Query 015936
Match_columns 398
No_of_seqs 171 out of 219
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 05:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015936.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015936hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 78.8 1.3 9.2E-05 31.5 4.6 27 224-250 28-54 (61)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 75.1 1.9 0.00014 32.2 5.0 31 225-255 48-78 (88)
3 d1nkpb_ a.38.1.1 (B:) Max prot 74.7 2.3 0.00016 31.5 5.2 32 225-256 43-74 (83)
4 d1nlwa_ a.38.1.1 (A:) Mad prot 72.9 2.5 0.00018 31.0 5.0 31 225-255 43-73 (79)
5 d1am9a_ a.38.1.1 (A:) SREBP-1a 60.1 6.2 0.00046 28.9 5.0 26 225-250 46-71 (80)
6 d1wmub_ a.1.1.2 (B:) Hemoglobi 50.2 3 0.00022 33.4 1.7 64 80-148 83-146 (146)
7 d2dn3b1 a.1.1.2 (B:2-146) Hemo 26.2 8.6 0.00062 30.5 0.7 65 79-148 81-145 (145)
8 d1outb_ a.1.1.2 (B:) Hemoglobi 24.2 4.8 0.00035 32.1 -1.2 50 99-148 97-146 (146)
9 d1spga_ a.1.1.2 (A:) Hemoglobi 19.3 13 0.00093 29.0 0.4 49 99-147 94-142 (143)
10 d1qc7a_ a.118.14.1 (A:) FliG { 17.7 26 0.0019 26.6 1.9 31 77-107 11-41 (101)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.75 E-value=1.3 Score=31.48 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.2
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015936 224 TPEVQQYILNLQSRLSSIKKELCEVKR 250 (398)
Q Consensus 224 ~~eA~~YI~~Lqsel~sl~keL~~~k~ 250 (398)
=.+|-+||..||.++..|+.|...++.
T Consensus 28 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 28 LRKAIDYIKYLQQVNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999998877654
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.10 E-value=1.9 Score=32.20 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 015936 225 PEVQQYILNLQSRLSSIKKELCEVKRKSSAL 255 (398)
Q Consensus 225 ~eA~~YI~~Lqsel~sl~keL~~~k~k~~~l 255 (398)
-.|.+||..|+.++..+..+.+.+++++..+
T Consensus 48 ~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L 78 (88)
T d1nkpa_ 48 KKATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999888877765544
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.74 E-value=2.3 Score=31.47 Aligned_cols=32 Identities=16% Similarity=0.415 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 015936 225 PEVQQYILNLQSRLSSIKKELCEVKRKSSALQ 256 (398)
Q Consensus 225 ~eA~~YI~~Lqsel~sl~keL~~~k~k~~~l~ 256 (398)
-.|.+||..|+.+...+..++..+++.+.+++
T Consensus 43 ~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~ 74 (83)
T d1nkpb_ 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999988877666553
No 4
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.93 E-value=2.5 Score=30.98 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 015936 225 PEVQQYILNLQSRLSSIKKELCEVKRKSSAL 255 (398)
Q Consensus 225 ~eA~~YI~~Lqsel~sl~keL~~~k~k~~~l 255 (398)
-.|.+||..|+.++..+..+.+.++++...|
T Consensus 43 ~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L 73 (79)
T d1nlwa_ 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888877655544
No 5
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.08 E-value=6.2 Score=28.87 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015936 225 PEVQQYILNLQSRLSSIKKELCEVKR 250 (398)
Q Consensus 225 ~eA~~YI~~Lqsel~sl~keL~~~k~ 250 (398)
..|.+||..|+.+...|+.|...++.
T Consensus 46 ~~a~~yI~~L~~~~~~L~~e~~~lk~ 71 (80)
T d1am9a_ 46 RKAIDYIRFLQHSNQKLKQENLSLRT 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998877765
No 6
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=50.19 E-value=3 Score=33.40 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=52.1
Q ss_pred HHHHHhhhcCchhhhhhcccCChHHHHHHHHHHHHhhcCCCCCCeeeEEEecchhHHHHHHHHHhhhHh
Q 015936 80 VLASMIQEVEPLDVTLIQKDVPPTTLDAMKRTISSMLGLLPSDRFHVFIEALWEPLSKLLVSSMMTGYT 148 (398)
Q Consensus 80 ~L~~yvqs~~Pe~v~~~sk~~speV~e~i~~~v~~lLG~Lp~~~f~v~i~tsre~La~Llas~mMtGYf 148 (398)
.+..+|+.+ ...-....|+-++.|.+.+-..|...-++.|.-.+...|+++-..++.+|..||.
