Query 015937
Match_columns 398
No_of_seqs 267 out of 2104
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 2E-50 6.7E-55 402.2 23.2 289 83-396 3-306 (349)
2 3n0q_A Putative aromatic-ring 100.0 8.4E-47 2.9E-51 382.7 21.5 296 72-397 25-370 (409)
3 3vca_A Ring-hydroxylating diox 100.0 2.9E-46 9.8E-51 379.2 20.6 296 72-397 27-373 (412)
4 2zyl_A Possible oxidoreductase 100.0 4.8E-44 1.6E-48 360.7 24.1 285 81-394 18-314 (386)
5 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3.1E-43 1.1E-47 360.9 27.8 298 72-396 25-377 (446)
6 2de6_A Terminal oxygenase comp 100.0 2.3E-42 7.8E-47 349.0 23.4 285 77-395 17-344 (392)
7 2gbw_A Biphenyl 2,3-dioxygenas 100.0 1.3E-40 4.3E-45 342.3 17.9 190 72-262 21-217 (454)
8 2bmo_A Oxygenase-alpha NBDO; n 100.0 4.2E-41 1.4E-45 345.2 13.6 191 72-263 20-217 (447)
9 2b1x_A Naphthalene dioxygenase 100.0 7.9E-40 2.7E-44 337.7 21.9 190 72-262 29-226 (470)
10 3gkq_A Terminal oxygenase comp 100.0 2.4E-39 8.2E-44 323.0 24.5 283 78-393 21-343 (389)
11 3gcf_A Terminal oxygenase comp 100.0 4.7E-39 1.6E-43 321.7 24.6 281 77-393 23-346 (394)
12 3gzx_A Biphenyl dioxygenase su 100.0 3.5E-39 1.2E-43 330.8 16.3 190 72-262 41-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 5E-39 1.7E-43 330.9 13.7 188 72-261 39-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 1.3E-26 4.5E-31 191.0 12.2 101 87-202 2-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 1.8E-26 6.1E-31 192.8 12.1 104 88-206 1-106 (111)
16 1fqt_A Rieske-type ferredoxin 99.9 2.5E-26 8.4E-31 192.4 12.8 104 87-205 4-109 (112)
17 2i7f_A Ferredoxin component of 99.9 1.2E-26 3.9E-31 193.0 9.9 102 88-204 3-106 (108)
18 2de6_D Ferredoxin component of 99.9 1.4E-26 4.9E-31 194.9 10.4 104 87-205 3-108 (115)
19 2jza_A Nitrite reductase [NAD( 99.9 3.6E-26 1.2E-30 196.6 12.5 109 87-208 2-115 (130)
20 3dqy_A Toluene 1,2-dioxygenase 99.9 1.8E-26 6.3E-31 191.2 9.8 102 88-204 1-103 (106)
21 3c0d_A Putative nitrite reduct 99.9 3.4E-26 1.2E-30 193.7 11.2 104 87-204 4-112 (119)
22 2jo6_A Nitrite reductase [NAD( 99.9 4.2E-26 1.4E-30 191.2 11.5 102 87-202 5-112 (113)
23 3gce_A Ferredoxin component of 99.9 9.7E-26 3.3E-30 191.5 12.5 103 88-205 10-115 (121)
24 3d89_A Rieske domain-containin 99.9 1.4E-26 4.6E-31 205.4 6.7 121 85-208 13-140 (157)
25 4aiv_A Probable nitrite reduct 99.9 4.8E-26 1.7E-30 192.9 8.8 102 87-202 8-116 (119)
26 1rfs_A Rieske protein; iron-su 99.8 2.1E-21 7.3E-26 168.6 6.7 102 87-203 20-125 (139)
27 1rie_A Rieske iron-sulfur prot 99.8 1E-20 3.5E-25 162.3 10.9 98 87-199 4-128 (129)
28 1g8k_B Arsenite oxidase; molyb 99.8 4.8E-20 1.6E-24 158.9 9.7 98 88-200 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.7 7.4E-21 2.5E-25 163.8 0.0 103 87-204 14-121 (133)
30 4aay_B AROB; oxidoreductase, r 99.8 2.8E-19 9.6E-24 160.9 8.0 97 89-200 51-161 (175)
31 2qjy_C Ubiquinol-cytochrome C 99.7 3.2E-17 1.1E-21 149.1 11.3 96 89-199 49-186 (187)
32 1pp9_E Ubiquinol-cytochrome C 99.7 2.6E-17 9E-22 150.5 10.6 94 92-199 75-195 (196)
33 3cx5_E Cytochrome B-C1 complex 99.7 4E-17 1.4E-21 148.2 11.5 97 87-199 61-184 (185)
34 2nwf_A Ubiquinol-cytochrome C 99.7 3E-17 1E-21 142.7 10.2 93 93-199 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 4.9E-17 1.7E-21 145.0 8.0 69 123-204 79-149 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 9.3E-18 3.2E-22 151.7 1.9 93 95-202 70-165 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 1.5E-15 5.3E-20 139.6 2.3 86 104-202 56-167 (204)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=2e-50 Score=402.23 Aligned_cols=289 Identities=19% Similarity=0.326 Sum_probs=219.0
Q ss_pred ccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcCCC
Q 015937 83 FDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162 (398)
Q Consensus 83 ~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~~G 162 (398)
..+++.||+||.++|| +|+++.++++|++|+|||+.+| +++|+.|+|||||++|+.|++++ +.|+||||||+||.+|
T Consensus 3 ~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G-~v~a~~n~CpHrg~~L~~G~~~~-~~i~CpyHgw~fd~~G 79 (349)
T 3gke_A 3 TFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDG-VVAALLDICPHRFAPLSDGILVN-GHLQCPYHGLEFDGGG 79 (349)
T ss_dssp CCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTS-CEEEEESSCTTTCCCGGGCEEET-TEEECTTTCCEECTTC
T ss_pred cccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCC-cEEEEeCcCCCCCcCCccCCccc-eEEEECCCCCEEcCCC
Confidence 3577999999999999 8999999999999999999887 99999999999999999999875 5899999999999999
Q ss_pred ccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCCCCCCCCeeeeeEEEEecChhh
Q 015937 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEV 242 (398)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~nwk~ 242 (398)
+|+.+|+... ..+.+.+|++|+|++++|+||||+++++.+. ...+|.++++++++|......++++||||+
T Consensus 80 ~~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~ 150 (349)
T 3gke_A 80 QCVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALAD----PGAIPDFGCRVDPAYRTVGGYGHVDCNYKL 150 (349)
T ss_dssp CEEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGCC----GGGSCCCGGGGCTTSEEEEEEEEESSCHHH
T ss_pred CccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCCc----ccccCCccccCCCCCEEEeEEEEEecCHHh
Confidence 9999996221 1245788999999999999999998765221 123566666677778766667899999999
Q ss_pred hhhhcCCCCccccccccccccCCC---ceeeccCCCcceEE--EeccccCC--------Cccc-ccccceEEEeCeeEEE
Q 015937 243 LLENLMDPAHVPYAHYGLMRTRKP---KVKLDREGGRPVEM--SVNKIDIN--------GFIG-KQEWGSSKFLAPCIFF 308 (398)
Q Consensus 243 ~~EN~lD~~H~~~vH~~~~~~~~~---~~~~~~e~~~~~~~--~~~~~~~~--------g~~~-~~~~~~~~f~~P~~~~ 308 (398)
++||++|+||++|+|+++++.... ......+ +..+.. .+...... +..+ .+++..++|.+||+..
T Consensus 151 ~~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~ 229 (349)
T 3gke_A 151 LVDNLMDLGHAQYVHRANAQTDAFDRLEREVIVG-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAML 229 (349)
T ss_dssp HHHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEEC-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEE
T ss_pred HHHhccccccchhccchhhcCccccCCCCEEEEc-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEE
Confidence 999999999999999999975441 1111111 112222 12111110 1111 1245678999999977
Q ss_pred EEeecccccccCCCccccchhhccCcceEEEEEEEeCCCCeEEEEEEeecCcccchhccchHHHHHHhhhhHH-HHHHHH
Q 015937 309 AYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLIL-DSDLYL 387 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~r~f~~~~~~~~~~~~~h~~~~~V~-~ED~~i 387 (398)
...+...+|. | ...+..++.++.|+|+++++||++|.++|||..+++.+.+.|. .++++|| +||+.|
T Consensus 230 ~~~~~~~~g~--p--------~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~~--~~~~~if~~ED~~i 297 (349)
T 3gke_A 230 NFIAVAPEGT--P--------KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVLR--SWQAQALVKEDKVV 297 (349)
T ss_dssp EEEEEEETTS--C--------GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHHH--HHHHHHTTTHHHHH
T ss_pred EEEecccCCC--C--------CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHHH--HHHhhhhhhhhHHH
Confidence 6655432220 1 1123346788899999999999999999999876555545443 6788999 999999
Q ss_pred HHHHhhhhc
Q 015937 388 LHVEVIPVS 396 (398)
Q Consensus 388 le~qqr~l~ 396 (398)
||+||+++.
T Consensus 298 le~Qq~~l~ 306 (349)
T 3gke_A 298 VEAIERRRA 306 (349)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHhh
Confidence 999999864
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=8.4e-47 Score=382.74 Aligned_cols=296 Identities=16% Similarity=0.208 Sum_probs=213.8
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCC-CccCCCceE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRL 149 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~-G~~~~~~~l 149 (398)
.++++|++|++.+|++.|++||++++|+ +|++++++++|++|+|+|+.+| +++||.|+|||||++|+. |.+.+ +.|
T Consensus 25 ~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG-~v~A~~n~C~Hrga~L~~~g~~~~-~~i 102 (409)
T 3n0q_A 25 TDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADN-VIRAFHNACRHRGSVICKAKKGNN-PKL 102 (409)
T ss_dssp HCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESCCTTTCCCSCCSSEEEC-SSE
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCC-CEEeecCcCCcCcCCccCcCccCC-CEE
Confidence 3799999999999999999999999994 6999999999999999999888 999999999999999996 77765 479
Q ss_pred EccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCCCCCCCCee
Q 015937 150 QCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTK 229 (398)
Q Consensus 150 ~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~ 229 (398)
+||||||+||.+|+|+.+|..+. .+++.+.+|++|+|++++|+|||++++++++++.......+.+..++...+..
