Query 015934
Match_columns 398
No_of_seqs 237 out of 366
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 6E-127 1E-131 941.0 27.1 351 1-398 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.9E-83 8.4E-88 613.0 17.3 243 116-392 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.9E-19 4.2E-24 184.7 4.4 77 306-392 485-561 (565)
4 PF12937 F-box-like: F-box-lik 97.8 8E-06 1.7E-10 59.1 1.3 35 52-94 1-35 (47)
5 PF00646 F-box: F-box domain; 97.6 8.9E-06 1.9E-10 58.5 -0.8 39 51-97 2-40 (48)
6 PLN03215 ascorbic acid mannose 97.2 0.00012 2.5E-09 75.3 1.3 40 50-96 2-41 (373)
7 smart00256 FBOX A Receptor for 97.2 7E-05 1.5E-09 51.4 -0.5 33 55-95 1-33 (41)
8 PF12043 DUF3527: Domain of un 96.8 0.0017 3.6E-08 66.3 5.0 58 330-393 287-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 89.5 0.17 3.7E-06 51.6 1.5 43 49-94 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 59.3 2.8 6.1E-05 43.2 -0.3 67 52-126 98-167 (419)
11 PF11922 DUF3440: Domain of un 29.2 58 0.0012 31.0 3.3 28 75-109 144-171 (181)
12 PF04525 Tub_2: Tubby C 2; In 23.2 2.8E+02 0.006 25.4 6.6 75 121-198 62-143 (187)
13 PF14642 FAM47: FAM47 family 21.9 30 0.00065 34.5 -0.0 36 53-98 139-177 (258)
14 COG2235 ArcA Arginine deiminas 21.7 2.9E+02 0.0063 29.5 7.1 116 69-202 216-340 (409)
15 PF10644 Misat_Tub_SegII: Misa 20.2 28 0.00061 30.1 -0.5 12 184-195 8-20 (115)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=6e-127 Score=940.97 Aligned_cols=351 Identities=58% Similarity=0.940 Sum_probs=307.1
Q ss_pred CchhhhhhhhccccCcceecceeeeecccCCcccceecccccccccccCCccCCCChHHHHHHHHhhhhcCCCCCCccce
Q 015934 1 MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNV 80 (398)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~v 80 (398)
|+++++++++++.. +++..........+..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|++|
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~v 73 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGSGTKGPEDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRNV 73 (355)
T ss_pred CCccCccCCCCccc------chhcccccccccCCCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccccc
Confidence 78999999998876 444444322111233333331 11111228999999999999999999999999999999
Q ss_pred eeecccchhHHHHHHHHhhccccccceeccccccCCCCCCceEEEEEEEeccCCeEEEEeccccCCC--CCCcEEEEEEe
Q 015934 81 VACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARK 158 (398)
Q Consensus 81 v~ca~vc~~wr~~~~eiv~~pe~~g~~tFpisLkqPgPrd~~iQC~IkR~k~~~tY~LyL~l~~~~~--~~gkfLLaArK 158 (398)
|+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|||+|++|+||++|.+++. |++||||||||
T Consensus 74 vs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark 153 (355)
T KOG2502|consen 74 VSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARK 153 (355)
T ss_pred ccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999998753 77999999999
Q ss_pred cCCCCcceEEEEccCCCCCCCCCceee--eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEE
Q 015934 159 CRRPTCTDYIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHI 236 (398)
Q Consensus 159 rrr~~tSnYiISld~~dlSr~S~~yVG--RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V 236 (398)
+||+||+|||||+|++||||++++||| |||||||||||||+|.++. |.++ ++|+++|+||+|
T Consensus 154 ~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~----------r~~~------~~~~~~~~la~V 217 (355)
T KOG2502|consen 154 RRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPS----------RRFN------KVPSGRQELAAV 217 (355)
T ss_pred ecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCcc----------cccc------cCCcccceeeEE
Confidence 999999999999999999999999999 9999999999999976542 3333 689999999999
Q ss_pred EEeecccCCCCCceeeEeeccCCCcccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEeeCCCc
Q 015934 237 SYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPR 316 (398)
Q Consensus 237 ~Ye~NVLg~rGPRrM~~im~~IP~~~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~ 316 (398)
+||+||||+||||||+|+||+||.++ |+|++|.|++..+.. .+ ++ +.+..++++++|+||+|+
T Consensus 218 ~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r--------~~~k~~e~~lvL~NK~P~ 280 (355)
T KOG2502|consen 218 IYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FR--------SQNKDKEGLLVLKNKTPR 280 (355)
T ss_pred EEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hh--------ccccCcccceEeecCCCc
Confidence 99999999999999999999999987 899999987654421 01 11 113346899999999999
Q ss_pred ccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccc
Q 015934 317 WHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA 396 (398)
Q Consensus 317 w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlA 396 (398)
