BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015937
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/394 (61%), Positives = 297/394 (75%), Gaps = 29/394 (7%)
Query: 27 TKPKF-LSFQFSSL----STLSSFSSKPYKIFTTLSPSSQVSTEATDPPERELETNSQEE 81
TKP+F SF SL ++L + S + + PSS +T PPE E +
Sbjct: 18 TKPRFRCSFSNPSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSD 77
Query: 82 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG 141
KFDW++ WYP+MP+CDLDK+VPH KKV+G+D+VVWWDRNE +W+V D CPHRLAPLS+G
Sbjct: 78 KFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDG 137
Query: 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201
RIDQWGRLQCVYHGWCF+GSGDCK IPQAPPDGPPVHTF++AC AVYPSTVQH+I+WFWP
Sbjct: 138 RIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPSTVQHEIIWFWP 197
Query: 202 NIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLM 261
N P+YK+II+T KPP+IPEL+DPSFTKL GNRDIPYGY+VL+ENLMDPAHVPYAHYGLM
Sbjct: 198 NSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPAHVPYAHYGLM 257
Query: 262 RTRKPK-----------------------VKLDREGGRPVEMSVNKIDINGFIGKQEWGS 298
R KPK K+DREGG+P+E++V K+D GF KQEWG
Sbjct: 258 RFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGFFSKQEWGY 317
Query: 299 SKFLAPCIFFAYTDLMKDQENGSASSAGAEK-KLEQQRAALIFICVPVSPGHSRLIWAFP 357
S F+APC++ + TD + +QE+ + A ++K L ++R +LIFIC+PVSPG SRLIW FP
Sbjct: 318 SNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPVSPGRSRLIWTFP 377
Query: 358 RNFQTWIDKVVPRWIFHIGQNLILDSDLYLLHVE 391
RNF +IDK+VPRW+FHIGQN ILDSDL+LLHVE
Sbjct: 378 RNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVE 411
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 205 bits (522), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 178/337 (52%), Gaps = 41/337 (12%)
Query: 71 ERELETNSQEE--KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFA 128
E E + +EE +F W WYP+ V DLD VP ++LG D+V+W+DRN+ +W F
Sbjct: 68 EEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFD 127
Query: 129 DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE--KACAA 186
D CPHRLAPLSEGR+D+ G LQC YHGW F G G C IPQA GP + +ACA
Sbjct: 128 DLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAI 187
Query: 187 VYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP-ELDDPSFTKLFGNRDIPYGYEVLLE 245
+P+ V +++ WP+ D + +PP +P + D P F+ + RD+ YGY+ L+E
Sbjct: 188 KFPTMVSQGLLFVWPD--ENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLME 245
Query: 246 NLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWG---SSKFL 302
N+ DP+H+ +AH+ KV R+ +P+ V GF G + ++KF+
Sbjct: 246 NVSDPSHIDFAHH--------KVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRITAKFV 297
Query: 303 APCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFIC---VPVSPGHSRLIWAFPRN 359
APC +L A+ + + +I+IC +P++PG +R I RN
Sbjct: 298 APCYSMNKIEL------------DAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARN 345
Query: 360 F-------QTWIDKVVPRWIFHIGQNLILDSDLYLLH 389
F W +VVPRW H NL+ D D+ +L
Sbjct: 346 FFQFSVPGPAWW-QVVPRWYEHWTSNLVYDGDMIVLQ 381
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 154/331 (46%), Gaps = 47/331 (14%)
Query: 71 ERELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADA 130
E+E + + +DW +WYPL ++ P KV ++V++ D N+ +++ + D
Sbjct: 85 EQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGND-QFQCYEDR 143
Query: 131 CPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPS 190
CPHRLA LSEG++ GRL+C+YHGW F G G C IPQ P D + AC Y
