Query 015935
Match_columns 398
No_of_seqs 127 out of 1504
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-76 2.2E-81 611.7 42.4 372 13-384 2-373 (527)
2 TIGR02339 thermosome_arch ther 100.0 1.6E-76 3.4E-81 609.6 42.5 366 12-384 9-375 (519)
3 TIGR02340 chap_CCT_alpha T-com 100.0 1.4E-75 3.1E-80 603.8 43.5 377 8-384 1-377 (536)
4 TIGR02344 chap_CCT_gamma T-com 100.0 1.3E-75 2.7E-80 603.6 41.3 366 12-384 9-376 (525)
5 KOG0361 Chaperonin complex com 100.0 1.1E-76 2.3E-81 553.5 25.7 358 13-384 14-378 (543)
6 TIGR02343 chap_CCT_epsi T-comp 100.0 7.3E-75 1.6E-79 597.2 41.2 362 13-384 21-386 (532)
7 TIGR02347 chap_CCT_zeta T-comp 100.0 1.5E-74 3.3E-79 593.7 43.3 363 11-384 8-381 (531)
8 cd03343 cpn60 cpn60 chaperonin 100.0 1.2E-74 2.6E-79 596.0 42.1 365 12-384 8-372 (517)
9 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.2E-74 2.7E-79 596.1 42.0 362 13-384 17-382 (526)
10 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.1E-74 1.5E-78 590.3 42.5 360 11-384 8-374 (522)
11 TIGR02342 chap_CCT_delta T-com 100.0 1.7E-73 3.7E-78 586.1 42.1 363 13-384 3-372 (517)
12 PTZ00212 T-complex protein 1 s 100.0 3.6E-73 7.8E-78 585.2 42.7 358 12-384 15-381 (533)
13 cd03336 TCP1_beta TCP-1 (CTT o 100.0 5.6E-73 1.2E-77 582.2 43.2 358 12-384 6-369 (517)
14 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.5E-73 1.6E-77 582.1 41.6 363 13-384 2-371 (515)
15 TIGR02345 chap_CCT_eta T-compl 100.0 2.6E-72 5.6E-77 577.9 41.0 360 11-384 10-375 (522)
16 TIGR02341 chap_CCT_beta T-comp 100.0 1.3E-71 2.7E-76 571.7 42.5 359 11-384 6-370 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 1.1E-70 2.5E-75 566.0 42.7 359 13-384 11-373 (531)
18 KOG0358 Chaperonin complex com 100.0 7.9E-73 1.7E-77 526.7 24.0 363 13-384 20-389 (534)
19 KOG0360 Chaperonin complex com 100.0 2.6E-72 5.6E-77 536.1 25.6 383 1-384 1-383 (545)
20 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.1E-69 2.4E-74 553.4 38.2 333 12-384 5-338 (484)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.9E-69 1.1E-73 548.4 35.6 326 11-384 8-335 (480)
22 cd00309 chaperonin_type_I_II c 100.0 1.3E-65 2.9E-70 522.7 38.0 319 14-384 3-321 (464)
23 COG0459 GroL Chaperonin GroEL 100.0 3E-65 6.6E-70 518.7 34.2 357 12-384 4-369 (524)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.9E-65 1.5E-69 516.9 36.9 319 15-384 4-325 (472)
25 KOG0363 Chaperonin complex com 100.0 5.1E-66 1.1E-70 479.1 24.4 359 11-384 10-374 (527)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.1E-64 2.3E-69 519.6 36.1 338 31-384 1-340 (485)
27 KOG0364 Chaperonin complex com 100.0 9.5E-67 2.1E-71 493.7 17.8 365 10-384 10-376 (527)
28 KOG0362 Chaperonin complex com 100.0 1.1E-61 2.3E-66 466.2 33.3 362 7-384 12-376 (537)
29 KOG0359 Chaperonin complex com 100.0 8.7E-62 1.9E-66 459.4 13.6 358 13-384 11-372 (520)
30 PRK12849 groEL chaperonin GroE 100.0 7.6E-59 1.7E-63 477.3 35.9 312 13-373 4-338 (542)
31 PRK00013 groEL chaperonin GroE 100.0 1E-58 2.3E-63 476.3 36.4 309 13-374 4-339 (542)
32 PTZ00114 Heat shock protein 60 100.0 1.4E-58 3.1E-63 477.4 37.3 325 11-384 14-397 (555)
33 cd03344 GroEL GroEL_like type 100.0 1.3E-58 2.7E-63 474.4 36.3 311 14-373 3-336 (520)
34 PRK12850 groEL chaperonin GroE 100.0 8.6E-58 1.9E-62 470.2 36.7 314 13-374 5-340 (544)
35 PRK12851 groEL chaperonin GroE 100.0 1.2E-57 2.7E-62 468.7 36.7 314 13-374 5-340 (541)
36 TIGR02348 GroEL chaperonin Gro 100.0 8E-58 1.7E-62 469.3 35.1 308 13-374 3-338 (524)
37 PRK12852 groEL chaperonin GroE 100.0 1.8E-56 3.9E-61 461.3 35.2 312 13-373 5-339 (545)
38 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-55 4.1E-60 452.5 35.1 323 13-384 5-385 (546)
39 CHL00093 groEL chaperonin GroE 100.0 3E-55 6.4E-60 450.8 34.1 310 13-369 4-335 (529)
40 PLN03167 Chaperonin-60 beta su 100.0 1E-54 2.2E-59 449.7 31.1 312 13-371 58-407 (600)
41 cd03334 Fab1_TCP TCP-1 like do 100.0 1.1E-38 2.5E-43 300.1 23.1 207 165-384 17-229 (261)
42 KOG0357 Chaperonin complex com 100.0 1.3E-38 2.8E-43 293.8 12.1 227 13-384 22-250 (400)
43 cd03333 chaperonin_like chaper 100.0 8.8E-34 1.9E-38 259.4 20.5 185 149-385 2-186 (209)
44 KOG0356 Mitochondrial chaperon 100.0 1.3E-28 2.9E-33 241.2 21.6 309 12-369 17-349 (550)
45 KOG0230 Phosphatidylinositol-4 99.9 2E-24 4.4E-29 230.8 12.7 206 166-384 332-542 (1598)
46 COG1433 Uncharacterized conser 81.4 7 0.00015 32.3 6.9 53 276-329 56-108 (121)
47 PF02579 Nitro_FeMo-Co: Dinitr 75.3 12 0.00026 28.7 6.5 39 277-316 45-83 (94)
48 cd00851 MTH1175 This uncharact 74.6 7.9 0.00017 30.3 5.3 39 276-315 54-92 (103)
49 cd00562 NifX_NifB This CD repr 70.5 15 0.00032 28.7 6.0 38 277-315 53-90 (102)
50 PRK07283 hypothetical protein; 54.8 60 0.0013 25.6 6.8 50 276-328 25-78 (98)
51 PRK13600 putative ribosomal pr 52.0 81 0.0018 24.3 6.8 51 274-324 18-72 (84)
52 cd00852 NifB NifB belongs to a 52.0 53 0.0012 26.0 6.2 39 274-315 56-94 (106)
53 cd01143 YvrC Periplasmic bindi 51.1 53 0.0011 28.6 6.7 52 278-329 53-111 (195)
54 PRK09534 btuF corrinoid ABC tr 48.0 54 0.0012 32.4 6.8 53 277-329 111-170 (359)
55 cd01144 BtuF Cobalamin binding 47.0 66 0.0014 29.3 6.9 52 278-329 50-108 (245)
56 TIGR03151 enACPred_II putative 43.1 1.1E+02 0.0025 29.5 8.0 58 275-332 77-134 (307)
57 TIGR02663 nifX nitrogen fixati 42.9 94 0.002 25.3 6.4 52 275-329 55-110 (119)
58 cd04743 NPD_PKS 2-Nitropropane 42.0 1.1E+02 0.0023 29.9 7.5 57 275-332 72-128 (320)
59 cd00853 NifX NifX belongs to a 41.6 93 0.002 24.4 6.0 38 275-315 53-90 (102)
60 PRK07714 hypothetical protein; 41.6 1.3E+02 0.0029 23.6 6.9 51 276-329 25-79 (100)
61 PRK04175 rpl7ae 50S ribosomal 41.5 1.2E+02 0.0025 25.1 6.7 51 276-329 37-92 (122)
62 PRK06683 hypothetical protein; 40.8 1.4E+02 0.003 22.8 6.5 52 276-330 18-73 (82)
63 TIGR03659 IsdE heme ABC transp 40.6 75 0.0016 30.0 6.3 52 278-329 84-141 (289)
64 PRK13602 putative ribosomal pr 40.2 1.5E+02 0.0032 22.5 6.7 53 275-330 17-73 (82)
65 TIGR00129 fdhD_narQ formate de 39.5 51 0.0011 30.6 4.8 44 275-318 182-225 (237)
66 TIGR03677 rpl7ae 50S ribosomal 39.1 1.3E+02 0.0027 24.6 6.5 50 276-328 33-87 (117)
67 PTZ00106 60S ribosomal protein 38.9 1.3E+02 0.0028 24.3 6.4 51 276-329 32-87 (108)
68 PRK13601 putative L7Ae-like ri 36.2 1.8E+02 0.0039 22.2 6.5 51 276-329 15-69 (82)
69 PRK00724 formate dehydrogenase 35.0 65 0.0014 30.4 4.8 43 275-317 211-253 (263)
70 cd01141 TroA_d Periplasmic bin 34.2 1.1E+02 0.0023 26.7 5.8 50 278-327 62-119 (186)
71 PF01248 Ribosomal_L7Ae: Ribos 33.4 96 0.0021 23.9 4.9 52 275-329 21-77 (95)
72 PF12846 AAA_10: AAA-like doma 33.3 1.1E+02 0.0024 28.4 6.2 58 272-329 240-302 (304)
73 COG1526 FdhD Uncharacterized p 32.8 69 0.0015 30.3 4.5 44 276-319 212-255 (266)
74 PRK06552 keto-hydroxyglutarate 31.3 3.3E+02 0.0072 24.7 8.6 55 276-332 79-134 (213)
75 cd01138 FeuA Periplasmic bindi 30.7 1.2E+02 0.0027 27.6 5.9 51 278-329 59-113 (248)
76 cd03309 CmuC_like CmuC_like. P 30.6 2.9E+02 0.0062 26.9 8.6 68 259-329 188-257 (321)
77 cd00636 TroA-like Helical back 30.6 1.8E+02 0.0039 23.1 6.4 35 278-312 54-88 (148)
78 PRK01018 50S ribosomal protein 30.4 2.6E+02 0.0056 22.0 6.9 51 276-329 23-78 (99)
79 PF00809 Pterin_bind: Pterin b 30.1 1.1E+02 0.0025 27.6 5.4 68 268-335 53-124 (210)
80 PF02634 FdhD-NarQ: FdhD/NarQ 29.6 75 0.0016 29.4 4.2 41 276-316 183-223 (236)
81 PRK05718 keto-hydroxyglutarate 29.6 1.9E+02 0.004 26.4 6.7 56 276-333 78-134 (212)
82 cd03308 CmuA_CmuC_like CmuA_Cm 29.4 3.2E+02 0.007 27.1 9.0 74 259-335 245-321 (378)
83 cd01146 FhuD Fe3+-siderophore 28.7 1.7E+02 0.0037 26.8 6.5 52 278-329 58-115 (256)
84 PRK05583 ribosomal protein L7A 27.8 2.9E+02 0.0064 22.0 6.8 52 276-330 24-79 (104)
85 PF03060 NMO: Nitronate monoox 27.7 2.2E+02 0.0047 27.7 7.3 58 274-331 102-160 (330)
86 PF02603 Hpr_kinase_N: HPr Ser 27.7 67 0.0014 26.6 3.2 43 271-313 67-111 (127)
87 TIGR03859 PQQ_PqqD coenzyme PQ 27.4 1.9E+02 0.0041 21.8 5.4 48 40-87 12-59 (81)
88 cd00717 URO-D Uroporphyrinogen 26.8 3E+02 0.0065 26.6 8.1 72 259-334 205-280 (335)
89 PF07905 PucR: Purine cataboli 26.7 2.1E+02 0.0046 23.3 6.0 42 273-314 60-106 (123)
90 PRK03379 vitamin B12-transport 26.4 1.9E+02 0.0041 26.8 6.4 51 278-328 65-122 (260)
91 cd01139 TroA_f Periplasmic bin 26.4 1.8E+02 0.0038 28.1 6.4 52 278-329 84-148 (342)
92 PF13380 CoA_binding_2: CoA bi 24.9 2E+02 0.0042 23.3 5.4 40 274-313 68-108 (116)
93 cd01140 FatB Siderophore bindi 24.7 1.9E+02 0.004 26.7 6.1 52 278-329 65-123 (270)
94 cd03465 URO-D_like The URO-D _ 24.6 3.8E+02 0.0082 25.6 8.4 72 260-334 199-272 (330)
95 COG1504 Uncharacterized conser 24.3 3.9E+02 0.0085 21.8 6.9 53 279-331 55-113 (121)
96 cd01149 HutB Hemin binding pro 24.1 2.1E+02 0.0046 25.8 6.2 52 278-329 51-110 (235)
97 COG4359 Uncharacterized conser 24.0 1.7E+02 0.0037 26.3 5.0 45 272-316 76-124 (220)
98 COG1358 RPL8A Ribosomal protei 24.0 3.5E+02 0.0077 22.1 6.7 51 274-324 32-87 (116)
99 PF01497 Peripla_BP_2: Peripla 23.6 2.8E+02 0.0062 24.7 6.9 52 278-329 53-112 (238)
100 TIGR01496 DHPS dihydropteroate 22.3 3E+02 0.0065 25.8 6.8 64 268-332 57-123 (257)
101 PF01136 Peptidase_U32: Peptid 22.0 4.9E+02 0.011 23.5 8.2 31 296-326 49-82 (233)
102 cd01424 MGS_CPS_II Methylglyox 21.7 4E+02 0.0087 20.9 6.7 39 296-334 56-102 (110)
103 PF04471 Mrr_cat: Restriction 21.6 1.3E+02 0.0028 23.4 3.7 37 275-311 67-106 (115)
104 cd00739 DHPS DHPS subgroup of 21.5 3.9E+02 0.0085 25.0 7.4 64 268-332 58-125 (257)
105 PF02836 Glyco_hydro_2_C: Glyc 21.4 2.1E+02 0.0046 27.1 5.8 40 274-313 38-78 (298)
106 PRK10343 RNA-binding protein Y 21.0 2E+02 0.0044 22.8 4.5 59 271-332 8-76 (97)
107 TIGR01464 hemE uroporphyrinoge 20.8 4.7E+02 0.01 25.3 8.2 71 260-334 209-283 (338)
No 1
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-76 Score=611.68 Aligned_cols=372 Identities=75% Similarity=1.095 Sum_probs=352.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
++..|.+++..|++||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
|||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++.++++++..+++.|.++|+|+++||+++.+.+.|+
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 161 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA 161 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999623888876678999999999999999998899999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~ 252 (398)
+++++|+..++..+.+|...+++++|++++++|+++.+|++++|++|++++.+++||+.++||||++++++|++++++.+
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 241 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG 241 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccc
Confidence 99999999985323335446788999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~ 332 (398)
+++.++++++++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++++
T Consensus 242 ~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~ 321 (527)
T cd03335 242 VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS 321 (527)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 333 ~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++.+++..+++++.++|+|+.|+++++++++|++|+||+.+.+|||++||++
T Consensus 322 ~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t 373 (527)
T cd03335 322 TLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGAN 373 (527)
T ss_pred ChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCc
Confidence 9987754455677789999999999999999999999999999999999998
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.6e-76 Score=609.59 Aligned_cols=366 Identities=45% Similarity=0.659 Sum_probs=349.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
.+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GD 88 (519)
T TIGR02339 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGD 88 (519)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCcc-CCchHH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLI-GGDSDF 170 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~-~~~~~~ 170 (398)
||||+++|+++|++++.+|+++|+||..|++||+.|++.++++|+++ +.+++..+++.|.++|+|+++||+. +.+.+.
