Query 015934
Match_columns 398
No_of_seqs 237 out of 366
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 3E-88 1E-92 656.4 23.3 244 105-398 24-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 2.4E-85 8.1E-90 627.2 23.9 233 113-392 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 9.3E-07 3.2E-11 64.2 2.0 40 48-95 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.0002 7E-09 66.9 1.3 40 47-94 4-43 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00042 1.4E-08 67.8 2.1 38 50-95 49-87 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00048 1.6E-08 69.2 0.9 42 48-96 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.5 0.011 3.7E-07 56.8 1.7 41 47-95 14-54 (445)
8 3v7d_B Cell division control p 94.4 0.0062 2.1E-07 58.4 -0.3 42 47-96 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.9 0.012 4.1E-07 58.0 -1.3 39 50-96 3-41 (312)
10 1p22_A F-BOX/WD-repeat protein 92.4 0.018 6.2E-07 55.3 -0.8 42 47-96 6-51 (435)
11 3ogk_B Coronatine-insensitive 92.0 0.034 1.2E-06 55.8 0.6 37 52-95 13-49 (592)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=3e-88 Score=656.37 Aligned_cols=244 Identities=41% Similarity=0.750 Sum_probs=187.2
Q ss_pred cceeccccccCCCCCCceEEEEEEEeccC------CeEEEEeccccCCCCCCcEEEEEEecCCCCcceEEEEccCCCCCC
Q 015934 105 GKLTFPISLKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSK 178 (398)
Q Consensus 105 g~~tFpisLkqPgPrd~~iQC~IkR~k~~------~tY~LyL~l~~~~~~~gkfLLaArKrrr~~tSnYiISld~~dlSr 178 (398)
....| |+||+|+|++|||+|+|||+| ++|||||+ .++++|||||||+|+++|+||+||+|++||+|
T Consensus 24 ~~~~f---l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr 95 (276)
T 2fim_A 24 EPREF---VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSR 95 (276)
T ss_dssp -CTTG---GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred HHHHH---hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhccc
Confidence 44567 999999999999999999998 59999994 46789999999999999999999999999999
Q ss_pred CCCceee--eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEEEEeecccCCCCCceeeEeec
Q 015934 179 GSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMD 256 (398)
Q Consensus 179 ~S~~yVG--RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~im~ 256 (398)
++++||| ||||+||+|+|||+|.+++.+ .+|.++.+++|||+|+||+||||++|||+|+|+||
T Consensus 96 ~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP 160 (276)
T 2fim_A 96 GGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIP 160 (276)
T ss_dssp ---CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEE
T ss_pred CCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEec
Confidence 9999999 999999999999999876532 24667788999999999999999999999999986
Q ss_pred cCCCcccCCCCCCCCccccccCC-CCCCCCcccccccchhhcccccccccceEEEeeCCCcccccccceEeccCCceecc
Q 015934 257 AIPASSIEPGGVAPTQTEFHHSG-LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 335 (398)
Q Consensus 257 ~IP~~~i~~gg~~p~q~~~~~~~-~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~w~e~lq~~~LnF~GRVt~a 335 (398)
.+ . +.|+..|.+ +.+ .+++ +..+ .+.+.+++++|+||+|+|||++|||||||+||||+|
T Consensus 161 ~~---~-~~~~~~~~~----p~~~~~~l--l~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a 220 (276)
T 2fim_A 161 GM---S-AENERVPIR----PRNASDGL--LVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220 (276)
T ss_dssp CB---C-TTSCBCCCC----CSSTTCSH--HHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred Cc---c-cCCCEeccc----CCCccccc--chhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence 53 2 234433332 211 1221 1011 123557899999999999999999999999999999
Q ss_pred ccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015934 336 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398 (398)
Q Consensus 336 SVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE 398 (398)
||||||||+++ ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 221 SvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 221 SVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99999999974 578999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=2.4e-85 Score=627.21 Aligned_cols=233 Identities=40% Similarity=0.749 Sum_probs=190.2
Q ss_pred ccCCCCCCceEEEEEEEeccC------CeEEEEeccccCCCCCCcEEEEEEecCCCCcceEEEEccCCCCCCCCCceee-
Q 015934 113 LKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIG- 185 (398)
Q Consensus 113 LkqPgPrd~~iQC~IkR~k~~------~tY~LyL~l~~~~~~~gkfLLaArKrrr~~tSnYiISld~~dlSr~S~~yVG- 185 (398)
|+||+|+|++|||+|+|||+| ++||||++ .++++|||||||+++++||||+||+|++||||++++|||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 999999999999999999998 58999984 456789999999999999999999999999999999999
Q ss_pred -eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEEEEeecccCCCCCceeeEeeccCCCcccC
Q 015934 186 -RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIE 264 (398)
Q Consensus 186 -RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~~~i~ 264 (398)
||||+||+|+|||+|++++.+ .+|.++++++|||+|.||+||||++|||+|+|+||.+ . +
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~-~ 140 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 140 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 999999999999999876532 2466778899999999999999999999999998653 2 3
Q ss_pred CCCCCCCccccccCC-CCCCCCcccccccchhhcccccccccceEEEeeCCCcccccccceEeccCCceeccccceeEEE
Q 015934 265 PGGVAPTQTEFHHSG-LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 343 (398)
Q Consensus 265 ~gg~~p~q~~~~~~~-~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv 343 (398)
+|+..|.+ +.+ ++++ +.. ..+.+.+++++|+||+|+|||++|||||||+||||+|||||||||
T Consensus 141 ~~~~~~~~----p~~~~~~~--~~~----------~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv 204 (246)
T 3c5n_A 141 ENERVPIR----PRNASDGL--LVR----------WQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV 204 (246)