Sbjct: 144 CPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTYEV 199
Query: 191 TVQHDIVWFWPNIAPRYKDIIKTKKPPHIPEL------DDPSFTKLFGNRDIPYGYEVLL 244
++W W + K PP++ ++ P F + ++PY + +LL
Sbjct: 200 RDSQGVLWVW----------MSRKTPPNVSKIPWFENFARPGFQDISTTHELPYDHSILL 249
Query: 245 ENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFI---GKQEWGSS-- 299
ENLMDPAHVP +H + RE + + V + GF G+++ GS
Sbjct: 250 ENLMDPAHVPISH------DRTDWSAKREDAQALGFEVTERTDRGFAGWWGREKDGSKPN 303
Query: 300 --KFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFP 357
+F APC+ +++ +K E + +F+C P G S LI F
Sbjct: 304 FLRFEAPCVLQNNREIV-------------DKNGEINHFSGLFLCRPTGQGKSMLIVRFG 350
Query: 358 RNFQTWIDKVVPRWIFHIGQNLILDSDLYLL 388
++ + K+ P W FH + + + D+ L
Sbjct: 351 ATKRSPLIKLFPEWYFHQNASKVFEQDMGFL 381
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 157/362 (43%), Gaps = 70/362 (19%)
Query: 56 LSPSSQVSTEATDPPER--ELETNSQEEK------FDWFSQWYPLMPVCDLDKRVPHAKK 107
L S+ T +D E ++ N +EEK +DW +WYPL ++ + P
Sbjct: 47 LRRSAVAGTAVSDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLT 106
Query: 108 VLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFI 167
V +V++ D E R + D CPHRLA LSEG++ GRL+C+YHGW F G G C I
Sbjct: 107 VYDRQIVLYKD-GEGTLRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKI 164
Query: 168 PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPEL----- 222
PQ P + AC Y +VW W + TK PP+ +L
Sbjct: 165 PQLPASA---KIPKAACVKTYEVKDSQGVVWVW----------MSTKTPPNPEKLPWFEN 211
Query: 223 -DDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMS 281
P F + ++PY + +LLENLMDPAHVP +H T K RE +P+
Sbjct: 212 FARPGFFDISTTHELPYDHSILLENLMDPAHVPISHDRTDFTAK------REDAQPLVFE 265
Query: 282 VNKIDINGFIGKQEWGSSK----------FLAPCIF-----FAYTDLMKDQENGSASSAG 326
V + GF G WG K F APC+ F D +K+ +G
Sbjct: 266 VTERSNRGFAGT--WGREKEGGKGSNLLRFDAPCVLQNNREFEGKDGVKNYFSG------ 317
Query: 327 AEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLILDSDLY 386
+F+C P G S LI F ++ + V+P+W +H + + D+
Sbjct: 318 ------------LFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQWFWHQNACKVFEQDMG 365
Query: 387 LL 388
L
Sbjct: 366 FL 367
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 129 DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVY 188
D C HR PLS G++ + G++ C YHGW F+G G C +P P A
Sbjct: 344 DECAHRGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMPSTP-------FCRNVGVAAL 395
Query: 189 PSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLM 248
P + +W WP + + +PP + D+P + +L+ENL+
Sbjct: 396 PCAEKDGFIWVWPGDGLPAETLPDFAQPPEGFLIHAEIMV------DVPVEHGLLIENLL 449
Query: 249 DPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWG----SSKFLAP 304
D AH P+ H P V+ NK ++GF W F P
Sbjct: 450 DLAHAPFTHTSTFARGWPVPDF-------VKFHANKA-LSGF-----WDPYPIDMAFQPP 496
Query: 305 CIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWI 364
C+ + L + + +A K Q + +C+P GH+RL++ +F W+
Sbjct: 497 CMTLSTIGLAQPGKIMRGVTASQCKNHLHQ----LHVCMPSKKGHTRLLYRMSLDFLPWM 552
Query: 365 DKV 367
V
Sbjct: 553 RHV 555
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 103/268 (38%), Gaps = 42/268 (15%)
Query: 129 DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVY 188
D+C HR PLS G++ G +QC YHGW F GSG C +P A
Sbjct: 173 DSCAHRACPLSLGKVIN-GHVQCPYHGWEFDGSGACTKMPS-------TRMCHGVGVAAL 224
Query: 189 PSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLM 248
P + VW WP P PP ++ D+P + +L+ENL+
Sbjct: 225 PCVEKDGFVWVWPGDGPPPDLPPDFTAPPAGYDVHAEIMV------DVPVEHGLLMENLL 278