T Consensus 89 GTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ 167 (519)
T TIGR02339 89 GTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEI-ATKISPEDRDLLKKVAETSLTGKASAEVTKDK 167 (519)
T ss_pred CcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcccHHHHHHHHHhhhccccccchhHHH
Confidence 99999999999999999999999999999999999999999999997 8888766788999999999999999 789999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccc
Q 015935 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (398)
Q Consensus 171 ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~ 250 (398)
|++++++|+..+.+...+|...+|+++|++++++|++++||++++|++|++++.+++||+.++||||++++++|++++++
T Consensus 168 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~ 247 (519)
T TIGR02339 168 LANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTE 247 (519)
T ss_pred HHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccc
Confidence 99999999999853223465568889999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 251 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
.++++.+++.+++..+.++|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~i 327 (519)
T TIGR02339 248 IDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKI 327 (519)
T ss_pred cceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 331 VSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 331 i~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++++ ++..+|+|++|+++++|+++|++|+||+.+.+|||++||++
T Consensus 328 i~~~~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 375 (519)
T TIGR02339 328 VSSIKEI------TESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGT 375 (519)
T ss_pred eCchhhC------ChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCC
Confidence 9988664 56789999999999999999999999999999999999998
No 3
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-75 Score=603.82 Aligned_cols=377 Identities=73% Similarity=1.056 Sum_probs=356.6
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhc
Q 015935 8 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDR 87 (398)
Q Consensus 8 ~~~~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~ 87 (398)
||...++.+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~ 80 (536)
T TIGR02340 1 LFLGGERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDR 80 (536)
T ss_pred CCCCcceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCc
Q 015935 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (398)
Q Consensus 88 ~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~ 167 (398)
++||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|++..+++++..+.+.+.++|+|+++||+.+.+
T Consensus 81 ~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~ 160 (536)
T TIGR02340 81 EVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLD 160 (536)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhh
Confidence 99999999999999999999999999999999999999999999999987447888766788999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccc
Q 015935 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (398)
Q Consensus 168 ~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~ 247 (398)
++.|++++++|+..+...+.+|...+++++|++++++|+++++|++++|++|++++.+++||++++||||++++++|+++
T Consensus 161 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~ 240 (536)
T TIGR02340 161 SDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQ 240 (536)
T ss_pred HHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCC
Confidence 99999999999999853223455567889999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhC
Q 015935 248 KMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATG 327 (398)
Q Consensus 248 k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tG 327 (398)
+++.++++.++++.+++.+.+.|++++++++++|.+.|++||+++++|++.+++||.+++|++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tG 320 (536)
T TIGR02340 241 KMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATG 320 (536)
T ss_pred cccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 328 ATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 328 a~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
|++++++.+++..+++++.++|+|+.|+++++|+++|++|+||+.+.+|||++||++
T Consensus 321 a~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t 377 (536)
T TIGR02340 321 GTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGAN 377 (536)
T ss_pred CEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCc
Confidence 999999987754455777889999999999999999999999999999999999998
No 4
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-75 Score=603.64 Aligned_cols=366 Identities=31% Similarity=0.492 Sum_probs=346.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
.+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GD 88 (525)
T TIGR02344 9 TKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGD 88 (525)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l 171 (398)
||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++|+|+++||+.+.|.+.|
T Consensus 89 GTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l 167 (525)
T TIGR02344 89 GTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEI-SIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLM 167 (525)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCHHHHHHHHHHhhccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999997 88887767888999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccc
Q 015935 172 ANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (398)
Q Consensus 172 s~l~~~av~~v~~~~~~g~~~~~~~-~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~ 250 (398)
++++++|++.+.+.+.++...+|++ +|++++++|++++||++++|++|++++.++.||+.++||||++++++|++++++
T Consensus 168 s~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~ 247 (525)
T TIGR02344 168 CDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGE 247 (525)
T ss_pred HHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccc
Confidence 9999999999964321222345554 489999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 251 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
.++++.++++++++.+++.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 327 (525)
T TIGR02344 248 SQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATI 327 (525)
T ss_pred ccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcce-eeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 331 VSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 331 i~~~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++++ +++++|+ |+.|+++++|+++|++|+||+.+.+|||++||++
T Consensus 328 i~~l~~l------~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t 376 (525)
T TIGR02344 328 VNRPEEL------RESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGAS 376 (525)
T ss_pred ecchhhC------CHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCC
Confidence 9998764 5678999 9999999999999999999999999999999998
No 5
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-76 Score=553.48 Aligned_cols=358 Identities=34% Similarity=0.566 Sum_probs=341.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
+..+|.....+|+.||..+++.+||||||+||||+|++..|+++|+|||+||||.|++.||+++.|++++++||.++|||
T Consensus 14 d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDG 93 (543)
T KOG0361|consen 14 DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDG 93 (543)
T ss_pred CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCC
Confidence 45789988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccC----HHHHHHHHHhhcccCccCCch
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG----KDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~----~~~l~~ia~t~l~sK~~~~~~ 168 (398)
|||||+|++++|+++..+++.|+||..|+++|+.|...|++.++++ ++.++..+ ++.|.++|.|+++||+++++.
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~el-av~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek 172 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKEL-AVEIDGSSKTELRELLEKCAATALSSKLIRQEK 172 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHh-eeEecccchhhHHHHHHHHHHHHhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999997 77776433 678999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCC---CCceecCceEEEEeeccc
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFNLQ 245 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~---~~~~~~~~kIlll~~~L~ 245 (398)
++|+++++||+..+. . ..+.++|.|+|++||+++||.+++|+.|++.|++.+ .|+++.||||+++|..||
T Consensus 173 ~fF~~MvVDAV~~ld---~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELE 245 (543)
T KOG0361|consen 173 EFFAKMVVDAVLTLD---N----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELE 245 (543)
T ss_pred HHHHHHHHHHHHhhc---c----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeee
Confidence 999999999998773 1 356789999999999999999999999999999765 589999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHH
Q 015935 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (398)
Q Consensus 246 ~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~ 325 (398)
.+.++.|+++.+.++++++.++++||+.+.++++++.+.|+|||++.-.|.|.|.|||++++|.|..||+.+||.|+..+
T Consensus 246 lKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~a 325 (543)
T KOG0361|consen 246 LKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQA 325 (543)
T ss_pred ecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 326 tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+|+++.++.+++ .+..+|+|+.|+++++|+++|.+|+||++.++||+++||+.
T Consensus 326 cGGsi~tt~~~i------~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGga 378 (543)
T KOG0361|consen 326 CGGSIQTTVSDI------KEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGA 378 (543)
T ss_pred cCcchhhhhhhc------chhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccH
Confidence 999999998774 67899999999999999999999999999999999999985
No 6
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.3e-75 Score=597.23 Aligned_cols=362 Identities=33% Similarity=0.488 Sum_probs=343.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
++..|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 21 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDG 100 (532)
T TIGR02343 21 KRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDG 100 (532)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCc--cCHHHHHHHHHhhcccCccCCchHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSDF 170 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~--~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (398)
|||+++|+++||+++++|+++|+||+.|++||+.|++.++++|+++ +++++. .+++.|.++|+|++++|+.+.+.+.
T Consensus 101 TttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 179 (532)
T TIGR02343 101 TTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEI-SEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRR 179 (532)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcCCCCHHHHHHHHHHhhccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999987 877742 3578899999999999998999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccc
Q 015935 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (398)
Q Consensus 171 ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~ 250 (398)
|++++++|+..+.. ..++ .+|+++|++++++|++++||++++|++|++++.+++||+.++||||++++++|++++++
T Consensus 180 ls~i~~~av~~i~~-~~~~--~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~ 256 (532)
T TIGR02343 180 FAEIAVDAVLMVAD-MERR--DVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPK 256 (532)
T ss_pred HHHHHHHHHHhhhh-cCCC--cCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccc
Confidence 99999999998842 1112 57789999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 251 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
.+.++.+++++++.++.+.|++++++++++|.+.|++||+++++|+|.+++||.++||++++++++++|+|||++|||++
T Consensus 257 ~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~ 336 (532)
T TIGR02343 257 TKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRI 336 (532)
T ss_pred cceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcceeeeEEEEEEcC--eeEEEEecCCCCCeEEEEcccce
Q 015935 331 VSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 331 i~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++++ ++.++|+|+.|+++.+|+ ++|++|+||+.+..|||++||++
T Consensus 337 i~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t 386 (532)
T TIGR02343 337 VPRFEEL------SEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGN 386 (532)
T ss_pred ecccccC------CHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCC
Confidence 9998764 567899999999999997 48999999999999999999998
No 7
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-74 Score=593.74 Aligned_cols=363 Identities=29% Similarity=0.484 Sum_probs=343.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccC
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 90 (398)
..++..|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~G 87 (531)
T TIGR02347 8 KAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITG 87 (531)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhc
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCC-ccCHHHHHHHHHhhcccCccCCchH
Q 015935 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE-KLGKDSLVNCAKTSMSSKLIGGDSD 169 (398)
Q Consensus 91 DGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~-~~~~~~l~~ia~t~l~sK~~~~~~~ 169 (398)
|||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++ +.++. ..+.+.|.++|+|+++||+.+.+++
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 166 (531)
T TIGR02347 88 DGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKF-KIKTEDEVDRELLLNVARTSLRTKLPIDLAD 166 (531)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCHHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999997 76653 3478899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccccc
Q 015935 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (398)
Q Consensus 170 ~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~ 249 (398)
+|++++++|+..+.+ +|. .+++++|++++.+|+++++|++++|++|++++.+++||++++||||++++++|+++++
T Consensus 167 ~ls~iv~~Av~~v~~---~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 167 QLTEIVVDAVLAIKK---DGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHHHHHhh---cCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCcc
Confidence 999999999999853 232 4677889999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCC-------Ce---EEEeCCCCCHHHHHHHHHcCCeEEeeCChHHH
Q 015935 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAG-------AN---VILTTKGIDDMALKYFVEAGAIAVRRVRKEDM 319 (398)
Q Consensus 250 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g-------v~---lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L 319 (398)
+.+..+.+++++++..+.+.|++++++++++|.+.| ++ ||+|+++|+|.+++||.++||++++++++++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~l 322 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNM 322 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHH
Confidence 999999999999999999999999999999999976 25 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 320 RHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 320 ~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+|||++|||+++++++++ ++.++|+|+.|+++.+|+++|++|+||+.+..|||++||++
T Consensus 323 e~ia~~tGa~~i~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t 381 (531)
T TIGR02347 323 ERLTLACGGEALNSVEDL------TPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPN 381 (531)
T ss_pred HHHHHHhCCEEecccccC------CccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCC
Confidence 999999999999998764 66789999999999999999999999999999999999987
No 8
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-74 Score=596.04 Aligned_cols=365 Identities=44% Similarity=0.676 Sum_probs=347.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
.+..+|.+++..|+.||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||
T Consensus 8 ~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GD 87 (517)
T cd03343 8 TQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGD 87 (517)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l 171 (398)
||||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++ +.+++..+++.+.++|+|+++||+.+.+.+.|
T Consensus 88 GTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l 166 (517)
T cd03343 88 GTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEI-AIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKL 166 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHhhcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 88887557889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccccccc
Q 015935 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (398)
Q Consensus 172 s~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~ 251 (398)
++++++|+..+...+ .+...+|+++|++++++|+++++|++++|++|++++.+++||+.++||||++++++|++++++.
T Consensus 167 ~~l~~~A~~~v~~~~-~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~ 245 (517)
T cd03343 167 ADLVVDAVLQVAEKR-DGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEI 245 (517)
T ss_pred HHHHHHHHHHhhhcc-CCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCcccc
Confidence 999999999985321 1223578889999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEc
Q 015935 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (398)
Q Consensus 252 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii 331 (398)
++++.+++.+++..+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 246 ~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii 325 (517)
T cd03343 246 DAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIV 325 (517)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 332 STFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 332 ~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++++++ ++..+|+|+.|+++++|+++|++|+||+.+.+|||++||++
T Consensus 326 ~~~~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 372 (517)
T cd03343 326 TNIDDL------TPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGT 372 (517)
T ss_pred cchhhC------ChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCc
Confidence 998764 56789999999999999999999999999999999999998
No 9
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-74 Score=596.07 Aligned_cols=362 Identities=35% Similarity=0.499 Sum_probs=343.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
++.+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 96 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDG 96 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCc--cCHHHHHHHHHhhcccCccCCchHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSDF 170 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~--~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (398)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +.+++. .+.+.|.++|+|+++||+.+.+.+.
T Consensus 97 Ttt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 175 (526)
T cd03339 97 TTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEI-ADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQ 175 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCcccHHHHHHHHHHhhcccchhhHHHH
Confidence 9999999999999999999999999999999999999999999997 887752 3578899999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccc
Q 015935 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (398)
Q Consensus 171 ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~ 250 (398)
|++++++|+..+... .. ..+|++.|++.+++|++++||++++|++|++++.+++||+.++||||++++++|++++++
T Consensus 176 ~s~i~v~av~~i~~~-~~--~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~ 252 (526)
T cd03339 176 FAEIAVDAVLSVADL-ER--KDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPK 252 (526)
T ss_pred HHHHHHHHHHHHhhc-CC--CccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccc
Confidence 999999999988531 11 146678999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 251 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
.+.++.++++++++.+.++|+++++++++++.+.|++||+++++|+|.+++||.++||++++++++++|+|||++|||++
T Consensus 253 ~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~i 332 (526)
T cd03339 253 TKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRI 332 (526)
T ss_pred cceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcceeeeEEEEEEcC--eeEEEEecCCCCCeEEEEcccce
Q 015935 331 VSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 331 i~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++++ ++..+|+|+.|+++.+|. ++|++|+||+.+.+|||++||++
T Consensus 333 i~~l~~l------~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t 382 (526)
T cd03339 333 VPRFEDL------SPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGN 382 (526)
T ss_pred ecchhhC------ChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCC
Confidence 9998764 567899999999999985 68999999999999999999998
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.1e-74 Score=590.27 Aligned_cols=360 Identities=37% Similarity=0.595 Sum_probs=341.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccC
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 90 (398)
+.++..|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~G 87 (522)
T cd03340 8 GTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVG 87 (522)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCcc----CHHHHHHHHHhhcccCccCC
Q 015935 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL----GKDSLVNCAKTSMSSKLIGG 166 (398)
Q Consensus 91 DGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~----~~~~l~~ia~t~l~sK~~~~ 166 (398)
|||||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++.. +++.|.++|+|+++||+.+.
T Consensus 88 DGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~ 166 (522)
T cd03340 88 DGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEI-AVNIDKEDKEEQRELLEKCAATALNSKLIAS 166 (522)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCcccccccHHHHHHHHHHHhccCcchh
Confidence 999999999999999999999999999999999999999999999997 8888653 36779999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCC---CCceecCceEEEEeec
Q 015935 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFN 243 (398)
Q Consensus 167 ~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~---~~~~~~~~kIlll~~~ 243 (398)
+.++|++++++|+..+.+ .+|.++|++++++|+++.||++++|++|++++.+++ ||++++||||++++++
T Consensus 167 ~~~~l~~l~~~A~~~v~~-------~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~ 239 (522)
T cd03340 167 EKEFFAKMVVDAVLSLDD-------DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVE 239 (522)
T ss_pred HHHHHHHHHHHHHHHhcc-------cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCC
Confidence 999999999999999832 245688999999999999999999999999998765 5899999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHH
Q 015935 244 LQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (398)
Q Consensus 244 L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la 323 (398)
|++++++.+.++.++++++++++.+.|++++.++++++.+.|++||+++++|+|.+++||.++||++++++++++|+|||
T Consensus 240 Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa 319 (522)
T cd03340 240 LELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVA 319 (522)
T ss_pred CCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 324 KATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 324 ~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++|||+++++++++ ++..+|+|+.|+++++|+++|++|+||+.+.+|||++||++
T Consensus 320 ~~tGa~ii~~l~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t 374 (522)
T cd03340 320 QATGGSIQTTVSNI------TDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGA 374 (522)
T ss_pred HHHCCEEeeccccC------CccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCC
Confidence 99999999998764 66789999999999999999999999999999999999987
No 11
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-73 Score=586.09 Aligned_cols=363 Identities=34% Similarity=0.547 Sum_probs=343.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
+...+.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 3 ~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 82 (517)
T TIGR02342 3 DKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDG 82 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ ++|++..+.+.|.++|+|+++||+.+.+.+.|+
T Consensus 83 Ttt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 161 (517)
T TIGR02342 83 TTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEM-SIPVDLSDREILIKSATTSLSSKVVSQYSSLLA 161 (517)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCccCHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999997 888876678899999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccC-CCCCceecCceEEEEeeccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAA-QGMPLRVAPAKIACLDFNLQKTKMQL 251 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~-~~~~~~~~~~kIlll~~~L~~~k~~~ 251 (398)
+++++|+..+.....+| .+++++|++++++|+++++|++++|++|++++.+ ++||+.++||||++++++|++++++.