|||++||||||||||||+||||||||||.. ++++|||||||||||+|||||+|||||||||||||||||||||
T Consensus 281 wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKla 353 (355)
T KOG2502|consen 281 WNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLA 353 (355)
T ss_pred cccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999985 5699999999999999999999999999999999999999999
Q ss_pred cC
Q 015934 397 CE 398 (398)
Q Consensus 397 CE 398 (398)
||
T Consensus 354 Ce 355 (355)
T KOG2502|consen 354 CE 355 (355)
T ss_pred CC
Confidence 98
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.9e-83 Score=613.04 Aligned_cols=243 Identities=55% Similarity=0.914 Sum_probs=182.9
Q ss_pred CCCCCceEEEEEEEeccCCeEEEEeccccCC-CCCCcEEEEEEecCCCCcceEEEEccCCCCCCCCCceee--eeccccc
Q 015934 116 PGPRGSLLQCYIKRNRSSQTYYLYLGLNQSS-NDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIG--RSNFLGT 192 (398)
Q Consensus 116 PgPrd~~iQC~IkR~k~~~tY~LyL~l~~~~-~~~gkfLLaArKrrr~~tSnYiISld~~dlSr~S~~yVG--RSNflGT 192 (398)
|||+|++|||+|+|||+|++|+||+.++..+ .+++||||||||+++++||||+|||+++|+||++++||| ||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 8999999999999999998766666655543 478899999999999999999999999999999999999 9999999
Q ss_pred EEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEEEEeecccCCCCCceeeEeeccCCCcccCCCCCCCCc
Q 015934 193 KFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQ 272 (398)
Q Consensus 193 kFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~~~i~~gg~~p~q 272 (398)
+|+|||+|.+++.+. ..+|..+..++|||+|.||+||||++|||||+|+||+|+....++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999998886543 1256677889999999999999999999999999999998877666665543
Q ss_pred cccccCCCCCCCCcccccccchhhcccccccccceEEEeeCCCcccccccceEeccCCceeccccceeEEEecccCCcCC
Q 015934 273 TEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 352 (398)
Q Consensus 273 ~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~ 352 (398)
+. ..+.-..+ ........+++++|+||+|+|||+++||||||+||||+|||||||||++.
T Consensus 148 p~----~~~~~~~~----------~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~------ 207 (246)
T PF01167_consen 148 PL----NQEKDSLL----------SRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS------ 207 (246)
T ss_dssp -S----S-CCCSHH----------HHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT------
T ss_pred cc----cccccccc----------ccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC------
Confidence 21 10110000 11113356789999999999999999999999999999999999999974
Q ss_pred CCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCc
Q 015934 353 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 392 (398)
Q Consensus 353 ~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfD 392 (398)
+++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 208 -~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 208 -DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred -CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 688999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.76 E-value=1.9e-19 Score=184.72 Aligned_cols=77 Identities=43% Similarity=0.742 Sum_probs=71.6
Q ss_pred ceEEEeeCCCcccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHH
Q 015934 306 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA 385 (398)
Q Consensus 306 ~~~vL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFa 385 (398)
+..++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|+.+.|++||+||+|+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 4569999999999999999999999999999999999764 467899999999999999999999999999
Q ss_pred HHHHhCc
Q 015934 386 ICLSSFD 392 (398)
Q Consensus 386 I~LssfD 392 (398)
+||++.-
T Consensus 555 valanvt 561 (565)
T KOG2503|consen 555 VALANVT 561 (565)
T ss_pred HHHhhhh
Confidence 9999853
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.80 E-value=8e-06 Score=59.06 Aligned_cols=35 Identities=26% Similarity=0.667 Sum_probs=30.0
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHH
Q 015934 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (398)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (398)
|..||+|+|.+|+..++.. ++..|+.|||.|++++
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHH
Confidence 7899999999999888543 7999999999999997
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.62 E-value=8.9e-06 Score=58.46 Aligned_cols=39 Identities=18% Similarity=0.526 Sum_probs=32.0
Q ss_pred ccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHHH
Q 015934 51 CWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEI 97 (398)
