Query 015939
Match_columns 398
No_of_seqs 243 out of 2353
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 3.3E-27 7.3E-32 256.8 31.2 285 84-381 12-312 (2102)
2 KOG4224 Armadillo repeat prote 99.9 1.8E-26 3.8E-31 208.7 20.6 274 88-381 129-405 (550)
3 PLN03200 cellulose synthase-in 99.9 1.2E-25 2.6E-30 244.9 30.6 278 86-381 447-764 (2102)
4 KOG0166 Karyopherin (importin) 99.9 2.7E-25 5.8E-30 213.7 25.2 283 84-381 108-393 (514)
5 KOG0166 Karyopherin (importin) 99.9 3.3E-24 7.1E-29 206.3 23.2 284 84-381 151-436 (514)
6 KOG4224 Armadillo repeat prote 99.9 1E-24 2.2E-29 197.4 18.0 274 88-381 170-446 (550)
7 COG5064 SRP1 Karyopherin (impo 99.9 2.5E-23 5.5E-28 186.9 17.1 285 84-381 156-443 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 4.5E-22 9.7E-27 178.9 18.2 284 84-387 113-403 (526)
9 PF04564 U-box: U-box domain; 99.9 2.1E-22 4.5E-27 146.9 5.1 71 10-80 1-71 (73)
10 PF05804 KAP: Kinesin-associat 99.8 5.9E-18 1.3E-22 171.7 23.4 216 147-381 263-479 (708)
11 KOG4199 Uncharacterized conser 99.8 4.6E-17 1E-21 146.6 26.1 210 167-381 178-403 (461)
12 KOG4199 Uncharacterized conser 99.8 9.3E-17 2E-21 144.6 26.7 285 86-380 146-443 (461)
13 PF05804 KAP: Kinesin-associat 99.8 2.2E-16 4.7E-21 160.3 26.5 260 86-363 291-588 (708)
14 smart00504 Ubox Modified RING 99.7 1.6E-18 3.5E-23 123.4 5.2 63 13-76 1-63 (63)
15 KOG1048 Neural adherens juncti 99.7 6.3E-15 1.4E-19 146.7 19.1 284 86-381 234-595 (717)
16 KOG2122 Beta-catenin-binding p 99.6 9.4E-15 2E-19 151.4 19.0 268 106-383 317-603 (2195)
17 PF04826 Arm_2: Armadillo-like 99.6 4.3E-14 9.4E-19 127.9 18.9 196 176-381 9-205 (254)
18 PF04826 Arm_2: Armadillo-like 99.6 5.6E-13 1.2E-17 120.7 21.3 197 126-338 9-207 (254)
19 KOG1048 Neural adherens juncti 99.5 2.4E-13 5.3E-18 135.5 14.4 197 132-337 235-453 (717)
20 PF15227 zf-C3HC4_4: zinc fing 99.5 1.6E-14 3.4E-19 92.7 3.3 39 16-54 1-42 (42)
21 PF10508 Proteasom_PSMB: Prote 99.5 5.8E-11 1.3E-15 119.1 27.8 284 86-383 78-422 (503)
22 cd00020 ARM Armadillo/beta-cat 99.3 2.1E-11 4.6E-16 98.0 12.5 115 216-335 3-119 (120)
23 KOG4500 Rho/Rac GTPase guanine 99.3 3.9E-10 8.5E-15 105.3 22.2 259 114-381 250-519 (604)
24 PLN03208 E3 ubiquitin-protein 99.3 8.9E-13 1.9E-17 111.6 4.3 62 8-69 13-89 (193)
25 cd00020 ARM Armadillo/beta-cat 99.3 3.5E-11 7.6E-16 96.7 12.5 116 175-294 3-120 (120)
26 TIGR00599 rad18 DNA repair pro 99.3 2.5E-12 5.3E-17 122.1 5.9 71 7-78 20-90 (397)
27 PF10508 Proteasom_PSMB: Prote 99.3 9.1E-10 2E-14 110.5 24.7 250 87-363 5-255 (503)
28 KOG2122 Beta-catenin-binding p 99.3 6E-11 1.3E-15 123.8 15.0 227 103-338 367-603 (2195)
29 KOG4500 Rho/Rac GTPase guanine 99.2 1.4E-09 3E-14 101.8 19.4 283 87-381 89-390 (604)
30 PF03224 V-ATPase_H_N: V-ATPas 99.2 3.6E-09 7.7E-14 100.1 22.3 259 108-374 31-307 (312)
31 KOG0946 ER-Golgi vesicle-tethe 99.2 9.5E-09 2.1E-13 102.5 24.6 285 84-377 21-342 (970)
32 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.9E-11 4.1E-16 77.5 2.8 38 16-54 1-39 (39)
33 KOG1222 Kinesin associated pro 99.1 1E-09 2.2E-14 103.8 13.9 196 147-357 277-473 (791)
34 PF13445 zf-RING_UBOX: RING-ty 99.1 3.4E-11 7.4E-16 77.0 2.1 36 16-52 1-43 (43)
35 KOG1222 Kinesin associated pro 99.1 8.3E-09 1.8E-13 97.8 17.9 256 88-362 307-601 (791)
36 PF11789 zf-Nse: Zinc-finger o 99.1 4.6E-11 9.9E-16 81.7 1.9 44 12-55 10-55 (57)
37 PF03224 V-ATPase_H_N: V-ATPas 99.0 5.2E-09 1.1E-13 99.0 15.2 210 103-324 73-302 (312)
38 PRK09687 putative lyase; Provi 99.0 9.1E-08 2E-12 88.6 22.6 224 87-378 56-279 (280)
39 PF00097 zf-C3HC4: Zinc finger 99.0 1.9E-10 4.1E-15 73.9 3.1 39 16-54 1-41 (41)
40 PF14835 zf-RING_6: zf-RING of 99.0 1.8E-10 3.9E-15 78.6 2.1 60 11-73 5-65 (65)
41 KOG0287 Postreplication repair 98.9 4.6E-10 1E-14 101.0 2.7 65 12-77 22-86 (442)
42 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.2E-09 2.6E-14 73.4 2.9 47 12-59 1-48 (50)
43 PRK09687 putative lyase; Provi 98.9 3.6E-07 7.7E-12 84.7 19.7 225 87-381 25-250 (280)
44 KOG2160 Armadillo/beta-catenin 98.8 3.2E-07 7E-12 84.9 17.8 187 144-336 94-282 (342)
45 PHA02929 N1R/p28-like protein; 98.8 2.6E-09 5.7E-14 94.8 3.9 49 10-59 171-227 (238)
46 cd00256 VATPase_H VATPase_H, r 98.8 3E-06 6.5E-11 82.1 24.7 265 103-379 117-423 (429)
47 PF13639 zf-RING_2: Ring finge 98.8 2.3E-09 4.9E-14 69.9 2.1 40 15-55 2-44 (44)
48 KOG2177 Predicted E3 ubiquitin 98.8 3.3E-09 7.2E-14 100.8 4.0 75 2-79 2-76 (386)
49 cd00162 RING RING-finger (Real 98.8 6.9E-09 1.5E-13 67.8 3.4 43 15-57 1-44 (45)
50 cd00256 VATPase_H VATPase_H, r 98.8 7.8E-06 1.7E-10 79.3 25.6 244 130-381 53-308 (429)
51 COG5432 RAD18 RING-finger-cont 98.7 5.3E-09 1.2E-13 92.4 3.1 64 13-77 25-88 (391)
52 KOG4642 Chaperone-dependent E3 98.7 7.9E-09 1.7E-13 89.9 3.9 75 6-80 204-278 (284)
53 KOG0320 Predicted E3 ubiquitin 98.7 4.9E-09 1.1E-13 86.5 2.3 51 13-64 131-183 (187)
54 KOG0823 Predicted E3 ubiquitin 98.7 6.3E-09 1.4E-13 89.9 2.7 58 12-69 46-105 (230)
55 KOG0317 Predicted E3 ubiquitin 98.7 8.1E-09 1.8E-13 91.9 3.4 52 11-63 237-288 (293)
56 KOG2160 Armadillo/beta-catenin 98.7 1.6E-06 3.4E-11 80.4 18.5 184 191-381 95-283 (342)
57 PRK13800 putative oxidoreducta 98.7 2.7E-06 5.9E-11 91.6 22.6 58 86-160 622-679 (897)
58 smart00184 RING Ring finger. E 98.7 1.8E-08 3.9E-13 63.5 3.2 39 16-54 1-39 (39)
59 TIGR00570 cdk7 CDK-activating 98.6 2.5E-07 5.3E-12 84.7 10.6 88 12-99 2-114 (309)
60 KOG0168 Putative ubiquitin fus 98.6 7.1E-06 1.5E-10 83.1 21.4 260 85-363 167-438 (1051)
61 KOG0168 Putative ubiquitin fus 98.6 1.4E-06 2.9E-11 88.1 16.4 192 181-381 169-364 (1051)
62 PF01602 Adaptin_N: Adaptin N 98.6 2.1E-05 4.6E-10 80.0 24.1 303 36-381 23-333 (526)
63 PHA02926 zinc finger-like prot 98.6 3.7E-08 8.1E-13 84.4 3.1 51 9-59 166-230 (242)
64 KOG0946 ER-Golgi vesicle-tethe 98.5 5.9E-06 1.3E-10 83.0 17.8 211 178-396 21-256 (970)
65 PF14634 zf-RING_5: zinc-RING 98.5 1E-07 2.2E-12 61.9 2.9 41 15-56 1-44 (44)
66 KOG4646 Uncharacterized conser 98.4 2.8E-06 6E-11 67.7 10.5 121 179-303 16-138 (173)
67 PRK13800 putative oxidoreducta 98.4 8.2E-05 1.8E-09 80.3 25.4 231 86-377 653-895 (897)
68 PF05536 Neurochondrin: Neuroc 98.4 3.3E-05 7.2E-10 78.1 20.6 242 131-381 6-261 (543)
69 KOG2042 Ubiquitin fusion degra 98.4 2.1E-07 4.6E-12 96.2 4.9 74 4-78 861-935 (943)
70 KOG2171 Karyopherin (importin) 98.4 6E-05 1.3E-09 79.2 22.4 262 103-381 222-504 (1075)
71 KOG0311 Predicted E3 ubiquitin 98.4 4.2E-08 9E-13 89.5 -1.0 70 8-77 38-109 (381)
72 PF01602 Adaptin_N: Adaptin N 98.4 0.00013 2.8E-09 74.2 23.9 252 88-381 117-369 (526)
73 KOG4646 Uncharacterized conser 98.4 7.9E-06 1.7E-10 65.1 11.4 153 220-378 15-167 (173)
74 KOG1293 Proteins containing ar 98.4 8.1E-06 1.8E-10 80.7 13.8 153 190-349 388-544 (678)
75 KOG2171 Karyopherin (importin) 98.4 0.00026 5.6E-09 74.6 25.5 265 95-374 257-539 (1075)
76 COG5574 PEX10 RING-finger-cont 98.3 3.1E-07 6.8E-12 80.8 2.4 52 11-62 213-265 (271)
77 COG5113 UFD2 Ubiquitin fusion 98.2 1.3E-06 2.7E-11 85.5 5.3 73 4-77 845-918 (929)
78 PF05536 Neurochondrin: Neuroc 98.2 4.3E-05 9.3E-10 77.3 15.6 153 180-338 6-170 (543)
79 KOG1293 Proteins containing ar 98.2 0.0004 8.7E-09 69.1 21.3 142 235-381 390-533 (678)
80 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00061 1.3E-08 65.6 22.0 265 102-379 40-362 (371)
81 PF12678 zf-rbx1: RING-H2 zinc 98.2 2.2E-06 4.8E-11 62.2 3.8 45 9-55 16-73 (73)
82 KOG4159 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 82.4 3.9 74 5-79 76-154 (398)
83 KOG0978 E3 ubiquitin ligase in 98.1 8.1E-07 1.8E-11 89.5 1.4 56 10-65 640-695 (698)
84 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00048 1E-08 65.2 19.2 223 102-336 172-438 (442)
85 KOG3678 SARM protein (with ste 98.1 0.00024 5.3E-09 67.9 17.2 265 87-381 182-452 (832)
86 KOG2660 Locus-specific chromos 98.1 9.8E-07 2.1E-11 80.3 1.1 69 7-76 9-82 (331)
87 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0033 7.1E-08 59.7 23.9 224 149-381 173-438 (442)
88 KOG2164 Predicted E3 ubiquitin 98.0 3.1E-06 6.8E-11 81.4 3.4 54 13-66 186-243 (513)
89 PF00514 Arm: Armadillo/beta-c 98.0 9.3E-06 2E-10 51.8 4.3 41 252-294 1-41 (41)
90 KOG0297 TNF receptor-associate 98.0 5.9E-06 1.3E-10 80.0 4.1 69 7-76 15-85 (391)
91 PF10165 Ric8: Guanine nucleot 98.0 0.0015 3.3E-08 64.7 20.9 264 108-381 2-337 (446)
92 PTZ00429 beta-adaptin; Provisi 98.0 0.0025 5.4E-08 66.7 23.1 254 84-380 31-284 (746)
93 PF00514 Arm: Armadillo/beta-c 97.9 1.6E-05 3.5E-10 50.7 4.5 41 209-251 1-41 (41)
94 KOG0289 mRNA splicing factor [ 97.9 1.9E-05 4.2E-10 74.2 6.7 51 14-65 1-52 (506)
95 COG5222 Uncharacterized conser 97.9 9.5E-06 2.1E-10 72.4 3.9 64 14-77 275-340 (427)
96 KOG1242 Protein containing ada 97.9 0.001 2.3E-08 65.9 17.3 223 129-376 212-439 (569)
97 KOG1789 Endocytosis protein RM 97.8 0.0068 1.5E-07 63.6 23.3 262 103-380 1741-2115(2235)
98 COG5152 Uncharacterized conser 97.8 7E-06 1.5E-10 68.9 1.8 45 14-59 197-241 (259)
99 PF13646 HEAT_2: HEAT repeats; 97.8 0.00016 3.4E-09 54.4 9.0 87 181-290 1-88 (88)
100 KOG2734 Uncharacterized conser 97.8 0.033 7.3E-07 53.4 24.9 246 106-360 103-370 (536)
101 KOG1813 Predicted E3 ubiquitin 97.8 8.4E-06 1.8E-10 73.0 1.0 44 14-58 242-285 (313)
102 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0068 1.5E-07 58.5 20.2 255 108-381 4-269 (371)
103 KOG0824 Predicted E3 ubiquitin 97.7 1.6E-05 3.6E-10 71.3 2.1 47 15-61 9-55 (324)
104 KOG3678 SARM protein (with ste 97.7 0.00097 2.1E-08 63.9 13.7 170 175-353 176-350 (832)
105 KOG2973 Uncharacterized conser 97.7 0.026 5.7E-07 51.7 21.8 272 87-381 5-315 (353)
106 PTZ00429 beta-adaptin; Provisi 97.6 0.042 9.1E-07 57.7 25.8 131 103-252 156-286 (746)
107 TIGR02270 conserved hypothetic 97.6 0.011 2.3E-07 57.8 19.8 222 85-381 54-296 (410)
108 KOG2023 Nuclear transport rece 97.6 0.0031 6.7E-08 63.0 15.7 277 84-382 127-464 (885)
109 PF11841 DUF3361: Domain of un 97.6 0.0021 4.6E-08 53.5 12.4 120 220-339 10-134 (160)
110 KOG2973 Uncharacterized conser 97.5 0.0034 7.4E-08 57.3 14.2 188 181-378 5-201 (353)
111 KOG4413 26S proteasome regulat 97.5 0.049 1.1E-06 50.4 21.3 277 90-381 87-377 (524)
112 PF12348 CLASP_N: CLASP N term 97.5 0.00074 1.6E-08 60.7 9.4 183 95-294 15-206 (228)
113 KOG1789 Endocytosis protein RM 97.4 0.055 1.2E-06 57.2 23.1 106 253-363 2037-2142(2235)
114 KOG0802 E3 ubiquitin ligase [P 97.4 5.8E-05 1.3E-09 76.7 1.6 46 12-58 290-340 (543)
115 KOG3039 Uncharacterized conser 97.4 0.00012 2.5E-09 63.9 3.1 55 11-66 219-277 (303)
116 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00017 3.7E-09 52.9 3.5 47 14-60 33-83 (85)
117 PF13646 HEAT_2: HEAT repeats; 97.4 0.001 2.2E-08 49.9 7.9 88 132-247 1-88 (88)
118 PF12348 CLASP_N: CLASP N term 97.4 0.0027 5.9E-08 57.1 11.9 183 189-381 17-206 (228)
119 smart00185 ARM Armadillo/beta- 97.4 0.00048 1E-08 43.5 5.0 40 253-294 2-41 (41)
120 KOG1517 Guanine nucleotide bin 97.3 0.017 3.6E-07 60.7 18.1 249 72-337 456-733 (1387)
121 TIGR02270 conserved hypothetic 97.3 0.043 9.2E-07 53.7 20.1 119 180-334 87-205 (410)
122 KOG4367 Predicted Zn-finger pr 97.3 8.2E-05 1.8E-09 69.9 1.1 35 11-45 2-36 (699)
123 KOG2734 Uncharacterized conser 97.3 0.11 2.5E-06 49.9 21.7 239 86-337 126-401 (536)
124 COG5369 Uncharacterized conser 97.3 0.0038 8.1E-08 61.0 12.1 264 105-380 407-740 (743)
125 KOG1002 Nucleotide excision re 97.3 0.00013 2.8E-09 70.3 2.1 51 12-62 535-589 (791)
126 KOG3036 Protein involved in ce 97.3 0.015 3.2E-07 51.6 14.5 153 103-260 95-256 (293)
127 PF04641 Rtf2: Rtf2 RING-finge 97.2 0.00025 5.3E-09 65.1 3.6 54 10-65 110-167 (260)
128 KOG4628 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 67.0 2.9 47 14-60 230-279 (348)
129 KOG2879 Predicted E3 ubiquitin 97.2 0.00026 5.7E-09 62.9 3.5 49 11-59 237-287 (298)
130 KOG4413 26S proteasome regulat 97.2 0.034 7.4E-07 51.4 16.6 222 151-381 100-333 (524)
131 KOG2023 Nuclear transport rece 97.2 0.0047 1E-07 61.8 11.7 179 129-316 127-308 (885)
132 KOG2979 Protein involved in DN 97.1 0.00036 7.7E-09 61.7 3.4 45 13-57 176-222 (262)
133 KOG0213 Splicing factor 3b, su 97.1 0.031 6.8E-07 56.8 16.9 151 222-381 800-954 (1172)
134 smart00185 ARM Armadillo/beta- 97.1 0.00087 1.9E-08 42.3 4.2 40 210-251 2-41 (41)
135 COG5369 Uncharacterized conser 97.1 0.024 5.2E-07 55.6 15.4 170 175-350 427-606 (743)
136 KOG0213 Splicing factor 3b, su 97.0 0.005 1.1E-07 62.3 10.4 210 113-336 724-954 (1172)
137 PF11841 DUF3361: Domain of un 97.0 0.024 5.3E-07 47.3 12.8 126 175-303 7-142 (160)
138 PF10165 Ric8: Guanine nucleot 97.0 0.019 4.2E-07 56.9 14.4 158 199-360 1-189 (446)
139 KOG3036 Protein involved in ce 97.0 0.077 1.7E-06 47.2 16.0 177 194-381 94-291 (293)
140 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0025 5.4E-08 43.3 5.6 55 193-249 1-55 (55)
141 COG5240 SEC21 Vesicle coat com 96.9 0.36 7.8E-06 48.1 22.0 268 88-386 267-561 (898)
142 KOG1059 Vesicle coat complex A 96.9 0.48 1E-05 48.5 23.3 251 88-381 147-402 (877)
143 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00061 1.3E-08 63.0 2.8 46 12-58 286-344 (491)
144 COG5181 HSH155 U2 snRNP splice 96.8 0.007 1.5E-07 60.1 9.5 193 130-336 543-759 (975)
145 KOG1517 Guanine nucleotide bin 96.8 0.024 5.3E-07 59.6 13.8 206 181-395 474-684 (1387)
146 KOG4151 Myosin assembly protei 96.7 0.053 1.2E-06 55.7 15.0 243 114-377 489-737 (748)
147 KOG0212 Uncharacterized conser 96.7 0.25 5.3E-06 49.1 18.8 278 87-382 126-407 (675)
148 KOG0804 Cytoplasmic Zn-finger 96.7 0.00091 2E-08 63.6 2.1 43 14-59 176-222 (493)
149 KOG0212 Uncharacterized conser 96.6 0.33 7.2E-06 48.2 19.2 193 176-381 247-444 (675)
150 KOG3039 Uncharacterized conser 96.6 0.0013 2.8E-08 57.5 2.6 37 9-45 39-75 (303)
151 PF04078 Rcd1: Cell differenti 96.6 0.072 1.6E-06 48.1 13.6 153 104-261 67-228 (262)
152 KOG0826 Predicted E3 ubiquitin 96.6 0.0015 3.3E-08 59.6 3.0 51 8-59 295-346 (357)
153 COG5540 RING-finger-containing 96.5 0.002 4.3E-08 58.2 3.0 47 14-60 324-373 (374)
154 COG1413 FOG: HEAT repeat [Ener 96.5 0.22 4.9E-06 47.4 17.5 191 130-378 43-239 (335)
155 KOG1241 Karyopherin (importin) 96.5 0.15 3.2E-06 52.3 16.3 263 94-381 181-477 (859)
156 KOG2817 Predicted E3 ubiquitin 96.5 0.0017 3.7E-08 61.1 2.7 44 13-56 334-382 (394)
157 KOG1734 Predicted RING-contain 96.5 0.00067 1.4E-08 60.1 -0.1 55 12-66 223-288 (328)
158 COG1413 FOG: HEAT repeat [Ener 96.4 0.7 1.5E-05 44.0 20.5 184 86-334 44-240 (335)
159 KOG1077 Vesicle coat complex A 96.4 0.76 1.7E-05 46.9 20.6 253 103-381 127-433 (938)
160 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0063 1.4E-07 41.3 4.6 55 236-292 1-55 (55)
161 KOG3113 Uncharacterized conser 96.4 0.0025 5.4E-08 56.0 2.8 52 11-65 109-164 (293)
162 PF08045 CDC14: Cell division 96.3 0.049 1.1E-06 49.4 10.9 99 195-294 107-207 (257)
163 KOG1242 Protein containing ada 96.3 0.68 1.5E-05 46.5 19.4 184 177-381 211-401 (569)
164 PF09759 Atx10homo_assoc: Spin 96.3 0.027 5.8E-07 43.4 7.6 66 238-303 2-69 (102)
165 COG5231 VMA13 Vacuolar H+-ATPa 96.2 0.55 1.2E-05 43.5 16.8 227 150-383 166-430 (432)
166 KOG1645 RING-finger-containing 96.2 0.0022 4.8E-08 60.3 1.6 59 14-72 5-69 (463)
167 KOG2259 Uncharacterized conser 96.2 0.034 7.4E-07 55.8 9.8 182 132-333 236-472 (823)
168 KOG1241 Karyopherin (importin) 96.1 0.39 8.4E-06 49.4 16.7 195 130-339 319-533 (859)
169 KOG2999 Regulator of Rac1, req 96.0 0.15 3.2E-06 50.4 13.1 155 222-381 84-242 (713)
170 KOG2274 Predicted importin 9 [ 96.0 0.25 5.3E-06 51.6 15.2 192 182-381 493-689 (1005)
171 PF06371 Drf_GBD: Diaphanous G 96.0 0.028 6E-07 48.7 7.6 83 254-336 98-187 (187)
172 KOG2999 Regulator of Rac1, req 96.0 0.32 6.9E-06 48.2 15.1 157 181-339 85-245 (713)
173 PF14447 Prok-RING_4: Prokaryo 95.9 0.0047 1E-07 41.1 1.7 47 13-62 7-53 (55)
174 KOG1062 Vesicle coat complex A 95.9 0.62 1.3E-05 48.2 17.3 148 225-381 354-544 (866)
175 PF11701 UNC45-central: Myosin 95.9 0.19 4.2E-06 42.3 11.9 147 179-332 3-155 (157)
176 PF04078 Rcd1: Cell differenti 95.9 1.3 2.9E-05 40.1 18.3 187 191-381 7-218 (262)
177 smart00744 RINGv The RING-vari 95.6 0.013 2.7E-07 38.8 3.0 41 15-55 1-49 (49)
178 PF02891 zf-MIZ: MIZ/SP-RING z 95.6 0.011 2.5E-07 39.2 2.7 45 13-57 2-50 (50)
179 KOG2611 Neurochondrin/leucine- 95.6 0.78 1.7E-05 44.8 15.9 177 151-335 29-224 (698)
180 PF13764 E3_UbLigase_R4: E3 ub 95.6 3.8 8.3E-05 43.6 22.3 241 87-336 119-406 (802)
181 PF05004 IFRD: Interferon-rela 95.5 1.8 3.9E-05 40.9 18.0 194 181-382 45-258 (309)
182 PF05004 IFRD: Interferon-rela 95.4 1.9 4.2E-05 40.6 18.0 180 147-335 57-256 (309)
183 PF07814 WAPL: Wings apart-lik 95.4 1.2 2.7E-05 42.9 17.0 236 84-338 20-301 (361)
184 KOG1059 Vesicle coat complex A 95.4 3.6 7.8E-05 42.4 20.2 189 84-303 180-373 (877)
185 KOG1824 TATA-binding protein-i 95.3 2.4 5.3E-05 44.9 19.3 174 86-274 569-745 (1233)
186 KOG4172 Predicted E3 ubiquitin 95.3 0.0032 7E-08 41.4 -0.6 45 15-59 9-54 (62)
187 KOG1248 Uncharacterized conser 95.3 1.2 2.7E-05 48.1 17.5 220 146-381 667-898 (1176)
188 PF14570 zf-RING_4: RING/Ubox 95.3 0.017 3.8E-07 37.6 2.6 43 16-58 1-47 (48)
189 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.15 3.2E-06 39.1 8.2 92 196-294 3-96 (97)
190 KOG1039 Predicted E3 ubiquitin 95.3 0.011 2.3E-07 55.8 2.2 49 11-59 159-221 (344)
191 KOG1824 TATA-binding protein-i 95.2 1 2.2E-05 47.6 16.2 267 89-381 9-286 (1233)
192 KOG2025 Chromosome condensatio 95.2 0.61 1.3E-05 47.7 14.3 186 178-378 84-291 (892)
193 PF11701 UNC45-central: Myosin 95.2 0.26 5.6E-06 41.5 10.3 146 132-290 5-155 (157)
194 PF11698 V-ATPase_H_C: V-ATPas 95.2 0.069 1.5E-06 42.3 6.2 70 179-250 43-114 (119)
195 PF13764 E3_UbLigase_R4: E3 ub 95.2 4 8.7E-05 43.4 20.9 245 124-381 112-406 (802)
196 KOG1062 Vesicle coat complex A 95.1 2 4.3E-05 44.7 17.8 140 185-336 258-414 (866)
197 KOG1061 Vesicle coat complex A 95.1 1.2 2.7E-05 45.9 16.2 244 103-381 137-415 (734)
198 KOG2611 Neurochondrin/leucine- 95.1 1.7 3.6E-05 42.7 16.2 147 184-335 16-181 (698)
199 KOG1077 Vesicle coat complex A 95.0 4.1 8.8E-05 42.0 19.4 145 182-335 259-432 (938)
200 PF04063 DUF383: Domain of unk 95.0 0.29 6.3E-06 42.6 10.3 121 238-361 11-157 (192)
201 COG5096 Vesicle coat complex, 95.0 0.78 1.7E-05 47.9 14.7 162 103-295 35-196 (757)
202 PF14668 RICTOR_V: Rapamycin-i 94.9 0.17 3.7E-06 36.4 7.2 66 238-304 3-68 (73)
203 PF12717 Cnd1: non-SMC mitotic 94.9 1.9 4.2E-05 37.0 15.3 91 148-252 3-93 (178)
204 COG5627 MMS21 DNA repair prote 94.9 0.027 5.8E-07 49.1 3.4 57 14-70 190-250 (275)
205 PF06371 Drf_GBD: Diaphanous G 94.6 0.42 9.2E-06 41.2 10.5 113 86-207 67-186 (187)
206 PF08569 Mo25: Mo25-like; Int 94.6 4.3 9.4E-05 38.7 18.9 196 177-381 74-283 (335)
207 KOG3800 Predicted E3 ubiquitin 94.5 0.024 5.2E-07 51.2 2.4 49 15-63 2-55 (300)
208 PF12717 Cnd1: non-SMC mitotic 94.5 1.1 2.4E-05 38.5 12.8 93 192-295 1-93 (178)
209 PF04063 DUF383: Domain of unk 94.5 0.58 1.3E-05 40.8 10.8 94 179-273 52-157 (192)
210 COG5109 Uncharacterized conser 94.5 0.022 4.8E-07 51.8 2.1 45 12-56 335-384 (396)
211 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.12 2.5E-06 41.1 5.6 72 220-293 42-114 (119)
212 PF11793 FANCL_C: FANCL C-term 94.2 0.014 3E-07 41.9 0.1 47 13-59 2-66 (70)
213 KOG1785 Tyrosine kinase negati 94.2 0.023 5.1E-07 53.3 1.6 48 15-62 371-419 (563)
214 KOG0825 PHD Zn-finger protein 94.2 0.01 2.3E-07 60.2 -0.8 45 15-60 125-172 (1134)
215 KOG1001 Helicase-like transcri 94.1 0.012 2.7E-07 60.8 -0.3 48 14-62 455-503 (674)
216 COG5181 HSH155 U2 snRNP splice 94.1 0.2 4.3E-06 50.2 7.9 152 221-381 604-759 (975)
217 PF08324 PUL: PUL domain; Int 94.1 1.1 2.5E-05 41.1 12.7 190 86-284 64-264 (268)
218 KOG0828 Predicted E3 ubiquitin 94.0 0.026 5.6E-07 54.5 1.6 51 10-60 568-635 (636)
219 PF09759 Atx10homo_assoc: Spin 94.0 0.26 5.6E-06 38.0 6.7 61 104-166 3-63 (102)
220 PF08045 CDC14: Cell division 93.9 0.81 1.8E-05 41.6 10.8 97 238-336 107-207 (257)
221 KOG0827 Predicted E3 ubiquitin 93.9 0.039 8.4E-07 51.8 2.4 50 13-62 4-59 (465)
222 PF08569 Mo25: Mo25-like; Int 93.7 3 6.6E-05 39.7 14.9 185 101-298 90-287 (335)
223 COG5209 RCD1 Uncharacterized p 93.7 0.46 9.9E-06 41.8 8.4 151 104-260 117-277 (315)
224 KOG1061 Vesicle coat complex A 93.6 0.9 2E-05 46.8 11.6 106 179-296 86-191 (734)
225 PF06025 DUF913: Domain of Unk 93.5 5 0.00011 39.0 16.2 127 130-261 106-243 (379)
226 PF11707 Npa1: Ribosome 60S bi 93.5 5.7 0.00012 37.8 16.6 162 87-254 58-240 (330)
227 PF12755 Vac14_Fab1_bd: Vacuol 93.4 0.39 8.4E-06 36.8 6.9 69 178-249 26-94 (97)
228 PF12031 DUF3518: Domain of un 93.4 0.26 5.7E-06 43.9 6.6 125 194-321 81-230 (257)
229 KOG4185 Predicted E3 ubiquitin 93.3 0.085 1.8E-06 49.5 3.7 63 14-76 4-77 (296)
230 KOG1078 Vesicle coat complex C 93.2 8.7 0.00019 40.1 17.7 246 103-381 261-532 (865)
231 KOG4692 Predicted E3 ubiquitin 93.2 0.057 1.2E-06 50.0 2.2 47 12-59 421-467 (489)
232 PF06025 DUF913: Domain of Unk 93.1 7.9 0.00017 37.6 17.0 126 178-303 105-242 (379)
233 PF12719 Cnd3: Nuclear condens 93.1 5.6 0.00012 37.2 15.7 175 146-336 40-233 (298)
234 PF02985 HEAT: HEAT repeat; I 92.9 0.18 3.9E-06 29.6 3.5 29 222-251 1-29 (31)
235 PF08167 RIX1: rRNA processing 92.8 2.2 4.7E-05 36.2 11.4 112 179-294 25-143 (165)
236 KOG3161 Predicted E3 ubiquitin 92.8 0.042 9.2E-07 54.8 0.9 61 10-74 8-77 (861)
237 COG5194 APC11 Component of SCF 92.7 0.097 2.1E-06 37.6 2.4 45 15-60 33-82 (88)
238 PF02985 HEAT: HEAT repeat; I 92.7 0.2 4.3E-06 29.4 3.5 28 181-208 2-29 (31)
239 COG5215 KAP95 Karyopherin (imp 92.6 13 0.00028 37.6 20.6 263 103-382 150-438 (858)
240 COG5209 RCD1 Uncharacterized p 92.6 0.99 2.2E-05 39.8 8.8 177 196-380 117-311 (315)
241 KOG0414 Chromosome condensatio 92.5 1.1 2.3E-05 48.4 10.6 140 222-381 920-1064(1251)
242 KOG0301 Phospholipase A2-activ 92.1 11 0.00023 38.7 16.5 173 150-329 561-739 (745)
243 KOG1240 Protein kinase contain 92.1 10 0.00023 41.5 17.2 255 103-381 439-725 (1431)
244 KOG1788 Uncharacterized conser 92.1 4.8 0.0001 43.4 14.4 259 109-385 664-986 (2799)
245 KOG4653 Uncharacterized conser 92.0 8.5 0.00018 40.6 16.0 213 149-381 743-964 (982)
246 KOG1020 Sister chromatid cohes 92.0 3.5 7.6E-05 45.9 13.9 233 31-292 712-958 (1692)
247 KOG1493 Anaphase-promoting com 91.9 0.062 1.3E-06 38.2 0.6 47 13-59 31-81 (84)
248 COG5096 Vesicle coat complex, 91.9 7.7 0.00017 40.8 15.8 144 179-335 38-194 (757)
249 KOG0915 Uncharacterized conser 91.9 11 0.00025 42.2 17.4 263 99-380 969-1264(1702)
250 COG5231 VMA13 Vacuolar H+-ATPa 91.5 12 0.00026 35.0 16.9 221 106-335 168-427 (432)
251 KOG2259 Uncharacterized conser 91.5 1.2 2.6E-05 45.2 9.2 115 125-259 369-483 (823)
252 KOG1571 Predicted E3 ubiquitin 91.4 0.13 2.7E-06 48.2 2.3 47 8-58 300-346 (355)
253 PF08324 PUL: PUL domain; Int 91.2 5 0.00011 36.9 12.8 193 181-375 65-268 (268)
254 KOG2032 Uncharacterized conser 91.1 15 0.00032 36.5 15.7 163 130-301 254-422 (533)
255 PF05290 Baculo_IE-1: Baculovi 90.9 0.26 5.5E-06 39.4 3.2 51 12-62 79-135 (140)
256 PF14668 RICTOR_V: Rapamycin-i 90.8 1.3 2.9E-05 31.8 6.6 67 196-263 4-70 (73)
257 PF12460 MMS19_C: RNAPII trans 90.8 9.1 0.0002 37.7 14.9 185 180-381 190-394 (415)
258 PF12460 MMS19_C: RNAPII trans 90.7 18 0.00038 35.7 16.8 111 221-338 271-396 (415)
259 KOG1058 Vesicle coat complex C 90.7 12 0.00027 38.9 15.4 145 178-337 316-464 (948)
260 PRK14707 hypothetical protein; 90.5 42 0.00091 39.5 23.3 238 84-336 792-1034(2710)
261 KOG1240 Protein kinase contain 90.4 4.5 9.7E-05 44.1 12.6 228 132-381 424-685 (1431)
262 KOG4653 Uncharacterized conser 90.4 4.8 0.0001 42.4 12.4 187 181-381 729-918 (982)
263 COG5175 MOT2 Transcriptional r 90.2 0.24 5.3E-06 45.7 2.9 48 15-62 16-67 (480)
264 KOG1060 Vesicle coat complex A 90.2 27 0.00058 36.7 17.7 208 89-337 39-247 (968)
265 cd03569 VHS_Hrs_Vps27p VHS dom 90.1 1.5 3.2E-05 36.2 7.3 73 308-381 42-114 (142)
266 PF07814 WAPL: Wings apart-lik 90.1 19 0.00041 34.8 17.1 195 181-379 23-294 (361)
267 PF05918 API5: Apoptosis inhib 89.6 5.6 0.00012 40.4 12.1 111 71-204 44-158 (556)
268 cd03568 VHS_STAM VHS domain fa 89.4 1.8 3.8E-05 35.9 7.2 73 308-381 38-110 (144)
269 PRK14707 hypothetical protein; 89.3 52 0.0011 38.8 22.9 267 87-372 165-436 (2710)
270 KOG1943 Beta-tubulin folding c 89.1 6.8 0.00015 42.3 12.7 153 220-381 340-501 (1133)
271 KOG2274 Predicted importin 9 [ 88.8 34 0.00073 36.6 17.1 156 128-295 528-690 (1005)
272 KOG4535 HEAT and armadillo rep 88.8 0.97 2.1E-05 44.2 5.9 160 90-253 438-605 (728)
273 PF12031 DUF3518: Domain of un 88.8 1.9 4.1E-05 38.6 7.2 81 193-273 138-226 (257)
274 cd03561 VHS VHS domain family; 88.7 2.6 5.7E-05 34.3 7.7 73 308-381 38-112 (133)
275 KOG0883 Cyclophilin type, U bo 88.3 0.36 7.9E-06 45.5 2.7 33 14-46 41-73 (518)
276 KOG4275 Predicted E3 ubiquitin 88.3 0.14 3E-06 46.4 -0.1 39 13-58 300-341 (350)
277 KOG1060 Vesicle coat complex A 88.2 37 0.00081 35.8 21.4 39 229-274 295-333 (968)
