BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015936
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 191 IDEFSGKNELSSEFQQNVDDLNED-----IGVEGLGEMTPEVQQYILNLQSRLSS--IKK 243
I+E E+ E ++ +D E+ IGV LGE+TP+ + YIL+ RLSS +
Sbjct: 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSG 139
Query: 244 ELCEVKRKSSALQMQQFVGEEKNDLLDYLRSLQPEKVVELSEPTCPELKETIHSVVHGLL 303
+ ++ KS AL+ G E + D K +E+ E P LKE I VV G +
Sbjct: 140 AIRDLGEKSIALE-----GGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFI 194
Query: 304 AT 305
T
Sbjct: 195 GT 196
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 191 IDEFSGKNELSSEFQQNVDDLNED-----IGVEGLGEMTPEVQQYILNLQSRLSS--IKK 243
I+E E+ E ++ +D E+ IGV LGE+TP+ + YIL+ RLSS +
Sbjct: 79 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSG 138
Query: 244 ELCEVKRKSSALQMQQFVGEEKNDLLDYLRSLQPEKVVELSEPTCPELKETIHSVVHGLL 303
+ ++ KS AL+ G E + D K +E+ E P LKE I VV G +
Sbjct: 139 AIRDLGEKSIALE-----GGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFI 193
Query: 304 AT 305
T
Sbjct: 194 GT 195
>pdb|1T3W|A Chain A, Crystal Structure Of The E.coli Dnag C-terminal Domain
(residues 434 To 581)
pdb|1T3W|B Chain B, Crystal Structure Of The E.coli Dnag C-terminal Domain
(residues 434 To 581)
Length = 148
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 288 CPELKETIHSVVHGLLATLSPKMHSKVPPLEN 319
P+LK T ++ GLL +P++ + VPPLEN
Sbjct: 10 VPQLKRTTXRILIGLLVQ-NPELATLVPPLEN 40
>pdb|2HAJ|A Chain A, Solution Structure Of The Helicase-Binding Domain Of
Escherichia Coli Primase
Length = 148
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 288 CPELKETIHSVVHGLLATLSPKMHSKVPPLEN 319
P+LK T ++ GLL +P++ + VPPLEN
Sbjct: 10 VPQLKRTTMRILIGLLVQ-NPELATLVPPLEN 40
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 287 TCPELKETIHSVV---HGLLATLSPKMHSKVPPLENTATGMVNIWSKDCAELVENTSLHF 343
T PE KET + ++ + K +S+V P+ G+ + + + LH
Sbjct: 179 TFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPGNGVSETLMGELGNIAKTRDLHI 238
Query: 344 QPQISLTRD 352
Q IS RD
Sbjct: 239 QSHISENRD 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,693,441
Number of Sequences: 62578
Number of extensions: 372624
Number of successful extensions: 909
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 12
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)