Query: 249 DPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWG----SSKFLAP 304
D AH P+ H G P+ +V G +W S F P
Sbjct: 279 DLAHAPFTHTTTFAR-----------GWPIPEAVRFHATKMLAG--DWDPYPISMSFNPP 325
Query: 305 CIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWI 364
CI + L + + A K+ Q + +C+P GH+RL++ +F W
Sbjct: 326 CIALSTIGLSQPGKIMRGYKAEECKRHLHQ----LHVCMPSKEGHTRLLYRMSLDFWGWA 381
Query: 365 DKVVP----RWIFHIGQNLILDSDLYLL 388
K VP W GQ +L DL L+
Sbjct: 382 -KHVPFVDVLWKKIAGQ--VLGEDLVLV 406
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 154/399 (38%), Gaps = 78/399 (19%)
Query: 21 YNKTHFTKPKFLSF--QFSSLSTL-------SSFSSKPYKIFTTLSPSSQVSTEATD--P 69
+N+ H ++ + S + + + TL SS T+L+PS+ ++ + P
Sbjct: 139 HNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVNKKP 198
Query: 70 PERELETNSQEEKFD--WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVF 127
P R L + + ++ + WYP+ DL D +V D E +W +F
Sbjct: 199 PRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKD-----------DTMVPIDCFEEQWVIF 247
Query: 128 ----------ADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPV 177
+ C HR PL G +++ GR+QC YHGW +S G C+ +P +
Sbjct: 248 RGKDGRPGCVMNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRI 306
Query: 178 HTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGN--RD 235
+ P Q +VW WP P IP L PS + +
Sbjct: 307 RSL--------PCFEQEGMVWIWPGNDPPKST---------IPSLLPPSGFTIHAEIVME 349
Query: 236 IPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQE 295
+P + +LL+NL+D AH P+ H L V+ + G+
Sbjct: 350 LPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL-------VKFLTPSSGLQGY----- 397
Query: 296 WG----SSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSR 351
W +F PC+ + + K + S+ L Q + IC+P S +R
Sbjct: 398 WDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQ-----LHICLPSSRNKTR 452
Query: 352 LIWAFPRNFQTWIDKVVPRWIF--HIGQNLILDSDLYLL 388
L++ +F WI V I H + +L+ DL L+
Sbjct: 453 LLYRMSLDFAPWIKHVPFMHILWSHFAEK-VLNEDLRLV 490
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 126 VFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACA 185
D CPHR APLS G I Q G+L C YHG G +P P C
Sbjct: 19 ALEDFCPHRGAPLSLGSI-QDGKLVCGYHGLVMDCDGRTASMPAQRVQAFP-------CI 70
Query: 186 AVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLE 245
+P+ +H +W WP A + PH+ ++P++ G I Y ++++
Sbjct: 71 RAFPAQERHGFIWVWPGDAA----LADPALIPHLEWAENPAWAYGGGLYHIACDYRLMID 126
Query: 246 NLMDPAHVPYAH 257
NLMD H Y H
Sbjct: 127 NLMDLTHETYVH 138
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW 146
+ WY D ++ P A+ L VV++ ++ D C HRLAPLS G ++
Sbjct: 5 NTWYVAGMATDCSRK-PLARTFLNEKVVLF-RTHDGHAVALEDRCCHRLAPLSLGDVEDA 62
Query: 147 GRLQCVYHGWCFSGSGDCKFIP---QAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203
G ++C YHG F+ SG C IP Q PP C +P +H ++W W
Sbjct: 63 G-IRCRYHGMVFNASGACVEIPGQEQIPP---------GMCVRRFPLVERHGLLWIWMGD 112
Query: 204 APRYK-DIIKTKKPPHIPE-LDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLM 261
R D I + PE D + N Y+++++NL+D H+ + H +
Sbjct: 113 PARANPDDIVDELWNGAPEWRTDSGYIHYQAN------YQLIVDNLLDFTHLAWVHPTTL 166
Query: 262 RTR-----KPKVKLDREGGRPVEMSVNKIDINGFIGKQEWGSSKF 301
T KP ++ D G ++++ + +N + G +KF
Sbjct: 167 GTDSAASLKPVIERDTTG--TGKLTITRWYLNDDMSNLHKGVAKF 209
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 142/370 (38%), Gaps = 79/370 (21%)
Query: 49 PYKIFTTLSPSSQVSTEATDPPERELETNSQEEKFDWFSQ-----------WYPLMPVCD 97
P ++ T L S +T + +RE +TN+ + + WYP+ D
