Q ss_pred HHhcCCCCCccccccccCC
Q 015933 94 SLRLGEKVSEDLYRIKLDP 112 (398)
Q Consensus 94 s~k~g~lv~ee~y~l~~~~ 112 (398)
|+++|++|||++|.+..++
T Consensus 81 C~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 81 CRTAGAHIDESLFPAANMN 99 (107)
T ss_dssp HHHHTSCCCGGGSBCCCTT
T ss_pred HHHhCccCChhcccCCCCc
Confidence 9999999999999987553
No 12
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.57 E-value=4.5e-15 Score=142.13 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=75.5
Q ss_pred CCCCCCCCCcEEEEcc--------CCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh-H--HHHHHHHHhhhcc
Q 015933 13 LDSNGIFAGMRVFLVE--------KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-A--LLQQVSKQHLARF 81 (398)
Q Consensus 13 ~~~~~~F~g~~iy~~~--------~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~-~--~l~~l~~~~~~~~ 81 (398)
..|.++|+||+|||.. ..+...|+++++++++++||+|++.++++|||||+.+.. + .++.++.. ...
T Consensus 159 ~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~--~~~ 236 (263)
T 3ii6_X 159 CSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRT--FKR 236 (263)
T ss_dssp TCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHT--CSS
T ss_pred CCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhh--cCC
Confidence 4578999999999963 234556889999999999999999999999999997532 2 22333321 123
Q ss_pred CccccccchHHHHHhcCCCCCcccccc
Q 015933 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (398)
Q Consensus 82 ~~~lV~~~Wl~es~k~g~lv~ee~y~l 108 (398)
.++||+++||.+||++|++|||++|.+
T Consensus 237 ~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 237 KFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 689999999999999999999999975
No 13
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=6.5e-15 Score=118.03 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCccccccch
Q 015933 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (398)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls--~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~W 90 (398)
.++..+|+||+|||.+... . .+..|+++++.+||++.+.++ ..+||||+.+..... ... ..+.+||+++|
T Consensus 2 ~~~~~~f~g~~~~i~g~~~-~-~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K----~~~--~~~~~iV~~~W 73 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTK-P-GRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKK----RIE--FANYKVVSPDW 73 (92)
T ss_dssp ----CTTTTCEEEECSCCS-S-CHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHH----HHH--TTTSCEECTHH
T ss_pred CccccccCCEEEEEeCCCC-c-CHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHH----HHH--cCCCCEEcccH
Confidence 3567899999999986222 2 356799999999999999998 899999998765421 111 13689999999
Q ss_pred HHHHHhcCCCCCcccccc
Q 015933 91 LEDSLRLGEKVSEDLYRI 108 (398)
Q Consensus 91 l~es~k~g~lv~ee~y~l 108 (398)
|.||+++|++|||++|.+
T Consensus 74 i~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 74 IVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHcCCcCChhhccc
Confidence 999999999999999986
No 14
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=116.24 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccc
Q 015933 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (398)
Q Consensus 11 ~~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~ 89 (398)
...++..+|+||+|||.+... ..++.|+++++.+||++...++ ..+||||+...+.. +...+. +.+||+++
T Consensus 5 ~~~~~~~lF~g~~~~isg~~~--~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~----k~~~~~--~~~iV~p~ 76 (97)
T 2ebw_A 5 SSGTSSTIFSGVAIYVNGYTD--PSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA----KIKELK--GEKVIRPE 76 (97)
T ss_dssp CCSCCCCTTTTCEEEECSSCS--SCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT----HHHHTS--SSCCBCTH
T ss_pred cCCCCCCCCCCeEEEEeCCCc--ccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH----HHHHhc--CCCEeChH
Confidence 455667899999999975322 3367899999999999988776 68999999875421 111121 67999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 015933 90 WLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 90 Wl~es~k~g~lv~ee~y~l~ 109 (398)
||.||+++|++||+++|.+.
T Consensus 77 Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 77 WIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHHHHHHTSCCCSGGGBSC
T ss_pred HHHHHHHcCCccCchHcEec
Confidence 99999999999999999874
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.49 E-value=2.1e-14 Score=119.09 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 015933 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (398)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (398)
....+|.||+|+|.+. .. ..+..|++++..+||+|...++..|||||+.+... ....+...+...+.+||+.+||.+
T Consensus 11 ~~~~~l~g~~i~isg~-~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~-~~~~K~~~A~~~gi~IV~~~Wl~~ 87 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKK-LS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPN-DTNREYKSVKERGVHIVSEHWLLD 87 (107)
T ss_dssp ---CTTTTCEEEECGG-GG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTT-CCCHHHHHHHHTTCEEECHHHHHH
T ss_pred cccCCCCCeEEEEeCC-Ch-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCC-CCCHHHHHHHHCCCeEecHHHHHH
Confidence 3457999999999754 22 45678999999999999999999999999943211 000111222235789999999999
Q ss_pred HHhcCCCCCccccccccC
Q 015933 94 SLRLGEKVSEDLYRIKLD 111 (398)
Q Consensus 94 s~k~g~lv~ee~y~l~~~ 111 (398)
|+++|++|||++|.+...
T Consensus 88 c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 88 CAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHTSCCCGGGCCTTCC
T ss_pred HHHhCCCCchhhCCCCCC
Confidence 999999999999998653
No 16
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=6e-14 Score=116.98 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (398)
-.+|.||+|+|. ++....+..+.+++..+||++...++..+||||+.+... .+...+..++.+||+.+||.||+
T Consensus 10 ~~~F~g~~i~~s--g~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~----~K~~~a~~~~i~IV~~~Wl~dsi 83 (109)
T 2cou_A 10 VPPFQDCILSFL--GFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTV----KDLPFEPSKKLFVVKQEWFWGSI 83 (109)
T ss_dssp CCTTTTCBEEEE--SSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTC----SSCSSCCCTTSEEECHHHHHHHH
T ss_pred CCcCCCeEEEec--CCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCcc----HHHHHHHHCCCeEecHHHHHHHH
Confidence 358999999996 466666778999999999999999999999999976432 11222334578999999999999
Q ss_pred hcCCCCCccccccc
Q 015933 96 RLGEKVSEDLYRIK 109 (398)
Q Consensus 96 k~g~lv~ee~y~l~ 109 (398)
+.|+++||..|.+.
T Consensus 84 ~~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 84 QMDARAGETMYLYE 97 (109)
T ss_dssp HTTSCCCGGGTBCC
T ss_pred HcCCcCChhccCCC
Confidence 99999999999885
No 17
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=117.30 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=74.3
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchH
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl 91 (398)
..+...+|.||+|+|.+.- ...+..|++++..+||+|...++..+||||+.+.... +...+..++.+||+.+||
T Consensus 16 ~~~~~~~f~g~~i~itG~~--~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~----K~~~A~~~gi~IV~~~Wl 89 (129)
T 2d8m_A 16 PEELGKILQGVVVVLSGFQ--NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP----KYSQVLGLGGRIVRKEWV 89 (129)
T ss_dssp HHHHTTTSTTEEEEEESCC--TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCH----HHHHHHHHTCEEEETHHH
T ss_pred CCCccccCCCeEEEEeCCC--cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCCh----HHHHHHHCCCcEecHHHH
Confidence 3344568999999997542 3345679999999999999999999999999865321 111222347899999999
Q ss_pred HHHHhcCCCCCccccccccC
Q 015933 92 EDSLRLGEKVSEDLYRIKLD 111 (398)
Q Consensus 92 ~es~k~g~lv~ee~y~l~~~ 111 (398)
.+|++++++|||+.|.+..+
T Consensus 90 ~d~~~~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 90 LDCHRMRRRLPSQRYLMAGP 109 (129)
T ss_dssp HHHHHTTSCCCGGGGBCSSS
T ss_pred HHHHHhCCcCChHhcccCCC
Confidence 99999999999999998754
No 18
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=114.09 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHh
Q 015933 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (398)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k 96 (398)
.+|.||+|+|. |+....+..|++++..+||++...++..+||+|+.+.+.. +...+..++.+||+.+||.||++
T Consensus 20 p~F~g~~Ic~s--Gf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~----K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 20 PPFQDCILSFL--GFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK----DLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CTTTTCEECEE--SCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS----SCSSCCCSSCEEEEHHHHHHHHH
T ss_pred CccCCeEEEEe--CCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh----hHHHHHHCCeeEecHHHHHHHHH
Confidence 58999999996 5666677889999999999999999999999999875532 22233345889999999999999
Q ss_pred cCCCCCcccccccc
Q 015933 97 LGEKVSEDLYRIKL 110 (398)
Q Consensus 97 ~g~lv~ee~y~l~~ 110 (398)
.|..+||..|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999964
No 19
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.32 E-value=4e-12 Score=105.10 Aligned_cols=89 Identities=12% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh-HHHHHHHHHhhhccCccccccchHHHHH
Q 015933 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-ALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (398)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~-~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (398)
.+|.||++||.+... ...+..|.+++...||.|.+.++++|||||++... ..++... .......+|+++||.+|+
T Consensus 6 d~F~g~~f~l~~~~p-~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~---~~~p~~~~V~P~WI~~Ci 81 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFP-GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL---MENPSLAFVRPRWIYSCN 81 (104)
T ss_dssp CTTTTCEEEEESCCS-TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHH---TTCTTCEEECHHHHHHHH
T ss_pred hhhCCeEEEEcCCCc-HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHh---hhCCCCeEEccHHHHHHH
Confidence 599999999986432 34556789999999999999999999999998643 3333221 112357899999999999
Q ss_pred hcCCCCCccccccc
Q 015933 96 RLGEKVSEDLYRIK 109 (398)
Q Consensus 96 k~g~lv~ee~y~l~ 109 (398)
+.+++||++.|.+.
T Consensus 82 ~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 82 EKQKLLPHQLYGVV 95 (104)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred hcCccCCcccceec
Confidence 99999999999885
No 20
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.6e-12 Score=123.90 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--H--HHHHHHHHhhhc-------
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--A--LLQQVSKQHLAR------- 80 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~--~--~l~~l~~~~~~~------- 80 (398)
...+..+|+||++||.+. ....++++|+.+++++||+|++.++..+||||+...+ + .+..++.....+
T Consensus 154 ~~~~~~lF~g~~~yl~~~-~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (264)
T 1z56_C 154 RRFPLFLFSNRIAYVPRR-KISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTI 232 (264)
T ss_dssp CCCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSC
T ss_pred ccCchhhhCCeEEEEecC-CCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccccc
Confidence 346788999999999753 2345678899999999999999998777777775332 2 122233222211
Q ss_pred cC-ccccccchHHHHHhcCCCCCcccccc
Q 015933 81 FK-GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (398)
Q Consensus 81 ~~-~~lV~~~Wl~es~k~g~lv~ee~y~l 108 (398)
.. ++||+++||.+||++|++|||+.|.+
T Consensus 233 ~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 233 PKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 12 59999999999999999999999975
No 21
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=100.42 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=66.2
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEcCChHHHHHHHHHhhhc
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEALLQQVSKQHLAR 80 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~-----------ls~~VTHVV~~~~~~~l~~l~~~~~~~ 80 (398)
..++..+|+|+++||.. ...++.|+.+++++||.|... .+..+||+|++.... +. ..
T Consensus 6 ~~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~---~~ 73 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT---SV 73 (100)
T ss_dssp CSCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC---CB
T ss_pred cCchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh---hc
Confidence 45667899999999963 235678999999999999875 257899999975321 11 11
Q ss_pred cCccccccchHHHHHhcCCCCCccccc
Q 015933 81 FKGSVIRYQWLEDSLRLGEKVSEDLYR 107 (398)
Q Consensus 81 ~~~~lV~~~Wl~es~k~g~lv~ee~y~ 107 (398)
.+..+|.++||.||++++++||+++|.
T Consensus 74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 245899999999999999999999984
No 22
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.12 E-value=3.6e-11 Score=110.69 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=67.4
Q ss_pred CcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC--hHHHHHHHHHhhhccCccccccchHHHHHhcC
Q 015933 21 GMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL--EALLQQVSKQHLARFKGSVIRYQWLEDSLRLG 98 (398)
Q Consensus 21 g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~--~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g 98 (398)
+++|.+ +|+...++..+.++++++||.+++.+++.|||||+.+. .+..+.+. +...+.+||+.+||++|+++|
T Consensus 2 ~~vi~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~c~~~~ 76 (210)
T 2nte_A 2 PLVLIG--SGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCML---GILNGCWILKFEWVKACLRRK 76 (210)
T ss_dssp CCEEEE--SSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHH---HHHTTCEEEETHHHHHHHHHT
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHH---HHhcCCEEecHHHHHHHHHcC
Confidence 445555 47888888899999999999999999999999999763 22223222 112478999999999999999
Q ss_pred CCCCccccccc
Q 015933 99 EKVSEDLYRIK 109 (398)
Q Consensus 99 ~lv~ee~y~l~ 109 (398)
++|||++|.+.
T Consensus 77 ~~~~e~~y~~~ 87 (210)
T 2nte_A 77 VCEQEEKYEIP 87 (210)
T ss_dssp SCCCGGGTBCT
T ss_pred CcCChhhccCC
Confidence 99999999985
No 23
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.12 E-value=1.3e-10 Score=92.93 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 015933 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276 (398)
Q Consensus 208 ~~N~~ia~~L~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~t 276 (398)
..|..|++-|+++++.++-. +..++.+|++|+.+|+++|.+|++..|+..|+|||++|+++|.|+|+.
T Consensus 13 ~~N~lf~~wL~e~~~~a~~r-~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 13 CPNPLFVRWLTEWRDEAASR-GRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 35999999999999988844 456788999999999999999999999999999999999999999863
No 24
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.05 E-value=1.1e-10 Score=107.07 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=67.2
Q ss_pred CcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh-----HHHHHHHHHhhhccCccccccchHHHHH
Q 015933 21 GMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-----ALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (398)
Q Consensus 21 g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~-----~~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (398)
++++.+ +++...++..+.++++++||.+.+.+++.|||||+.+.+ +-.+.+. +...+.+||+++||.+|+
T Consensus 4 ~~~~~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~---a~~~g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 4 RMSMVV--SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFL---GIAGGKWVVSYFWVTQSI 78 (214)
T ss_dssp CCEEEE--ESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHH---HHHTTCEEEETHHHHHHH
T ss_pred cEEEEE--CCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHH---HHhcCCEEeCHHHHHHHH
Confidence 455555 478888889999999999999999999999999997642 2222221 122477899999999999
Q ss_pred hcCCCCCccccccc
Q 015933 96 RLGEKVSEDLYRIK 109 (398)
Q Consensus 96 k~g~lv~ee~y~l~ 109 (398)
++|+++||++|.+.
T Consensus 79 ~~~~~~~e~~y~~~ 92 (214)
T 1t15_A 79 KERKMLNEHDFEVR 92 (214)
T ss_dssp HTTSCCCGGGGBCC
T ss_pred HCCCcCChHHeEee
Confidence 99999999999886
No 25
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.04 E-value=2.3e-10 Score=106.23 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhccCccccccchHHHHH
Q 015933 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLARFKGSVIRYQWLEDSL 95 (398)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~--~l~~l~~~~~~~~~~~lV~~~Wl~es~ 95 (398)
-+++++|.+. |+....+..+.++++.+||.+++.++..|||||+...+. ..+..+...+...+.+||+++||.+|+
T Consensus 4 ~~~~~~i~~s--g~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 4 AERDISMVVS--GLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCeEEEEc--CCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 4788888885 677777889999999999999999999999999976421 011122222223477899999999999
Q ss_pred hcCCCCCccccccc
Q 015933 96 RLGEKVSEDLYRIK 109 (398)
Q Consensus 96 k~g~lv~ee~y~l~ 109 (398)
++|++|||+.|.+.
T Consensus 82 ~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 82 QERKLLSVHEFEVK 95 (229)
T ss_dssp TTTSCCCSGGGBCC
T ss_pred HCCCcCChHHeEec
Confidence 99999999999885
No 26
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.04 E-value=2e-10 Score=115.06 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCC--CCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHHH
Q 015933 17 GIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLED 93 (398)
Q Consensus 17 ~~F~g~~iy~~~~~--~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~Wl~e 93 (398)
.+|+||+|+|.+.. .....+..+.+++..+||++...++.+|||||+.+.... +..++... +++||+.+||.+
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~----K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE----KVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH----HHHHHHHSSSCCEEEHHHHHH
T ss_pred hhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch----HHHHHHhcCCCEEEcHHHHHH
Confidence 68999999998642 122234678999999999999999999999999754321 11122233 679999999999
Q ss_pred HHhcCCCCCcccccc
Q 015933 94 SLRLGEKVSEDLYRI 108 (398)
Q Consensus 94 s~k~g~lv~ee~y~l 108 (398)
|++.++.+||++|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999986
No 27
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.02 E-value=3.8e-10 Score=109.82 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (398)
..+|.||+|+|.+ +....++.+++++..+||++.+.++ ..+||||+.+.... +...+..++.+||+.+||.+|
T Consensus 197 ~~~f~g~~i~~tG--~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~----K~~~A~~~gi~IV~~~Wl~ds 270 (298)
T 3olc_X 197 CPIFLGCIICVTG--LCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ----KYECAKRWNVHCVTTQWFFDS 270 (298)
T ss_dssp CCTTTTCEEEECS--CCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH----HHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCeEEEEeC--CCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch----HHHHHHHCCCeEEeHHHHHHH
Confidence 4689999999974 4444667899999999999999998 79999999765422 112223347899999999999
Q ss_pred HhcCCCCCccccccccC
Q 015933 95 LRLGEKVSEDLYRIKLD 111 (398)
Q Consensus 95 ~k~g~lv~ee~y~l~~~ 111 (398)
++.|+++||++|.+..+
T Consensus 271 i~~g~~lde~~Y~l~~~ 287 (298)
T 3olc_X 271 IEKGFCQDESIYKTEPR 287 (298)
T ss_dssp HHHTSCCCGGGSBSCC-
T ss_pred HHCCCCCCchhcCCCCC
Confidence 99999999999999643
No 28
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=98.96 E-value=1.3e-11 Score=110.97 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=47.5
Q ss_pred hcHHhHHhhhcCCCHHHHHHHHHHHHHHhhhcCCCeEEEEechhhcCCcccCCeeEEEecCCC
Q 015933 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396 (398)
Q Consensus 334 ~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~ 396 (398)
+|++++++|.+++.++++.++ . -.||+.+++||||||||++||||||||+|++.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~-------i--k~~g~~v~iaGS~RRgket~gDiDiLit~~~~ 59 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL-------I--KILSKNIVAVGSLRREEKMLNDVDLLIIVPEK 59 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE-------E--EECTTTEEEEEHHHHTCSEECCEEEEEEESSH
T ss_pred hHHHHHHHHHhhhhHHhhccc-------c--cCCCcEEEEeccccCCCCCCCCEEEEEecCCH
Confidence 699999999999998887543 1 15899999999999999999999999999874
No 29
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.96 E-value=7.8e-10 Score=88.40 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=59.8
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls-~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (398)
..+|.||++||... .. +...|.+++...||.|+..++ .+|||||+.+.+ .....+|+++||-+|
T Consensus 14 pdiFsg~~~~l~~~-v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~------------~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 14 LDIFTGVRLYLPPS-TP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK------------NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCSTTCEECCCTT-ST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT------------CTTSEEECHHHHHHH
T ss_pred ChhhcCeEEEccCC-cC--chhhheeeeeecCCEEecccCCCcCeEEecCCCc------------CCCCcEEchHHHHHH
Confidence 47999999999753 33 235799999999999988876 589999976631 235689999999999
Q ss_pred HhcCCCCCc
Q 015933 95 LRLGEKVSE 103 (398)
Q Consensus 95 ~k~g~lv~e 103 (398)
++.|++|++
T Consensus 79 I~k~~Ll~~ 87 (88)
T 3pc7_A 79 IRKRRLVAP 87 (88)
T ss_dssp HHHTSCCSC
T ss_pred HhCCcccCC
Confidence 999999986
No 30
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.92 E-value=1.4e-09 Score=103.84 Aligned_cols=92 Identities=12% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-Cccccccch
Q 015933 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQW 90 (398)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~W 90 (398)
..+...+|+|+++|+.. +.....++-|++++..+||+|...++..+||||+.......+. +... ...||+++|
T Consensus 4 ~~~~s~lF~G~~f~V~s-g~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k~~~-----~~~~g~~~IV~p~W 77 (263)
T 3ii6_X 4 GSKISNIFEDVEFCVMS-GTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKN-----IILSNKHDVVKPAW 77 (263)
T ss_dssp --CCCCTTTTCEEEECC-CC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHHHHH-----HHHSCSCCEECHHH
T ss_pred CCcCcccCCCeEEEEEc-CCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHHHHH-----HHhcCCCCEeehHH
Confidence 45567899999999963 3333446689999999999999888877888888765422121 1122 378999999
Q ss_pred HHHHHhcCCCCCccccccc
Q 015933 91 LEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 91 l~es~k~g~lv~ee~y~l~ 109 (398)
|.||+++|++||.++|.+.