T Consensus 162 ~l~~~a~~~v~~~~~~~--~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~ 239 (517)
T TIGR02342 162 PLAVDAVLKVIDPENDK--NVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDM 239 (517)
T ss_pred HHHHHHHHHHhccccCC--ccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccc
Confidence 99999999985322233 4678899999999999999999999999999998 48999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCC-----CHHHHHHHHHcCCeEEeeCChHHHHHHHHHh
Q 015935 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (398)
Q Consensus 252 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~L~~la~~t 326 (398)
+.++.++++++++++.++|+++++++++++.+.|++||+|+++| ++.+++||.++||++++++++++|+|||++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~t 319 (517)
T TIGR02342 240 ENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTI 319 (517)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCC-CeEEEEcccce
Q 015935 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT-SAYIILGKVPS 384 (398)
Q Consensus 327 Ga~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~-~~~til~~~~~ 384 (398)
||+++++++++ ++.++|+|+.|+++++++++|++|++|+.+ ..|||++||++
T Consensus 320 Ga~ii~~~~~l------~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t 372 (517)
T TIGR02342 320 GCKPIASIDHF------TADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSN 372 (517)
T ss_pred CCEEEcchhhc------CcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCc
Confidence 99999998764 567899999999999999999999999985 89999999987
No 12
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.6e-73 Score=585.22 Aligned_cols=358 Identities=37% Similarity=0.565 Sum_probs=339.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecC-----CCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhh
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD-----IGDVTITNDGATILKMLEVEHPAAKVLVELAELQD 86 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~-----~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~ 86 (398)
.++.+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|+
T Consensus 15 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd 94 (533)
T PTZ00212 15 AQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQD 94 (533)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccC---HHHHHHHHHhhcccCc
Q 015935 87 REVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG---KDSLVNCAKTSMSSKL 163 (398)
Q Consensus 87 ~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~---~~~l~~ia~t~l~sK~ 163 (398)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+ ++.|.++|+|+++||+
T Consensus 95 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~t~l~sk~ 173 (533)
T PTZ00212 95 EEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEI-AFDHGSDEEKFKEDLLNIARTTLSSKL 173 (533)
T ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CcCCCccchhhHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999997 88876433 5789999999999999
Q ss_pred cCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeec
Q 015935 164 IGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFN 243 (398)
Q Consensus 164 ~~~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~ 243 (398)
.+.+.+.|++++++|+..+.. .+++++|++++++|++++||++++|+++++.+.+ .||++++||||++++++
T Consensus 174 ~~~~~~~l~~i~~~av~~i~~-------~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~ 245 (533)
T PTZ00212 174 LTVEKDHFAKLAVDAVLRLKG-------SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTP 245 (533)
T ss_pred cchhHHHHHHHHHHHHHHHhc-------cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCC
Confidence 999999999999999988842 2567889999999999999999999999998765 58999999999999999
Q ss_pred cccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHH
Q 015935 244 LQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHI 322 (398)
Q Consensus 244 L~~~k~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~l 322 (398)
|++++++. ++++.+++.+++..+.+.|+++++++++.|++.|+++++++++|++.+++||.++||++++++++++++||
T Consensus 246 Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rI 325 (533)
T PTZ00212 246 MDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERL 325 (533)
T ss_pred CCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHH
Confidence 99999997 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 323 AKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 323 a~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
|++|||+++++++++ ++.++|+|+.|+++.+|+++|++|+||+.+.+|||++||++
T Consensus 326 a~~tGa~iis~l~~~------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 381 (533)
T PTZ00212 326 AAALGAEIVSTFDTP------EKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGAS 381 (533)
T ss_pred HHHhCCEEeecCCCC------CHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCC
Confidence 999999999998764 56789999999999999999999999999999999999998
No 13
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-73 Score=582.24 Aligned_cols=358 Identities=35% Similarity=0.552 Sum_probs=338.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecC--CCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhccc
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~ 89 (398)
.++..|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|++++
T Consensus 6 ~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~ 85 (517)
T cd03336 6 AQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEV 85 (517)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHh
Confidence 3578899999999999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCcc---CHHHHHHHHHhhcccCccCC
Q 015935 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGG 166 (398)
Q Consensus 90 GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~---~~~~l~~ia~t~l~sK~~~~ 166 (398)
||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++ +++++.. +++.|.++|+|+++||+.+.
T Consensus 86 GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~l~~ia~t~lssk~~~~ 164 (517)
T cd03336 86 GDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSS-AVDHSSDEEAFREDLLNIARTTLSSKILTQ 164 (517)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhHHHHHHHHHhhccccccch
Confidence 9999999999999999999999999999999999999999999999997 8887421 35789999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccc
Q 015935 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQK 246 (398)
Q Consensus 167 ~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~ 246 (398)
++++|++++++|+..+.. .++.++|++++++|++++||++++|+++++.+.+ .||++++||||++++++|++
T Consensus 165 ~~~~l~~l~~~A~~~v~~-------~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 165 DKEHFAELAVDAVLRLKG-------SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDT 236 (517)
T ss_pred hHHHHHHHHHHHHHHhhc-------cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCc
Confidence 999999999999998831 3567899999999999999999999999988765 47999999999999999999
Q ss_pred ccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHH
Q 015935 247 TKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (398)
Q Consensus 247 ~k~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~ 325 (398)
++++. ++++.+++++++..+.+.|++++++++++|.+.|++++++++.|+|.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 326 tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
|||+++++++++ ++.++|+|+.|++..+|+++|++|+||+++.+|||++||++
T Consensus 317 tGa~ii~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t 369 (517)
T cd03336 317 TGGEIASTFDHP------ELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGAS 369 (517)
T ss_pred hCCEEecccCCC------CcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCC
Confidence 999999998764 56789999999999999999999999999999999999987
No 14
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.5e-73 Score=582.11 Aligned_cols=363 Identities=34% Similarity=0.542 Sum_probs=342.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
++..+.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
|||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++ +.+++..+++.|.++|+|+++||+.+.+++.++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls 160 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSM-SIPVDLNDRESLIKSATTSLNSKVVSQYSSLLA 160 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHhccccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 888865578899999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCC-CCceecCceEEEEeeccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-MPLRVAPAKIACLDFNLQKTKMQL 251 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~-~~~~~~~~kIlll~~~L~~~k~~~ 251 (398)
+++++|+.++.+.+.. ..+|+++|++++++|++++||++++|++|++++.++. ||+.++|||+++++|+|++++++.
T Consensus 161 ~li~~A~~~v~~~~~~--~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~ 238 (515)
T cd03338 161 PIAVDAVLKVIDPATA--TNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDM 238 (515)
T ss_pred HHHHHHHHHhhccccc--CcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEecccccccccc
Confidence 9999999998532211 2577889999999999999999999999999999886 499999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCC-----CHHHHHHHHHcCCeEEeeCChHHHHHHHHHh
Q 015935 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (398)
Q Consensus 252 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~L~~la~~t 326 (398)
+.++.+++.++++.+.++|+++++++++++++.|++||+++++| ++.+++||.++||++++++++++|+|||++|
T Consensus 239 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~t 318 (515)
T cd03338 239 DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTI 318 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCC-CCeEEEEcccce
Q 015935 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKT-TSAYIILGKVPS 384 (398)
Q Consensus 327 Ga~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~til~~~~~ 384 (398)
||+++++++++ ++..+|+|+.|+++++|+++|++|+||++ +.+|||++||++
T Consensus 319 Ga~ii~sl~~l------~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t 371 (515)
T cd03338 319 GCKPVASIDHF------TEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSN 371 (515)
T ss_pred CCEEecccccC------CHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCc
Confidence 99999998764 56789999999999999999999999998 689999999987
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-72 Score=577.93 Aligned_cols=360 Identities=35% Similarity=0.566 Sum_probs=341.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccC
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 90 (398)
..++..|.+++..|+.||.++++++++||||+||+|||+++.| ++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 10 ~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~G 88 (522)
T TIGR02345 10 GTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVG 88 (522)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhC
Confidence 3457899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCcc---CHHHHHHHHHhhcccCccCCc
Q 015935 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGGD 167 (398)
Q Consensus 91 DGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~---~~~~l~~ia~t~l~sK~~~~~ 167 (398)
|||||+|+|+++||+++++|+++|+||+.|++||+.|.+.++++|+++ +++++.. +.+.+.++|+|+++||+.+.+
T Consensus 89 DGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~ 167 (522)
T TIGR02345 89 DGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI-AVTIDEVKGEQREVLEKCAATALNSKLIAHE 167 (522)
T ss_pred CCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcCCcccccHHHHHHHHHHHhccccccch
Confidence 999999999999999999999999999999999999999999999997 8888632 457899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCC---CCceecCceEEEEeecc
Q 015935 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFNL 244 (398)
Q Consensus 168 ~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~---~~~~~~~~kIlll~~~L 244 (398)
+++|++++++|+..+.+ + .+|+++|++++++|++++||++++|++|++++.+++ ||+.++||||++++++|
T Consensus 168 ~~~l~~l~~~A~~~v~~---~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~L 241 (522)
T TIGR02345 168 KEFFSKMIVDAVLQLDI---D---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVEL 241 (522)
T ss_pred HHHHHHHHHHHHHHHhh---c---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCc
Confidence 99999999999999842 1 467789999999999999999999999999988775 48899999999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHH
Q 015935 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 245 ~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
++++++.+..+.+++++++.++.+.|+++++++++++.+.|+++|+|+++|++.+++||.+++|++++++++++++++|+
T Consensus 242 e~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~ 321 (522)
T TIGR02345 242 ELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVK 321 (522)
T ss_pred ccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 325 ~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+|||+++++++++ ++.++|+|+.|+++++++++|++|+||+.+.+|||++||++
T Consensus 322 ~tga~ii~~~~~l------~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t 375 (522)
T TIGR02345 322 ACGGSIQSTTSDL------EADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGA 375 (522)
T ss_pred HhCCeEEcchhhC------ChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCC
Confidence 9999999998764 56789999999999999999999999999999999999987
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-71 Score=571.68 Aligned_cols=359 Identities=35% Similarity=0.546 Sum_probs=338.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCC--CCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcc
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDI--GDVTITNDGATILKMLEVEHPAAKVLVELAELQDRE 88 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~--g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 88 (398)
..+..+|.+++..|+.|+.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++||++
T Consensus 6 ~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~ 85 (519)
T TIGR02341 6 NAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDE 85 (519)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhh
Confidence 346788999999999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCcc---CHHHHHHHHHhhcccCccC
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIG 165 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~---~~~~l~~ia~t~l~sK~~~ 165 (398)
+||||||+|+|+++||+++++|+++|+||+.|++||+.|++.++++|+++ +++++.. +.+.|.++|+|+++||+.+
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~L~~ia~t~l~ski~~ 164 (519)
T TIGR02341 86 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKS-SIDNGSDKTKFRDDLLNIARTTLSSKILS 164 (519)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-cccccCcccccHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999997 8887532 3678999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccc
Q 015935 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245 (398)
Q Consensus 166 ~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~ 245 (398)
.+.+.|++++++|+..+.. ..+.++|++.+++|+++++|++++|+++++.+.+ .||++++||||++++++|+
T Consensus 165 ~~~~~~s~l~~~av~~i~~-------~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 165 QHKDHFAQLAVDAVLRLKG-------SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hHHHHHHHHHHHHHHHhcc-------CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCC
Confidence 9999999999999988832 1245779999999999999999999999998865 6799999999999999999
Q ss_pred cccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHH
Q 015935 246 KTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 246 ~~k~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
+++++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.+++|++++++++.+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999986 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 325 ~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+|||+++++++++ ++.++|+|+.|+++.+|+++|++|+||+.+.+|||++||++
T Consensus 317 ~tGa~ii~~~~~~------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t 370 (519)
T TIGR02341 317 VTGGEIVSTFDHP------ELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGAT 370 (519)
T ss_pred HhCCEEecccccC------CccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCC
Confidence 9999999998764 56789999999999999999999999999999999999987
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-70 Score=566.00 Aligned_cols=359 Identities=32% Similarity=0.518 Sum_probs=335.4
Q ss_pred cccccH-HHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 13 ERQAGQ-DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 13 ~~~~g~-~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
+..+|. +++..|+.||.++++++++||||+||+|||++++|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus 11 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GD 90 (531)
T TIGR02346 11 RHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGD 90 (531)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCC
Confidence 456665 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcc-cCCc-cCHHHHHHHHHhhcccCccCCchH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAV-KVEK-LGKDSLVNCAKTSMSSKLIGGDSD 169 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~-~~~~-~~~~~l~~ia~t~l~sK~~~~~~~ 169 (398)
||||+|+|+++||+++++++++|+||..|++||+.|++.++++|+++ ++ ++++ .+.+.+.++++|+++||+.+. ++
T Consensus 91 GTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~ 168 (531)
T TIGR02346 91 GTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEEL-VVWEVEDVRNKKELIKALKASISSKQYGN-ED 168 (531)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHhccccCch-HH
Confidence 99999999999999999999999999999999999999999999986 75 6633 357889999999999999988 99
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccccc
Q 015935 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (398)
Q Consensus 170 ~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~ 249 (398)
+|++++++|+..+.+ ++.-.+++++|++++++|+++++|++++|++|++++. .||+.++||||+++++|++++++
T Consensus 169 ~ls~l~~~Ai~~v~~---~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~ 243 (531)
T TIGR02346 169 FLAQLVAKACSTVMP---KNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATT 243 (531)
T ss_pred HHHHHHHHHHHHHhh---cCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcc
Confidence 999999999999853 2211467789999999999999999999999998854 47899999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 250 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
+.+.++.++++.++.++.+.|+++++++++++.+.|++||+++++|+|.+++||.++||+++++++..+|+|||.+|||+
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ 323 (531)
T TIGR02346 244 ETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGAT 323 (531)
T ss_pred cCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCC-CCCeEEEEcccce
Q 015935 330 MVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK-TTSAYIILGKVPS 384 (398)
Q Consensus 330 ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~til~~~~~ 384 (398)
++++++++ ++.++|+|+.|+++++|+++|.+|++|+ .+..|||++||++
T Consensus 324 ii~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t 373 (531)
T TIGR02346 324 PLARLGAP------QPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGST 373 (531)
T ss_pred EecccccC------CHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCC
Confidence 99998664 5678999999999999999999999998 5889999999998
No 18
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-73 Score=526.72 Aligned_cols=363 Identities=35% Similarity=0.553 Sum_probs=343.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
++.+.+++|.+||+|++++++.+||||||+||||||++++|+++|||||+|||+.|.+-||+++||++.+.+||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
|||||+|+|+||+.+..|+++|+||+.|...|+.|.+.++++|.++ +.|++-.|++.|.+.|.|+|+||+.|.++..++
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m-~~~velsdre~Li~~atTsLnSKvvSq~s~lla 178 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEM-SVPVELSDRESLIKSATTSLNSKVVSQYSSLLA 178 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhc-CCCcccCcHHHHHHHHHhHhhHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999997 999988889999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~ 252 (398)
+++++|+.++. ++....+.|+.+|++.|..||.++|+++++|++|++......-|+.++++||.++.|.++.||++..
T Consensus 179 pmAVdAV~kv~--dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 179 PMAVDAVLKVI--DPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred hHHHHHHHhcc--CcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcc
Confidence 99999999885 3333456788999999999999999999999999988877668999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCC-----CHHHHHHHHHcCCeEEeeCChHHHHHHHHHhC
Q 015935 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKATG 327 (398)
Q Consensus 253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~L~~la~~tG 327 (398)
.++.++++.+++.++++|++|+.+++++|++.|+||++.|++| +|.++|||.+-+|+|++.+.++|+|.+|+.+|
T Consensus 257 n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~ 336 (534)
T KOG0358|consen 257 NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLG 336 (534)
T ss_pred cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CeEccccccccCCcCCCCCCcceeeeEEEEEE-cCeeEEEEecCCC-CCeEEEEcccce
Q 015935 328 ATMVSTFADMEGEETFDSSLLGSADEVVEERV-ADDDVIMIKGTKT-TSAYIILGKVPS 384 (398)
Q Consensus 328 a~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~i-g~~~~~~~~g~~~-~~~~til~~~~~ 384 (398)
++|+.+++. |++..+|+++-+++..- |+.+++.++|+++ ..+|+|+.||++
T Consensus 337 c~Pia~id~------f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn 389 (534)
T KOG0358|consen 337 CKPIADIDH------FTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSN 389 (534)
T ss_pred Ceecchhhh------cChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCc
Confidence 999999854 78899999999999744 5669999999998 579999999988
No 19
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-72 Score=536.08 Aligned_cols=383 Identities=68% Similarity=0.967 Sum_probs=371.6
Q ss_pred CccccccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHH
Q 015935 1 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVE 80 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~ 80 (398)
|.++..|++.-+++..|+.+|.+|..|+.++++++++||||-|+|||++++.|++.+||||+|||+.+.++||++++|++
T Consensus 1 ~~~~~~~~~~~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLve 80 (545)
T KOG0360|consen 1 RLEAKKPLLCKGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVE 80 (545)
T ss_pred CCcccCCccccCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHH
Confidence 35667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcc
Q 015935 81 LAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMS 160 (398)
Q Consensus 81 ~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~ 160 (398)
.++.|++++|||||++++++++|++++.+|...++||+.+++||+.|+..+++++.+-++++++.+.+..|.++++|+++
T Consensus 81 laq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsms 160 (545)
T KOG0360|consen 81 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMS 160 (545)
T ss_pred HHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999998877889999899999999999999
Q ss_pred cCccCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEE
Q 015935 161 SKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240 (398)
Q Consensus 161 sK~~~~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll 240 (398)
||+++...++|++++++|++.++..+.+|...++++.++|.|-+|++..||.+++|+.+++..++..||..++++||+++
T Consensus 161 SK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacl 240 (545)
T KOG0360|consen 161 SKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACL 240 (545)
T ss_pred ceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeE
Confidence 99999999999999999999987666678778899999999999999999999999999999999999999999999999
Q ss_pred eecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHH
Q 015935 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMR 320 (398)
Q Consensus 241 ~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~ 320 (398)
++.|+..+++....+.+.++++++++.+.|....++.+++|...|+|||+++++|||.+++||.++|+++++|+.+++|+
T Consensus 241 d~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk 320 (545)
T KOG0360|consen 241 DFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLK 320 (545)
T ss_pred ecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 321 HIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 321 ~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+|+++||+++++++.+++.++.|++..+|+|+.|.+.+|++++++.+.|.+.. +|+|++||++
T Consensus 321 ~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaN 383 (545)
T KOG0360|consen 321 RIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGAN 383 (545)
T ss_pred HHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999888 9999999987
No 20
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-69 Score=553.36 Aligned_cols=333 Identities=30% Similarity=0.486 Sum_probs=314.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
.++..|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||
T Consensus 5 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GD 84 (484)
T cd03342 5 AEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGD 84 (484)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCc-cCHHHHHHHHHhhcccCccCCchHH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK-LGKDSLVNCAKTSMSSKLIGGDSDF 170 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~-~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (398)
||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|+++ +.+++. .+++.+.++|+|+++||+.+.+.+.