T Consensus 83 ~~~~~L~~l-----~h~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T d1wmub_ 83 KTFAQLSEL-----HCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH 146 (146)
T ss_dssp HHTHHHHHH-----HHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHh-----CCccCCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 444555443 4555778999999999988888887777888888889999999999999999994
No 7
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.25 E-value=8.6 Score=30.53 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=51.5
Q ss_pred hHHHHHhhhcCchhhhhhcccCChHHHHHHHHHHHHhhcCCCCCCeeeEEEecchhHHHHHHHHHhhhHh
Q 015936 79 SVLASMIQEVEPLDVTLIQKDVPPTTLDAMKRTISSMLGLLPSDRFHVFIEALWEPLSKLLVSSMMTGYT 148 (398)
Q Consensus 79 n~L~~yvqs~~Pe~v~~~sk~~speV~e~i~~~v~~lLG~Lp~~~f~v~i~tsre~La~Llas~mMtGYf 148 (398)
..|..+|..+ ...-....|+-++.|.+.+...|...-++.|+..+...|+++-.+++.+|-.||.
T Consensus 81 ~~l~~~L~~l-----~~~h~gv~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 145 (145)
T d2dn3b1 81 KGTFATLSEL-----HCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 145 (145)
T ss_dssp HHHHHHHHHH-----HHTTTCCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHh-----cccccCCChhHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4556666554 2233468899999999888888887777788888889999999999999999994
No 8
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=24.23 E-value=4.8 Score=32.14 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=42.8
Q ss_pred cCChHHHHHHHHHHHHhhcCCCCCCeeeEEEecchhHHHHHHHHHhhhHh
Q 015936 99 DVPPTTLDAMKRTISSMLGLLPSDRFHVFIEALWEPLSKLLVSSMMTGYT 148 (398)
Q Consensus 99 ~~speV~e~i~~~v~~lLG~Lp~~~f~v~i~tsre~La~Llas~mMtGYf 148 (398)
.+.|+-++.|...+-..|...-++.|...+...|+++-.+++.+|-.+||
T Consensus 97 ~v~~~~f~~~~~~ll~~l~~~lg~~fT~e~~~AW~k~~~~v~~~l~~~Y~ 146 (146)
T d1outb_ 97 FVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146 (146)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888888888777777777666788888889999999999999999997
No 9
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus xanthurus) [TaxId: 59837]}
Probab=19.34 E-value=13 Score=29.03 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=44.8
Q ss_pred cCChHHHHHHHHHHHHhhcCCCCCCeeeEEEecchhHHHHHHHHHhhhH
Q 015936 99 DVPPTTLDAMKRTISSMLGLLPSDRFHVFIEALWEPLSKLLVSSMMTGY 147 (398)
Q Consensus 99 ~~speV~e~i~~~v~~lLG~Lp~~~f~v~i~tsre~La~Llas~mMtGY 147 (398)
.+.|+-++.|.+.+-..|...-++.|...+...|+++-..++.+|-.||
T Consensus 94 ~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~i~~~l~~~y 142 (143)
T d1spga_ 94 RVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKY 142 (143)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCchhHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999998888889998889999999999999999888
No 10
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=17.73 E-value=26 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=22.9
Q ss_pred cchHHHHHhhhcCchhhhhhcccCChHHHHH
Q 015936 77 KKSVLASMIQEVEPLDVTLIQKDVPPTTLDA 107 (398)
Q Consensus 77 ~~n~L~~yvqs~~Pe~v~~~sk~~speV~e~ 107 (398)
....+-..++.++++++..--|.+++++++.
T Consensus 11 ~~~~l~~llr~i~~~~l~~ALkga~~~~~~~ 41 (101)
T d1qc7a_ 11 DDRSIQLVLREVDTRDLALALKGASDELKEK 41 (101)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHcCCCHHHHHH
Confidence 3567778888888888877777777776544
Done!