T Consensus 78 v~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 78 LLECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHHHTSCCCCCGGGEE
T ss_pred HHHHHhcCCcCCCCHHHHh
Confidence 9999999999998888665
No 31
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.87 E-value=1.5e-09 Score=110.46 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=68.8
Q ss_pred CCCCCcEEEEccCCCC--chHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHHH
Q 015933 17 GIFAGMRVFLVEKGVQ--NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLED 93 (398)
Q Consensus 17 ~~F~g~~iy~~~~~~g--~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~-~~~lV~~~Wl~e 93 (398)
.+|.||+|.|.+..-. ...+..+..++..+||++...++..|||||+...... +..++... +++||+.+||.+
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~----K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE----KVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCH----HHHHHHHHSSSEEEEHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCH----HHHHHHhcCCCEEEeHHHHHH
Confidence 6899999999864211 1123568999999999999999999999999764321 11122223 579999999999
Q ss_pred HHhcCCCCCcccccc
Q 015933 94 SLRLGEKVSEDLYRI 108 (398)
Q Consensus 94 s~k~g~lv~ee~y~l 108 (398)
|++.++.+||..|.+
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999986
No 32
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.82 E-value=2.7e-09 Score=97.80 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=62.2
Q ss_pred ccCCCCchHHHHHHHHHHhcCC-EEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCccc
Q 015933 27 VEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDL 105 (398)
Q Consensus 27 ~~~~~g~~r~~~l~~li~~~Gg-~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lv~ee~ 105 (398)
+-+++....+..+.+++..+|| .+++.+++.+||||+....+-.+.+. +...+.+||+.+||.+|+++|+.+||++
T Consensus 15 ~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~---ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~ 91 (199)
T 3u3z_A 15 VMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLL---GIARGCWVLSYDWVLWSLELGHWISEEP 91 (199)
T ss_dssp EEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHH---HHHTTCEEEETHHHHHHHHHTSCCCSGG
T ss_pred EEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHH---HHHCCCcEEeHHHHHHHhhCCCCCChhh
Confidence 3357877777789999999876 67788999999999976433222221 2223678999999999999999999999
Q ss_pred cccc
Q 015933 106 YRIK 109 (398)
Q Consensus 106 y~l~ 109 (398)
|.+.
T Consensus 92 y~~~ 95 (199)
T 3u3z_A 92 FELS 95 (199)
T ss_dssp GBCT
T ss_pred cccc
Confidence 9886
No 33
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.79 E-value=4.1e-09 Score=98.07 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=69.1
Q ss_pred CCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 015933 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (398)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (398)
.+.+++|.|. |+.......+.++++.+||.|++.. ..+||+|+....+-.+.+ .+...+.+||+.+||.+|+++
T Consensus 13 ~~~~~~i~~S--G~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l---~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 13 PELTPFVLFT--GFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFL---TAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp GGGCCEEEEC--SCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHH---HHTTTCSEEECHHHHHHHHHH
T ss_pred CCCCeEEEEe--CCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHH---HHHHcCCCEecHHHHHHHHHc
Confidence 4678888886 5766667789999999999999886 889999997654322222 222347899999999999999
Q ss_pred CCCCCccccccc
Q 015933 98 GEKVSEDLYRIK 109 (398)
Q Consensus 98 g~lv~ee~y~l~ 109 (398)
|+.|||+.|.+.
T Consensus 87 ~~~l~e~~y~l~ 98 (219)
T 3sqd_A 87 QKFIDEQNYILR 98 (219)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChHhccCC
Confidence 999999999985
No 34
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.79 E-value=5e-09 Score=96.50 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=61.4
Q ss_pred CCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 015933 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (398)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (398)
...+++|.|. |+... .++++++.+||.+++.+++ +||+|+....+-.+.+. +...+.+||+.+||.+|+++
T Consensus 9 ~~~~~~v~~s--G~~~~---~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 9 ESTAPKVLFT--GVVDA---RGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLC---ALGRGIPILSLDWLHQSRKA 79 (209)
T ss_dssp ---CCEEEEC--SSCCH---HHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHH---HHHHTCCEECTHHHHHHHHH
T ss_pred cCCCcEEEEe--CCCcH---HHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHH---HHhcCCccccHHHHHHHHHc
Confidence 5678888885 45433 2489999999999999875 99999976433222221 11236789999999999999
Q ss_pred CCCCCccccccc
Q 015933 98 GEKVSEDLYRIK 109 (398)
Q Consensus 98 g~lv~ee~y~l~ 109 (398)
|+.|||+.|.+.
T Consensus 80 ~~~l~e~~y~~~ 91 (209)
T 2etx_A 80 GFFLPPDEYVVT 91 (209)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChhhcccc
Confidence 999999999885
No 35
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.77 E-value=9.1e-09 Score=96.75 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCchHHHHHHHHHHhcCCEEEe--ecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 015933 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (398)
Q Consensus 20 ~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~--~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (398)
++.+|.|. ++....+..+.+.+++.||.|++ .++..+||||+....+-.+.+. +-..+.+||+.+||++|+++
T Consensus 8 ~~~~~~~S--g~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~---aia~G~wIvs~~wl~~s~~~ 82 (235)
T 3al2_A 8 KQYIFQLS--SLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLA---SVAAGKWVLHRSYLEACRTA 82 (235)
T ss_dssp CCCEEEEE--SCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHH---HHHTTCEEECTHHHHHHHHH
T ss_pred CCEEEEEc--CCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHH---HHHcCCcCccHHHHHHHHHc
Confidence 45566664 56655666799999999999986 4789999999987654322222 22247899999999999999
Q ss_pred CCCCCccccccc
Q 015933 98 GEKVSEDLYRIK 109 (398)
Q Consensus 98 g~lv~ee~y~l~ 109 (398)
|+.|||+.|.+.
T Consensus 83 g~~l~E~~ye~~ 94 (235)
T 3al2_A 83 GHFVQEEDYEWG 94 (235)
T ss_dssp TSCCCSGGGBTT
T ss_pred CCCCChhceeec
Confidence 999999999986
No 36
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=98.77 E-value=2.2e-10 Score=108.02 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=24.4
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc----------C---CC-HHHHHHHHHH
Q 015933 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT----------R---IP-RHEVEQMERL 357 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~----------~---i~-r~ea~~~~~~ 357 (398)
...|.+|+||||++|++||+.||.|+++|..+ ..|..+.+||.+..+.|.. + ++ +.+|..+.+-
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~ 93 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDED 93 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHH
Confidence 34566999999999999999999999999744 4688999999888888864 3 44 5555554222
Q ss_pred HHHHhhhcCCC-e-EEEEechhhcCC---------cccC-CeeEEE
Q 015933 358 LQKAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI 391 (398)
Q Consensus 358 v~~~~~~~~p~-~-~v~~~Gs~RRgk---------e~~g-DvDiLi 391 (398)
|..... -.|+ + .++++||+||.+ ++++ |+|+++
T Consensus 94 i~~~l~-~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~ 138 (241)
T 1vq8_Y 94 VETELQ-ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKK 138 (241)
T ss_dssp --CCEE-ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCT
T ss_pred HHHHHH-hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhhee
Confidence 332222 2455 4 789999999999 9999 999999
No 37
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.76 E-value=1e-08 Score=97.72 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=70.2
Q ss_pred CCCCCCCCCcEEEEccCCCC---------------------------chHHHHHHHHHHhcCCEEEeecCCC------cc
Q 015933 13 LDSNGIFAGMRVFLVEKGVQ---------------------------NRRLQIWRQKLVQMGATVEEKLSKK------VT 59 (398)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g---------------------------~~r~~~l~~li~~~Gg~V~~~ls~~------VT 59 (398)
+....+|.|+.++|...... ...+..|+++|+.+||.|++++++. +|
T Consensus 10 p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t 89 (259)
T 1kzy_C 10 PLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQC 89 (259)
T ss_dssp CSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEE
T ss_pred CCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCe
Confidence 44567999999999543111 1244679999999999999988754 79
Q ss_pred EEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCccccccc
Q 015933 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 60 HVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lv~ee~y~l~ 109 (398)
|+|+....+-.+.+.. ...+..||+.+||.+|+++|+++|+++|.+.
T Consensus 90 ~LIa~~~~rt~K~l~a---la~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 90 LLIADQHCRTRKYFLC---LASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEESSCCCSHHHHHH---HHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEEcCCCCCcHHHHHH---HhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 9999764432222221 1236799999999999999999999999986
No 38
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.63 E-value=4.6e-08 Score=90.60 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHHhh-hccCccccccc
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQHL-ARFKGSVIRYQ 89 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~-----~VTHVV~~~~~~~l~~l~~~~~-~~~~~~lV~~~ 89 (398)
..+|.|+.|||.+..... .+..|+.+++.+||+|+..+.. +.||+|+.+.+...+......+ ...++++|+.+
T Consensus 115 ~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~ 193 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNM-PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWD 193 (229)
T ss_dssp --CCTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETH
T ss_pred hhhhcCceEEEEecCCCC-CHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehh
Confidence 479999999998653333 3567899999999999998854 3688554332210000111111 12368999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 015933 90 WLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 90 Wl~es~k~g~lv~ee~y~l~ 109 (398)
||.+|+..+++++++.|.+.
T Consensus 194 WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 194 WVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHhcCCcCCccceEcc
Confidence 99999999999999999886
No 39
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.62 E-value=6e-08 Score=94.24 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 015933 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (398)
....|+|++|.+. |+....+..+.+++..+||++.+.++.++||||+.+.... +...+...+.+||+.+||.+|
T Consensus 102 y~~~l~g~~~~~t--G~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~----Ky~~A~~~gi~IV~~~Wl~~c 175 (298)
T 3olc_X 102 YNMVMSDVTISCT--SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSK----KYLVAANLKKPILLPSWIKTL 175 (298)
T ss_dssp CCCTTTTCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSH----HHHHHHHTTCCEECHHHHHHH
T ss_pred cccccCCeEEEeC--CCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCCh----HHHHHHHCCCeEeeHHHHHHH
Confidence 3678999999996 4555567789999999999999999999999999765321 111222347899999999999
Q ss_pred HhcCCCCCcccc
Q 015933 95 LRLGEKVSEDLY 106 (398)
Q Consensus 95 ~k~g~lv~ee~y 106 (398)
|+.|+.++..+|
T Consensus 176 ~~~~~~~~~~~~ 187 (298)
T 3olc_X 176 WEKSQEKKITRY 187 (298)
T ss_dssp HHHHHTTCCSSG
T ss_pred HHcCCcCCcccc
Confidence 999998876554
No 40
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.57 E-value=5.9e-08 Score=91.48 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCCCcEEEEccC-CCCchHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEcCChHHH
Q 015933 18 IFAGMRVFLVEK-GVQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEALL 70 (398)
Q Consensus 18 ~F~g~~iy~~~~-~~g~~r~~~l~~li~~~Gg~V~~~-----l--s~-------------------~VTHVV~~~~~~~l 70 (398)
+|+||+++|... .....+...|+++|..+||+|.+. + .. +.||||+....+-.
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 799999999764 122345567999999999999886 2 11 35999997654322
Q ss_pred HHHHHHhhhccCccccccchHHHHHhcCCCCCcccccccc
Q 015933 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (398)
Q Consensus 71 ~~l~~~~~~~~~~~lV~~~Wl~es~k~g~lv~ee~y~l~~ 110 (398)
+.+. +...+..||+.+||.+|+++|+++|+++|.+..
T Consensus 82 K~~~---ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 82 KYLE---ALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHH---HHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHH---HHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2222 112377999999999999999999999999963
No 41
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.49 E-value=8.7e-08 Score=87.55 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHH-hhhccCcccccc
Q 015933 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQ-HLARFKGSVIRY 88 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~-----~VTHVV~~~~~~~l~~l~~~-~~~~~~~~lV~~ 88 (398)
...+|.|+.+||.+.... ..+..|+.+++.+||+|++.+.. +++|||+.+.+......+.. .....++++|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTN-MPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSS-SCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCC-CCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 457999999999864333 34567899999999999998753 22346554322110000111 112246899999
Q ss_pred chHHHHHhcCCCCCccccccc
Q 015933 89 QWLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 89 ~Wl~es~k~g~lv~ee~y~l~ 109 (398)
+||.||+..++++|++.|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999874
No 42
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.45 E-value=1.7e-07 Score=89.21 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC---------CCccEEEEcCCh-HHHHHHHHHhhhccCcc
Q 015933 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLE-ALLQQVSKQHLARFKGS 84 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls---------~~VTHVV~~~~~-~~l~~l~~~~~~~~~~~ 84 (398)
...+|+|++||+.+...+ ...+++..+++.+||+|+..+. .+.+|||+.+.+ .. ...+ .+...+++
T Consensus 152 ~~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~-~~~~--~a~~~~i~ 227 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPA-SVLK--CAEALQLP 227 (259)
T ss_dssp CCCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCH-HHHH--HHHHHTCC
T ss_pred cCCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChH-HHHH--HHHhcCCC
Confidence 357999999999875333 4567899999999999998763 257777775533 11 1111 22234789
Q ss_pred ccccchHHHHHhcCCCCCcccc
Q 015933 85 VIRYQWLEDSLRLGEKVSEDLY 106 (398)
Q Consensus 85 lV~~~Wl~es~k~g~lv~ee~y 106 (398)
||+.+||.+|+..|+++|++.|
T Consensus 228 iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 228 VVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp EECHHHHHHHHHHTSCCCTTSS
T ss_pred EecHHHHHHHHHhCCcCCCCcC
Confidence 9999999999999999998764
No 43
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.8e-08 Score=94.41 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=62.9
Q ss_pred CCCCCCcEEEEccCCC-----CchHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEcCChHHHHHHHHHhhhccCccc
Q 015933 16 NGIFAGMRVFLVEKGV-----QNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSV 85 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~-----g~~r~~~l~~li~~~Gg~V~~~ls~~-----VTHVV~~~~~~~l~~l~~~~~~~~~~~l 85 (398)
..+|+||++|++.... ....++.|.++++.+||+++...... .||||++..... ...+...+..|
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k-----~~~~~~~~~~v 77 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTE-----CKALIDRGYDI 77 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGG-----GGGGTTTTCCC
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHH-----HHHHHhCCCCE
Confidence 4699999999863211 11234568999999999887543222 478888654321 11222234689
Q ss_pred cccchHHHHHhcCCCCCcccccccc
Q 015933 86 IRYQWLEDSLRLGEKVSEDLYRIKL 110 (398)
Q Consensus 86 V~~~Wl~es~k~g~lv~ee~y~l~~ 110 (398)
|+++||.||+++|++||.++|.+..
T Consensus 78 V~p~Wv~dci~~~~llp~~~y~~~~ 102 (264)
T 1z56_C 78 LHPNWVLDCIAYKRLILIEPNYCFN 102 (264)
T ss_dssp BCSSTTHHHHSSCSCCCCCSCBSCC
T ss_pred EechHHHHHhhcCCCCCCChHHhhc
Confidence 9999999999999999999987653
No 44
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.39 E-value=1.3e-07 Score=88.03 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=60.3
Q ss_pred CCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCC
Q 015933 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGE 99 (398)
Q Consensus 20 ~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es~k~g~ 99 (398)
++++|.|. |+.... ..+.++.+||.|++.++ .+||+|+....+-.+.+. +...+.+||+.+||.+|+++|+
T Consensus 7 ~~~~v~fS--G~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~---Aia~g~~IVs~~Wl~~~~~~~~ 77 (220)
T 3l41_A 7 KRVYITFT--GYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLC---SIPYGPCVVTMDWINSCLKTHE 77 (220)
T ss_dssp CCEEEEEC--SCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHH---HGGGCCEEECHHHHHHHHHHTS
T ss_pred ceEEEEEe--ccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceee---cCCCCCeEEEhHHHHhhhhhhh
Confidence 45566665 443322 28899999999999885 599999976543222222 2234789999999999999999
Q ss_pred CCCccccccc
Q 015933 100 KVSEDLYRIK 109 (398)
Q Consensus 100 lv~ee~y~l~ 109 (398)
.+||+.|.+.