278 PF00790 VHS: VHS domain; Int 88.1 1.7 3.7E-05 35.7 6.3 73 308-381 43-118 (140)
279 KOG4362 Transcriptional regula 88.0 0.21 4.6E-06 51.0 1.0 67 10-76 18-86 (684)
280 KOG1943 Beta-tubulin folding c 87.7 46 0.001 36.3 20.8 244 87-371 343-601 (1133)
281 KOG4535 HEAT and armadillo rep 87.5 1.6 3.5E-05 42.8 6.5 182 195-380 407-602 (728)
282 KOG4151 Myosin assembly protei 87.3 8.3 0.00018 40.2 11.8 187 175-372 500-690 (748)
283 KOG0567 HEAT repeat-containing 87.2 23 0.0005 32.3 17.6 63 263-336 218-280 (289)
284 KOG1967 DNA repair/transcripti 87.2 3.8 8.2E-05 43.4 9.3 146 130-287 867-1017(1030)
285 PF12719 Cnd3: Nuclear condens 87.1 26 0.00057 32.7 17.2 167 93-274 35-208 (298)
286 KOG0301 Phospholipase A2-activ 87.1 21 0.00044 36.8 14.0 158 103-274 560-727 (745)
287 PF14726 RTTN_N: Rotatin, an a 87.0 7.6 0.00016 29.7 8.7 95 194-291 2-97 (98)
288 KOG1020 Sister chromatid cohes 87.0 23 0.0005 39.9 15.3 168 197-386 795-965 (1692)
289 COG5218 YCG1 Chromosome conden 86.9 39 0.00084 34.5 16.0 100 263-372 91-190 (885)
290 COG5219 Uncharacterized conser 86.5 0.29 6.4E-06 51.2 1.0 44 15-58 1471-1522(1525)
291 KOG0298 DEAD box-containing he 86.3 0.2 4.4E-06 54.2 -0.2 45 10-55 1150-1195(1394)
292 KOG1820 Microtubule-associated 86.2 29 0.00064 37.2 15.4 175 101-294 267-443 (815)
293 PF05918 API5: Apoptosis inhib 86.1 14 0.0003 37.7 12.4 121 190-333 33-159 (556)
294 KOG4265 Predicted E3 ubiquitin 86.0 0.46 1E-05 44.5 2.0 47 13-60 290-337 (349)
295 cd03567 VHS_GGA VHS domain fam 86.0 4 8.7E-05 33.5 7.3 73 308-381 39-116 (139)
296 smart00288 VHS Domain present 86.0 3.7 8E-05 33.4 7.1 73 308-381 38-111 (133)
297 PF04641 Rtf2: Rtf2 RING-finge 85.8 0.65 1.4E-05 42.6 2.8 37 9-45 30-67 (260)
298 KOG1967 DNA repair/transcripti 85.2 8.4 0.00018 40.9 10.6 149 178-331 866-1019(1030)
299 cd03569 VHS_Hrs_Vps27p VHS dom 84.5 5 0.00011 33.1 7.3 71 180-251 42-114 (142)
300 KOG2930 SCF ubiquitin ligase, 84.4 0.65 1.4E-05 35.2 1.7 27 30-57 80-106 (114)
301 KOG2956 CLIP-associating prote 84.3 35 0.00077 33.7 13.7 186 132-337 285-478 (516)
302 KOG1058 Vesicle coat complex C 84.0 26 0.00056 36.7 13.2 63 88-160 137-199 (948)
303 cd03568 VHS_STAM VHS domain fa 83.5 5.7 0.00012 32.8 7.2 71 180-251 38-110 (144)
304 KOG0396 Uncharacterized conser 83.5 0.93 2E-05 42.7 2.7 49 14-62 331-382 (389)
305 PF14500 MMS19_N: Dos2-interac 83.4 32 0.0007 31.5 12.8 190 184-381 4-237 (262)
306 KOG1940 Zn-finger protein [Gen 82.4 0.88 1.9E-05 41.6 2.1 43 13-56 158-204 (276)
307 COG5218 YCG1 Chromosome conden 81.6 66 0.0014 32.9 15.4 111 178-299 90-201 (885)
308 KOG4739 Uncharacterized protei 80.9 1.2 2.6E-05 39.6 2.4 50 24-78 15-65 (233)
309 PF04499 SAPS: SIT4 phosphatas 80.8 19 0.00041 36.2 11.0 124 117-250 8-147 (475)
310 KOG0414 Chromosome condensatio 80.6 15 0.00032 40.2 10.5 142 180-337 920-1065(1251)
311 PF14225 MOR2-PAG1_C: Cell mor 80.1 48 0.001 30.4 14.3 155 126-293 60-253 (262)
312 cd03561 VHS VHS domain family; 79.7 11 0.00023 30.7 7.5 71 180-251 38-112 (133)
313 PF14353 CpXC: CpXC protein 79.3 1.1 2.3E-05 36.3 1.5 47 13-59 1-49 (128)
314 KOG0825 PHD Zn-finger protein 79.0 1.4 2.9E-05 45.6 2.3 51 6-56 89-151 (1134)
315 PF05605 zf-Di19: Drought indu 79.0 1.1 2.3E-05 30.2 1.2 38 12-56 1-39 (54)
316 PF07191 zinc-ribbons_6: zinc- 78.9 0.25 5.3E-06 35.0 -2.0 41 13-59 1-41 (70)
317 COG5215 KAP95 Karyopherin (imp 78.8 81 0.0018 32.2 18.0 112 131-250 598-710 (858)
318 KOG2956 CLIP-associating prote 78.7 72 0.0016 31.6 15.8 168 192-376 300-472 (516)
319 smart00288 VHS Domain present 78.7 10 0.00022 30.9 7.0 71 180-251 38-111 (133)
320 PF10272 Tmpp129: Putative tra 78.4 1.5 3.2E-05 41.9 2.3 38 26-63 301-355 (358)
321 KOG1814 Predicted E3 ubiquitin 78.2 2.3 4.9E-05 40.8 3.4 58 13-74 184-251 (445)
322 PF10367 Vps39_2: Vacuolar sor 77.8 0.85 1.8E-05 35.4 0.5 36 6-41 71-108 (109)
323 KOG2933 Uncharacterized conser 77.7 17 0.00036 33.9 8.7 137 181-331 90-229 (334)
324 KOG2032 Uncharacterized conser 77.5 30 0.00065 34.4 10.8 155 220-381 253-416 (533)
325 KOG3002 Zn finger protein [Gen 77.5 2.4 5.3E-05 39.5 3.4 61 10-77 45-106 (299)
326 COG5240 SEC21 Vesicle coat com 77.2 90 0.002 31.9 15.8 32 179-210 303-334 (898)
327 PLN02189 cellulose synthase 77.1 1.7 3.7E-05 46.8 2.6 45 15-59 36-87 (1040)
328 COG5220 TFB3 Cdk activating ki 76.7 0.79 1.7E-05 40.3 -0.0 48 12-59 9-64 (314)
329 cd03567 VHS_GGA VHS domain fam 76.5 13 0.00029 30.5 7.1 70 180-250 39-115 (139)
330 PF08167 RIX1: rRNA processing 76.2 27 0.00059 29.5 9.3 114 220-338 24-145 (165)
331 KOG1812 Predicted E3 ubiquitin 75.6 1.8 3.8E-05 42.2 2.0 45 13-57 146-199 (384)
332 KOG1248 Uncharacterized conser 75.3 42 0.00092 36.9 12.1 184 103-303 713-909 (1176)
333 KOG2025 Chromosome condensatio 75.1 11 0.00025 38.9 7.5 100 264-373 86-185 (892)
334 PF00790 VHS: VHS domain; Int 75.1 13 0.00029 30.4 6.9 70 180-250 43-117 (140)
335 PF13251 DUF4042: Domain of un 74.9 24 0.00051 30.5 8.6 139 195-337 2-175 (182)
336 KOG1820 Microtubule-associated 74.3 87 0.0019 33.7 14.1 140 186-336 260-400 (815)
337 PLN02195 cellulose synthase A 73.9 2.8 6E-05 45.0 3.1 45 15-59 8-59 (977)
338 PHA02862 5L protein; Provision 73.2 3.3 7.2E-05 33.7 2.7 45 15-60 4-54 (156)
339 KOG1788 Uncharacterized conser 73.2 1.5E+02 0.0033 32.8 15.1 81 254-337 899-983 (2799)
340 COG3813 Uncharacterized protei 72.9 3.3 7.2E-05 29.2 2.3 36 32-70 28-63 (84)
341 PF07800 DUF1644: Protein of u 72.6 1.5 3.3E-05 36.3 0.7 25 12-37 1-25 (162)
342 KOG2137 Protein kinase [Signal 72.5 24 0.00051 36.7 9.1 138 178-325 388-526 (700)
343 COG5098 Chromosome condensatio 72.4 71 0.0015 33.4 12.2 152 220-379 239-413 (1128)
344 PF12726 SEN1_N: SEN1 N termin 72.3 39 0.00084 36.1 11.3 126 220-349 440-566 (727)
345 KOG4464 Signaling protein RIC- 72.1 1E+02 0.0022 30.1 14.0 157 181-338 47-233 (532)
346 PF11864 DUF3384: Domain of un 71.8 41 0.0009 33.7 10.8 81 187-273 36-117 (464)
347 KOG0211 Protein phosphatase 2A 71.8 1.5E+02 0.0032 31.8 15.2 261 87-381 84-345 (759)
348 KOG3665 ZYG-1-like serine/thre 71.8 1.4E+02 0.0031 31.7 17.1 91 245-337 494-588 (699)
349 PF08216 CTNNBL: Catenin-beta- 71.5 9.7 0.00021 29.6 4.8 43 237-281 61-103 (108)
350 KOG2062 26S proteasome regulat 71.4 67 0.0015 33.8 11.8 143 220-381 553-695 (929)
351 cd00197 VHS_ENTH_ANTH VHS, ENT 71.3 21 0.00045 28.0 7.0 72 308-380 38-114 (115)
352 PF10363 DUF2435: Protein of u 71.3 19 0.0004 27.3 6.3 71 181-254 5-75 (92)
353 PHA02825 LAP/PHD finger-like p 71.2 4.9 0.00011 33.4 3.3 47 12-59 7-59 (162)
354 KOG2114 Vacuolar assembly/sort 71.1 2.3 4.9E-05 44.5 1.7 38 15-56 842-880 (933)
355 COG5116 RPN2 26S proteasome re 71.0 1.2E+02 0.0025 31.1 13.1 100 178-294 550-650 (926)
356 KOG1991 Nuclear transport rece 71.0 63 0.0014 34.9 11.9 158 106-273 391-557 (1010)
357 COG4530 Uncharacterized protei 70.5 3.1 6.7E-05 32.0 1.8 32 12-43 8-44 (129)
358 PRK11088 rrmA 23S rRNA methylt 69.9 2.3 5E-05 39.2 1.3 27 13-39 2-31 (272)
359 PF12906 RINGv: RING-variant d 69.8 4.3 9.4E-05 26.4 2.2 37 18-54 3-47 (47)
360 KOG1949 Uncharacterized conser 69.8 1.1E+02 0.0024 32.0 12.9 178 184-376 179-366 (1005)
361 KOG0211 Protein phosphatase 2A 69.7 1.6E+02 0.0035 31.5 16.1 253 103-381 371-625 (759)
362 COG5236 Uncharacterized conser 69.6 3.8 8.1E-05 38.3 2.5 48 10-57 58-106 (493)
363 PF14446 Prok-RING_1: Prokaryo 69.4 4.2 9.2E-05 27.2 2.1 29 14-42 6-38 (54)
364 COG5098 Chromosome condensatio 69.1 26 0.00057 36.4 8.4 128 234-381 908-1037(1128)
365 PF11865 DUF3385: Domain of un 69.1 69 0.0015 26.9 10.5 147 128-292 8-155 (160)
366 cd03565 VHS_Tom1 VHS domain fa 67.2 32 0.0007 28.2 7.5 72 309-381 40-115 (141)
367 PLN02436 cellulose synthase A 67.1 4.1 8.9E-05 44.2 2.6 45 15-59 38-89 (1094)
368 KOG2137 Protein kinase [Signal 66.2 78 0.0017 33.1 11.2 129 131-274 390-519 (700)
369 KOG0915 Uncharacterized conser 66.1 52 0.0011 37.4 10.5 157 175-338 952-1115(1702)
370 KOG2038 CAATT-binding transcri 66.0 1.5E+02 0.0032 31.5 13.0 116 221-349 304-422 (988)
371 cd00730 rubredoxin Rubredoxin; 65.9 2.8 6.2E-05 27.7 0.7 13 9-21 30-42 (50)
372 PF14726 RTTN_N: Rotatin, an a 65.1 48 0.001 25.4 7.4 94 102-203 2-95 (98)
373 PF11864 DUF3384: Domain of un 65.0 1.6E+02 0.0034 29.6 23.0 250 87-363 29-313 (464)
374 KOG3665 ZYG-1-like serine/thre 64.7 69 0.0015 34.0 11.0 170 110-289 494-692 (699)
375 PF00096 zf-C2H2: Zinc finger, 64.4 2.2 4.8E-05 22.7 0.0 15 14-28 1-15 (23)
376 PF03854 zf-P11: P-11 zinc fin 64.4 3 6.5E-05 27.0 0.6 30 30-60 18-47 (50)
377 PF14500 MMS19_N: Dos2-interac 64.2 1.2E+02 0.0026 27.9 19.2 220 92-338 6-239 (262)
378 PLN02638 cellulose synthase A 64.0 4.8 0.00011 43.7 2.4 45 15-59 19-70 (1079)
379 KOG2933 Uncharacterized conser 64.0 67 0.0015 30.1 9.4 133 222-374 89-227 (334)
380 PF00301 Rubredoxin: Rubredoxi 63.9 3.3 7.1E-05 27.0 0.7 14 8-21 29-42 (47)
381 PF14225 MOR2-PAG1_C: Cell mor 63.6 1.2E+02 0.0026 27.8 14.2 137 87-249 113-252 (262)
382 KOG1848 Uncharacterized conser 63.4 39 0.00085 37.9 8.9 183 130-322 840-1031(1610)
383 KOG1941 Acetylcholine receptor 62.9 3.8 8.2E-05 38.9 1.2 43 13-55 365-412 (518)
384 PF04821 TIMELESS: Timeless pr 62.7 1.3E+02 0.0027 27.7 13.4 104 103-209 10-150 (266)
385 KOG2462 C2H2-type Zn-finger pr 62.7 2.8 6.1E-05 38.0 0.4 13 49-61 216-228 (279)
386 cd03572 ENTH_epsin_related ENT 62.4 68 0.0015 25.7 8.1 77 61-140 14-92 (122)
387 PF06844 DUF1244: Protein of u 62.1 4.7 0.0001 28.0 1.2 11 35-45 12-22 (68)
388 KOG0567 HEAT repeat-containing 61.5 1.1E+02 0.0024 28.1 10.0 60 177-248 216-277 (289)
389 PF13811 DUF4186: Domain of un 61.0 5.5 0.00012 30.8 1.6 20 25-45 64-86 (111)
390 KOG2062 26S proteasome regulat 60.5 50 0.0011 34.6 8.6 120 179-318 554-676 (929)
391 PRK01343 zinc-binding protein; 60.4 7.7 0.00017 26.3 2.1 36 13-48 9-44 (57)
392 KOG0314 Predicted E3 ubiquitin 59.6 4.8 0.0001 39.5 1.3 68 8-77 214-285 (448)
393 KOG1087 Cytosolic sorting prot 59.5 29 0.00063 34.6 6.7 73 309-382 40-113 (470)
394 cd00350 rubredoxin_like Rubred 59.5 7.3 0.00016 23.1 1.7 10 48-57 17-26 (33)
395 PF14205 Cys_rich_KTR: Cystein 59.4 4.5 9.8E-05 27.0 0.8 14 12-25 3-16 (55)
396 PF01347 Vitellogenin_N: Lipop 59.3 2.2E+02 0.0049 29.5 14.4 95 179-291 486-586 (618)
397 PLN03205 ATR interacting prote 58.8 37 0.0008 32.9 6.9 63 319-381 384-446 (652)
398 PLN02915 cellulose synthase A 58.5 6.9 0.00015 42.5 2.4 46 14-59 16-68 (1044)
399 KOG1991 Nuclear transport rece 58.5 2.8E+02 0.0061 30.3 19.1 180 149-338 478-673 (1010)
400 KOG3899 Uncharacterized conser 58.2 4.9 0.00011 36.6 1.1 28 35-62 329-368 (381)
401 cd03572 ENTH_epsin_related ENT 58.1 96 0.0021 24.8 10.1 92 283-381 19-119 (122)
402 PF10571 UPF0547: Uncharacteri 58.1 5.9 0.00013 22.2 1.0 8 16-23 3-10 (26)
403 PF14631 FancD2: Fanconi anaem 57.8 3.6E+02 0.0078 31.4 21.3 230 131-381 228-502 (1426)
404 PF01347 Vitellogenin_N: Lipop 56.9 2.5E+02 0.0053 29.2 16.0 178 122-333 385-586 (618)
405 PF10363 DUF2435: Protein of u 56.9 35 0.00075 25.8 5.4 69 222-294 4-72 (92)
406 PF06676 DUF1178: Protein of u 56.6 10 0.00022 31.4 2.6 33 30-67 9-52 (148)
407 PF08389 Xpo1: Exportin 1-like 56.6 1E+02 0.0022 24.7 9.5 105 179-289 26-148 (148)
408 PF10521 DUF2454: Protein of u 56.4 1.7E+02 0.0036 27.1 11.3 71 179-250 119-202 (282)
409 PF06416 DUF1076: Protein of u 55.7 10 0.00023 29.4 2.3 50 11-61 38-93 (113)
410 smart00531 TFIIE Transcription 55.5 6.9 0.00015 32.5 1.5 40 11-62 97-137 (147)
411 PF08506 Cse1: Cse1; InterPro 55.0 1.7E+02 0.0036 28.4 11.1 129 192-331 224-370 (370)
412 PF14569 zf-UDP: Zinc-binding 54.4 9.8 0.00021 27.5 1.9 45 15-59 11-62 (80)
413 COG3809 Uncharacterized protei 54.2 2.7 5.9E-05 30.2 -0.9 34 14-47 2-35 (88)
414 PF11865 DUF3385: Domain of un 53.5 1.3E+02 0.0029 25.1 12.6 138 220-372 9-148 (160)
415 PHA03096 p28-like protein; Pro 53.3 8.2 0.00018 35.8 1.8 43 14-56 179-231 (284)
416 smart00638 LPD_N Lipoprotein N 52.8 2.8E+02 0.006 28.5 19.8 132 180-332 394-541 (574)
417 PF13894 zf-C2H2_4: C2H2-type 52.0 5.2 0.00011 21.0 0.2 13 14-26 1-13 (24)
418 PF12231 Rif1_N: Rap1-interact 52.0 2.3E+02 0.005 27.4 13.2 136 235-381 59-204 (372)
419 PF06906 DUF1272: Protein of u 50.8 17 0.00036 24.5 2.4 26 34-62 30-55 (57)
420 KOG4464 Signaling protein RIC- 50.6 2.6E+02 0.0056 27.5 13.7 83 102-190 112-198 (532)
421 PF13251 DUF4042: Domain of un 50.5 1.7E+02 0.0036 25.3 9.3 72 222-295 102-175 (182)
422 PLN02400 cellulose synthase 49.7 9 0.0002 41.8 1.6 45 15-59 38-89 (1085)
423 PF01365 RYDR_ITPR: RIH domain 49.5 86 0.0019 27.4 7.6 103 255-363 34-154 (207)
424 smart00638 LPD_N Lipoprotein N 49.1 3.2E+02 0.0069 28.1 16.9 143 177-337 355-510 (574)
425 COG5116 RPN2 26S proteasome re 49.0 1.2E+02 0.0026 31.0 8.9 122 220-361 550-672 (926)
426 PRK00420 hypothetical protein; 48.6 7.3 0.00016 30.6 0.6 14 46-59 38-51 (112)
427 PF12530 DUF3730: Protein of u 48.4 2E+02 0.0044 25.7 13.2 139 181-336 2-151 (234)
428 PF13240 zinc_ribbon_2: zinc-r 47.5 4.4 9.4E-05 22.0 -0.6 8 49-56 14-21 (23)
429 PF09538 FYDLN_acid: Protein o 47.0 16 0.00035 28.5 2.2 25 14-38 10-39 (108)
430 TIGR02300 FYDLN_acid conserved 46.3 12 0.00025 30.0 1.3 25 14-38 10-39 (129)
431 PF04499 SAPS: SIT4 phosphatas 46.1 2.1E+02 0.0046 28.8 10.5 78 259-338 58-150 (475)
432 PF10274 ParcG: Parkin co-regu 46.0 91 0.002 26.9 6.8 74 178-253 37-111 (183)
433 PRK05978 hypothetical protein; 45.3 14 0.0003 30.7 1.7 14 48-61 52-65 (148)
434 PF14663 RasGEF_N_2: Rapamycin 44.9 1.5E+02 0.0032 23.3 7.5 40 222-262 9-48 (115)
435 PF09723 Zn-ribbon_8: Zinc rib 44.8 5.3 0.00012 25.2 -0.6 25 30-56 10-34 (42)
436 PF04388 Hamartin: Hamartin pr 44.1 2.2E+02 0.0048 30.1 10.7 59 192-251 81-140 (668)
437 PF08746 zf-RING-like: RING-li 44.0 32 0.0007 21.8 2.9 39 16-54 1-43 (43)
438 smart00834 CxxC_CXXC_SSSS Puta 43.9 13 0.00029 22.9 1.2 11 48-58 26-36 (41)
439 PF14663 RasGEF_N_2: Rapamycin 43.8 62 0.0014 25.5 5.2 41 261-303 6-46 (115)
440 PRK14559 putative protein seri 43.8 17 0.00037 37.9 2.5 35 14-61 2-40 (645)
441 PF11707 Npa1: Ribosome 60S bi 43.6 2.9E+02 0.0063 26.2 20.2 157 132-297 58-240 (330)
442 PRK06266 transcription initiat 42.3 24 0.00051 30.3 2.8 36 11-62 115-150 (178)
443 PRK04023 DNA polymerase II lar 41.9 23 0.0005 38.3 3.1 47 13-62 626-677 (1121)
444 KOG2932 E3 ubiquitin ligase in 41.9 8.6 0.00019 35.5 0.0 27 28-57 106-132 (389)
445 cd08050 TAF6 TATA Binding Prot 41.7 1E+02 0.0023 29.5 7.4 95 179-274 210-320 (343)
446 COG3492 Uncharacterized protei 40.9 13 0.00028 27.6 0.8 12 35-46 43-54 (104)
447 KOG1243 Protein kinase [Genera 40.9 4.5E+02 0.0099 27.6 12.9 185 177-381 328-515 (690)
448 PF06685 DUF1186: Protein of u 40.0 2.9E+02 0.0063 25.1 12.8 88 177-268 109-202 (249)
449 PF05883 Baculo_RING: Baculovi 39.0 31 0.00067 27.9 2.8 44 13-57 26-78 (134)
450 PF12874 zf-met: Zinc-finger o 38.5 11 0.00023 20.4 0.0 16 14-29 1-16 (25)
451 PF10497 zf-4CXXC_R1: Zinc-fin 38.4 31 0.00067 26.8 2.6 43 14-56 8-69 (105)
452 PF12773 DZR: Double zinc ribb 38.4 26 0.00057 22.7 2.0 11 49-59 30-40 (50)
453 COG1645 Uncharacterized Zn-fin 38.3 11 0.00025 30.3 0.2 10 46-55 42-51 (131)
454 PF06012 DUF908: Domain of Unk 38.2 1.8E+02 0.0038 27.7 8.3 66 194-259 237-305 (329)
455 PF12530 DUF3730: Protein of u 38.1 3E+02 0.0064 24.6 18.4 129 145-294 13-151 (234)
456 KOG1815 Predicted E3 ubiquitin 38.0 21 0.00045 35.6 2.0 35 11-45 68-103 (444)
457 PF12171 zf-C2H2_jaz: Zinc-fin 37.9 17 0.00036 20.2 0.8 17 14-30 2-18 (27)
458 KOG4231 Intracellular membrane 37.8 37 0.00081 33.9 3.6 173 117-302 234-407 (763)
459 KOG1832 HIV-1 Vpr-binding prot 37.7 3.5E+02 0.0076 29.5 10.5 156 198-362 328-491 (1516)
460 PF08506 Cse1: Cse1; InterPro 37.6 3.9E+02 0.0085 25.9 12.7 132 103-246 227-370 (370)
461 PF08389 Xpo1: Exportin 1-like 37.3 1.7E+02 0.0037 23.4 7.2 63 179-246 82-148 (148)
462 KOG2073 SAP family cell cycle 37.0 5.8E+02 0.013 27.7 13.4 180 175-365 186-379 (838)
463 PF03130 HEAT_PBS: PBS lyase H 37.0 44 0.00096 18.6 2.5 25 196-231 2-26 (27)
464 PF12783 Sec7_N: Guanine nucle 36.7 2.5E+02 0.0055 23.4 10.6 81 220-303 72-155 (168)
465 smart00734 ZnF_Rad18 Rad18-lik 36.5 16 0.00035 20.4 0.6 9 15-23 3-11 (26)
466 COG4338 Uncharacterized protei 36.4 14 0.0003 23.9 0.3 17 6-23 6-22 (54)
467 PF10915 DUF2709: Protein of u 35.8 34 0.00073 29.4 2.6 37 12-57 86-122 (238)
468 KOG2199 Signal transducing ada 35.6 1.7E+02 0.0036 28.5 7.3 73 308-381 46-118 (462)
469 KOG4185 Predicted E3 ubiquitin 35.6 6.5 0.00014 36.8 -1.9 43 14-56 208-264 (296)
470 TIGR02605 CxxC_CxxC_SSSS putat 35.3 13 0.00028 24.5 0.1 25 30-56 10-34 (52)
471 PF09162 Tap-RNA_bind: Tap, RN 34.9 24 0.00053 26.4 1.5 24 27-53 10-33 (88)
472 PF11640 TAN: Telomere-length 34.7 2.7E+02 0.0058 23.1 8.5 122 181-303 6-149 (155)
473 cd00197 VHS_ENTH_ANTH VHS, ENT 33.8 2.1E+02 0.0046 22.1 6.9 68 180-248 38-112 (115)
474 COG5656 SXM1 Importin, protein 33.4 2.7E+02 0.0057 29.7 8.8 121 130-258 408-535 (970)
475 PF12830 Nipped-B_C: Sister ch 33.3 3.1E+02 0.0068 23.5 10.0 118 223-350 10-134 (187)
476 PRK14892 putative transcriptio 33.3 20 0.00044 27.5 0.9 38 8-59 16-53 (99)
477 PF11791 Aconitase_B_N: Aconit 33.2 2.9E+02 0.0062 23.1 9.1 109 78-208 12-123 (154)
478 PRK09169 hypothetical protein; 33.1 9.9E+02 0.022 29.3 21.2 128 264-393 710-847 (2316)
479 PF11290 DUF3090: Protein of u 32.9 38 0.00083 28.6 2.5 17 45-61 151-167 (171)
480 PF07923 N1221: N1221-like pro 32.9 84 0.0018 29.3 5.1 54 179-233 60-128 (293)
481 KOG3579 Predicted E3 ubiquitin 32.9 24 0.00052 32.3 1.3 42 12-53 267-316 (352)
482 PRK11595 DNA utilization prote 32.9 39 0.00086 30.2 2.8 39 15-59 7-45 (227)
483 COG1885 Uncharacterized protei 32.7 14 0.00029 28.3 -0.2 21 47-67 48-68 (115)
484 PF14666 RICTOR_M: Rapamycin-i 31.4 3.8E+02 0.0083 23.9 13.0 128 194-335 79-224 (226)
485 PF14311 DUF4379: Domain of un 31.3 32 0.00069 23.0 1.5 23 30-54 33-55 (55)
486 PF13465 zf-H2C2_2: Zinc-finge 31.3 24 0.00051 19.5 0.7 13 12-24 13-25 (26)
487 KOG1078 Vesicle coat complex C 31.0 6.9E+02 0.015 26.8 19.2 72 130-210 241-313 (865)
488 TIGR03847 conserved hypothetic 30.7 44 0.00095 28.3 2.5 17 45-61 153-169 (177)
489 COG4049 Uncharacterized protei 30.6 13 0.00028 24.9 -0.5 17 10-26 14-30 (65)
490 COG1773 Rubredoxin [Energy pro 30.3 25 0.00055 23.7 0.8 14 8-21 31-44 (55)
491 cd00729 rubredoxin_SM Rubredox 30.1 29 0.00063 20.8 1.0 9 49-57 19-27 (34)
492 PF07923 N1221: N1221-like pro 30.0 1.2E+02 0.0025 28.4 5.5 53 220-273 59-126 (293)
493 COG5110 RPN1 26S proteasome re 29.9 6.3E+02 0.014 26.0 11.1 167 176-367 44-223 (881)
494 smart00567 EZ_HEAT E-Z type HE 29.3 99 0.0021 17.3 3.2 28 194-232 2-29 (30)
495 PF00412 LIM: LIM domain; Int 28.9 56 0.0012 21.6 2.4 32 12-43 25-57 (58)
496 KOG1087 Cytosolic sorting prot 28.9 1.7E+02 0.0036 29.4 6.6 70 179-249 38-110 (470)
497 PF12397 U3snoRNP10: U3 small 28.7 1.9E+02 0.0041 22.7 5.9 69 180-253 7-76 (121)
498 PF09324 DUF1981: Domain of un 28.5 1.6E+02 0.0036 21.7 5.1 68 220-291 16-85 (86)
499 TIGR00373 conserved hypothetic 28.4 65 0.0014 27.0 3.2 15 48-62 128-142 (158)
500 KOG4231 Intracellular membrane 28.3 1E+02 0.0022 31.0 4.9 68 181-249 330-397 (763)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3.3e-27 Score=256.84 Aligned_cols=285 Identities=15% Similarity=0.220 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
...+..++++|++...+.+.+..|+..|+.+++.+++||.++++.+|++|.|+.+|.+ .+ ..++++|+.+|.+++.+
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~--~~vk~nAaaaL~nLS~~ 88 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GT--LGAKVNAAAVLGVLCKE 88 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcC
Confidence 4568889999998744345889999999999999999999999866999999999987 44 45669999999999976
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC---chhHHHhhchhhHHHHHHHHhcccc--CHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD---NESKRRVLETENLLSALFDYLKLAE--DQAL 238 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~ 238 (398)
++ +|.. +...|+||.|+++|++++.+.|++|+.+|.+|+.+ ++++..++...|++|+|+.+|++++ +..+
T Consensus 89 e~----nk~~-Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L 163 (2102)
T PLN03200 89 ED----LRVK-VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVV 163 (2102)
T ss_pred HH----HHHH-HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHH
Confidence 44 4677 55799999999999999999999999999999987 4455455444899999999999872 2235
Q ss_pred HHHHHHHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHH
Q 015939 239 NDAILSILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l 316 (398)
++.++.+|++|+...+++.. ++++|+|+.|+++|+ ++++.+++.|+.+|.+++.+ ++.+..++ ++|+||.|+++|
T Consensus 164 ~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV~LL 240 (2102)
T PLN03200 164 EGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHH
Confidence 67788999999999998765 579999999999995 47899999999999888764 77899998 579999999999
Q ss_pred hcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcC--------cHHHHHHHHHHHHHHhc
Q 015939 317 MKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSEN--------EGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 317 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~--------~~~~k~~A~~lL~~l~~ 381 (398)
.++ ++.++++|+++|.+|+.++ .+.+..+++.|+++.|+.++++.. +...++.|.++|.++.+
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 864 5689999999999999854 789999999999999999997532 23469999999999887
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=208.69 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=239.5
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..|+.++.++..+ .+..++++|.+++.. +.||..++.. |++.+|.++-++ .+ ..++.+++.+|.+|...-+
T Consensus 129 ~~Li~qmmtd~ve--vqcnaVgCitnLaT~-d~nk~kiA~s-GaL~pltrLaks-kd--irvqrnatgaLlnmThs~E-- 199 (550)
T KOG4224|consen 129 DLLILQMMTDGVE--VQCNAVGCITNLATF-DSNKVKIARS-GALEPLTRLAKS-KD--IRVQRNATGALLNMTHSRE-- 199 (550)
T ss_pred HHHHHHhcCCCcE--EEeeehhhhhhhhcc-ccchhhhhhc-cchhhhHhhccc-ch--hhHHHHHHHHHHHhhhhhh--
Confidence 3456666655544 888999999999988 7899999999 999999996666 44 5677999999999986544
Q ss_pred HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh--HHHHHHHHhccccCHHHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN--LLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
||+. ++++|++|.||+++++++.++|.+++.+|.+++.+..+|..+++ .+ .++.||.++.++ +++++..|..+
T Consensus 200 --nRr~-LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~-s~kvkcqA~lA 274 (550)
T KOG4224|consen 200 --NRRV-LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDG-SDKVKCQAGLA 274 (550)
T ss_pred --hhhh-hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCC-ChHHHHHHHHH
Confidence 4776 89999999999999999999999999999999999999999987 56 999999999999 88999999999
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAR 324 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~ 324 (398)
|.+|+++.+.+..++++|++|.++++|++ +.....-....+++|++.+|-+---|. ++|.+.+||.+|.- .+.+.|
T Consensus 275 Lrnlasdt~Yq~eiv~ag~lP~lv~Llqs--~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiq 351 (550)
T KOG4224|consen 275 LRNLASDTEYQREIVEAGSLPLLVELLQS--PMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQ 351 (550)
T ss_pred HhhhcccchhhhHHHhcCCchHHHHHHhC--cchhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhh
Confidence 99999999999999999999999999964 666777788889999999998888888 68999999999987 456699
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
-+|+.+||+|+..+ +..+..+.++|+++++..++..+ ...+|..-..++..|+=
T Consensus 352 chAvstLrnLAass--e~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 352 CHAVSTLRNLAASS--EHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL 405 (550)
T ss_pred hhHHHHHHHHhhhh--hhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh
Confidence 99999999999865 68899999999999999999866 67888877777766653
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=1.2e-25 Score=244.87 Aligned_cols=278 Identities=12% Similarity=0.142 Sum_probs=238.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.|++.|.+++.+ .+..|++.|.+++.+++.++..++++ |++|.|+.+|.+ ++ .+++++|+++|.|++.+++
T Consensus 447 gIp~LV~LL~s~s~~--iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s-~~--~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 447 GVQLLISLLGLSSEQ--QQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLET-GS--QKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred cHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhCCcH
Confidence 578899999987654 88899999999999989999999999 999999999988 44 4567999999999998644
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH--------------------------------
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK-------------------------------- 213 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------------------------------- 213 (398)
+ .+.++.+.|+++.|+++|++++.+.++.|+++|.+|+.+.+..