Sbjct: 171 PGRVVTELDKPSSSTTASAVELDRE-KTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTAD 229
Query: 98 LDKRVPHAKKVLGLDVVVWWDRNENEWRVFA----------DACPHRLAPLSEGRIDQWG 147
L D +V + E W +F + C HR PL G +++ G
Sbjct: 230 LKH-----------DTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNE-G 277
Query: 148 RLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY 207
R+QC YHGW +S G+CK +P K P Q ++W WP P
Sbjct: 278 RIQCPYHGWEYSTDGECKKMPST--------KLLKVKIKSLPCLEQEGMIWIWPGDEP-- 327
Query: 208 KDIIKTKKPPHIPELDDPSFTKLFGN--RDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK 265
P +P L PS + D+P + +LL+NL+D AH P+ H
Sbjct: 328 -------PAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGW 380
Query: 266 PKVKLDREGGRPVEMSVNKIDINGFIGKQEWG----SSKFLAPCIFFAYTDLMKDQENGS 321
L V+ + G+ W +F PCI + + K +
Sbjct: 381 SVPSL-------VKFLTPTSGLQGY-----WDPYPIDMEFKPPCIVLSTIGISKPGKLEG 428
Query: 322 ASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNL-- 379
S+ L Q + +C+P S +RL++ +F I K +P ++ H+ ++
Sbjct: 429 KSTQQCATHLHQ-----LHVCLPSSKNKTRLLYRMSLDFAP-ILKNLP-FMEHLWRHFAE 481
Query: 380 -ILDSDLYLL 388
+L+ DL L+
Sbjct: 482 QVLNEDLRLV 491
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 105 AKKVLGLDV----VVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160
A K LG + +V++ E D CPHR APLS G + G+L C YHG
Sbjct: 17 ADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRD-GKLICGYHGLEMGC 75
Query: 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP 220
G +P G P C Y ++ +W WP +++ H+
Sbjct: 76 EGKTLAMPGQRVQGFP-------CIKSYAVEERYGFIWVWPGD----RELADPALIHHLE 124
Query: 221 ELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAH 257
D+P + G I Y ++++NLMD H Y H
Sbjct: 125 WADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVH 161
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 14/201 (6%)
Query: 62 VSTEATDPPERELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNE 121
+ST+ + RE++ + ++ W+ L D + PH + G +VV+ D +
Sbjct: 1 MSTDTSGVGVREIDAGALPTRY--ARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SH 57
Query: 122 NEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE 181
+ +V C H LSEG + + + C +H W + G G CK +P A T
Sbjct: 58 GDLKVLDGYCRHMGGDLSEGTV-KGDEVACPFHDWRWGGDGRCKLVPYAR------RTPR 110
Query: 182 KACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYE 241
A + + V+ +++ W + D + P IPE +T NR + G
Sbjct: 111 MARTRSWTTDVRSGLLFVWHDHEGNPPD--PAVRIPEIPEAASDEWTDWRWNRILIEGSN 168
Query: 242 V--LLENLMDPAHVPYAHYGL 260
+++N+ D AH Y H+GL
Sbjct: 169 CRDIIDNVTDMAHFFYIHFGL 189
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 148
W P+ D+ R P ++LG D+V++ D+ ++ C HR L G +++ G
Sbjct: 45 WQPVALSADVTDR-PQMVRILGEDLVLFRDKAGRPGLLYP-RCMHRGTSLYYGHVEEAG- 101
Query: 149 LQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN------ 202
++C YHGW F+ G C P P G E A YP ++ +V+ +
Sbjct: 102 IRCCYHGWLFAVDGTCLNQPCEPEGGL---RREAARQPWYPVEERYGLVFAYMGPPEKKP 158
Query: 203 IAPRYKDIIKTKKPPHIPELDDPSFTKL---FGNRDIPYGYEVLLENLMDPAHVPYAH 257
+ PRY DI++ + E+ F + ++PY + EN+MDP HV H
Sbjct: 159 VLPRY-DILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNWENIMDPYHVYILH 215
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 72 RELETNSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADAC 131
RE++T + +++ W+ L PV + PH+ + G +VV+ D ++ E V C
Sbjct: 9 REIDTGALPDRY--ARGWHCLGPVKNFSDGKPHSVNIFGTKLVVFAD-SKGELNVLDAYC 65
Query: 132 PHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPST 191
H LS+G + + + C +H W + G G CK +P A T A + +