T Consensus 78 ~l~e~~y~l~ 87 (220)
T 3l41_A 78 IVDEEPYLLN 87 (220)
T ss_dssp CCCSGGGBCC
T ss_pred ccccCccccC
Confidence 9999999985
No 45
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.33 E-value=3.7e-07 Score=83.53 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 015933 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (398)
...+|.|+.+|++....... ++.|+.+++.+||+|+..+. ..++ ++.+... ....+..+|+++||.||
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~-~~~i-iI~~~~~---------~~~~~~~~V~p~Wi~Ds 183 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPR-QASI-VIGPYSG---------KKKATVKYLSEKWVLDS 183 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGG-GCSE-EESCCCS---------CCCTTCEEECHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCC-CCEE-EEeCCch---------hccCCCcEEChhHHHHH
Confidence 45899999766665433333 46899999999999999884 3444 4444322 11236689999999999
Q ss_pred HhcCCCCCccccccc
Q 015933 95 LRLGEKVSEDLYRIK 109 (398)
Q Consensus 95 ~k~g~lv~ee~y~l~ 109 (398)
+.+++++|++.|.+.
T Consensus 184 I~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 184 ITQHKVCAPENYLLS 198 (199)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HHcCCcCChHhccCC
Confidence 999999999999874
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.18 E-value=2e-06 Score=81.04 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=61.5
Q ss_pred CCCCCCCcEEEEccCCCCch-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEcCChHHHHHHHHHhhhcc
Q 015933 15 SNGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEALLQQVSKQHLARF 81 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~-----------r~~~l~~li~~~Gg~V--~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~ 81 (398)
.+.+|.|++|||+....... .++.+..+++.+||.+ ++.+....+|+|+.+... .....
T Consensus 148 ~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~--------~~~~~ 219 (241)
T 2vxb_A 148 RKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN--------IVDET 219 (241)
T ss_dssp CCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC--------CCSSC
T ss_pred cCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc--------ccccC
Confidence 36899999999986422211 2578999999999999 555566789999976432 12345
Q ss_pred CccccccchHHHHHhcCCCCCc
Q 015933 82 KGSVIRYQWLEDSLRLGEKVSE 103 (398)
Q Consensus 82 ~~~lV~~~Wl~es~k~g~lv~e 103 (398)
+++||+.+||.+|+..|+++|.
T Consensus 220 ~~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 220 NCPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SSCEECHHHHHHHHHHTSCTTC
T ss_pred CCCEecHHHHHHHHHhceecCC
Confidence 7899999999999999999974
No 47
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.12 E-value=3.5e-06 Score=77.35 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCC--ccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 015933 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (398)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~--VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~es 94 (398)
.+|.|++|||.+.... ....|+.+++.+||+|...+... -+|||+....... ... .....+.++|+.+||.+|
T Consensus 114 ~lF~g~~~~~~~~~~~--~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~-~~~--~~~~~~i~vvs~eWi~~s 188 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQP--PPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFP-HCS--IPLRVGLPLLSPEFLLTG 188 (209)
T ss_dssp CTTTTCEEEECTTCSS--CHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGG-GCH--HHHHHTCCEECTHHHHHH
T ss_pred CCcCCcEEEEeCCCCC--CHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHH-HHH--HHHHCCCeEEcHHHHHHH
Confidence 7999999999754222 24578999999999999887653 3788875432210 011 111236789999999999
Q ss_pred HhcCCCCCcccccccc
Q 015933 95 LRLGEKVSEDLYRIKL 110 (398)
Q Consensus 95 ~k~g~lv~ee~y~l~~ 110 (398)
+..+++ |++.|.+..
T Consensus 189 I~~q~l-d~e~y~l~~ 203 (209)
T 2etx_A 189 VLKQEA-KPEAFVLSP 203 (209)
T ss_dssp HHHTCC-CGGGGBCCT
T ss_pred HHhccc-ChHHheecC
Confidence 999775 999999864
No 48
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.05 E-value=2.6e-06 Score=77.98 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeec-------C----------------CCccEEEEcCChHHHHH
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL-------S----------------KKVTHVLAMDLEALLQQ 72 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~l-------s----------------~~VTHVV~~~~~~~l~~ 72 (398)
..+|.|+.+||.+.. ....++.|+.+++.+||+|+... + ..+||.|+......
T Consensus 102 ~~lF~g~~~~l~~~~-~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~--- 177 (210)
T 2nte_A 102 PKLFDGCYFYLWGTF-KHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN--- 177 (210)
T ss_dssp CCTTTTCEEEECSCC-SSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS---
T ss_pred ccccCceEEEEeccC-CCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc---
Confidence 569999999998642 23446789999999999999632 1 23578776542210
Q ss_pred HHHHhhhccCccccccchHHHHHhcCCCCCcc
Q 015933 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (398)
Q Consensus 73 l~~~~~~~~~~~lV~~~Wl~es~k~g~lv~ee 104 (398)
.........+.++|+.+||.||+..++++|.+
T Consensus 178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred cCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 00001112356899999999999999999975
No 49
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.93 E-value=3.4e-05 Score=63.92 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 015933 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (398)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (398)
.....|.|.+|.|-+.-.... ++-++.++..+||.|..+++..++|||+.+.... -+..++...+++||+.+||.+
T Consensus 28 ~~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~---sK~~kA~~lgI~Ii~E~~f~~ 103 (109)
T 2k6g_A 28 GAENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLLN 103 (109)
T ss_dssp CCTTTTTTCEEEEESBCSSCC-HHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH---HHHHHHHHHTCEEECHHHHHH
T ss_pred CCCCCCCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh---HHHHHHHHcCCeEEeHHHHHH
Confidence 344579999999987532323 4578999999999999999999999999764321 122233345889999999999
Q ss_pred HHhcC
Q 015933 94 SLRLG 98 (398)
Q Consensus 94 s~k~g 98 (398)
.+..+
T Consensus 104 ll~~~ 108 (109)
T 2k6g_A 104 LIRNL 108 (109)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99765
No 50
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.90 E-value=2.7e-05 Score=64.90 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccch-----
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW----- 90 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~W----- 90 (398)
...|.|++|.|.+. +... ++-+++++..+||.|...++..+||||+.+.-. ...-+..++...+++||+.+|
T Consensus 8 ~~~l~G~~~ViTG~-l~~~-R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e-~~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGK-LSRN-KDEVKAMIEKLGGKLTGTANKASLCISTKKEVE-KMNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSC-CSSC-HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHH-HCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEec-CCCC-HHHHHHHHHHCCCEEcCccccCccEEEECCCCC-CCChHHHHHHHCCCcEEeHHHHHHHH
Confidence 45799999999876 3334 467899999999999999999999999973211 001122334456899999999
Q ss_pred -----HHHHHhcCCCCCccc
Q 015933 91 -----LEDSLRLGEKVSEDL 105 (398)
Q Consensus 91 -----l~es~k~g~lv~ee~ 105 (398)
+.+|++.....|++.
T Consensus 85 ~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 85 ASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp SCCSCHHHHHHHTBCSSCCC
T ss_pred hhchhHHHHHHHhcCCCCCC
Confidence 455555555555543
No 51
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.84 E-value=1.2e-05 Score=65.27 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHh
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL 322 (398)
+.++|..|||||+.+|.+|.++.+ +|.+..+++ |.+|+|||++++++|++.|+ +++|
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 356789999999999999999986 488755544 45899999999999999875 4444
No 52
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.84 E-value=2.3e-05 Score=62.95 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=61.1
Q ss_pred CCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 015933 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (398)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~e 93 (398)
++...|.|.+|.|-+.--. .++-++.++..+||.|..+++..+||||+.+... -+..++..++.+||+.+||.+
T Consensus 3 ~~~~~l~G~~~v~TG~l~~--~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g----sK~~kA~~lgI~Ii~E~~f~~ 76 (92)
T 1l7b_A 3 KGGEALKGLTFVITGELSR--PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPG----SKLEKARALGVPTLTEEELYR 76 (92)
T ss_dssp CCCCSSTTCEEECSTTTTS--CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS----TTHHHHHCSSSCCEEHHHHHH
T ss_pred CCCCCcCCcEEEEecCCCC--CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC----hHHHHHHHcCCcEEeHHHHHH
Confidence 3456799999999875333 4567899999999999999999999999976432 122334456899999999999
Q ss_pred HHhc
Q 015933 94 SLRL 97 (398)
Q Consensus 94 s~k~ 97 (398)
++..
T Consensus 77 ~l~~ 80 (92)
T 1l7b_A 77 LLEA 80 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 53
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=6.5e-05 Score=62.51 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCCCCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHH
Q 015933 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (398)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~~~~~l~~l~~~~~~~~~~~lV~~~Wl~ 92 (398)
......|.|.+|.|-+.-.... ++-++.++..+||.|...++..++|||+.+.... -+..++...+++||+.+||.
T Consensus 17 ~~~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~---sKl~KA~~lgI~IisE~~f~ 92 (112)
T 2ebu_A 17 KGAENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLL 92 (112)
T ss_dssp CCCSSSSTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS---HHHHHHHHHTCEEEEHHHHH
T ss_pred CCCCCCcCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh---HHHHHHHHcCCeEEeHHHHH
Confidence 3334579999999987532323 4578999999999999999999999999764320 11122334578999999999
Q ss_pred HHHhc
Q 015933 93 DSLRL 97 (398)
Q Consensus 93 es~k~ 97 (398)
+.+..
T Consensus 93 ~ll~~ 97 (112)
T 2ebu_A 93 NLIRT 97 (112)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99975
No 54
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.65 E-value=4.9e-05 Score=71.17 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecC----CCccEEEEcCChHHHH--HHHHHhhhccCccccccc
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLEALLQ--QVSKQHLARFKGSVIRYQ 89 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls----~~VTHVV~~~~~~~l~--~l~~~~~~~~~~~lV~~~ 89 (398)
..+|.|+.|||... ..+...|+++++.+||+|..... ...||++++-.....+ ......+...++++|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 47999999999864 45677899999999999987643 3479998753221000 011112223468999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 015933 90 WLEDSLRLGEKVSEDLYRIK 109 (398)
Q Consensus 90 Wl~es~k~g~lv~ee~y~l~ 109 (398)
||.+|+-..++.+.+.|.+.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999885
No 55
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.52 E-value=2.4e-05 Score=60.11 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=37.3
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.++|..|||||+++|.+|.++. ++..++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 3679999999999999999864 233445566999999999999875
No 56
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00015 Score=58.30 Aligned_cols=85 Identities=8% Similarity=0.131 Sum_probs=63.7
Q ss_pred CCCCCCCcEEEEccCCC---CchHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHHhhhccCccccccc
Q 015933 15 SNGIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (398)
Q Consensus 15 ~~~~F~g~~iy~~~~~~---g~~r~~~l~~li~~~Gg~V~~~ls~~V--THVV~~~~~~~l~~l~~~~~~~~~~~lV~~~ 89 (398)
....|+|+.+||....- ...-.+.|+++++.+||+|...+-.+. -|.|++.... .....|+..
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHH
Confidence 34679999999975311 123457899999999999999985332 3444544321 145789999
Q ss_pred hHHHHHhcCCCCCccccccccC
Q 015933 90 WLEDSLRLGEKVSEDLYRIKLD 111 (398)
Q Consensus 90 Wl~es~k~g~lv~ee~y~l~~~ 111 (398)
++..|+..+++|+.+.|.+...
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~d 97 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPYD 97 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCSC
T ss_pred HHHHHHhcCceecccccccCch
Confidence 9999999999999999999764
No 57
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.25 E-value=0.00028 Score=57.19 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=38.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
+.++|..|||||+.+|+.|.+ .|.+..+++| .+|+|+|+++..++-.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 457899999999999999988 5666655554 4899999999998865
No 58
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=97.19 E-value=0.00036 Score=59.43 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=38.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
+.+++..|||||++.|++|. ++|-+..+|+| .+|+|||+|+.+.+-+
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILRE 107 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHHH
Confidence 45789999999999999998 57777766655 4899999998777643
No 59
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.90 E-value=0.0013 Score=49.64 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=38.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|.+|||||..++..|.+.+ |.+. .+... ....|..|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~~---~l~~a----~~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSVE---RVFTA----SVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSHH---HHHHC----CHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCHH---HHHhC----CHHHHhcCCCCCHHHHHHHHH
Confidence 358899999999999988854 5544 44322 234567999999999999986
No 60
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.86 E-value=0.00094 Score=51.04 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=39.1
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhHhcHHhHHhhhcC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-GirtledL~~~~~l~~~q~~Glk~~ed~~~~ 345 (398)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.|...
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRPY 72 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHHh
Confidence 4566779999999999999997 8999999874 567888888877654
No 61
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.83 E-value=0.0025 Score=58.75 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeecCC-----------C-c-cEEEEcCChH-HHHHHHHHhhhcc
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----------K-V-THVLAMDLEA-LLQQVSKQHLARF 81 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~-----------~-V-THVV~~~~~~-~l~~l~~~~~~~~ 81 (398)
..+|.|+.||+.+.... . .+.|+.++..+||+|...+.. . . ..||..+.+. ..+.. .+.
T Consensus 120 ~~LF~G~~f~it~~~~~-~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~-----~~~ 192 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICP-S-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREY-----FAR 192 (219)
T ss_dssp SCTTTTEEEEECTTCSS-C-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHH-----HHT
T ss_pred ccccCCcEEEEeCCCCC-C-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHH-----HHC
Confidence 46999999999875333 2 568999999999999988632 1 2 2333333322 11111 123
Q ss_pred CccccccchHHHHHhcCCCCCcccccc
Q 015933 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (398)
Q Consensus 82 ~~~lV~~~Wl~es~k~g~lv~ee~y~l 108 (398)
+..|++.+|+.+|+-..+ +|-+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQT-LDYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHTC-CCTTTSBC
T ss_pred CCcEEeHHHHHHHHHhee-ecchhccc
Confidence 678999999999999754 48787765
No 62
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.79 E-value=0.0031 Score=67.23 Aligned_cols=116 Identities=16% Similarity=0.279 Sum_probs=68.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchhh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~ 331 (398)
++|..|+|+|++.+++|.+-++.-+-..| ...+--| .|+|||+++|+.|.+. +.|++.|.++. .|..+
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 57899999999999999876653222212 2334445 9999999999999986 77899998653 58888
Q ss_pred hHhcHHhHHhhhcCCCHHHHHH-HHHHHHHHh-------------hhcCCCeEEEEechhhc
Q 015933 332 QRLGLKYFDDIKTRIPRHEVEQ-MERLLQKAG-------------EEVLPEVIILCGGSYRR 379 (398)
Q Consensus 332 q~~Glk~~ed~~~~i~r~ea~~-~~~~v~~~~-------------~~~~p~~~v~~~Gs~RR 379 (398)
.++|.+..+.|...+.-++..+ ++.+...-+ ...+.|..++++|.+-.
T Consensus 550 ~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~~~~~~l~G~~~v~TG~l~~ 611 (671)
T 2owo_A 550 PDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQ 611 (671)
T ss_dssp TTCCHHHHHHHHHHHTCHHHHHHHHHHHHHTCBCCCC-------------------------
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHcCCcccccccccccccCCcccCcEEEEcCCCCC
Confidence 8999998888877654333333 233322100 11234567889998843
No 63
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.76 E-value=0.001 Score=60.39 Aligned_cols=45 Identities=31% Similarity=0.398 Sum_probs=37.6
Q ss_pred ccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 015933 249 KIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (398)
Q Consensus 249 ~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (398)
+|+ +.++|..|||||+++|+.|.++-+.|.+..+|+|.+ +|.|||
T Consensus 126 pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg 171 (205)
T 2i5h_A 126 SITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQ 171 (205)
T ss_dssp CBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCC
T ss_pred CccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCC
Confidence 443 568899999999999999999999899998888754 688844
No 64
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.72 E-value=0.00055 Score=55.41 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhHhcHHhHHhhhcCC
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-GirtledL~~~~~l~~~q~~Glk~~ed~~~~i 346 (398)
...+.|+.||||||++|+++.+. +|+|++||.+ ..++|.+.++.+...+
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~~l 72 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILRENL 72 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHHTG
T ss_pred CCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHHHh
Confidence 35667889999999999999997 8999999985 5788888888886544
No 65
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.71 E-value=0.002 Score=68.61 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=67.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhch-hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK-VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTH 330 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~-~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~ 330 (398)
++|..|+|+|++.+++|.+-++. .+. .+ ...+--| .|+|||+++|+.|.+. +.|++.|.++. .|..
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~--------sk~-~~l~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~ 543 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEE--------SKH-RGLERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIE 543 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHH--------GGG-CCHHHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHT
T ss_pred HHHhcccccchhhHHHHHHHHHH--------Hhc-CcHHHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHh
Confidence 57899999999999999865553 222 12 2234445 9999999999999985 77899997653 5778
Q ss_pred hhHhcHHhHHhhhcCCCHHHHHH-HHHHHHHHh--------hhcCCCeEEEEechhh
Q 015933 331 SQRLGLKYFDDIKTRIPRHEVEQ-MERLLQKAG--------EEVLPEVIILCGGSYR 378 (398)
Q Consensus 331 ~q~~Glk~~ed~~~~i~r~ea~~-~~~~v~~~~--------~~~~p~~~v~~~Gs~R 378 (398)
+.++|.+..+.|...+.-++..+ ++.+...-+ ...+.|..++++|.+-
T Consensus 544 I~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~l~G~~~v~TG~l~ 600 (667)
T 1dgs_A 544 VEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESKEEVSDLLSGLTFVLTGELS 600 (667)
T ss_dssp STTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTCCCBCC-------------------
T ss_pred ccCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCccccccccccccCCCEEEEeCCCC
Confidence 88999999988876553333222 233322100 1124566788999884
No 66
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.59 E-value=0.0013 Score=50.54 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|..|||||+..+.+|.+.+ |.+ +.+.+. ..+.|.+|+|||+++|..+++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gsl---~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GGL---QGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SCH---HHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CCH---HHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 358899999999999988764 443 444332 234677999999999999976
No 67
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.50 E-value=0.0024 Score=50.28 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=38.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|.+|||||+..+.+|.+.+ |.+ +.+.+. ..+.|.+|+|||+++|..++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gsl---~~l~~a----~~~eL~~i~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAA----SREDLALCPGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CBH---HHHHHC----CHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhC----CHHHHHhCCCCCHHHHHHHHH
Confidence 457899999999998887753 444 444322 234667999999999999986
No 68
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.42 E-value=0.0019 Score=58.58 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.|.++||||+++|..|-..+....+ .+.+.+ ...+.|++|||||+|||++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l--~~aI~~----~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLL--ARALLE----GDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHH--HHHHHT----TCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHH--HHHHHh----CCHHHHHhCCCCCHHHHHHHHH
Confidence 4778999999999998765433222 223332 3456778999999999999986
No 69
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.37 E-value=0.0038 Score=49.48 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|.+|||||+..+.+|.+.+ |.+ +.+... ..+.|.+|+|||+++|..++.