T Consensus 103 ~CpyHgw~fd~dG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~ 178 (409)
T 3n0q_A 103 VCPYHQWTYELDGRLLWARDMGP----DFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKV 178 (409)
T ss_dssp ECTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTCGGGEEE
T ss_pred EECCCCCEEeCCCCcccCCcCCc----ccCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhhhhhhhhccccCCCeEE
Confidence 99999999999999999997642 23467789999999999999999998876543221111112233333334443
Q ss_pred e-eeEEEEecChhhhhhhcCCCCccccccccccccCCCce-----ee---c--------c--CCCcc----------eE-
Q 015937 230 L-FGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPKV-----KL---D--------R--EGGRP----------VE- 279 (398)
Q Consensus 230 ~-~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~~~~-----~~---~--------~--e~~~~----------~~- 279 (398)
. ...++++||||+++||++|+||++++|+++++...... .. . . ..+.+ ..
T Consensus 179 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 258 (409)
T 3n0q_A 179 AHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRV 258 (409)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTSSEEE
T ss_pred eeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccccceee
Confidence 2 34678899999999999999999999999976421100 00 0 0 00001 00
Q ss_pred --EEeccc----cCCC----------cccccccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEEEE
Q 015937 280 --MSVNKI----DING----------FIGKQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICV 343 (398)
Q Consensus 280 --~~~~~~----~~~g----------~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (398)
+.+... ...| +..........+++||+++..+ ++++.++.+.
T Consensus 259 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------------------pd~~~~~~~~ 316 (409)
T 3n0q_A 259 ARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL----------------------SDHSIVFRVT 316 (409)
T ss_dssp EEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC----------------------SSCEEEEEEE
T ss_pred eeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC----------------------CCEEEEEEEE
Confidence 111100 0000 1111223456789999998763 3578889999
Q ss_pred eCCCCeEEEEEEeecCcccc--hhccchHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 015937 344 PVSPGHSRLIWAFPRNFQTW--IDKVVPRWIFHIGQNLILDSDLYLLHVEVIPVSV 397 (398)
Q Consensus 344 P~s~~~tr~~~~~~r~f~~~--~~~~~~~~~~h~~~~~V~~ED~~ile~qqr~l~~ 397 (398)
|+++++|++.+.++++.... .+.-... ...+.+.|.+||..|+|+.|+|++|
T Consensus 317 P~~p~~t~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~s 370 (409)
T 3n0q_A 317 PISPTETEVTTKWLVHKDAVEGVDYDLQR--LTEVWIATNDEDREVVEFNQMGINS 370 (409)
T ss_dssp EEETTEEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ECCCCeEEEEEEEEEcCcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999997666543221 1111121 2255688999999999999999987
No 3
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=2.9e-46 Score=379.17 Aligned_cols=296 Identities=18% Similarity=0.229 Sum_probs=213.2
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCC-CCccCCCceE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS-EGRIDQWGRL 149 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls-~G~~~~~~~l 149 (398)
.++++|++|++.+|++.|++||++++|+ +|++++++++|++|+|+|+.+| +++||.|+|||||++|+ .|.+.+ +.|
T Consensus 27 ~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG-~v~A~~n~CpHrga~L~~~g~~~~-~~i 104 (412)
T 3vca_A 27 TSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDG-EVRAFHNSCRHRGSLICKARQGQV-AKL 104 (412)
T ss_dssp HCHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTS-CEEEEESSCTTTCCCSCCSSEEEC-SSE
T ss_pred CCHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCC-CEEEecccCCCCCCEeecccccCC-CEE
Confidence 3799999999999999999999999995 6999999999999999999888 99999999999999998 677765 479
Q ss_pred EccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCCCCCCCCee
Q 015937 150 QCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTK 229 (398)
Q Consensus 150 ~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~ 229 (398)
+||||||+||.+|+|+.+|..+. .+.+.+.+|++|+|++++|+|||++++++++++.......+.+..++...+..
T Consensus 105 ~CPyHgw~fdldG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~~~~~~~~ 180 (412)
T 3vca_A 105 VCPYHQWTYELDGKLIWANDMGP----DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKV 180 (412)
T ss_dssp ECTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTCGGGEEE
T ss_pred EcCCCCCEEcCCCccccCCcccc----ccCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhhhHHhhccccCCCeEE
Confidence 99999999999999999997542 23456789999999999999999998776443221111112232333333433
Q ss_pred e-eeEEEEecChhhhhhhcCCCCccccccccccccCCCc-----eee-c-----------c-C-CCcc----------eE
Q 015937 230 L-FGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKPK-----VKL-D-----------R-E-GGRP----------VE 279 (398)
Q Consensus 230 ~-~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~~~-----~~~-~-----------~-e-~~~~----------~~ 279 (398)
. ...++++||||+++||++|+||++++|+++++..... ... . . + .+.+ ..
T Consensus 181 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 260 (412)
T 3vca_A 181 AFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYR 260 (412)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTTSSEE
T ss_pred eEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCcccccccccCcee
Confidence 2 3467889999999999999999999999987632110 000 0 0 0 0000 00
Q ss_pred ---EEeccc----cCCC----------cccccccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEEE
Q 015937 280 ---MSVNKI----DING----------FIGKQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFIC 342 (398)
Q Consensus 280 ---~~~~~~----~~~g----------~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (398)
+.+... ...| +..........+++||+++..+ ++++.++.+
T Consensus 261 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------------------pd~~~~~~~ 318 (412)
T 3vca_A 261 LARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL----------------------PDHSLTFRV 318 (412)
T ss_dssp EEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC----------------------SSCEEEEEE
T ss_pred eeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC----------------------CCEEEEEEE
Confidence 111100 0001 1111223456789999998753 357888999
Q ss_pred EeCCCCeEEEEEEeecCcccc--hhccchHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 015937 343 VPVSPGHSRLIWAFPRNFQTW--IDKVVPRWIFHIGQNLILDSDLYLLHVEVIPVSV 397 (398)
Q Consensus 343 ~P~s~~~tr~~~~~~r~f~~~--~~~~~~~~~~h~~~~~V~~ED~~ile~qqr~l~~ 397 (398)
.|+++++|++.+.+++..... .+.-... ...+.+.|.+||..|+|+.|+|++|
T Consensus 319 ~P~~~~~t~v~~~~~~~~d~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~S 373 (412)
T 3vca_A 319 MPISPTETEVTTTWLVHKDAVEGVDYDLKR--LTEVWIATNDEDREIVETNQQGILS 373 (412)
T ss_dssp EEEETTEEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EECCCCeEEEEEEEEEccccccCccHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999986666543221 1111122 2256678999999999999999987
No 4
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.8e-44 Score=360.66 Aligned_cols=285 Identities=21% Similarity=0.333 Sum_probs=203.5
Q ss_pred ccccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC
Q 015937 81 EKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG 160 (398)
Q Consensus 81 ~~~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~ 160 (398)
...+|.+.|++||++++|++|+++.++++|++|||+|+.+| +++||.|+|||||++|+.|++++ +.|+||||||+||.
T Consensus 18 ~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G-~v~a~~n~CpHrga~L~~g~~~~-~~i~CpyHgw~f~~ 95 (386)
T 2zyl_A 18 LPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHG-DLKVLDGYCRHMGGDLSEGTVKG-DEVACPFHDWRWGG 95 (386)
T ss_dssp CCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTS-CEEEEESBCTTTCCBGGGSEEET-TEEECTTTCCEEET
T ss_pred CchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCC-CEEEEcCcCCCCCCCCCCCcccC-CEEEeCCCCCEECC
Confidence 34678889999999999988999999999999999999888 99999999999999999999875 57999999999999
Q ss_pred CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCCCCCCCCeee-eeEEEEe-c
Q 015937 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKL-FGNRDIP-Y 238 (398)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~-~~~~~~~-~ 238 (398)
+|+|+.+|+... .+...+|++|+|++++|+||||+++++.+.. ....+|.++.++.++|... ....+++ |
T Consensus 96 ~G~~~~~P~~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 167 (386)
T 2zyl_A 96 DGRCKLVPYARR------TPRMARTRSWTTDVRSGLLFVWHDHEGNPPD--PAVRIPEIPEAASDEWTDWRWNRILIEGS 167 (386)
T ss_dssp TSBEEECTTCSS------CCTTCBCCEECEEEETTEEEEEECTTCCCCC--GGGCCCCCGGGGCTTBCCCEEEEEEEESS
T ss_pred CCCccccCcccc------cCcccCcceEeEEEECCEEEEEECCccCCCc--ccccCcccccccCCCceEEEEEEEEEcCc
Confidence 999999997543 1356789999999999999999986543221 1234567777777776543 4467889 9
Q ss_pred ChhhhhhhcCCCCccccccccccccCCCceeeccCCCcceEEEec-cccC---CC-cccc-cccceEEEeCeeEEEEEee
Q 015937 239 GYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVN-KIDI---NG-FIGK-QEWGSSKFLAPCIFFAYTD 312 (398)
Q Consensus 239 nwk~~~EN~lD~~H~~~vH~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~---~g-~~~~-~~~~~~~f~~P~~~~~~~~ 312 (398)
|||.++||++|+||++|+|+++..... ...+.....++... ..+. .+ ..+. ..+....|+.|++++..+.
T Consensus 168 nwk~~~EN~~D~~H~~~~H~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~ 243 (386)
T 2zyl_A 168 NCRDIIDNVTDMAHFFYIHFGLPTYFK----NVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLH 243 (386)
T ss_dssp CGGGGGGGGGCSTHHHHTTCEEEEEEE----EEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEE
T ss_pred CHHhHhhhcccccchhhhCcCcccccc----ccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEee
Confidence 999999999999999999998753210 00011111111100 0000 00 1111 1234567889998776543
Q ss_pred cccccccCCCccccchhhccCcceEEEEEEEeCCCCeEEEEEEeecCcccchh-c---cchHHHHHHhhhhHHHHHHHHH
Q 015937 313 LMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWID-K---VVPRWIFHIGQNLILDSDLYLL 388 (398)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~r~f~~~~~-~---~~~~~~~h~~~~~V~~ED~~il 388 (398)
....+ .....+.++.++|+++++|++++.+++++....+ . ...+ .+..+..++|.||..|+
T Consensus 244 ~~~~g--------------~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vf~ED~~I~ 308 (386)
T 2zyl_A 244 NRYGN--------------YKSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSR-VFTEGVSKGFLQDVEIW 308 (386)
T ss_dssp EEETT--------------EEEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred eccCC--------------cceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHH-HHHHHHHHhhHHHHHHH
Confidence 21000 1123456677799999999999987766532111 0 1111 13356788999999999
Q ss_pred HHHhhh
Q 015937 389 HVEVIP 394 (398)
Q Consensus 389 e~qqr~ 394 (398)
|.||+.