Q Consensus 51 ~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ei 97 (398)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999997754 999999999999998654
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.22 E-value=0.00012 Score=75.33 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=37.2
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH
Q 015934 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (398)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (398)
..|+.||+|||+.|..|+ |++-|++--++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 369999999999999999 9999999999999999998764
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.19 E-value=7e-05 Score=51.36 Aligned_cols=33 Identities=33% Similarity=0.878 Sum_probs=29.6
Q ss_pred CChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHH
Q 015934 55 MPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (398)
Q Consensus 55 ~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (398)
||+|++.+|+.++ |. ++..+|+.||+.||.+++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhc
Confidence 7999999999998 44 789999999999999874
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.77 E-value=0.0017 Score=66.28 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=47.3
Q ss_pred CceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCcc
Q 015934 330 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 393 (398)
Q Consensus 330 GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDt 393 (398)
.+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+||++-.++
T Consensus 287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45566677788997653 23444899999999999999999999999999999987654
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.52 E-value=0.17 Score=51.64 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCccCC---CChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHH
Q 015934 49 QSCWAN---MPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (398)
Q Consensus 49 ~~~w~~---~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (398)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 778866 99999999999996432 12366789999999876654
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=59.28 E-value=2.8 Score=43.18 Aligned_cols=67 Identities=22% Similarity=0.519 Sum_probs=52.1
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH--HhhccccccceeccccccCCCCCCc-eEEEE
Q 015934 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE--IVKTLEVSGKLTFPISLKQPGPRGS-LLQCY 126 (398)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e--iv~~pe~~g~~tFpisLkqPgPrd~-~iQC~ 126 (398)
|..||.|+|.+|.. |=.-++...-|+||++|-.+..+ .-.+.+..|+---|++|-|=..|+. .++|-
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 99999999999986 55678889999999999887643 3355667787777877777776764 55664
No 11
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=29.18 E-value=58 Score=30.99 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCccceeeecccchhHHHHHHHHhhccccccceec
Q 015934 75 PPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTF 109 (398)
Q Consensus 75 p~r~~vv~ca~vc~~wr~~~~eiv~~pe~~g~~tF 109 (398)
++.+++ |+||.||+-|.|+---|-.+.|
T Consensus 144 ~~~k~i-------PswkRic~~ilKND~~cr~lsF 171 (181)
T PF11922_consen 144 ENFKDI-------PSWKRICKCILKNDYWCRYLSF 171 (181)
T ss_pred cccccC-------chHHHHHHHHHccchhhhhccC
Confidence 456666 9999999999999999988888
No 12
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=23.25 E-value=2.8e+02 Score=25.42 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=28.4
Q ss_pred ceEEEEEEEeccC--CeEEEEeccccCCCCCCcEEEEEEecC-CCCcceEEEEccCC-CCCCCCCceee---eecccccE
Q 015934 121 SLLQCYIKRNRSS--QTYYLYLGLNQSSNDDGKFLLAARKCR-RPTCTDYIISLNCD-DVSKGSSTYIG---RSNFLGTK 193 (398)
Q Consensus 121 ~~iQC~IkR~k~~--~tY~LyL~l~~~~~~~gkfLLaArKrr-r~~tSnYiISld~~-dlSr~S~~yVG---RSNflGTk 193 (398)
|..-..|+|..-+ ++|..|.+-. .++.+.+...||.. -...++..+.+.+. ..+-.+....+ +.||++-+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 4555677774333 5899998521 22235677777751 12223333343322 11111122223 88999999
Q ss_pred EEEEc
Q 015934 194 FTIYD 198 (398)
Q Consensus 194 FtIYD 198 (398)
|+|||
T Consensus 139 ~~I~~ 143 (187)
T PF04525_consen 139 FTIYD 143 (187)
T ss_dssp -EEEE
T ss_pred EEEEE
Confidence 99997
No 13
>PF14642 FAM47: FAM47 family
Probab=21.90 E-value=30 Score=34.53 Aligned_cols=36 Identities=36% Similarity=0.688 Sum_probs=25.4
Q ss_pred CCCChHHHHHHHHhhhhc---CCCCCCccceeeecccchhHHHHHHHHh
Q 015934 53 ANMPPELLRDVLLRIEAS---ETTWPPRKNVVACAGVCRSWREIMKEIV 98 (398)
Q Consensus 53 ~~~~~ell~~~~~r~e~~---~~~wp~r~~vv~ca~vc~~wr~~~~eiv 98 (398)
..||||||.+|++=|+-. |++| +-|.-+|..++|-.