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs~---~~l~~a----s~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAA----SREDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SSH---HHHHSC----CHHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhC----CHHHHHhCCCCCHHHHHHHHH
Confidence 357899999999999887654 544 444332 235677999999999999986
No 70
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.24 E-value=0.0025 Score=54.26 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCCCHHHhhhccCchhhhHhcHHhHHhh
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-GirtledL~~~~~l~~~q~~Glk~~ed~ 342 (398)
...+.|+++|||||++|+++.+. .|+|+|||.+ ..+||-+.++.|
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~------V~GIg~k~~e~l 105 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQIL 105 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG------CTTCCHHHHHHH
T ss_pred cCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh------CCCCCHHHHHHH
Confidence 35667789999999999999987 8999999986 567886654444
No 71
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.16 E-value=0.0037 Score=49.51 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=39.2
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
...+..|+.|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|.
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I~ 81 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLF 81 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHH
Confidence 346667779999999999999986 34788887543 46667778877766654
No 72
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.11 E-value=0.0032 Score=57.98 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=37.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.|.+++|||+++|..|-..+....+. ..+.+ .-.+.|++|||||+|||+++..
T Consensus 89 ~L~sv~GIGpk~A~~Ils~~~~~~l~--~aI~~----~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 89 TLLSVSGVGPRLAMAALAVHDAPALR--QVLAD----GNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHSCHHHHH--HHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhcCcCCcCHHHHHHHHHhCCHHHHH--HHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 47789999999999987754432221 12222 2245677999999999999985
No 73
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.07 E-value=0.0057 Score=48.10 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
.....|..|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|.
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~ 68 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLF 68 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHH
Confidence 35667779999999999999986 44899887543 46677778877665553
No 74
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.05 E-value=0.0027 Score=58.06 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=38.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.|.++||||+++|..|-..+....+ .+.+.+ ...+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l--~~aI~~----~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQF--VNAVER----EEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHH--HHHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHH--HHHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 4677999999999988765432221 233332 3456778999999999999985
No 75
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.78 E-value=0.0051 Score=46.32 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
....|+.|+|||+++|++|++. +.|+++|..+. .|..+.++|.+..+.|.
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~ 63 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIR 63 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHHH
Confidence 4556779999999999999994 66799987543 46777788877766664
No 76
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=95.76 E-value=0.0057 Score=49.03 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.2
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 296 lf~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 4679999999999999999999999999654
No 77
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.70 E-value=0.0024 Score=49.09 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=38.3
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhhc
Q 015933 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~~ 344 (398)
...|..|+||||++|++|++. +.|+++|..+. .|..+.++|.+..+.|..
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Confidence 344669999999999999997 44899988653 477777888877766643
No 78
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=95.47 E-value=0.026 Score=51.98 Aligned_cols=90 Identities=10% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCCCCCcEEEEccCCCCchHHHHHHHHHHhcCCEEEeec--C--------CCccEEEEcCChHHH-HHHHHHhhhccCcc
Q 015933 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL--S--------KKVTHVLAMDLEALL-QQVSKQHLARFKGS 84 (398)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~l--s--------~~VTHVV~~~~~~~l-~~l~~~~~~~~~~~ 84 (398)
..+|+|+.|||.+.-......+.|+.++..+||+|...- . ++-.+||+.+.+..+ ..++........++
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~ 190 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIF 190 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEE
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEE
Confidence 579999999998653112235689999999999999811 0 122466665444322 21221111123578
Q ss_pred ccccchHHHHHhcCCCCCcccc
Q 015933 85 VIRYQWLEDSLRLGEKVSEDLY 106 (398)
Q Consensus 85 lV~~~Wl~es~k~g~lv~ee~y 106 (398)
||+.+|+.+++=..+ ++.+++
T Consensus 191 i~~~e~ll~~il~q~-l~~~~~ 211 (220)
T 3l41_A 191 LQNYDWLIKTVLRQE-IDVNDR 211 (220)
T ss_dssp EEEHHHHHHHHHHTC-CCTTCC
T ss_pred EechhHHHHHHHHHH-cCcchH
Confidence 999999999998754 444433
No 79
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=95.25 E-value=0.016 Score=52.48 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHhhhccCcCHHHHHHHHHc----CCCCHHHhhh--ccCchhhhHhcHHhHHhhhc
Q 015933 293 TISLFGEVWGIGPATAQKLYEK----GHRTLDDLKN--EDSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~----GirtledL~~--~~~l~~~q~~Glk~~ed~~~ 344 (398)
.+..|..+|||||++|+++.+. .|+|++||.+ .|--....-+|-+.++.+..
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~lk~ 187 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKN 187 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHhhC
Confidence 4556778999999999999862 7999999975 22223344588888888854
No 80
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=95.23 E-value=0.018 Score=60.58 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=65.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--Cchhh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~ 331 (398)
++|.+|+|+|++.+++|.+-++.-+-..| ...|--| .|++||.++|+.|-+ .+.|++.|.++. .|..+
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l--------~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCH--------HHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 68999999999999998876653332222 3355567 999999999999976 466999998653 58889
Q ss_pred hHhcHHhHHhhhcCCC
Q 015933 332 QRLGLKYFDDIKTRIP 347 (398)
Q Consensus 332 q~~Glk~~ed~~~~i~ 347 (398)
.++|.+..+.|..-+.
T Consensus 550 ~giG~~~A~si~~ff~ 565 (586)
T 4glx_A 550 PDVGIVVASHVHNFFA 565 (586)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc
Confidence 9999999998887553
No 81
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=95.18 E-value=0.019 Score=52.55 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=37.9
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.|.+|||||+..|..|.+.. |+ ++.+.+.. .+.|..|+|||+++|+++++
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~----~e~L~~v~GiG~~~a~~i~~ 212 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTAS----KAEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCC----HHHHHHSTTCCHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCC----HHHHhhCCCCCHHHHHHHHH
Confidence 47899999999999988754 44 44443322 34567999999999999986
No 82
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.98 E-value=0.0083 Score=48.07 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=28.9
Q ss_pred HHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
..|+.+|+|||++++.|.+.||.|++||+..|
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 34679999999999999999999999999765
No 83
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=94.97 E-value=0.016 Score=43.90 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=43.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc
Q 015933 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~ 344 (398)
...+|+++.||+...|++|.+.||.|+++|--. ..|..+.+|.-...++|+.
T Consensus 4 ~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 4 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 567899999999999999999999999999843 3477778888777777764
No 84
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=94.96 E-value=0.0075 Score=55.45 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=41.9
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-hhhc--cCchhhhHhcHHhHHhhh
Q 015933 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~-Girtled-L~~~--~~l~~~q~~Glk~~ed~~ 343 (398)
...+++|.+|+|||||+|.++... |..+|.. +... ..|++.+++|.|..+.|.
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi 140 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMV 140 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHH
Confidence 346777779999999999999986 8888874 3322 368999999999888764
No 85
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.018 Score=50.26 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=36.3
Q ss_pred CCCC-CcEEEEccCCCC---c---h----HHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 015933 17 GIFA-GMRVFLVEKGVQ---N---R----RLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (398)
Q Consensus 17 ~~F~-g~~iy~~~~~~g---~---~----r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~ 64 (398)
.+|+ +++|||-..... . . +...|++.+...|++|+.-++.+|||||+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 3587 899999654322 1 1 224566788899999999999999999984
No 86
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.04 Score=47.63 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=38.5
Q ss_pred CC-CCcEEEEccCCCC----------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 015933 18 IF-AGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (398)
Q Consensus 18 ~F-~g~~iy~~~~~~g----------~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~ 65 (398)
+. ++.+|||-..+.. ..+.+.|++.+...||+|++-++.+|||||+.-
T Consensus 20 IM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR 78 (151)
T 3oq0_A 20 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 78 (151)
T ss_dssp -CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESS
T ss_pred HhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 44 8899999765432 235578889999999999999999999999853
No 87
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=94.58 E-value=0.0061 Score=57.17 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (398)
.+|..|||||++.+.+|.+. | +..++.|.+ .....|..|+|||+++|+++++.
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREA---G-FESVEDVRG----ADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp -------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHh----CCHHHHHhccCCCHHHHHHHHHH
Confidence 46899999999999998875 2 233455532 23456679999999999999763
No 88
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=94.58 E-value=0.052 Score=50.41 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=44.9
Q ss_pred hhhcCCCCCCHHHHHHHH---HHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCC
Q 015933 254 DQVKGLPGIGKSMQDHIQ---EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~---Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gir 317 (398)
++|..+ |+|..=++-|. +.+..|.+..++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg 172 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLG 172 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSC
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCC
Confidence 445553 78866444444 4455688866777766555678999999999999999988765443
No 89
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=94.54 E-value=0.013 Score=53.00 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-hhhc--cCchhhhHhcHHhHHhhh
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-Girtled-L~~~--~~l~~~q~~Glk~~ed~~ 343 (398)
..++.|.+|+|||||+|.++.+. |-.++.+ +.++ ..|++.+|+|.|..+.|.
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~ 124 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIA 124 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHH
Confidence 35557779999999999999996 7666654 3333 258888999988777663
No 90
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.54 E-value=0.0075 Score=64.32 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=41.2
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhhc--cCchhhhHhcHHhHHhhhcCC
Q 015933 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~-GirtledL~~~--~~l~~~q~~Glk~~ed~~~~i 346 (398)
+|+|+|+|++.+||+. +|++++||... ..|..+.+||-|..+.|.+.|
T Consensus 450 dI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 450 DVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (671)
T ss_dssp CCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHH
Confidence 9999999999999999 67999999853 457788899999999987543
No 91
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.47 E-value=0.024 Score=59.60 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=41.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (398)
...+|.+|||||.++|.+|.+ . -+..+++|++....+ .+++|+|||+|||+++.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I~ 148 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATIL 148 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHHH
Confidence 457899999999999998875 3 456667776532222 67799999999999994
No 92
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.42 E-value=0.027 Score=41.60 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
..|.+||||||++++.|.+ .+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 3566999999999999997 66799999864
No 93
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.35 E-value=0.043 Score=42.99 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=29.3
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
.......|..||||||++++.|.+ .|.|+++|.++
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred cccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 345667777999999999999997 78899999865
No 94
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=94.30 E-value=0.016 Score=52.88 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-hhhc--cCchhhhHhcHHhHHhh
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-Girtled-L~~~--~~l~~~q~~Glk~~ed~ 342 (398)
..++.|.+|+|||||+|.++... |..+|-+ +.++ ..|++.+|+|.|..+.|
T Consensus 70 ~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 70 TLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 45567779999999999999996 6665543 4333 25788888887776665
No 95
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.29 E-value=0.067 Score=49.52 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCCHHHHHHHH---HHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 261 GIGKSMQDHIQ---EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 261 gIG~~ia~kI~---Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
|++..=++-|. +.+..|.+..++.+..-....+++.|++|+||||+||..+--.++
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~l 160 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSL 160 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 77765444444 444579887777777666667899999999999999999876544
No 96
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.086 Score=44.71 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=38.4
Q ss_pred CCCCcEEEEccCC---CC-------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 015933 18 IFAGMRVFLVEKG---VQ-------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (398)
Q Consensus 18 ~F~g~~iy~~~~~---~g-------~~r~~~l~~li~~~Gg~V~~~ls~~VTHVV~~~ 65 (398)
|=+..+|||-.+. +. ..+.+.|++-+...||.|++-++.+|||||+.-
T Consensus 4 m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR 61 (134)
T 3oq4_A 4 MKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 61 (134)
T ss_dssp CCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESS
T ss_pred ccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 5577899996542 21 136688999999999999999999999999853
No 97
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.17 E-value=0.03 Score=42.32 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=26.6
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 296 lf~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
.+.+++|||+.++.+|-+.||.|++||-..
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 344889999999999999999999999854
No 98
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.15 E-value=0.012 Score=62.83 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=41.1
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhhc--cCchhhhHhcHHhHHhhhcCC
Q 015933 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~-GirtledL~~~--~~l~~~q~~Glk~~ed~~~~i 346 (398)
.|.|+|+|++.+||+. +++|+.||... .+|..+.+||-|..+.|.+.|
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aI 495 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQI 495 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHH
Confidence 8999999999999999 67999999854 357778899999988887543
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=94.14 E-value=0.042 Score=54.97 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=25.6
Q ss_pred HHHhhhccCcCHHHHHHHHHc-CC------CCHHHhhhcc
Q 015933 294 ISLFGEVWGIGPATAQKLYEK-GH------RTLDDLKNED 326 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~-Gi------rtledL~~~~ 326 (398)
..++++|+||||.+|++|.++ |= -|.+||+.+|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedG 506 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDG 506 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTT
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHcc
Confidence 467889999999999999987 52 4666776543
No 100
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=94.12 E-value=0.026 Score=59.22 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=42.3
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHh
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL 322 (398)
...+|.+++|||.++|..|..-|-.-++..|...-.+.. ++++||||+|||+++.. |++..+|+
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~~-~l~~~~~~ 154 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIRE-GLALAQAA 154 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHHH-HHHHHHHh
Confidence 357899999999999998765433334444433221111 67999999999999853 44444444
No 101
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.85 E-value=0.035 Score=40.98 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~l~~ 313 (398)
+.|.+|||||++-+..+.. .-|++..+ ++ ..++.+.+| +|.+. |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~~~i---~~----As~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AA----LSQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSHHHH---HT----CCHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCHHHH---HH----CCHHHHHHH--cCchHHHHHHHH
Confidence 4588999999998877654 34555544 33 235556677 88999 999997
No 102
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=93.23 E-value=0.35 Score=43.84 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=70.8
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCchhhHHHHhhchhHHHHHhhhccCcCHHH
Q 015933 238 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307 (398)
Q Consensus 238 rAa~~l~~l~~~i~s~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 307 (398)
+|..+..+||..+... +++.. |. |+| ..=|+.|.++.+. +.-..++.+....+..+.+.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 3444555555555433 34332 33 433 3456666665541 1112356666666668999999999999999
Q ss_pred HHHHHHc-CCCCHHHhh-hcc-CchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHHhhh
Q 015933 308 AQKLYEK-GHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (398)
Q Consensus 308 A~~l~~~-GirtledL~-~~~-~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~~~~ 364 (398)
|..+-.- |+. +.- -+. -..-+.++|+-. +++...++..+-.+++..+...++.
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~ 185 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASN 185 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHH
Confidence 9998775 762 222 111 123344555432 1255677888888877766665543
No 103
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.07 E-value=0.063 Score=42.93 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHhhhccCcCHHHHHHHHHc-----CCCCHHHhhhccCchhhhHhcHHhHHhhh
Q 015933 294 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~-----GirtledL~~~~~l~~~q~~Glk~~ed~~ 343 (398)
...|..|+|||+++|+++.+. .+.+++||.+ +.++|.+.++.|.
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l~ 87 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESFL 87 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHHH
Confidence 445679999999999999962 4788888743 4567777766664
No 104
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=93.06 E-value=0.073 Score=52.20 Aligned_cols=29 Identities=41% Similarity=0.767 Sum_probs=26.3
Q ss_pred hhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 298 GEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 298 ~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
..|||||++++++|.+.||+|+.||.+..
T Consensus 181 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 209 (356)
T 4dez_A 181 DALWGVGPKTTKKLAAMGITTVADLAVTD 209 (356)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHTSC
T ss_pred HHHcCCchhHHHHHHHcCCCeecccccCC
Confidence 57999999999999999999999998643
No 105
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=92.75 E-value=0.047 Score=45.24 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=38.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
.+..|.++ ||||.++++|.+.||.|+++|.... .|....++|....++|.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi 75 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHH
Confidence 34455455 9999999999999999999998543 47777888866666554
No 106
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.21 E-value=0.021 Score=52.94 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|.+|||||++.++++.+.. |++..+ .+ ...+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i---~~----As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKM---KE----ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHH---Hh----CCHHHHHHc-CCCHHHHHHHHH
Confidence 458999999999999987754 555443 32 245667799 999999999986
No 107
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=92.08 E-value=0.028 Score=59.35 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc--
Q 015933 254 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-- 325 (398)
Q Consensus 254 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~-- 325 (398)
++|..|+|+ |++.++++.+-++.-+-..| ...|--| .|+|||+++|+.|.+ .+.|++.|.++
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l--------~r~L~aL-GIp~VG~~~ak~La~-~Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPL--------WRVLVAL-SIRHVGPTAARALAT-EFGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCCCH--------HHHHHHc-CCCCCCHHHHHHHHH-HcCCHHHHHhCCH
Confidence 567777755 57777777665543222222 2355566 999999999999976 47799999865
Q ss_pred cCchhhhHhcHHhHHhhhcCCCHHHHH
Q 015933 326 DSLTHSQRLGLKYFDDIKTRIPRHEVE 352 (398)
Q Consensus 326 ~~l~~~q~~Glk~~ed~~~~i~r~ea~ 352 (398)
..|..+.++|.+..+.|..-+.-++..
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~n~ 587 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDWHR 587 (615)
T ss_dssp ---------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHHHH
Confidence 368889999999999988777544433
No 108
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=91.98 E-value=0.12 Score=48.42 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=49.4
Q ss_pred HHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCc--cccccchHHHHHhc---CC------CCCcccc
Q 015933 40 RQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKG--SVIRYQWLEDSLRL---GE------KVSEDLY 106 (398)
Q Consensus 40 ~~li~~~Gg~V~~~ls--~~VTHVV~~~~~~~l~~l~~~~~~~~~~--~lV~~~Wl~es~k~---g~------lv~ee~y 106 (398)
.+.++..|-.|++.++ ..++|+++..--+-.+.++. + .+.| ++|+++|+++|++. |+ +++.++|
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~s--L-a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY 116 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKS--L-SFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDY 116 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHH--T-TSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTT
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHH--h-ccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhc
Confidence 4789999999999986 47999999765432222321 1 2344 59999999999999 88 8889999
Q ss_pred ccc
Q 015933 107 RIK 109 (398)
Q Consensus 107 ~l~ 109 (398)
.+.