T Consensus 309 e~q~~~ 314 (386)
T 2zyl_A 309 KHKTRI 314 (386)
T ss_dssp TTCCCC
T ss_pred Hhcccc
Confidence 998764
No 5
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3.1e-43 Score=360.95 Aligned_cols=298 Identities=16% Similarity=0.197 Sum_probs=204.4
Q ss_pred CCchhcc--ccccccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-CCCce
Q 015937 72 RELETNS--QEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGR 148 (398)
Q Consensus 72 ~~~~~~~--~E~~~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~-~~~~~ 148 (398)
.++++|+ +|++.+|++.|++||++++|++|++++++++|++|||+| .+| +++|+.|+|||||++|+.|.+ ..++.
T Consensus 25 ~~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G-~v~a~~n~CpHrga~L~~g~~~~~~~~ 102 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNG-KVFALKDQCLHRGVRLSEKPTCFTKST 102 (446)
T ss_dssp HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETT-EEEEEESSCTTTCCCGGGSCCCSSTTE
T ss_pred cCHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCC-EEEEEeCcCCCCcCCCCCCccCCCCCE
Confidence 5789999 999999999999999999997799999999999999999 577 999999999999999999984 23468
Q ss_pred EEccCCCeEEcC-CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCC----ccccccccCCCCCCC---
Q 015937 149 LQCVYHGWCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP----RYKDIIKTKKPPHIP--- 220 (398)
Q Consensus 149 l~CpyHGw~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~----~~~~~~~~~~~p~~p--- 220 (398)
|+||||||+||. +|+|+.+|+.+.. ..+.+.+|++|+|++++|+||||+++++ .+.. +.+..++.++
T Consensus 103 i~CpyHgw~fd~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~-l~~~l~~~~~~~~ 177 (446)
T 1z01_A 103 ISCWYHGFTFDLETGKLVTIVANPED----KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPP-LAHDLPFRFPERS 177 (446)
T ss_dssp EECTTTCEEEETTTCBEEEETTCTTC----TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCC-GGGGSCCCTTTTT
T ss_pred EEeCCCCeEEeCCCCCccccCCCccc----cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCC-hhHhccchhhhhh
Confidence 999999999996 9999999875532 2345788999999999999999998643 1100 1112221121
Q ss_pred ------------CCCCCCCeeeeeEEEEecChhhhhhhcCCCCccccccccccccCC-----C-ce---------eeccC
Q 015937 221 ------------ELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-----P-KV---------KLDRE 273 (398)
Q Consensus 221 ------------~~~~~~~~~~~~~~~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~-----~-~~---------~~~~e 273 (398)
.+.+.++......++++||||+++||++|+||+ |+|+++++... + .. .+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
T 1z01_A 178 EQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDD 256 (446)
T ss_dssp TTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCS
T ss_pred hccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEec
Confidence 233344544344678999999999999999999 99999874211 0 00 00000
Q ss_pred C-CcceEEEe-cc-------ccCCCcc---cccccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEE
Q 015937 274 G-GRPVEMSV-NK-------IDINGFI---GKQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFI 341 (398)
Q Consensus 274 ~-~~~~~~~~-~~-------~~~~g~~---~~~~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
. ..-+...+ .. ....+.. +...+....+++||+++.... .....+.+..
T Consensus 257 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~-------------------p~~~~~~~~~ 317 (446)
T 1z01_A 257 DGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENW-------------------PEEHVVQYEW 317 (446)
T ss_dssp SSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETC-------------------SSTTCEEEEE
T ss_pred CCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEecc-------------------CCCCeEEEEE
Confidence 0 00000000 00 0000100 111234556789998866421 1124567788
Q ss_pred EEeCCCCeEEEEEEeecCcccch--hccch---HHHHHHhhhhHHHHHHHHHHHHhhhhc
Q 015937 342 CVPVSPGHSRLIWAFPRNFQTWI--DKVVP---RWIFHIGQNLILDSDLYLLHVEVIPVS 396 (398)
Q Consensus 342 ~~P~s~~~tr~~~~~~r~f~~~~--~~~~~---~~~~h~~~~~V~~ED~~ile~qqr~l~ 396 (398)
++|+++++|++++.+++++.... ..+.. .++.......|+.||..++|+||+++.
T Consensus 318 ~~Pi~~~~t~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~ 377 (446)
T 1z01_A 318 YVPITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYY 377 (446)
T ss_dssp EEESSSSEEEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhc
Confidence 89999999999988888765321 11110 011122345688999999999999864
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=2.3e-42 Score=349.03 Aligned_cols=285 Identities=16% Similarity=0.235 Sum_probs=195.2
Q ss_pred ccccccccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccC-CCceEEccCCC
Q 015937 77 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHG 155 (398)
Q Consensus 77 ~~~E~~~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~-~~~~l~CpyHG 155 (398)
...|++.+|++.|++||++++|++|+++.++++|++|||+|+ +| +++|+.|+|||||++|+.|.+. .++.|+|||||
T Consensus 17 ~~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G-~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHg 94 (392)
T 2de6_A 17 PYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DG-KLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHA 94 (392)
T ss_dssp HHHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TT-EEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTC
T ss_pred ccchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CC-EEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCC
Confidence 367889999999999999999977999999999999999996 77 9999999999999999999864 34689999999
Q ss_pred eEEcC-CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCC-CCCCCCCCeeeeeE
Q 015937 156 WCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI-PELDDPSFTKLFGN 233 (398)
Q Consensus 156 w~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~-p~~~~~~~~~~~~~ 233 (398)
|+||. +|+|+.+|+.+.. ..+.+.+|++|+|++++|+||||++++..+. ..+.+ +++.+.++......
T Consensus 95 w~f~~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~------l~~~l~~~~~~~~~~~~~~~ 164 (392)
T 2de6_A 95 WTYRWEDGVLCDILTNPTS----AQIGRQKLKTYPVQEAKGCVFIYLGDGDPPP------LARDTPPNFLDDDMEILGKN 164 (392)
T ss_dssp EEEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSSCCC------GGGGSCTTTTCTTEEEEEEE
T ss_pred CEEcCCCCccccccCCccc----cccccCCCceEeEEEECCEEEEEeCCCCCCC------hhHhccccccCCCeEEEEEE
Confidence 99996 9999999876532 2345688999999999999999997533211 11122 35555666554456
Q ss_pred EEEecChhhhhhhcCCCCccccccccccccCCC----ceeecc-CCCcceEEEeccc-----------c----------C
Q 015937 234 RDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP----KVKLDR-EGGRPVEMSVNKI-----------D----------I 287 (398)
Q Consensus 234 ~~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~~----~~~~~~-e~~~~~~~~~~~~-----------~----------~ 287 (398)
.+++||||+++||++|+||+ |+|+++++.... ...... .......+.+... . .
T Consensus 165 ~~~~~nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~ 243 (392)
T 2de6_A 165 QIIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTI 243 (392)
T ss_dssp EEESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEE
T ss_pred EEEecChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCcccccccccc
Confidence 78999999999999999999 999998742110 000000 0000001111100 0 0
Q ss_pred CCcc------ccc-ccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEEEEeCCCCeEEEEEEeecCc
Q 015937 288 NGFI------GKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNF 360 (398)
Q Consensus 288 ~g~~------~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~r~f 360 (398)
.+.. +.. .+....+.+|+++..... | .....++..++|+++++|++++.+++++
T Consensus 244 ~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~--------p-----------~~~~~~~~~~~Pi~~~~t~~~~~~~~~~ 304 (392)
T 2de6_A 244 GGEVVREGAYGEKIVANDISIWLPGVLKVNPF--------P-----------NPDMMQFEWYVPIDENTHYYFQTLGKPC 304 (392)
T ss_dssp TTEEEEECEECSBCCCCEEEEETTTEEEEESC--------S-----------STTCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccceeeccccCCcccceeEEEecccceecccc--------C-----------CCCEEEEEEEeecCCCcEEEEEEEecCC
Confidence 0000 000 122334557877644211 1 1234556678999999999999888876
Q ss_pred ccchhccchHH-------HHHHhhhhHHHHHHHHHHHHhhhh
Q 015937 361 QTWIDKVVPRW-------IFHIGQNLILDSDLYLLHVEVIPV 395 (398)
Q Consensus 361 ~~~~~~~~~~~-------~~h~~~~~V~~ED~~ile~qqr~l 395 (398)
... +.. ..+ +.......|+.||+.++|+||+++
T Consensus 305 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~qD~~i~e~qq~~~ 344 (392)
T 2de6_A 305 AND-EER-KKYEQEFESKWKPMALEGFNNDDIWAREAMVDFY 344 (392)
T ss_dssp SSH-HHH-HHHHHHHHHTHHHHTTTTTTHHHHHHHHHTHHHH
T ss_pred CCH-HHH-HHHHHHHHHHHHHhhccCCChhhHHHHHhhhhhh
Confidence 542 111 111 011223567899999999999964
No 7
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=1.3e-40 Score=342.27 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=151.6
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~ 150 (398)
.++++|++|++.+|.+.|++||++++|+ +|+++.+.++|++|+|+|+.+| +++||.|+|||||++|+.|..+..+.|+
T Consensus 21 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G-~v~a~~n~CpHrga~L~~g~~g~~~~i~ 99 (454)
T 2gbw_A 21 WDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDG-TFRAFINSCSHRGNQICHADSGNAKAFV 99 (454)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESSCTTTCCCSCCCSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCC-CEEEEeccCCCCCCCCcccccCCcCEEE
Confidence 4799999999999999999999999996 6999999999999999999888 9999999999999999998774345899
Q ss_pred ccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCC-CCC--CCC
Q 015937 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPE-LDD--PSF 227 (398)
Q Consensus 151 CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~-~~~--~~~ 227 (398)
||||||+||.+|+|+.+|......+..+.+.+.+|++|+|++++|+|||++++++.+++.......+.+.. ++. .++
T Consensus 100 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~~~~~l~~~~~~~~~~~ 179 (454)
T 2gbw_A 100 CNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGGGM 179 (454)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGGGHHHHHHHHTTTTTCE
T ss_pred eCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhhhHHHHHHHHhcCCCce
Confidence 99999999999999999986542221244567789999999999999999987754443211111111111 121 233
Q ss_pred eee--eeEEEEecChhhhhhhc-CCCCccccccccccc
Q 015937 228 TKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (398)
Q Consensus 228 ~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~~ 262 (398)
... ...++++||||+++||+ +|+||++++|..++.