Sbjct: 66 RHMGGDLSKGTV-KGDEVACPFHDWRWGGDGKCKLVPYAK------RTPRLARTRSWHTD 118
Query: 192 VQHDIVWFWPNIA--PRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEV--LLENL 247
V+ +++ W + P ++ + P IPE +T N + G +++N+
Sbjct: 119 VRGGLLFVWHDHEGNPPQPEV----RIPEIPEWHSGEWTDWKWNSMLIEGSNCREIIDNV 174
Query: 248 MDPAHVPYAHYGL 260
D AH Y H+GL
Sbjct: 175 TDMAHFFYIHFGL 187
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 121 ENEWRVFA--DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP---QAPPDGP 175
+ + RV A + C HR APL GR + ++C+YHG F+ SG C IP Q PP
Sbjct: 36 DTQGRVVALENRCCHRSAPLHIGR-QEGDCVRCLYHGLKFNPSGACVEIPGQEQIPP--- 91
Query: 176 PVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPEL---DDPSFTKLFG 232
K C YP ++ +VW W R P I + D P + G
Sbjct: 92 ------KTCIKSYPVVERNRLVWIWMGDPAR-------ANPDDIVDYFWHDSPEWRMKPG 138
Query: 233 NRDIPYGYEVLLENLMDPAHVPYAHYGLMRTR-----KPKVKLDREGGRPVEMSVNKIDI 287
Y+++++NL+D H+ + H + T KP ++ D G ++++ + +
Sbjct: 139 YIHYQANYKLIVDNLLDFTHLAWVHPTTLGTDSAASLKPVIERDTTGTG--KLTITRWYL 196
Query: 288 NGFIGKQEWGSSKF 301
N + G +KF
Sbjct: 197 NDDMSNLHKGVAKF 210
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 148
W P + +L+ + +L + +V + V CPHR L GR+++ G
Sbjct: 27 WIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRGVSLFMGRVEE-GG 85
Query: 149 LQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKAC-AAVYPSTVQHDIVWFW 200
L+CVYHGW FS G C +P P+ F+ + A YP +VW +
Sbjct: 86 LRCVYHGWKFSAEGKCVDMPSVRPE----DEFKNSVRVARYPVKEMAGVVWVY 134
>sp|Q10499|AIF1_SCHPO Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aif1 PE=3 SV=3
Length = 611
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 107 KVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCF-SGSGDCK 165
KV+G + V R N + A C H APL++G + G + C +HG CF + +GD +
Sbjct: 73 KVVGTEFGVLLVRARNTYFATAGKCSHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDVE 132
Query: 166 FIP 168
P
Sbjct: 133 DTP 135
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGVDEVIVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 57 MGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVP 116
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
Query: 106 KKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCK 165
++++G +V+ R++ R F + CPHR L G + C YH W F G+
Sbjct: 65 REIIGESIVLVRGRDK-VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLA 123
Query: 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDI------IKTKKPPHI 219
V F+ A + P ++ + + N+ P + + K
Sbjct: 124 HARNC----ENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEAC 179
Query: 220 PELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDR 272
PE+ D F R P ++ +++N ++ H AH G V++DR
Sbjct: 180 PEVHDLKLAARFTTR-TPANWKNIVDNYLECYHCGPAHPGF----SDSVQVDR 227
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
Query: 106 KKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCK 165
++++G +V+ R++ R F + CPHR L G + C YH W F G+
Sbjct: 65 REIIGESIVLVRGRDK-VLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLA 123
Query: 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDI------IKTKKPPHI 219
V F+ A + P ++ + + N+ P + + K
Sbjct: 124 HARNC----ENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEAC 179
Query: 220 PELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDR 272
PE+ D F R P ++ +++N ++ H AH G V++DR
Sbjct: 180 PEVHDLKLAARFTTR-TPANWKNIVDNYLECYHCGPAHPGF----SDSVQVDR 227
>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas sp.