T Consensus 521 q----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 521 D----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred H----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 3 4554668899999999999999999999999999996432111
Q ss_pred -----HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939 214 -----RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIK 287 (398)
Q Consensus 214 -----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~ 287 (398)
.......|+++.|+++|+++ +++.++.|+++|.+++.+ .+++..++..|+|++|+.+|+ +.+.++++.+++
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs--s~~~~v~keAA~ 673 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT--NNTEAVATQSAR 673 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh--cCChHHHHHHHH
Confidence 11111368999999999999 889999999999999865 467888999999999999995 478889999999
Q ss_pred HHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc
Q 015939 288 MLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE 365 (398)
Q Consensus 288 ~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~ 365 (398)
+|.+|+. .++++..++ +.|+|+.|++++...+..+.+.|+.+|.+++.. .+.+..+.+.|+++.|+.+|+++ +
T Consensus 674 AL~nL~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv~lLr~G-~ 748 (2102)
T PLN03200 674 ALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD---PEVAAEALAEDIILPLTRVLREG-T 748 (2102)
T ss_pred HHHHHHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHHHHHHhC-C
Confidence 9999995 445566677 579999999999999999999999999999985 57888899999999999999988 8
Q ss_pred HHHHHHHHHHHHHHhc
Q 015939 366 GIVRKMCGDLVKVLGK 381 (398)
Q Consensus 366 ~~~k~~A~~lL~~l~~ 381 (398)
++.|++|+++|..|.+
T Consensus 749 ~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 749 LEGKRNAARALAQLLK 764 (2102)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 9999999998877776
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-25 Score=213.72 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++.++.-|+..+. ...+.+|+++|.+++++..+.-..++++ |++|.++.+|.+ + +..+.++|+++|.|++.+
T Consensus 108 ~G~v~~lV~~l~~~~~-~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s-~--~~~v~eQavWALgNIagd 182 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDN-PTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSS-P--SADVREQAVWALGNIAGD 182 (514)
T ss_pred cCcHHHHHHHHccCCC-hhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcC-C--cHHHHHHHHHHHhccccC
Confidence 3457888988875543 2478999999999999999999999999 999999999998 3 456779999999999998
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
++.. |.. +.+.|+++.|+.++...+. ....+++|+|.+|+.+.+-...+.....++|.|..+|.+. |+++...|
T Consensus 183 s~~~---Rd~-vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da 257 (514)
T KOG0166|consen 183 SPDC---RDY-VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDA 257 (514)
T ss_pred ChHH---HHH-HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 7764 666 7799999999999998754 7788999999999999655555554478999999999999 99999999
Q ss_pred HHHHHHhcCCcchHHHH-HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cC
Q 015939 243 LSILITLSVYRSVKAQL-VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VG 320 (398)
Q Consensus 243 ~~aL~~Ls~~~~~~~~~-v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~ 320 (398)
+|+|.+|+.+...+..+ ++.|+++.|+.+|. +.++.++--|+.++.|++.+.+...+.+-+.|+++.|..++.. ..
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~--~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~ 335 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG--HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK 335 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHc--CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence 99999999777655555 49999999999995 4788889999999999988776666655578999999999984 56
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
...++.|++++.|++.+ +.+.+..++.+|.+|.|+.+|+++ +.++|+.|++++.++.-
T Consensus 336 ~~ikkEAcW~iSNItAG--~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 336 ESIKKEACWTISNITAG--NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhHHHHHHHHHHHhhcC--CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 66899999999999984 488999999999999999999988 68999999999998876
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.3e-24 Score=206.26 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
...++.++..+.+++.+ .+.+|+++|.+++.+++..|+.+.+. |++++|+.++.. .+. ...+.+++++|.|||.+
T Consensus 151 agavp~fi~Ll~s~~~~--v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~-~~~-~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSAD--VREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNK-SDK-LSMLRNATWTLSNLCRG 225 (514)
T ss_pred CCchHHHHHHhcCCcHH--HHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhcc-ccc-hHHHHHHHHHHHHHHcC
Confidence 45577889999988876 89999999999999999999999999 999999999987 443 35679999999999998
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
....+.. -.-..++|.|..+|++.|.++...|+|+|.+|+.+..-+..++-..|+++.|+.+|.+. ++.++..|+
T Consensus 226 k~P~P~~----~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaL 300 (514)
T KOG0166|consen 226 KNPSPPF----DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPAL 300 (514)
T ss_pred CCCCCcH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHH
Confidence 7543221 11346799999999999999999999999999988655555554589999999999999 788999999
Q ss_pred HHHHHhcCCcchHHHH-HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939 244 SILITLSVYRSVKAQL-VELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK 321 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~-v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~ 321 (398)
+++.|+..+.+..... ++.|+++.|..+++. +....+++.|++++.|++. +.+..++++ ++|.+|.|+.+|.+++-
T Consensus 301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~-s~~~~ikkEAcW~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef 378 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSS-SPKESIKKEACWTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEF 378 (514)
T ss_pred hhccceeeccHHHHHHHHhcChHHHHHHHhcc-CcchhHHHHHHHHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccch
Confidence 9999999877766665 599999999999963 4556688999999999977 566778888 68999999999999999
Q ss_pred hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.|+.|++++.|++.. ++++....+++.|+|+.+..+|... +.++-..+...|..+-+
T Consensus 379 ~~rKEAawaIsN~ts~-g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 379 DIRKEAAWAISNLTSS-GTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILK 436 (514)
T ss_pred HHHHHHHHHHHhhccc-CCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHH
Confidence 9999999999999986 5689999999999999999999555 66667777777776655
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=197.37 Aligned_cols=274 Identities=16% Similarity=0.184 Sum_probs=238.5
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..+.+.-++.+.- .+..+...|.++.+. .+||+.++.+ |++|.|++++++ ++.+ ++..+..++.+++.+...
T Consensus 170 ~pltrLakskdir--vqrnatgaLlnmThs-~EnRr~LV~a-G~lpvLVsll~s-~d~d--vqyycttaisnIaVd~~~- 241 (550)
T KOG4224|consen 170 EPLTRLAKSKDIR--VQRNATGALLNMTHS-RENRRVLVHA-GGLPVLVSLLKS-GDLD--VQYYCTTAISNIAVDRRA- 241 (550)
T ss_pred hhhHhhcccchhh--HHHHHHHHHHHhhhh-hhhhhhhhcc-CCchhhhhhhcc-CChh--HHHHHHHHhhhhhhhHHH-
Confidence 3344433333333 778899999999855 7899999999 999999999999 6655 559999999999976543
Q ss_pred HHhhHhhhccCC--ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 168 EKLNRLILNTYN--CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 168 ~~~~~~il~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
|+. ++..+ .++.|+++++.+++.++..|..+|++|+.+.++...|++ .|.+|.++++|+++ .....-+...+
T Consensus 242 ---Rk~-Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~-~~plilasVaC 315 (550)
T KOG4224|consen 242 ---RKI-LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSP-MGPLILASVAC 315 (550)
T ss_pred ---HHH-HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCc-chhHHHHHHHH
Confidence 555 77666 999999999999999999999999999999999999998 89999999999998 66688888999
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAR 324 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~ 324 (398)
+.|++..+-|-..++++|-+.+|+++|+. .++.+++-.|..+|++|+. .+.++..|.+ .|+||.+.+++.++.-.+|
T Consensus 316 IrnisihplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HhhcccccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHH
Confidence 99999999999999999999999999973 3466799999999999998 6678888884 6999999999999999999
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.-..++..|+.. +..+..+.+.|.++.|+....+. +.+++.+|+.+|-+|+.
T Consensus 394 seisac~a~Lal~---d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 394 SEISACIAQLALN---DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHHHHHhc---cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence 9999999999985 56788899999999999988877 89999999999999987
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.5e-23 Score=186.85 Aligned_cols=285 Identities=12% Similarity=0.150 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++.++..|.+++.+ .+.+++++|.+++.+++..|+.+.+. |++++|+.+|.+ +..+...+.++.++|.||+.+
T Consensus 156 ~~AVPlfiqlL~s~~~~--V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~s-s~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 156 AGAVPLFIQLLSSTEDD--VREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLS-SAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred CCchHHHHHHHcCchHH--HHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHh-ccchHHHHHHhHHHHHHhhCC
Confidence 45688999999988775 88999999999999999999999999 999999999998 666778899999999999986
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
....+. ... -..++|.|.+++.+.++++...|+|+|..|+..+.-+...+-+.|..+.|+.+|.++ +..++..++
T Consensus 232 knP~P~-w~~---isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPal 306 (526)
T COG5064 232 KNPPPD-WSN---ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPAL 306 (526)
T ss_pred CCCCCc-hHH---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHH
Confidence 543211 111 134689999999999999999999999999999776666665589999999999998 888999999
Q ss_pred HHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939 244 SILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK 321 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~ 321 (398)
+.+.|+..+.+.+.+ ++++|+++++-.+|+ +....++..|++++.|+.. +.+..+++. ++..+|.|+.+|...+-
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~ 383 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEY 383 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHH
Confidence 999999877665555 559999999999995 4677999999999999976 556777777 68999999999999999
Q ss_pred hHHHHHHHHHHHhhccC-CChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 322 TAREDAVVVIWSMCCVY-KDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.++.|++++.|.+.+. +-++....++..|++..|..+|... +.++-+.|...+...-+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~eniLk 443 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHHHHHh
Confidence 99999999999987654 3467888999999999999999876 45666777766665444
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=4.5e-22 Score=178.87 Aligned_cols=284 Identities=15% Similarity=0.137 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhc
Q 015939 84 EQEVRVWIEKIKSE-NESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVN 162 (398)
Q Consensus 84 ~~~i~~l~~~l~~~-~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~ 162 (398)
.+-++++++.|.+. ... -+.+|.++|.+++++...--..++++ |+||.++.+|.+ +. ..++++++++|.|++.
T Consensus 113 aGvVpRfvefm~~~q~~m--lqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s-~~--~~V~eQavWALGNiAG 186 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDM--LQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSS-TE--DDVREQAVWALGNIAG 186 (526)
T ss_pred ccccHHHHHHHHhcchhH--HHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcC-ch--HHHHHHHHHHhccccC
Confidence 45578888888543 222 46789999999999877666788889 999999999998 33 4577999999999998
Q ss_pred ccchHHHhhHhhhccCCChHHHHHHHhcCC--hhhHHHHHHHHHHhhcCch---hHHHhhchhhHHHHHHHHhccccCHH
Q 015939 163 ENGVKEKLNRLILNTYNCLPLFLEILREGN--LDSKIGSIKILDSISLDNE---SKRRVLETENLLSALFDYLKLAEDQA 237 (398)
Q Consensus 163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~ 237 (398)
+++.+ |.+ +...|++..++.+|.++- .....++.|+|.+|+.... .-..+ ..++|.|.+|+-+. |++
T Consensus 187 DS~~~---RD~-vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~-D~e 258 (526)
T COG5064 187 DSEGC---RDY-VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR-DPE 258 (526)
T ss_pred CchhH---HHH-HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc-CHH
Confidence 87764 666 668999999999998773 4778899999999998732 22233 46799999999998 999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939 238 LNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
+...|+|+|..|+..+..+..++ +.|..+.|+++|+ +++..++.-|+..+.|+....+.+..+.-+.|+++.+-.+|
T Consensus 259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs--~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS--HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc--CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence 99999999999998877666655 9999999999995 47889999999999999887777766655789999999999
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCCC
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGN 387 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~~ 387 (398)
.+.....++.|++.+.|++.. +.+..+.++++..+|.|+.+|.+. +-.+|+.|++++.+... +|...
T Consensus 337 s~~ke~irKEaCWTiSNITAG--nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNats-gg~~~ 403 (526)
T COG5064 337 SSPKENIRKEACWTISNITAG--NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATS-GGLNR 403 (526)
T ss_pred cChhhhhhhhhheeecccccC--CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhc-cccCC
Confidence 988889999999999999984 478899999999999999999877 78899999988877665 44443
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.86 E-value=2.1e-22 Score=146.89 Aligned_cols=71 Identities=41% Similarity=0.755 Sum_probs=61.8
Q ss_pred CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
+|++|+||||+++|+|||++++||||||.+|++|+.++..+||.|++++...++.||..|+..|+.|+.++
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999887889999999999999999999999999998654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=5.9e-18 Score=171.65 Aligned_cols=216 Identities=18% Similarity=0.287 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939 147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSAL 226 (398)
Q Consensus 147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L 226 (398)
.+++..++..|.|++.+... +.. +.+.|+++.|+++|++++.+....++.+|..|+...+|+..+++ .|+++.|
T Consensus 263 eqLlrv~~~lLlNLAed~~v----e~k-M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL 336 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRV----ELK-MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHhcChHH----HHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHH
Confidence 36778889999999987765 455 77999999999999999999999999999999999999999998 8999999
Q ss_pred HHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939 227 FDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA 306 (398)
Q Consensus 227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~ 306 (398)
++++.++ +.+++..++++|+|||.+.+.|..|++.|.||.|+.+|. ++.....++.+|.+|+..+++|..+. ..
T Consensus 337 ~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~----d~~~~~val~iLy~LS~dd~~r~~f~-~T 410 (708)
T PF05804_consen 337 LKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK----DPNFREVALKILYNLSMDDEARSMFA-YT 410 (708)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC----CCchHHHHHHHHHHhccCHhhHHHHh-hc
Confidence 9999998 888999999999999999999999999999999999995 35566789999999999999999888 45
Q ss_pred CcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 307 SCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 307 g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++++.+++++.. +++.++..++.++.|++.. +++.+.+.+.|+++.|+.......++- ..+++++++.
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~---~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~ 479 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALN---KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQ 479 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcC---HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHh
Confidence 899999999876 5566677788889999975 678889999999999997775543222 2346666666
No 11
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4.6e-17 Score=146.56 Aligned_cols=210 Identities=14% Similarity=0.214 Sum_probs=179.8
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCc----------hhHHHhhchhhHHHHHHHHhccccC
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDN----------ESKRRVLETENLLSALFDYLKLAED 235 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~----------~~~~~i~~~~g~i~~Lv~lL~~~~~ 235 (398)
||.||.. +++.++++.+.+.|... ...+...+.++++.|..++ +....|.. .|++..|+..|+..-+
T Consensus 178 hE~nrQ~-~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 178 HEVNRQL-FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGID 255 (461)
T ss_pred hHHHHHH-HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCC
Confidence 6778888 78999999999777644 4457778999999888776 44566666 6789999999998878
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc--chhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHH
Q 015939 236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT--QILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVV 313 (398)
Q Consensus 236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~--~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv 313 (398)
|+....+..+|..|+..++.++.+++.|+++.|++++.+.+. .......++.+|+.|++++.++..|++ .|+.+.++
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii 334 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKII 334 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHH
Confidence 999999999999999999999999999999999999975222 224678999999999999999999995 69999999
Q ss_pred HHHhc--cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939 314 ERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK 381 (398)
Q Consensus 314 ~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~ 381 (398)
.++.+ .+|.+-+.++.++.-||..+ ++....+++.|+-...++.|+...- ..++++|+++++++-.
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~--pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRS--PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcC--cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 99976 78999999999999999876 6788899999999999999987632 2589999999999876
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=9.3e-17 Score=144.64 Aligned_cols=285 Identities=19% Similarity=0.274 Sum_probs=231.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
....+++.|....++.+.....+..++.-|..++.||+.+++. |+.+.+...|...+ ..++.+...+++..|..+++
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDD 222 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREG--KTRTVRELYDAIRALLTDDD 222 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCc
Confidence 3445666665444433466777888999999999999999999 99999998887622 23567888889988888776
Q ss_pred hH------HHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH--
Q 015939 166 VK------EKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ-- 236 (398)
Q Consensus 166 ~~------~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-- 236 (398)
-. ...-+. ++..|++..|++.|..+ ++.+...++.+|..|+..++.+..|.+ .|+++.|++++.+..+.
T Consensus 223 iRV~fg~ah~hAr~-ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~ 300 (461)
T KOG4199|consen 223 IRVVFGQAHGHART-IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGN 300 (461)
T ss_pred eeeecchhhHHHHH-HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhH
Confidence 31 111223 66778999999999988 899999999999999999999999998 89999999999985222
Q ss_pred -HHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHH
Q 015939 237 -ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVE 314 (398)
Q Consensus 237 -~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~ 314 (398)
.+.+.++..|..|+.+++++..+|+.|+.+.++.++....++|.+.+.++.++.-|+- .|++-..+. ++|+-...|+
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i-e~G~a~~avq 379 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI-EAGAADLAVQ 379 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH-hcchHHHHHH
Confidence 3567899999999999999999999999999999997677899999999999999986 788888888 4799999999
Q ss_pred HHhc--cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 315 RVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 315 ~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
.|+. ....+|++|+..+.||...+ .+.+..++.. ++++|+..-... .+..+.-|...|+-|.
T Consensus 380 AmkahP~~a~vQrnac~~IRNiv~rs--~~~~~~~l~~-GiE~Li~~A~~~-h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 380 AMKAHPVAAQVQRNACNMIRNIVVRS--AENRTILLAN-GIEKLIRTAKAN-HETCEAAAKAALRDLG 443 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHhh--hhccchHHhc-cHHHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence 9987 46678999999999999875 5666666655 567788777666 6777777777887664
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=2.2e-16 Score=160.31 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=213.3
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
-++.|++.|.+.+.+ ....++.-|.+++-. .+|+..|.+. |+++.|+.++.+ .+ ..++..++++|.||+.+.+
T Consensus 291 iV~~Lv~~Ldr~n~e--llil~v~fLkkLSi~-~ENK~~m~~~-giV~kL~kLl~s-~~--~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 291 IVSLLVKCLDRENEE--LLILAVTFLKKLSIF-KENKDEMAES-GIVEKLLKLLPS-EN--EDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred CHHHHHHHHcCCCHH--HHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHhcC-CC--HHHHHHHHHHHHHhCcCHH
Confidence 466788888776543 677788889998855 6689999999 999999999998 43 4577999999999999776
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
. |.. +++.|++|.|+.+|..+ ..+..+..+|.+|+.++++|..+.. .++++.|+++|-+..++.+...++.+
T Consensus 364 ~----R~~-mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL 435 (708)
T PF05804_consen 364 L----RSQ-MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIAL 435 (708)
T ss_pred H----HHH-HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHH
Confidence 5 676 88999999999999864 4667799999999999999999987 68999999987766466677788999
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcc------------------------------------cCcchhhHHHHHHHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSD------------------------------------SRTQILTVEKSIKML 289 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~------------------------------------~~~~~~~~~~al~~L 289 (398)
+.||+.+..|.+.|.+.|+++.|++.... ...+++..-.++++|
T Consensus 436 ~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiL 515 (708)
T PF05804_consen 436 LINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGIL 515 (708)
T ss_pred HHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 99999999999988888888776653210 123667778899999
Q ss_pred HHHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 290 SIVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
.||...+..-..++.+.+.+|-|.+.|..+ .+...-.++.++..++.. +++...+.+.|.++.|+.+|+..
T Consensus 516 aNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~~~A~lL~~sgli~~Li~LL~~k 588 (708)
T PF05804_consen 516 ANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---PECAPLLAKSGLIPTLIELLNAK 588 (708)
T ss_pred HhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---HHHHHHHHhCChHHHHHHHHHhh
Confidence 999986666677776679999999999864 456777888888888863 78999999999999999999654
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.74 E-value=1.6e-18 Score=123.40 Aligned_cols=63 Identities=51% Similarity=0.892 Sum_probs=59.8
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHH
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW 76 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 76 (398)
+|.||||+++|+|||+++|||+|||+||.+|+.+ ..+||.|++++...++++|..+++.|+.|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999976 67899999999999999999999999987
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.65 E-value=6.3e-15 Score=146.73 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=224.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
++++.+.+|.+.... .+..|..-|+.+|.++.+.+..+.+. |+|+.|+.+|++ . ..+++.+|+++|.||.....
T Consensus 234 ~lpe~i~mL~~q~~~--~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~-~--~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPS--VQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDH-R--NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccHHHHHHHhccChh--hhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcC-C--cHHHHHHHHHHHHhhhcccC
Confidence 466778888877765 77888889999999999999999999 999999999998 3 34677999999999998765
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc----------
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE---------- 234 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---------- 234 (398)
+. .||-. +.+.++|+.++++|+. +|.++++..+.+|+||++.|..|..+.. .++..|.+-+-.+.
T Consensus 308 ~~-~NKla-i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 308 TD-SNKLA-IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred Cc-ccchh-hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccc
Confidence 41 24555 7789999999999997 5999999999999999999888888865 56777776554321
Q ss_pred ---CHHHHHHHHHHHHHhcC-CcchHHHHH-HcCChHHHHHHhc----ccCcchhhHHHHHHHHHHHhCCHH------H-
Q 015939 235 ---DQALNDAILSILITLSV-YRSVKAQLV-ELGMVQILTRILS----DSRTQILTVEKSIKMLSIVATCSE------G- 298 (398)
Q Consensus 235 ---~~~~~~~a~~aL~~Ls~-~~~~~~~~v-~~g~v~~Lv~lL~----~~~~~~~~~~~al~~L~~La~~~~------~- 298 (398)
+..+..++..+|.|+++ +.+.+++|- ..|.|+.|+-.++ ....|...+++|+.+|+||+-.-+ .
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence 24677899999999987 677899987 5799999998886 234678899999999999985221 0
Q ss_pred -------------------------HHH----------------------HhhccCcHHHHHHHHh-ccChhHHHHHHHH
Q 015939 299 -------------------------RLA----------------------LSEEASCAGRVVERVM-KVGKTAREDAVVV 330 (398)
Q Consensus 299 -------------------------~~~----------------------i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~ 330 (398)
++. .. +.-+|.....+|. ..++.+.|.++++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw-~p~vVr~Yl~Ll~~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLW-HPSVVRPYLLLLALSKNDNTLEASAGA 542 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeee-cHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence 001 00 1123444455554 3688999999999
Q ss_pred HHHhhccCC--ChhHHHHH-HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 331 IWSMCCVYK--DARVKEAV-VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 331 L~~l~~~~~--~~~~~~~~-~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|.|++.+.. ....+..+ .++.+++.|+.+|+.+ ++.+.+.++.+|++|+.