T Consensus 180 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 180 ELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp EEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred EEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 332 34578999999999999 799999999977664
No 8
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=4.2e-41 Score=345.19 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=150.8
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~ 150 (398)
.++++|++|++.+|.+.|++||++++|+ +|+++.++++|++|||+|+.+| +++||.|+|||||++|+.|.++.++.|+
T Consensus 20 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G-~v~a~~n~CpHrga~L~~g~~g~~~~l~ 98 (447)
T 2bmo_A 20 GDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDG-SVRAFLNVCRHRGKTLVHAEAGNAKGFV 98 (447)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESBCTTTCCBCCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCC-CEEEEeccCcCCCCCccccccCCcCeEE
Confidence 4799999999999999999999999995 6999999999999999999888 9999999999999999998875446899
Q ss_pred ccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeec-cEEecCeEEEccCCCCccccccccCCCCCCCC-CC-CCCC
Q 015937 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYP-STVQHDIVWFWPNIAPRYKDIIKTKKPPHIPE-LD-DPSF 227 (398)
Q Consensus 151 CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~-v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~-~~-~~~~ 227 (398)
||||||+||.+|+|+.+|......+..+.+.+.+|++|+ |++++|+|||++++++.+++.......+.+.. ++ ..++
T Consensus 99 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (447)
T 2bmo_A 99 CGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGL 178 (447)
T ss_dssp CTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHHHHHTTHHHHHHHHHTTTSCE
T ss_pred CCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHHHHhccHHHHHHHHhccCCCe
Confidence 999999999999999999753211111335667899998 99999999999987754432211000000111 11 2234
Q ss_pred eee--eeEEEEecChhhhhhhc-CCCCcccccccccccc
Q 015937 228 TKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMRT 263 (398)
Q Consensus 228 ~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~~~ 263 (398)
... ...++++||||+++||+ +|+||++++|..+++.
T Consensus 179 ~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 179 ELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred EEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 433 33578999999999999 7999999999877653
No 9
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=7.9e-40 Score=337.71 Aligned_cols=190 Identities=14% Similarity=0.154 Sum_probs=150.3
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~ 150 (398)
.++++|++|++.+|.+.|++||++++|+ +|+++.++++|++|+|+|+.+| +++||.|+|||||++|+.|.+++.+.|+
T Consensus 29 td~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G-~v~a~~n~C~Hrga~L~~g~~~~~~~i~ 107 (470)
T 2b1x_A 29 NDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGG-EIRGHLNACRHRGMQVCRAEMGNTSHFR 107 (470)
T ss_dssp SCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESSCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCC-CEEEEecccCCCCCEeeccCcCCCCEEE
Confidence 4899999999999999999999999995 5889999999999999999888 9999999999999999999876545899
Q ss_pred ccCCCeEEcCCCccccCCCCCCCCCCCCccccccceee-ccEEecCeEEEccCCCCccccccccCCCCCCC---CCCCCC
Q 015937 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVY-PSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIP---ELDDPS 226 (398)
Q Consensus 151 CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y-~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p---~~~~~~ 226 (398)
||||||+||.+|+|+.+|..+...+..+.+.+.+|..+ .|++++|+|||++++++.++++........+. .....+
T Consensus 108 CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 187 (470)
T 2b1x_A 108 CPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAG 187 (470)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGGHHHHHHHHCSSSSC
T ss_pred ECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcchhHHHHHHhccCCCC
Confidence 99999999999999999986432221234556788888 57778999999998775443221110000111 011233
Q ss_pred Ceee--eeEEEEecChhhhhhhc-CCCCccccccccccc
Q 015937 227 FTKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (398)
Q Consensus 227 ~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~~vH~~~~~ 262 (398)
+... ...++++||||+++||+ +|+||++++|++++.
T Consensus 188 ~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 188 LQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp EEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred eEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 4333 34678999999999999 999999999999865
No 10
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=2.4e-39 Score=322.97 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=197.1
Q ss_pred cccccccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-CCCceEEccCCCe
Q 015937 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGRLQCVYHGW 156 (398)
Q Consensus 78 ~~E~~~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~-~~~~~l~CpyHGw 156 (398)
.+|++.+|++.|++||.+++|++|+++.++++|++|+|+| .+| +++|+.|+|||||++|+.|.+ ..++.|+||||||
T Consensus 21 ylE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG-~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 98 (389)
T 3gkq_A 21 YIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDG-VVHAIADRCLHRGVTLSDKVECYSKATISCWYHGW 98 (389)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETT-EEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCE
T ss_pred hhhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCC-eEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCC
Confidence 4799999999999999999998899999999999999999 577 999999999999999999974 2345899999999
Q ss_pred EEcC-CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCc-cccccccCCCCCCCCCCCCCCeeeeeEE
Q 015937 157 CFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPR-YKDIIKTKKPPHIPELDDPSFTKLFGNR 234 (398)
Q Consensus 157 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~-~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 234 (398)
+||. +|+|+.+|..+.. ..+.+.+|++|+|++++|+|||++++++. ++ .+..+ +.+.+.++.......
T Consensus 99 ~Fdl~dG~cv~iP~~P~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL---~e~l~---~~~~~~~~~~~~~~~ 168 (389)
T 3gkq_A 99 TYRWDNGKLVDILTNPTS----VQIGRHALKTYPVREEKGLVFLFVGDQEPHDL---AEDVP---PGFLDADLAVHGQHR 168 (389)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSCCCCG---GGGSC---TTTTCTTEEEEEEEE
T ss_pred EEECCCCCeecccCCccc----ccccccCCcEEEEEEECCeEEEecCCCCCCCc---hhhcc---hhccCCceEEEeEEE
Confidence 9997 9999999976542 22456789999999999999999965432 22 11111 235555665555567
Q ss_pred EEecChhhhhhhcCCCCccccccccccccCCC----ceeecc-CCCcceEEEeccccCCCcc------------------
Q 015937 235 DIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP----KVKLDR-EGGRPVEMSVNKIDINGFI------------------ 291 (398)
Q Consensus 235 ~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~~----~~~~~~-e~~~~~~~~~~~~~~~g~~------------------ 291 (398)
+++||||.++||++|+||+ ++|+++++.... ...... +++....+........|+.
T Consensus 169 ~i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~ 247 (389)
T 3gkq_A 169 VVDANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQ 247 (389)
T ss_dssp EESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTE
T ss_pred EEecCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCc
Confidence 8999999999999999999 999999852210 001001 1111111222221122211
Q ss_pred -------cc-cccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEEEEeCCCCeEEEEEEeecCcccc
Q 015937 292 -------GK-QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTW 363 (398)
Q Consensus 292 -------~~-~~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~r~f~~~ 363 (398)
+. .......+..|++...... +.+...+...++|++.++++++-.+.+.+...
T Consensus 248 ~~~~~~~~~~~~~~~~s~~lP~v~~v~~~-------------------~~~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~ 308 (389)
T 3gkq_A 248 PAIQGHMGSKMVAISISVWLPGVLKVDPF-------------------PDPTLTQFEWYVPIDEGHHLYLQMLGRRVGSE 308 (389)
T ss_dssp EEEECBCCSBCCCCEEEEETTTEEEEESC-------------------SSTTCEEEEEEEEEETTEEEEEEEEEEECSSH
T ss_pred ccccCCCCCcccceeEEEEecCeeEeccC-------------------CCCCeEEEEEEeeccCCeEEEEEEEEEEcCCH
Confidence 11 0123456677888765521 23356667777999999999997777655432
Q ss_pred hh------ccchHHHHHHhhhhHHHHHHHHHHHHhh
Q 015937 364 ID------KVVPRWIFHIGQNLILDSDLYLLHVEVI 393 (398)
Q Consensus 364 ~~------~~~~~~~~h~~~~~V~~ED~~ile~qqr 393 (398)
-+ ++-.+|.. .-.+...+.|...-|+.|.
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~ 343 (389)
T 3gkq_A 309 EEARSFEAEFREKWVE-LALNGFNDDDILARRSMEP 343 (389)
T ss_dssp HHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhhccccchhHHHHHHHHH
Confidence 21 11112221 2246778899988888773
No 11
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=4.7e-39 Score=321.70 Aligned_cols=281 Identities=18% Similarity=0.238 Sum_probs=196.1
Q ss_pred ccccccccccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-CCCceEEccCCC
Q 015937 77 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGRLQCVYHG 155 (398)
Q Consensus 77 ~~~E~~~~~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~-~~~~~l~CpyHG 155 (398)
-.+|++.+|++.|++||.+++|++|+++.++++|++|+|+| .+| +++|+.|+|||||++|+.|.+ ..++.|+|||||
T Consensus 23 ~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG-~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHG 100 (394)
T 3gcf_A 23 RYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKG-EVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHG 100 (394)
T ss_dssp HHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETT-EEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTC
T ss_pred hhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCC-eEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCC
Confidence 35688999999999999999998899999999999999999 577 999999999999999999974 234589999999
Q ss_pred eEEcC-CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCc-cccccccCCCCCC-CCCCCCCCeeeee
Q 015937 156 WCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPR-YKDIIKTKKPPHI-PELDDPSFTKLFG 232 (398)
Q Consensus 156 w~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~-~~~~~~~~~~p~~-p~~~~~~~~~~~~ 232 (398)
|+||. +|+|+.+|+.++. ..+.+.+|++|+|++++|+|||++++++. ++ . +.+ +.+.+.++.....