(strain C18) GN=doxB PE=1 SV=1
Length = 449
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=ndoB PE=1 SV=1
Length = 449
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G+D V+ +N+ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 94 PVCDLDK-----RVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGR 148
PVC L++ P ++ G D+VV+ D + V + CPHR L GR + G
Sbjct: 29 PVCLLEEVSEPDGTPVRARLFGEDLVVFRD-TDGRVGVMDEYCPHRRVSLIYGRNENSG- 86
Query: 149 LQCVYHGWCFSGSGD 163
L+C+YHGW G+
Sbjct: 87 LRCLYHGWKMDVDGN 101
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 20/161 (12%)
Query: 121 ENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPP---- 176
+ E F +AC HR A L R C +HGW FS SG + G P
Sbjct: 82 DGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKVKDPKGAGYPDSFD 141
Query: 177 ---VHTFEK-ACAAVYP----STVQHDIVWFWPNIAPRYK--DIIKTKKPPHIPELDDPS 226
H +K A A Y +++ D+ + K D++ + P + L S
Sbjct: 142 CDGSHDLKKVARFASYRGFLFGSLREDVAPLEEFLGESRKVIDMVVDQSPEGLEVLRGSS 201
Query: 227 FTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPK 267
GN ++V +EN D HV H+ T++ +
Sbjct: 202 TYVYEGN------WKVQVENGADGYHVSTVHWNYAATQQQR 236
>sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas
fluorescens GN=ndoB PE=3 SV=1
Length = 449
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G+D V+ +++ R F + C HR L C YHGW F +G+ + +P
Sbjct: 59 MGIDEVIVSRQSDGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|A5VA83|MNMG_SPHWW tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
10273) GN=mnmG PE=3 SV=1
Length = 619
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 137 PLSEGRIDQWGRLQ---CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ 193
P +GR W RL GW FS + +PQ ACA +
Sbjct: 203 PRLDGRTIDWARLDRQPSDGEGWTFSALTPHRLVPQL------------ACAITRTNQRT 250
Query: 194 HDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLL--ENLMDPA 251
HD++ + +P + I P + P ++D FG+RD G+++ L E L DP
Sbjct: 251 HDVIRAGLDRSPLFSGAITGVGPRYCPSIEDK--VHRFGDRD---GHQIFLEPEGLDDPT 305
Query: 252 HVP 254
P
Sbjct: 306 VYP 308
>sp|Q96NN9|AIFM3_HUMAN Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1
Length = 605
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 115 VWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKFIP 168
V ++ E+ CPH APL +G + + GR++C +HG CF+ +GD + P
Sbjct: 93 VLLVKDNGEFHALGHKCPHYGAPLVKGVLSR-GRVRCPWHGACFNISTGDLEDFP 146
>sp|Q3TY86|AIFM3_MOUSE Apoptosis-inducing factor 3 OS=Mus musculus GN=Aifm3 PE=2 SV=1
Length = 605
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 115 VWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKFIP 168
V ++ E+ CPH APL +G + + GR++C +HG CF+ +GD + P
Sbjct: 93 VLLVKDNGEFHALGHKCPHYGAPLVKGVLSR-GRVRCPWHGACFNISTGDLEDFP 146
>sp|Q3C1E3|TPDA1_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 1 OS=Comamonas sp. GN=tphA2I PE=1 SV=1
Length = 413
Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 44/198 (22%)
Query: 113 VVVWWDRNENEWRVFADACPHRLAPLS---EGRIDQWGRLQCVYHGWCFSGSGD---CKF 166
+VV D ++ E F + C HR A ++ GR D + QCVYH W ++ GD F
Sbjct: 65 IVVVRDADQ-EIYAFENRCAHRGALIALEKSGRTDSF---QCVYHAWSYNRQGDLTGVAF 120
Query: 167 IPQAPPDGPPVHTFEKA------------CAAVYPSTVQHDI----VWFWPNIAPRYKDI 210
G +F K C V+ S D+ + P I R + +
Sbjct: 121 EKGVKGQGGMPASFCKEEHGPRKLRVAVFCGLVFGS-FSEDVPSIEDYLGPEICERIERV 179
Query: 211 IKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAH-----YGLMR-TR 264