T Consensus 117 ~L~ 119 (256)
T 3t7k_A 117 EIN 119 (256)
T ss_dssp BCT
T ss_pred cCC
Confidence 975
No 109
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=91.82 E-value=0.12 Score=51.98 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=26.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~ 264 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTF 264 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHS
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhC
Confidence 56899999999999999999999999864
No 110
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.75 E-value=0.093 Score=41.05 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=35.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHHc
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 314 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~l~~~ 314 (398)
..|..|||||++-+..+.. ..|.+..+ ++ ..++.|..| ||.+. |+++|+-
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~i---~~----AS~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AA----LSQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHHH---HH----SCHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHHH---HH----CCHHHHHHH--hCchHHHHHHHHH
Confidence 4588999999998887754 44555544 32 234556677 89999 9999984
No 111
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.59 E-value=0.13 Score=54.76 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=29.9
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhh
Q 015933 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~ 323 (398)
..+...+.|+ +|||||+.+|++||+.|++|++||.
T Consensus 651 gv~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 651 GIKEELLELV-QISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp TCCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 3444456666 9999999999999999999999998
No 112
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=91.56 E-value=0.11 Score=50.96 Aligned_cols=30 Identities=37% Similarity=0.412 Sum_probs=26.7
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
+..+||||++++++|...||+|+.||.+..
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~ 209 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSIE 209 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSSC
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCCC
Confidence 468999999999999989999999998643
No 113
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=91.34 E-value=0.14 Score=52.87 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=26.3
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
+..+||||++++++|.+.||+|+.||...
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~ 345 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYM 345 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTS
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhc
Confidence 45889999999999999999999999864
No 114
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=91.11 E-value=0.36 Score=44.38 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=38.8
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
++|..+ |++..=++.|.+ .+..|.+. ++.+..-....+++.|++|+||||+||..+--.++
T Consensus 104 e~Lr~~-G~~~~KA~~i~~lA~~~~~g~~~-l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~l 167 (225)
T 2yg9_A 104 DDLRGV-GLSWAKVRTVQAAAAAAVSGQID-FAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFAL 167 (225)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSSC-GGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHC-CCcHHHHHHHHHHHHHHHhCCcC-HHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 345443 676544444444 34457653 45555444556788889999999999998876543
No 115
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=90.98 E-value=0.05 Score=57.17 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=41.1
Q ss_pred hhccCcCHHHHHHHHHcCC-CCHHHhhh--ccCchhhhHhcHHhHHhhhcCC
Q 015933 298 GEVWGIGPATAQKLYEKGH-RTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 346 (398)
Q Consensus 298 ~~I~GvGpktA~~l~~~Gi-rtledL~~--~~~l~~~q~~Glk~~ed~~~~i 346 (398)
++|.|+|++++++||+.|+ +++.||.. ...|..+.+||.|..++|...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 3799999999999999975 99999974 3457788899999999987543
No 116
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=90.85 E-value=0.54 Score=44.92 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.9
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 015933 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~G 315 (398)
++|..+ |+|-+ ++-|.+ .+..|.+ .++.+..-....+++.|++++||||+||..+--.+
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~ 231 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFS 231 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 455553 67865 444443 4445654 24555544556688889999999999999877543
No 117
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=90.64 E-value=0.11 Score=50.79 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=26.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
+..+||||++++++|...||+|+.||.+..
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~ 210 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSKN 210 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGSC
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcCC
Confidence 458899999999999888999999998643
No 118
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.55 E-value=0.09 Score=56.11 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=39.0
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
...+.|+ +|||||..+|++||+.|++|+.||.+.. .+..+.++|-+-++++.
T Consensus 643 ~e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~ 696 (720)
T 2zj8_A 643 EELIPLM-QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIF 696 (720)
T ss_dssp GGGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHH
T ss_pred ccchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHH
Confidence 3344455 9999999999999999999999998543 34444667766666654
No 119
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=90.27 E-value=0.17 Score=46.11 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=38.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
...+++.|+|||+++|+.|.+. +.|+++|.++. .|....++|.+..+.|.
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~ 211 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEIK 211 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHHH
Confidence 3445669999999999999996 45688887543 47777788887776664
No 120
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=89.78 E-value=0.12 Score=47.38 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=23.4
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~ 324 (398)
+..+||||++++++|.+.||+|+.||.+
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~ 213 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILS 213 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC---
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHC
Confidence 4688999999999999999999999985
No 121
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=89.66 E-value=0.18 Score=48.86 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCEEEeec-CCCccEEEEcCCh--H-HHHHHHHHhhhccCccccccchHHHHHhc
Q 015933 36 LQIWRQKLVQMGATVEEKL-SKKVTHVLAMDLE--A-LLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (398)
Q Consensus 36 ~~~l~~li~~~Gg~V~~~l-s~~VTHVV~~~~~--~-~l~~l~~~~~~~~~~~lV~~~Wl~es~k~ 97 (398)
+..|++.+.+.|+.++ .+ ++.+||||+.... . -.+.+.. +-+ +.+||+.+||.+..+.
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~A--LI~-gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYA--FLK-KTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHH--HHT-TCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHH--HHC-CCcEecHHHHHHHHHh
Confidence 4459999999999999 76 7889999996321 1 0111111 111 5689999999997543
No 122
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=89.36 E-value=0.33 Score=52.70 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=42.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (398)
+.++|..|||||+..|+.|.++.+ .|.+...++|. +|+|+|+++..++..-
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~------------~V~giG~k~~ekl~~F 557 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELK------------KVSRLGEKTFEQAAGF 557 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG------------GSTTCCHHHHHHHGGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH------------hcCCCCHHHHHHhhhe
Confidence 457899999999999999999975 57777766653 7899999998887763
No 123
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=89.23 E-value=0.39 Score=45.98 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=43.1
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCC
Q 015933 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (398)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gir 317 (398)
+|..+ |++..=++-|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 174 ~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 174 GLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 45444 78887788888888775 3444443334457888899999999999998876665
No 124
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=89.05 E-value=0.13 Score=50.70 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=26.2
Q ss_pred hhccCcCHHHHHHHHHcCCCCHHHhhhcc
Q 015933 298 GEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (398)
Q Consensus 298 ~~I~GvGpktA~~l~~~GirtledL~~~~ 326 (398)
..+||||++++++|.+.||+|+.||.+..
T Consensus 182 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 210 (362)
T 4f4y_A 182 DEIPGIGSVLARRLNELGIQKLRDILSKN 210 (362)
T ss_dssp TTSTTCCSTTHHHHHHTTCCBGGGGTTSC
T ss_pred hhccCCCHHHHHHHHHcCCChHHHHhcCC
Confidence 47899999999999999999999998643
No 125
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=88.93 E-value=0.19 Score=49.78 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=41.8
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhhcC
Q 015933 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTR 345 (398)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~~~ 345 (398)
........+++.+||+|||+.|++|.+ -|-||+.|.++. .|....++|.+....|.+-
T Consensus 307 ~~VsprGyRiLs~IPrl~~~iae~Lv~-~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ireg 366 (377)
T 3c1y_A 307 VLVSARGYRLLKTVARIPLSIGYNVVR-MFKTLDQISKASVEDLKKVEGIGEKRARAISES 366 (377)
T ss_dssp CBCCCCSHHHHHHTSCCCHHHHHHHHH-HHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred cccCchHHHHHhhCCCCCHHHHHHHHH-HhCCHHHHHhCCHHHHHhccCccHHHHHHHHHH
Confidence 334455677888888888888888888 455788777653 4667777887777777643
No 126
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=88.18 E-value=0.28 Score=49.44 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.7
Q ss_pred hhhccCcCHHHHHHHHH--cCCCCHHHhhhc
Q 015933 297 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 325 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~--~GirtledL~~~ 325 (398)
+..+||||++|+++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 56899999999999999 899999999865
No 127
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=87.66 E-value=1.6 Score=42.00 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=25.9
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~ 324 (398)
|.++||||+..++++++.|++|++||..
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4599999999999999999999999985
No 128
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=87.63 E-value=0.11 Score=48.23 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhhc
Q 015933 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~~ 344 (398)
...|..|+|||+++|++|.+. +.|++.|.++. .|... ++|.+..+.|..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp -----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHHH
Confidence 345679999999999999985 67788887653 57778 888887777654
No 129
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=87.54 E-value=0.81 Score=42.22 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=38.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
++|..+ |++..=++.|.++. ..|.+ .++.+..-....+++.|++|+||||+||..+--.++
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~al 159 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSL 159 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 345443 67765455454443 44543 234444333446888889999999999999876543
No 130
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.49 E-value=0.46 Score=50.41 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=32.5
Q ss_pred HHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 285 l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
+....+...+.|+ +|||||..+|++||+.|++|+.||.+.
T Consensus 623 i~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 623 IKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 3344445566666 999999999999999999999999854
No 131
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=86.77 E-value=0.55 Score=43.21 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=32.4
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcH-HhHHhh
Q 015933 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGL-KYFDDI 342 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Gl-k~~ed~ 342 (398)
...|..|+|||+++|+.|.+. +.|++.|.++. .|... +|. +..+.|
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~As~EeL~~V--IG~~~~A~~I 215 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSASLEEIARV--IGSTEIARRV 215 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCHHHHHHH--HTCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhCCHHHHHHH--hChHHHHHHH
Confidence 345679999999999999996 34899988653 24444 555 544444
No 132
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=86.05 E-value=0.93 Score=35.67 Aligned_cols=30 Identities=33% Similarity=0.406 Sum_probs=24.7
Q ss_pred cCCCeEEEEechhhcCCcccC--CeeEEEecC
Q 015933 365 VLPEVIILCGGSYRRGKASCG--DLDVVIMHP 394 (398)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~g--DvDiLit~~ 394 (398)
..+...+.+-||+=||..+-+ ||||+|..+
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~ 45 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSD 45 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECG
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeC
Confidence 355578999999999998765 999998654
No 133
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=86.05 E-value=0.49 Score=43.54 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=36.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCH-HHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~l~~ 313 (398)
..|.+|||||++.++++.+.. |++. .+.+- ..+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F--gSl~---~i~~A----s~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF--GSLE---NIRSA----SLEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSHH---HHHTS----CHHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc--CCHH---HHHhC----CHHHHHHH--hChHHHHHHHHH
Confidence 358999999999999988743 5544 44432 34556688 999 99999986
No 134
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=85.30 E-value=0.57 Score=48.43 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=25.6
Q ss_pred hhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 298 GEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 298 ~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
..|||||++|+++|-..||+|+.||.+.
T Consensus 341 ~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 341 RKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp GGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred hhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 4799999999999999999999999864
No 135
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=85.10 E-value=0.96 Score=33.91 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=38.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
+++..|||||..++.++.| .| +.-+|.+.. .....|..|.|++..+|.++..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~G-i~TvedlA~----~~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RG-VCTLEDLAE----QGIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TT-CCSHHHHHT----SCHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cC-CCcHHHHHc----CCHHHHHHccCCCHHHHHHHHH
Confidence 4688999999999887654 44 345566543 2455666899999999999985
No 136
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=84.89 E-value=0.67 Score=46.98 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=30.3
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhHhcHH
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLK 337 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~~~l~~~q~~Glk 337 (398)
+..|||||++++++|...||+|+.||.... -.-...||.+
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~fG~~ 323 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLLFSET 323 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHHSCHH
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHHhChH
Confidence 458999999999999888999999998642 1123446654
No 137
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=84.77 E-value=0.48 Score=43.21 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.9
Q ss_pred HHHHHhhhccCcCHHHHHHHH
Q 015933 292 RTISLFGEVWGIGPATAQKLY 312 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~ 312 (398)
..++.|.++||||||+|+++-
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 478899999999999999985
No 138
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=84.48 E-value=0.53 Score=47.51 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.8
Q ss_pred hhhccCcCHHHHHH-HHHcCCCCHHHhhhcc
Q 015933 297 FGEVWGIGPATAQK-LYEKGHRTLDDLKNED 326 (398)
Q Consensus 297 f~~I~GvGpktA~~-l~~~GirtledL~~~~ 326 (398)
+..|||||++++++ |...||+|+.||....
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~~ 285 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQFT 285 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGSC
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhCC
Confidence 34889999999887 5667999999998643
No 139
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=84.19 E-value=0.81 Score=44.62 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=36.0
Q ss_pred HHHHhhhccCcCHHHHHHHHHc----CCCCHHHhhhcc------CchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~----GirtledL~~~~------~l~~~q~~Glk~~ed~~ 343 (398)
.+..+++|||||+++|.++.+- -+.-+++|+.+. .|..+.|+|.+....|-
T Consensus 55 ~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 55 SGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred CHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHH
Confidence 3445779999999999998873 457777877542 25666777776666553
No 140
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=84.10 E-value=2.3 Score=41.24 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=26.0
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~ 324 (398)
|.++||||+..++++++.|++|++||.+
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4599999999999999999999999985
No 141
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=83.38 E-value=2.8 Score=33.82 Aligned_cols=46 Identities=30% Similarity=0.539 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCeEEEEechhhcCCc-ccCCeeEEEecCC
Q 015933 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPD 395 (398)
Q Consensus 346 i~r~ea~~~~~~v~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~~ 395 (398)
++..+.+.+..++.+ ..+...+.+-|||=||.. ...||||+|..++
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 344445555555554 234458999999999974 4589999986553
No 142
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=83.23 E-value=0.61 Score=42.95 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.0
Q ss_pred HHHHHhhhccCcCHHHHHHHH
Q 015933 292 RTISLFGEVWGIGPATAQKLY 312 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~ 312 (398)
..++.|.++||||||+|+++-
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHhHCCCCCHHHHHHHH
Confidence 478899999999999999985
No 143
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=82.17 E-value=0.27 Score=51.88 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHhhhccCcCHHHHHHHHHcC-CCCHHHhhh--ccCchhhhHh------cHHhHHhhhcCCCH
Q 015933 295 SLFGEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPR 348 (398)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~G-irtledL~~--~~~l~~~q~~------Glk~~ed~~~~i~r 348 (398)
..| +|-|+|++++.+|++.| |+++.||.. ...|..+.+| |-|..++|...|-.
T Consensus 458 ~am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~ 519 (615)
T 3sgi_A 458 NGL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDK 519 (615)
T ss_dssp ---------------------------------------------------------------
T ss_pred Ccc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHH
Confidence 445 89999999999999997 699999863 3345556655 57888888766644
No 144
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=81.93 E-value=0.66 Score=44.43 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
.|+|||||||.+|.++ +.|||.|...
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 4899999999999996 4589999754
No 145
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=81.64 E-value=1.2 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHhhhccCcCHHHHHHHHH
Q 015933 293 TISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~ 313 (398)
..+.|.+|.|||+++|+.+++
T Consensus 345 S~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 345 SVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CHHHHTTSTTCCHHHHHHHHH
T ss_pred CHHHHHhccCccHHHHHHHHH
Confidence 455667888888888888776
No 146
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=81.62 E-value=0.96 Score=41.33 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 015933 293 TISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (398)
.++.|++++||||+||..+--.
T Consensus 113 ~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 113 NRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 4667779999999999988765
No 147
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=81.52 E-value=2.5 Score=40.77 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCCeEEEEechhhcCCc-ccCCeeEEEecCCC
Q 015933 355 ERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDR 396 (398)
Q Consensus 355 ~~~v~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~~~ 396 (398)
-..|+++.....|++.|.+.||+++|.- -..|||++|..|.+
T Consensus 46 ~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~ 88 (323)
T 3nyb_A 46 ISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELG 88 (323)
T ss_dssp HHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCC
T ss_pred HHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCC
Confidence 3344455555789999999999999976 36899999987753
No 148
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=81.48 E-value=1.7 Score=39.80 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHh-CCchhhHHHHhhchhHHHHHhh-hccCcCHHHHHHHHHc-CC
Q 015933 264 KSMQDHIQEIVTT-GKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GH 316 (398)
Q Consensus 264 ~~ia~kI~Eil~t-G~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~l~~~-Gi 316 (398)
..=|..|.++.+. |. +.++.......+++.|+ +++|||||||..+... |.
T Consensus 100 ~~KA~~I~~~a~~ig~---l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 100 QKRAEFIVENRKLLGK---LKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHHHGGGTTT---HHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3444555554432 32 33444445566899999 9999999999988754 65
No 149
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=81.08 E-value=3.6 Score=33.28 Aligned_cols=40 Identities=18% Similarity=0.428 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcCCCe-EEEEechhhcCCc-ccCCeeEEEecC
Q 015933 354 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHP 394 (398)
Q Consensus 354 ~~~~v~~~~~~~~p~~-~v~~~Gs~RRgke-~~gDvDiLit~~ 394 (398)
+.+++..+... .|++ .+.+-||+=||.. ...||||+|..+
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~ 60 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFK 60 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEES
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEec
Confidence 45666665543 5677 6889999999985 358999998654
No 150
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=80.96 E-value=0.73 Score=45.05 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=21.8
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
+|||||||||.+|.++ +.|||.+...
T Consensus 236 gipGiG~KtA~kll~~-~gsle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Confidence 6899999999999997 2389988753
No 151
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=80.64 E-value=0.47 Score=46.33 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=36.0
Q ss_pred HHHHhhhccCcCHHHHHHHHHc----CCCCHHHhhhcc---C-chhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNED---S-LTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~----GirtledL~~~~---~-l~~~q~~Glk~~ed~~ 343 (398)
.+..+++|||||+++|+++.+- .+..+++|+..- . |+.+.|+|.+....|-
T Consensus 55 ~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 55 SYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 3445779999999999999873 467888885331 1 3466777877777664
No 152
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=80.17 E-value=1 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 015933 293 TISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (398)
+++.|++++||||+||..+--.
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHH
Confidence 5677779999999999987754
No 153
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=79.75 E-value=1.3 Score=49.30 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (398)
..|..|+|||++.|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 458899999999999999999 4 68887666553 67899988866553
No 154
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.61 E-value=1.9 Score=38.15 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCcEEEEccCC-CC-chHHHHHHHHHHhcCCEEEee-cCCCccEEEEcCChH---HHHHHHHHhhhccCccccccchHH
Q 015933 19 FAGMRVFLVEKG-VQ-NRRLQIWRQKLVQMGATVEEK-LSKKVTHVLAMDLEA---LLQQVSKQHLARFKGSVIRYQWLE 92 (398)
Q Consensus 19 F~g~~iy~~~~~-~g-~~r~~~l~~li~~~Gg~V~~~-ls~~VTHVV~~~~~~---~l~~l~~~~~~~~~~~lV~~~Wl~ 92 (398)
+.|+++.+-+-. .. -+.+ .+.+-+.--|++-... +.-+.||.|+.|.+. ....++.+ .....||.++|+-
T Consensus 162 msgitvclgpldplkeisdl-qisqclshigarplqrhvaidtthfvcndldneesneelirak---hnnipivrpewvr 237 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDL-QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK---HNNIPIVRPEWVR 237 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHH-HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH---HTTCCEECTHHHH
T ss_pred ccCceEEecCCChhhhhhhc-cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh---ccCCCccCHHHHH
Confidence 456666664321 11 1233 3466677778876543 456789999976542 11223322 2367899999999
Q ss_pred HHHhcCCCCCcccccccc
Q 015933 93 DSLRLGEKVSEDLYRIKL 110 (398)
Q Consensus 93 es~k~g~lv~ee~y~l~~ 110 (398)
.|--+++.|-...|-+..