T Consensus 101 W~Fdl~dG~cv~iP~~p~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL---~----e~L~~~~~d~~~~~~~~ 169 (394)
T 3gcf_A 101 WTYDLDDGRLVDVLTSPGS----PVIGKIGIKVYPVQVAQGVVFVFIGDEEPHAL---S----EDLPPGFLDEDTHLLGI 169 (394)
T ss_dssp EEEETTTCBEEEETTSTTC----TTTTSCBCCEECEEEETTEEEEEESSSCCCCG---G----GGSCTTTTCTTEEEEEE
T ss_pred cEEECCCCceeccCCCccc----ccccccCceEEEEEEECCcEEEecCCCCCCCc---h----hhcchhhcCCceEEEeE
Confidence 99997 8999999976542 12456789999999999999999975432 22 1 122 2455556665555
Q ss_pred EEEEecChhhhhhhcCCCCccccccccccccCC---C-ceeecc-CCCcceEEEeccccCCCcc----------------
Q 015937 233 NRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KVKLDR-EGGRPVEMSVNKIDINGFI---------------- 291 (398)
Q Consensus 233 ~~~~~~nwk~~~EN~lD~~H~~~vH~~~~~~~~---~-~~~~~~-e~~~~~~~~~~~~~~~g~~---------------- 291 (398)
..+++||||.++||++|+||+ |+|+++++... . ...... +.+ +...+......|..
T Consensus 170 ~~~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~kg~~~~~~~~~~pv~~~~~~ 246 (394)
T 3gcf_A 170 RRTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRD--AMQVYDENWPKGVLDRLSENYMPVFEATLD 246 (394)
T ss_dssp EEEESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTT--SEEEECSSSSCEEEECHHHHEEEECEEEET
T ss_pred EEEEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCc--eEEeccCCCCcchhhhhhcccccccccccc
Confidence 688999999999999999999 99999986321 0 011100 001 00011111112210
Q ss_pred ----------cc--cccceEEEeCeeEEEEEeecccccccCCCccccchhhccCcceEEEEEEEeCCCCeEEEEEEeecC
Q 015937 292 ----------GK--QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKKLEQQRAALIFICVPVSPGHSRLIWAFPRN 359 (398)
Q Consensus 292 ----------~~--~~~~~~~f~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~r~ 359 (398)
+. .......+..|++...... +.+...+.-.++|++.++++++-.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~s~~lP~v~~v~~~-------------------p~~~~~~~~~~vPid~~~~~~~~~~~~~ 307 (394)
T 3gcf_A 247 GETVLSAELTGEEKKVAAQVSVWLPGVLKVDPF-------------------PDPTLIQYEFYVPISETQHEYFQVLQRK 307 (394)
T ss_dssp TEEEEECCCCSSCBCCCSEEEEETTTEEEEESC-------------------SSTTCEEEEEEEESSSSCEEEEEEEEEE
T ss_pred ccccccccccCcccccceeEEEEecCeeEeccC-------------------CCCCeEEEEEEeeccCCeEEEEEEEEEE
Confidence 10 1123456677887766521 2335566666799999999999777765
Q ss_pred cccchh------ccchHHHHHHhhhhHHHHHHHHHHHHhh
Q 015937 360 FQTWID------KVVPRWIFHIGQNLILDSDLYLLHVEVI 393 (398)
Q Consensus 360 f~~~~~------~~~~~~~~h~~~~~V~~ED~~ile~qqr 393 (398)
.....+ ++-.+|.. .-.+..++.|...-|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~ 346 (394)
T 3gcf_A 308 VEGPEDVKTFEVEFEERWRD-DALHGFNDDDVWAREAQQE 346 (394)
T ss_dssp CSSHHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhHH-HhhcccchhhHHHHHHHHH
Confidence 543321 11112221 2246778899988888773
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=3.5e-39 Score=330.83 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=151.8
Q ss_pred CCchhccccccccccCCcEEeeecCCC-CCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDL-DKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL-~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~ 150 (398)
.++++|++|++.+|.+.|++||++++| ++|++++++++|++|||+|+.+| +++||.|+|||||++|+.|..+..+.|+
T Consensus 41 td~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG-~v~A~~n~C~Hrga~L~~g~~g~~~~i~ 119 (457)
T 3gzx_A 41 ADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQ-SIKVFLNQCRHRGMRIVRSDGGNAKAFT 119 (457)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESCCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCC-eEEEEeCcCCCCCcCccCCCCCcCCEEE
Confidence 489999999999999999999999999 47899999999999999999888 9999999999999999998754345799
Q ss_pred ccCCCeEEcCCCccccCCCCCCCC-----CCC-CccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCC-CC
Q 015937 151 CVYHGWCFSGSGDCKFIPQAPPDG-----PPV-HTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPE-LD 223 (398)
Q Consensus 151 CpyHGw~Fd~~G~c~~iP~~~~~~-----~~~-~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~-~~ 223 (398)
||||||+||.+|+|+.+|...... ... +.+.+.+|++|+|++++|+||||+++++.++++......+.+.. ++
T Consensus 120 CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l~e~lg~~~~~ld~~~~ 199 (457)
T 3gzx_A 120 CTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLD 199 (457)
T ss_dssp CTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCHHHHTTTCHHHHHHHHS
T ss_pred cCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCChHHHHhhhHHHHHHHhc
Confidence 999999999999999999853211 112 34567889999999999999999998765543211111111111 12
Q ss_pred C--CCCeee--eeEEEEecChhhhhhhc-CCCCccc-cccccccc
Q 015937 224 D--PSFTKL--FGNRDIPYGYEVLLENL-MDPAHVP-YAHYGLMR 262 (398)
Q Consensus 224 ~--~~~~~~--~~~~~~~~nwk~~~EN~-lD~~H~~-~vH~~~~~ 262 (398)
. .++... ...+.++||||+++||+ +|+||++ ++|.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 200 RTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp SSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred cCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 1 234333 34678999999999999 8999999 99998765
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=5e-39 Score=330.86 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=147.9
Q ss_pred CCchhccccccccccCCcEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEE
Q 015937 72 RELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQ 150 (398)
Q Consensus 72 ~~~~~~~~E~~~~~~~~W~~v~~~~dL~-~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~ 150 (398)
.++++|++|++.+|.+.|++||++++|+ +|+++.+.++|++|+|+|+.+| +++||.|+|||||++|+.|..+..+.|+
T Consensus 39 ~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G-~v~a~~n~CpHrga~L~~g~~g~~~~i~ 117 (460)
T 1uli_A 39 TDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNG-EIRVFLNQCRHRGMRICRADGGNAKSFT 117 (460)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTS-CEEEEESCCTTTCCCSCCSSEEECSCEE
T ss_pred CCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCC-CEEEEeeeCCCCCCCCccccCCCCCEEE
Confidence 4899999999999999999999999995 6888999999999999999888 9999999999999999998875445799
Q ss_pred ccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccccccccCCCCCCCC-CCC--CCC
Q 015937 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPE-LDD--PSF 227 (398)
Q Consensus 151 CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~~~~~~~~~p~~p~-~~~--~~~ 227 (398)
||||||+||.+|+|+.+|......+ .+.+.+.+|++|+|++++|+|||++++++.+++.......+.+.. ++. ..+
T Consensus 118 CpyHgw~fd~~G~~~~~P~~~~~~~-~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~~~~~~~~~ 196 (460)
T 1uli_A 118 CSYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLDRTEAGT 196 (460)
T ss_dssp CTTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTTHHHHHHHHHCSSTTCE
T ss_pred cCCCCCEEeCCCCEeeCCccccccC-CCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcchHHHHHHHhhcCCCce
Confidence 9999999999999999997532111 234566889999999999999999987754432211000001111 111 223
Q ss_pred ee--eeeEEEEecChhhhhhhc-CCCCcc-cccccccc
Q 015937 228 TK--LFGNRDIPYGYEVLLENL-MDPAHV-PYAHYGLM 261 (398)
Q Consensus 228 ~~--~~~~~~~~~nwk~~~EN~-lD~~H~-~~vH~~~~ 261 (398)
.. ....++++||||+++||+ +|+||+ .++|...+
T Consensus 197 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 197 EAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp EECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred EEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 32 133578999999999999 799999 69999665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=1.3e-26 Score=190.99 Aligned_cols=101 Identities=18% Similarity=0.297 Sum_probs=92.1
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC-CCccc
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~-~G~c~ 165 (398)
..|++|+.++||++|+++.++++|++|+|+| .+| +++|++|+|||||++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g-~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEG-EIYATDNLCTHGSARMSDGYLEG-REIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETT-EEEEEESBCSSSSCBGGGSEEET-TEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECC-EEEEECCcCCCCCCCCCCCeEeC-CEEECCCCCCEEeCCCCCEe
Confidence 4699999999998899999999999999999 577 99999999999999999998865 58999999999996 99999
Q ss_pred cCCCCCCCCCCCCccccccceeeccEEecCeEEEccC
Q 015937 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (398)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~ 202 (398)
.+|.. .+|++|+|++++|.|||+++
T Consensus 79 ~~P~~------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC------------CCCCEEeEEEECCEEEEEcC
Confidence 98842 36999999999999999874
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=1.8e-26 Score=192.82 Aligned_cols=104 Identities=22% Similarity=0.356 Sum_probs=93.9
Q ss_pred CcEEeeecCCCCCCCcEEEEE-CCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC-CCccc
Q 015937 88 QWYPLMPVCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (398)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l-~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~-~G~c~ 165 (398)
.|++|+.++||++|+.+.+++ +|++|+|+|+.+| +++|++|+|||||++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g-~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEH-GVKAYQAMCPHQEILLSEGSYEG-GVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTT-EEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCC-eEEEEeCcCCCCCcCCCCceEcC-CEEEcCCCCCEEeCCCccCC
Confidence 599999999998899999999 9999999999787 99999999999999999998875 58999999999997 59999
Q ss_pred cCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCc
Q 015937 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPR 206 (398)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~ 206 (398)
. |. ..+|++|+|++++|+|||++++++.