+ H P FT+ +P +++ EN+ D H H + L R ++
Sbjct: 180 L------HKPVEVIGRFTQ-----KLPNNWKLYFENVKDSYHASLLHMFFTTFELNRLSQ 228
Query: 265 KPKVKLDREGGRPVEMSV 282
K V +D GG V S+
Sbjct: 229 KGGVIVDESGGHHVSYSM 246
>sp|Q5NL05|MNMG_ZYMMO tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 /
ZM4 / CP4) GN=mnmG PE=3 SV=3
Length = 621
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 24/119 (20%)
Query: 130 ACPHRLAPLSEGRIDQWGRLQ---CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAA 186
P RL +GR W RLQ W + G + PQ AC+
Sbjct: 204 GTPARL----DGRTIDWARLQRQPSDEDAWTMASYGAGRVAPQI------------ACSL 247
Query: 187 VYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLE 245
+ HDI+ + +P + I+ + P + P ++D FG+RD G+++ LE
Sbjct: 248 TRSNQKTHDIIRAGLDRSPLFSGAIEGRGPRYCPSIEDKIMK--FGDRD---GHQIFLE 301
>sp|Q3C1D5|TPDA2_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 2 OS=Comamonas sp. GN=tphA2II PE=1 SV=1
Length = 413
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 44/198 (22%)
Query: 113 VVVWWDRNENEWRVFADACPHRLAPLS---EGRIDQWGRLQCVYHGWCFSGSGD---CKF 166
+VV D ++ E F + C HR A ++ GR D + QCVYH W ++ GD F
Sbjct: 65 IVVVRDADQ-EIYAFENRCAHRGALIALEKSGRTDSF---QCVYHAWSYNRQGDLTGVAF 120
Query: 167 IPQAPPDGPPVHTFEKA------------CAAVYPSTVQHDI----VWFWPNIAPRYKDI 210
G +F K C V+ S D+ + P I R + +
Sbjct: 121 EKGVKGQGGMPASFCKEEHGPRKLRVAVFCGLVFGS-FSEDVPSIEDYLGPEICERIERV 179
Query: 211 IKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAH-----YGLMR-TR 264
+ H P FT+ +P +++ EN+ D H H + L R ++
Sbjct: 180 L------HKPVEVIGRFTQ-----KLPNNWKLYFENVKDSYHASLLHMFFTTFELNRLSQ 228
Query: 265 KPKVKLDREGGRPVEMSV 282
K V +D GG V S+
Sbjct: 229 KGGVIVDESGGHHVSYSM 246
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 26/186 (13%)
Query: 80 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS 139
+ K + + WYP+M ++D+ P K+LG +++V +R + + D C HR LS
Sbjct: 20 DAKLGFRNHWYPVMFSKEIDEGEPKTLKLLGENLLV--NRIDGKLYCLKDRCLHRGVQLS 77
Query: 140 -EGRIDQWGRLQCVYHGWCFSGSGD--CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDI 196
+ + C YH W + C + P + YP
Sbjct: 78 VKVECKTKSTITCWYHAWTYRWEDGVLCDILTN-----PTSAQIGRQKLKTYPVQEAKGC 132
Query: 197 VWFWPNIAPRYKDIIKTKKPPHI-----PELDDPSFTKLFGNRDIPYGYEVLLENLMDPA 251
V+ + + PP + P D L N+ I + + +EN DP+
Sbjct: 133 VFIY----------LGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPS 182
Query: 252 HVPYAH 257
H+ Y H
Sbjct: 183 HI-YIH 187
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 131 CPHRLAPLS-EGRIDQWGRLQCVYHGWCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVY 188
CPH A + GR+ + +QC +HGW FS +G C +P P E+A +
Sbjct: 122 CPHIGANFNIGGRVVRDNCIQCPFHGWIFSAETGKCVEVPYDEGRIP-----EQAKVTTW 176
Query: 189 PSTVQHDIVWFW---PNIAPRYKDIIKTKKPPHIPELDDPSFTKLFG--NRDIPYGYEVL 243
P +++ ++ W P + + P I E+ D F L G ++ + +
Sbjct: 177 PCIERNNNIYLWYHCDGAEPEW-------EIPEITEITD-GFWHLGGRTEHEVMCHIQEI 228
Query: 244 LENLMDPAHVPYAH 257
EN D AH+ Y H
Sbjct: 229 PENGADIAHLNYLH 242
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 82 KFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG 141
K + + WYP+ ++ + P K+LG +++ +R + D C HR LS+
Sbjct: 22 KLGFRNHWYPVRLASEIAEGTPVPVKLLGEKILL--NRVGGKVYAIQDRCLHRGVTLSD- 78
Query: 142 RIDQWGR--LQCVYHGWCF 158
R++ + + + C YHGW +
Sbjct: 79 RVECYSKNTISCWYHGWTY 97
>sp|P29114|LOX1_HORVU Linoleate 9S-lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2