T Consensus 238 acevekrivgvrgfylda 255 (290)
T 4gns_A 238 ACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHHTTSCCCSGGGBTTS
T ss_pred HHhhhheeeeeeeEEEcc
Confidence 999999999999988864
No 155
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=78.96 E-value=2.9 Score=41.69 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHhhhcCCCeEEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 357 ~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.|+.+.....|++.|.+.||++.|.-+ ..|||++|..+.
T Consensus 71 ~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~ 110 (405)
T 4e8f_A 71 TLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDS 110 (405)
T ss_dssp HHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecC
Confidence 344445556899999999999999876 789999998765
No 156
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=78.92 E-value=2 Score=39.13 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCchhhHHHHh-hchhHHHHHhh-hccCcCHHHHHHHHHc-CCCCHH--HhhhccCchhhhHhcHHhHH
Q 015933 266 MQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKYFD 340 (398)
Q Consensus 266 ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~l~~~-Girtle--dL~~~~~l~~~q~~Glk~~e 340 (398)
=|..|.++.+-|. -++.+.. .....+.+.|+ ++||||||||.-+-.- |...+. |.- -.+-..++|+-.
T Consensus 96 KA~~I~~~a~~~~--l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~-- 168 (214)
T 3fhf_A 96 RAEYIVLARRFKN--IKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID-- 168 (214)
T ss_dssp HHHHHHHHGGGCC--HHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS--
T ss_pred HHHHHHHHHHhhH--HHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC--
Confidence 3555555554221 2344433 13456888898 9999999999986543 553322 211 122334455422
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhh
Q 015933 341 DIKTRIPRHEVEQMERLLQKAGEE 364 (398)
Q Consensus 341 d~~~~i~r~ea~~~~~~v~~~~~~ 364 (398)
...+.+|...-.+++..+...++.
T Consensus 169 ~~~k~lt~~~y~e~~~~l~~~g~~ 192 (214)
T 3fhf_A 169 EIPKTLSRRKYLEIENILRDIGEE 192 (214)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHH
Confidence 122456666666666666655544
No 157
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=78.14 E-value=2.6 Score=41.47 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHH---HhCC--chhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 261 GIGKSMQDHIQEIV---TTGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 261 gIG~~ia~kI~Eil---~tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
|+|.+ ++-|.++. ..|. --.++.+..-....+++.|++|+||||+||..+--.++
T Consensus 215 Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~al 274 (360)
T 2xhi_A 215 GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMAL 274 (360)
T ss_dssp TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 55654 44454443 3332 12356665444456889999999999999999876533
No 158
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=77.38 E-value=1.1 Score=49.94 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c---CCCCHHHhhhccCchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~---GirtledL~~~~~l~~~q~~Glk~~ed~~ 343 (398)
+..+|..|+||||++|+.+.+ . .|.|.+||.+ ..++|.+.|+...
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~------v~~iG~k~fe~~a 765 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT------HNILHKTIFMNSA 765 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHH------TTSSCHHHHHHHT
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHh------cCCccHHHHHhcc
Confidence 577888999999999999953 2 6799999875 3567777776653
No 159
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=76.87 E-value=0.87 Score=44.88 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=34.1
Q ss_pred hhhccCcCHHHHHHHHHc----CCCCHHHhhhcc------CchhhhHhcHHhHHhh
Q 015933 297 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~----GirtledL~~~~------~l~~~q~~Glk~~ed~ 342 (398)
+++|||||+++|+++.+- -+..+++|+.+. .|..+.|+|.+....|
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l 118 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHH
Confidence 679999999999998863 557888887531 3566677777666655
No 160
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=76.41 E-value=3.7 Score=37.40 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 015933 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (398)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (398)
|+..-..+|..|. .+...+. ..++|..|||||..+|+.|.-+. -|.-. + -....+.+.+.++.|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a-~~~~~----~--~vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHF----P--ILDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCSC----C--CCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh-CCCCc----c--eeCHHHHHHHHHHcCCC
Confidence 6666666776654 3443443 45789999999999999987654 23321 1 13345667776666664
No 161
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=76.18 E-value=1.3 Score=40.33 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 292 RTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
.+++.|++++||||+||..+--.++
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 4677777999999999999887533
No 162
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=76.11 E-value=5.9 Score=37.71 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.7
Q ss_pred HHHhhh-ccCcCHHHHHHHHHc
Q 015933 294 ISLFGE-VWGIGPATAQKLYEK 314 (398)
Q Consensus 294 l~lf~~-I~GvGpktA~~l~~~ 314 (398)
++.|++ ++|||++||..+--.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 555556 999999999987654
No 163
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=75.79 E-value=2 Score=48.74 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (398)
..|.-|+|||+..|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 762 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 762 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHHG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhcc
Confidence 458899999999999999998 4 58887666543 68899998866553
No 164
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=75.71 E-value=1.9 Score=46.78 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=34.3
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c--CCCCHHHhhhccCchhhhHhcHHhHHhhh
Q 015933 293 TISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~--GirtledL~~~~~l~~~q~~Glk~~ed~~ 343 (398)
+..+|..|+||||++|+.+.+ + +|.|.+||.+ ..++|.+.|+.+.
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~------V~giG~k~~ekl~ 555 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK------VSRLGEKTFEQAA 555 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHHG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh------cCCCCHHHHHHhh
Confidence 457888999999999999764 2 7899999975 3456666666554
No 165
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=75.63 E-value=1.5 Score=42.99 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.1
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhh
Q 015933 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~-GirtledL~~ 324 (398)
.|+|||||||.+|.++ |-.||+.+.+
T Consensus 229 gv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 7999999999999998 6678988874
No 166
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=74.92 E-value=1.5 Score=34.86 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=23.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhch
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~ 290 (398)
++.+|+.||+||+.+.+...++ -+.-+++|+.--+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga 36 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGS 36 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCH
Confidence 4678999999999887764432 3445566655333
No 167
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=74.71 E-value=1.2 Score=36.64 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=35.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-------CCCCHHHhhh
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLKN 324 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-------GirtledL~~ 324 (398)
.+++|.++ |||...++|+.+ .|. .-++.+.. -.-+.|..|+|||+.+|.+|.+. ||.|-.|+.+
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e---AG~-~Tve~va~----a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~ 94 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE---AGF-HTVEAVAY----APKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQ 94 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT---TCC-SSGGGBTS----SBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC---------
T ss_pred cHHHHHhc-CCCHHHHHHHHH---cCc-CcHHHHHh----CCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHH
Confidence 45556555 999988877654 443 22333322 23445669999999999999852 6777766653
No 168
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=74.54 E-value=4 Score=48.08 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 45999999999999999999999999853
No 169
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=74.08 E-value=6.9 Score=37.62 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCCeEEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 357 ~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.|+.+.....|+++|.+-|||+-|--+ .+|||++|..|.
T Consensus 43 ~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~ 82 (349)
T 4fh3_A 43 TLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDS 82 (349)
T ss_dssp HHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCT
T ss_pred HHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCC
Confidence 344445557899999999999998755 469999887665
No 170
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=73.97 E-value=1.5 Score=42.50 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=21.6
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
.|+|||||||.+|.++ +.|++.+.+.
T Consensus 239 Gv~GiG~KtA~kLl~~-~gsle~i~~~ 264 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT-YGDIFRALKA 264 (336)
T ss_dssp CCTTCCHHHHHHHHHH-HSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHh
Confidence 6999999999999997 2378888753
No 171
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=73.62 E-value=1.7 Score=42.01 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.4
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhh
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~ 323 (398)
.|+|||||||.+|.++ .|++.+.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHH
Confidence 7999999999999998 8999986
No 172
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=73.52 E-value=1.3 Score=35.12 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=34.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
|+.+|+.||+||+++++...++ -+.-+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5678999999999988765432 34556777665455554444343 554433 55554
No 173
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=73.08 E-value=1.6 Score=49.53 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c---CCCCHHHhhhccCchhhhHhcHHhHHhhhc
Q 015933 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~---GirtledL~~~~~l~~~q~~Glk~~ed~~~ 344 (398)
+..+|..|+||||++|+.+.+ + .+.|.+||.+ ..++|.+.|+....
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~------v~~iG~k~fe~~ag 763 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT------HNILHKTIFMNSAG 763 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHH------TTCSCHHHHHHHGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhh------CCCccHHHHHhccc
Confidence 577888999999999999952 2 6789999875 35677777776543
No 174
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.56 E-value=1.2 Score=43.30 Aligned_cols=45 Identities=29% Similarity=0.345 Sum_probs=32.8
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHH
Q 015933 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFD 340 (398)
Q Consensus 296 lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~e 340 (398)
.+..++||||.++++|-+.||.|++++.... .|....+++....+
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~ 82 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTAL 82 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHH
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHH
Confidence 4567899999999999999999999997432 34444444433333
No 175
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=72.53 E-value=3.9 Score=37.16 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHhc-CCcccc-chhhhcCCCCCCHHHHHHHHHHH
Q 015933 218 GKLINIYRALGED-RRSFSYYKAIPVIEK-LPFKIE-SADQVKGLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 218 ~~la~~~e~~g~~-~r~~aY~rAa~~l~~-l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil 274 (398)
++|.++++-.|-. .|+..-..+|..+.. +...+. ..++|..|||||..+|+.|.-+.
T Consensus 76 e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 76 SEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 3444444333432 266666666666543 333333 46789999999999999987553
No 176
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=72.37 E-value=3 Score=32.77 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=31.8
Q ss_pred CchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 278 ~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~GirtledL~~ 324 (398)
++.++..+-++ |. .=+..+.|+||||..+++|-++||..--.|..
T Consensus 3 ts~Kh~~Fv~E-Pm-geK~V~evpGIG~~~~~~L~~~Gf~kAy~lLG 47 (89)
T 1ci4_A 3 TSQKHRDFVAE-PM-GEKPVGSLAGIGEVLGKKLEERGFDKAYVVLG 47 (89)
T ss_dssp SCHHHHHHHTS-CC-TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccHHHHHHHhC-CC-CCCCcccCCCcCHHHHHHHHHcCccHHHHHHH
Confidence 34455555432 21 22356799999999999999999998777764
No 177
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=72.14 E-value=2.8 Score=37.82 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~ 314 (398)
.+++.|++++||||+||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 35667779999999999988754
No 178
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=71.94 E-value=1.8 Score=39.44 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=27.0
Q ss_pred Cccccch-hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 015933 247 PFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (398)
Q Consensus 247 ~~~i~s~-~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (398)
|.+|..+ +++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 18 ~~~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 18 STSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp CHHHHHHHHHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344443 67899999999999999877754444444444
No 179
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=69.98 E-value=5.2 Score=30.18 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (398)
+++..++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999863
No 180
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=69.91 E-value=1.5 Score=43.24 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.7
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhh
Q 015933 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~-GirtledL~~ 324 (398)
.|+|||||||.+|.++ | |||.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 7889999999999996 5 6666653
No 181
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=69.12 E-value=4.1 Score=38.81 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHh-cCCcccc-chhhhcC-CCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHH
Q 015933 218 GKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIE-SADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294 (398)
Q Consensus 218 ~~la~~~e~~g~~~r~~aY~rAa~~l~-~l~~~i~-s~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l 294 (398)
++|.++.+-.|--.|+..-..+|..|. .+...+. +.++|.. |||||..+|+.|.-+. -|.-. +- ....+.
T Consensus 90 eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~~--VDt~V~ 162 (287)
T 3n5n_X 90 EEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----GV--VDGNVA 162 (287)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----CC--CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----cc--ccHHHH
Confidence 334444333332226666666666654 3443332 4678888 9999999999997543 34421 11 234577
Q ss_pred HHhhhccCcC
Q 015933 295 SLFGEVWGIG 304 (398)
Q Consensus 295 ~lf~~I~GvG 304 (398)
+.+.++.+++
T Consensus 163 Rv~~Rlg~i~ 172 (287)
T 3n5n_X 163 RVLCRVRAIG 172 (287)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhCCCC
Confidence 7777777665
No 182
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=69.05 E-value=2.4 Score=41.94 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=24.4
Q ss_pred HHHHhhh------ccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 293 TISLFGE------VWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 293 ~l~lf~~------I~GvGpktA~~l~~~GirtledL~~ 324 (398)
-+.+|+. |||||||||.+|.++ +.|++.+..
T Consensus 224 d~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~ 260 (379)
T 1ul1_X 224 DLCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVR 260 (379)
T ss_dssp HHHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHT
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHH
Confidence 3445556 999999999999997 248888864
No 183
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=68.70 E-value=2 Score=37.47 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.4
Q ss_pred chhhhcCCCCCCHHHHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil 274 (398)
+.++|.+|||||+.+|+-|.=|.
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHT
T ss_pred ChhhhhcCCCchHHHHHHHHHHH
Confidence 45789999999999999987554
No 184
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=68.62 E-value=5.9 Score=36.14 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHH
Q 015933 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil 274 (398)
|+..-..+|..+. .+...+. ..++|..|||||..+|+.|.-+.
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5555566666654 3444443 45789999999999999988653
No 185
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=68.58 E-value=1.8 Score=42.99 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=32.7
Q ss_pred hhhccCcCHHHHHHHHHc----CCCCHHHhhhcc------CchhhhHhcHHhHHhh
Q 015933 297 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~----GirtledL~~~~------~l~~~q~~Glk~~ed~ 342 (398)
+++|||||+++|+++.+- -+..+++|+.+. .|..+.|+|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999999873 457788887531 2555666666555544
No 186
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=68.55 E-value=8.4 Score=39.18 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=43.5
Q ss_pred hhHhcHHhHHhhhcCCCHHHHH----HHHHHHHHHhhhcCCCeEEEEechh-hcCCc-ccCCeeEEEecCC
Q 015933 331 SQRLGLKYFDDIKTRIPRHEVE----QMERLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPD 395 (398)
Q Consensus 331 ~q~~Glk~~ed~~~~i~r~ea~----~~~~~v~~~~~~~~p~~~v~~~Gs~-RRgke-~~gDvDiLit~~~ 395 (398)
...+|-.-.+...++.+-+++. .+.+-|+.+++...|++.|.+.||| +-|.- -++||||++..++
T Consensus 17 ~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~ 87 (468)
T 2b4v_A 17 YAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDD 87 (468)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCC
Confidence 4456666666655555433332 2333455555567899999999999 66774 5899999997653
No 187
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=68.46 E-value=5.8 Score=31.08 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=30.8
Q ss_pred CCHHHHHH-HHHHHHHHhhhcCCCeEEEEechhhcCCcc-cCCeeEEEecC
Q 015933 346 IPRHEVEQ-MERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHP 394 (398)
Q Consensus 346 i~r~ea~~-~~~~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~ 394 (398)
|.+ +..+ +.+.+..+.... +-..+.+-|||=||..+ ..||||+|..+
T Consensus 4 m~~-~~l~~l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~ 52 (98)
T 1wot_A 4 MDL-ETLRARREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFE 52 (98)
T ss_dssp CCH-HHHHHHHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCC
T ss_pred CCH-HHHHHHHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeC
Confidence 444 4333 456666655443 32368899999999864 58999998543
No 188
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=68.19 E-value=4.6 Score=39.52 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 015933 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (398)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (398)
|+..-.++|..|.. +...+ ...++|..|||||..+|+.|.-+. -|.-. + -....+.+.+.++.|+.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~-~~~~~----~--~vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA-YGVPE----P--AVDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCCC----C--CCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH-CCCCc----c--cccHHHHHHHHHHcCcc
Confidence 66666666766653 33333 346789999999999999998775 33311 1 12234666776666654
No 189
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=68.11 E-value=1.9 Score=32.61 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=35.8
Q ss_pred ccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc
Q 015933 300 VWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 300 I~GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~ 344 (398)
--++.++...-|-+.||.|+.||.+- ..|-++.+||.|..++|.+
T Consensus 13 ~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 13 ELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp GSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 33777888888888899999999853 3577888999998877764
No 190
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=68.05 E-value=6.5 Score=38.05 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=35.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+++++++..+ -+..+.+|.+-.+....+.| |+.+...+|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHhCCCCC
Confidence 577899999888876542 35556666654444455556 67778888875 8854
No 191
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=67.19 E-value=3.8 Score=37.47 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 015933 293 TISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (398)
+++.|++++||||+||..+--.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHHH
Confidence 5677789999999999988764
No 192
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=67.17 E-value=4.3 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.0
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCC
Q 015933 291 VRTISLFGEVWGIGPATAQKLYEKGH 316 (398)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (398)
..+++.|++++||||+||..+--.++
T Consensus 203 ~~~~~~L~~lpGIG~~TA~~ill~~l 228 (282)
T 1mpg_A 203 EQAMKTLQTFPGIGRWTANYFALRGW 228 (282)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 35788888999999999998776433
No 193
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=66.84 E-value=2.8 Score=40.61 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.5
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
.|+|||||||.+|.++. .|++.+...
T Consensus 241 gv~GiG~ktA~kli~~~-gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHS-KDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTC-SSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHc-CCHHHHHcC
Confidence 69999999999999973 588887643
No 194
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=65.72 E-value=4.5 Score=33.23 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=21.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||+.+|..+.+. ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 5556789999999999999987 885
No 195
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=65.23 E-value=6 Score=35.56 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHH
Q 015933 218 GKLINIYRALGED-RRSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 218 ~~la~~~e~~g~~-~r~~aY~rAa~~l~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil 274 (398)
++|.++++-.|=- .|+..-..+|..+. .+...+. ..++|..|||||..+|+.|.=+.