T Consensus 85 GTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~ 163 (484)
T cd03342 85 GTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESF-KVPVEIDTDRELLLSVARTSLRTKLHADLADQ 163 (484)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHHHHHHhCcccchhHHHH
Confidence 99999999999999999999999999999999999999999999997 888853 3688999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccc
Q 015935 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (398)
Q Consensus 171 ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~ 250 (398)
|++++++|+..+.+ ++. .+|+++|++++++|+++++|++++|++|++++.+++||++++||||++++++|++++++
T Consensus 164 l~~l~~~A~~~v~~---~~~-~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~ 239 (484)
T cd03342 164 LTEIVVDAVLAIYK---PDE-PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTE 239 (484)
T ss_pred HHHHHHHHHHHHhh---cCC-ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccc
Confidence 99999999999853 232 57788999999999999999999999999999999999999999999999999999888
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 251 ~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
.+.++.++ ||+|+++|+|.+++||.++||++++++++++|+|||++|||++
T Consensus 240 ~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~i 290 (484)
T cd03342 240 VNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVA 290 (484)
T ss_pred cCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEE
Confidence 77666543 9999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 331 VSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 331 i~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++++ ++.++|+|+.|+++.+|+++|++|+||+.+..|||++||++
T Consensus 291 i~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t 338 (484)
T cd03342 291 MNSVDDL------SPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPN 338 (484)
T ss_pred ecccccC------ChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCC
Confidence 9998764 66789999999999999999999999999999999999998
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.9e-69 Score=548.42 Aligned_cols=326 Identities=35% Similarity=0.547 Sum_probs=304.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccC
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 90 (398)
..++..|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~G 87 (480)
T cd03337 8 NTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVG 87 (480)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHH
Q 015935 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDF 170 (398)
Q Consensus 91 DGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (398)
|||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+++.|.++++|+++||+.+.|.+.
T Consensus 88 DGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ 166 (480)
T cd03337 88 DGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEI-SIPVDVNDRAQMLKIIKSCIGTKFVSRWSDL 166 (480)
T ss_pred CCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccccCCHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999997 8888766889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccccccc
Q 015935 171 FANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (398)
Q Consensus 171 ls~l~~~av~~v~~~~~~g~~~~~~~-~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~ 249 (398)
|++++++|+..+.+.....+..+|++ +|++++++|++++||++++|++|++++.+++||++++||||++++++|++
T Consensus 167 ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~--- 243 (480)
T cd03337 167 MCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY--- 243 (480)
T ss_pred HHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce---
Confidence 99999999999854221111234444 59999999999999999999999999999999999999999999999975
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 250 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
||+++++|+|.+++||.++||++++++++++|+|||++|||+
T Consensus 244 --------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ 285 (480)
T cd03337 244 --------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGAT 285 (480)
T ss_pred --------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCE
Confidence 999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcce-eeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 330 MVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 330 ii~~~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++++++++ +++++|+ |+.++++++++++|++|+||+.+.+|||++||++
T Consensus 286 ii~~~~~l------~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t 335 (480)
T cd03337 286 IVNRPEEL------TESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGAS 335 (480)
T ss_pred EecchhhC------CHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCC
Confidence 99998664 5678999 6788888899999999999999999999999987
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.3e-65 Score=522.70 Aligned_cols=319 Identities=47% Similarity=0.680 Sum_probs=303.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCCh
Q 015935 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGT 93 (398)
Q Consensus 14 ~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (398)
..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHHH
Q 015935 94 TSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (398)
Q Consensus 94 ts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~ 173 (398)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|+++ +.+++..+++.+.++++|+++||+.+.|++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEI-AVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999997 8886656789999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccce
Q 015935 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253 (398)
Q Consensus 174 l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~~ 253 (398)
++++|++.+.+.. + .++.+.|+|++.+|+++.||++++|++|++++.++.|++.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~--~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------- 230 (464)
T cd00309 162 LVVDAVLKVGKEN--G--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------- 230 (464)
T ss_pred HHHHHHHHhcccc--C--ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------
Confidence 9999999985321 1 5677899999999999999999999999999999999999999999999999985
Q ss_pred EEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEccc
Q 015935 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333 (398)
Q Consensus 254 ~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~~ 333 (398)
||+++++|++.+++||.++||++++++++++|+|||++|||+++++
T Consensus 231 ----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~ 276 (464)
T cd00309 231 ----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSR 276 (464)
T ss_pred ----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecc
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred cccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 334 FADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 334 ~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++++ ++..+|+|+.|+++++|+++|++|++|+.+.+|||++||++
T Consensus 277 ~~~~------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t 321 (464)
T cd00309 277 LEDL------TPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGAT 321 (464)
T ss_pred cccC------CcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCc
Confidence 7654 66789999999999999999999999999999999999998
No 23
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-65 Score=518.68 Aligned_cols=357 Identities=39% Similarity=0.562 Sum_probs=336.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCC
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 91 (398)
+++.+|.+++..|+.|+..+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.|+|++++|++||+++||
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GD 83 (524)
T COG0459 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGD 83 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHH
Q 015935 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (398)
Q Consensus 92 Gtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l 171 (398)
||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++. +++++..+.+. +++.|+++||..+++ +.+
T Consensus 84 GTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~-a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i 159 (524)
T COG0459 84 GTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEI-AKPVSDSEEEL--KIAITSVASKSANSD-EEI 159 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhhh--hhhhheeeeeeccCh-HHH
Confidence 99999999999999999999999999999999999999999999998 88887644444 899999999998877 999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcc-cccCCCCC-ceecCceEEEEeeccccccc
Q 015935 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNA-FRAAQGMP-LRVAPAKIACLDFNLQKTKM 249 (398)
Q Consensus 172 s~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~-~~~~~~~~-~~~~~~kIlll~~~L~~~k~ 249 (398)
++++++|+..+... . .|.+.|.+.+..|++..++++++|++|++ ..+|+.|| +.++||||++++++|++.++
T Consensus 160 ~~lv~~Av~~v~~~---~---~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 160 GELVVEAVEKVGKE---Q---SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred HHHHHHHHHHhccc---c---cccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccc
Confidence 99999999998431 1 16789999999999999999999999999 66788899 89999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHHCCCe-EEEeCCCCCHHHHHHHHHcCCeEEeeCChHHH-HHHHHHh
Q 015935 250 QLGVQVLVTDPRELEKIRQREA-DMTKERIEKLLKAGAN-VILTTKGIDDMALKYFVEAGAIAVRRVRKEDM-RHIAKAT 326 (398)
Q Consensus 250 ~~~~~v~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~gv~-lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L-~~la~~t 326 (398)
+.+.++.++++.++..|.++|+ +.+..+++++.+.|+| +++++++|+|.+++||.+.+|++++++.++++ +++++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999999 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeEccccccccCCcCCCCCCcce--eeeEEEEEEcCeeEEEEecCCC--CCeEEEEcccce
Q 015935 327 GATMVSTFADMEGEETFDSSLLGS--ADEVVEERVADDDVIMIKGTKT--TSAYIILGKVPS 384 (398)
Q Consensus 327 Ga~ii~~~~~l~~~~~~~~~~lG~--~~~v~~~~ig~~~~~~~~g~~~--~~~~til~~~~~ 384 (398)
||++++...++ ++..+|. |+.+++.+++++++.+|++|+. +++|||++||++
T Consensus 314 ga~~v~~~~d~------t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgat 369 (524)
T COG0459 314 GAKIVSVLKDL------TTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGAT 369 (524)
T ss_pred CceEEeecccC------ceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCcc
Confidence 99999988764 6678999 9999999999999999999996 889999999987
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-65 Score=516.93 Aligned_cols=319 Identities=32% Similarity=0.535 Sum_probs=295.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCChh
Q 015935 15 QAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTT 94 (398)
Q Consensus 15 ~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 94 (398)
..+.+++..|++||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhccc-CC-ccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 95 SVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVK-VE-KLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 95 s~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~-~~-~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
|+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +.+ ++ ..+.+.+.++++|+++||..+ ++++++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~ 161 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEEL-VVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLS 161 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCHHHHHHHHHHHhcccccc-hHHHHH
Confidence 99999999999999999999999999999999999999999997 654 43 346788999999999999987 689999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~ 252 (398)
+++++|+..+.+. ..| .+++++|+|++++|++++||++++|++|++.+. +++++++||||++++++|++
T Consensus 162 ~l~~~a~~~~~~~-~~~--~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~------ 230 (472)
T cd03341 162 PLVAEACISVLPE-NIG--NFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI------ 230 (472)
T ss_pred HHHHHHHHHHhhc-cCC--cCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC------
Confidence 9999999998532 113 467789999999999999999999999987654 35688999999999999985
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~ 332 (398)
|++||+++++|+|.+++||.++||++++++++++|+|||++|||++++
T Consensus 231 --------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~ 278 (472)
T cd03341 231 --------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLP 278 (472)
T ss_pred --------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 899999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCC-CCeEEEEcccce
Q 015935 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKT-TSAYIILGKVPS 384 (398)
Q Consensus 333 ~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~til~~~~~ 384 (398)
+++++ +++++|+|+.|+++++|+++|++|++|+. +.+|||++||++
T Consensus 279 ~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t 325 (472)
T cd03341 279 RLGAP------TPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGAT 325 (472)
T ss_pred ccccC------CHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCC
Confidence 98654 66789999999999999999999999988 899999999987
No 25
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-66 Score=479.10 Aligned_cols=359 Identities=35% Similarity=0.563 Sum_probs=335.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecC--CCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcc
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDRE 88 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~--~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~ 88 (398)
.+..++|+.++.+.+.++..++++++|||||+||+|+++.. .|.+.+||||+|||+++.+.+|+||+|++.++-||++
T Consensus 10 ~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~E 89 (527)
T KOG0363|consen 10 GATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDE 89 (527)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheeccccccccc
Confidence 44678999999999999999999999999999999999975 4779999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCc---cCHHHHHHHHHhhcccCccC
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK---LGKDSLVNCAKTSMSSKLIG 165 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~---~~~~~l~~ia~t~l~sK~~~ 165 (398)
+|||||||.+|+++||++|.+|+...+||..|+.|||.|.+.|.+.|.+. ++.-.. .-++.|+++|+|.|+||+.+
T Consensus 90 vGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~-s~dns~~~~kfr~DLl~iarTTL~SKiLs 168 (527)
T KOG0363|consen 90 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKS-SIDNSSDKEKFREDLLKIARTTLSSKILS 168 (527)
T ss_pred cCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHh-hhhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876 443221 11688999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccc
Q 015935 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245 (398)
Q Consensus 166 ~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~ 245 (398)
.+.++|++|+++|+.+++. +-+++.|+|+|+.||+++||++-+|+++++.+. -+.|+.++|+||++-|.+++
T Consensus 169 q~kehFaelavdAV~rLkG-------s~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~ig-v~qpkriena~iLIANT~mD 240 (527)
T KOG0363|consen 169 QDKEHFAELAVDAVLRLKG-------STNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIG-VNQPKRIENAKILIANTPMD 240 (527)
T ss_pred hhHHHHHHHHHHHHHHhcC-------CCCccceeeehhcCCccccccccccceeccccC-CCCcccccccceEEecCCCc
Confidence 9999999999999999863 235789999999999999999999999998876 36789999999999999999
Q ss_pred cccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHH
Q 015935 246 KTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 246 ~~k~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
..|.+. .+.+.+.+...+.++..+|++.++.++++|.++|+|+.+...-|.++-.|+|...||++++..+.+-+||++.
T Consensus 241 tDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLal 320 (527)
T KOG0363|consen 241 TDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLAL 320 (527)
T ss_pred ccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhh
Confidence 999885 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 325 ~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
.||+.++++++.+ +..++|+|+.+++.-+|+++++.|+||+...+|||++||++
T Consensus 321 vtGGeI~STFd~p------~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat 374 (527)
T KOG0363|consen 321 VTGGEIVSTFDNP------ELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGAT 374 (527)
T ss_pred cccceeeeccCCc------chhccccchhhHHHhcCccceeeecccccccceEEEEeccc
Confidence 9999999999875 56789999999999999999999999999999999999987
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.1e-64 Score=519.61 Aligned_cols=338 Identities=39% Similarity=0.644 Sum_probs=319.6
Q ss_pred HHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHHHHHH
Q 015935 31 VANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDL 110 (398)
Q Consensus 31 la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 110 (398)
|++++++||||+|++|||++++|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHHHHHHHHHHHhhcccCCCC
Q 015935 111 VRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGE 190 (398)
Q Consensus 111 i~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~l~~~av~~v~~~~~~g~ 190 (398)
+++|+||..|++||+.|++.++++|++. +++++..+ +.+.++++|++++|+.+.|.+++++++++|++.+..
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~-s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~------ 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKI-SIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS------ 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHH-SEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT------
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhh-hccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc------
Confidence 9999999999999999999999999997 88887422 899999999999999999999999999999944421
Q ss_pred ccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccceEEEEcCHHHHHHHHHHH
Q 015935 191 VKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQRE 270 (398)
Q Consensus 191 ~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E 270 (398)
.+++++++++++.|++++||++++|++|++++.+++||+++++|||++++++|+++++ .+.++.+++.++++.+.++|
T Consensus 153 -~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 153 -NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp -THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred -cccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 1667789999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEccccccccCCcCCCCCCcce
Q 015935 271 ADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGS 350 (398)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~ 350 (398)
+++++++++++.+.|+++|+++++|++.++++|.++||++++++++++|++||++|||+++++++++ +++++|+
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l------~~~~lG~ 304 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDL------SDEDLGF 304 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGS------TGGGSEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccc------cchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999765 5567999
Q ss_pred eeeEEEEEEcCeeEEEEe--cCCCCCeEEEEcccce
Q 015935 351 ADEVVEERVADDDVIMIK--GTKTTSAYIILGKVPS 384 (398)
Q Consensus 351 ~~~v~~~~ig~~~~~~~~--g~~~~~~~til~~~~~ 384 (398)
|++++++.+++++|++|+ +|..+..|||+++|++
T Consensus 305 ~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t 340 (485)
T PF00118_consen 305 CKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPT 340 (485)
T ss_dssp EEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESS
T ss_pred hhhhhhcccccccccccccccccccCceEEEecccc
Confidence 999999999999999999 6999999999999987
No 27
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-67 Score=493.68 Aligned_cols=365 Identities=31% Similarity=0.489 Sum_probs=347.8
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhccc
Q 015935 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (398)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~ 89 (398)
.+..|+.|..++..|++|++++||++|+|+||+.|.||+.++.|.+..||||..||+++++.||+|+-+.+.+.+||+++
T Consensus 10 ~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeev 89 (527)
T KOG0364|consen 10 KNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEV 89 (527)
T ss_pred cccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchH
Q 015935 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (398)
Q Consensus 90 GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~ 169 (398)
|||||||++|++++|.++..++++|+||..|+++|.+|+..++..++.+ +.++|..|...+..+.++++.+|+.++|++
T Consensus 90 gdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~-~~~~d~~~~~km~~vi~~~v~tk~~~~~~~ 168 (527)
T KOG0364|consen 90 GDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKI-SIPVDVKDQAKMLRVINSSVGTKFNSRWSD 168 (527)
T ss_pred cCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhh-cccCCcccHHHHHhhhhhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999987 899998889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccC-CceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccc
Q 015935 170 FFANLVVEAVQAVKMTNQRGEVKYPI-KGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTK 248 (398)
Q Consensus 170 ~ls~l~~~av~~v~~~~~~g~~~~~~-~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k 248 (398)
...+++.+|+..+... +|. .+|+ ++.++.|++||.+.+|++++|+.++++..||.|++.++||||+++||+|+|.|
T Consensus 169 ~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Leykk 245 (527)
T KOG0364|consen 169 LICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKK 245 (527)
T ss_pred hhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCC
Confidence 9999999999998642 343 3444 58899999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCC
Q 015935 249 MQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (398)
Q Consensus 249 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa 328 (398)
.++.+.+.+.-.+++..+++-|++++..+++.|....++||++.++++|.+++||.++||++++++++.|-.|++++|||
T Consensus 246 GeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga 325 (527)
T KOG0364|consen 246 GESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGA 325 (527)
T ss_pred CccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccccccccCCcCCCCCCcce-eeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 329 TMVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 329 ~ii~~~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
+++++.++ |.+.+.|+ |+-|+..++|+++|+||..|+.|++||||+|||+
T Consensus 326 ~iv~rped------l~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~s 376 (527)
T KOG0364|consen 326 RIVNRPED------LPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPS 376 (527)
T ss_pred eeccChhh------CchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCc
Confidence 99999876 47778995 7799999999999999999999999999999997
No 28
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-61 Score=466.18 Aligned_cols=362 Identities=27% Similarity=0.439 Sum_probs=328.0
Q ss_pred cccccccc-cccH-HHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHh
Q 015935 7 TLDILGER-QAGQ-DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAEL 84 (398)
Q Consensus 7 ~~~~~~~~-~~g~-~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~ 84 (398)
.|+.++.+ .+|. ++...|++||+++++++||+|||+||+||++|..|++.+|||++||+++++++||+++|++++++.