T Consensus 79 ~-p~------------~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 79 N-PD------------DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp S-SS------------SCBCCEECEEEETTEEEECCTTCCC
T ss_pred C-CC------------cCCcCEEEEEEECCEEEEeccCcCC
Confidence 8 52 2469999999999999999987654
No 16
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=2.5e-26 Score=192.37 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=94.1
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC-ccCCCceEEccCCCeEEcC-CCcc
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG-RIDQWGRLQCVYHGWCFSG-SGDC 164 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G-~~~~~~~l~CpyHGw~Fd~-~G~c 164 (398)
..|++|+.++||++|+.+.+++.|++|+|+|. +| +++|++|+|||||++|+.| .+++ +.|+||||||+||. ||+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g-~~~A~~n~CpH~g~~L~~g~~~~~-~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DG-ELFATQDRCTHGDWSLSDGGYLEG-DVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TT-EEEEEESBCTTSSCBSSTTCCEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CC-EEEEEECCCCCCCcCCCCCCEEcC-CEEECCCCCCEEeCCCCcE
Confidence 46999999999988999999999999999999 77 9999999999999999999 7764 58999999999997 8999
Q ss_pred ccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCC
Q 015937 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (398)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~ 205 (398)
+.+|.. .+|++|+|++++|+|||+++++.
T Consensus 81 ~~~P~~------------~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 81 KSPPPC------------EALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp EESSCC------------SCCCBCCEEEETTEEEECTTCCB
T ss_pred eCCCCC------------CCccEEEEEEECCEEEEEecccc
Confidence 998842 36999999999999999987543
No 17
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=1.2e-26 Score=193.05 Aligned_cols=102 Identities=24% Similarity=0.295 Sum_probs=92.4
Q ss_pred CcEEeeecCCCCCCCcEEEEECCEE-EEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC-CCccc
Q 015937 88 QWYPLMPVCDLDKRVPHAKKVLGLD-VVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (398)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~-ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~-~G~c~ 165 (398)
.|++|+.++||++|+++.++++|++ |+|+|+ +| +++|++|+|||+|++|+.|.+++ +.|+||||||+||. +|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g-~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DG-EVFVTDNLCTHGNAMLTDGYQDG-TIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TT-EEEEEESBCSSSSCBGGGSEEET-TEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CC-EEEEEeCcCCCCCCCCCCCEEeC-CEEEcCCCCCEEeCCCcCEe
Confidence 5999999999988999999999999 999998 77 99999999999999999998875 58999999999995 99999
Q ss_pred cCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCC
Q 015937 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (398)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~ 204 (398)
.+|.. .+|++|+|++++|.|||+++++
T Consensus 80 ~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC------------CCccEEeEEEECCEEEEeCCCC
Confidence 98842 3699999999999999998754
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=1.4e-26 Score=194.86 Aligned_cols=104 Identities=21% Similarity=0.383 Sum_probs=93.9
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCE-EEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC-CCcc
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGL-DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDC 164 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~-~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~-~G~c 164 (398)
+.|++|+.++||++|+++.++++|+ +|+|+|. +| +++|++|+|||||++|+.|.+++ +.|+||||||+||. +|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g-~~~A~~n~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GD-QFYATEDTCTHGIASLSEGTLDG-DVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TT-EEEEEESBCTTSSCBGGGSEEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CC-EEEEEeCCCCCCCCCCcCCEEeC-CEEECCCCCCEEcCCCcCE
Confidence 5799999999998899999999999 9999998 77 99999999999999999998875 58999999999995 9999
Q ss_pred ccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCC
Q 015937 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (398)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~ 205 (398)
+.+|.. .+|++|+|++++|.|||++++.+
T Consensus 80 ~~~P~~------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 80 ASSPCT------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EETTCC------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred eCCCCc------------CCCCEEEEEEECCEEEEecCCcc
Confidence 998842 36999999999999999987654
No 19
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=3.6e-26 Score=196.56 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=95.7
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCccCC--C-ceEEccCCCeEEcC-C
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQ--W-GRLQCVYHGWCFSG-S 161 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga-~Ls~G~~~~--~-~~l~CpyHGw~Fd~-~ 161 (398)
..|+.|+.++||++|+.+.++++|++|+|+|+.+||+++|++|+|||||+ +|+.|.+++ + ..|+||||||+||. |
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 36999999999988999999999999999998554389999999999999 599998753 1 37999999999996 9
Q ss_pred CccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccc
Q 015937 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYK 208 (398)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~ 208 (398)
|+|+.+|. .+|++|+|++++|.|||++++++.+.
T Consensus 82 G~~~~~P~-------------~~L~~~~v~v~~g~V~V~~~~~~~~~ 115 (130)
T 2jza_A 82 GFCLEDGA-------------YSVAAYDTQVTNGNVQISIADSDVAV 115 (130)
T ss_dssp CCBSSCCS-------------SCCBCCCEEESSSEEEEECCCCCCCC
T ss_pred cCCCCCCc-------------CcceEEEEEEECCEEEEEeCCCCCCc
Confidence 99999884 36999999999999999998766544
No 20
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=1.8e-26 Score=191.18 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=93.1
Q ss_pred CcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEc-CCCcccc
Q 015937 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKF 166 (398)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd-~~G~c~~ 166 (398)
+|++|+.++||++|+.+.++++|++|+|+|. +| +++|++|+|||+|++|+.|.+++ +.|+||||||+|| .+|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g-~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV-DG-EFFAVQDTCTHGDWALSDGYLDG-DIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE-TT-EEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CC-EEEEEeCcCCCCCCCCcCcEEeC-CEEECCCCCCEEeCCCCCEeC
Confidence 5999999999998999999999999999995 66 99999999999999999999875 5899999999999 6999999
Q ss_pred CCCCCCCCCCCCccccccceeeccEEecCeEEEccCCC
Q 015937 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (398)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~ 204 (398)
+|.. .+|++|++++++|.|||++++.
T Consensus 78 ~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 78 LPAC------------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp TTCC------------SCCCEECEEEETTEEEECGGGC
T ss_pred CCCC------------CCccEEEEEEECCEEEEEcccc
Confidence 8842 4699999999999999998653
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=3.4e-26 Score=193.72 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=94.4
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCccCCC---ceEEccCCCeEEcC-C
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQW---GRLQCVYHGWCFSG-S 161 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga-~Ls~G~~~~~---~~l~CpyHGw~Fd~-~ 161 (398)
..|++|+.++||++|+++.++++|++|+|+|+.+| +++|++|+|||||+ +|+.|.++++ ..|+||||||+||. +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G-~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDS-GVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTT-EEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCC-eEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 57999999999988999999999999999999787 99999999999999 8999987632 27999999999996 9
Q ss_pred CccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCC
Q 015937 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (398)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~ 204 (398)
|+|+.+|. .+|++|+|++++|.|||++++.
T Consensus 83 G~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA-------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT-------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC-------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99999874 3699999999999999998765
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=4.2e-26 Score=191.19 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=91.6
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCe-EEEEecCCCCCCC-CCCCCccCC-Cc--eEEccCCCeEEcC-
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENE-WRVFADACPHRLA-PLSEGRIDQ-WG--RLQCVYHGWCFSG- 160 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~-v~A~~n~CpHRga-~Ls~G~~~~-~~--~l~CpyHGw~Fd~- 160 (398)
..|+.|+.++||++|+++.++++|++|+|||..+| + ++|++|+|||||+ +|+.|.+++ ++ .|+||||||+||.
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g-~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYHS-DQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSSS-SCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECCC-CEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 45999999999998999999999999999998665 5 9999999999999 799998862 12 7999999999997
Q ss_pred CCccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccC
Q 015937 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (398)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~ 202 (398)
+|+|+.+|. .+|++|+|++++|.|||+++
T Consensus 84 tG~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 84 DGLCMEDEQ-------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTEETTTTT-------------TCCCEEEEEEETTEEEEECC
T ss_pred CccCCCCCc-------------ccccEEeEEEECCEEEEEcC
Confidence 999999873 36999999999999999875
No 23
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=9.7e-26 Score=191.49 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=92.4
Q ss_pred CcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC--ccCCCceEEccCCCeEEc-CCCcc
Q 015937 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCVYHGWCFS-GSGDC 164 (398)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G--~~~~~~~l~CpyHGw~Fd-~~G~c 164 (398)
.|++|+.++||++|+++.++++|++|+|+|. +| +++|++|+|||+|++|+.| .+++ +.|+||||||+|| .+|+|
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g-~~~A~~n~CpH~g~~L~~G~~~~~~-~~i~CP~Hg~~Fdl~tG~~ 86 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GD-SVYAISNLCSHAEAYLDMGVFHAES-LEIECPLHVGRFDVRTGAP 86 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TT-EEEEEESBCSSSSCBGGGSEEETTT-TEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CC-EEEEEeCcCCCCCCCCCCCceeecC-CEEEcCCCCCEEcCCCccE
Confidence 5999999999988999999999999999997 66 9999999999999999999 7765 5899999999999 69999
Q ss_pred ccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCCCC
Q 015937 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (398)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~ 205 (398)
+.+|.. .+|++|+|++++|.|||+++...
T Consensus 87 ~~~P~~------------~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 87 TALPCV------------LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp EETTCC------------SCCCBCCEEEETTEEEECCC---
T ss_pred eCCCCc------------CCcceEEEEEECCEEEEEECccc
Confidence 998852 36999999999999999987654
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=1.4e-26 Score=205.40 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=97.4
Q ss_pred ccCCcEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCC---CceEEccCCCeEEcC-
Q 015937 85 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQ---WGRLQCVYHGWCFSG- 160 (398)
Q Consensus 85 ~~~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~---~~~l~CpyHGw~Fd~- 160 (398)
..+.|++||.++||++|+++.++++|++|+|+|. +| +++|+.|+|||||++|+.|.+++ .+.|+||||||+||.