T Consensus 70 ~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 70 EGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 4444444433421 26666666776654 3444443 45789999999999999987554
No 196
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=64.58 E-value=2.7 Score=32.85 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=35.2
Q ss_pred CcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc
Q 015933 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 302 GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~ 344 (398)
++.++...-|-+.||.|+.||... ..|-++.+||-|..++|.+
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 778888888888899999999853 3577888999998877764
No 197
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=64.45 E-value=2.4 Score=32.58 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=35.8
Q ss_pred cCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc
Q 015933 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 301 ~GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~ 344 (398)
-++.++...-|-..||.|+.||... ..|-.+.+||.|..++|.+
T Consensus 21 L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 3777888888888899999999853 3577888999998887764
No 198
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=64.01 E-value=2.5 Score=41.10 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=17.0
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHhhh
Q 015933 299 EVWGIGPATAQKLYEKGHRTLDDLKN 324 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~GirtledL~~ 324 (398)
.|+|||||||.+|.++. .|++.+..
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~ 262 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAME 262 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC-----
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHH
Confidence 68999999999999972 36666653
No 199
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=63.78 E-value=3.1 Score=38.29 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=70.8
Q ss_pred Cccccch-hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH--------HHHHHHc---
Q 015933 247 PFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT--------AQKLYEK--- 314 (398)
Q Consensus 247 ~~~i~s~-~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt--------A~~l~~~--- 314 (398)
+.+|..+ +++..|||||++.|.++.-.|-.-.-..++.|-+.. ..+.+-+..+.=.|--+ +..-.+.
T Consensus 4 ~~~l~~LI~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~La~al-~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~i 82 (228)
T 1vdd_A 4 PPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASAL-LEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTI 82 (228)
T ss_dssp CHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHH-HHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEE
T ss_pred cHHHHHHHHHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCCeE
Confidence 3344443 679999999999999998777544444444443210 01111111111111000 0000000
Q ss_pred -CCCCHHHhh---h-----------ccCchhhhHhcHH--hHHhhhcCC-----------CHHHHHHHHHHHHHHhhhcC
Q 015933 315 -GHRTLDDLK---N-----------EDSLTHSQRLGLK--YFDDIKTRI-----------PRHEVEQMERLLQKAGEEVL 366 (398)
Q Consensus 315 -GirtledL~---~-----------~~~l~~~q~~Glk--~~ed~~~~i-----------~r~ea~~~~~~v~~~~~~~~ 366 (398)
=+.+..||. + .|.|..+.++|.. ..+.+.+|+ |--|-+....+|.++.+.
T Consensus 83 CVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~-- 160 (228)
T 1vdd_A 83 CVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEP-- 160 (228)
T ss_dssp EEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHHHTT--
T ss_pred EEECCHHHHHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHHHHHH--
Confidence 113344443 1 1356677777744 345555665 224455566666665432
Q ss_pred CCeEEEEechhhcCCcccCCeeEE
Q 015933 367 PEVIILCGGSYRRGKASCGDLDVV 390 (398)
Q Consensus 367 p~~~v~~~Gs~RRgke~~gDvDiL 390 (398)
-+++|+- +=+|-+.+||+|++
T Consensus 161 ~~vkVTR---iA~GiPvGgeLEY~ 181 (228)
T 1vdd_A 161 LGAAISR---IAYGVPVGGSLEYT 181 (228)
T ss_dssp SSCEEEE---CCBCBCTTCCGGGS
T ss_pred cCCCEEE---ecccCCCCcceeec
Confidence 2677763 44689999999864
No 200
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=62.78 E-value=3 Score=43.06 Aligned_cols=26 Identities=12% Similarity=0.436 Sum_probs=21.8
Q ss_pred hhhccCcCHHHHHHHHHc-CC---CCHHHh
Q 015933 297 FGEVWGIGPATAQKLYEK-GH---RTLDDL 322 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~-Gi---rtledL 322 (398)
+..+||||++++++|.+. || +|+.+|
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i 338 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHI 338 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhh
Confidence 347999999999999999 99 776444
No 201
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=62.65 E-value=2.5 Score=45.76 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhh
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~ 323 (398)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 457899999999999988999999997
No 202
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=62.44 E-value=4.2 Score=38.49 Aligned_cols=45 Identities=27% Similarity=0.379 Sum_probs=32.2
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHh
Q 015933 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDD 341 (398)
Q Consensus 297 f~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed 341 (398)
+.+++||++.++++|-+.||.|++||.... .|....++..+..++
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~ 51 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAK 51 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHH
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHH
Confidence 447889999999999999999999998542 244444444333333
No 203
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=61.69 E-value=9.4 Score=29.75 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (398)
+++..++|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 57999999999999999999864
No 204
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=61.63 E-value=17 Score=34.24 Aligned_cols=84 Identities=21% Similarity=0.415 Sum_probs=50.2
Q ss_pred HHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CC-CCHHHhhhcc---CchhhhHhcHHhHHhhh
Q 015933 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 269 kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-Gi-rtledL~~~~---~l~~~q~~Glk~~ed~~ 343 (398)
.|+.+.+.|.+++ |..++.... .+..+++-.|||.|||.+|... |- .-+..|.++. +|....+.|-+....+.
T Consensus 387 eiermyeegrlse-eayraavei-qlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslv 464 (519)
T 2csb_A 387 EIERMYEEGRLSE-EAYRAAVEI-QLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLV 464 (519)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHH-HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHS
T ss_pred HHHHHHHcccccH-HHHHHHHHH-HHHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhc
Confidence 3455556677665 334443333 3455679999999999999986 52 2333333332 45666677755544432
Q ss_pred ---------cCCCHHHHHHH
Q 015933 344 ---------TRIPRHEVEQM 354 (398)
Q Consensus 344 ---------~~i~r~ea~~~ 354 (398)
..|.|+.|+.+
T Consensus 465 pgyaslisirgidreraerl 484 (519)
T 2csb_A 465 PGYASLISIRGIDRERAERL 484 (519)
T ss_dssp TTHHHHHTSTTCCHHHHHHH
T ss_pred cchhhheeeccccHHHHHHH
Confidence 45777777653
No 205
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=61.48 E-value=3.5 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.4
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 015933 252 SADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Ei 273 (398)
..++|.+|||||..+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 3467999999999999998644
No 206
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=60.96 E-value=14 Score=34.55 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=33.1
Q ss_pred CHHHHHH-HHHHHHHHhhhcCCCe-EEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 347 PRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 347 ~r~ea~~-~~~~v~~~~~~~~p~~-~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.++++.. +.++++.+... .+++ .+.+-|||=||..+ -.||||+|...+
T Consensus 18 ~~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3444433 56666666543 4565 68899999999865 589999986543
No 207
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=60.56 E-value=4.8 Score=34.56 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||.++|..+.+. ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 4445789999999999999987 884
No 208
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=59.69 E-value=9.2 Score=37.14 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHH-HHHHHHHHhhhcCCCeEEEEechhh-cCCc-ccCCeeEEEecC
Q 015933 348 RHEVEQ-MERLLQKAGEEVLPEVIILCGGSYR-RGKA-SCGDLDVVIMHP 394 (398)
Q Consensus 348 r~ea~~-~~~~v~~~~~~~~p~~~v~~~Gs~R-Rgke-~~gDvDiLit~~ 394 (398)
|.++.+ ++.+|+. ..|+++|.+-|||+ -|-- -.+|||++|..|
T Consensus 49 r~~~~~~l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~ 94 (353)
T 2ikf_A 49 VDATYRLVLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNK 94 (353)
T ss_dssp HHHHHHHHHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECH
T ss_pred HHHHHHHHHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeec
Confidence 444333 4555554 58999999999999 6653 467999998654
No 209
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=59.34 E-value=13 Score=35.99 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=36.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHR 317 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gir 317 (398)
+..|||||+.+++++..+ | +..+.+|.+-.+....+.| |+++...||+. |+.
T Consensus 180 v~~l~GiG~~~~~~L~~~---G-I~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d 233 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM---G-ITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGG 233 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCC
T ss_pred HHHHcCCchhHHHHHHHc---C-CCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCC
Confidence 578999999999987654 3 4555666654455556666 77888888874 764
No 210
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=59.24 E-value=9.9 Score=29.11 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (398)
+++..++|+|++..+.|.+.|..
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 57999999999999999998853
No 211
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=58.64 E-value=10 Score=37.13 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHcCCChhHHHHHHHHHHHhc-CCcc--------c---cchhhhcCCCCCCHHHHHHHHHH
Q 015933 223 IYRALGEDRRSFSYYKAIPVIEK-LPFK--------I---ESADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 223 ~~e~~g~~~r~~aY~rAa~~l~~-l~~~--------i---~s~~~l~~lpgIG~~ia~kI~Ei 273 (398)
.++-.|-.+|+..-..+|..+.. +... + +..++|..|||||..+|+.|.-+
T Consensus 210 ~Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 210 HLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34445555677666667766543 2111 1 22367999999999999998754
No 212
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=58.46 E-value=11 Score=35.72 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=32.7
Q ss_pred cCCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 015933 227 LGEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 227 ~g~~~r~~aY~rAa~~l~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Ei 273 (398)
.|-.+|+..-..+|..+..-...+. ..++|..|||||..+|+-|.-+
T Consensus 175 ~g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 175 CTAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp TTCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3555677777777777765322221 2367999999999999998844
No 213
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=56.78 E-value=11 Score=37.46 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=36.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||.++++++..+ | +..+.+|.+-.+....+.| |.+++..||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999988763 3 4445556553444444555 66788999984 8854
No 214
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=56.64 E-value=3.9 Score=41.05 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-C--CCCHHHhhhccCchhhhHhcHHhHHhh
Q 015933 292 RTISLFGEVWGIGPATAQKLYEK-G--HRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-G--irtledL~~~~~l~~~q~~Glk~~ed~ 342 (398)
+..+.+.+|.||||+.|.++.+. | ++-|..|....--.+..++|.+..+.+
T Consensus 619 p~~k~ll~~~gv~p~la~r~~e~~~~~~~~l~~~~~~~l~~~ve~~g~~laer~ 672 (685)
T 4gfj_A 619 PEFKFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERV 672 (685)
T ss_dssp ------------------------------------------------------
T ss_pred hhHHHhhcccCCCHHHHHHHHHHhCCcHHHHhhCCHHHHHHHHHhhCHHHHHHH
Confidence 45666779999999999999986 4 344444443221234556666555443
No 215
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=56.39 E-value=2.6 Score=40.26 Aligned_cols=75 Identities=11% Similarity=0.293 Sum_probs=44.3
Q ss_pred cccchhhhcCCCCCCHHHHHHHHHHHHhCCc--hhhHHHHhhchhHHHHHhhhc--cCcCHHHHHHHHHc----CCCCHH
Q 015933 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKL--SKLEHFEKDEKVRTISLFGEV--WGIGPATAQKLYEK----GHRTLD 320 (398)
Q Consensus 249 ~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~--~~le~l~~~~~~~~l~lf~~I--~GvGpktA~~l~~~----Girtle 320 (398)
++.+++||..|+|+...+-.++..++.---. ..+ .+-. ....-..+|..+ +|||+..|+++.+. |+.+++
T Consensus 153 ~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~i-NiNT-a~~~~a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~ 230 (298)
T 3ci0_K 153 PLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQI-NINT-LDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVD 230 (298)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCE-ETTT-CCGGGTHHHHHHTC-------CCHHHHTCCTTCCSCHH
T ss_pred CCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcce-eccc-cChhhHHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHH
Confidence 5788899999999999999999888754210 111 1100 000012233455 89999999999972 999999
Q ss_pred Hhhhc
Q 015933 321 DLKNE 325 (398)
Q Consensus 321 dL~~~ 325 (398)
|+.+.
T Consensus 231 ~~~~~ 235 (298)
T 3ci0_K 231 QFLAQ 235 (298)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 99853
No 216
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=56.00 E-value=9.5 Score=34.53 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHHH
Q 015933 232 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 232 r~~aY~rAa~~l~~-l~~----~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (398)
|+..-..+|..+.. +.. ++ ...++|..|||||..+|+.|.-+.
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 55555566655542 221 11 234679999999999999987653
No 217
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=55.74 E-value=25 Score=34.75 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHhhhcCCCeEEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 360 KAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 360 ~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.+.....|++.|.+-||+.-|.-+ .+|||+.|..++
T Consensus 37 ~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~ 73 (384)
T 3hj4_A 37 DIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRN 73 (384)
T ss_dssp HHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTT
T ss_pred HHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCC
Confidence 333446899999999999999765 579999998754
No 218
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=54.88 E-value=8.1 Score=33.32 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||+.+|..+.+. ||.
T Consensus 26 v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 26 IMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred eHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 5566789999999999999987 884
No 219
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.83 E-value=8.4 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||+.+|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 5556789999999999999987 884
No 220
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=52.75 E-value=17 Score=37.31 Aligned_cols=53 Identities=30% Similarity=0.550 Sum_probs=38.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+.+++++..+ | +..+.+|.+-.+....+.| |+++...||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l---G-I~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL---G-IKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc---C-CCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 788999999999988764 3 4556666654444455566 77889999974 8854
No 221
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=52.61 E-value=9.3 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=21.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||..+|..+.+. ||.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid 53 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKID 53 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred EEEeeecccccCHHHHHHHHHHcCCC
Confidence 5556789999999999999987 884
No 222
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=51.75 E-value=6.2 Score=34.25 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=15.9
Q ss_pred HHHhhhccCcCHHHHHHHHH
Q 015933 294 ISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~ 313 (398)
.+.+.++||||+.||..+--
T Consensus 103 ~~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 103 WKYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp CSSGGGSTTCCHHHHHHHHH
T ss_pred hhhhhcCCCchHHHHHHHHH
Confidence 44567999999999998643
No 223
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=51.67 E-value=19 Score=33.72 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHcCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHHHhCC
Q 015933 225 RALGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIVTTGK 278 (398)
Q Consensus 225 e~~g~-~~r~~aY~rAa~~l~~--l~~~i-~s----~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (398)
+-.|- +.|+..-.++|..+.. ++... .+ .++|..|||||..+|+-|.-+- -|.
T Consensus 170 r~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~-lg~ 230 (282)
T 1mpg_A 170 KALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRG-WQA 230 (282)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHH-SCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHh-CCC
Confidence 34455 3577777788877764 43322 22 3679999999999999987543 344
No 224
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=51.30 E-value=14 Score=35.57 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=36.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+.+++++..+ | +..+.+|.+-.+....+.| |+.+...+|+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~---G-i~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL---G-IQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCHHHHHHHTTT---T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred cccccCcCHHHHHHHHHc---C-CccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCC
Confidence 678899999888876542 3 5555666654444455566 67778888875 8854
No 225
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=49.96 E-value=6.2 Score=33.00 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 015933 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gir 317 (398)
+.-.|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4556789999999999999987 884
No 226
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=49.72 E-value=13 Score=33.94 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=17.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 015933 253 ADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (398)
.++|..|||||..+|+.|.=+
T Consensus 149 ~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 149 MESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHH
Confidence 467999999999999988744
No 227
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=49.65 E-value=9.6 Score=34.87 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcC--Ccc-c------cchhhhcCCCCCCHHHHHHHHHH
Q 015933 232 RSFSYYKAIPVIEKL--PFK-I------ESADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 232 r~~aY~rAa~~l~~l--~~~-i------~s~~~l~~lpgIG~~ia~kI~Ei 273 (398)
|+..-..+|..+..- ... + +..++|..|||||..+|+.|.-+
T Consensus 107 KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 107 KIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455555556555431 211 2 22467999999999999988754
No 228
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=48.61 E-value=9.8 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCCHHHhh
Q 015933 305 PATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 305 pktA~~l~~~GirtledL~ 323 (398)
-+.+..|++.||+|++|++
T Consensus 59 ~~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 59 QAILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4678999999999999975
No 229
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.36 E-value=4.1 Score=42.42 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=10.8
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHhhhcc-CchhhhHhcHHhHHhhhcC
Q 015933 299 EVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIKTR 345 (398)
Q Consensus 299 ~I~GvGpktA~~l~~~-GirtledL~~~~-~l~~~q~~Glk~~ed~~~~ 345 (398)
+=+||+++.|.++|+. |-.+++-|+++. +|....++|++..+.|..+
T Consensus 15 ~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia~~ 63 (574)
T 3e1s_A 15 QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQA 63 (574)
T ss_dssp -----------------------------CGGGTSSSCCHHHHHTTC--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHHHH
Confidence 6667777777777776 767776666543 5555566777766666544
No 230
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=48.30 E-value=20 Score=32.98 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.8
Q ss_pred e-EEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 369 V-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 369 ~-~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
+ .+.+-||+=||..+ -.||||+|...+
T Consensus 31 ~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 31 VKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp EEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred eeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 5 68899999999865 479999886544
No 231
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=48.19 E-value=15 Score=35.34 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=13.9
Q ss_pred EEEEechhhcCCcccC--CeeEEEecC
Q 015933 370 IILCGGSYRRGKASCG--DLDVVIMHP 394 (398)
Q Consensus 370 ~v~~~Gs~RRgke~~g--DvDiLit~~ 394 (398)
.+...|||.||--.-| ||||+|--+
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~ 82 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLT 82 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEE
T ss_pred EEEEecCcCCCcccCCCCceeEEEEEC
Confidence 5778999999988865 999988544
No 232
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=47.97 E-value=15 Score=35.81 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=37.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+.+++++..+ | +..+.+|.+-.+....+.| |++...+||+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~---G-I~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL---G-IQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYN 235 (362)
T ss_dssp STTSTTCCSTTHHHHHHT---T-CCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred hhhccCCCHHHHHHHHHc---C-CChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCC
Confidence 678999999999987764 3 4455556554444455666 78889999974 8854
No 233
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=46.73 E-value=17 Score=36.24 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh-chhHHHHHhhhccCcCHHHHHHHHHc--CCCCH
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRTL 319 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~l~~~--Girtl 319 (398)
+..|||||.++++++..-+ .-+..+.+|.+- .+....+.| |+++..++|+. |+..-
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDDE 301 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCCH
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCcc
Confidence 6789999999998887721 123445555543 344455555 66677788875 88753
No 234
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=46.41 E-value=17 Score=36.59 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=22.2
Q ss_pred eEEEEechhhcCCccc--CCeeEEEecCC
Q 015933 369 VIILCGGSYRRGKASC--GDLDVVIMHPD 395 (398)
Q Consensus 369 ~~v~~~Gs~RRgke~~--gDvDiLit~~~ 395 (398)
+.+..+|||.||--.- +||||.|.-|.