T Consensus 12 q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~ 91 (537)
T KOG0362|consen 12 QMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQM 91 (537)
T ss_pred hHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666664 5555 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCcc
Q 015935 85 QDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLI 164 (398)
Q Consensus 85 ~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~ 164 (398)
|+++.||||++||+|+++||++|.+|+..|++|..|++||+.|.+.+++.|+++...... |.+.-..++++++.||.+
T Consensus 92 q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~~~~rs~i~skq~ 169 (537)
T KOG0362|consen 92 QEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKEWALRSVIMSKQY 169 (537)
T ss_pred HHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999997332322 222223888999999987
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecc
Q 015935 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (398)
Q Consensus 165 ~~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L 244 (398)
.+ .+++++++++|...+.+. + .|+.++|+++|+.|+++++|+++.|++|++.+.. .+++-++.||++++||+
T Consensus 170 ~~-ed~l~~lVa~ac~si~p~---~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG--~v~~ak~arvAvf~cP~ 241 (537)
T KOG0362|consen 170 GN-EDFLTKLVAKACVSILPL---M--SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEG--EVKSAKDARVAVFACPF 241 (537)
T ss_pred ch-HHHHHHHHHHHHHhhccc---c--cccccceEEEEEecCCcccceeeEEEEeccccCC--cccccccceeEEEecCC
Confidence 64 689999999999998653 2 3889999999999999999999999999988753 44777899999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHH
Q 015935 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 245 ~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
+...+++++++.+++++++.+|.+.|++.++..++.|...|+++|++.+.+++.+++||++.+|++++.-++.||+|+|+
T Consensus 242 d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcr 321 (537)
T KOG0362|consen 242 DIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCR 321 (537)
T ss_pred CcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCC-CCCeEEEEcccce
Q 015935 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK-TTSAYIILGKVPS 384 (398)
Q Consensus 325 ~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~til~~~~~ 384 (398)
..||++++++..+ .+..+|+|++|..+++|+..++.|.... -....||.+||.+
T Consensus 322 tvGA~~l~rl~~P------~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst 376 (537)
T KOG0362|consen 322 TVGATALPRLFPP------APEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGAT 376 (537)
T ss_pred HcCCccchhccCC------CCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccc
Confidence 9999999999875 4567999999999999999999998644 5567778888875
No 29
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-62 Score=459.36 Aligned_cols=358 Identities=28% Similarity=0.462 Sum_probs=338.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
+..+-..+...|++++..+.+++++.+||.|..||++++.|++.+|.||.+++++|+++||.+-++..++.+||+..|||
T Consensus 11 Ev~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDG 90 (520)
T KOG0359|consen 11 EVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDG 90 (520)
T ss_pred HHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCC
Confidence 44455567778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
||++|+|+|+++++|..++..|+||..|.+||+.|.+.++++|+.. +.++ +++.|..+++|++.+|....-.+.++
T Consensus 91 ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~-~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt 166 (520)
T KOG0359|consen 91 TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKV-SREV---DRETLKDVARTSLRTKVHAELADVLT 166 (520)
T ss_pred cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhcc-ccch---hHHHHHHHHHHhhcCcccHHHHhHhH
Confidence 9999999999999999999999999999999999999999999965 6665 59999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~ 252 (398)
+++++|++.+... .-.+|+.++++.++..++..|+.+++|++++++..|+.||+.++|+.|+++|.+|||+|++.|
T Consensus 167 ~~vv~aVl~i~~~----~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Ein 242 (520)
T KOG0359|consen 167 PIVVDSVLCIRRQ----EEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEIN 242 (520)
T ss_pred HHHHhhheeeccC----CCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccc
Confidence 9999999887521 124788899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCe----EEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCC
Q 015935 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGAN----VILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (398)
Q Consensus 253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~----lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa 328 (398)
+.+.|++.+|.+.+...|++++.+.+++|.+++.. ||+.|++|||..++.|+++||++++|.++..|||+..+||+
T Consensus 243 sgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG 322 (520)
T KOG0359|consen 243 SGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGG 322 (520)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999754 78999999999999999999999999999999999999999
Q ss_pred eEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccce
Q 015935 329 TMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 329 ~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
..++++++ ++|+++|+|+.|++.++|+++|+|+++|++|.+||||++||+
T Consensus 323 ~a~nsvdd------Ltp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpn 372 (520)
T KOG0359|consen 323 EAVNSVDD------LTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPN 372 (520)
T ss_pred ceeccccc------CChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCc
Confidence 99999976 588999999999999999999999999999999999999997
No 30
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.6e-59 Score=477.30 Aligned_cols=312 Identities=22% Similarity=0.309 Sum_probs=274.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (398)
...+|.+++..|++++..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++ +++++ +.+.+.++|+|+. +++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~~~--~~~~l~~va~ts~------~~~ 154 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKAL-ARPVS--GSEEIAQVATISA------NGD 154 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------CCh
Confidence 99999999999999999999999999999999999999999999999997 88886 6778999999885 368
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCccc-ceeeeeEEEcccccCCCC-------CceecCceEEEE
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~d-S~li~G~vl~~~~~~~~~-------~~~~~~~kIlll 240 (398)
+++++++++|+..+. .+|. + .+ ..|++.+| +++++|++|++++.+++| ++.++||+|+++
T Consensus 155 ~~l~~lv~~Av~~v~---~~g~--i-----~i--~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~ 222 (542)
T PRK12849 155 EEIGELIAEAMEKVG---KDGV--I-----TV--EESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLT 222 (542)
T ss_pred HHHHHHHHHHHHHhc---cCCc--E-----eE--EeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEee
Confidence 999999999999883 3332 2 22 27888875 899999999999998854 788999999999
Q ss_pred eecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHc------CCeEEeeC
Q 015935 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRV 314 (398)
Q Consensus 241 ~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~------~I~vv~~v 314 (398)
++.++ ++++ +.++++++.+.|++|||++++|+|.++++|.++ +|++++++
T Consensus 223 d~~i~-------------~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~ 278 (542)
T PRK12849 223 DKKIS-------------SLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAP 278 (542)
T ss_pred cCCcC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCC
Confidence 99653 2332 456789999999999999999999999999999 99999987
Q ss_pred C-----hHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCC
Q 015935 315 R-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (398)
Q Consensus 315 ~-----~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~ 373 (398)
+ +++|+|||++|||+++++...++. +++++.++|+|+.|++. +++|++|+||+.+
T Consensus 279 ~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~-~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~ 338 (542)
T PRK12849 279 GFGDRRKAMLEDIAILTGGTVISEDLGLKL-EEVTLDDLGRAKRVTIT---KDNTTIVDGAGDK 338 (542)
T ss_pred CccchhHhHHHHHHHHhCCEEecccccCCc-ccCCHHHCceeeEEEEe---eeeEEEEeCCCCH
Confidence 7 566999999999999995322111 23567789999999974 4899999999876
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1e-58 Score=476.31 Aligned_cols=309 Identities=24% Similarity=0.367 Sum_probs=278.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (398)
...+|.+++..|++|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4578999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|+++ +++++ +.+.+.++|+|++ +++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~~~--~~~~l~~va~ts~------~~~ 154 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKI-SKPVE--DKEEIAQVATISA------NGD 154 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHhcc------cch
Confidence 99999999999999999999999999999999999999999999999997 88886 6888999999875 368
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCC-------CceecCceEEEEe
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~-------~~~~~~~kIlll~ 241 (398)
+.+++++++|+..+. .+| .|.+.+.+| ...+|++++|++|++++.+++| ++.++||+|+++|
T Consensus 155 ~~ls~lv~~Av~~v~---~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d 223 (542)
T PRK00013 155 EEIGKLIAEAMEKVG---KEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITD 223 (542)
T ss_pred HHHHHHHHHHHHHhC---cCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEc
Confidence 999999999999873 223 266776777 7889999999999999998865 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcC------CeEEeeCC
Q 015935 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVRRVR 315 (398)
Q Consensus 242 ~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~------I~vv~~v~ 315 (398)
+.++ ++++ +.++++++.+.|++|||++++|++.++++|.+++ |+++++++
T Consensus 224 ~~i~-------------~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~ 279 (542)
T PRK00013 224 KKIS-------------NIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPG 279 (542)
T ss_pred CccC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCC
Confidence 9653 3333 4577899999999999999999999999999997 99999876
Q ss_pred -----hHHHHHHHHHhCCeEcc-----ccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCC
Q 015935 316 -----KEDMRHIAKATGATMVS-----TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (398)
Q Consensus 316 -----~~~L~~la~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~ 374 (398)
+++|+|||++|||++++ ++++ ++++++|+|+.|++. .++|++|+||+.+.
T Consensus 280 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~------~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~ 339 (542)
T PRK00013 280 FGDRRKAMLEDIAILTGGTVISEELGLKLED------ATLEDLGQAKKVVVT---KDNTTIVDGAGDKE 339 (542)
T ss_pred cccchhhhHHHHHHHcCCEEecccccCCccc------CCHHHCCeeeEEEEe---cCEEEEEeCCCCHH
Confidence 89999999999999999 4544 467789999999975 48999999998876
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.4e-58 Score=477.42 Aligned_cols=325 Identities=23% Similarity=0.362 Sum_probs=290.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhh
Q 015935 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQD 86 (398)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~ 86 (398)
-++..+|.+++..|++++..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+
T Consensus 14 ~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd 93 (555)
T PTZ00114 14 GKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTN 93 (555)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhc
Confidence 346788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCC
Q 015935 87 REVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGG 166 (398)
Q Consensus 87 ~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~ 166 (398)
+++||||||+++|+++||+++.++++.|+||..|++||+.|.+.++++|+++ +.+++ +.+.+.++|+|+++
T Consensus 94 ~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~v~--~~~~l~~va~ts~~------ 164 (555)
T PTZ00114 94 DKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ-SRPVK--TKEDILNVATISAN------ 164 (555)
T ss_pred cccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHHcC------
Confidence 9999999999999999999999999999999999999999999999999997 88886 67889999999864
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeeeeEEEcccccCCCC-------CceecCceEE
Q 015935 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQGM-------PLRVAPAKIA 238 (398)
Q Consensus 167 ~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS-~li~G~vl~~~~~~~~~-------~~~~~~~kIl 238 (398)
.++.+++++++|+..+. .+| .|.+.+|+++++| ++++|++|++++.+++| ++.+++|+|+
T Consensus 165 ~~~~l~~li~eAv~~vg---~~g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il 232 (555)
T PTZ00114 165 GDVEIGSLIADAMDKVG---KDG---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLIL 232 (555)
T ss_pred ChHHHHHHHHHHHHHhC---cCC---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEE
Confidence 37899999999999883 223 1556799999998 89999999999998875 7889999999
Q ss_pred EEeecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcC------CeEEe
Q 015935 239 CLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVR 312 (398)
Q Consensus 239 ll~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~------I~vv~ 312 (398)
++|++|+. ++ .+.++++++.+.|++|+|++++|++.++++|..++ |++++
T Consensus 233 i~d~~L~~-------------~~-----------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk 288 (555)
T PTZ00114 233 VTDKKISS-------------IQ-----------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVK 288 (555)
T ss_pred EEcCCCCC-------------HH-----------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEe
Confidence 99999872 22 36677899999999999999999999999999996 99998
Q ss_pred e-----CChHHHHHHHHHhCCeEcccc-ccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCC---------------
Q 015935 313 R-----VRKEDMRHIAKATGATMVSTF-ADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK--------------- 371 (398)
Q Consensus 313 ~-----v~~~~L~~la~~tGa~ii~~~-~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~--------------- 371 (398)
+ +++++|+|||.+|||+++++. ....+ +++++.++|+|++|++++ +++++|+||.
T Consensus 289 ~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l-~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~ 364 (555)
T PTZ00114 289 APGFGDNRKDILQDIAVLTGATVVSEDNVGLKL-DDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQ 364 (555)
T ss_pred cCCCCcchHHHHHHHHHHhCCEEecccccccCc-ccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHH
Confidence 7 778999999999999999997 22222 235677899999999877 5677777776
Q ss_pred --------------------CCCeEEEEcccce
Q 015935 372 --------------------TTSAYIILGKVPS 384 (398)
Q Consensus 372 --------------------~~~~~til~~~~~ 384 (398)
.++.|||+++|++
T Consensus 365 ~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t 397 (555)
T PTZ00114 365 IERTTSEYDKEKLKERLAKLSGGVAVIKVGGAS 397 (555)
T ss_pred HHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 6789999999987
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.3e-58 Score=474.42 Aligned_cols=311 Identities=25% Similarity=0.366 Sum_probs=275.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhhccc
Q 015935 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (398)
Q Consensus 14 ~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~~ 89 (398)
..+|.+++..|++++..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 467899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchH
Q 015935 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (398)
Q Consensus 90 GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~ 169 (398)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.+.++|+|++++ ++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~-~~~i~--~~~~l~~va~ts~~~------~~ 153 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKL-SKPVK--TKEEIAQVATISANG------DE 153 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcCC------hH
Confidence 9999999999999999999999999999999999999999999999997 88886 688999999999853 89
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCccc-ceeeeeEEEcccccCCCC---C----ceecCceEEEEe
Q 015935 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM---P----LRVAPAKIACLD 241 (398)
Q Consensus 170 ~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~d-S~li~G~vl~~~~~~~~~---~----~~~~~~kIlll~ 241 (398)
.+++++++|+..+. .+|. |.+ .+|++.+| +++++|++|++++.+++| | +.++||+|++++
T Consensus 154 ~l~~lv~~A~~~v~---~~~~-------i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 154 EIGELIAEAMEKVG---KDGV-------ITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHHhc---cCCc-------EEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 99999999999873 2232 233 58999988 799999999999998875 3 578999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCC------eEEeeC-
Q 015935 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRRV- 314 (398)
Q Consensus 242 ~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I------~vv~~v- 314 (398)
++|+ ++++ +.++++++.+.|++|||++++|++.++++|.+++| +++++.
T Consensus 222 ~~l~-------------~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~ 277 (520)
T cd03344 222 KKIS-------------SIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPG 277 (520)
T ss_pred CCCC-------------CHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCC
Confidence 9964 2332 45678999999999999999999999999999998 898876
Q ss_pred ----ChHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCC
Q 015935 315 ----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (398)
Q Consensus 315 ----~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~ 373 (398)
++++|+|||++|||+++++....+. ++++++++|+|+.|++.+ ++|++|+||+.+
T Consensus 278 ~~~~~~~~l~~la~~tGa~~~~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~ 336 (520)
T cd03344 278 FGDRRKAMLEDIAILTGGTVISEELGLKL-EDVTLEDLGRAKKVVVTK---DDTTIIGGAGDK 336 (520)
T ss_pred CCcccHHHHHHHHHHhCCEEecccccCCc-ccCCHHHCCcceEEEEee---ceEEEEeCCCCH
Confidence 8999999999999999993321111 234667899999999865 889999999876
No 34
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.6e-58 Score=470.16 Aligned_cols=314 Identities=22% Similarity=0.343 Sum_probs=275.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcH----HHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~~ 88 (398)
...+|.+++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 45678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++ +.+++ +.+.|.++++++++ .+
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~~s~~------~~ 155 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKI-AKKVT--SSKEIAQVATISAN------GD 155 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcC------CH
Confidence 99999999999999999999999999999999999999999999999997 88886 67889999998864 37
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCC-------CceecCceEEEEe
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~-------~~~~~~~kIlll~ 241 (398)
+.+++++++|+..+. .+|. ++++. .+..| .++++++|++|++++.+++| ++.++||+|+++|
T Consensus 156 ~~l~~lv~eAv~~vg---~~g~--i~v~~---~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 156 ESIGEMIAEAMDKVG---KEGV--ITVEE---AKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHHhc---ccCc--eeeEE---ccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 999999999999883 3343 22222 22333 68999999999999998875 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCC------eEEee--
Q 015935 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRR-- 313 (398)
Q Consensus 242 ~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I------~vv~~-- 313 (398)
+.++ +. +.+.++++++.+.|++|||++++|+|.++++|.+++| +++++
T Consensus 225 ~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~ 280 (544)
T PRK12850 225 KKIS-------------NL-----------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPG 280 (544)
T ss_pred cccC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCC
Confidence 9653 11 2377889999999999999999999999999999999 99998
Q ss_pred ---CChHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCC
Q 015935 314 ---VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (398)
Q Consensus 314 ---v~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~ 374 (398)
+++++|+|||++|||+++++..+++. +++++.++|+|+.|++.+ ++|++|+||+.+.
T Consensus 281 ~g~~~~~~le~ia~~tG~~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~ 340 (544)
T PRK12850 281 FGDRRKAMLEDIAVLTGGQVISEDLGIKL-ENVTLDMLGRAKRVLITK---ENTTIIDGAGDKK 340 (544)
T ss_pred cCcccHHHHHHHHHHhCCEEeccccCCCc-ccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHH
Confidence 99999999999999999994322222 335667899999999764 8999999998864
No 35
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-57 Score=468.72 Aligned_cols=314 Identities=23% Similarity=0.328 Sum_probs=278.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (398)
...+|.+++..|++++..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4577889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++ +++++ +.+.+.++|++++ +++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~-s~~~~--~~~~l~~va~~s~------~~~ 155 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKAN-ARPVT--TNAEIAQVATISA------NGD 155 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------cCh
Confidence 99999999999999999999999999999999999999999999999997 88886 5778999998875 478
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCC-------CCceecCceEEEEe
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACLD 241 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~-------~~~~~~~~kIlll~ 241 (398)
+.+++++++|+..+. .+|. +++.+.. +...++++++|++|++++.+++ |++.++||+|+++|
T Consensus 156 ~~l~~lv~~Av~~vg---~~g~-------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d 224 (541)
T PRK12851 156 AEIGRLVAEAMEKVG---NEGV-------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHE 224 (541)
T ss_pred HHHHHHHHHHHHHhc---ccCc-------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEc
Confidence 999999999999883 2332 3444444 5678899999999999999885 89999999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCC------eEEee--
Q 015935 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRR-- 313 (398)
Q Consensus 242 ~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I------~vv~~-- 313 (398)
++++ +. +.+.++++++.+.|++|||++++|++.++++|..++| ++|++
T Consensus 225 ~~i~-------------~~-----------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~ 280 (541)
T PRK12851 225 KKIS-------------NL-----------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280 (541)
T ss_pred CCcC-------------cH-----------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCc
Confidence 9853 11 2367889999999999999999999999999999997 88886
Q ss_pred ---CChHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCC
Q 015935 314 ---VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (398)
Q Consensus 314 ---v~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~ 374 (398)
+++++|+|||++|||+++++...++. +++++.++|+|+.|++++ ++|++|+||+.+.