T Consensus 543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSR 595 (717)
T ss_pred HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhcc
Confidence 999998753 13355555 7899999999999988 78888999999999988
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.64 E-value=9.4e-15 Score=151.40 Aligned_cols=268 Identities=16% Similarity=0.176 Sum_probs=216.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhh--c--c----C-CcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939 106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNR--K--R----R-SEIAVLESAVRVLNLIVNENGVKEKLNRLILN 176 (398)
Q Consensus 106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~--~--~----~-~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~ 176 (398)
.|+..|-++. .++++|..+-++ |++.++.+||.- . . + ....++..|..+|.||.+++.. ||...-.
T Consensus 317 aA~~~lMK~S-FDEEhR~aM~EL-G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~---NKa~LCs 391 (2195)
T KOG2122|consen 317 AALCTLMKLS-FDEEHRHAMNEL-GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA---NKATLCS 391 (2195)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc---chhhhhh
Confidence 6777777776 569999999999 999999998832 1 1 1 1235668899999999998776 5776455
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCC-c
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDY-LKLAEDQALNDAILSILITLSVY-R 253 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~-~ 253 (398)
..|+|..+|..|.+...++.+--+.+|+||+=. +.+-..+....|-+..|+.. |++. ....+++.+.|||||+.+ .
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhccc
Confidence 779999999999999999999999999999966 55555555558988998875 4554 667899999999999864 5
Q ss_pred chHHHHH-HcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 254 SVKAQLV-ELGMVQILTRILSD--SRTQILTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 254 ~~~~~~v-~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
+||..|. --|++..|+.+|.- ++..-.+++.+-++|+|.+. ++..|+-+. ...++..|+..|++.+-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR-~~NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR-RHNCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH-HhhHHHHHHHHhhhcceEEeec
Confidence 7999998 47999999999962 23455899999999999766 555666666 5599999999999999999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKAS 383 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~ 383 (398)
+++.||||...+ ++-.+.+.+.|+++.|..++.+. ...+-+-++..|++|=.+.
T Consensus 550 aCGTLWNLSAR~--p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 550 ACGTLWNLSARS--PEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred chhhhhhhhcCC--HHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 999999999854 67788899999999999999877 5666666777777766643
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=4.3e-14 Score=127.95 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=173.6
Q ss_pred ccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc
Q 015939 176 NTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS 254 (398)
Q Consensus 176 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 254 (398)
-+++-++.|+.+|+.. ++.+++.+..++.+.+..+.++..+.+ .|+++.+..+|.++ ++.++..|+.+|.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 4677899999999966 899999999999999999999999998 89999999999999 99999999999999999999
Q ss_pred hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHh
Q 015939 255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSM 334 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l 334 (398)
|+..+-. .++.+.+.+.+...+..++..++.+|.+|+..++.+..+. +.++.++.++..|+..++.+++++|.+|
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9987744 5788887665445578899999999999998877766665 4799999999999999999999999999
Q ss_pred hccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 335 CCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.+ +.....++.++++..++.+++.+.+...-..+..+..++++
T Consensus 162 S~n---p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SEN---PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccC---HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 975 78888999999999999999988777888888888888876
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=5.6e-13 Score=120.74 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=163.9
Q ss_pred hhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHH
Q 015939 126 ASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDS 205 (398)
Q Consensus 126 ~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 205 (398)
.+. +-++.|+.+|+.+.++. +++.++.++.+.+..+.. +.. +.+.|+++.+..+|+.+++.++..|+++|.+
T Consensus 9 l~~-~~l~~Ll~lL~~t~dp~--i~e~al~al~n~aaf~~n----q~~-Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 9 LEA-QELQKLLCLLESTEDPF--IQEKALIALGNSAAFPFN----QDI-IRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred cCH-HHHHHHHHHHhcCCChH--HHHHHHHHHHhhccChhH----HHH-HHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 445 77899999999744544 559999999998876654 344 8899999999999999999999999999999
Q ss_pred hhcCchhHHHhhchhhHHHHHHHHhcc-ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939 206 ISLDNESKRRVLETENLLSALFDYLKL-AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEK 284 (398)
Q Consensus 206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~ 284 (398)
++.+.+++..|-. .++.+++...+ +-+.+++.+++++|.+|+..++....+.. .++.++++|. .++..++..
T Consensus 81 ls~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~--~G~~~~k~~ 153 (254)
T PF04826_consen 81 LSVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS--SGSEKTKVQ 153 (254)
T ss_pred cCCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH--cCChHHHHH
Confidence 9999999998843 46666665443 33567999999999999998888766644 7999999995 478899999
Q ss_pred HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccC
Q 015939 285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~ 338 (398)
++++|.||+.++.....+. .+.++..++.++.+ .+...-..++.+..||..+-
T Consensus 154 vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9999999999999988888 46899999999987 47777899999999996543
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.51 E-value=2.4e-13 Score=135.53 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=165.4
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--
Q 015939 132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-- 209 (398)
Q Consensus 132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-- 209 (398)
++-.+.+|.+ .+.. ++-+|..-|..++..+.. .|.. +..-|+|++||.+|++.+.+++.+|+++|+||...
T Consensus 235 lpe~i~mL~~-q~~~--~qsnaaaylQHlcfgd~~---ik~~-vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 235 LPEVISMLMS-QDPS--VQSNAAAYLQHLCFGDNK---IKSR-VRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred cHHHHHHHhc-cChh--hhHHHHHHHHHHHhhhHH---HHHH-HHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC
Confidence 5666788887 5544 448899999999987665 4565 66889999999999999999999999999999876
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc-----------
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT----------- 277 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~----------- 277 (398)
++|+..|.. .++|+.|+++|+...|.++++....+||||++++..+..+++. ++..|..-+-.+.+
T Consensus 308 ~~~NKlai~~-~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 308 TDSNKLAIKE-LNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred Ccccchhhhh-cCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence 358889888 8999999999998658899999999999999997787777765 67777765532221
Q ss_pred -chhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc------cChhHHHHHHHHHHHhhcc
Q 015939 278 -QILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK------VGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 278 -~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~------~~~~~~~~a~~~L~~l~~~ 337 (398)
+..+..++.++|+|+++ ..+.|+++.+..|.|..|+..++. .+.+..|+++.+|.|+...
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr 453 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR 453 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence 36788899999999988 889999999999999999999984 5888899999999998764
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.49 E-value=1.6e-14 Score=92.68 Aligned_cols=39 Identities=38% Similarity=0.739 Sum_probs=30.9
Q ss_pred ccCccccCCCceecCCCcccchhHHHHHHhcCC---CCCCcc
Q 015939 16 CPISLDVMKSPVSLCTGVTYDRSSIQHWLESGH---DTCPAT 54 (398)
Q Consensus 16 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~---~~CP~~ 54 (398)
||||.++|+|||+++|||+||+.||++||++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999996432 469986
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=5.8e-11 Score=119.09 Aligned_cols=284 Identities=15% Similarity=0.172 Sum_probs=217.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
-.+.+.+-|.+++.. .+.-+++.|.++..++......+.+. +.++.++.+|.+ . +..+.+.|..+|..++....
T Consensus 78 ~~~~L~~gL~h~~~~--Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~-~--d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPK--VRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRD-P--DLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcC-C--cHHHHHHHHHHHHHHhCCch
Confidence 345566677777664 78888999999988777767777777 999999999987 4 45677999999999998665
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
. -.. +.+.+.+..|..++...+..+|.++..++..++.. ++....+.. .|+++.+++.|++. |.-++.+++.
T Consensus 152 ~----~~~-l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~d-DiLvqlnale 224 (503)
T PF10508_consen 152 G----LEQ-LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSD-DILVQLNALE 224 (503)
T ss_pred h----HHH-HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCc-cHHHHHHHHH
Confidence 4 233 55777899999999988889999999999999876 566666666 89999999999996 8889999999
Q ss_pred HHHHhcCCcchHHHHHHcCChHHHHHHhccc---------------------------------------------Ccch
Q 015939 245 ILITLSVYRSVKAQLVELGMVQILTRILSDS---------------------------------------------RTQI 279 (398)
Q Consensus 245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~---------------------------------------------~~~~ 279 (398)
+|..|+..+.+...+.+.|+++.|..++.+. +.|+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~ 304 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDP 304 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999888999999999999999988542 2344
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHH-hhccCcHHHHHHHHh----ccChhHHHHHHHHHHHhhccCCC---hh---HHHH--
Q 015939 280 LTVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVM----KVGKTAREDAVVVIWSMCCVYKD---AR---VKEA-- 346 (398)
Q Consensus 280 ~~~~~al~~L~~La~~~~~~~~i-~~~~g~v~~Lv~~l~----~~~~~~~~~a~~~L~~l~~~~~~---~~---~~~~-- 346 (398)
..+..|+.+|..++...+|+..+ ....+.+..+++.+. ++....+..++.+|.++-....+ ++ ..+.
T Consensus 305 ~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~ 384 (503)
T PF10508_consen 305 TIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWY 384 (503)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44477899999999999999999 544456666665554 36677899999999998543221 11 1111
Q ss_pred -HHhcCCHH-HHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939 347 -VVNSNGLT-KLLLVMQSENEGIVRKMCGDLVKVLGKAS 383 (398)
Q Consensus 347 -~~~~g~~~-~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~ 383 (398)
....+-.. .++.+++.. =+.+|-.|-.+|+.+..++
T Consensus 385 ~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCH
Confidence 12233344 455555543 4799999999999998854
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=2.1e-11 Score=97.99 Aligned_cols=115 Identities=20% Similarity=0.212 Sum_probs=102.1
Q ss_pred hhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 216 VLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 216 i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
+.+ .|+++.|+++|.++ +++.+..++.+|.+++.+ ++.+..+++.|+++.++++|.+ .++.++..++++|.+|+.
T Consensus 3 ~~~-~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 3 VIQ-AGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAA 78 (120)
T ss_pred HHH-cCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHcc
Confidence 344 78999999999998 789999999999999987 6788888899999999999954 689999999999999999
Q ss_pred CHHHH-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 295 CSEGR-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 295 ~~~~~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
.+... ..+. ..|+++.+++++...+..+++.|+.+|.+|+
T Consensus 79 ~~~~~~~~~~-~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVL-EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHH-HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77544 4455 6799999999999999999999999999987
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.33 E-value=3.9e-10 Score=105.34 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=202.6
Q ss_pred HhhhhhhhhhhhhhcCCcHHHHHHHhhhccC-C----cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHH
Q 015939 114 FATGCEANRRFLASYGGFVEAVFGVLNRKRR-S----EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL 188 (398)
Q Consensus 114 l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~-~----~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL 188 (398)
-..+++..+-.+++. |.++.++.+++.-.+ . .......+......+..+++. -.+....+.++..+++.+
T Consensus 250 ~~aend~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS----Mq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 250 KAAENDLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES----MQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHhcCcceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH----HHHHhcCcHHHHHHHHHh
Confidence 334667788889999 999999999976211 1 122233444445555555553 233233445899999999
Q ss_pred hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcchHHHHHHcCC
Q 015939 189 REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRSVKAQLVELGM 264 (398)
Q Consensus 189 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~ 264 (398)
++++......++.+|.|+++.++++..+++ .|.+..|+.+|... .+.+.+.+++.+|+||..-..|+..+..+|.
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv 403 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV 403 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence 999999999999999999999999999998 89999999998642 3678899999999999999999999999999
Q ss_pred hHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhhccCcHHHHHHHHhccChh-HHHHHHHHHHHhhccCCChh
Q 015939 265 VQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSEEASCAGRVVERVMKVGKT-AREDAVVVIWSMCCVYKDAR 342 (398)
Q Consensus 265 v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~ 342 (398)
+.+++.++. ...|+++.+-+++|+.+-...+ ...++..+.-.+..||.+-++.+-. +.-..-+.|..+-+++...+
T Consensus 404 teaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 404 TEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred HHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 999999995 4789999999999999887655 6667776777788888888775443 66677888888888765457
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 343 VKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 343 ~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+...+.+.|++..++..+-.+ .-..+..|.-.|-.++.
T Consensus 482 v~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 482 VILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTES 519 (604)
T ss_pred hHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHH
Confidence 788889999999999888665 56677777665555544
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.33 E-value=8.9e-13 Score=111.61 Aligned_cols=62 Identities=24% Similarity=0.428 Sum_probs=52.7
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc---------------CCCCCCcccccCCCCCCcccHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES---------------GHDTCPATMQILSTKEFVPNLTL 69 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~~l 69 (398)
.+...+|.||||.+.++|||+++|||.||+.||.+|+.. +...||.|+.++...+++|...-
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 356678999999999999999999999999999999742 23579999999998888887533
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=3.5e-11 Score=96.70 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=104.2
Q ss_pred hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
+.+.|+++.++++|++++.+.+..++.+|.+++.+ ++....+.. .|+++.|+.+|.++ ++.++..++++|++|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 44679999999999999999999999999999998 778888877 79999999999998 8999999999999999877
Q ss_pred c-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 254 S-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 254 ~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
. ....+++.|+++.|++++.+ .+..+++.++++|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhhC
Confidence 4 56667799999999999954 688999999999999873
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=2.5e-12 Score=122.08 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=64.4
Q ss_pred ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
...+..+|.||||.++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..+..+++.|..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999975 4589999999988889999999999999964
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=9.1e-10 Score=110.53 Aligned_cols=250 Identities=14% Similarity=0.139 Sum_probs=194.5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..+++.|.... .+.+++..+.......+... . ...+.+...|.+ .+ .+..+.++.+|..+......
T Consensus 5 ~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~l~-~-----~~~~~lf~~L~~-~~--~e~v~~~~~iL~~~l~~~~~ 71 (503)
T PF10508_consen 5 INELLEELSSKA----ERLEALPELKTELSSSPFLE-R-----LPEPVLFDCLNT-SN--REQVELICDILKRLLSALSP 71 (503)
T ss_pred HHHHHHHHhccc----chHHHHHHHHHHHhhhhHHH-h-----chHHHHHHHHhh-cC--hHHHHHHHHHHHHHHhccCH
Confidence 445666666552 57777877776543322111 1 122336777876 33 23346777777777654332
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
.. + ..+..+.|...|.+.++.+|..+++.|.++..+.+....+....++++.++.+|.++ +.++.+.|+.+|
T Consensus 72 -----~~-l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L 143 (503)
T PF10508_consen 72 -----DS-L-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKAL 143 (503)
T ss_pred -----HH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 11 1 467789999999999999999999999999988766555555589999999999999 899999999999
Q ss_pred HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
.+|+..+.+...+++.+.+..|..++.. +++.++-+.+.++..++. +++....+. ..|.++.++..+.+.+..++.
T Consensus 144 ~~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~-~sgll~~ll~eL~~dDiLvql 220 (503)
T PF10508_consen 144 KKLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVV-NSGLLDLLLKELDSDDILVQL 220 (503)
T ss_pred HHHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHH-hccHHHHHHHHhcCccHHHHH
Confidence 9999998888888899999999999953 567788899999999987 556666666 679999999999999999999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
+|+.+|..|+.. +.....+.+.|++++|...++..
T Consensus 221 nalell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 221 NALELLSELAET---PHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhcc
Confidence 999999999983 57788899999999999999554
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=6e-11 Score=123.83 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
-+..|..+|.+|.-++..|+..+-...|+++.+|..|.+ . ..+++.....+|.||+...+. |-+.++.+.|-+.
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s-~--peeL~QV~AsvLRNLSWRAD~---nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS-A--PEELLQVYASVLRNLSWRADS---NMKKVLRETGSVT 440 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc-C--hHHHHHHHHHHHHhccccccc---cHHHHHHhhhhHH
Confidence 456788899999988888988888777999999999988 2 224557777899999987765 2455588889888
Q ss_pred HHHHHHh-cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcC----Cc
Q 015939 183 LFLEILR-EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITLSV----YR 253 (398)
Q Consensus 183 ~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~----~~ 253 (398)
.|+..-- ..........+.+|+||+-+ -+||..|....|++..||.+|.=. ......+.+-.+|.|.++ ..
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 8887654 44556677888999999988 789999998899999999999743 245678889999999864 55
Q ss_pred chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939 254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW 332 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~ 332 (398)
+.|+.+-+.+.+..|+..|. +.+--++-+++++|.||+. +++.++.+. +.|+|+.|-.++.+.....-+-++.+|.
T Consensus 521 ~yRQILR~~NCLq~LLQ~LK--S~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mLrnLIhSKhkMIa~GSaaALr 597 (2195)
T KOG2122|consen 521 DYRQILRRHNCLQTLLQHLK--SHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPMLRNLIHSKHKMIAMGSAAALR 597 (2195)
T ss_pred hHHHHHHHhhHHHHHHHHhh--hcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 67777889999999999995 4678899999999999976 888888888 5699999999999988888899999999
Q ss_pred HhhccC
Q 015939 333 SMCCVY 338 (398)
Q Consensus 333 ~l~~~~ 338 (398)
||..+-
T Consensus 598 NLln~R 603 (2195)
T KOG2122|consen 598 NLLNFR 603 (2195)
T ss_pred HHhcCC
Confidence 988763
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.22 E-value=1.4e-09 Score=101.77 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=210.8
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc----cCCcHHHHHHHHHHHHhhhc
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK----RRSEIAVLESAVRVLNLIVN 162 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~----~~~~~~~~~~al~~L~~l~~ 162 (398)
++.|.+..+|++. +...+....|.++|.++.++|..+-+. |+-..++..|+.. .....+...-+...|.|...
T Consensus 89 le~Lrq~psS~d~--ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 89 LELLRQTPSSPDT--EVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHhCCCCCcc--cHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 3333333344433 478889999999999999999999999 9988888888763 11233555667778888887
Q ss_pred ccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcC-ch-hHHHhhchhhHHHHHHHHhccccCHHH
Q 015939 163 ENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLD-NE-SKRRVLETENLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 238 (398)
+.+. .+.. +.+.|+++.|...+.-+ +.+..+.......+|.+- -+ ...+..+ ......|+++|.....++.
T Consensus 166 ~~~~---l~aq-~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d-~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 166 DSRE---LRAQ-VADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD-CSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred CcHH---HHHH-HHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc-chHHHHHHHHHHHhhccch
Confidence 6654 4677 77999999999998755 556666666666666544 22 3445544 7788899999988767778
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcch-------hhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH
Q 015939 239 NDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQI-------LTVEKSIKMLSIVATCSEGRLALSEEASCAGR 311 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~-------~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~ 311 (398)
.+-....|...+.++..+-.+++.|.+..++++++. ..+. .....++.....|..+++.-+.+...+..+..
T Consensus 241 ~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~-~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~ 319 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRN-MKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF 319 (604)
T ss_pred hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHh-cccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence 888999999999999999999999999999999963 1122 22234444444555566666677645447889
Q ss_pred HHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh----cCcHHHHHHHHHHHHHHhc
Q 015939 312 VVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS----ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 312 Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~----~~~~~~k~~A~~lL~~l~~ 381 (398)
++.++.+.+....-.+.-++.|+++. ++....+++.|.+.+|+..+.. +++.+.+..+..+||+|-=
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~---D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARR---DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 99999988888888999999999974 5777889999999999999944 4566777777888888754
No 30
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.21 E-value=3.6e-09 Score=100.07 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=171.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhc--CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc------CC
Q 015939 108 LVKVAKFATGCEANRRFLASY--GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT------YN 179 (398)
Q Consensus 108 l~~L~~l~~~~~~~r~~i~~~--~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~------~g 179 (398)
+..+..+-+.....|..+.+. ++....++++|+.. ..+.+++...+..+..+..+++.. ..++.. ..
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~----~~~~~~~~~~~~~~ 105 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSR----VELFLELAKQDDSD 105 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH----HHHHHHHHHHHHHHHH-SSSS----HHHHHHHHH-TTH-
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHhcccccch
Confidence 344444444444445444443 13477788888873 244567899999999998877752 222221 23
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchH
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
....+++++++++..++..|+.+|..|......+..-.. .+.++.++.+|++. .+.+.+..++.+|.+|...++.|
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 788899999999999999999999999877544443322 46788888887753 24556799999999999999999
Q ss_pred HHHHHcCChHHHHHHh-----cccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHH
Q 015939 257 AQLVELGMVQILTRIL-----SDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVV 330 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL-----~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~ 330 (398)
..+.+.|+++.++.++ .+...+..++-.++-++..|+-+++....+.. .+.|+.|+++++. ...++.+-++.+
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHH
Confidence 9999999999999999 23456778889999999999999999999984 5799999999986 688999999999
Q ss_pred HHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHH
Q 015939 331 IWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGD 374 (398)
Q Consensus 331 L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~ 374 (398)
|.|+..... ......|+..|+++.+-.+. +...++++.+--..
T Consensus 264 l~Nl~~~~~-~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 264 LRNLLSKAP-KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp HHHTTSSSS-TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHHHHhccH-HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999997643 34888888887777554444 33456666654433
No 31
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.5e-09 Score=102.47 Aligned_cols=285 Identities=15% Similarity=0.164 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.|+.|+.++.++.. .+.++.|+..|..+++. +|..++. .+.++|+..|.. ...+++....++.++.++..+
T Consensus 21 aETI~kLcDRvessTL-~eDRR~A~rgLKa~srk---YR~~Vga--~Gmk~li~vL~~-D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL-LEDRRDAVRGLKAFSRK---YREEVGA--QGMKPLIQVLQR-DYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred HhHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHH---HHHHHHH--cccHHHHHHHhh-ccCCHHHHHHHHHHHHHHHhc
Confidence 6789999999988766 56999999999999966 8888886 568999999987 556778889999999999887
Q ss_pred cc------hH-------HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHH
Q 015939 164 NG------VK-------EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFD 228 (398)
Q Consensus 164 ~~------~~-------~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~ 228 (398)
++ +. +..-...+...+.|..|+..+...+..+|..++..|.+|... .+.+..+...+-+|..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 64 11 111123345789999999999999999999999999988766 5777777766889999999
Q ss_pred HhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccC--cchhhHHHHHHHHHHHhCCH-HHHHHHhh
Q 015939 229 YLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSR--TQILTVEKSIKMLSIVATCS-EGRLALSE 304 (398)
Q Consensus 229 lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~~~-~~~~~i~~ 304 (398)
+|.+. ....+..++-.|..|+.+..+.+++| =.+++..|.+++.... ...-|++.|+..|-||.++. .+++-+.
T Consensus 174 lL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr- 251 (970)
T KOG0946|consen 174 LLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR- 251 (970)
T ss_pred HHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh-
Confidence 99998 55589999999999999888888877 5789999999996322 23368899999999999855 5666666
Q ss_pred ccCcHHHHHHHHhc---cChhH----------HHHHHHHHHHhhccCCC----hhHHHHHHhcCCHHHHHHHHhhcC-cH
Q 015939 305 EASCAGRVVERVMK---VGKTA----------REDAVVVIWSMCCVYKD----ARVKEAVVNSNGLTKLLLVMQSEN-EG 366 (398)
Q Consensus 305 ~~g~v~~Lv~~l~~---~~~~~----------~~~a~~~L~~l~~~~~~----~~~~~~~~~~g~~~~Ll~~l~~~~-~~ 366 (398)
..+.||.|.++|.. ++.++ -..|+.++..+..-+.. ..+...+.+.+++..|+.++-..+ ..
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 56899999988754 33211 12334444443321111 234467788999999999886553 23
Q ss_pred HHHHHHHHHHH
Q 015939 367 IVRKMCGDLVK 377 (398)
Q Consensus 367 ~~k~~A~~lL~ 377 (398)
.++.-+...+.
T Consensus 332 dIltesiitvA 342 (970)
T KOG0946|consen 332 DILTESIITVA 342 (970)
T ss_pred hHHHHHHHHHH
Confidence 45544443333
No 32
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.16 E-value=1.9e-11 Score=77.53 Aligned_cols=38 Identities=34% Similarity=0.785 Sum_probs=33.2
Q ss_pred ccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcc
Q 015939 16 CPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPAT 54 (398)
Q Consensus 16 Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~ 54 (398)
||||.+.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 67899999999999999987 6789986
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1e-09 Score=103.84 Aligned_cols=196 Identities=18% Similarity=0.284 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939 147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSAL 226 (398)
Q Consensus 147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L 226 (398)
.+++..|+..|.|++.+-... .. +.....+..||+.|+.++.+........|..|+..++||..++. .|.+..|
T Consensus 277 eqLLrva~ylLlNlAed~~~E----lK-MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL 350 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVE----LK-MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHH----HH-HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHH
Confidence 356677888899998765542 22 55668899999999999999999999999999999999999998 8999999
Q ss_pred HHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939 227 FDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA 306 (398)
Q Consensus 227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~ 306 (398)
+++.... +++++...+..|.||+.+..++.+||..|.+|.|+.+|. +..-..-|+.+|..++.++..+..+. ..
T Consensus 351 ~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~----~d~~~~iA~~~lYh~S~dD~~K~Mfa-yT 424 (791)
T KOG1222|consen 351 LKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD----SDTKHGIALNMLYHLSCDDDAKAMFA-YT 424 (791)
T ss_pred HHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC----CcccchhhhhhhhhhccCcHHHHHHH-HH
Confidence 9999998 899999999999999999999999999999999999994 33344568999999999888888887 56
Q ss_pred CcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHH
Q 015939 307 SCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLL 357 (398)
Q Consensus 307 g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll 357 (398)
.+|+.+.+.+..+ +.++...-+..-.|+|.+ .+..+.+++..++..|.
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~ln---kRNaQlvceGqgL~~LM 473 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLN---KRNAQLVCEGQGLDLLM 473 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhc---cccceEEecCcchHHHH
Confidence 8999999988764 344444444444678865 45666666666666554
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.10 E-value=3.4e-11 Score=77.03 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=23.2
Q ss_pred ccCccccCCC----ceecCCCcccchhHHHHHHhcC---CCCCC
Q 015939 16 CPISLDVMKS----PVSLCTGVTYDRSSIQHWLESG---HDTCP 52 (398)
Q Consensus 16 Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~---~~~CP 52 (398)
||||++ |.+ |++|+|||+||++||+++++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999754 34577
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8.3e-09 Score=97.80 Aligned_cols=256 Identities=11% Similarity=0.128 Sum_probs=177.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..|++.|.-++.+ -..-...=|..++- -.+|+..+.+. |.|+.|+.++.. .. +.++...+..|.|++.+...
T Consensus 307 ~mLVKaLdr~n~~--Ll~lv~~FLkKLSI-f~eNK~~M~~~-~iveKL~klfp~-~h--~dL~~~tl~LlfNlSFD~gl- 378 (791)
T KOG1222|consen 307 AMLVKALDRSNSS--LLTLVIKFLKKLSI-FDENKIVMEQN-GIVEKLLKLFPI-QH--PDLRKATLMLLFNLSFDSGL- 378 (791)
T ss_pred HHHHHHHcccchH--HHHHHHHHHHHhhh-hccchHHHHhc-cHHHHHHHhcCC-CC--HHHHHHHHHHhhhccccccc-
Confidence 3455555544442 22222333444443 36789999999 999999999987 33 45668899999999998775
Q ss_pred HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILI 247 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 247 (398)
|.. ++..|.+|.|+.+|.+.+. +.-|..+|..++.+++.|..+.. ..+|+.|.+.+-.+.+.++-.+.+..-.
T Consensus 379 ---r~K-Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ci 451 (791)
T KOG1222|consen 379 ---RPK-MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCI 451 (791)
T ss_pred ---cHH-HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence 666 7899999999999987653 34578899999999999999987 7899999987665535445444444445
Q ss_pred HhcCCcchHHHHHHcCChHHHH-------------------------------------HHhcccCcchhhHHHHHHHHH
Q 015939 248 TLSVYRSVKAQLVELGMVQILT-------------------------------------RILSDSRTQILTVEKSIKMLS 290 (398)
Q Consensus 248 ~Ls~~~~~~~~~v~~g~v~~Lv-------------------------------------~lL~~~~~~~~~~~~al~~L~ 290 (398)
|||.+..|.+.+++-.++..|+ .+++ .+.+.+..-.|+++|.
T Consensus 452 Nl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~-nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 452 NLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAK-NDNSESFGLECLGTLA 530 (791)
T ss_pred HHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHh
Confidence 7777766665555544444333 3332 1345566778999999
Q ss_pred HHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh
Q 015939 291 IVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS 362 (398)
Q Consensus 291 ~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~ 362 (398)
||...+-.-..|......||-+-..|+.+ .+..+-..+-.+..+++ +..+......+|+++.++.+|+.
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~---d~~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR---DLDCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh---hhHHHHHhCccccHHHHHHHHHh
Confidence 99886666666766677888777777753 22333333434444444 46788888899999999999965
No 36
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.08 E-value=4.6e-11 Score=81.70 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=31.5
Q ss_pred CcccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCccc
Q 015939 12 NLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPATM 55 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~~~ 55 (398)
..++||||++.|+|||+. .|||+|+|++|.+|+.. +...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999997 69999999999999943 345799965
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=5.2e-09 Score=98.97 Aligned_cols=210 Identities=14% Similarity=0.154 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcC-----CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYG-----GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT 177 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~-----g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~ 177 (398)
.....+.-+..+..+++...+.+.... ....++++++.+ + +..+...|+..|..+....+.. .. -..
T Consensus 73 ~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~--D~~i~~~a~~iLt~Ll~~~~~~----~~-~~~ 144 (312)
T PF03224_consen 73 TVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-N--DSFIQLKAAFILTSLLSQGPKR----SE-KLV 144 (312)
T ss_dssp HHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--S--SHHHHHHHHHHHHHHHTSTTT------H-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-C--CHHHHHHHHHHHHHHHHcCCcc----cc-chH
Confidence 666777788888888776666655521 246777787776 4 4456699999999998776652 11 111
Q ss_pred CCChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHh------ccccCHHHHHHHHHHHH
Q 015939 178 YNCLPLFLEILREG----NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL------KLAEDQALNDAILSILI 247 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL------~~~~~~~~~~~a~~aL~ 247 (398)
.+.++.+++.|.+. +.+.+..|+.+|.+|...+++|..+.+ .|+++.|+.+| .+..+.+.+-.++-++|
T Consensus 145 ~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 145 KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 45678888888753 456678899999999999999999999 89999999999 44457788999999999
Q ss_pred HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH--HHHHHhhccCcHHHHHHHHhc---cChh
Q 015939 248 TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE--GRLALSEEASCAGRVVERVMK---VGKT 322 (398)
Q Consensus 248 ~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~--~~~~i~~~~g~v~~Lv~~l~~---~~~~ 322 (398)
-|+.+++....+...+.|+.|+++++. ...+++++-++++|+||...+. ....++. .|+++ +++.|.. ++++
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~-~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~-~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKD-SIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLK-TLQNLSERKWSDED 300 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHH-HHHHHHSS--SSHH
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHh-cccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHH-HHHHHhcCCCCCHH
Confidence 999999999999999999999999984 5688999999999999998665 7777773 35444 4444543 4444
Q ss_pred HH
Q 015939 323 AR 324 (398)
Q Consensus 323 ~~ 324 (398)
..
T Consensus 301 l~ 302 (312)
T PF03224_consen 301 LT 302 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>PRK09687 putative lyase; Provisional
Probab=99.03 E-value=9.1e-08 Score=88.63 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=152.2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..+.+.+.+.+. ..+..|++.|..+...... .. -+++.|..++.. +++..++..|+.+|..+......
T Consensus 56 ~~~l~~ll~~~d~--~vR~~A~~aLg~lg~~~~~------~~-~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 56 FRLAIELCSSKNP--IERDIGADILSQLGMAKRC------QD-NVFNILNNLALE--DKSACVRASAINATGHRCKKNPL 124 (280)
T ss_pred HHHHHHHHhCCCH--HHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccc
Confidence 3444444444443 3677777777776532110 11 356666666443 34456778888888887532221
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
.....+..+...+.+.+..+|..++.+|..+ .. ..+++.|+.+|++. ++.++..|+.+|
T Consensus 125 ---------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~-~~~VR~~A~~aL 183 (280)
T PRK09687 125 ---------YSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------ND-EAAIPLLINLLKDP-NGDVRNWAAFAL 183 (280)
T ss_pred ---------cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 1223456677777777888998888888543 23 55789999999988 888999999999
Q ss_pred HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
..+....+ .+++.|+.+|. +.+..++..|...|..+- +..+++.|++.+.+++ ++..