T Consensus 139 E~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept 177 (258)
T PF14642_consen 139 EDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPT 177 (258)
T ss_pred ccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCc
Confidence 468999999999977533 4666 34666777766554
No 14
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=21.70 E-value=2.9e+02 Score=29.51 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=66.5
Q ss_pred hcCCCCCCccceeeecccchhHHHHHHHHhhccccccceeccccccCCCCCCceEEEEEEEeccCC---eEEEEeccccC
Q 015934 69 ASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQ---TYYLYLGLNQS 145 (398)
Q Consensus 69 ~~~~~wp~r~~vv~ca~vc~~wr~~~~eiv~~pe~~g~~tFpisLkqPgPrd~~iQC~IkR~k~~~---tY~LyL~l~~~ 145 (398)
|+++-||..+++|.--=-=|++......+-+....++ ..| ...+-+-|-+++..+ ||.=+
T Consensus 216 EGGD~~~~g~~~~lIGvseRT~~~~ie~La~~lf~~~-~~~----------~~v~a~~~~k~ra~MHLDTvFt~------ 278 (409)
T COG2235 216 EGGDFLPLGKDVVLIGVSERTDWGAVEALAKLLFKDD-VGF----------KRVIAIEIPKNRAFMHLDTVFTM------ 278 (409)
T ss_pred cCcceEEecCceEEEEecccCCHHHHHHHHHHhhcCC-cce----------eEEeeeecccchhhhchheeeee------
Confidence 3567899999999988888999888888877777666 333 122334444455543 33222
Q ss_pred CCCCCcEEEEEEecCCCCcceEEEEccCCC--CCCCCCceee-eecccc---cEEEEEcCCCC
Q 015934 146 SNDDGKFLLAARKCRRPTCTDYIISLNCDD--VSKGSSTYIG-RSNFLG---TKFTIYDGHPP 202 (398)
Q Consensus 146 ~~~~gkfLLaArKrrr~~tSnYiISld~~d--lSr~S~~yVG-RSNflG---TkFtIYD~g~p 202 (398)
.+.++|.+...=....+-.-|.+.-+.+. +-..-..+++ -++++| -+++-+..|..
T Consensus 279 -vd~D~f~v~~~v~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~I~~gg~d~ 340 (409)
T COG2235 279 -VDRDKFTVHPEVLEAGTLEVYSLTPGGNKLIIIEELGDLLEYLAEALGIDKVRLIETGGGDV 340 (409)
T ss_pred -ecCceEEEeHHHhccceeEEEEEecCCCcceeeccchhHHHHHHHHhCCCcceEEEeCCCcc
Confidence 24566666552222223344555544442 2233445667 788999 33444444443
No 15
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=20.19 E-value=28 Score=30.06 Aligned_cols=12 Identities=50% Similarity=0.958 Sum_probs=10.3
Q ss_pred ee-eecccccEEE
Q 015934 184 IG-RSNFLGTKFT 195 (398)
Q Consensus 184 VG-RSNflGTkFt 195 (398)
+| +|||+||.|.
T Consensus 8 ~G~~aN~vgtHfw 20 (115)
T PF10644_consen 8 LGHYANFVGTHFW 20 (115)
T ss_pred cccccCcHHHhhh
Confidence 57 9999999875
Done!