T Consensus 281 ~~~~~~~~l~~ia~~tGa~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~ 340 (541)
T PRK12851 281 FGDRRKAMLEDIAILTGGTVISEDLGIKL-ENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKT 340 (541)
T ss_pred cccccHhHHHHHHHHhCCEEeccCCCCCc-CcCCHHHcCCccEEEEEc---ceEEEEcCCCCHH
Confidence 99999999999999999995332222 335677899999999865 8999999998763
No 36
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=8e-58 Score=469.29 Aligned_cols=308 Identities=22% Similarity=0.351 Sum_probs=274.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCc----HHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP----~a~ll~~~~~~~~~~ 88 (398)
...+|.+++..|++|+.+++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3567899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.++++.|+||..|++||+.|++.++++|+++ +.+++ +.+.+.++|+|+. +++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~-s~~~~--~~~~l~~va~ts~------~~~ 153 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKL-SKPVK--GKKEIAQVATISA------NND 153 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------cCh
Confidence 99999999999999999999999999999999999999999999999997 88886 6888999999885 358
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeeeeEEEcccccCCCC-------CceecCceEEEE
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~-~dS~li~G~vl~~~~~~~~~-------~~~~~~~kIlll 240 (398)
+.+++++++|+..+. .+|. |.+. .|+.. ++|++++|++|++++.+++| ++.++||+|+++
T Consensus 154 ~~l~~lv~~A~~~v~---~~~~-------i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~ 221 (524)
T TIGR02348 154 EEIGSLIAEAMEKVG---KDGV-------ITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILIT 221 (524)
T ss_pred HHHHHHHHHHHHHhC---cCCc-------Eeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeec
Confidence 999999999999873 3332 2232 36666 77999999999999998875 788999999999
Q ss_pred eecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHc------CCeEEeeC
Q 015935 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRV 314 (398)
Q Consensus 241 ~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~------~I~vv~~v 314 (398)
++.++ ++++ +.++++++.+.|++|||++++|++.++++|.++ +|++++++
T Consensus 222 d~~i~-------------~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~ 277 (524)
T TIGR02348 222 DKKIS-------------NIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAP 277 (524)
T ss_pred cCCcC-------------CHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECC
Confidence 99754 2322 577899999999999999999999999999997 88999887
Q ss_pred Ch-----HHHHHHHHHhCCeEcc-----ccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCC
Q 015935 315 RK-----EDMRHIAKATGATMVS-----TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (398)
Q Consensus 315 ~~-----~~L~~la~~tGa~ii~-----~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~ 374 (398)
+. ++|+|||++|||++++ ++++ +++.++|+|+.|++.+ +++++|+||+.+.
T Consensus 278 ~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~------~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~ 338 (524)
T TIGR02348 278 GFGDRRKAMLEDIAILTGGQVISEELGLKLEE------VTLDDLGKAKKVTVDK---DNTTIVEGAGDKA 338 (524)
T ss_pred CccchhhhhHHHHHHHhCCEEecccccCCcCc------CCHHHCCCceEEEEee---cEEEEEcCCCCHH
Confidence 54 8999999999999999 5544 4677899999999764 7899999988765
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-56 Score=461.31 Aligned_cols=312 Identities=21% Similarity=0.342 Sum_probs=273.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccc----cCcHHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~----~hP~a~ll~~~~~~~~~~ 88 (398)
+..+|.+++..|++++..++++++|||||+||+|||+++.|+++|||||+||+++|++ +||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4567889999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|+++ +++++ +.+.+.++++++.++ +
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--~~~~l~~va~~s~~~------~ 155 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKR-AKPVA--SSAEIAQVGTISANG------D 155 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHhhhcCC------h
Confidence 99999999999999999999999999999999999999999999999997 88886 456699999887643 7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeeeeEEEcccccCCC-------CCceecCceEEEE
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACL 240 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~-~dS~li~G~vl~~~~~~~~-------~~~~~~~~kIlll 240 (398)
+.+++++++|+..+. .+|. ++ +. .|+.. .++++++|+.|++++.+++ |+..++||+|+++
T Consensus 156 ~~l~~li~eA~~~vg---~~g~--i~-----v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 156 AAIGKMIAQAMQKVG---NEGV--IT-----VE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHHhc---cCCc--ee-----ee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 999999999999883 3342 22 21 37776 7999999999999999886 7888999999999
Q ss_pred eecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHc------CCeEEeeC
Q 015935 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRV 314 (398)
Q Consensus 241 ~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~------~I~vv~~v 314 (398)
++.++ +. +.+.++++.+.+.|++|||++++|++.++++|..| +|+++++.
T Consensus 224 d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~ 279 (545)
T PRK12852 224 EKKLS-------------GL-----------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (545)
T ss_pred cCccC-------------CH-----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecC
Confidence 88653 12 25778899999999999999999999999999987 79999975
Q ss_pred C-----hHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCC
Q 015935 315 R-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (398)
Q Consensus 315 ~-----~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~ 373 (398)
+ +++|+|||.+|||+++++...++. +++++.++|+|+.|++.+ +++++|+||..+
T Consensus 280 ~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l-~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~ 339 (545)
T PRK12852 280 GFGDRRKAMLEDIAILTGGQLISEDLGIKL-ENVTLKMLGRAKKVVIDK---ENTTIVNGAGKK 339 (545)
T ss_pred CcccchHhHHHHHHHhcCCEEEecCcCCCc-CCCCHHHCCCCcEEEEEc---cEEEEEeCCCCH
Confidence 5 999999999999999994222221 235677899999999865 789999998764
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-55 Score=452.53 Aligned_cols=323 Identities=21% Similarity=0.315 Sum_probs=282.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhcccc----CcHHHHHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVE----HPAAKVLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~----hP~a~ll~~~~~~~~~~ 88 (398)
+..+|.+++..|++|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++ ||.++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45789999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++.++++.|+||..|++||+.|.+.++++|+++ +++++ +.+.+.++|+++.++ +
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~v~--~~~~l~~va~~s~~~------d 155 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKN-SKKVT--SNDEIAQVGTISANG------D 155 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHHHHhcC------c
Confidence 99999999999999999999999999999999999999999999999997 88886 356799999987653 5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeeeeEEEcccccCCCC-------CceecCceEEEE
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~-~dS~li~G~vl~~~~~~~~~-------~~~~~~~kIlll 240 (398)
+.+++++++|+..+ +.+|. ++ +. .+++. .++++++|++|++++.+++| +.++++|+|+++
T Consensus 156 ~~i~~lv~~Av~~v---g~~g~--i~-----v~--~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 156 AEIGKFLADAMKKV---GNEGV--IT-----VE--EAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred hHHHHHHHHHHHHh---ccCCc--ee-----eE--ecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 88999999999988 33342 22 22 23455 58999999999999998866 567889999999
Q ss_pred eecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHH------cCCeEEeeC
Q 015935 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVE------AGAIAVRRV 314 (398)
Q Consensus 241 ~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~------~~I~vv~~v 314 (398)
+..++ +. +.+.++++.+.+.|++|||++++|++.++++|.. .+|+++++.
T Consensus 224 d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~ 279 (546)
T PRK14104 224 EKKLS-------------SL-----------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (546)
T ss_pred hhhhc-------------CH-----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEecc
Confidence 84432 22 2367889999999999999999999999999996 468999887
Q ss_pred C-----hHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCC----------------
Q 015935 315 R-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT---------------- 373 (398)
Q Consensus 315 ~-----~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~---------------- 373 (398)
+ +++|++||.+|||+++++...+.. +++++.++|+|+++++ +++++++|+||+.+
T Consensus 280 ~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l-~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~ 355 (546)
T PRK14104 280 GFGDRRKAMLQDIAILTGGQAISEDLGIKL-ENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEE 355 (546)
T ss_pred CCCcchHHHHHHHHHHhCCEEEecCCCCCc-CcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 6 899999999999999998433222 3356778999999994 78899999999886
Q ss_pred -------------------CeEEEEcccce
Q 015935 374 -------------------SAYIILGKVPS 384 (398)
Q Consensus 374 -------------------~~~til~~~~~ 384 (398)
+.+||+++|++
T Consensus 356 ~~~~~~~~~l~eRi~~l~~~~atI~irG~t 385 (546)
T PRK14104 356 TTSDYDREKLQERLAKLAGGVAVIRVGGAT 385 (546)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 89999999987
No 39
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3e-55 Score=450.75 Aligned_cols=310 Identities=21% Similarity=0.285 Sum_probs=267.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHH----HHHHHHHhhhcc
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAK----VLVELAELQDRE 88 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~----ll~~~~~~~~~~ 88 (398)
...+|.+++.+-+++|..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++ |+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 4567889999999999999999999999999999999999999999999999999999999995 888899999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCch
Q 015935 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (398)
Q Consensus 89 ~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (398)
+||||||+++|+++||+++..|+++|+||..|++||+.|.+.++++|+++ +.+++ +++.|.++|+++++ ++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--d~~~L~~VA~ts~~------~~ 154 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEY-ARPVE--DIQAITQVASISAG------ND 154 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHhcc------Ch
Confidence 99999999999999999999999999999999999999999999999997 88886 68889999998864 68
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCC---Cc----eecCceEEEEe
Q 015935 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PL----RVAPAKIACLD 241 (398)
Q Consensus 169 ~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~---~~----~~~~~kIlll~ 241 (398)
+.+++++++|++.+. .+|.+ ++ +..++...++++++|++|++++.+++| ++ .++||+|++++
T Consensus 155 ~~l~~lv~eAv~~vg---~~g~i--~~------~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 155 EEVGSMIADAIEKVG---REGVI--SL------EEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHHhc---cCCce--ee------cCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 999999999999883 33422 21 112334578899999999999998875 44 48999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHH--HH----cCCeEEeeC-
Q 015935 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYF--VE----AGAIAVRRV- 314 (398)
Q Consensus 242 ~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l--~~----~~I~vv~~v- 314 (398)
++|++.+ ..+.++++++.+.|+++||++++|++.++++| .+ ++|++++++
T Consensus 224 ~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 224 KKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 9998632 23778899999999999999999999777765 76 489999998
Q ss_pred ----ChHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEec
Q 015935 315 ----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKG 369 (398)
Q Consensus 315 ----~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g 369 (398)
++++|+|||.+|||+++++-..++. +++++.++|+|+.|++++ +++++|++
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~~~~ 335 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSL-ETIQLDLLGQARRIIVTK---DSTTIIAD 335 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCc-CCCCHHHCCcceEEEEec---CEEEEEec
Confidence 4588999999999999994211111 235677899999999764 78888874
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-54 Score=449.71 Aligned_cols=312 Identities=25% Similarity=0.378 Sum_probs=272.6
Q ss_pred cccccH--HHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcH----HHHHHHHHHhhh
Q 015935 13 ERQAGQ--DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQD 86 (398)
Q Consensus 13 ~~~~g~--~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~ 86 (398)
+..+|. ++|...+.++..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 446777 79999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCC
Q 015935 87 REVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGG 166 (398)
Q Consensus 87 ~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~ 166 (398)
+++||||||+++|+++||+++.+++..|+||..|++||+.|.+.++++|+++ +.+++ .+.|.++|+++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-s~~v~---d~~L~~vA~tS~~------ 207 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKM-SKEVE---DSELADVAAVSAG------ 207 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC---HHHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999997 88885 3569999999864
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeeeeEEEcccccCC-------CCCceecCceEE
Q 015935 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQ-------GMPLRVAPAKIA 238 (398)
Q Consensus 167 ~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS-~li~G~vl~~~~~~~-------~~~~~~~~~kIl 238 (398)
+++.+++|+++|+..+. .+|.+. ..+|++.+|+ ++++|++|++++.++ +|+++++||+|+
T Consensus 208 ~~~~i~~liaeAv~~Vg---~~g~i~---------v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Il 275 (600)
T PLN03167 208 NNYEVGNMIAEAMSKVG---RKGVVT---------LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLL 275 (600)
T ss_pred CcHHHHHHHHHHHHHhc---cCCcEE---------eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEE
Confidence 57899999999999883 334221 2378999887 999999999999988 688899999999
Q ss_pred EEeecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHH------HcCCeEEe
Q 015935 239 CLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFV------EAGAIAVR 312 (398)
Q Consensus 239 ll~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~------~~~I~vv~ 312 (398)
++++.+ ++.+++ .++++++.+.|+++|+++++|++.++++|. ..+|++++
T Consensus 276 l~d~~i-------------~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk 331 (600)
T PLN03167 276 LVDKKI-------------TNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALK 331 (600)
T ss_pred EEcccc-------------CCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEE
Confidence 999854 334444 344567888999999999999999999999 66799999
Q ss_pred eCC-----hHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEE-----EcC--------eeEEEEecCC
Q 015935 313 RVR-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEER-----VAD--------DDVIMIKGTK 371 (398)
Q Consensus 313 ~v~-----~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~-----ig~--------~~~~~~~g~~ 371 (398)
+.+ +++|++||.+|||+++++..+++. +++++.++|+|+.|++++ +|+ +++.+|++|.
T Consensus 332 ~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l-~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~ 407 (600)
T PLN03167 332 APGFGERKSQYLDDIAILTGGTVIREEVGLSL-DKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLI 407 (600)
T ss_pred cccCCcchHHHHHHHHHhhCCEEecccccCCc-ccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhh
Confidence 985 899999999999999994322222 335677899999999987 776 4888888875
No 41
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.1e-38 Score=300.05 Aligned_cols=207 Identities=22% Similarity=0.323 Sum_probs=188.5
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeec
Q 015935 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFN 243 (398)
Q Consensus 165 ~~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~-~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~ 243 (398)
+.|.++|++++++|+..+.+...++. .+|++ +|+|++++||++.||++++|+++++.+.++.||++++||||++++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~-~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~ 95 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGD-DMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGP 95 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCC-ccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeee
Confidence 46899999999999999854221221 46665 59999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHH
Q 015935 244 LQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (398)
Q Consensus 244 L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la 323 (398)
|++++++. ++++++++.+.|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||
T Consensus 96 Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa 168 (261)
T cd03334 96 LEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERIS 168 (261)
T ss_pred eccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHH
Confidence 99998863 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcC-----eeEEEEecCCCCCeEEEEcccce
Q 015935 324 KATGATMVSTFADMEGEETFDSSLLGSADEVVEERVAD-----DDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 324 ~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~-----~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++|||++++++.+ +++++.+|+|+.|+++++|+ ++|++|+||+.+.+|||++||++
T Consensus 169 ~~tGa~ii~~i~~-----~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t 229 (261)
T cd03334 169 RCTGADIISSMDD-----LLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGD 229 (261)
T ss_pred HHhCCEEecChhh-----hcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCC
Confidence 9999999999542 25678899999999999996 69999999999999999999997
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=293.80 Aligned_cols=227 Identities=38% Similarity=0.545 Sum_probs=215.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhcccCCC
Q 015935 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (398)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (398)
.+..|.|+.++|+.+..++|.++++|+||.|++|+++.+.|++.+|||| .|++++++...+.+|+.++|||
T Consensus 22 ~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdG 92 (400)
T KOG0357|consen 22 DRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDG 92 (400)
T ss_pred chhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccC
Confidence 5789999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCchHHHH
Q 015935 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (398)
Q Consensus 93 tts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 172 (398)
||.+++|++++++++..++.+|+||..|.+||..+.+.+++.|+++ +.+++
T Consensus 93 tTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i-~~~~e---------------------------- 143 (400)
T KOG0357|consen 93 TTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEI-SDPFE---------------------------- 143 (400)
T ss_pred CcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhh-ccccc----------------------------
Confidence 9999999999999999999999999999999999999999988876 44432
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeecccccccccc
Q 015935 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (398)
Q Consensus 173 ~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~~~k~~~~ 252 (398)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 253 ~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~ 332 (398)
+..+++++++.|+++++|||++||+|.++|.+|+..+++||...++|.||.+||+++++
T Consensus 144 ---------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVp 202 (400)
T KOG0357|consen 144 ---------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVP 202 (400)
T ss_pred ---------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeec
Confidence 35678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcceeeeEEEEEEc--CeeEEEEecCCCCCeEEEEcccce
Q 015935 333 TFADMEGEETFDSSLLGSADEVVEERVA--DDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 333 ~~~~l~~~~~~~~~~lG~~~~v~~~~ig--~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
++++| +++.+|+|+.|++..|| .+++++++.|++++++||+.||.+
T Consensus 203 rF~eL------~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~N 250 (400)
T KOG0357|consen 203 RFSEL------TAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGN 250 (400)
T ss_pred cHhhh------CHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCc
Confidence 99875 67899999999999998 679999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=8.8e-34 Score=259.41 Aligned_cols=185 Identities=39% Similarity=0.529 Sum_probs=172.8
Q ss_pred HHHHHHHHhhcccCccCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCC
Q 015935 149 DSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM 228 (398)
Q Consensus 149 ~~l~~ia~t~l~sK~~~~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~ 228 (398)
+.|.++|+|+++||+ +.|.+.+++++++|++.+.+. ++ .++.++|++++++||++.||++++|++|++++.+++|
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~--~~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPD--NR--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhcc--CC--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 468999999999999 999999999999999998542 12 5677899999999999999999999999999999999
Q ss_pred CceecCceEEEEeecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCC
Q 015935 229 PLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA 308 (398)
Q Consensus 229 ~~~~~~~kIlll~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I 308 (398)
|++++||||++++++|++ ||+++++|++.+++||.++||
T Consensus 77 ~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I 115 (209)
T cd03333 77 PKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGI 115 (209)
T ss_pred CeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCC
Confidence 999999999999999986 999999999999999999999
Q ss_pred eEEeeCChHHHHHHHHHhCCeEccccccccCCcCCCCCCcceeeeEEEEEEcCeeEEEEecCCCCCeEEEEcccceE
Q 015935 309 IAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAYIILGKVPSI 385 (398)
Q Consensus 309 ~vv~~v~~~~L~~la~~tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~til~~~~~~ 385 (398)
++++++++++|+|||++|||+++++++++ ++..+|+|++|+++++|+++|++|+||+.+.+|||++||++-
T Consensus 116 ~~v~~~~~~~l~~ia~~tga~ii~~~~~~------~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~ 186 (209)
T cd03333 116 MAVRRVKKEDLERIARATGATIVSSLEDL------TPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATE 186 (209)
T ss_pred EEEEeCCHHHHHHHHHHHCCEEecccccC------ChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCH
Confidence 99999999999999999999999997654 667899999999999999999999999999999999999983
No 44
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=241.22 Aligned_cols=309 Identities=24% Similarity=0.345 Sum_probs=259.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCcceeecCCCCeEEeccHHHHHhhccccCcH----HHHHHHHHHhhhc
Q 015935 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (398)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~la~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~----a~ll~~~~~~~~~ 87 (398)
++..||.+++..-++++..||+++..|+||+|++++|-...|.+.||+||.|+.+++.+.++. ++++++.+.+..+
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 467899999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhcccCCccCHHHHHHHHHhhcccCccCCc
Q 015935 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (398)
Q Consensus 88 ~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~l~~~~s~~~~~~~~~~l~~ia~t~l~sK~~~~~ 167 (398)
..|||||++.+|+.++..++..-+.+|.+|..+.+|...+.+...+.|.++ ++++. ..+.+.++|..+. +.