T Consensus 184 g~~~~~~~--------~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~-----------~~~av~~Li~~L~~~~--~~~~ 240 (280)
T PRK09687 184 NSNKYDNP--------DIREAFVAMLQ--DKNEEIRIEAIIGLALRK-----------DKRVLSVLIKELKKGT--VGDL 240 (280)
T ss_pred hcCCCCCH--------HHHHHHHHHhc--CCChHHHHHHHHHHHccC-----------ChhHHHHHHHHHcCCc--hHHH
Confidence 98832222 36788999994 478889999998887753 2357888888888655 5667
Q ss_pred HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
|+.+|..+.. + -+++.|..+++.+.+.+++.+|.+.|+.
T Consensus 241 a~~ALg~ig~----~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 241 IIEAAGELGD----K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhcCC----H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 7777766653 1 3678899999766699999999888763
No 39
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.03 E-value=1.9e-10 Score=73.91 Aligned_cols=39 Identities=41% Similarity=0.887 Sum_probs=35.9
Q ss_pred ccCccccCCCce-ecCCCcccchhHHHHHHh-cCCCCCCcc
Q 015939 16 CPISLDVMKSPV-SLCTGVTYDRSSIQHWLE-SGHDTCPAT 54 (398)
Q Consensus 16 Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~-~~~~~CP~~ 54 (398)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 556779986
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.99 E-value=1.8e-10 Score=78.59 Aligned_cols=60 Identities=28% Similarity=0.494 Sum_probs=34.1
Q ss_pred CCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHH
Q 015939 11 PNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLI 73 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i 73 (398)
.+-+.|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|+.+-...|+..|..|..+|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 3457899999999999975 69999999999887653 499999999999999999888765
No 41
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.92 E-value=4.6e-10 Score=101.03 Aligned_cols=65 Identities=18% Similarity=0.405 Sum_probs=60.4
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
.-+.|-||.++|+-||++|||||||.-||.+++.. .+.||.|..+++..+++.|..+.++++.+.
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 45689999999999999999999999999999985 889999999999999999999999998875
No 42
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=1.2e-09 Score=73.40 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=40.9
Q ss_pred CcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
+++.|+||.+-+.++++++|||. ||..|+.+|+. ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 4778999998864
No 43
>PRK09687 putative lyase; Provisional
Probab=98.86 E-value=3.6e-07 Score=84.70 Aligned_cols=225 Identities=8% Similarity=0.012 Sum_probs=160.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..|+..|.+.+.. .+..|+..|..+-. . .+++.+..++.+ . +..++..|+++|..+-.....
T Consensus 25 ~~~L~~~L~d~d~~--vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~-~--d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSL--KRISSIRVLQLRGG-----------Q-DVFRLAIELCSS-K--NPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred HHHHHHHHhCCCHH--HHHHHHHHHHhcCc-----------c-hHHHHHHHHHhC-C--CHHHHHHHHHHHHhcCCCccc
Confidence 55677788777654 78888888876642 2 567777887776 3 456679999999987542211
Q ss_pred HHHhhHhhhccCCChHHHHHH-HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEI-LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
....++.|..+ ++..++.+|..|+.+|..+....... . ..++..+...+.+. ++.++..++.+
T Consensus 88 ----------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~a 151 (280)
T PRK09687 88 ----------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDK-STNVRFAVAFA 151 (280)
T ss_pred ----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCC-CHHHHHHHHHH
Confidence 12357888877 55668999999999999986443211 1 34567778888888 88999999999
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
|..+. +..+++.|+.+|. ++++.+...|+.+|..+... ++.+++.|+..+.+.+..++.
T Consensus 152 Lg~~~----------~~~ai~~L~~~L~--d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~ 210 (280)
T PRK09687 152 LSVIN----------DEAAIPLLINLLK--DPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRI 210 (280)
T ss_pred HhccC----------CHHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHH
Confidence 96543 2238899999995 47788999999999988321 234566788889999999999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.|+..|..+-. + -+++.|+..++.+ + .+..|...|..+..
T Consensus 211 ~A~~aLg~~~~----~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 211 EAIIGLALRKD----K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHccCC----h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence 99998866432 2 3666777777654 2 45566666666554
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.2e-07 Score=84.94 Aligned_cols=187 Identities=15% Similarity=0.190 Sum_probs=150.3
Q ss_pred CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhH
Q 015939 144 RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENL 222 (398)
Q Consensus 144 ~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~ 222 (398)
..+.+-.+.|+.-|..++.+-+. -.. +...|+...++..|.+++.++|+.|+++|...+.+ +.....+.+ .|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDn----And-l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDN----AND-LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhh----HHh-HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-ccc
Confidence 34455568888888777755443 233 66788888999999999999999999999999887 778888887 889
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH
Q 015939 223 LSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLA 301 (398)
Q Consensus 223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~ 301 (398)
++.|+..|.+..+..++..|+-|+++|-.+. .....+...++...|..+|++++.+...+.+++-.+..|.........
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999997756667799999999998766 477778899999999999986567889999999999999874443333
Q ss_pred HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 302 LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 302 i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
+....|....++.+....+....++++..+..+..
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 55455777777777777889999999988877654
No 45
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.82 E-value=2.6e-09 Score=94.77 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCCcccccCccccCCCc--------eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 10 VPNLFRCPISLDVMKSP--------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dP--------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
...+..||||.+.+.+| ++.+|||+||+.||.+|... ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 34567899999988764 56789999999999999874 679999998765
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.81 E-value=3e-06 Score=82.12 Aligned_cols=265 Identities=15% Similarity=0.110 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
....|...|..+...+..+....... -....|...|++ .+ +...+.-++.+|..|...++. |.. +.+.++++
T Consensus 117 i~~~a~~iLt~l~~~~~~~~~~~~l~-~~~~~l~~~l~~-~~-~~~~~~~~v~~L~~LL~~~~~----R~~-f~~~~~v~ 188 (429)
T cd00256 117 IVHMSFSILAKLACFGLAKMEGSDLD-YYFNWLKEQLNN-IT-NNDYVQTAARCLQMLLRVDEY----RFA-FVLADGVP 188 (429)
T ss_pred HHHHHHHHHHHHHhcCccccchhHHH-HHHHHHHHHhhc-cC-CcchHHHHHHHHHHHhCCchH----HHH-HHHccCHH
Confidence 45566666776665444321111100 123344445544 22 234457788899888877665 555 66777999
Q ss_pred HHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-------
Q 015939 183 LFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR------- 253 (398)
Q Consensus 183 ~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~------- 253 (398)
.|+.+|+.. +.+.+-+++.+++-|+.+++....... .+.|+.|+++++...-.++.+-++.+|.||....
T Consensus 189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKK 267 (429)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhh
Confidence 999999864 568889999999999999877776665 8999999999998767889999999999997632
Q ss_pred chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH-------HHHhCCH------------------------HHHHHH
Q 015939 254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML-------SIVATCS------------------------EGRLAL 302 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L-------~~La~~~------------------------~~~~~i 302 (398)
.....|++.|..+.+-.+....=+|+++.+.--.+- ..+++-+ +|...+
T Consensus 268 ~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf 347 (429)
T cd00256 268 TAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL 347 (429)
T ss_pred hHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH
Confidence 345667888776655555543335666654322222 2233222 333344
Q ss_pred hhcc-CcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 303 SEEA-SCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 303 ~~~~-g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
.++. -.+..|+++|.. .++.+..-|+.=+..++.+. +.-+..+-+.|+=..+..+|... ++++|..|..+++.+
T Consensus 348 ~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~--P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQkl 423 (429)
T cd00256 348 NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY--PRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKL 423 (429)
T ss_pred HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC--ccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 3322 246888888854 56666777777778888775 46667777899988888888866 899999998888765
No 47
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.80 E-value=2.3e-09 Score=69.92 Aligned_cols=40 Identities=35% Similarity=0.812 Sum_probs=34.5
Q ss_pred cccCccccC---CCceecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939 15 RCPISLDVM---KSPVSLCTGVTYDRSSIQHWLESGHDTCPATM 55 (398)
Q Consensus 15 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~ 55 (398)
.||||.+.| ..++.++|||.|+++||.+|+.. ..+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 499999999 46788899999999999999986 56999996
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.3e-09 Score=100.78 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=62.2
Q ss_pred cccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhh
Q 015939 2 VRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQ 79 (398)
Q Consensus 2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 79 (398)
..........+++.||||.+.|++|++++|||+||+.||..+|. +...||.|+. ... .+.+|..+..++..+...
T Consensus 2 ~~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 2 ASAALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL 76 (386)
T ss_pred cchhhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence 34445566778999999999999999999999999999999998 5678999996 222 667899888888888753
No 49
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.76 E-value=6.9e-09 Score=67.80 Aligned_cols=43 Identities=42% Similarity=0.856 Sum_probs=38.9
Q ss_pred cccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCccccc
Q 015939 15 RCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQI 57 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~ 57 (398)
.||||.+.+.+|+.++ |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999887 999999999999998767789999865
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.75 E-value=7.8e-06 Score=79.27 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=175.8
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc-----CCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT-----YNCLPLFLEILREGNLDSKIGSIKILD 204 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 204 (398)
..+..++.+|... ...++.+..+..+..|...++. +...+.+ ......++.+|+.++.-+...|+.+|.
T Consensus 53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~----~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDT----RVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchH----HHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 5678888888762 3356778999999888887654 2322332 567888889999999999999999999
Q ss_pred HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939 205 SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEK 284 (398)
Q Consensus 205 ~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~ 284 (398)
.|.........-....-.+.-|...|++..+...+..++.+|..|...++.|..+.+.++++.|+.+|+....+..++-.
T Consensus 127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~ 206 (429)
T cd00256 127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ 206 (429)
T ss_pred HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence 88754221111001012334555666655456788889999999999999999999999999999999742335678889
Q ss_pred HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCC----ChhHHHHHHhcCCHHHHHHH
Q 015939 285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYK----DARVKEAVVNSNGLTKLLLV 359 (398)
Q Consensus 285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~g~~~~Ll~~ 359 (398)
++-++..|+-.++....+. ..+.|+.++++++. ...++.+-++.+|.|+...+. .......+++.|+++ ++..
T Consensus 207 ~ll~lWlLSF~~~~~~~~~-~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~ 284 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLK-RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQS 284 (429)
T ss_pred HHHHHHHHhccHHHHHhhc-cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHH
Confidence 9999999999888777665 56999999999986 678889999999999987531 123556777777655 5566
Q ss_pred Hhh--cCcHHHHHHHHHHHHHHhc
Q 015939 360 MQS--ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 360 l~~--~~~~~~k~~A~~lL~~l~~ 381 (398)
|+. -.++.+.+--..+-..|.+
T Consensus 285 L~~rk~~DedL~edl~~L~e~L~~ 308 (429)
T cd00256 285 LEQRKYDDEDLTDDLKFLTEELKN 308 (429)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHH
Confidence 633 3566666555544444443
No 51
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.74 E-value=5.3e-09 Score=92.36 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=56.9
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
-+.|-||.+.++-|+.++||||||.-||.+++.. .+.||+|++..+..-+..+...+..++.+.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 3589999999999999999999999999999975 789999999988888888877777777765
No 52
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.9e-09 Score=89.90 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=68.7
Q ss_pred cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
..+++|+-++|.|+.++|++||+.|+|.||+|..|++++..-..+.|+|+.+|....++||.+++..|+.|...+
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999765668999999999999999999999999987543
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.9e-09 Score=86.48 Aligned_cols=51 Identities=29% Similarity=0.626 Sum_probs=43.1
Q ss_pred cccccCccccCCC--ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc
Q 015939 13 LFRCPISLDVMKS--PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV 64 (398)
Q Consensus 13 ~~~Cpi~~~~~~d--Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~ 64 (398)
-|.||||++-++. ||-++|||.||+.||.+.++. ...||.|++.+..+++.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 4899999999976 555789999999999999986 55799999988776654
No 54
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.3e-09 Score=89.89 Aligned_cols=58 Identities=28% Similarity=0.549 Sum_probs=51.1
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcccccCCCCCCcccHHH
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTKEFVPNLTL 69 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~~~l~~n~~l 69 (398)
..|-|-||++.-+|||++.|||=||=-||.+|+.. +...||+|+..++.+.++|-+.-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 56899999999999999999999999999999853 45679999999998888887544
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.1e-09 Score=91.85 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=46.7
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l 63 (398)
+..+.|-+|++-++||--+||||-||=+||..|..+ ...||.||+.+++..+
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 345899999999999999999999999999999975 5569999999988764
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.6e-06 Score=80.42 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=145.1
Q ss_pred CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHH
Q 015939 191 GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLVELGMVQILT 269 (398)
Q Consensus 191 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv 269 (398)
.+.+-++.|..-|..+..+=+|...+.. .|++.+|+.+|.+. +..+++.|+++|...+.+.. .+..+.+.|+.+.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3678888899999999999788888887 78999999999998 89999999999999998665 666677999999999
Q ss_pred HHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChhHHHH
Q 015939 270 RILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEA 346 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 346 (398)
.++. .+.+..++.+|+.++..|-. ++.+...+. ..++...|..+|.+ .+...+..++..+..+.... .....
T Consensus 173 ~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~--~s~~d- 247 (342)
T KOG2160|consen 173 KILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED--KSDED- 247 (342)
T ss_pred HHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--hhhhh-
Confidence 9997 45666788999999999988 557888887 45779999999998 68888999999999998753 22333
Q ss_pred HHhcCCHHHHHHHHhhcCcHHHHHHHHH-HHHHHhc
Q 015939 347 VVNSNGLTKLLLVMQSENEGIVRKMCGD-LVKVLGK 381 (398)
Q Consensus 347 ~~~~g~~~~Ll~~l~~~~~~~~k~~A~~-lL~~l~~ 381 (398)
+...-+++..+..+.+.....+++.|.. +|..+.+
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 4444445555555555557788888855 4444444
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.69 E-value=2.7e-06 Score=91.56 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI 160 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l 160 (398)
.++.|++.|.+.+.. .+..|+..|..+.. . ++++.|...|++ .+ ..++..|+.+|..+
T Consensus 622 ~~~~L~~~L~D~d~~--VR~~Av~~L~~~~~-----------~-~~~~~L~~aL~D-~d--~~VR~~Aa~aL~~l 679 (897)
T PRK13800 622 SVAELAPYLADPDPG--VRRTAVAVLTETTP-----------P-GFGPALVAALGD-GA--AAVRRAAAEGLREL 679 (897)
T ss_pred hHHHHHHHhcCCCHH--HHHHHHHHHhhhcc-----------h-hHHHHHHHHHcC-CC--HHHHHHHHHHHHHH
Confidence 355677777766554 77778877776542 2 677888888866 43 45667888877665
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.67 E-value=1.8e-08 Score=63.51 Aligned_cols=39 Identities=51% Similarity=1.015 Sum_probs=35.9
Q ss_pred ccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcc
Q 015939 16 CPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPAT 54 (398)
Q Consensus 16 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~ 54 (398)
||||.+..++|++++|||.||..|+.+|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556779976
No 59
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=2.5e-07 Score=84.67 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=59.4
Q ss_pred CcccccCcccc-CCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC----CcccHHHHHHHHHHH-----
Q 015939 12 NLFRCPISLDV-MKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE----FVPNLTLHRLIAHWS----- 77 (398)
Q Consensus 12 ~~~~Cpi~~~~-~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l~~~i~~~~----- 77 (398)
++..||+|+.- +.+| .+.+|||+||++||.+.|..|...||.|+.++.... ..++..+.+-|+-..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i 81 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKI 81 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHH
Confidence 45689999983 3455 334799999999999998777778999999998766 455555544444332
Q ss_pred -h----hCCCC------HHHHHHHHHHHHcCCC
Q 015939 78 -H----QLTVP------EQEVRVWIEKIKSENE 99 (398)
Q Consensus 78 -~----~~p~p------~~~i~~l~~~l~~~~~ 99 (398)
. .+++- .+.+..++-.|.++.+
T Consensus 82 ~Nk~e~dF~~l~~yNdYLE~vEdii~nL~~~~d 114 (309)
T TIGR00570 82 YNKREEDFPSLREYNDYLEEVEDIVYNLTNNID 114 (309)
T ss_pred HccchhccCCHHHHHHHHHHHHHHHHHhhcCCc
Confidence 1 12222 3556677777766543
No 60
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.1e-06 Score=83.06 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
..+..|+..|...++ +-.+.+|+.+|...... ++..-.-+.-. -+||.|+.+|+...+ .++.-.|+++|..|+.-
T Consensus 167 Sk~kkLL~gL~~~~D-es~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n--~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESD-ESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHN--FDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHHHHhccccCC-hHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhcccc--HHHHHHHHHHHHHHHhh
Confidence 356667777766532 23788899888875543 33333322222 689999999987333 45669999999999864
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
-+. . ..++++.++||.|+.-|..= -.++.+.+..+|..|+... .++++ . .|++-..+.+|.=- +..+++.|
T Consensus 243 lP~---S-~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL-~-AG~l~a~LsylDFF-Si~aQR~A 314 (1051)
T KOG0168|consen 243 LPR---S-SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAIL-Q-AGALSAVLSYLDFF-SIHAQRVA 314 (1051)
T ss_pred ccc---h-hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHH-h-cccHHHHHHHHHHH-HHHHHHHH
Confidence 443 2 44478999999999877643 5678899999999999873 34443 4 68888888887755 56699999
Q ss_pred HHHHHHhcCC--cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHH
Q 015939 243 LSILITLSVY--RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 243 ~~aL~~Ls~~--~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
+.+..|.|.. .+.-..+++ ++|.|..+|+ ..|...++..+-++..++. .++--+++. ..|.|.....++
T Consensus 315 laiaaN~Cksi~sd~f~~v~e--alPlL~~lLs--~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFHFVME--ALPLLTPLLS--YQDKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLL 389 (1051)
T ss_pred HHHHHHHHhcCCCccchHHHH--HHHHHHHHHh--hccchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHH
Confidence 9999999853 333333444 7999999995 4788899999888888875 455567777 459999999988
Q ss_pred hcc----ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 317 MKV----GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 317 ~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
.-. +..+.---++.|..+|.. .+.........++...|..+|+..
T Consensus 390 svt~t~Ls~~~~~~vIrmls~msS~--~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 390 SVTPTILSNGTYTGVIRMLSLMSSG--SPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hcCcccccccchhHHHHHHHHHccC--ChHHHHHHHHhhHHHHHHHHHhcc
Confidence 752 333444556666666654 367788888899999998888754
No 61
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-06 Score=88.09 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=143.3
Q ss_pred hHHHHHHHhcC-ChhhHHHHHHHHH-HhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchH
Q 015939 181 LPLFLEILREG-NLDSKIGSIKILD-SISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVK 256 (398)
Q Consensus 181 i~~Lv~lL~~~-~~~~~~~a~~~L~-~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~ 256 (398)
+..|+.=|... ++..+..|+.-|+ +|+.. ++.-..+-- ..++|.|+.+|+...+++..-.|++||.+|+ ..++..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34444444433 5555555655555 44444 344333333 6799999999999989999999999999999 577888
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
..+|+.++||.|++=|. .-..-++.|.++.+|.-|+. ..-.++. .+|++...+.++.=-+..+|+.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR--~H~~AiL-~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISR--RHPKAIL-QAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHh--hccHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999998775 34677899999999999986 2224566 57999999999988899999999999999998
Q ss_pred cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.-..++..-. ..++|.|-.+|+.. +.+.-+.++-.+..+.+
T Consensus 324 si~sd~f~~v---~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 324 SIRSDEFHFV---MEALPLLTPLLSYQ-DKKPIESVCICLTRIAD 364 (1051)
T ss_pred cCCCccchHH---HHHHHHHHHHHhhc-cchhHHHHHHHHHHHHH
Confidence 6543333222 24688888888877 66677777776666665
No 62
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.57 E-value=2.1e-05 Score=79.96 Aligned_cols=303 Identities=16% Similarity=0.179 Sum_probs=185.2
Q ss_pred chhHHHHHH---hcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHcCCCCchhHHHH
Q 015939 36 DRSSIQHWL---ESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVP-EQ----EVRVWIEKIKSENESENSCVDY 107 (398)
Q Consensus 36 ~r~~i~~~~---~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p~p-~~----~i~~l~~~l~~~~~~~~~~~~a 107 (398)
.+.++.+-. ..|......-.+.+.--. ..+...|++.--+....... ++ .+..+.+.+.+++.. .+..|
T Consensus 23 ~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~--~~~lA 99 (526)
T PF01602_consen 23 KKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPY--IRGLA 99 (526)
T ss_dssp HHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHH--HHHHH
Confidence 344555543 235533333223222223 67888888887776543222 22 344566667666543 66778
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHH
Q 015939 108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEI 187 (398)
Q Consensus 108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~l 187 (398)
+..|.++... + +.+ -.++.+..+|.+ .+ +-++..|+.++..+...+++ . +... .++.+..+
T Consensus 100 L~~l~~i~~~--~----~~~--~l~~~v~~ll~~-~~--~~VRk~A~~~l~~i~~~~p~------~-~~~~-~~~~l~~l 160 (526)
T PF01602_consen 100 LRTLSNIRTP--E----MAE--PLIPDVIKLLSD-PS--PYVRKKAALALLKIYRKDPD------L-VEDE-LIPKLKQL 160 (526)
T ss_dssp HHHHHHH-SH--H----HHH--HHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHHHCHC------C-HHGG-HHHHHHHH
T ss_pred Hhhhhhhccc--c----hhh--HHHHHHHHHhcC-Cc--hHHHHHHHHHHHHHhccCHH------H-HHHH-HHHHHhhh
Confidence 8888887622 2 222 345667777776 43 45679999999888765443 1 2233 68999999
Q ss_pred HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939 188 LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI 267 (398)
Q Consensus 188 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~ 267 (398)
|.+.++.++..|+.++..+..+++.-..+ ....++.|.+++... ++-.+...+++|..++........- ...++.
T Consensus 161 L~d~~~~V~~~a~~~l~~i~~~~~~~~~~--~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~ 235 (526)
T PF01602_consen 161 LSDKDPSVVSAALSLLSEIKCNDDSYKSL--IPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK--NRIIEP 235 (526)
T ss_dssp TTHSSHHHHHHHHHHHHHHHCTHHHHTTH--HHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHH
T ss_pred ccCCcchhHHHHHHHHHHHccCcchhhhh--HHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH--HHHHHH
Confidence 98889999999999999982222111111 145666677777666 7778888888888887654332210 346677
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAV 347 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 347 (398)
+..+++ +.++.++-.|..++..+...+. +. ..+++.|+.++.+.++..+-.++..|..++... ...
T Consensus 236 l~~~l~--s~~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~ 301 (526)
T PF01602_consen 236 LLNLLQ--SSSPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPA 301 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHH
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chh
Confidence 777774 3677788888888887777666 22 245667888887777778888888887777642 122
Q ss_pred HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 348 VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 348 ~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+. .....+..+..+.+..+|.++..+|..+..
T Consensus 302 v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 302 VF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 22 222334455544467777777777766654
No 63
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=3.7e-08 Score=84.43 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=41.4
Q ss_pred CCCCcccccCccccCCC---------ceecCCCcccchhHHHHHHhcC-----CCCCCcccccCC
Q 015939 9 AVPNLFRCPISLDVMKS---------PVSLCTGVTYDRSSIQHWLESG-----HDTCPATMQILS 59 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~d---------Pv~~~~g~~~~r~~i~~~~~~~-----~~~CP~~~~~l~ 59 (398)
...++..|+||.+...+ +++.+|||+||..||.+|.+.. ..+||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45567899999998644 4777899999999999998631 357999999875
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=5.9e-06 Score=83.05 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=167.0
Q ss_pred CCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCcc-
Q 015939 178 YNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSVYRS- 254 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~~- 254 (398)
+.-|+.|++-+.+. =.+-|..|++.|..++. .+|..++. .++++|+..|+.+ .|++....++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 45688888888766 56778999999999988 58888875 5689999999876 789999999999999976552
Q ss_pred ------hH----------HHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHH
Q 015939 255 ------VK----------AQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVER 315 (398)
Q Consensus 255 ------~~----------~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~ 315 (398)
.+ ..++ ..+-|..|+..+. .-|-.|+..+...|.+|-+ ..+.+..+...+.+|..++.+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 22 2233 5678899999994 3688999999999999865 668888998899999999999
Q ss_pred HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH---HHHHHHHHHHHHHhcCCCCCCCCCCc
Q 015939 316 VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG---IVRKMCGDLVKVLGKASGLGNYQTKT 392 (398)
Q Consensus 316 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~---~~k~~A~~lL~~l~~~~~~~~~~~~~ 392 (398)
|.+.-..++-.|+-.|..+.+.+ ..+...++=.+++..|+..+...|+. -+-+-+..+|.+|=++.-.+..-||-
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n--~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDN--SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 99988889999999999999864 57778888899999999999765422 46677777777777755555555554
Q ss_pred cccc
Q 015939 393 AHIM 396 (398)
Q Consensus 393 ~~~~ 396 (398)
++.+
T Consensus 253 ~~~i 256 (970)
T KOG0946|consen 253 GSYI 256 (970)
T ss_pred cccH
Confidence 4433
No 65
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.48 E-value=1e-07 Score=61.94 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=35.3
Q ss_pred cccCccccC---CCceecCCCcccchhHHHHHHhcCCCCCCcccc
Q 015939 15 RCPISLDVM---KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 15 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
.||+|.+.+ ..|++++|||+||..|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999999 468899999999999999998 34668999974
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.44 E-value=2.8e-06 Score=67.68 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=105.2
Q ss_pred CChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 179 NCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 179 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
+.+..||+-.... +.+.++....=|.|++.++.|-..+.. .++++..++-|... +..+++-++..|+|||.++.|+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence 4566677666655 889999999999999999999888888 89999999999999 88899999999999999999999
Q ss_pred HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHh
Q 015939 258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALS 303 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~ 303 (398)
.|++++++|.++..++ ++...++-.|+.+|..|+-.+ ..|..+.
T Consensus 94 ~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 9999999999999995 466778889999999998744 4566666
No 67
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.44 E-value=8.2e-05 Score=80.31 Aligned_cols=231 Identities=13% Similarity=0.055 Sum_probs=131.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.|++.|..++.+ .+..|+..|..+.... ...+.|...|++ . +..++..|+.+|..+...+.
T Consensus 653 ~~~~L~~aL~D~d~~--VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~~-~--d~~VR~~A~~aL~~~~~~~~ 716 (897)
T PRK13800 653 FGPALVAALGDGAAA--VRRAAAEGLRELVEVL-----------PPAPALRDHLGS-P--DPVVRAAALDVLRALRAGDA 716 (897)
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHHHhcc-----------CchHHHHHHhcC-C--CHHHHHHHHHHHHhhccCCH
Confidence 355666666555443 7777777776653210 122445555555 2 33455666666654321100
Q ss_pred ---------hHHHhhHhh---hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc
Q 015939 166 ---------VKEKLNRLI---LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA 233 (398)
Q Consensus 166 ---------~~~~~~~~i---l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~ 233 (398)
.....|... +..-+..+.|..+|.+.+.++|..++.+|..+... . ...++.|..++++.
T Consensus 717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~ 787 (897)
T PRK13800 717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDP 787 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCC
Confidence 000011110 11112233444555555555555555555544332 1 22356777777777
Q ss_pred cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHH
Q 015939 234 EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVV 313 (398)
Q Consensus 234 ~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv 313 (398)
++.++..|+.+|.++.... ..+..++..|. ++++.++..|+.+|..+.. ...++.|+
T Consensus 788 -d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~ 844 (897)
T PRK13800 788 -DPLVRAAALAALAELGCPP---------DDVAAATAALR--ASAWQVRQGAARALAGAAA-----------DVAVPALV 844 (897)
T ss_pred -CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--CCChHHHHHHHHHHHhccc-----------cchHHHHH
Confidence 6777777777777763321 12245666774 3567777777777765532 34567888
Q ss_pred HHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 314 ERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 314 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
.+|.+.+..++..|+.+|..+. +++. ..+.|...++.. +..+|+.|...|.
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~---~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWP---GDPA---------ARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccC---CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 8999999999999999997762 1122 244555666644 8899999988875
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=98.42 E-value=3.3e-05 Score=78.11 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=160.8
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-------ChhhHHHHHHHH
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-------NLDSKIGSIKIL 203 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L 203 (398)
.++.-+.+|+. .+... +-.++-.+.++..+++.....++. +.++=+.+.|-++|+++ ....+.-|+.+|
T Consensus 6 ~l~~c~~lL~~-~~D~~--rfagL~lvtk~~~~~~~~~~~~~~-v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKS-ADDTE--RFAGLLLVTKLLDADDEDSQTRRR-VFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhcc-CCcHH--HHHHHHHHHHcCCCchhhHHHHHH-HHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 35556778877 44233 367777777787766543334445 44665679999999874 345677788899
Q ss_pred HHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHH
Q 015939 204 DSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVE 283 (398)
Q Consensus 204 ~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~ 283 (398)
..++.+++.+..-.- .+-||.|++++.+..+.+....+..+|..++..++.+..+++.|+|+.|.+++.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~-~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQM-VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---CcchHH
Confidence 999998765422211 4579999999998844489999999999999999999999999999999999963 677889
Q ss_pred HHHHHHHHHhCCHHHHHHHhhcc----CcHHHHHHHHhccChhHHHHHHHHHHHhhccCC---ChhHHHHHHhcCCHHHH
Q 015939 284 KSIKMLSIVATCSEGRLALSEEA----SCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK---DARVKEAVVNSNGLTKL 356 (398)
Q Consensus 284 ~al~~L~~La~~~~~~~~i~~~~----g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~g~~~~L 356 (398)
.|+.+|.++..... ....-++. ..++.+-..+.......+-..+..|..+-...+ .......---..+..-+
T Consensus 158 ~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 158 IALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence 99999999876333 11111122 234444444444555666677777777655431 00011111112234445
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 357 LLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 357 l~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..+|++.-++.-|..|..+...|-+
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6666777677888887766665555
No 69
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.1e-07 Score=96.21 Aligned_cols=74 Identities=34% Similarity=0.405 Sum_probs=68.0
Q ss_pred cccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 4 QELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
++.+.++|++|..|+...+|+|||++| +|++.||+.|++++-. ..+.|.||++|....+.||..++..|..|..
T Consensus 861 ee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 861 EEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred HHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence 445678999999999999999999999 9999999999999864 5678999999999999999999999999973
No 70
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=6e-05 Score=79.18 Aligned_cols=262 Identities=13% Similarity=0.103 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 103 SCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
.-..+++.|-.++...+.. +..+. .++..-+.+.++ .+-+..++..|+..|..++...+. .+|+.--.-...+
T Consensus 222 ~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~--~~k~~~~~~~~lv 295 (1075)
T KOG2171|consen 222 AAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPA--MCKKLALLGHTLV 295 (1075)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHH--HhhhchhhhccHH
Confidence 3456677777777555543 44444 356666777766 444556678999999888876332 2233211122345
Q ss_pred HHHHHHHhcCC----------------hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 182 PLFLEILREGN----------------LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 182 ~~Lv~lL~~~~----------------~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
+.++.++.... ......|..+|-.++.+-..+..+ .-.++.+-.+|.+. +..-+.+++.+
T Consensus 296 ~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~-~w~~R~AaL~A 371 (1075)
T KOG2171|consen 296 PVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQST-EWKERHAALLA 371 (1075)
T ss_pred HHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 55555543221 113456777777777763333332 44677777888888 89999999999
Q ss_pred HHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhc-cCh
Q 015939 246 LITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMK-VGK 321 (398)
Q Consensus 246 L~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~-~~~ 321 (398)
|..++.+. +.-....+ .+++.++..|. ++++.|+..|+.++..++. .++..+..- +-.++.|+..+.+ .++
T Consensus 372 ls~i~EGc~~~m~~~l~-~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~--e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLP-KILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHH--ERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHcccHHHHHHHHH-HHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH--HhccHHHHHHhcccCch
Confidence 99997543 33333333 36777888884 5899999999999999998 444444443 4678889998876 788
Q ss_pred hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+++.+|+.+|.+..-... .+...-- =-+.+.+++..|..++++.+|+.+...+.-.+.