T ss_dssp TSCBCCCC----CSSTTSSH--HHH----------HHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEE
T ss_pred CCCEeecc----CCCccccc--hhh----------hhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEE
Confidence 34444332 211 1221 100 112355789999999999999999999999999999999999999
Q ss_pred ecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCc
Q 015934 344 ASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 392 (398)
Q Consensus 344 ~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfD 392 (398)
+++ ++++||||||||++|+|||||+|||||||||||||||||
T Consensus 205 ~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 205 HAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp BTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred ecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 974 578999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.10 E-value=9.3e-07 Score=64.16 Aligned_cols=40 Identities=23% Similarity=0.612 Sum_probs=32.8
Q ss_pred cCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHH
Q 015934 48 KQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (398)
Q Consensus 48 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (398)
++..|+.||+|+|..|+.++ | .++++.||.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999 3 4789999999999999873
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.93 E-value=0.0002 Score=66.89 Aligned_cols=40 Identities=25% Similarity=0.678 Sum_probs=33.5
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHH
Q 015934 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIM 94 (398)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~ 94 (398)
.++..|+.||+|+|..|+..+.. +++++||.||++|++++
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~--------~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLA 43 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCH--------HHHHHTTSSCHHHHHHH
T ss_pred cccCChhhCCHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHh
Confidence 35678999999999999999932 37899999999999997
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.77 E-value=0.00042 Score=67.79 Aligned_cols=38 Identities=37% Similarity=0.767 Sum_probs=33.4
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCcccee-eecccchhHHHHHH
Q 015934 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVV-ACAGVCRSWREIMK 95 (398)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv-~ca~vc~~wr~~~~ 95 (398)
...+.||+|||.+|+.|| |. ++++ .|+.|||+||.++.
T Consensus 49 ~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhc
Confidence 457899999999999999 66 5688 99999999999864
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.56 E-value=0.00048 Score=69.20 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=30.9
Q ss_pred cCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH
Q 015934 48 KQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (398)
Q Consensus 48 ~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (398)
+...|+.||+|+|..|+.++ |..+++++|+.||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 7778999999999999999443
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.53 E-value=0.011 Score=56.77 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=35.3
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHH
Q 015934 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (398)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (398)
....-++.||+|||..|+..|+. +++..||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 45667999999999999999944 668999999999998874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.44 E-value=0.0062 Score=58.41 Aligned_cols=42 Identities=17% Similarity=0.496 Sum_probs=35.8
Q ss_pred ccCCccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH
Q 015934 47 FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (398)
Q Consensus 47 ~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (398)
.+..-++.||+|||..|+..|+ . ++++.||.||+.|++++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~-------~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQ-------F-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSC-------H-HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCC-------H-HHHHHHHHHHHHHHHHHcC
Confidence 4566788999999999999993 3 5889999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.92 E-value=0.012 Score=57.98 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=33.9
Q ss_pred CccCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH
Q 015934 50 SCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (398)
Q Consensus 50 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (398)
+-|..||.|++..|+.-|+. +++..||.||+.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999954 5699999999999999854
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.40 E-value=0.018 Score=55.31 Aligned_cols=42 Identities=19% Similarity=0.555 Sum_probs=35.0
Q ss_pred ccCCccCCCChH----HHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHHH
Q 015934 47 FKQSCWANMPPE----LLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKE 96 (398)
Q Consensus 47 ~~~~~w~~~~~e----ll~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~e 96 (398)
.+.+--+.||+| ||..|+..|+. +++..||.|||.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 455667889999 99999999964 6788999999999988753
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.02 E-value=0.034 Score=55.83 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=32.5
Q ss_pred cCCCChHHHHHHHHhhhhcCCCCCCccceeeecccchhHHHHHH
Q 015934 52 WANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMK 95 (398)
Q Consensus 52 w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~ 95 (398)
.+.||+|+|..|+..+ ++.+++++|+-||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 3579999999999999 456889999999999999954
Done!