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~-sk~Vt--t~eeIaqVAtiSA------ng 167 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKM-SKPVT--TPEEIAQVATISA------NG 167 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHhhhc------CC
Confidence 999999999999999999999999999999999999999999999999998 99997 5889999998664 46
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeeeeEEEcccccCCCCCce-------ecCceEEE
Q 015935 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGMPLR-------VAPAKIAC 239 (398)
Q Consensus 168 ~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~-~dS~li~G~vl~~~~~~~~~~~~-------~~~~kIll 239 (398)
+....+++.+|+.++ +.+|.+++ ..|... ++-++++|+-|++++.+|++.+. +++|++++
T Consensus 168 D~~ig~li~~a~~kv---G~~GVItv---------~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll 235 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKV---GRKGVITV---------KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLL 235 (550)
T ss_pred cHHHHHHHHHHHHHh---CcCCeEEe---------ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhh
Confidence 888999999999998 45553332 356665 67889999999999999887543 45666665
Q ss_pred EeecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcC------CeEEee
Q 015935 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVRR 313 (398)
Q Consensus 240 l~~~L~~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~------I~vv~~ 313 (398)
.+-.+ +.+ +.+.+.++.-.+...++++.+.+++.++|..|.-|+ +.+++.
T Consensus 236 ~~kki-------------------~~v-----~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKa 291 (550)
T KOG0356|consen 236 SEKKI-------------------SSV-----QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKA 291 (550)
T ss_pred hhhhh-------------------hHH-----HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEec
Confidence 55332 122 235566777777788999999999999999999984 455554
Q ss_pred -----CChHHHHHHHHHhCCeEcccccc-ccCCcCCCCCCcceeeeEEEEEEcCeeEEEEec
Q 015935 314 -----VRKEDMRHIAKATGATMVSTFAD-MEGEETFDSSLLGSADEVVEERVADDDVIMIKG 369 (398)
Q Consensus 314 -----v~~~~L~~la~~tGa~ii~~~~~-l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~g 369 (398)
-++..+.+++.+|||..+.+-.. ++. +.....++|+|.++.+ ..++.+.+.|
T Consensus 292 pgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~l-e~~~~~dLG~~~evvv---tkd~t~ll~g 349 (550)
T KOG0356|consen 292 PGFGDNRKNLLKDIAILTGATVFGEELSTLNL-EDAKLEDLGEVGEVVV---TKDDTMLLKG 349 (550)
T ss_pred CCCcchHHHhhhHHHHHhhhhhhccchhhccc-ccCchhhcCcceeEEE---ecCcceeeCC
Confidence 46777999999999999987654 444 4567789999999885 3455555554
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.91 E-value=2e-24 Score=230.78 Aligned_cols=206 Identities=20% Similarity=0.261 Sum_probs=186.3
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeeeeEEEcccccCCCCCceecCceEEEEeeccc
Q 015935 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245 (398)
Q Consensus 166 ~~~~~ls~l~~~av~~v~~~~~~g~~~~~~~~I~i~~~~G~~~~dS~li~G~vl~~~~~~~~~~~~~~~~kIlll~~~L~ 245 (398)
.|.+.+..++++|...+++.-..|..+...++|++++++||+..||+++.|+++.+..+|..|.+++++|||+++.++|+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 68899999999999999876554555666789999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHH
Q 015935 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (398)
Q Consensus 246 ~~k~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~ 325 (398)
|++-..+ ...++.+.++|.++++..+.+|...++|++++.++|+..|+++|...+|.++-++++..|+||+++
T Consensus 412 yqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 412 YQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRC 484 (1598)
T ss_pred hhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHH
Confidence 9875432 234566667799999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcceeeeEEEEEEc-----CeeEEEEecCCCCCeEEEEcccce
Q 015935 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVA-----DDDVIMIKGTKTTSAYIILGKVPS 384 (398)
Q Consensus 326 tGa~ii~~~~~l~~~~~~~~~~lG~~~~v~~~~ig-----~~~~~~~~g~~~~~~~til~~~~~ 384 (398)
|||.|+++++.+ ....+|+|+.|+++++- .+.++||+||+++.+||||+||..
T Consensus 485 tga~I~~siDsl------t~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~ 542 (1598)
T KOG0230|consen 485 TGADIVPSVDSL------TSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDS 542 (1598)
T ss_pred hcCceecchhhh------hccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCC
Confidence 999999999764 66889999999998776 568999999999999999999986
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=81.38 E-value=7 Score=32.35 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
...+.|++.|+++|++. .+.+.+.++|..+||-+..-.+.+.=+.|-....+.
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 35788999999999998 789999999999999999988865555565555554
No 47
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=75.34 E-value=12 Score=28.68 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCCh
Q 015935 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (398)
Q Consensus 277 ~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (398)
..+.|...++++|+|. ++.+.+...|.++||-++.....
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~~ 83 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAGG 83 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTSS
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCCC
Confidence 3555667899999998 68999999999999999998443
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=74.63 E-value=7.9 Score=30.34 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~ 315 (398)
...+.|...++++|++. ++.+.+.+.|.++||.++...+
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 34566677899999996 6999999999999999998776
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=70.52 E-value=15 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=33.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC
Q 015935 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (398)
Q Consensus 277 ~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~ 315 (398)
..+.+...++++|++. ++.+.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3556677899999998 5999999999999999998776
No 50
>PRK07283 hypothetical protein; Provisional
Probab=54.85 E-value=60 Score=25.60 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHH----HHHHHcCCeEEeeCChHHHHHHHHHhCC
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~L~~la~~tGa 328 (398)
...+.|.+-.+.+||.+.+.++... +.+..++|.++...+++ .|..++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 3456677778999999999998888 66667799998877664 56677774
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=52.03 E-value=81 Score=24.27 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCHHHHH----HHHHcCCeEEeeCChHHHHHHHH
Q 015935 274 TKERIEKLLKAGANVILTTKGIDDMALK----YFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 274 l~~~v~~i~~~gv~lVl~~~~I~~~al~----~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
+++.++.|.+-.+.+|+..+++++.... .|.+++|.++---++.+|-+.|-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 4667788888889999999999987654 56778999888878777665553
No 52
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=52.02 E-value=53 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC
Q 015935 274 TKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (398)
Q Consensus 274 l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~ 315 (398)
+...++.+ .++++|++. ++.+.+...|.++||.+++.-.
T Consensus 56 ~~~~l~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 56 LDAIIKLL--SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHHHH--cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 33444444 599999987 7899999999999999996654
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=51.10 E-value=53 Score=28.62 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=38.0
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEee--CC-----hHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR--VR-----KEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~--v~-----~~~L~~la~~tGa~ 329 (398)
++.|.+.++||||......+...+.|.+.||.++-- -. .+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 577888999999987666666778899999854422 21 24577888888863
No 54
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=47.97 E-value=54 Score=32.37 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=40.5
Q ss_pred HHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeC---C----hHHHHHHHHHhCCe
Q 015935 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV---R----KEDMRHIAKATGAT 329 (398)
Q Consensus 277 ~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v---~----~~~L~~la~~tGa~ 329 (398)
-+|+|...++||||....-.+...+.|.+.||.++..- + .+.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 37889999999999976656667888999999886542 1 24567888888874
No 55
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.97 E-value=66 Score=29.31 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHCCCeEEEeCCCCCHH-HHHHHHHcCCeEEeeC--C----hHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDM-ALKYFVEAGAIAVRRV--R----KEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~-al~~l~~~~I~vv~~v--~----~~~L~~la~~tGa~ 329 (398)
+|+|.+.+++|||....-++. ..+.|.+.+|.++-.- . .+.++.+++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 688899999999997655454 4888999998765431 2 44588899999986
No 56
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=43.14 E-value=1.1e+02 Score=29.47 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~ 332 (398)
.+.++.+.+.++++|.+..+.++...+.+.++|+.++-.+..-+.-+-+.-.|+..+.
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 3456778889999999988888888999999999988777665555666667887763
No 57
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=42.95 E-value=94 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC----hHHHHHHHHHhCCe
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGAT 329 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~----~~~L~~la~~tGa~ 329 (398)
...++.+ .++++|||. +|.+.+...|.+.||.+++.-. .+.|+.+.+..-..
T Consensus 55 ~~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~ 110 (119)
T TIGR02663 55 APKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGN 110 (119)
T ss_pred HHHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCC
Confidence 3445555 599999987 8899999999999999997432 56677777766444
No 58
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.99 E-value=1.1e+02 Score=29.94 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEcc
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii~ 332 (398)
.++++.+.+.+|.+|++..+.+.. .+.|.++||.++-.+..-..-+-+.-.|+..+-
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 356788888999999999887766 588999999999887666556667778887763
No 59
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=41.61 E-value=93 Score=24.38 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~ 315 (398)
...++.+ .++++|||. +|.+.+...|.++||.++....
T Consensus 53 ~~~~~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 53 AARLEAL--EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred HHHHHHH--CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 3334444 489998887 8899999999999999997665
No 60
>PRK07714 hypothetical protein; Provisional
Probab=41.58 E-value=1.3e+02 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHH----HHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKY----FVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~----l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
...+.+.+-.+.+||.+.+.++....- +..++|.++...++ +.|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 445667777899999999998866554 46678999887666 4566677754
No 61
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=41.49 E-value=1.2e+02 Score=25.10 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHH-----HHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
+.++.|.+-.+.+||.+.++++. ..+++.+++|.++..-+++ .|..++|-.
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~---eLG~a~Gk~ 92 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKK---DLGKAAGLE 92 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCCC
Confidence 44566777778999999999773 2345678899987776665 456666654
No 62
>PRK06683 hypothetical protein; Provisional
Probab=40.82 E-value=1.4e+02 Score=22.79 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHH----HHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKY----FVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~----l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
..++.|.+-.+.+|+.+.+.++...+- +..++|.++..-++ +.|..++|-.+
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 445777778899999999999876554 57779998776654 55677777654
No 63
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=40.63 E-value=75 Score=30.03 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEee-C-----ChHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR-V-----RKEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~-v-----~~~~L~~la~~tGa~ 329 (398)
++.|...++||||.....++...+.|.+.||.++-- . -.+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 678899999999998888888888999999876532 1 234588888888854
No 64
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=40.22 E-value=1.5e+02 Score=22.52 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHH----HHHHHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
++..+.|.+-.+.+|+.+.+.++... +++.+++|.++.--++ +.|..++|-.+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~~ 73 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIEV 73 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCCc
Confidence 34567778888999999999998764 4567789998777655 45666667543
No 65
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=39.47 E-value=51 Score=30.60 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHH
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKED 318 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~ 318 (398)
.+++.|....|+++|++...-...+.++..+.||+.+..++...
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 35678888889999999988899999999999999888776543
No 66
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=39.05 E-value=1.3e+02 Score=24.64 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHH-----HHHHHHHcCCeEEeeCChHHHHHHHHHhCC
Q 015935 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~L~~la~~tGa 328 (398)
...+.|.+-.+.+|+.+.++++. ..+++.+++|..+..-++++ |.+++|-
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e---LG~a~Gk 87 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED---LGAAAGL 87 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 44566666778999999999764 34457888999877776655 4555554
No 67
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=38.94 E-value=1.3e+02 Score=24.30 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHH----HHHHHHcCCeEEee-CChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMA----LKYFVEAGAIAVRR-VRKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~a----l~~l~~~~I~vv~~-v~~~~L~~la~~tGa~ 329 (398)
..++.|.+-.+.+||.+.+.++.. .+++..++|.++.. -+. +.|.+++|-.
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 456777778899999999998874 55677789998875 454 4567777744
No 68
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=36.21 E-value=1.8e+02 Score=22.19 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHH----HHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALK----YFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~----~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
..++.|.+-.+.+||.+.+.++.... ++..++|.+...-++ +.|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 44677778899999999999977655 456679999655555 5566677664
No 69
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=34.96 E-value=65 Score=30.42 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChH
Q 015935 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKE 317 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~ 317 (398)
.+++.|....|+++|++...-...+.+...+.||..+..++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 3567888888999999998889999999999999888877654
No 70
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.25 E-value=1.1e+02 Score=26.66 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHCCCeEEEeCCCCCHH-HHHHHHHcCCeEEee-C------ChHHHHHHHHHhC
Q 015935 278 IEKLLKAGANVILTTKGIDDM-ALKYFVEAGAIAVRR-V------RKEDMRHIAKATG 327 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~-al~~l~~~~I~vv~~-v------~~~~L~~la~~tG 327 (398)
+++|...++||||......+. ....|.+.||-++-- . ..+.++.+.+++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 688999999999987665554 888899999854332 1 1244777888888
No 71
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=33.42 E-value=96 Score=23.85 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCHH-----HHHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 275 KERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 275 ~~~v~~i~~~gv~lVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
.+..+.+.+-.+.+|+.+.++++. ...++.+++|.++..-++ +.|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~---~eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSK---EELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHH---HHHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCH---HHHHHHHCCC
Confidence 455677777788999999999763 335778889999887755 5556666655
No 72
>PF12846 AAA_10: AAA-like domain
Probab=33.25 E-value=1.1e+02 Score=28.41 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCHHH-----HHHHHHcCCeEEeeCChHHHHHHHHHhCCe
Q 015935 272 DMTKERIEKLLKAGANVILTTKGIDDMA-----LKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (398)
Q Consensus 272 ~~l~~~v~~i~~~gv~lVl~~~~I~~~a-----l~~l~~~~I~vv~~v~~~~L~~la~~tGa~ 329 (398)
+.+.++++...+.|+.+++....+++.. -..+..-+..++-+....+.+.+++..|.+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3577888999999999999999998888 788888899999999888888899988864
No 73
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=32.77 E-value=69 Score=30.34 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHH
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDM 319 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L 319 (398)
++++|....|++++++--.....+.+...+.||+.+..++...+
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~f 255 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGRF 255 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCcc
Confidence 56888899999999999999999999999999999988765443
No 74
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.26 E-value=3.3e+02 Score=24.73 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEE-eeCChHHHHHHHHHhCCeEcc
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV-RRVRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv-~~v~~~~L~~la~~tGa~ii~ 332 (398)
+.++...+.|++.+++ .+.++.+.+++.++||.++ .....+|+.+- .--|+.++.