T Consensus 447 rV~ahAa~al~nf~E~~~-~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECD-KSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 999999999999875421 1111111 145666566666556699999999988877766
No 71
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.2e-08 Score=89.50 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=59.2
Q ss_pred cCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCC-CCcccHHHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRLIAHWS 77 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~ 77 (398)
..+-.+|.||||+.+++.-++++ |+|.||+.||-+-+..|...||.||+.+... .+.++..+-.+|....
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 34556789999999999999997 9999999999999988899999999998754 6776666677776654
No 72
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.37 E-value=0.00013 Score=74.25 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=169.5
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
+.+.+.+.+++.. .+..|+.++.++.+.+++. +. . +.++.+..+|.+ .+ +.++..|+.++..+ ...+.
T Consensus 117 ~~v~~ll~~~~~~--VRk~A~~~l~~i~~~~p~~---~~-~-~~~~~l~~lL~d-~~--~~V~~~a~~~l~~i-~~~~~- 184 (526)
T PF01602_consen 117 PDVIKLLSDPSPY--VRKKAALALLKIYRKDPDL---VE-D-ELIPKLKQLLSD-KD--PSVVSAALSLLSEI-KCNDD- 184 (526)
T ss_dssp HHHHHHHHSSSHH--HHHHHHHHHHHHHHHCHCC---HH-G-GHHHHHHHHTTH-SS--HHHHHHHHHHHHHH-HCTHH-
T ss_pred HHHHHHhcCCchH--HHHHHHHHHHHHhccCHHH---HH-H-HHHHHHhhhccC-Cc--chhHHHHHHHHHHH-ccCcc-
Confidence 3444555655543 8888999999988775542 22 1 157888899877 44 56779999999888 11111
Q ss_pred HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILI 247 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 247 (398)
...-.-...++.|.+++...++-.+.....+|..++..+.....- ...++.+..+|++. ++.++-.++.++.
T Consensus 185 ----~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 185 ----SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLII 256 (526)
T ss_dssp ----HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ----hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHH
Confidence 110001233555555556678888888888888887764322211 45788888888887 8889999999999
Q ss_pred HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh-ccChhHHHH
Q 015939 248 TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM-KVGKTARED 326 (398)
Q Consensus 248 ~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~-~~~~~~~~~ 326 (398)
.+..... .-..+++.|+.++. +.++.++..++..|..++... ...+. .....+..+. +.+..++..
T Consensus 257 ~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~~--~~~v~----~~~~~~~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 257 KLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQSN--PPAVF----NQSLILFFLLYDDDPSIRKK 323 (526)
T ss_dssp HHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCHC--HHHHG----THHHHHHHHHCSSSHHHHHH
T ss_pred HhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhccc--chhhh----hhhhhhheecCCCChhHHHH
Confidence 8887666 33347889999995 478889999999999998843 22222 1233444555 688899999
Q ss_pred HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++.+|..++. +..... +++.|...+...++...++.+...+..+..
T Consensus 324 ~l~lL~~l~~----~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 324 ALDLLYKLAN----ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHHHHH------HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccc----ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 9999999996 345444 566788888544467788888777766665
No 73
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.36 E-value=7.9e-06 Score=65.14 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=123.5
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~ 299 (398)
.+-+..||.=..+..+.++++....=|.|++-++-|...+-+.++++..+.-|. ..+..+++-+.+.|+|+|..+.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhccChHHH
Confidence 456777777777666899999999999999999999999999999999999994 478999999999999999999999
Q ss_pred HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
+.|+ +++++|.++..+.+....+...|+..|.-|+... +..+.++..-.++..+.+.-.+. +...|--|...|+.
T Consensus 93 ~~I~-ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIR-EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--RTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK 167 (173)
T ss_pred HHHH-HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc--cchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9999 5799999999998888888999999999998753 56777777766665554433222 34455555555543
No 74
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.36 E-value=8.1e-06 Score=80.70 Aligned_cols=153 Identities=12% Similarity=0.191 Sum_probs=117.8
Q ss_pred cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHH
Q 015939 190 EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQI 267 (398)
Q Consensus 190 ~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~ 267 (398)
..+...+..|+.++.+++.. ...+.-+ ++..+..+||.+|.++ +..+...++.+|.||.. ..+.+..+.+.|+|+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 34667777777778888776 4444443 4477899999999888 78899999999999985 5678999999999999
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhCCHHH-H-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHH
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVATCSEG-R-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKE 345 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~-~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 345 (398)
+.+++. +.+..++..++++|+++.-+.+. + .+.... =....++.+..+.+..+||.+..+|.|+.+++ ++.+.
T Consensus 466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~--~~svd 540 (678)
T KOG1293|consen 466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPANLILDLINDPDWAVQEQCFQLLRNLTCNS--RKSVD 540 (678)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc--HHHHH
Confidence 999994 47889999999999999764433 2 333321 23455777778899999999999999999864 45554
Q ss_pred HHHh
Q 015939 346 AVVN 349 (398)
Q Consensus 346 ~~~~ 349 (398)
-+++
T Consensus 541 fll~ 544 (678)
T KOG1293|consen 541 FLLE 544 (678)
T ss_pred HHHH
Confidence 4444
No 75
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00026 Score=74.56 Aligned_cols=265 Identities=12% Similarity=0.083 Sum_probs=165.7
Q ss_pred HcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcC-CcHHHHHHHhhhc-cC----------C-c-HHHHHHHHHHHHhh
Q 015939 95 KSENESENSCVDYLVKVAKFATGCEANRRFLASYG-GFVEAVFGVLNRK-RR----------S-E-IAVLESAVRVLNLI 160 (398)
Q Consensus 95 ~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~-g~v~~L~~lL~~~-~~----------~-~-~~~~~~al~~L~~l 160 (398)
++.+.+...|..|+.-|..+++.-+...+...... -.++.++.+...- .| . + ..--..|..+|-.+
T Consensus 257 ~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl 336 (1075)
T KOG2171|consen 257 KNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL 336 (1075)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Confidence 44444445778888888888766454443333330 2355555554321 01 0 0 00113445555555
Q ss_pred hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939 161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND 240 (398)
Q Consensus 161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 240 (398)
+.+-+. + .+-+-.++.+-.+|.+.++.-|..+..+|..++..- .+.+...-..+++..+..|.++ +|.++.
T Consensus 337 A~~L~g-----~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~ 407 (1075)
T KOG2171|consen 337 ALHLGG-----K--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDP-HPRVRY 407 (1075)
T ss_pred HhcCCh-----h--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 544333 1 123456777778888999999999999999998872 2223333357889999999999 999999
Q ss_pred HHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CH-HHHHHHhhccCcHHHHHH-HH
Q 015939 241 AILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CS-EGRLALSEEASCAGRVVE-RV 316 (398)
Q Consensus 241 ~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~-~~~~~i~~~~g~v~~Lv~-~l 316 (398)
+|+.++..++.+- ..-.+-...-..+.|+..+.+ ...++++..|..+|-|++. ++ +...... + +.+..++. ++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d-~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKSILEPYL-D-GLMEKKLLLLL 484 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHHHHHHHH-H-HHHHHHHHHHh
Confidence 9999999999754 344444555578899999974 5677999999999999875 22 2222233 2 44443333 34
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD 374 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~ 374 (398)
.++++.+++.++.+|+.++...+ ....... .-.+|.|...|++..+...|.-..+
T Consensus 485 ~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~Lrgk 539 (1075)
T KOG2171|consen 485 QSSKPYVQEQAVTAIASVADAAQ-EKFIPYF--DRLMPLLKNFLQNADDKDLRELRGK 539 (1075)
T ss_pred cCCchhHHHHHHHHHHHHHHHHh-hhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhh
Confidence 56899999999999999986432 1222211 2356777777776644444443333
No 76
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.1e-07 Score=80.83 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=45.6
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHH-HHhcCCCCCCcccccCCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQH-WLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~-~~~~~~~~CP~~~~~l~~~~ 62 (398)
..+|.|+||.+.+.+|+-++|||.||-.||-. |..+....||.||+...+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 37899999999999999999999999999999 77665667999998766554
No 77
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-06 Score=85.47 Aligned_cols=73 Identities=33% Similarity=0.435 Sum_probs=66.4
Q ss_pred cccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 4 QELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
++...++|++|..|+.-.+|+|||++| +|-+.+|+.|..++-. ..+.|.-|.||+.++++||..|++-|-.|.
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~ 918 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFY 918 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHH
Confidence 445678999999999999999999998 9999999999999864 457899999999999999999999998885
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=98.20 E-value=4.3e-05 Score=77.30 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=120.4
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCch----hHHHhhchhhHHHHHHHHhcccc------CHHHHHHHHHHHHHh
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNE----SKRRVLETENLLSALFDYLKLAE------DQALNDAILSILITL 249 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~aL~~L 249 (398)
.+...+.+|+..+.+-|-.+...+..+..+++ .+..+.+.-| .+.|-++|+++. ....+.-|+.+|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46777888888887778888888888887743 2334555344 688999999841 245678889999999
Q ss_pred cCCcchH--HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939 250 SVYRSVK--AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA 327 (398)
Q Consensus 250 s~~~~~~--~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a 327 (398)
|..++.. ..|+ +-||.|++++.. .++..+...|+.+|..++.+++|++.+. ..|+++.|++.+.+ ++...+.|
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHH
Confidence 9977643 4444 479999999964 2334999999999999999999999999 46999999999887 77779999
Q ss_pred HHHHHHhhccC
Q 015939 328 VVVIWSMCCVY 338 (398)
Q Consensus 328 ~~~L~~l~~~~ 338 (398)
+.+|.+++...
T Consensus 160 l~lL~~Lls~~ 170 (543)
T PF05536_consen 160 LNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 79
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.19 E-value=0.0004 Score=69.05 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHH
Q 015939 235 DQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRV 312 (398)
Q Consensus 235 ~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~L 312 (398)
|...+.+|+.++.+++..- .-+.-+-+..++.+|++++. .++..+...++++|.|+.. -..-+..+.. .|+|..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l 466 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDIL 466 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHH
Confidence 4456667777777775432 22333446678999999994 4788999999999999987 4456777774 5999999
Q ss_pred HHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 313 VERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 313 v~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+++.+.+...+..++++|.++.... .+......-..+...++..+-++.+..+++.+-.+||+|--
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~--de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNC--DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcc--hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999864 34444444444555566666667689999999999998865
No 80
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.17 E-value=0.00061 Score=65.65 Aligned_cols=265 Identities=13% Similarity=0.098 Sum_probs=187.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
+.+..+...++.+..+ +..-+.+.+. +.--.++..|.. ......-+++|++.+..+..-..+ .+. ...|++
T Consensus 40 ~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~----~~~--~~~~vv 110 (371)
T PF14664_consen 40 EVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKG----PKE--IPRGVV 110 (371)
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCC----ccc--CCHHHH
Confidence 4788888899888866 5566677777 777777777766 333333468999999887754332 122 256889
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE 261 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~ 261 (398)
..++.+..+.+...+..|..+|..|+..+ -..+.. .||+..|++.+.++ ..+..+..+.++..+-..++.|+.+..
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~-~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLN--PELVAE-CGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH-cCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 99999999998999999999999998752 233444 78999999999886 566888899999999888888876654
Q ss_pred cCChHHHHHHhccc-----Ccch--hhHHHHHHHHHHHhCCHHHHHHHhhcc-CcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 262 LGMVQILTRILSDS-----RTQI--LTVEKSIKMLSIVATCSEGRLALSEEA-SCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 262 ~g~v~~Lv~lL~~~-----~~~~--~~~~~al~~L~~La~~~~~~~~i~~~~-g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
.--+..++.-..+. .++. +-...+..++..+-.+..|--.+..+. .++..||..|...++++++..+.++..
T Consensus 187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33355555555332 1122 345566666677666677766665332 578889988888888888888887755
Q ss_pred hhccC-----------------C-------------------------Chh--------HHHHHHhcCCHHHHHHHHhhc
Q 015939 334 MCCVY-----------------K-------------------------DAR--------VKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 334 l~~~~-----------------~-------------------------~~~--------~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
+-.-. + ..+ .....++.|.++.|+.++.+.
T Consensus 267 llrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~ 346 (371)
T PF14664_consen 267 LLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESS 346 (371)
T ss_pred HHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcC
Confidence 41000 0 000 234457899999999999888
Q ss_pred CcHHHHHHHHHHHHHH
Q 015939 364 NEGIVRKMCGDLVKVL 379 (398)
Q Consensus 364 ~~~~~k~~A~~lL~~l 379 (398)
.++....||.-+|..+
T Consensus 347 ~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 347 EDSSLSRKATLLLGEL 362 (371)
T ss_pred CCchHHHHHHHHHHHH
Confidence 7889999998887654
No 81
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.15 E-value=2.2e-06 Score=62.23 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=34.7
Q ss_pred CCCCcccccCccccCCCc-------------eecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939 9 AVPNLFRCPISLDVMKSP-------------VSLCTGVTYDRSSIQHWLESGHDTCPATM 55 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~ 55 (398)
++.++- |+||++.|.|| +..+|||.|-..||++|+.. ..+||.||
T Consensus 16 ~~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 16 DIADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SSCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 344443 99999999444 34579999999999999975 45999996
No 82
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.9e-06 Score=82.37 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=58.7
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC-----CcccHHHHHHHHHHHhh
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE-----FVPNLTLHRLIAHWSHQ 79 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~ 79 (398)
+....+..+|.|-+|...+.+||+++|||+||+.||.+..+. ...||.|+.++.... ..+|+.+..+|..|+..
T Consensus 76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 445677899999999999999999999999999999997773 678999999887532 12355556666666643
No 83
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.1e-07 Score=89.46 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=50.0
Q ss_pred CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (398)
+..-++||.|.+=.+|-|++.|||.||-.||+.......+.||.|+.+|...|+.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34556899999999999999999999999999999877889999999998887654
No 84
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.10 E-value=0.00048 Score=65.22 Aligned_cols=223 Identities=12% Similarity=0.118 Sum_probs=160.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
+.+.-++.+|+.+... +++|..+..+ +++..++..|.+ +..+.+++-+.+-++..|..+..-. +. +...+.|
T Consensus 172 ~~~~~~~rcLQ~ll~~-~eyR~~~v~a-dg~~~l~~~l~s-~~~~~QlQYqsifciWlLtFn~~~a----e~-~~~~~li 243 (442)
T KOG2759|consen 172 DYIQFAARCLQTLLRV-DEYRYAFVIA-DGVSLLIRILAS-TKCGFQLQYQSIFCIWLLTFNPHAA----EK-LKRFDLI 243 (442)
T ss_pred chHHHHHHHHHHHhcC-cchhheeeec-CcchhhHHHHhc-cCcchhHHHHHHHHHHHhhcCHHHH----HH-HhhccHH
Confidence 4677788899998877 7899999988 889999988854 4556788899999999999876652 33 5677999
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHhhcCc-------hhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHH-------
Q 015939 182 PLFLEILREG-NLDSKIGSIKILDSISLDN-------ESKRRVLETENLLSALFDYLKLA--EDQALNDAILS------- 244 (398)
Q Consensus 182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~-------~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~------- 244 (398)
+.|.++++.. -..+-.-.+.++.|+.... +.+..++. +.++.-+..|+.. +|++.+...-.
T Consensus 244 ~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~--~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~ 321 (442)
T KOG2759|consen 244 QDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL--CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN 321 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh--cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999977 4445556777788887664 33344443 4456666666643 45544433222
Q ss_pred HHHHhcCCcc------------------------hHHHHHH--cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHH
Q 015939 245 ILITLSVYRS------------------------VKAQLVE--LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSE 297 (398)
Q Consensus 245 aL~~Ls~~~~------------------------~~~~~v~--~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~ 297 (398)
-...||+.++ |...+-+ ...+..|+.+|.. +.||.+...|+-=+..... .|+
T Consensus 322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~-s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET-SNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc-CCCCceeehhhhhHHHHHHhCch
Confidence 1223343333 2333321 2368889999973 5678888888877777766 889
Q ss_pred HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 298 GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 298 ~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
++.-+. .-|+=..+.++|...++.++-+|+.++..+..
T Consensus 401 gk~vv~-k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 401 GKAVVE-KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhHHHH-HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 998887 56999999999999999999999999987754
No 85
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.10 E-value=0.00024 Score=67.90 Aligned_cols=265 Identities=14% Similarity=0.175 Sum_probs=171.7
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..|++.+.+++.+...++++.+.|..+.. .+||+.++.. | ...++.+-+. . ..++.....+.+|.++..+++.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~-~-e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKE-R-EPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhh-c-CcHHHHHHHHHHHHHHhhhhHH
Confidence 456788888877653357888888887653 4688888887 6 5666666654 2 2345568888999999887664
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
- -.. ++..|++..++-..+..++.+..+++.+|.|++.. .+.+..+++ ..+-+-|+-+-.+. |.-.+-.|+-
T Consensus 256 t---~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~sk-Del~R~~ACl 329 (832)
T KOG3678|consen 256 T---CQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSK-DELLRLHACL 329 (832)
T ss_pred H---HHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcch-HHHHHHHHHH
Confidence 2 234 67899999999998999999999999999999887 456666665 45556667666666 6778889999
Q ss_pred HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
+...|+.+.+.-..+-..|.+..+-.++.+ -||. ..+.+ ....-.....-+..|+-+|.+. ..
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~--~DP~~FARD~------------hd~aQG~~~d~LqRLvPlLdS~--R~ 393 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVAS--LDPGRFARDA------------HDYAQGRGPDDLQRLVPLLDSN--RL 393 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhc--cCcchhhhhh------------hhhhccCChHHHHHhhhhhhcc--hh
Confidence 999999988876666566665544444432 2332 22211 1111111123355677777632 22
Q ss_pred HHHHHHHHHHhhccC--CChhHH-HHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 324 REDAVVVIWSMCCVY--KDARVK-EAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~--~~~~~~-~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
...++.+.+ +|... .....+ ...-+-|+|+.|-.+..+. ++..-+-|..+|..+.+
T Consensus 394 EAq~i~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 394 EAQCIGAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhhhHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 233333332 12110 001222 2334578888888877754 67777888999999998
No 86
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.09 E-value=9.8e-07 Score=80.27 Aligned_cols=69 Identities=14% Similarity=0.285 Sum_probs=56.8
Q ss_pred ccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCC----CcccHHHHHHHHHH
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKE----FVPNLTLHRLIAHW 76 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l~~~i~~~ 76 (398)
..++-...+|++|+.+|.|+-|+. |=|||||+||-+++.. ..+||.|...+.... +.++.++.+++-..
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 346667889999999999999987 9999999999999987 789999998877654 45666776666544
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.07 E-value=0.0033 Score=59.75 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939 149 VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSAL 226 (398)
Q Consensus 149 ~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L 226 (398)
...-++++|..+...++. |-. ++.+.++..++..|.++ +..++-+.+.+++.|+.++...+.+.. .+.|+.|
T Consensus 173 ~~~~~~rcLQ~ll~~~ey----R~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L 246 (442)
T KOG2759|consen 173 YIQFAARCLQTLLRVDEY----RYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDL 246 (442)
T ss_pred hHHHHHHHHHHHhcCcch----hhe-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHH
Confidence 446678888888887765 555 67788889999998433 888999999999999999888877744 8899999
Q ss_pred HHHhccccCHHHHHHHHHHHHHhcCCc-------chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH-------HHHH
Q 015939 227 FDYLKLAEDQALNDAILSILITLSVYR-------SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM-------LSIV 292 (398)
Q Consensus 227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~-------~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~-------L~~L 292 (398)
++++++..-.++.+-.+.++.|+.... +....|+..++.+.+-.+....-+|+++...---+ ...|
T Consensus 247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~L 326 (442)
T KOG2759|consen 247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDL 326 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999998867789999999999997544 44566777666555555544333456555332221 2223
Q ss_pred hCCHHHHHHHh------------------------hc-cCcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChhHHHH
Q 015939 293 ATCSEGRLALS------------------------EE-ASCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDARVKEA 346 (398)
Q Consensus 293 a~~~~~~~~i~------------------------~~-~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~ 346 (398)
++-++-..++. ++ --.+..|+++|+.+ ++..-.-|+.=+.....+. ++.+..
T Consensus 327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y--P~gk~v 404 (442)
T KOG2759|consen 327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY--PEGKAV 404 (442)
T ss_pred ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC--chHhHH
Confidence 43333333332 11 12577888888864 4666666776677777665 678888
Q ss_pred HHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 347 VVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 347 ~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.+-||=+.+..+|... ++++|-.|..+++.|=-
T Consensus 405 v~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 405 VEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence 89999999999999877 89999999888877643
No 88
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.1e-06 Score=81.40 Aligned_cols=54 Identities=24% Similarity=0.495 Sum_probs=47.2
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhc----CCCCCCcccccCCCCCCccc
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES----GHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~----~~~~CP~~~~~l~~~~l~~n 66 (398)
+..||||.....=|+.+.|||.||=.||-++|.. +...||.|+..+...++.|-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 7789999999999999999999999999998864 34679999998888776554
No 89
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.01 E-value=9.3e-06 Score=51.83 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=37.0
Q ss_pred CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
+++++..+++.|+||.|+.+|. +.++++++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence 3578899999999999999995 5899999999999999974
No 90
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.97 E-value=5.9e-06 Score=80.04 Aligned_cols=69 Identities=25% Similarity=0.440 Sum_probs=55.0
Q ss_pred ccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc-cHHHHHHHHHH
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP-NLTLHRLIAHW 76 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~i~~~ 76 (398)
...+.+++.||+|..++.||+.. .|||.||+.||..|... ...||.|+..+......+ ...+++.+..|
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 34567889999999999999995 89999999999999987 789999988877665544 23345555544
No 91
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.96 E-value=0.0015 Score=64.70 Aligned_cols=264 Identities=13% Similarity=0.090 Sum_probs=170.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHh--------hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCC
Q 015939 108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVL--------NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYN 179 (398)
Q Consensus 108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL--------~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g 179 (398)
+.+|+.+.++ +.+...+... .++..|+.+- .. ...+..+..+|+++|.|+...++. .|.. ..+.|
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~-~~~~~~v~~EALKCL~N~lf~s~~---aR~~-~~~~~ 74 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTE-EGLSTLLKHAGLSESDEDEF-ESPDPDVSREALKCLCNALFLSPS---ARQI-FVDLG 74 (446)
T ss_pred HHHHHHHccC-cccchhhccH-HHHHHHHHhcCCcccccccc-cCCChHHHHHHHHHHHHHHhCCHH---HHHH-HHHcC
Confidence 4566666655 5555555555 5677777665 11 234566779999999999988776 3544 77899
Q ss_pred ChHHHHHHHhcC-----ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc----------------cCHH
Q 015939 180 CLPLFLEILREG-----NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA----------------EDQA 237 (398)
Q Consensus 180 ~i~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~----------------~~~~ 237 (398)
..+.+++.|+.. +.+......++|..++.. .+.+..+....+++..|+..|... .+..
T Consensus 75 ~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~ 154 (446)
T PF10165_consen 75 LAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEE 154 (446)
T ss_pred cHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHH
Confidence 999999999987 788888999999988765 677777776577888887766421 1445
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhccc-------CcchhhHHHHHHHHHHHhCC-HHH-------HHHH
Q 015939 238 LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDS-------RTQILTVEKSIKMLSIVATC-SEG-------RLAL 302 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~-------~~~~~~~~~al~~L~~La~~-~~~-------~~~i 302 (398)
....++++++|+.........--+.+.++.|+.++..- .+-......+..+|.|+--. ... ...+
T Consensus 155 ~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~ 234 (446)
T PF10165_consen 155 ALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSL 234 (446)
T ss_pred HHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccc
Confidence 67889999999965433222212345566666665421 12234556677777776321 111 0000
Q ss_pred ---hhccCcHHHHHHHHhc----cC-h---hHHHHHHHHHHHhhccCCChhHHHHHHh----------------cCCHHH
Q 015939 303 ---SEEASCAGRVVERVMK----VG-K---TAREDAVVVIWSMCCVYKDARVKEAVVN----------------SNGLTK 355 (398)
Q Consensus 303 ---~~~~g~v~~Lv~~l~~----~~-~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~----------------~g~~~~ 355 (398)
..+...+..|+.+|.. .. . ..-.--+.+|.+++..+ +..+..+.. ...-.+
T Consensus 235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~r 312 (446)
T PF10165_consen 235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSR 312 (446)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHH
Confidence 1123467888888865 11 1 22334455666666543 344444332 345678
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 356 LLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 356 Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|+++|.+.. +.+|..++.+|..|++
T Consensus 313 LlrLmt~~~-~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 313 LLRLMTSPD-PQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHhCCCC-chHHHHHHHHHHHHHh
Confidence 888887764 9999999999999987
No 92
>PTZ00429 beta-adaptin; Provisional
Probab=97.96 E-value=0.0025 Score=66.73 Aligned_cols=254 Identities=11% Similarity=0.024 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+++..+-+.|.+.+.. .+..+++.+-.....+...-. +.+-++.++.+ . +.+...-.--.|.+.+..
T Consensus 31 kge~~ELr~~L~s~~~~--~kk~alKkvIa~mt~G~DvS~-------LF~dVvk~~~S-~--d~elKKLvYLYL~~ya~~ 98 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSY--RKKAAVKRIIANMTMGRDVSY-------LFVDVVKLAPS-T--DLELKKLVYLYVLSTARL 98 (746)
T ss_pred cchHHHHHHHHHCCCHH--HHHHHHHHHHHHHHCCCCchH-------HHHHHHHHhCC-C--CHHHHHHHHHHHHHHccc
Confidence 34677777888776654 678888877766545433222 23344666665 3 344335444455556543
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
.++ ..+ -++..+.+-+.+.++.+|..|+++|..+-.. .+. .-.++++.+.|.+. ++-+++.|+
T Consensus 99 ~pe-----lal----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~-~pYVRKtAa 161 (746)
T PTZ00429 99 QPE-----KAL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADP-DPYVRKTAA 161 (746)
T ss_pred ChH-----HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCC-CHHHHHHHH
Confidence 333 121 2577778888888999999888888876552 122 23567778888887 899999999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
-++..+-..... .+.+.|.++.|.++|. +.++.++.+|+.+|..+.......-.+. .+.+..++..+...++..
T Consensus 162 lai~Kly~~~pe--lv~~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~ 235 (746)
T PTZ00429 162 MGLGKLFHDDMQ--LFYQQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWG 235 (746)
T ss_pred HHHHHHHhhCcc--cccccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHH
Confidence 999998653332 2346788899999994 5899999999999999976322222222 255677777777778888
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
|-..+.+|....-.. ..-. ...+..+...|++. ++.+.-.|.+++-.+.
T Consensus 236 Qi~IL~lL~~y~P~~--~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 236 QLYILELLAAQRPSD--KESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHhcCCCC--cHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Confidence 887777774422111 1111 23444555555554 4555455544444433
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.95 E-value=1.6e-05 Score=50.68 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.9
Q ss_pred CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
+++++..+.+ .|++++|+.+|++. ++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 3578888888 89999999999988 99999999999999973
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.95 E-value=1.9e-05 Score=74.20 Aligned_cols=51 Identities=27% Similarity=0.456 Sum_probs=45.2
Q ss_pred ccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939 14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (398)
+.|.|++++-++||+.+ +||.|+|.-|++++.+ +..||+++++|+.+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 46999999999999998 9999999999999986 667999999988766544
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=9.5e-06 Score=72.37 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=51.0
Q ss_pred ccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccc-cCCCCCCcccHHHHHHHHHHH
Q 015939 14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQ-ILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~-~l~~~~l~~n~~l~~~i~~~~ 77 (398)
+.||+|+.++++|+-++ |||+||.+||+..+-+....||.|.. .+--+.+.|+...+.-++.+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~l 340 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKAL 340 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHH
Confidence 78999999999999995 99999999999988655778999954 233345677776666666654
No 96
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.001 Score=65.91 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=138.0
Q ss_pred CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
|+.++.+..+|.+.++....+++.|..+...+...-.. ..-.-.+|.++.-+....+..+..++..|..++.
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~--------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA--------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc--------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35677777777764444445555555554443321111 0112345666666665577888999999998888
Q ss_pred CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHHH
Q 015939 209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSIK 287 (398)
Q Consensus 209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~ 287 (398)
.........- ..++|.|...|.+. .+++++++..+|..+++--+|.. +.. .+|.|++-+.+ +. -...++.
T Consensus 284 ~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d--I~~-~ip~Lld~l~d----p~~~~~e~~~ 354 (569)
T KOG1242|consen 284 CAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD--IQK-IIPTLLDALAD----PSCYTPECLD 354 (569)
T ss_pred hchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH--HHH-HHHHHHHHhcC----cccchHHHHH
Confidence 7444444444 68999999999998 89999999999999987655543 111 57888888853 32 3344444
Q ss_pred HHHHHhCCHHHHHHHhhccCcHHHHHHHHh----ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 288 MLSIVATCSEGRLALSEEASCAGRVVERVM----KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 288 ~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
.|..-.-- +.+ ++-.+..++-++. ..+...++.++.+.+|+|.--.|+....-.+.. .+|.+-..+..-
T Consensus 355 ~L~~ttFV-----~~V-~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 355 SLGATTFV-----AEV-DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDA 427 (569)
T ss_pred hhcceeee-----eee-cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCC
Confidence 44332211 111 2233444444444 468888899999999999865443333322221 344444444444
Q ss_pred CcHHHHHHHHHHH
Q 015939 364 NEGIVRKMCGDLV 376 (398)
Q Consensus 364 ~~~~~k~~A~~lL 376 (398)
.+++|.-|+.+|
T Consensus 428 -~PEvR~vaarAL 439 (569)
T KOG1242|consen 428 -VPEVRAVAARAL 439 (569)
T ss_pred -ChhHHHHHHHHH
Confidence 689999988888
No 97
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0068 Score=63.57 Aligned_cols=262 Identities=13% Similarity=0.154 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhh----cCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLAS----YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY 178 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~----~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~ 178 (398)
...-++.+|+++.+.++.....+.. . |-.+.+..+|....+ .+++.-|+.++..+..+.+- ... ++..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~li-g~F~l~~~~lr~~~~--~~iq~LaL~Vi~~~Tan~~C----v~~-~a~~ 1812 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLI-GNFPLLITYLRCRKH--PKLQILALQVILLATANKEC----VTD-LATC 1812 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhh-cccHHHHHHHHHcCC--chHHHHHHHHHHHHhcccHH----HHH-HHhh
Confidence 4566889999999887743332221 2 667888888877444 35568899999888776664 344 7788
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc----c
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR----S 254 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~----~ 254 (398)
|++..|+.+|++. +..|+.+..+|..|+++.+....-.. +|++..+..++-...+++.+.+++..+..|..++ .