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~G-~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH-KG-EYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE-TT-EEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE-CC-EEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 3468999999999977899999999999999995 77 99999999999999999998763 247999999999997
Q ss_pred CCcccc--C-CCCCCCCCCCCccccccceeeccEEecCeEEEccCCCCccc
Q 015937 161 SGDCKF--I-PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYK 208 (398)
Q Consensus 161 ~G~c~~--i-P~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~~~~~~ 208 (398)
+|+|+. + |......+ .+.+.+.+|++|+|++++|+|||++++++.++
T Consensus 91 tG~~~~~~i~P~~~~~~~-~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~~l 140 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAKP-KWCSKGVKQRIHTVKVDNGNIYVTLSKEPFKC 140 (157)
T ss_dssp TCEEEEEECCCC-----C-EEEEEEECSCEEEEEEETTEEEEECCCCSSCC
T ss_pred CcCEEEeccCCCcccccc-ccccccCcceEEEEEEECCEEEEEeCCCCcCc
Confidence 999996 3 64221100 01123468999999999999999998765443
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=4.8e-26 Score=192.91 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCcEEeeecCCCCCCCcEEEEEC-CEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccCC----CceEEccCCCeEEc-C
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVL-GLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQ----WGRLQCVYHGWCFS-G 160 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~-g~~ivv~R~~~Gg~v~A~~n~CpHRga~Ls~G~~~~----~~~l~CpyHGw~Fd-~ 160 (398)
++|++||.++||++|..+.+.+. |++|+|||..+| +++|++|+|||+|++|+.|.+.+ .+.|+||||||+|| .
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG-~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDG-SVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTS-CEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCC-eEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 46999999999999999999885 799999999888 99999999999999998765432 23699999999999 6
Q ss_pred CCccccCCCCCCCCCCCCccccccceeeccEEe-cCeEEEccC
Q 015937 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWFWPN 202 (398)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~-~G~V~v~~~ 202 (398)
||+|+..|. .+|++|||+++ +|.|||.+.
T Consensus 87 tG~~~~~p~-------------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-------------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-------------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-------------CccceEEEEEEeCCEEEEecC
Confidence 999998773 36899999865 899999864
No 26
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.83 E-value=2.1e-21 Score=168.64 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=87.0
Q ss_pred CCcEEeee-cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcCCC
Q 015937 87 SQWYPLMP-VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162 (398)
Q Consensus 87 ~~W~~v~~-~~dL~~g~~~~~~-l~g~~ivv~R~~~Gg~v--~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~~G 162 (398)
..|..++. .++|++|..+.+. +.|.+++++|+.+| ++ +|++|+|||||++|+.|.. ++.|+||||||+||.+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G-~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~tG 96 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDK-TLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQG 96 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTS-SBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETTC
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCC-cEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCCC
Confidence 46778887 8999878777665 57888888888887 99 9999999999999998873 35799999999999999
Q ss_pred ccccCCCCCCCCCCCCccccccceeeccEEecCeEEEccCC
Q 015937 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (398)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~~ 203 (398)
+|+.+|.. .+|+.|+|++++|.|||.+..
T Consensus 97 ~~~~~P~~------------~~L~~~~v~v~~g~V~V~~~~ 125 (139)
T 1rfs_A 97 RVVRGPAP------------LSLALAHCDVDDGKVVFVPWT 125 (139)
T ss_dssp CEEESSCC------------SCCCEEEEEEETTEEEEEECC
T ss_pred CCccCCCC------------CCCCEEEEEEECCEEEEEeCC
Confidence 99998842 369999999999999998643
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.83 E-value=1e-20 Score=162.29 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeC--------------------------CCCeEEEEecCCCCCCCCCCC
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR--------------------------NENEWRVFADACPHRLAPLSE 140 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~--------------------------~Gg~v~A~~n~CpHRga~Ls~ 140 (398)
..|..+ .+++|++|+.+.+.+.|++++|+|.. +| +++|+.|+|||+|++|+.
T Consensus 4 ~~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g-~~~a~~~~C~H~g~~l~~ 81 (129)
T 1rie_A 4 MSKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKP-EWVILIGVCTHLGCVPIA 81 (129)
T ss_dssp CSSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSST-TEEEEECCCTTTSCCCEE
T ss_pred cCceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCC-eEEEEECccCCCCeeccc
Confidence 357777 88999999999999999999999963 66 999999999999999999
Q ss_pred CccCCCceEEccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEE-ecCeEEE
Q 015937 141 GRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (398)
Q Consensus 141 G~~~~~~~l~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e-~~G~V~v 199 (398)
|.+++ +.|+||||||+||.+|+|+..|.. ..|..|++++ .+|.|||
T Consensus 82 g~~~~-~~i~CP~Hg~~fd~~G~~~~~P~~------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 82 NAGDF-GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TCTTT-EEEEETTTTEEEETTCCEEESSCC------------SCCCCCCEEESSSSEEEE
T ss_pred ccCCC-CEEEcCCCCCEEcCCCCEeeCCCC------------CCCCceeEEEEeCCEEEE
Confidence 88764 579999999999999999998742 3589999999 8999987
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.81 E-value=4.8e-20 Score=158.95 Aligned_cols=98 Identities=13% Similarity=0.016 Sum_probs=85.5
Q ss_pred CcEEeeecCCCCCCCcEEEEEC--CEEEEEEEeC---------CCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCe
Q 015937 88 QWYPLMPVCDLDKRVPHAKKVL--GLDVVVWWDR---------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGW 156 (398)
Q Consensus 88 ~W~~v~~~~dL~~g~~~~~~l~--g~~ivv~R~~---------~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw 156 (398)
.|+.||.++||++|+++.+++. |++++|+|.. +| +++|++|+|||+|++|+.+ .. ++.|+||||||
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g-~~~A~~n~CpH~g~~L~~~-~~-~~~i~CP~Hg~ 83 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDD-DIVAYSVLCTHMGCPTSYD-SS-SKTFSCPCHFT 83 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTT-CEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCC
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCC-EEEEEeCcCCCCCCCCCcc-cC-CCEEECCCCCC
Confidence 5899999999988999999986 8999999985 66 9999999999999999973 33 35799999999
Q ss_pred EEcC--CCccccCCCCCCCCCCCCccccccceeeccEEe--cCeEEEc
Q 015937 157 CFSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFW 200 (398)
Q Consensus 157 ~Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~--~G~V~v~ 200 (398)
+||. +|+|+..|.. ..|+.|++++. +|.||+.
T Consensus 84 ~Fd~~~~G~~~~gP~~------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 84 EFDAEKAGQMICGEAT------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEEGGGTTEEEESSCS------------SCCCEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCEEcCCCC------------CCCCEEEEEEECCCCEEEEE
Confidence 9996 8999998842 35899999998 6789984
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=7.4e-21 Score=163.79 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=81.4
Q ss_pred CCcEEee-ecCCCCCCCcEEEE-ECCEEEEEEEeCCCCe--EEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcCCC
Q 015937 87 SQWYPLM-PVCDLDKRVPHAKK-VLGLDVVVWWDRNENE--WRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162 (398)
Q Consensus 87 ~~W~~v~-~~~dL~~g~~~~~~-l~g~~ivv~R~~~Gg~--v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~~G 162 (398)
-.+..+. ..+++++|+...+. +.|.+++++|+.+| + ++|++|+|||||++|+.|. + ++.|+||||||+||.+|
T Consensus 14 g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G-~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG 90 (133)
T 3azc_A 14 GNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDH-QIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTG 90 (133)
Confidence 3444443 45577777777666 44555666666677 8 9999999999999999887 3 35799999999999999
Q ss_pred ccccCCCCCCCCCCCCccccccceeeccEE-ecCeEEEccCCC
Q 015937 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWFWPNIA 204 (398)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e-~~G~V~v~~~~~ 204 (398)
+|+.+|.. .+|++|+|++ ++|.|||.++.+
T Consensus 91 ~~~~~P~~------------~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 91 KVVRGPAP------------LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 99998842 3699999999 999999997654
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.77 E-value=2.8e-19 Score=160.85 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=84.1
Q ss_pred cEEeeecCCCCCCCcEEEEECC--EEEEEEEe---------CCCCeEEEEecCCCCCCCCCCCCccCCCceEEccCCCeE
Q 015937 89 WYPLMPVCDLDKRVPHAKKVLG--LDVVVWWD---------RNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWC 157 (398)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g--~~ivv~R~---------~~Gg~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~ 157 (398)
+..||.++||++|+.+.+++.| .+++|+|. .+| +++|++|+|||+|++|+.| .+ ++.|+||||||+
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G-~v~A~~n~CpH~G~~L~~g-~~-~~~i~CP~Hg~~ 127 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDG-DIVGFSTICPHKGFPLSYS-AD-NKTFNCPGHFSV 127 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTT-CEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCCE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCC-EEEEEeCCCCCCCCCCccC-CC-CCEEEcCCCCCE
Confidence 5579999999889999999975 58999997 466 9999999999999999988 44 458999999999
Q ss_pred EcC--CCccccCCCCCCCCCCCCccccccceeeccEE-ecCeEEEc
Q 015937 158 FSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWFW 200 (398)
Q Consensus 158 Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e-~~G~V~v~ 200 (398)
||. +|+|+..|.. ..|+.|++++ .+|.||+-
T Consensus 128 Fd~~~tG~~~~gPa~------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EEGGGTTEEEECSCS------------SCCCBEEEEECTTSEEEEE
T ss_pred ECCCCCceEecCCCC------------CCcCEEEEEEEcCCEEEEE
Confidence 995 5999998852 3599999999 69999963
No 31
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.71 E-value=3.2e-17 Score=149.13 Aligned_cols=96 Identities=19% Similarity=0.276 Sum_probs=81.1
Q ss_pred cEEeeecCCCCCCCcEEEEECCEEEEEEEe----------------------------------------CCCCeEEEEe
Q 015937 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWD----------------------------------------RNENEWRVFA 128 (398)
Q Consensus 89 W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~----------------------------------------~~Gg~v~A~~ 128 (398)
|..+ .+++|++|+.+.+++.|++|+|+|. .+| +++|+.