T Consensus 79 ~~~~~a~~aGA~Fivs-P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-~~~Gad~vk 134 (213)
T PRK06552 79 VTARLAILAGAQFIVS-PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-LEAGSEIVK 134 (213)
T ss_pred HHHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-HHcCCCEEE
Confidence 4567788999998885 5889999999999999988 45677777655 568998886
No 75
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.69 E-value=1.2e+02 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEee----CChHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR----VRKEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~----v~~~~L~~la~~tGa~ 329 (398)
+|+|...++||||+.....+ ..+.|.+.+..++-. --.+.++.+++++|-.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 57788889999998876655 667777776444322 1346778888888864
No 76
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=30.64 E-value=2.9e+02 Score=26.88 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChH-HHHHHHHHhCCe
Q 015935 259 DPRELEKIRQREADMTKERIEKLLKA-GANVILTTKGIDDMALKYFVEAGAIAVRRVRKE-DMRHIAKATGAT 329 (398)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~-gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~-~L~~la~~tGa~ 329 (398)
++++++++. ..+++++++.+++. +..+++...+-....+..+.+.|+-++.--... +++.+.+..|.+
T Consensus 188 Spe~f~efv---~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k 257 (321)
T cd03309 188 SPATFREFI---LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDK 257 (321)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCC
Confidence 356666554 46778888888887 544555444444456777888887777654444 888899999964
No 77
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=30.62 E-value=1.8e+02 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVR 312 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~ 312 (398)
.+.|...++++||..+...+...+.+.+.+|.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 46677779999999887766677778888755543
No 78
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.39 E-value=2.6e+02 Score=22.00 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHH----HHHHHcCCeEEeeC-ChHHHHHHHHHhCCe
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRV-RKEDMRHIAKATGAT 329 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al----~~l~~~~I~vv~~v-~~~~L~~la~~tGa~ 329 (398)
...+.+.+..+.+||.+.+.++... +++.+++|.++... +++ .|.+++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~---eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSV---ELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHH---HHHHHhCCC
Confidence 4467777788999999999986554 45677899988874 664 456677743
No 79
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=30.10 E-value=1.1e+02 Score=27.58 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC----hHHHHHHHHHhCCeEccccc
Q 015935 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGATMVSTFA 335 (398)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~----~~~L~~la~~tGa~ii~~~~ 335 (398)
++|++++.+.++.+.+...++.++=...++.+.....++|+-.+-++. .+.+-.++.-.|+.++--..
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~ 124 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHS 124 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEec
Confidence 467789999999999766677788778888888888888988888753 44677777778988875443
No 80
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=29.57 E-value=75 Score=29.40 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCCh
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (398)
+++.|....|+++|++...-...+.++..+.||+.+..++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 45666667777777777777777777777777776665543
No 81
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.55 E-value=1.9e+02 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEE-eeCChHHHHHHHHHhCCeEccc
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV-RRVRKEDMRHIAKATGATMVST 333 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv-~~v~~~~L~~la~~tGa~ii~~ 333 (398)
+.++...+.|++.+++- +.++...+++.+++|..+ .....+|+.. +.-.|+.++-=
T Consensus 78 ~~a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKl 134 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEE
Confidence 34677889999998887 688999999999999999 8888888666 78899988753
No 82
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=29.45 E-value=3.2e+02 Score=27.10 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCe-EEeeCChHHHHHHHHHhCC--eEccccc
Q 015935 259 DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI-AVRRVRKEDMRHIAKATGA--TMVSTFA 335 (398)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~-vv~~v~~~~L~~la~~tGa--~ii~~~~ 335 (398)
+++++++|. +.+++++++.+++.|..+++...+-....+..+.+-+.- ++-.....++....+..|. .++..++
T Consensus 245 sp~~f~ef~---~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g~~~~i~GNl~ 321 (378)
T cd03308 245 RPKQFEKFY---WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLGDKKCIAGGFP 321 (378)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhCCCEEEEcCCC
Confidence 456666554 578899999998888777777666666678888887654 4444444788888899995 5555553
No 83
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=28.70 E-value=1.7e+02 Score=26.78 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.2
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC--hH----HHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR--KE----DMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~--~~----~L~~la~~tGa~ 329 (398)
+++|...+++|||......+.....|.+.+..++-..+ .+ .++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 57788999999999887776566667665544433332 23 478888888865
No 84
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=27.77 E-value=2.9e+02 Score=21.97 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCeEEEeCCCCCHHHHHHH----HHcCCeEEeeCChHHHHHHHHHhCCeE
Q 015935 276 ERIEKLLKAGANVILTTKGIDDMALKYF----VEAGAIAVRRVRKEDMRHIAKATGATM 330 (398)
Q Consensus 276 ~~v~~i~~~gv~lVl~~~~I~~~al~~l----~~~~I~vv~~v~~~~L~~la~~tGa~i 330 (398)
...+.|.+-.+.+||.+.+.++....-+ ...+|.++...++++ |..++|=..
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~~ 79 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRDE 79 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCCC
Confidence 3456677778999999999987665544 556899988877655 667777543
No 85
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=27.74 E-value=2.2e+02 Score=27.73 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCC-HHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEc
Q 015935 274 TKERIEKLLKAGANVILTTKGID-DMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (398)
Q Consensus 274 l~~~v~~i~~~gv~lVl~~~~I~-~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii 331 (398)
+...++.+.+.++++|.+.-+.. +...+.+.++||.++-.+..-.--+.+.-.|+..+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 56778888888999999988887 88999999999999988755555556666787665
No 86
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=27.71 E-value=67 Score=26.61 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCC--CHHHHHHHHHcCCeEEee
Q 015935 271 ADMTKERIEKLLKAGANVILTTKGI--DDMALKYFVEAGAIAVRR 313 (398)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVl~~~~I--~~~al~~l~~~~I~vv~~ 313 (398)
.+.-++.++++.+.++.+||.+.+. ++..++.+.++++.+++-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 3445677899999999988887776 688889999999998874
No 87
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=27.43 E-value=1.9e+02 Score=21.79 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCCCcceeecCCCCeEEeccHHHHHhhccccCcHHHHHHHHHHhhhc
Q 015935 40 GPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDR 87 (398)
Q Consensus 40 GP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~ 87 (398)
=+-+...+++++.|-+.+..-|+.|.+.++=.+-+..+...++...+.
T Consensus 12 ~~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 12 ERAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPA 59 (81)
T ss_pred ccccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcCC
Confidence 345567778888777888999999999999999888888777765553
No 88
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=26.79 E-value=3e+02 Score=26.59 Aligned_cols=72 Identities=26% Similarity=0.334 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCC--eEcccc
Q 015935 259 DPRELEKIRQREADMTKERIEKLLKA--GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (398)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~--gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa--~ii~~~ 334 (398)
++++++++. +.+++++++.+++. +++++...++-. ..+.++.+.++-++..-...++....+.+|. .+...+
T Consensus 205 sp~~f~ef~---~P~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni 280 (335)
T cd00717 205 SPEDFEEFV---LPYLKRIIEEVKKRLPGVPVILFAKGAG-GLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNL 280 (335)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEcCCCH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCC
Confidence 355666554 47788889999887 566765555544 6788888888777655455688888888884 445443
No 89
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.66 E-value=2.1e+02 Score=23.27 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCeEEEeCCC-----CCHHHHHHHHHcCCeEEeeC
Q 015935 273 MTKERIEKLLKAGANVILTTKG-----IDDMALKYFVEAGAIAVRRV 314 (398)
Q Consensus 273 ~l~~~v~~i~~~gv~lVl~~~~-----I~~~al~~l~~~~I~vv~~v 314 (398)
.+.++++.+.+.|+--+....+ +++.+.+++.++++.++.--
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeC
Confidence 4678899999999976666555 89999999999999888753
No 90
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=26.39 E-value=1.9e+02 Score=26.83 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=35.9
Q ss_pred HHHHHHCCCeEEEeCCC-CCHHHHHHHHHcCCeEEeeC--Ch----HHHHHHHHHhCC
Q 015935 278 IEKLLKAGANVILTTKG-IDDMALKYFVEAGAIAVRRV--RK----EDMRHIAKATGA 328 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~-I~~~al~~l~~~~I~vv~~v--~~----~~L~~la~~tGa 328 (398)
+|+|...++|||+...+ -.+...+.|.+.||.++.-- +. +.++.+++++|-
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 57788899999998643 34567788889988776541 22 346677777775
No 91
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.36 E-value=1.8e+02 Score=28.13 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=36.3
Q ss_pred HHHHHHCCCeEEEeCCCC-----CHHHHHHHHHcCCeEEeeC--------ChHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRV--------RKEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I-----~~~al~~l~~~~I~vv~~v--------~~~~L~~la~~tGa~ 329 (398)
+++|...+++|||..... +....+.|.+.||.++..- -.+.++.+++++|-.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 577888899999886543 3457778888887765421 144578888888863
No 92
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.93 E-value=2e+02 Score=23.29 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=25.3
Q ss_pred HHHHHHHHHHCCCe-EEEeCCCCCHHHHHHHHHcCCeEEee
Q 015935 274 TKERIEKLLKAGAN-VILTTKGIDDMALKYFVEAGAIAVRR 313 (398)
Q Consensus 274 l~~~v~~i~~~gv~-lVl~~~~I~~~al~~l~~~~I~vv~~ 313 (398)
..+.++.+.+.|+. +++..+..++.+.+++.++|+-++..
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 45667777777886 45556666788888888888887753
No 93
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.74 E-value=1.9e+02 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCC-------hHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR-------KEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~-------~~~L~~la~~tGa~ 329 (398)
+|+|...++|||+....-.+...+.....++.++..-. .+.++.++.++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 57788899999998765555555555566766664211 23588888888853
No 94
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=24.64 E-value=3.8e+02 Score=25.63 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCC--eEcccc
Q 015935 260 PRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (398)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa--~ii~~~ 334 (398)
+++++++. ..+++++++.+.+.|..+++..-+-....+.++.+.++-++..-...++..+.+..|. .+...+
T Consensus 199 p~~f~e~~---~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~i 272 (330)
T cd03465 199 PEDFKEFS---LPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNL 272 (330)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCc
Confidence 44444443 4678888888888777666533343446788888888887776555588888888884 445444
No 95
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=24.32 E-value=3.9e+02 Score=21.75 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=44.6
Q ss_pred HHHHHCCCeEEEeCCCC------CHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCCeEc
Q 015935 279 EKLLKAGANVILTTKGI------DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (398)
Q Consensus 279 ~~i~~~gv~lVl~~~~I------~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa~ii 331 (398)
+.+...++.+|++.-++ ++.+..+|.+.++-++..-.++.++|.-..-|++-+
T Consensus 55 e~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~krV 113 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKKRV 113 (121)
T ss_pred HHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccceE
Confidence 34455789999997766 799999999999999999999999999998887543
No 96
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.15 E-value=2.1e+02 Score=25.77 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHCCCeEEEeCCC-CCHHHHHHHHHcCCeEEee--C-----ChHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKG-IDDMALKYFVEAGAIAVRR--V-----RKEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~-I~~~al~~l~~~~I~vv~~--v-----~~~~L~~la~~tGa~ 329 (398)
+++|.+.+++||+.... .++...+.|.+.||.++-. . -.+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 47888999999999764 3556778899999876542 1 234466777777764
No 97
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=1.7e+02 Score=26.26 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcC----CeEEeeCCh
Q 015935 272 DMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG----AIAVRRVRK 316 (398)
Q Consensus 272 ~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~----I~vv~~v~~ 316 (398)
..+++.++.+++.++++++++.+.++..-..|.+-. |.++..++.
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn 124 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSN 124 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeec
Confidence 458899999999999999999999988877777654 777776654
No 98
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=23.96 E-value=3.5e+02 Score=22.11 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCH-H----HHHHHHHcCCeEEeeCChHHHHHHHH
Q 015935 274 TKERIEKLLKAGANVILTTKGIDD-M----ALKYFVEAGAIAVRRVRKEDMRHIAK 324 (398)
Q Consensus 274 l~~~v~~i~~~gv~lVl~~~~I~~-~----al~~l~~~~I~vv~~v~~~~L~~la~ 324 (398)
++..++.|.+-.+.+|+.+.+++| . ...+|.+++|.++---++.+|=+.+-
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 345566777778899999999993 2 33456778999998888877655543
No 99
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.57 E-value=2.8e+02 Score=24.67 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=39.8
Q ss_pred HHHHHHCCCeEEEeCCCC-CHHHHHHHHHcCCeEEeeCC-------hHHHHHHHHHhCCe
Q 015935 278 IEKLLKAGANVILTTKGI-DDMALKYFVEAGAIAVRRVR-------KEDMRHIAKATGAT 329 (398)
Q Consensus 278 v~~i~~~gv~lVl~~~~I-~~~al~~l~~~~I~vv~~v~-------~~~L~~la~~tGa~ 329 (398)
+++|...+++|||..... .......+.+.+|-++---. .+.++.++.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 377889999999998888 77778888888988776432 35788899999976
No 100
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.34 E-value=3e+02 Score=25.78 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChH---HHHHHHHHhCCeEcc
Q 015935 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKE---DMRHIAKATGATMVS 332 (398)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~---~L~~la~~tGa~ii~ 332 (398)
+.|++++...++.+.+. .++.++--..++.++....+.|.-.+..++.. ++-.++.-.|+.++-
T Consensus 57 ~~E~~rl~~~v~~~~~~-~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 57 EEELNRVVPVIKALRDQ-PDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 35677889999988754 24556777888999998888898888876654 377777778888765
No 101
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.00 E-value=4.9e+02 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=22.0
Q ss_pred CHHHHHHHHHcCCeEE---eeCChHHHHHHHHHh
Q 015935 296 DDMALKYFVEAGAIAV---RRVRKEDMRHIAKAT 326 (398)
Q Consensus 296 ~~~al~~l~~~~I~vv---~~v~~~~L~~la~~t 326 (398)
+..+++++.+.|+.-+ .-++.++++.++..+
T Consensus 49 N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~ 82 (233)
T PF01136_consen 49 NSESARFLKELGASRITLSPELSLEEIKEIAENS 82 (233)
T ss_pred CHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhC
Confidence 5667777777764433 347888888888888
No 102
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.67 E-value=4e+02 Score=20.90 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=26.1
Q ss_pred CHHHHHHHHHcCCeEEeeCC--------hHHHHHHHHHhCCeEcccc
Q 015935 296 DDMALKYFVEAGAIAVRRVR--------KEDMRHIAKATGATMVSTF 334 (398)
Q Consensus 296 ~~~al~~l~~~~I~vv~~v~--------~~~L~~la~~tGa~ii~~~ 334 (398)
++.+.+++.+.++..+-+.. ...++|.|.-.|.++++++
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~~ 102 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTTL 102 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEecH
Confidence 36667777766666664432 3568888888888887655
No 103
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=21.55 E-value=1.3e+02 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHC--CCeEEEeCCCCCHHHHHHHHH-cCCeEE
Q 015935 275 KERIEKLLKA--GANVILTTKGIDDMALKYFVE-AGAIAV 311 (398)
Q Consensus 275 ~~~v~~i~~~--gv~lVl~~~~I~~~al~~l~~-~~I~vv 311 (398)
.+++....+. ..-++++..++++.+.++..+ ++|.++
T Consensus 67 ~~~~~~~~~~~~~~~iivt~~~~t~~a~~~~~~~~~I~l~ 106 (115)
T PF04471_consen 67 RQLIGKAKKYGADKGIIVTSSGFTPEAKEFAEKFKNIELI 106 (115)
T ss_dssp HHHHHHHGGGT-SEEEEE-SSEE-HHHHHHHH--------
T ss_pred HHHhhhhhccCCCEEEEEECCcCCHHHHHHHHhhcccccc
Confidence 3334444444 345888899999999999988 764443
No 104
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=21.49 E-value=3.9e+02 Score=25.02 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHcCCeEEeeCCh----HHHHHHHHHhCCeEcc
Q 015935 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK----EDMRHIAKATGATMVS 332 (398)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~----~~L~~la~~tGa~ii~ 332 (398)
++|++++.+.++.|.+. .++.++=...++.+.....++|.-.+..++. +.+-.++.-.|+.++-
T Consensus 58 ~~E~~rl~~~v~~i~~~-~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 58 EEELERVIPVLEALRGE-LDVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVL 125 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence 45777888899988754 3666788888899999888889887776543 4566667777888765
No 105
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=21.35 E-value=2.1e+02 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCeEEEe-CCCCCHHHHHHHHHcCCeEEee
Q 015935 274 TKERIEKLLKAGANVILT-TKGIDDMALKYFVEAGAIAVRR 313 (398)
Q Consensus 274 l~~~v~~i~~~gv~lVl~-~~~I~~~al~~l~~~~I~vv~~ 313 (398)
+..-++.+++.|+|.|=+ ...-++..+++|.+.||+|..-
T Consensus 38 ~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e 78 (298)
T PF02836_consen 38 MERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQE 78 (298)
T ss_dssp HHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEe
Confidence 445568899999998865 5666899999999999999864
No 106
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=21.04 E-value=2e+02 Score=22.77 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHH----cC---CeEEee---CChHHHHHHHHHhCCeEcc
Q 015935 271 ADMTKERIEKLLKAGANVILTTKGIDDMALKYFVE----AG---AIAVRR---VRKEDMRHIAKATGATMVS 332 (398)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVl~~~~I~~~al~~l~~----~~---I~vv~~---v~~~~L~~la~~tGa~ii~ 332 (398)
+.+|+.... ..++-+-+=.++++|.++.-+.+ +. |-+.+. -.++..+.||..|||.++.
T Consensus 8 r~~LR~~ah---~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 8 KQHLKGLAH---PLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred HHHHHHhcC---CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEe
Confidence 444444433 23666667789999888776554 43 333322 2355568899999999884
No 107
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.85 E-value=4.7e+02 Score=25.30 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC--CCeEEEeCCCCCHHHHHHHHHcCCeEEeeCChHHHHHHHHHhCC--eEcccc
Q 015935 260 PRELEKIRQREADMTKERIEKLLKA--GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (398)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~--gv~lVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L~~la~~tGa--~ii~~~ 334 (398)
++++++|. ..+++++++.+++. +++++...++.. ..+.++.+.++-++..-...++....+..|. .++..+
T Consensus 209 p~~f~ef~---~p~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni 283 (338)
T TIGR01464 209 PEDFEEFV---LPYLKKIIEEVKARLPNVPVILFAKGAG-HLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNL 283 (338)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEeCCcH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCC
Confidence 55666554 46788888888886 566776565654 4677788888888766556788888888886 455554
Done!