T Consensus 1813 ~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr 1890 (2235)
T KOG1789|consen 1813 NVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR 1890 (2235)
T ss_pred hHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc
Confidence 8999999999865 57789999999999999876666666 7877777776655546667777777777664322 1
Q ss_pred hHHHHH-----------HcC------------------------------------------------------------
Q 015939 255 VKAQLV-----------ELG------------------------------------------------------------ 263 (398)
Q Consensus 255 ~~~~~v-----------~~g------------------------------------------------------------ 263 (398)
.+..++ +.|
T Consensus 1891 V~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1891 VTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred eeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence 100000 000
Q ss_pred ---------------------------------ChHHHHHHhcccCcchhhHHH-HHHHHHHHhCCHHHHHHHhhccCcH
Q 015939 264 ---------------------------------MVQILTRILSDSRTQILTVEK-SIKMLSIVATCSEGRLALSEEASCA 309 (398)
Q Consensus 264 ---------------------------------~v~~Lv~lL~~~~~~~~~~~~-al~~L~~La~~~~~~~~i~~~~g~v 309 (398)
.++.++++|..++......+. .......+..+|.-...+- +-|.+
T Consensus 1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip-~LGyl 2049 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLP-SLGYL 2049 (2235)
T ss_pred hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCC-Cccch
Confidence 112222222211111111111 2222233334666666666 67999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 310 GRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 310 ~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
|.++..+.-.+...-..|+++|+.|+.+ .-+.+.|.+...+..++..|... ...-.-|+..|+.+-
T Consensus 2050 PK~~~Am~~~n~s~P~SaiRVlH~Lsen---~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~ 2115 (2235)
T KOG1789|consen 2050 PKFCTAMCLQNTSAPRSAIRVLHELSEN---QFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLM 2115 (2235)
T ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHhhc---cHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHH
Confidence 9999999876666668999999999964 57888888888888888887654 233345666665543
No 98
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.84 E-value=7e-06 Score=68.88 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
|.|-||.+-++.||++.|||.||-.|..+-... .+.|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence 899999999999999999999999998777664 567999987543
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.83 E-value=0.00016 Score=54.42 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=68.6
Q ss_pred hHHHHHHH-hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 181 LPLFLEIL-REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 181 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
|+.|++.| ++.++.+|..++.+|..+ .. ..+++.|+.+++++ ++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence 57899999 677999999999999822 22 46799999999887 9999999999999872
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLS 290 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~ 290 (398)
+..+++.|.+++.+ +.+..++..|..+|.
T Consensus 60 -~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 34489999999964 345566777877763
No 100
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.033 Score=53.37 Aligned_cols=246 Identities=17% Similarity=0.153 Sum_probs=167.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH------HHhhHhhhccCC
Q 015939 106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK------EKLNRLILNTYN 179 (398)
Q Consensus 106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~------~~~~~~il~~~g 179 (398)
..++.+..++.. |..--.+++. ++|+.|+.+|.+ .+.++ .-..+..|..|...+-.. +..-.. +++.+
T Consensus 103 d~IQ~mhvlAt~-PdLYp~lvel-n~V~slL~LLgH-eNtDI--~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~ 176 (536)
T KOG2734|consen 103 DIIQEMHVLATM-PDLYPILVEL-NAVQSLLELLGH-ENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQ 176 (536)
T ss_pred HHHHHHHhhhcC-hHHHHHHHHh-ccHHHHHHHhcC-CCchh--HHHHHHHHHHhhhhcccccccccHHHHHHH-HHhcc
Confidence 466667777755 6666678888 999999999998 44443 366777777776533211 112223 66889
Q ss_pred ChHHHHHHHhcCChh------hHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLD------SKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~------~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~ 251 (398)
+++.|++-+..-+.. ...+...++.|+... ++....+++ .|.+.-|+.-+... .-..-...|..+|.-+-.
T Consensus 177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq 255 (536)
T KOG2734|consen 177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQ 255 (536)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence 999999888654433 344566677777766 677777777 67777766644443 122246677788877766
Q ss_pred Ccc-hHHHHHHcCChHHHHHHhcc-----c--CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 252 YRS-VKAQLVELGMVQILTRILSD-----S--RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 252 ~~~-~~~~~v~~g~v~~Lv~lL~~-----~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
+.+ ++...-...+|..+++-+.- + .+..+..++-...|+.+...+++|..+. .+.++. +..++.+.....
T Consensus 256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlq-Lm~Lmlr~Kk~s 333 (536)
T KOG2734|consen 256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFL-KGEGLQ-LMNLMLREKKVS 333 (536)
T ss_pred cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhh-ccccHH-HHHHHHHHHHHh
Confidence 554 77777799999999988741 1 1244677888889999999999999999 445565 444444456667
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM 360 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l 360 (398)
+..|+.+|-....+......+...++.+++..+.-+.
T Consensus 334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 7888999987776533236777788888877766554
No 101
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=8.4e-06 Score=73.00 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=39.0
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
|.|-||++.|.+||++.|||+||..|-.+.+.. ...|++|.+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 789999999999999999999999998888765 56799998763
No 102
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.71 E-value=0.0068 Score=58.46 Aligned_cols=255 Identities=15% Similarity=0.137 Sum_probs=169.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHH
Q 015939 108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEI 187 (398)
Q Consensus 108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~l 187 (398)
++.|-.+.+.++..+..+.-. -..+.+..++-+ .+ .+++-.+.+++.-+..+... -+. +.+.+.--.++..
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~-~~--~~vraa~yRilRy~i~d~~~----l~~-~~~l~id~~ii~S 74 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLS-FFGERIQCMLLS-DS--KEVRAAGYRILRYLISDEES----LQI-LLKLHIDIFIIRS 74 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHH-HHHHHHHHHHCC-Cc--HHHHHHHHHHHHHHHcCHHH----HHH-HHHcCCchhhHhh
Confidence 445566666667666655443 455555544433 12 56778899999888876554 233 4455555566667
Q ss_pred HhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939 188 LREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMV 265 (398)
Q Consensus 188 L~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v 265 (398)
|..+ +..-|++|.+.++.+...+.....+ . .|++..++.+..+. +...+..|+.+|..|+..+.. -++.+||+
T Consensus 75 L~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~--lv~~~gG~ 149 (371)
T PF14664_consen 75 LDRDNKNDVEREQALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE--LVAECGGI 149 (371)
T ss_pred hcccCCChHHHHHHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH--HHHHcCCH
Confidence 7654 4566889999999887765444444 3 68999999999998 677999999999999865432 24689999
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc-------Ch--hHHHHHHHHHHHhhc
Q 015939 266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV-------GK--TAREDAVVVIWSMCC 336 (398)
Q Consensus 266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~-------~~--~~~~~a~~~L~~l~~ 336 (398)
..|++.+.+ +..++.+..+.++-.+-.+|..|+.+.. .--+..++.-+.+. +. +.-..+..++..+-+
T Consensus 150 ~~L~~~l~d--~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 150 RVLLRALID--GSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred HHHHHHHHh--ccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence 999999964 4445889999999999999999998873 23355555555432 11 123344444444433
Q ss_pred cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.... -..-..-...++..|+..|+.. ++++|+.-..++.-+-+
T Consensus 227 sW~G-Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 227 SWPG-LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLR 269 (371)
T ss_pred cCCc-eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHC
Confidence 3210 0000001124677899999877 67888888887776665
No 103
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.6e-05 Score=71.34 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred cccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
.|+||..-+..||.++|+|.||.-||+.-...+.++||+|+.++.+.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999997766678999999988755
No 104
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.69 E-value=0.00097 Score=63.91 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=126.2
Q ss_pred hccCCChHHHHHHHhcCChhh--HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939 175 LNTYNCLPLFLEILREGNLDS--KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
+...|++..|+.++...+.+. |..|+++|..+... +|++.++. -| +..++.+-+....++..+..+..|.++=..
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 557799999999999886655 88999999977655 56677665 34 455555555555678899999999999765
Q ss_pred c-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHH
Q 015939 253 R-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVV 329 (398)
Q Consensus 253 ~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~ 329 (398)
. +.+..+++.|+++.++--.+. .+|.+.+.|.-+|.|.+- +.++++.|++. .+-+-|.-+-...++..+-+|+-
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rR--t~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRR--TDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hHHHHHHHHhhcccchheeeccc--CCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHHHHHHH
Confidence 4 589999999999999888754 689999999999999876 56778888743 44444444334467777889998
Q ss_pred HHHHhhccCCChhHHHHHHhcCCH
Q 015939 330 VIWSMCCVYKDARVKEAVVNSNGL 353 (398)
Q Consensus 330 ~L~~l~~~~~~~~~~~~~~~~g~~ 353 (398)
++..|+.. .+.-.++-..|-+
T Consensus 330 AV~vlat~---KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 330 AVAVLATN---KEVEREVRKSGTL 350 (832)
T ss_pred HHhhhhhh---hhhhHHHhhccch
Confidence 88888764 3444555555543
No 105
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.026 Score=51.72 Aligned_cols=272 Identities=11% Similarity=0.123 Sum_probs=172.2
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
...++..+++.+.. .+..|+..+..+... ..+.+.....-.++.|..++.. .++ .+.|+.+|.|++.+..-
T Consensus 5 l~elv~ll~~~sP~--v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~----~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 5 LVELVELLHSLSPP--VRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP----AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHHhccCChH--HHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc----ccHHHHHHHHHHhhHHH
Confidence 34566677776654 777788777777655 3344443332457777888877 443 37799999999976654
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhh-c-----hhhHHHHHHHHhccccC-HHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVL-E-----TENLLSALFDYLKLAED-QALN 239 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~-----~~g~i~~Lv~lL~~~~~-~~~~ 239 (398)
++.++.. .+..+++.+.+.....-...+.+|.||+.+++....+. . +.|.++........+-+ ..-.
T Consensus 76 ----~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f 149 (353)
T KOG2973|consen 76 ----RKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEF 149 (353)
T ss_pred ----HHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccch
Confidence 4553444 88888888887766677788899999999975444432 1 13455444555554412 1345
Q ss_pred HHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc-chhhHH-HHHHHHHHHhCCHHHHHHHhhccCcHHHHH----
Q 015939 240 DAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT-QILTVE-KSIKMLSIVATCSEGRLALSEEASCAGRVV---- 313 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~-~~~~~~-~al~~L~~La~~~~~~~~i~~~~g~v~~Lv---- 313 (398)
...+..+.||++....|..+.+...++.= .++. ..+ +..+++ -..++|+|.|-.......+.. -.+..|.
T Consensus 150 ~ylA~vf~nls~~~~gR~l~~~~k~~p~~-kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~--e~~~lLp~iLl 225 (353)
T KOG2973|consen 150 HYLAPVFANLSQFEAGRKLLLEPKRFPDQ-KLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD--ESINLLPAILL 225 (353)
T ss_pred hHHHHHHHHHhhhhhhhhHhcchhhhhHh-hhhc-ccccchhhhccchHHHHHhhhccchhHHHHhc--chHHHHHHHHh
Confidence 67788889999999888888765533321 1221 122 333333 567888888776666555552 1222222
Q ss_pred --------------------HHHh-----ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh-hcCcHH
Q 015939 314 --------------------ERVM-----KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ-SENEGI 367 (398)
Q Consensus 314 --------------------~~l~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~-~~~~~~ 367 (398)
+++. ..++..+..-+.+|.-||.. ..-|+.+...|+ ..+++.+- ...++.
T Consensus 226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---~~GRe~lR~kgv-YpilRElhk~e~ded 301 (353)
T KOG2973|consen 226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---RAGREVLRSKGV-YPILRELHKWEEDED 301 (353)
T ss_pred hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---hHhHHHHHhcCc-hHHHHHHhcCCCcHH
Confidence 2232 14677788889999999964 456665555555 55666773 345677
Q ss_pred HHHHHHHHHHHHhc
Q 015939 368 VRKMCGDLVKVLGK 381 (398)
Q Consensus 368 ~k~~A~~lL~~l~~ 381 (398)
+++.+-.+.+++-+
T Consensus 302 ~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 302 IREACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888776
No 106
>PTZ00429 beta-adaptin; Provisional
Probab=97.62 E-value=0.042 Score=57.74 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
.+..|+-++.++-..++ +.+.+. |.++.|..+|.+ . ++.++.+|+.+|..+...+++ +- -...+.+.
T Consensus 156 VRKtAalai~Kly~~~p---elv~~~-~~~~~L~~LL~D-~--dp~Vv~nAl~aL~eI~~~~~~----~l--~l~~~~~~ 222 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDM---QLFYQQ-DFKKDLVELLND-N--NPVVASNAAAIVCEVNDYGSE----KI--ESSNEWVN 222 (746)
T ss_pred HHHHHHHHHHHHHhhCc---cccccc-chHHHHHHHhcC-C--CccHHHHHHHHHHHHHHhCch----hh--HHHHHHHH
Confidence 66777777777765544 234445 788888888876 3 345678999999888754432 11 11234466
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
.|+..|..-+.=.+.....+|... .+..... ....+..+...|++. ++.+.-.|+++++++...
T Consensus 223 ~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e---~~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 223 RLVYHLPECNEWGQLYILELLAAQ--RPSDKES---AETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHhhcCChHHHHHHHHHHHhc--CCCCcHH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCc
Confidence 677777665555555444444321 1221111 135677777888887 788888999999988754
No 107
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.59 E-value=0.011 Score=57.85 Aligned_cols=222 Identities=11% Similarity=0.043 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
..++.++..+...... +....++..+... +++ .++..|+..|.+ .+ ..+...+..+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~-ev~~~aa~al~~~--~~~----------~~~~~L~~~L~d-~~--~~vr~aaa~ALg~i---- 113 (410)
T TIGR02270 54 AATELLVSALAEADEP-GRVACAALALLAQ--EDA----------LDLRSVLAVLQA-GP--EGLCAGIQAALGWL---- 113 (410)
T ss_pred hHHHHHHHHHhhCCCh-hHHHHHHHHHhcc--CCh----------HHHHHHHHHhcC-CC--HHHHHHHHHHHhcC----
Confidence 3567788888654431 2444444333222 111 237788888877 33 33557777777532
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
...+..+.|+.+|++.++.++..++.++.. . . ....+.|..+|++. ++.++..|++
T Consensus 114 -----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~----------r-~-~~~~~~L~~~L~d~-d~~Vra~A~r 169 (410)
T TIGR02270 114 -----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA----------H-R-HDPGPALEAALTHE-DALVRAAALR 169 (410)
T ss_pred -----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh----------h-c-cChHHHHHHHhcCC-CHHHHHHHHH
Confidence 334567888889988888888776655555 1 1 23456888888877 8889999999
Q ss_pred HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh---hccC--------------
Q 015939 245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS---EEAS-------------- 307 (398)
Q Consensus 245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~---~~~g-------------- 307 (398)
+|..+-. ..+++.|...+. +.++.|...|+..|..+-. ++....+. ...|
T Consensus 170 aLG~l~~----------~~a~~~L~~al~--d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 170 ALGELPR----------RLSESTLRLYLR--DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred HHHhhcc----------ccchHHHHHHHc--CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 9988643 245666777774 4788888888888876643 33222211 1112
Q ss_pred ----cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 ----CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ----~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.++.|..+++. +.++..++.+|..+- ....++.|+..+. ++..++.|...++.+..
T Consensus 237 ~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg-------------~p~av~~L~~~l~---d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 237 GGPDAQAWLRELLQA--AATRREALRAVGLVG-------------DVEAAPWCLEAMR---EPPWARLAGEAFSLITG 296 (410)
T ss_pred CchhHHHHHHHHhcC--hhhHHHHHHHHHHcC-------------CcchHHHHHHHhc---CcHHHHHHHHHHHHhhC
Confidence 11222222221 113333333332222 2345677777775 44599999999998887
No 108
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0031 Score=63.04 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhh--hh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRF--LA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI 160 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~--i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l 160 (398)
++-++.|...|.+.+.+ .+.-|..+|.+++.++.+.-+. .- -..-.+|.++.+.++ . ++.++..|+.++...
T Consensus 127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~--spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-P--SPKIRSHAVGCVNQF 201 (885)
T ss_pred hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-C--ChhHHHHHHhhhhhe
Confidence 35677888888888765 6777899999999776543221 10 011357888888888 4 455668899888766
Q ss_pred hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939 161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND 240 (398)
Q Consensus 161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 240 (398)
...... ..+..-...+..+..+-...++++|.+.+.+|..|....-.|..= .-.++++..+..-++. +.++.-
T Consensus 202 i~~~~q-----al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~-dE~VAL 274 (885)
T KOG2023|consen 202 IIIQTQ-----ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDV-DENVAL 274 (885)
T ss_pred eecCcH-----HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCc-chhHHH
Confidence 554332 221222345666666666669999999999999988763322221 2257788888877777 778888
Q ss_pred HHHHHHHHhcCCcchHHHHHH--cCChHHHHHHhcccC---------cc-------------------------------
Q 015939 241 AILSILITLSVYRSVKAQLVE--LGMVQILTRILSDSR---------TQ------------------------------- 278 (398)
Q Consensus 241 ~a~~aL~~Ls~~~~~~~~~v~--~g~v~~Lv~lL~~~~---------~~------------------------------- 278 (398)
.|+.....++..+-.+..+.. ...||.|++=+.-++ .+
T Consensus 275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD 354 (885)
T KOG2023|consen 275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED 354 (885)
T ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence 999999999988744443332 346777765332100 00
Q ss_pred --------------hhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHH
Q 015939 279 --------------ILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVK 344 (398)
Q Consensus 279 --------------~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 344 (398)
-.++.-++++|..|+. --++++.. -.+|.|-+.|.+..=.++|.++-+|..++-. +-
T Consensus 355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan--vf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-----cM 425 (885)
T KOG2023|consen 355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN--VFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEG-----CM 425 (885)
T ss_pred ccccccccccccccccHhhccHHHHHHHHH--hhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-----Hh
Confidence 1122323333333332 11133331 2344444444445667789999999888842 11
Q ss_pred HHHHh--cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 345 EAVVN--SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 345 ~~~~~--~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
.-++. -..+|.|+.+|... .+-+|..+++-|...+.|
T Consensus 426 ~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 426 QGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW 464 (885)
T ss_pred hhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence 11221 13577888888766 788999999999888885
No 109
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.56 E-value=0.0021 Score=53.52 Aligned_cols=120 Identities=11% Similarity=0.147 Sum_probs=97.6
Q ss_pred hhHHHHHHHHhccccC-----HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 220 ENLLSALFDYLKLAED-----QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~-----~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
.||+..|++++.++.. .+....++.++.+|-...-.-....+..-|..++..+..+..+..+.+.|+.+|.++..
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 6889999999998842 46778889999988776654555666667888888887545589999999999999998
Q ss_pred CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939 295 CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 295 ~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~ 339 (398)
+.......+..+=-++.|+..|+..++..+.+|+..+-.|-...+
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 776655555466779999999999999999999999988887654
No 110
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0034 Score=57.29 Aligned_cols=188 Identities=16% Similarity=0.145 Sum_probs=127.1
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
.-.++++|++.++.++..|+..|..++.. ..+...-.+.-.++.|..++... .+ .+.|+.+|.|++....-+..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34678999999999999999999988877 44444444466788899999887 44 7789999999999999998888
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh-cc----CcHHHHHHHHhc-cCh--hHHHHHHHHHH
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE-EA----SCAGRVVERVMK-VGK--TAREDAVVVIW 332 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~~----g~v~~Lv~~l~~-~~~--~~~~~a~~~L~ 332 (398)
+. .+..++.++. ++.......++.+|.||+..+.....+.. .. .++..++...-+ +.. .--.+-+.++.
T Consensus 81 ~~-~~k~l~~~~~--~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 QD-LLKVLMDMLT--DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HH-HHHHHHHHhc--CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 76 7777888884 35567888999999999998877665531 11 344445544443 222 22356777888
Q ss_pred HhhccCCChhHHHHHHhcCCHH-HHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 333 SMCCVYKDARVKEAVVNSNGLT-KLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~g~~~-~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
+|+.. +..|........++ ..+..+.+.++...|+.-+..|++
T Consensus 158 nls~~---~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 158 NLSQF---EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKN 201 (353)
T ss_pred HHhhh---hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHh
Confidence 88876 34555555444332 222223333333344444555555
No 111
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.049 Score=50.39 Aligned_cols=277 Identities=12% Similarity=0.098 Sum_probs=172.0
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhh----hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFATGCEAN----RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~----r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
|-.-|..++.+ ...-+++.+..+..+.+.| ...++++ |..+.++.++.. .+ .++...|...+..++....
T Consensus 87 LQrGLiaddas--VKiLackqigcilEdcDtnaVseillvvNa-eilklildcIgg-ed--deVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 87 LQRGLIADDAS--VKILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGG-ED--DEVAKAAIESIKRIALFPA 160 (524)
T ss_pred HHhcccCCcch--hhhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcC-Cc--HHHHHHHHHHHHHHHhcHH
Confidence 33444455544 5555666666666555533 2345677 999999999877 33 4566888888888887655
Q ss_pred hHHHhhHhhhccCCChH--HHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLP--LFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~--~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
.- .. +-.+.... .+.++--..+.-+|.+....+-.+.+ .++....... +|.+..|.+=|+...|.-+...+
T Consensus 161 al----ea-iFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 161 AL----EA-IFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred HH----HH-hcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhH
Confidence 41 22 33333332 23333334455566666666665544 4666666655 89999998888875577788899
Q ss_pred HHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH----HHHHhhc-cCcHHHHHHHHh
Q 015939 243 LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG----RLALSEE-ASCAGRVVERVM 317 (398)
Q Consensus 243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~----~~~i~~~-~g~v~~Lv~~l~ 317 (398)
+...+.|....-.+..+...|.|+.+..+++..+++|--.-.++.....+-+.... -+++.+. .-+|....+++.
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 99999999888888888899999999999986666665555566555554442221 1122210 123555556666
Q ss_pred ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCC--HHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 318 KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNG--LTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 318 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~--~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..++..++.|+.+|..|.... +-...+...|- ...++...-..+...-++.|..+|..++.
T Consensus 315 mnDpdaieaAiDalGilGSnt---eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNT---EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred cCCchHHHHHHHHHHhccCCc---chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 789999999999999888653 44444544443 44444333222112223344445555554
No 112
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.46 E-value=0.00074 Score=60.74 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=109.5
Q ss_pred HcCCCCchhHHHHHHHHHHHhhhh--hhhhhhhh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhh
Q 015939 95 KSENESENSCVDYLVKVAKFATGC--EANRRFLA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN 171 (398)
Q Consensus 95 ~~~~~~~~~~~~al~~L~~l~~~~--~~~r~~i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~ 171 (398)
+.++.+|+.+.+|+..|+.+..++ ......+. .....+..+...+.+ . ...+...|+.++..++..-..+ ..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~--Rs~v~~~A~~~l~~l~~~l~~~--~~ 89 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-L--RSKVSKTACQLLSDLARQLGSH--FE 89 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H-----HHHHHHHHHHHHHHHHGGG--GH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-h--HHHHHHHHHHHHHHHHHHHhHh--HH
Confidence 445556999999999999999887 22233222 111233444555544 2 2356688888888887643331 01
Q ss_pred HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhH-HHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL-LSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 172 ~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
.. -...+|.|++.+.+++..++..|..+|..+...-... ..+ ++.+...+.+. ++.++..++..|..+.
T Consensus 90 ~~---~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 90 PY---ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIIL 159 (228)
T ss_dssp HH---HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 11 2356889999999988999999999999998863311 123 45556667777 8999999999999885
Q ss_pred CCcc-hHHHHH----HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 251 VYRS-VKAQLV----ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 251 ~~~~-~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
..-. ....+- -...++.+...+. +.++++++.|-.++..+..
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYS 206 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHH
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHH
Confidence 4322 111111 1336777888884 5899999999999999865
No 113
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.055 Score=57.16 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=79.6
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW 332 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~ 332 (398)
+.-..++-..|-+|.++..+. .....+-..|+.+|..|+.+.-..+++. ...++..++..|++.-+.+ -.|+.+|-
T Consensus 2037 P~LADqip~LGylPK~~~Am~--~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l~~i~~~m~~mkK~~~~~-GLA~Ealk 2112 (2235)
T KOG1789|consen 2037 PNLADQLPSLGYLPKFCTAMC--LQNTSAPRSAIRVLHELSENQFCCDAMA-QLPCIDGIMKSMKKQPSLM-GLAAEALK 2112 (2235)
T ss_pred cchhhhCCCccchHHHHHHHH--hcCCcCcHHHHHHHHHHhhccHHHHHHh-ccccchhhHHHHHhcchHH-HHHHHHHH
Confidence 334444557899999999984 3445566899999999999888888887 4467777888887633322 27888888
Q ss_pred HhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 333 SMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
.+..... .+.+..++..|.++.|+.+|...
T Consensus 2113 R~~~r~~-~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2113 RLMKRNT-GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHhH-HHHHHHHhccCcHHHHHHHhccc
Confidence 8876533 57888899999999999999653
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=5.8e-05 Score=76.70 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=41.3
Q ss_pred CcccccCccccCCC-----ceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 12 NLFRCPISLDVMKS-----PVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d-----Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
.+-.|+||.+.|.. |-.++|||.|+..|+..|+++ ..+||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 35689999999999 889999999999999999986 77899999843
No 115
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00012 Score=63.85 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=47.6
Q ss_pred CCcccccCccccCCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 11 PNLFRCPISLDVMKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
.+.|.||+|++.+++- |+.+|||.|+..|.++.+.. ...||+|..++++.++++-
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEee
Confidence 4679999999999886 45689999999999999874 6789999999999987664
No 116
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.39 E-value=0.00017 Score=52.91 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=35.9
Q ss_pred ccccCccccCCC-ceec-CCCcccchhHHHHHHhc--CCCCCCcccccCCC
Q 015939 14 FRCPISLDVMKS-PVSL-CTGVTYDRSSIQHWLES--GHDTCPATMQILST 60 (398)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~ 60 (398)
-.||.|+..=.| |++. .|||.|-..||.+|++. ....||.||++.+.
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 356666665555 7665 59999999999999974 35689999988653
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.38 E-value=0.001 Score=49.89 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=67.4
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch
Q 015939 132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE 211 (398)
Q Consensus 132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~ 211 (398)
|+.|+..|.+ +++..++..++.+|..+- +..+++.|+.++++.++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~---------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---- 59 (88)
T PF13646_consen 1 IPALLQLLQN--DPDPQVRAEAARALGELG---------------DPEAIPALIELLKDEDPMVRRAAARALGRIG---- 59 (88)
T ss_dssp HHHHHHHHHT--SSSHHHHHHHHHHHHCCT---------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHHHHcC---------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 5788888854 234566788888887442 1134899999999999999999999999772
Q ss_pred hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939 212 SKRRVLETENLLSALFDYLKLAEDQALNDAILSILI 247 (398)
Q Consensus 212 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~ 247 (398)
. ..+++.|.+++.+..+..++..|+.+|.
T Consensus 60 ------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3 5688999999988756667888888873
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.37 E-value=0.0027 Score=57.06 Aligned_cols=183 Identities=11% Similarity=0.127 Sum_probs=108.3
Q ss_pred hcCChhhHHHHHHHHHHhhcCc---hhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch-HHHHHHcC
Q 015939 189 REGNLDSKIGSIKILDSISLDN---ESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV-KAQLVELG 263 (398)
Q Consensus 189 ~~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~-~~~~v~~g 263 (398)
.+.+.+.|..|..-|..+.... +....+.. ....+..++..+.+. ...+...|+.++..|+..-.. -...++ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4568999999999999887665 33333322 123445777777776 566889999999999754332 222333 3
Q ss_pred ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC--Ch
Q 015939 264 MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK--DA 341 (398)
Q Consensus 264 ~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~--~~ 341 (398)
.+|.|++.+. +...-+.+.|..+|..+...-..-..+. ++.+...+...++.++..++..|..+....+ ..
T Consensus 95 ~l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 7899999994 4667888999999999987433111221 3345555667899999999999988876543 11
Q ss_pred hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 342 RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 342 ~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.......-...++.+...+. +.++.+|+.|..++..+.+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYS 206 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Confidence 11111111234555555555 4489999999999998876
No 119
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.36 E-value=0.00048 Score=43.50 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
++++..+++.|+++.|+++|. ++++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcC
Confidence 357888889999999999995 4789999999999999973
No 120
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.017 Score=60.75 Aligned_cols=249 Identities=15% Similarity=0.130 Sum_probs=164.6
Q ss_pred HHHHHHh-h--CCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHH
Q 015939 72 LIAHWSH-Q--LTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIA 148 (398)
Q Consensus 72 ~i~~~~~-~--~p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~ 148 (398)
+.+.|.. + .-+|+++++-.++-|-|-- .+..|+..|..+..-++=........ |+.|-++.+|.+ +..+
T Consensus 456 AFevWLd~gse~r~PPeQLPiVLQVLLSQv----HRlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS-~a~E-- 527 (1387)
T KOG1517|consen 456 AFEVWLDYGSESRTPPEQLPIVLQVLLSQV----HRLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQS-SARE-- 527 (1387)
T ss_pred HHHHHHHhccccCCChHhcchHHHHHHHHH----HHHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhcc-chHh--
Confidence 3456663 1 2234455555554443322 57788888888887777666666667 999999999998 4332
Q ss_pred HHHHHHHHHH--hhhcccchHHHhhHhhhccCCChHHHHHHHhc-C--ChhhHHHHHHHHHHhhcC-chhHHHhhchhhH
Q 015939 149 VLESAVRVLN--LIVNENGVKEKLNRLILNTYNCLPLFLEILRE-G--NLDSKIGSIKILDSISLD-NESKRRVLETENL 222 (398)
Q Consensus 149 ~~~~al~~L~--~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~-~--~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~ 222 (398)
+...+..+. -|+.++.. ... +++.++-..++.+|+. + +++-|.-|+.+|..+..+ .-......+ .+.
T Consensus 528 -LrpiLVFIWAKILAvD~SC----Q~d-LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~l 600 (1387)
T KOG1517|consen 528 -LRPILVFIWAKILAVDPSC----QAD-LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNL 600 (1387)
T ss_pred -hhhhHHHHHHHHHhcCchh----HHH-HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccH
Confidence 233333222 23444332 344 5566666677777776 3 557788899999999888 445555555 677
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-----H
Q 015939 223 LSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-----S 296 (398)
Q Consensus 223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-----~ 296 (398)
+..-+..|.++..+=++.-.+-+|..|=. ++++|..=++.++...|+.+|+ ++.++|+..|+=+|..+..+ +
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls--D~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS--DPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc--CccHHHHHHHHHHHHHHhcccccccc
Confidence 87777788775356677778888888854 5567777679999999999995 47899999999999888763 2
Q ss_pred HHHHHH---h-------hccCcHH----HHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939 297 EGRLAL---S-------EEASCAG----RVVERVMKVGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 297 ~~~~~i---~-------~~~g~v~----~Lv~~l~~~~~~~~~~a~~~L~~l~~~ 337 (398)
+....+ . ..+..+. .++.++..+++.++...+.+|......
