BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015934
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 164/296 (55%), Gaps = 58/296 (19%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPTCTD 166
+P P+G ++C I R++ TY+L+L +DGK FLLA RK ++ ++
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSKTSN 78
Query: 167 YIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNMKQV 222
Y+IS++ D+S+G +YIG RSN +GTKFT+YD +P A + + + RQ
Sbjct: 79 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ------ 132
Query: 223 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 282
+A + YE NVLG +GPR+M + +P ++ V+ H + L
Sbjct: 133 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPRNEHETLL-- 178
Query: 283 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 342
+QN E ++ L+NK P W++ Q + LNF+GRVT ASVKNFQ+
Sbjct: 179 --------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 224
Query: 343 VASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
+ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 225 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 163/296 (55%), Gaps = 58/296 (19%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPTCTD 166
+P P+G ++C I R++ TY+L+L +DGK FLLA RK ++ ++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSKTSN 70
Query: 167 YIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNMKQV 222
Y+IS++ D+S+G +YIG RSN +GTKFT+YD +P A + + + RQ
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ------ 124
Query: 223 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 282
+A + YE NVLG +GPR+M + +P ++ V H + L
Sbjct: 125 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETLL-- 170
Query: 283 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 342
+QN E ++ L+NK P W++ Q + LNF+GRVT ASVKNFQ+
Sbjct: 171 --------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 216
Query: 343 VASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
+ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 217 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 163/296 (55%), Gaps = 58/296 (19%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPTCTD 166
+P P+G ++C I R++ TY+L+L +DGK FLLA RK ++ ++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSKTSN 70
Query: 167 YIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNMKQV 222
Y+IS++ D+S+G +YIG RSN +GTKFT+YD +P A + + + RQ
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ------ 124
Query: 223 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 282
+A + YE NVLG +GPR+M + +P ++ V H + L
Sbjct: 125 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPRNEHETLL-- 170
Query: 283 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 342
+QN E ++ L+NK P W++ + + LNF+GRVT ASVKNFQ+
Sbjct: 171 --------------ARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQI 216
Query: 343 VASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
+ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 217 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 150/292 (51%), Gaps = 54/292 (18%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYI 168
+P P+G ++C + R++ +Y+L+L + FLLA RK +R +Y+
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTANYL 85
Query: 169 ISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKL 226
IS++ ++S+G +IG RSN LG +FT++D T S RQ
Sbjct: 86 ISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ---------- 135
Query: 227 LAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSI 286
+A + YE NVLG RGPRRM + IP S E V P + GL
Sbjct: 136 -----ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL------ 180
Query: 287 PFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 346
+QN E L+ L NK P W++ + LNF GRVT ASVKNFQ+V +
Sbjct: 181 ---------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA- 230
Query: 347 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
+ + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 231 ------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 145/286 (50%), Gaps = 54/286 (18%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYI 168
+P P+G ++C + R++ +Y+L+L + FLLA RK +R +Y+
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKV-----FLLAGRKRKRSKTANYL 61
Query: 169 ISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKL 226
IS++ ++S+G +IG RSN LG +FT++D T S RQ
Sbjct: 62 ISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ---------- 111
Query: 227 LAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSI 286
+A + YE NVLG RGPRRM + IP S E V P + GL
Sbjct: 112 -----ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRNASDGL------ 156
Query: 287 PFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASL 346
+QN E L+ L NK P W++ + LNF GRVT ASVKNFQ+V +
Sbjct: 157 ---------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA- 206
Query: 347 ENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 392
+ + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 207 ------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,811,241
Number of Sequences: 62578
Number of extensions: 473737
Number of successful extensions: 905
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)