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g-~~~a~~ 126 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAG-EWLVMW 126 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTC-CEEEEE
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCC-eEEEEe
Confidence 5554 7899999999999999999999993 156 999999
Q ss_pred cCCCCCCCCCCCC-ccCCCceEEccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEe-cCeEEE
Q 015937 129 DACPHRLAPLSEG-RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWF 199 (398)
Q Consensus 129 n~CpHRga~Ls~G-~~~~~~~l~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~-~G~V~v 199 (398)
|+|||+|++|+.| ... .+.|.||||||+||.+|+|+..|.. ..|..|++++. +|.|+|
T Consensus 127 ~~C~H~G~~l~~~~~g~-~~~~~CP~Hg~~Fd~~G~~~~gPa~------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 127 GVCTHLGCSPIGGVSGD-FGGWFCPCHGSHYDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCCTTTSCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEEEETTEEEE
T ss_pred CccCCCCeECccCcCCC-cCEEEeCCCCCEECCCCeEeCCCCC------------CCCceEEEEEEeCCEEEE
Confidence 9999999999974 322 2579999999999999999998742 35899999986 689987
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.71 E-value=2.6e-17 Score=150.55 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=83.3
Q ss_pred eeecCCCCCCCcEEEEECCEEEEEEEeC--------------------------CCCeEEEEecCCCCCCCCCCCCccCC
Q 015937 92 LMPVCDLDKRVPHAKKVLGLDVVVWWDR--------------------------NENEWRVFADACPHRLAPLSEGRIDQ 145 (398)
Q Consensus 92 v~~~~dL~~g~~~~~~l~g~~ivv~R~~--------------------------~Gg~v~A~~n~CpHRga~Ls~G~~~~ 145 (398)
.+.+++|++|+.+.+++.|++++|+|.. +| +++|+.|+|||+|++|+.|..+.
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~g-e~~a~~~~CtH~G~~l~~~~~~~ 153 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKP-EWVILIGVCTHLGCVPIANAGDF 153 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSST-TEEEEECCCTTTSCCCEETCSTT
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCC-eEEEEECccCCCCeeccccCCCC
Confidence 5789999999999999999999999862 66 99999999999999999887764
Q ss_pred CceEEccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEE-ecCeEEE
Q 015937 146 WGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (398)
Q Consensus 146 ~~~l~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e-~~G~V~v 199 (398)
+.|.||||||+||.+|+++.+|.. ..|..|++++ .+|.|+|
T Consensus 154 -~~~~CP~HGs~FD~~G~v~~gPa~------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 -GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp -SSEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTTEEEE
T ss_pred -CEEEeCCCCCEECCCCCCccCCCC------------CCCcceeEEEEECCEEEE
Confidence 469999999999999999998842 3589999998 7999987
No 33
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.71 E-value=4e-17 Score=148.18 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=81.9
Q ss_pred CCcEEeeecCCCCCCCcEEEEECCEEEEEEEeC--------------------------CCCeEEEEecCCCCCCCC-CC
Q 015937 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR--------------------------NENEWRVFADACPHRLAP-LS 139 (398)
Q Consensus 87 ~~W~~v~~~~dL~~g~~~~~~l~g~~ivv~R~~--------------------------~Gg~v~A~~n~CpHRga~-Ls 139 (398)
..|..| .+++|++|+.+.+++.|++++|+|.. +| +++|+.|+|||+|+. +.
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g-~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDP-QWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSST-TEEEEECCCTTTSCCCEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCC-eEEEEecccCCCCceecc
Confidence 369999 69999999999999999999999974 46 999999999999995 55
Q ss_pred CCccCCCceEEccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEEecCeEEE
Q 015937 140 EGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (398)
Q Consensus 140 ~G~~~~~~~l~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v 199 (398)
.+. + .+.|.||||||+||.+|+|+..|.. ..|..+++++.+|.|||
T Consensus 139 ~~~-~-~~~~~CPcHGs~FD~~G~v~~gPa~------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAG-D-FGGWFCPCHGSHYDISGRIRKGPAP------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EET-T-TTEEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTEEEE
T ss_pred CCC-C-CCEEEcCCCCCEECCCCCEecCCCC------------CCcceEEEEEECCEEEE
Confidence 432 2 3579999999999999999998842 24777788889999987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.71 E-value=3e-17 Score=142.70 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=80.4
Q ss_pred eecCCCCCCCcEEEEECCEEEEEEEeC----------------------------------------CCCeEEEEecCCC
Q 015937 93 MPVCDLDKRVPHAKKVLGLDVVVWWDR----------------------------------------NENEWRVFADACP 132 (398)
Q Consensus 93 ~~~~dL~~g~~~~~~l~g~~ivv~R~~----------------------------------------~Gg~v~A~~n~Cp 132 (398)
..+++|++|+.++++..|+++.|.|.. +| +++|+.|+||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g-~~~a~~~~C~ 84 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAG-EWLVMWGVCT 84 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTS-CEEEEECCCT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCC-cEEEEeCcCC
Confidence 357889999999999999999998851 55 9999999999
Q ss_pred CCCCCCCC-CccCCCceEEccCCCeEEcCCCccccCCCCCCCCCCCCccccccceeeccEE-ecCeEEE
Q 015937 133 HRLAPLSE-GRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (398)
Q Consensus 133 HRga~Ls~-G~~~~~~~l~CpyHGw~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e-~~G~V~v 199 (398)
|+|++|+. +...+ +.|.||||||+||.+|+|+.+|.. ..|..|++++ .+|.|+|
T Consensus 85 H~G~~l~~~~~~~~-~~~~CP~Hgs~Fd~~G~~~~gPa~------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 85 HLGCVPIGGVSGDF-GGWFCPCHGSHWDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TTCCCCEEEEETTT-TEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEESSSSEEEE
T ss_pred CCCeEccccCccCC-CEEEcCCCCCEECCCCCCccCCCC------------CCCCceeEEEEECCEEEE
Confidence 99999998 65543 579999999999999999998742 3589999999 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.68 E-value=4.9e-17 Score=144.98 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred eEEEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcC-CCc-cccCCCCCCCCCCCCccccccceeeccEEecCeEEEc
Q 015937 123 EWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGD-CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFW 200 (398)
Q Consensus 123 ~v~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~-~G~-c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~~G~V~v~ 200 (398)
.++||.|+|||+|++|+.|..++ +.|+||||||+||. +|. |+.+|.. .+|..|++++.+|.|||+
T Consensus 79 gv~A~~~~CpH~G~~L~~g~~~~-~~i~CP~Hgs~Fd~~tG~~~~~gPa~------------~~L~~~~v~v~~g~V~v~ 145 (165)
T 1nyk_A 79 GVVAYSAVCTHLGCIVSQWVADE-EAALCPCHGGVYDLRHGAQVIAGPPP------------RPVPQLPVRVEDGVLVAA 145 (165)
T ss_dssp TEEEEECBCTTTCCBCCEEEGGG-TEEECTTTCCEEEGGGTTEEEESSCS------------SCCCEECEEEETTEEEEC
T ss_pred CEEEEEeecCCCCeEcccccCCC-CEEECCCCCCEEcCCCCCeeecCCCC------------CCCcEEEEEEECCEEEEE
Confidence 39999999999999999888765 57999999999996 586 9998742 369999999999999999
Q ss_pred cCCC
Q 015937 201 PNIA 204 (398)
Q Consensus 201 ~~~~ 204 (398)
++..
T Consensus 146 ~~~~ 149 (165)
T 1nyk_A 146 GEFL 149 (165)
T ss_dssp SSCS
T ss_pred ecCc
Confidence 8754
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.67 E-value=9.3e-18 Score=151.68 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=79.8
Q ss_pred cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCccCCCceEEccCCCeEEcCCCccccCCCCC
Q 015937 95 VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAP 171 (398)
Q Consensus 95 ~~dL~~g~~~~~~-l~g~~ivv~R~~~Gg~v--~A~~n~CpHRga~Ls~G~~~~~~~l~CpyHGw~Fd~~G~c~~iP~~~ 171 (398)
.++|++|+...+. +.|++++++|+.+| ++ +|+.|+|||+|++|+.|.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g-~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKE-AIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTC-CBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCC-cEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 4678888887776 77889999998887 87 9999999999999998873 3469999999999999999998842
Q ss_pred CCCCCCCccccccceeeccEEecCeEEEccC
Q 015937 172 PDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (398)
Q Consensus 172 ~~~~~~~~~~~~~l~~y~v~e~~G~V~v~~~ 202 (398)
..|..|++++.+|.|||.+-
T Consensus 146 -----------~~L~~~~v~v~~g~v~v~~~ 165 (179)
T 1vf5_D 146 -----------LSLALCHATVQDDNIVLTPW 165 (179)
T ss_dssp -----------SCCBCCCCCCSSSSCCCCCC
T ss_pred -----------CCCCeEEEEEECCEEEEEee
Confidence 36999999999999999763
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.53 E-value=1.5e-15 Score=139.63 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=70.0
Q ss_pred EEEEECCEEEEEEEeC------------CCCeEEEEecCCCCCCCCCCCCcc----------CCCceEEccCCCeEEcCC
Q 015937 104 HAKKVLGLDVVVWWDR------------NENEWRVFADACPHRLAPLSEGRI----------DQWGRLQCVYHGWCFSGS 161 (398)
Q Consensus 104 ~~~~l~g~~ivv~R~~------------~Gg~v~A~~n~CpHRga~Ls~G~~----------~~~~~l~CpyHGw~Fd~~ 161 (398)
+.+++.+.+++++|+. +| +++|+.|+|||+|++|+.|.+ ...+.|+||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g-~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~ 134 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNG-TIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALK 134 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTT-CEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCC-EEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCC
Confidence 4567888888888875 66 999999999999999998864 224579999999999975
Q ss_pred --CccccCCCCCCCCCCCCccccccceeeccEEe--cCeEEEccC
Q 015937 162 --GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFWPN 202 (398)
Q Consensus 162 --G~c~~iP~~~~~~~~~~~~~~~~l~~y~v~e~--~G~V~v~~~ 202 (398)
|+|+..|.. ..|..|++++. +|.||+...
T Consensus 135 tGG~v~~gPa~------------~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 135 DGGVVVSGPAP------------RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp GTSEEEESSCC------------SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCCeEecCCCC------------CCCCeEeeEEEecCCEEEEEeC
Confidence 699998742 25888888877 999999753
Done!