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~ 68 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPE 68 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECT
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCC
Confidence 6889999999998887 48888886654
No 235
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=45.49 E-value=19 Score=28.71 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (398)
++|.+++|+|++..+.|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999964
No 236
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=44.08 E-value=22 Score=32.26 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhcCCccccc---------hhhhcCCCCCCHHHHHHHHHH
Q 015933 232 RSFSYYKAIPVIEKLPFKIES---------ADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 232 r~~aY~rAa~~l~~l~~~i~s---------~~~l~~lpgIG~~ia~kI~Ei 273 (398)
|+..-..+|..+..=...+.. .++|..|||||..+|+.|.-+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 555556666666541111111 356999999999999988744
No 237
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=42.60 E-value=11 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 015933 293 TISLFGEVWGIGPATAQKLYEK 314 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (398)
.++.|++++|||++||..+--.
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5667779999999999987754
No 238
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=42.26 E-value=1.2e+02 Score=28.35 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCchhhHHHHhhchhHHH-HHhhhc
Q 015933 236 YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHFEKDEKVRTI-SLFGEV 300 (398)
Q Consensus 236 Y~rAa~~l~~l~~~i~s--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l~~~~~~~~l-~lf~~I 300 (398)
...||.+|..||..+.. +..+..+.+|-+.+.+.|.+.|+. |-...+-++.+......- .+|..+
T Consensus 87 ~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L 166 (279)
T 3pkr_A 87 APNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARI 166 (279)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHH
Confidence 35899999999987665 356788888999999999988874 224455566665555543 466677
Q ss_pred cCcCHHHHHHHHHcCCCCHHHhh
Q 015933 301 WGIGPATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 301 ~GvGpktA~~l~~~GirtledL~ 323 (398)
--.-|..|.++-+ -+-++|||.
T Consensus 167 ~~~dpelAe~Ir~-~MF~FeDl~ 188 (279)
T 3pkr_A 167 ESVDNKLAGAIKE-MMFTFEDIV 188 (279)
T ss_dssp HTTCHHHHHHHHT-TSCCGGGGG
T ss_pred HhhCHHHHHHHHH-hccCHHHHh
Confidence 7778888888743 566777775
No 239
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=42.14 E-value=33 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCCeEEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 366 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.++++|.+.||||-|--. .+|||+++..|.
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~ 122 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPR 122 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECT
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCC
Confidence 467899999999999753 479999987764
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=41.47 E-value=5.5 Score=37.90 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhcc--CchhhhHhcHHhHHhhh
Q 015933 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (398)
Q Consensus 296 lf~~I~GvGpktA~~l~~~GirtledL~~~~--~l~~~q~~Glk~~ed~~ 343 (398)
.+..++||++.++++|-+.|+.|++++.... .|....++.....+++.
T Consensus 13 ~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~ 62 (324)
T 2z43_A 13 TINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKII 62 (324)
T ss_dssp --------------------------------------------------
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHH
Confidence 3447789999999999999999999998542 45555555554444444
No 241
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=41.41 E-value=22 Score=32.28 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCh-hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 015933 228 GEDR-RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 228 g~~~-r~~aY~rAa~~l~~--l~~--~i~s------~~~l~~lpgIG~~ia~kI~Ei 273 (398)
|-.. |+..-..+|..+.+ +|. .+.. .++|..|||||..+|+.|.-+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4443 35555556666653 221 1111 367999999999999988743
No 242
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=39.86 E-value=33 Score=34.33 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=34.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+.+++++..+ | +..+.+|... +....+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l---G-I~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT---T-CCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc---C-CCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999988877543 3 3445555542 33334444 67888888874 8854
No 243
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=39.06 E-value=64 Score=32.66 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCCeEEEEechhhcCCcc-cCCeeEEEecCC
Q 015933 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (398)
Q Consensus 357 ~v~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (398)
.|+++.....|++.|.+-||+.=|--. .+|||++|..++
T Consensus 161 ~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 161 LIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 344455557899999999999987654 679999986543
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=38.85 E-value=59 Score=30.33 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=41.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-------CCCCHHHhh
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 323 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-------GirtledL~ 323 (398)
+++..||||++.++.|..+ .| +.-++.+.... ...+..+.|+..++|.+|.+. |+.|-.++.
T Consensus 3 ~~~~~l~gi~~~~~~kL~~---~g-i~t~~~~~~~~----~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~ 71 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE---AG-YIDFMKIATAT----VGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL 71 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH---HT-CCSHHHHHTCC----HHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH
T ss_pred ccHhhcCCCCHHHHHHHHH---cC-CCcHHHHHhCC----HHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 3678899999999988776 34 44555554332 234558899999998888752 566666664
No 245
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=38.04 E-value=23 Score=33.52 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhH-HHHhh-chhHHHHHhhhcc-C-----cCHHHHHHHHHc
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLE-HFEKD-EKVRTISLFGEVW-G-----IGPATAQKLYEK 314 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le-~l~~~-~~~~~l~lf~~I~-G-----vGpktA~~l~~~ 314 (398)
..|..||||+...|..|.+- -++...|- .++.- .+.....+|.++. | |||..++++|+.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH--YSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH--CSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--CCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 57999999999998888753 34555442 22221 1122333455663 4 999999999974
No 246
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=37.50 E-value=19 Score=32.60 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.2
Q ss_pred hhhhc-CCCCCCHHHHHHHHHHH
Q 015933 253 ADQVK-GLPGIGKSMQDHIQEIV 274 (398)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Eil 274 (398)
.++|. +|||||.++|+.|--+.
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc
Confidence 36788 99999999999986553
No 247
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=36.23 E-value=6.6 Score=31.40 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=36.5
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHhhhc--cCchhhhHhcHHhHHhhhc
Q 015933 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (398)
Q Consensus 296 lf~~I~GvGpktA~~l~~~GirtledL~~~--~~l~~~q~~Glk~~ed~~~ 344 (398)
.+-.--++.++...-|-+.||.|+.||.+. ..|-++..||.|..+.|.+
T Consensus 24 ~~Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 74 (98)
T 1coo_A 24 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 74 (98)
T ss_dssp SBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHH
Confidence 333444677888888888899999999853 3577788899888777654
No 248
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=35.72 E-value=48 Score=34.12 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=23.2
Q ss_pred CeEEEEechhhcCCc-ccCCeeEEEecCC
Q 015933 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPD 395 (398)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~gDvDiLit~~~ 395 (398)
+++|.+.||||-|-- -.+|||+++..|.
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~ 109 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPK 109 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECT
T ss_pred CceEEEecccccCCCCCCCceeEEEecCC
Confidence 789999999999874 3579999987774
No 249
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=35.23 E-value=13 Score=33.76 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=17.1
Q ss_pred hhhc-CCCCCCHHHHHHHHHH
Q 015933 254 DQVK-GLPGIGKSMQDHIQEI 273 (398)
Q Consensus 254 ~~l~-~lpgIG~~ia~kI~Ei 273 (398)
++|. +|||||..+|+.|--+
T Consensus 129 ~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 129 EFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 6788 9999999999988644
No 250
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=34.76 E-value=16 Score=37.60 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=35.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHh------CCchh-----hHHHHhhchhHHHHHhhhccCcC----------HHHHHHHHHc
Q 015933 256 VKGLPGIGKSMQDHIQEIVTT------GKLSK-----LEHFEKDEKVRTISLFGEVWGIG----------PATAQKLYEK 314 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~t------G~~~~-----le~l~~~~~~~~l~lf~~I~GvG----------pktA~~l~~~ 314 (398)
+..|+|||.++++++..++-- |.+.. +..|..- -...|.+.+|-+ .+++.+||+.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~----~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~ 384 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEF----LDAKVKQSDYDRSTSNIDPLKTADLAEKLFKL 384 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHH----HHHHHHSTTCC---CCCCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhc----CHHHHHHhcCccccccccchhhhHHHHHHHHH
Confidence 567899999999999998522 22222 1333321 123344555531 2788989885
Q ss_pred --CCCC
Q 015933 315 --GHRT 318 (398)
Q Consensus 315 --Girt 318 (398)
|+..
T Consensus 385 arGid~ 390 (520)
T 3mfi_A 385 SRGRYG 390 (520)
T ss_dssp TTTCCC
T ss_pred hCCCCC
Confidence 8854
No 251
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=33.88 E-value=19 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=32.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH-----HhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
.++..|||||+..+.++.| .|--.-+.-| ..........-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3589999999999998877 4432222111 0111222333444555666666665554
No 252
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=33.32 E-value=24 Score=27.33 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=17.2
Q ss_pred HHHHhhhccCcCHHHHHHHHH
Q 015933 293 TISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~ 313 (398)
.-.....++|||++++.+|-+
T Consensus 56 s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHH
Confidence 455556999999999999875
No 253
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=32.23 E-value=20 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCCHHHhh
Q 015933 305 PATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 305 pktA~~l~~~GirtledL~ 323 (398)
-+.+..|++.|++|++|++
T Consensus 64 ~~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 64 NAILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4567899999999999985
No 254
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=31.84 E-value=58 Score=32.38 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=33.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|+|||.++..++-+-+ | +..+.+|.+-.+....+.| |++++..||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999998877643333 2 2333344443333444555 68899999974 8853
No 255
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=30.17 E-value=1.2e+02 Score=28.06 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=53.7
Q ss_pred CCCCCCCCc---EEEEccCCCCchHHHHHHHHHHhcCCEEEeecCC--------------------CccEEEEcCChHHH
Q 015933 14 DSNGIFAGM---RVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK--------------------KVTHVLAMDLEALL 70 (398)
Q Consensus 14 ~~~~~F~g~---~iy~~~~~~g~~r~~~l~~li~~~Gg~V~~~ls~--------------------~VTHVV~~~~~~~l 70 (398)
.++.+|+++ .|++++.=-|.. +.++..+..||+.=+..+.. ...+|+..+.....
T Consensus 131 ~~gkLf~~~~I~ciNls~dI~GG~--e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~ 208 (256)
T 3t7k_A 131 LPTKVFERANIRCINLVNDIPGGV--DTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQV 208 (256)
T ss_dssp SSSCHHHHTTCCEEEEETTCTTCH--HHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHH
T ss_pred cccccccCCcceeeeeccCCCCCH--HHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHH
Confidence 457899999 777787533433 46799999999975554322 24577776654322
Q ss_pred -HHHHHH--hhhccCccccccchHHHHHhcCCC
Q 015933 71 -QQVSKQ--HLARFKGSVIRYQWLEDSLRLGEK 100 (398)
Q Consensus 71 -~~l~~~--~~~~~~~~lV~~~Wl~es~k~g~l 100 (398)
++.+.- .-....+-+|.++|...|+-.-+.
T Consensus 209 k~Fkk~~~~~~~n~~~lvveWdWCVksIF~lev 241 (256)
T 3t7k_A 209 KKFTKLINDRDKNETILIVEWNWCVESIFHLNV 241 (256)
T ss_dssp HHHHHHHHHHSTTSCEEEECHHHHHHHHHTTSC
T ss_pred HHHHHHhhcccccceEEEEEcHHHHHHHhheee
Confidence 211111 101124689999999999988644
No 256
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=29.48 E-value=3e+02 Score=28.54 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
-.|.+|||||...|.++. +.| +..+++|. -.+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 458899999999999864 555 46677777 5566666666 3666666665
No 257
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=29.43 E-value=3.6e+02 Score=25.24 Aligned_cols=52 Identities=4% Similarity=0.141 Sum_probs=32.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (398)
..|.+|||||..+++++. +.| +..+++|..-.+...-.++ |+++..++.+++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~~-i~s~~~l~~~~~~e~~~ll----~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EIN-VETVYDIMALEDEERDEIL----TLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HTT-CCSHHHHHHSCHHHHHHHC----CCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hCC-CCCHHHHhcCCHHHHHhHh----CCCHHHHHHHHH
Confidence 358999999999888765 333 4445555543333333333 777776666665
No 258
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=28.87 E-value=11 Score=39.14 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCC
Q 015933 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318 (398)
Q Consensus 261 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-Girt 318 (398)
||+.+++.+|...+.... ++.+++ .||.. ..|+|||.+||..+-.. |+..
T Consensus 18 g~~~~~a~~i~~~yg~~~---~~~i~~-nPy~l----~~i~gigf~~aD~ia~~~g~~~ 68 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADA---LDRLEK-DLFTL----TEVEGIGFLTADKLWQARGGAL 68 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC-------
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHh-CCccc----CCcCCCCHHHHHHHHHHcCCCC
Confidence 889999999988775544 344454 46643 58999999999999987 8853
No 259
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.82 E-value=5.4 Score=34.12 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHhhhccCcCHHHHHHHHHc-CC
Q 015933 295 SLFGEVWGIGPATAQKLYEK-GH 316 (398)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~-Gi 316 (398)
-.|+.|+|||+.+|.++.+. ||
T Consensus 62 ~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 62 YSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp TGGGGSTTCCSSTTTGGGTTTTC
T ss_pred EeeeeecCccHHHHHHHHHHcCC
Confidence 35689999999999999987 99
No 260
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=26.99 E-value=36 Score=32.11 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=27.6
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCCCCHHHhhhc
Q 015933 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (398)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~GirtledL~~~ 325 (398)
-.+++|++||||++++|..+.+ -+.|+.+|.++
T Consensus 234 ~~~~mL~~IpGVs~~~A~~I~~-~ypTp~~L~~A 266 (311)
T 2ziu_A 234 VFARQLMQISGVSGDKAAAVLE-HYSTVSSLLQA 266 (311)
T ss_dssp HHHHHHTTBTTCCHHHHHHHHH-HCSSHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHH-HCCCHHHHHHH
Confidence 3678888999999999999997 56788888753
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.41 E-value=36 Score=33.61 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=9.9
Q ss_pred CcCHHHHHHHHHcCCCCHHHhh
Q 015933 302 GIGPATAQKLYEKGHRTLDDLK 323 (398)
Q Consensus 302 GvGpktA~~l~~~GirtledL~ 323 (398)
||+|.++++|-+.||.|+++|.
T Consensus 90 gi~~~~~~~L~~ag~~tv~~~~ 111 (400)
T 3lda_A 90 GITMADVKKLRESGLHTAEAVA 111 (400)
T ss_dssp TCCHHHHHHHHHTTCCBHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHH
Confidence 3444444444444444444443
No 262
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=25.95 E-value=9.8 Score=36.19 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=35.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhh-chhHHHHHhhhc-cC-----cCHHHHHHHHHc
Q 015933 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKD-EKVRTISLFGEV-WG-----IGPATAQKLYEK 314 (398)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~-~~~~~l~lf~~I-~G-----vGpktA~~l~~~ 314 (398)
.+|..|||||...|..|.+.. .+...| +.++.. .+.....+|.++ .| |||..++++|+-
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~y--pTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDRY--STPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSSS--CSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHc--CCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 679999999998888877632 233322 222210 111112244445 23 999999999985
No 263
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=24.15 E-value=90 Score=31.83 Aligned_cols=52 Identities=13% Similarity=0.365 Sum_probs=31.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 015933 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (398)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Girt 318 (398)
+..|||||+.+++++..+ | +..+.+|.+. +. .|...+ |+.....||+. |+..
T Consensus 340 V~kl~GIG~~t~~~L~~l---G-I~TigDL~~~-~~----~L~~~f--G~~~~~~l~~~a~Gid~ 393 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RA----LLSLLF--SETSWHYFLHISLGLGS 393 (517)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHHHH-HH----HHHHHS--CHHHHHHHHHHHTTCCC
T ss_pred hhhhccccHHHHHHHHHh---C-CCcHHHHHhh-HH----HHHHHh--ChHHHHHHHHHHcCCCc
Confidence 678999999888877653 3 3444455432 22 222333 66777778764 8754
No 264
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=23.88 E-value=58 Score=24.93 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=36.6
Q ss_pred ccCcCHHHHHHHHHcCCCCHHHhhhccCchhhhHhcHHhHHhhhcCCCHHHHHHHHHHHHHH
Q 015933 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (398)
Q Consensus 300 I~GvGpktA~~l~~~GirtledL~~~~~l~~~q~~Glk~~ed~~~~i~r~ea~~~~~~v~~~ 361 (398)
+||+-+..++.|-..||+|.+|+.....+.-++..|+ +...+.++...+...
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~l----------s~~~v~~l~r~l~~~ 60 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGL----------SYKALVALRRVLLAQ 60 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCC----------CHHHHHHHHHHHHHH
Confidence 4899999999999999999999986654333333343 456666765555443
No 265
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=23.35 E-value=31 Score=32.51 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 015933 253 ADQVKGLPGIGKSMQDHIQEI 273 (398)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (398)
.++|..|||||..+|+-|.-+
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 367999999999999988754
No 266
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.58 E-value=2.7e+02 Score=26.13 Aligned_cols=65 Identities=15% Similarity=0.383 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHH
Q 015933 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (398)
Q Consensus 233 ~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (398)
--||+-|... .+.+|.+-.|+|.++++.+-. .-|.-..+..|... + -++-+.+|.|||....+.|
T Consensus 399 eeayraavei---------qlaeltkkegvgrktaerllr--afgnpervkqlare--f-eieklasvegvgervlrsl 463 (519)
T 2csb_A 399 EEAYRAAVEI---------QLAELTKKEGVGRKTAERLLR--AFGNPERVKQLARE--F-EIEKLASVEGVGERVLRSL 463 (519)
T ss_dssp HHHHHHHHHH---------HHHHHHTSTTCCHHHHHHHHH--HHSSHHHHHHHHHT--T-CHHHHHTSTTCSHHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHhhhcccchhHHHHHHH--HhCCHHHHHHHHHH--H-hHHHHhhccchHHHHHHHh
Confidence 4578766532 145677888999999987532 44666665555432 1 2333346666666655554
No 267
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=21.05 E-value=1.3e+02 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEechh----hcCCcccCCeeEEEe
Q 015933 354 MERLLQKAGEEVLPEVIILCGGSY----RRGKASCGDLDVVIM 392 (398)
Q Consensus 354 ~~~~v~~~~~~~~p~~~v~~~Gs~----RRgke~~gDvDiLit 392 (398)
+..+...+. .-++...++||| +=.-...+||||+|.
T Consensus 22 L~~i~~~L~---~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~ 61 (169)
T 2fcl_A 22 LRXIYDRLX---NEXVNWVVTGSLSFALQGVPVEVHDIDIQTD 61 (169)
T ss_dssp HHHHHHHHT---TSSCCEEEEHHHHHHHTTCCCCCCSEEEEEC
T ss_pred HHHHHHHHH---hcCCCEEEeHHHHHHHcCCCCCCCccEEEec
Confidence 344444432 346778889994 556678999999984
Done!