BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015936
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0571 PE=1 SV=1
Length = 473
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 191 IDEFSGKNELSSEFQQNVDDLNED-----IGVEGLGEMTPEVQQYILNLQSRLSS--IKK 243
I+E E+ E ++ +D E+ IGV LGE+TP+ + YIL+ RLSS +
Sbjct: 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSG 139
Query: 244 ELCEVKRKSSALQMQQFVGEEKNDLLDYLRSLQPEKVVELSEPTCPELKETIHSVVHGLL 303
+ ++ KS AL+ G E + D K +E+ E P LKE I VV G +
Sbjct: 140 AIRDLGEKSIALE-----GGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFI 194
Query: 304 AT 305
T
Sbjct: 195 GT 196
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 25 PPSPSNFSPLRFTAQEP----RKSRSLAVSSSSSSSSSPFDDFCSKLNSPLPDSSTKKSV 80
P P +P RF + P R+ RS +VS+S SP +D + SP P K+
Sbjct: 111 PEGPEPLAP-RFPGRPPPSAARQKRSESVSTSDED--SPSEDRSDRKASPAPSKRKKRRH 167
Query: 81 LASMI-QEVEPLDVTLIQKDVPPTTLDAMKRTISSMLGLLPSDRFHVFIE---ALWEPLS 136
++E L+ + P D R + +M LP DR V+ + A W
Sbjct: 168 RTVFTAHQLEELEKAFSEAHYP----DVYAREMLAMKTELPEDRIQVWFQNRRAKWRKRE 223
Query: 137 KLL-VSSMMTGYTLRNAEYRLCL 158
K SS+M Y L A R C+
Sbjct: 224 KRWGGSSVMAEYGLYGAMVRHCI 246
>sp|Q9LH73|GDL52_ARATH GDSL esterase/lipase At3g14820 OS=Arabidopsis thaliana GN=At3g14820
PE=3 SV=2
Length = 351
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 234 LQSRLSSIKKELCEVKRKSSALQMQQFVGEEKNDL--------LDYLRSLQPEKVVELSE 285
Q L+ IK+ E K K + V NDL ++Y R+ E +VEL+
Sbjct: 139 FQEYLAKIKQHFGEEKVKFILEKSVFLVVSSSNDLAETYWVRSVEYDRNSYAEYLVELAS 198
Query: 286 PTCPELKETIHSVVHGLLATLSPKMHSKVP----PLENTATGMVNIWSKDCAELVENTSL 341
EL E L + + S VP P + T G + + C E + N +L
Sbjct: 199 EFIKELSE---------LGAKNIGLFSGVPVGCLPAQRTLFGG---FERKCYEKLNNMAL 246
Query: 342 HFQPQISLTRDYL-----ARLLF 359
HF ++S + D L +RL+F
Sbjct: 247 HFNSKLSSSLDTLKKELPSRLIF 269
>sp|Q9RN02|Y6528_BACAN Uncharacterized protein pXO2-29/pXO2-30/BXB0028/GBAA_pXO2_0028
OS=Bacillus anthracis GN=pXO2-29/pXO2-30 PE=4 SV=2
Length = 922
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 262 GEEKNDLLDYLRSLQPEKVVELSEP----------TCPE--LKETIHSVVHGLLATLSPK 309
G++ +DLLD+ ++P +V+ +EP + P + T +V + L T++PK
Sbjct: 68 GKKGSDLLDFEAFIKPSDIVDGTEPFDKSNEAGNDSSPNNGIVRTFDTVTYPLKVTINPK 127
Query: 310 MHSKVPPLENTATG 323
H K+ ++ TG
Sbjct: 128 KHDKLKDIKLKITG 141
>sp|Q9HCK0|ZBT26_HUMAN Zinc finger and BTB domain-containing protein 26 OS=Homo sapiens
GN=ZBTB26 PE=2 SV=2
Length = 441
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 158 LERNLDVHEGDGENQTSECSQTDLHGMLLNRENIDEFSGKNELSSEFQQNVDDLNEDI 215
L+ +L++H GD ++ + C H +L R+++ + GKN + ++NV DL D
Sbjct: 341 LQDHLNLHSGDKPHKCNYCDMVFAHKPVL-RKHLKQLHGKNSFDNANERNVQDLTVDF 397
>sp|P18392|RSTB_ECOLI Sensor protein RstB OS=Escherichia coli (strain K12) GN=rstB PE=1
SV=2
Length = 433
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 183 GMLLNRENIDEFSGKNELSSEFQQNVDDLNEDIG-----VEGLGE--MTPEVQ-QYILNL 234
G L R + DE S L F Q D++N I ++G+ TP V+ +Y L +
Sbjct: 177 GHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEM 236
Query: 235 QSRLSSIKKELCEVKRKSSALQMQQFVGEEKNDLLDYLRSLQPEKVVELSEPTCP 289
LS+ + + + R S Q++ + E LL Y R +P+ + LSEP P
Sbjct: 237 SDNLSAAESQ--ALNRDIS--QLEALIEE----LLTYARLDRPQNELHLSEPDLP 283
>sp|B4U238|UXUA_STREM Mannonate dehydratase OS=Streptococcus equi subsp. zooepidemicus
(strain MGCS10565) GN=uxuA PE=3 SV=1
Length = 364
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 60 FDDFCSKLNSPLPDSSTKKSVLASMIQEVEPL--DVTLIQKDVPPTTLDAMKRTISSMLG 117
FD S LN PLPD ST + L + + +V+P+ D+ L D + M
Sbjct: 109 FDWTRSDLNYPLPDGSTSLAFLKADLADVDPVADDLNLPGWD--------SSYSKEEMKA 160
Query: 118 LLPSDRFHVFIEALWEPLSKLLVSSMMT 145
++ R H+ E LW L + + M T
Sbjct: 161 IIEHYRHHISEEDLWANLDYFIKAIMPT 188
>sp|P19401|M12_STRPY M protein, serotype 12 (Fragment) OS=Streptococcus pyogenes
GN=emm12 PE=1 SV=1
Length = 564
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 341 LHFQPQISLTRDYLARLLFWCMLLGHYLRGLEYRMELMELLSLTSDAEND 390
L + Q+++T++ A+ F LGH L EY ++ EL S +DA+ D
Sbjct: 210 LSLEQQLAVTKEN-AKKDFELAALGHQLADKEYNAKIAELESKLADAKKD 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,720,264
Number of Sequences: 539616
Number of extensions: 5741767
Number of successful extensions: 27330
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 26970
Number of HSP's gapped (non-prelim): 485
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)