Length = 862
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 259 GLMRTRKPKVKLDREGGRPVEMSVNKIDINGFIGKQEWGSSKFLA---PCIFFAYTDLMK 315
GL+ T K R G V M N +D+N F G +FL C + T +
Sbjct: 5 GLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV-- 62
Query: 316 DQENGSASSAGAEKKLEQ 333
DQ+NG GAE +LEQ
Sbjct: 63 DQDNGGRGKVGAEAELEQ 80
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 35.4 bits (80), Expect = 0.67, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 129 DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFE 181
D C H +A LSEG +D ++C +HG F+ C +P + P P+ FE
Sbjct: 44 DTCTHGIASLSEGTLDG-DVIECPFHGGAFN---VCTGMPASSPCTVPLGVFE 92
>sp|A5E8G8|MNMG_BRASB tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=mnmG PE=3 SV=1
Length = 625
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 163 DCKFIPQAPPDGPP---------VHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKT 213
D + P D PP + T + C +T HD++ + +P Y IK+
Sbjct: 212 DWSAVEMQPGDDPPEPFSVLTQTITTPQIQCGITRTTTATHDVIRANVHRSPMYSGQIKS 271
Query: 214 KKPPHIPELDDPSFTKLFGNRDIPYGYEVLLE 245
P + P ++D FG+RD G+++ LE
Sbjct: 272 TGPRYCPSVEDKIVR--FGDRD---GHQIFLE 298
>sp|Q6ND15|MNMG_RHOPA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=mnmG PE=3 SV=2
Length = 622
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 175 PPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNR 234
P + T + C +T H+++ + +P Y I++ P + P ++D FG+R
Sbjct: 230 PAITTPQIECGITRTTTATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVK--FGDR 287
Query: 235 DIPYGYEVLL--ENLMDPAHVP 254
D G+++ L E L DP P
Sbjct: 288 D---GHQIFLEPEGLDDPTVYP 306
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 129 DACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPP 176
+AC HR A L + C +HGW FS +G + D P
Sbjct: 96 NACSHRGAELCRRKQGNRSTFTCQFHGWTFSNTGKLLKVKDGQDDNYP 143
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIP 168
+G D V+ + + +VF + C HR + C YHGW + +G+ +P
Sbjct: 79 MGEDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 119 RNEN-EWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162
RN N E +AC HR A L + C +HGW F+ SG
Sbjct: 82 RNRNGELNAMINACSHRGAQLCRHKRGNKTTYTCPFHGWTFNNSG 126
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
>sp|Q03749|CR7AA_BACTU Pesticidal crystal protein cry7Aa OS=Bacillus thuringiensis
GN=cry7Aa PE=2 SV=1
Length = 1138
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 19/84 (22%)
Query: 162 GDCKF------IPQAPPDGPPVHT--FEKAC--AAVYPSTVQHDI----VWFWPNIAPRY 207
GD K+ I Q PPDG P+H + C A++ ST +D ++ W + + Y
Sbjct: 429 GDNKYDLTYDSIDQLPPDGEPIHEKYTHRLCHATAIFKSTPDYDNATIPIFSWTHRSAEY 488
Query: 208 KDIIKTKKPPHIP-----ELDDPS 226
+ I K IP +LDDPS
Sbjct: 489 YNRIYPNKITKIPAVKMYKLDDPS 512
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 109 LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG---DCK 165
+G D VV + + + F + C HR +S C YHGW + +G D
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
Query: 166 FIPQAPPDG 174
P+A P G
Sbjct: 123 LEPRAYPQG 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,192,199
Number of Sequences: 539616
Number of extensions: 7212095
Number of successful extensions: 14147
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 14063
Number of HSP's gapped (non-prelim): 66
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)