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 322222 0 0112233 666677778999988888788776653
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.32 E-value=0.043 Score=53.70 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=94.8
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
++..|+..|...+..++..++..|.. +.. .+..+.|+.+|++. ++.++..++.++..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~----------i~~-~~a~~~L~~~L~~~-~p~vR~aal~al~~----------- 143 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGW----------LGG-RQAEPWLEPLLAAS-EPPGRAIGLAALGA----------- 143 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhc----------CCc-hHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------
Confidence 48999999999998899999888874 333 67788999999988 89899888877766
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHh
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSM 334 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l 334 (398)
......+.+..+|. +.++.+...|+.+|..+-. ...++.|...+.+.++.++..|+..|..+
T Consensus 144 r~~~~~~~L~~~L~--d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 HRHDPGPALEAALT--HEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hccChHHHHHHHhc--CCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12235678999994 5899999999999988764 35566677778888999999998887655
No 122
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.30 E-value=8.2e-05 Score=69.88 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHh
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE 45 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~ 45 (398)
++++.||||+..|+||++++|||+.||.|-..-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999776543
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.11 Score=49.87 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=162.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhh-----h----hhhhhhhhcCCcHHHHHHHhhhccCC----cHHHHHH
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGC-----E----ANRRFLASYGGFVEAVFGVLNRKRRS----EIAVLES 152 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~-----~----~~r~~i~~~~g~v~~L~~lL~~~~~~----~~~~~~~ 152 (398)
.++.++..|.+.+.+ .....+.-++.+...+ . ..-..+++. ++++.|+.-++.. +. ...-..+
T Consensus 126 ~V~slL~LLgHeNtD--I~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRL-dEsvkeea~gv~~ 201 (536)
T KOG2734|consen 126 AVQSLLELLGHENTD--IAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERL-DESVKEEADGVHN 201 (536)
T ss_pred cHHHHHHHhcCCCch--hHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHh-hhcchhhhhhhHH
Confidence 356677777777664 5555566666666432 1 234467776 8899999888662 22 2233467
Q ss_pred HHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHH
Q 015939 153 AVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDY 229 (398)
Q Consensus 153 al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~l 229 (398)
.+..+-|+..-.+. .-.. +++.|.+.-|+.-+... -..-+.+|..+|..+..+ ++++...+. -.++..|++-
T Consensus 202 ~L~vveNlv~~r~~---~~~~-~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~ 276 (536)
T KOG2734|consen 202 TLAVVENLVEVRPA---ICTE-IVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQ 276 (536)
T ss_pred HHHHHHHHHhccHH---HHHH-HHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhh
Confidence 77788887765443 1233 55667777666644422 234467888999988777 568888887 6778888876
Q ss_pred hc-----cc---cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH---H
Q 015939 230 LK-----LA---EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE---G 298 (398)
Q Consensus 230 L~-----~~---~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~---~ 298 (398)
+. ++ +..+..++.-.+|+.+-....|+..++...++....-+++. .......++++|..+..+++ +
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~---Kk~sr~SalkvLd~am~g~~gt~~ 353 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE---KKVSRGSALKVLDHAMFGPEGTPN 353 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH---HHHhhhhHHHHHHHHHhCCCchHH
Confidence 64 22 12456678888888888899999999998899888888863 55667789999999877554 5
Q ss_pred HHHHhhccCcHHHHHHHHhc----------cChhHHHHHHHHHHHhhcc
Q 015939 299 RLALSEEASCAGRVVERVMK----------VGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~----------~~~~~~~~a~~~L~~l~~~ 337 (398)
...+++ .+++..+..+..+ .-....++.+.+||.+-..
T Consensus 354 C~kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 354 CNKFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 667774 5677766666542 2345567889999887653
No 124
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0038 Score=61.01 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHH
Q 015939 105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLF 184 (398)
Q Consensus 105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~L 184 (398)
..++..|.++++.-...|.-+.++ .+++.|+.+|+. + +..+..-++..+.|+...-++ .+.. +...|.|..|
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~-P--eimi~~~~t~~icn~vv~fsn---L~~~-fL~~~iIdvl 478 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSN-P--EIMIEFPDTIDICNKVVPFSN---LGAG-FLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcC-c--cceeeccchhhhhheeeeccc---hHHH-HHHhhHHHHH
Confidence 445566777777666778889998 999999999987 3 333445566777776654333 2344 6688999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhcCchh--HHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h---HHH
Q 015939 185 LEILREGNLDSKIGSIKILDSISLDNES--KRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V---KAQ 258 (398)
Q Consensus 185 v~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~---~~~ 258 (398)
++++.+.+...|.+..|.|+.+..+.++ +-.... .-++..++.+..++ +..++...+..|.|+..+.. | +..
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv 556 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDV 556 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCc-ccccHHHHHHHHHhccccccccccccee
Confidence 9999988999999999999999888443 333444 45678899999888 88999999999999965321 2 211
Q ss_pred HHHcC----ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHH-hhccCcHHHHHHHHhc---------c-----
Q 015939 259 LVELG----MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVMK---------V----- 319 (398)
Q Consensus 259 ~v~~g----~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i-~~~~g~v~~Lv~~l~~---------~----- 319 (398)
+.... ....|++.+. ..+|...+..+-+|.+++.++++...+ .+....+..+-++|.. +
T Consensus 557 ~~K~~p~~ylfk~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~ 634 (743)
T COG5369 557 FIKATPRRYLFKRLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEH 634 (743)
T ss_pred EEecChHHHHHHHHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence 11111 3344566664 245655556677777777656555444 3333333333333321 0
Q ss_pred ---------------------------------------ChhHHHHHHHHHHHhhcc-CC---Chh--HHHHHHhcCCHH
Q 015939 320 ---------------------------------------GKTAREDAVVVIWSMCCV-YK---DAR--VKEAVVNSNGLT 354 (398)
Q Consensus 320 ---------------------------------------~~~~~~~a~~~L~~l~~~-~~---~~~--~~~~~~~~g~~~ 354 (398)
+++......++..++.-. ++ ++. -|-.+..+.|+.
T Consensus 635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~ 714 (743)
T COG5369 635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR 714 (743)
T ss_pred ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence 000011112222221110 01 011 234456677788
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 355 KLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
-.++.+|.+.++.+|+++..+|..+.
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 88889999888999999999998765
No 125
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.27 E-value=0.00013 Score=70.29 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=43.5
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHh----cCCCCCCcccccCCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE----SGHDTCPATMQILSTKE 62 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~----~~~~~CP~~~~~l~~~~ 62 (398)
.+..|-+|.++-.||+..+|.|+|||-||.++.. ..+-+||.|...|+-+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 5678999999999999999999999999988863 23478999988887553
No 126
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.26 E-value=0.015 Score=51.55 Aligned_cols=153 Identities=21% Similarity=0.200 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC 180 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~ 180 (398)
-...|+..++-++++ ++.|..+.++ .+--.|-.+|..+ +.+..-.+-.+++++..|...++.. ..+. +...++
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~e--Vi~f-Ll~TeI 169 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQE--VIRF-LLTTEI 169 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHH--HHHH-HHHhhh
Confidence 345677777777766 7888888887 7666666777542 2233455678999999999877652 2233 668999
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchh-------hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETE-------NLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
+|..++.+..|+...+.-|+.++..+..+|..-..+.... -.+..++.-|.+..++.+.+.++++..+|+.+.
T Consensus 170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999999888875444443322 223333333333348899999999999999998
Q ss_pred chHHHHH
Q 015939 254 SVKAQLV 260 (398)
Q Consensus 254 ~~~~~~v 260 (398)
..|..+-
T Consensus 250 rar~aL~ 256 (293)
T KOG3036|consen 250 RARAALR 256 (293)
T ss_pred HHHHHHH
Confidence 7776654
No 127
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.24 E-value=0.00025 Score=65.12 Aligned_cols=54 Identities=17% Similarity=0.422 Sum_probs=43.5
Q ss_pred CCCcccccCccccCCC---ceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939 10 VPNLFRCPISLDVMKS---PVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~d---Pv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (398)
-...|.|||++..|.. -|.+ +|||.|+..+|.+.- ....||+|+++|...|+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4567999999999954 3444 799999999999983 2456999999999887644
No 128
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00019 Score=67.02 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=40.2
Q ss_pred ccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 14 FRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 14 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
+.|-||.+-|.+ =++|||+|.|=..||..|+.+.+++||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 689999999875 35789999999999999998766789999986543
No 129
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00026 Score=62.89 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCcccccCccccCCCceecC-CCcccchhHHHHHHh-cCCCCCCcccccCC
Q 015939 11 PNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLE-SGHDTCPATMQILS 59 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~ 59 (398)
..+..||+|++.-..|.++- |||.||.-||..-+. ....+||.|+++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35668999999999999986 999999999999754 33678999997654
No 130
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.034 Score=51.40 Aligned_cols=222 Identities=13% Similarity=0.177 Sum_probs=149.8
Q ss_pred HHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH--H
Q 015939 151 ESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF--D 228 (398)
Q Consensus 151 ~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv--~ 228 (398)
--++..+..+..+.+...-..-..+++.+.++.++..+-..+.++...|...|..++..++.-..++. +...+.+- .
T Consensus 100 iLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFe-SellDdlhlrn 178 (524)
T KOG4413|consen 100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFE-SELLDDLHLRN 178 (524)
T ss_pred hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcc-cccCChHHHhH
Confidence 45556555555554432111122255899999999999999999999999999999999888888887 55555543 2
Q ss_pred HhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939 229 YLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEAS 307 (398)
Q Consensus 229 lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g 307 (398)
+--.. +.-++-..+..+..+.+ .++.....-..|.+..|..=|. ...|.-+..+++.....|+....+++.+. +.|
T Consensus 179 laakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk-GteDtLVianciElvteLaeteHgrefla-Qeg 255 (524)
T KOG4413|consen 179 LAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK-GTEDTLVIANCIELVTELAETEHGREFLA-QEG 255 (524)
T ss_pred HHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc-CCcceeehhhHHHHHHHHHHHhhhhhhcc-hhh
Confidence 32223 33467778888888864 4455555557899999888886 35688889999999999999888888887 679
Q ss_pred cHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcC-------CHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 308 CAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSN-------GLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 308 ~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g-------~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
.|..+.+++... +|-.+-.++.....+-.. .....+.++. +++..+..+..+ ++..++.|...|..
T Consensus 256 lIdlicnIIsGadsdPfekfralmgfgkffgk----eaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGi 330 (524)
T KOG4413|consen 256 LIDLICNIISGADSDPFEKFRALMGFGKFFGK----EAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGI 330 (524)
T ss_pred HHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc----hHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHh
Confidence 999999999863 333333344444333221 1111111111 233344455555 78899999999998
Q ss_pred Hhc
Q 015939 379 LGK 381 (398)
Q Consensus 379 l~~ 381 (398)
|..
T Consensus 331 lGS 333 (524)
T KOG4413|consen 331 LGS 333 (524)
T ss_pred ccC
Confidence 877
No 131
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0047 Score=61.81 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=121.3
Q ss_pred CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc--CCChHHHHHHHhcCChhhHHHHHHHHHHh
Q 015939 129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT--YNCLPLFLEILREGNLDSKIGSIKILDSI 206 (398)
Q Consensus 129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 206 (398)
|.++|.|..+|.+ .+... .|-|..+|..++.++... .-...... .-.+|+++.+.++.++.+|..|..++.-+
T Consensus 127 pelLp~L~~~L~s-~d~n~--~EgA~~AL~KIcEDsa~~--lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 127 PELLPQLCELLDS-PDYNT--CEGAFGALQKICEDSAQF--LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred hhHHHHHHHHhcC-Ccccc--cchhHHHHHHHHhhhHHH--HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 4568999999998 55444 499999999999765431 00110101 23699999999999999999999999866
Q ss_pred hcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHH
Q 015939 207 SLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSI 286 (398)
Q Consensus 207 ~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al 286 (398)
..... ...+..-...++.|..+-.+. +++++++.+.+|..|......+..=-=.|+|..++..-+ +.+..+.-.|+
T Consensus 202 i~~~~-qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEAC 277 (885)
T KOG2023|consen 202 IIIQT-QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEAC 277 (885)
T ss_pred eecCc-HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHH
Confidence 55532 233333356788888888666 999999999999988754433321112345666666664 46788999999
Q ss_pred HHHHHHhCCHHHHHHHhhc-cCcHHHHHHHH
Q 015939 287 KMLSIVATCSEGRLALSEE-ASCAGRVVERV 316 (398)
Q Consensus 287 ~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l 316 (398)
.....+|..+--+..+..+ ...||.|++-|
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9999999977444333211 13555555543
No 132
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=97.14 E-value=0.00036 Score=61.70 Aligned_cols=45 Identities=33% Similarity=0.333 Sum_probs=38.2
Q ss_pred cccccCccccCCCceecC-CCcccchhHHHHHHhcC-CCCCCccccc
Q 015939 13 LFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESG-HDTCPATMQI 57 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-~~~CP~~~~~ 57 (398)
+++|||+.+...+||+.. |||.|+|..|+...... ...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 468999999999999986 99999999999998532 3469997765
No 133
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.12 E-value=0.031 Score=56.82 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=106.8
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH---HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ---LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG 298 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~---~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~ 298 (398)
.+..++..|.++ +++++..|+..+..|+.--.+|.. |.-.|. .|.+.| ...++++.-..+++|..+...-..
T Consensus 800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl--geeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL--GEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc--CcccHHHHHHHHHHHHHHHHhccc
Confidence 344556677787 899999999999999765444432 334443 377888 447999999999998888763322
Q ss_pred HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
....---.|.+|.|.-+|++...+++++++..+..+|..+++- ..++.|. .---|+.+|.+. +..+|+.|..-+.
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah-kK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH-KKEIRRAAVNTFG 950 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhhhh
Confidence 2221112388999999999999999999999999999876421 2344442 122467777777 7888998887777
Q ss_pred HHhc
Q 015939 378 VLGK 381 (398)
Q Consensus 378 ~l~~ 381 (398)
.+++
T Consensus 951 ~Iak 954 (1172)
T KOG0213|consen 951 YIAK 954 (1172)
T ss_pred HHHH
Confidence 7766
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.12 E-value=0.00087 Score=42.28 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=34.9
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
++++..+.+ .|+++.|+.+|+++ ++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 347777777 89999999999977 89999999999999873
No 135
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.024 Score=55.58 Aligned_cols=170 Identities=10% Similarity=0.072 Sum_probs=127.3
Q ss_pred hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
+.+..+...|+++|+..+..+..-+...+.++... ...+..+.. .|.|..|+.++.+. |..++....|.|++|.-+.
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sK-DdaLqans~wvlrHlmync 504 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSK-DDALQANSEWVLRHLMYNC 504 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcc-hhhhhhcchhhhhhhhhcC
Confidence 66788999999999987666666677778887665 566677776 89999999999988 7789999999999997655
Q ss_pred c--hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH----HHHHHh---hccCcHHHHHHHHhccChhHH
Q 015939 254 S--VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE----GRLALS---EEASCAGRVVERVMKVGKTAR 324 (398)
Q Consensus 254 ~--~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~----~~~~i~---~~~g~v~~Lv~~l~~~~~~~~ 324 (398)
+ .+-++...-++..++++. .+++-.++..++.+|+|+..+.. .+.-.. -..-....|++.+...+|...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~--NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i 582 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYT--NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI 582 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHh--cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence 4 455666777999999999 45788999999999999876221 222111 001135566777777788888
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhc
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNS 350 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~ 350 (398)
+..+.+|.+++... +..+..+.+.
T Consensus 583 ~~~~yilv~~aa~d--~~l~~~V~~q 606 (743)
T COG5369 583 LEGCYILVRNAACD--DTLDYIVQSQ 606 (743)
T ss_pred hhhHHHHHHHHhcc--chHHHHHHhH
Confidence 88899999988763 4555555543
No 136
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.02 E-value=0.005 Score=62.33 Aligned_cols=210 Identities=15% Similarity=0.130 Sum_probs=133.6
Q ss_pred HHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHH--------hhHhhhc------cC
Q 015939 113 KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK--------LNRLILN------TY 178 (398)
Q Consensus 113 ~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~--------~~~~il~------~~ 178 (398)
.+-.+.+.+|.-.+ |.+..++..|.. .+-+.+..+.-+..+.+-...+..... .... +. -+
T Consensus 724 ~lkde~e~yrkm~~---etv~ri~~~lg~-~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~-lg~r~kpylp 798 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVA---ETVSRIVGRLGA-ADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA-LGGRVKPYLP 798 (1172)
T ss_pred hhccccHHHHHHHH---HHHHHHHhcccc-ccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH-HhhccccchH
Confidence 34344556666555 668888888876 444444445555555444333322100 0000 00 12
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH--HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESK--RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V 255 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~ 255 (398)
..+...+..|++.++.+|++|+.++..|+..-..+ ..+....|. .|...|... ++++....+.||+.+...-. .
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34556667888899999999999999998763333 222222454 467788777 89999888888887743211 1
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-H---HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-S---EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~---~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
+..==-.|.+|.|..+|+ +...++++++...+..++.. + ..|+++... --|+++|+......+.+|+..+
T Consensus 876 km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred ccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 100012468999999995 47899999999999999983 3 246666533 2377778888889999998888
Q ss_pred HHhhc
Q 015939 332 WSMCC 336 (398)
Q Consensus 332 ~~l~~ 336 (398)
.-++.
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 76664
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.00 E-value=0.024 Score=47.29 Aligned_cols=126 Identities=14% Similarity=0.197 Sum_probs=100.0
Q ss_pred hccCCChHHHHHHHhcCCh------hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHHHHHHHHHH
Q 015939 175 LNTYNCLPLFLEILREGNL------DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALNDAILSILI 247 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~aL~ 247 (398)
+.+.+++..|++++.+|+. +....+..++..|..+.-.-+.... ..+|..++.++.... ++...+.|+..|-
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4467889999999998863 6677788888899888654455555 689999999988663 6789999999999
Q ss_pred HhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHh
Q 015939 248 TLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALS 303 (398)
Q Consensus 248 ~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~ 303 (398)
++..++......| ++=-++.|+..|+. ++++++.+|+..+-.|-. ++..|+++.
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9998888766666 55578999999964 789999999999999754 445555555
No 138
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.99 E-value=0.019 Score=56.94 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=116.5
Q ss_pred HHHHHHHhhcCchhHHHhhchhhHHHHHHHHh---------ccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHH
Q 015939 199 SIKILDSISLDNESKRRVLETENLLSALFDYL---------KLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQIL 268 (398)
Q Consensus 199 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~L 268 (398)
|+.+|+.++.++.+...+.. ..++..|+++- ....++++...|+++|.|+.... ..+..+++.|..+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 35688999999988888887 67888888886 33357889999999999998655 577778899999999
Q ss_pred HHHhcccC---cchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc-------c----------ChhHHHHH
Q 015939 269 TRILSDSR---TQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK-------V----------GKTAREDA 327 (398)
Q Consensus 269 v~lL~~~~---~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~-------~----------~~~~~~~a 327 (398)
++.|+... .+.++.-..+.+|.-++. .++.+..+..+.+++..++..+.. . +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 99997431 256778889999988876 778888888777888888887754 0 12224577
Q ss_pred HHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH
Q 015939 328 VVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM 360 (398)
Q Consensus 328 ~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l 360 (398)
+.++.|+..+.+.... -...+.++.++.++
T Consensus 160 LKllFNit~~~~~~~~---~~~~~~~~~l~~il 189 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVP---EEFSPSIPHLVSIL 189 (446)
T ss_pred HHHHHHhhhccCcccc---hhhhHHHHHHHHHH
Confidence 8888999887642211 12344455555554
No 139
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.96 E-value=0.077 Score=47.17 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=121.8
Q ss_pred hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc----ccCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHH
Q 015939 194 DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL----AEDQALNDAILSILITLSVYRS--VKAQLVELGMVQI 267 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~ 267 (398)
.-..+|..+|..++.+++.|..+.. ...--.|-.+|.. ...+-.+-.++.++..|..+++ ....+...++||.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3346788899999999999988886 4443344455543 3345578899999999987554 4455568999999
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC-------cHHHHHHHH-hccChhHHHHHHHHHHHhhccCC
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEAS-------CAGRVVERV-MKVGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g-------~v~~Lv~~l-~~~~~~~~~~a~~~L~~l~~~~~ 339 (398)
.++.+. .+++..+..|.-++.-+-.++.|-..+..... .+..+|.-+ +.+++..-++++++..+|+.+
T Consensus 173 CLrime--~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-- 248 (293)
T KOG3036|consen 173 CLRIME--SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-- 248 (293)
T ss_pred HHHHHh--cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--
Confidence 999994 47788888899999999888888776654332 222223223 237899999999999999964
Q ss_pred ChhHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 340 DARVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 340 ~~~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++.+..+.. .|-+..+ ++. ++..|+-=..+++++..
T Consensus 249 -prar~aL~~clPd~Lrd~tfs~~---l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 249 -PRARAALRSCLPDQLRDGTFSLL---LKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred -HHHHHHHHhhCcchhccchHHHH---Hhc--ChhHHHHHHHHHHHhcc
Confidence 555544332 3333333 333 46777777777777654
No 140
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.96 E-value=0.0025 Score=43.30 Aligned_cols=55 Identities=18% Similarity=0.089 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 193 LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 193 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
+.+|..|+++|.+++........-.. ..+++.|+.+|+++ +++++.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 36789999999998876433333233 68999999999988 779999999999875
No 141
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.36 Score=48.12 Aligned_cols=268 Identities=14% Similarity=0.135 Sum_probs=128.6
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
+.|-.++++.... ...++++.+..++.++- .-+.+. -+|..|-.+|++ .. ...+..|+++|..++...+..
T Consensus 267 pfL~~wls~k~em--V~lE~Ar~v~~~~~~nv-~~~~~~---~~vs~L~~fL~s-~r--v~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 267 PFLNSWLSDKFEM--VFLEAARAVCALSEENV-GSQFVD---QTVSSLRTFLKS-TR--VVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHhcCcchh--hhHHHHHHHHHHHHhcc-CHHHHH---HHHHHHHHHHhc-ch--HHHHHHHHHHHHHHHhhCCce
Confidence 3444455554444 66788888877775531 112222 346666777777 33 334589999999998754420
Q ss_pred --HHhh--HhhhccC-C--ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939 168 --EKLN--RLILNTY-N--CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 168 --~~~~--~~il~~~-g--~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 238 (398)
..|+ +..+.+. . ..=.+..+|+.|+.+....-...+-++..+ ++.|..+.+ +++.|--+. |.-
T Consensus 338 v~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id---a~rsLsl~F-----p~k 409 (898)
T COG5240 338 VSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID---ALRSLSLLF-----PSK 409 (898)
T ss_pred eeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH---HHHHHHhhC-----cHH
Confidence 0000 0001000 0 111222334444333333333333333222 222222111 121111111 111
Q ss_pred HHHHHHHHHHhcC---CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-C--HHHHHHHh---hccC--
Q 015939 239 NDAILSILITLSV---YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-C--SEGRLALS---EEAS-- 307 (398)
Q Consensus 239 ~~~a~~aL~~Ls~---~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~--~~~~~~i~---~~~g-- 307 (398)
+..-+..|.+.-. +-+.+.. +|+++.+++. .+|+.++.|+..|+..-. + ++..-.|. ..+|
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~-----~Vdaisd~~~---~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~ 481 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKY-----MVDAISDAME---NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPR 481 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHh---hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCC
Confidence 2222222222211 1122332 3455666664 367778888777666533 2 22222221 1111
Q ss_pred ------cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 ------CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ------~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.|.++..-+.-.+.-++..|+.+|...+.+..|. .....+...|-+.+... ++++|+.|..+|+.+..
T Consensus 482 a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-----~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 482 AKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-----VSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMRL 555 (898)
T ss_pred CCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-----ccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhh
Confidence 2444444444467788889999987777653321 12222334455566555 89999999999999987
Q ss_pred C-CCCC
Q 015939 382 A-SGLG 386 (398)
Q Consensus 382 ~-~~~~ 386 (398)
. .|..
T Consensus 556 ~da~~p 561 (898)
T COG5240 556 SDACEP 561 (898)
T ss_pred hhhhhc
Confidence 3 3443
No 142
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.48 Score=48.46 Aligned_cols=251 Identities=14% Similarity=0.145 Sum_probs=148.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..++..|+++..= .+..|+..+..+.-..+ +.+. -..|.|++-|+. + ++.++..|+.++..|+..++.
T Consensus 147 ~Dv~tLL~sskpY--vRKkAIl~lykvFLkYP---eAlr---~~FprL~EkLeD-p--Dp~V~SAAV~VICELArKnPk- 214 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY--VRKKAILLLYKVFLKYP---EALR---PCFPRLVEKLED-P--DPSVVSAAVSVICELARKNPQ- 214 (877)
T ss_pred HHHHHHHhcCchH--HHHHHHHHHHHHHHhhh---HhHh---hhHHHHHHhccC-C--CchHHHHHHHHHHHHHhhCCc-
Confidence 3344555555443 56677777666553322 2232 345666777766 3 345668888888888875552
Q ss_pred HHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
.+ + ..-|.+..+|... +-=+...-..++..|+--+ ..++. -.+++|..++.+..-..+.-.+..++
T Consensus 215 ----ny-L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLgK--KLieplt~li~sT~AmSLlYECvNTV 281 (877)
T KOG1059|consen 215 ----NY-L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLGK--KLIEPITELMESTVAMSLLYECVNTV 281 (877)
T ss_pred ----cc-c---cccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhhh--hhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 22 2 3456667777544 2222334445555555442 23332 46788888887763334444444444
Q ss_pred H--HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 247 I--TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 247 ~--~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
. +++.+..+....+.. +|..|=.++. ++|+.++-.++-++.-++. ++...++-- ..++..|.+.++..
T Consensus 282 Va~s~s~g~~d~~asiqL-CvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~k------dlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 282 VAVSMSSGMSDHSASIQL-CVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAHK------DLILRCLDDKDESI 352 (877)
T ss_pred eeehhccCCCCcHHHHHH-HHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHhH------HHHHHHhccCCchh
Confidence 3 333343333333333 5677777773 4788888889988888876 665554443 35788888999999
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHHHHHHHhc
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+-.|+..|..|.. .++..+++ ..|+..+ ..+++.-.-+....++..++.
T Consensus 353 RlrALdLl~gmVs----kkNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 353 RLRALDLLYGMVS----KKNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHHHHHHhh----hhhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 9999999999886 34444443 3444444 444334444556667777776
No 143
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00061 Score=62.99 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=39.5
Q ss_pred CcccccCccccCCCc-------------eecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 12 NLFRCPISLDVMKSP-------------VSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
.+-.|-||.+-|-+| =-+||||.+--+|+..|.+. ..+||.||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 566899999996554 58999999999999999985 67999999884
No 144
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.83 E-value=0.007 Score=60.10 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=127.7
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhh-------c---------cCCChHHHHHHHhcCCh
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL-------N---------TYNCLPLFLEILREGNL 193 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il-------~---------~~g~i~~Lv~lL~~~~~ 193 (398)
|.+...++.|.. .+-+.+..+.-...+.+....++..+ ..|+ + -+..+...+..|++.++
T Consensus 543 ~~vsri~~~lg~-~~~dErleerl~d~il~Afqeq~~t~---~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p 618 (975)
T COG5181 543 GLVSRIFSRLGR-LGFDERLEERLYDSILNAFQEQDTTV---GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPP 618 (975)
T ss_pred HHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhccccc---cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCc
Confidence 778888888876 33344444666666655554444310 1111 1 13456777888999999
Q ss_pred hhHHHHHHHHHHhhcCchhH---HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH-HHHHcCChHHHH
Q 015939 194 DSKIGSIKILDSISLDNESK---RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA-QLVELGMVQILT 269 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~-~~v~~g~v~~Lv 269 (398)
.+|++|+.+...|+..-.++ ..+.. .|. .|..-|... ++++....+.|++.+.+....+. +==-.|.+|.|.
T Consensus 619 ~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt 694 (975)
T COG5181 619 DVRIRAADLMGSLAKVLKACGETKELAK-LGN--ILYENLGED-YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLT 694 (975)
T ss_pred cHHHHHHHHHHHHHHHHHhcchHHHHHH-HhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhcccccCCchhhcccccc
Confidence 99999999999887652221 12222 332 356667666 89999999999888854332211 001257999999
Q ss_pred HHhcccCcchhhHHHHHHHHHHHhCCH-H---HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 270 RILSDSRTQILTVEKSIKMLSIVATCS-E---GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~L~~La~~~-~---~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
.+|+ +...+++.+....+..++... + .|+++... -.|+.+|++.+.+.+.+|...+.-++.
T Consensus 695 PILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 695 PILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred Hhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 9995 468899999999999998733 2 45565433 237777888899999999888766654
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.024 Score=59.62 Aligned_cols=206 Identities=15% Similarity=0.149 Sum_probs=145.4
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH--hcCCcchHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT--LSVYRSVKAQ 258 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~--Ls~~~~~~~~ 258 (398)
+|-++++|-+. -=|.+|..+|..+..-.....-+.-.-|++|-.++||++. - ...+..+..||. |+.++..+..
T Consensus 474 LPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-a-~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-A-RELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-h-HhhhhhHHHHHHHHHhcCchhHHH
Confidence 44444444321 1134455555555444444444444479999999999997 3 356677777773 5778778888
Q ss_pred HHHcCChHHHHHHhcc-cCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc-ChhHHHHHHHHHHHhh
Q 015939 259 LVELGMVQILTRILSD-SRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV-GKTAREDAVVVIWSMC 335 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~-~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~ 335 (398)
++..++-...++.|.. +.-+++-+..|+=+|..+.. ..-++++.. +.+.+..=.+.|.++ .+..++..+-+|..|-
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 9988888888888863 22244666677888888887 556777777 578888778888775 6888999999999998
Q ss_pred ccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCCCCCCCcccc
Q 015939 336 CVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHI 395 (398)
Q Consensus 336 ~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~ 395 (398)
.+. +..+-.-.+.++.++|..+|... .+++|..|..+|..|-+ +-.++-|.++.|+
T Consensus 629 ~d~--~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~-~~~d~fde~~~~~ 684 (1387)
T KOG1517|consen 629 EDY--DEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLS-NGSDNFDEQTLVV 684 (1387)
T ss_pred hhc--chhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhc-ccccccchhhhhh
Confidence 764 45666677899999999999765 89999999999988877 2223455555443
No 146
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.053 Score=55.66 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=157.2
Q ss_pred HhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHH-hhhcccchHHHhhHhhhccCCChHHHHHHHhcCC
Q 015939 114 FATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLN-LIVNENGVKEKLNRLILNTYNCLPLFLEILREGN 192 (398)
Q Consensus 114 l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~-~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~ 192 (398)
++.....-|...++. |+.+.|+++... ..+. .......+|. .+..... + ...+++++.+.+++..
T Consensus 489 ~aA~~K~~~~~~Ik~-~~~~aLlrl~~~-q~e~--akl~~~~aL~~~i~f~~~-----~-----~~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKP-GGYEALLRLGQQ-QFEE--AKLKWYHALAGKIDFPGE-----R-----SYEVVKPLDSALHNDE 554 (748)
T ss_pred HhhhhHHhcCccccc-cHHHHHHHHHHH-hchH--HHHHHHHHHhhhcCCCCC-----c-----hhhhhhhhcchhhhhH
Confidence 333334456667777 999999999877 3322 2244555555 3322221 1 2356777777777652
Q ss_pred -hhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHH-cCChHHH
Q 015939 193 -LDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLVE-LGMVQIL 268 (398)
Q Consensus 193 -~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~-~g~v~~L 268 (398)
.--...+..++.||+.. +..|..+.. .-+++.+-.++... ++-.+++++..+.||...+. ....+++ ....+..
T Consensus 555 ~~~en~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 555 KGLENFEALEALTNLASISESDRQKILK-EKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHH
Confidence 22334578889999877 456666665 45555555555555 78899999999999988776 4455566 5566666
Q ss_pred HHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH-HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939 269 TRILSDSRTQILTVEKSIKMLSIVATCSEGRLA-LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAV 347 (398)
Q Consensus 269 v~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 347 (398)
...+. ..+......+++++..++...++... +.+.......++.++.+.+..+|...+.+..++... ..+..+.+
T Consensus 633 ~~~~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~--~~ei~~~~ 708 (748)
T KOG4151|consen 633 NLNLE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA--LFEIAEKI 708 (748)
T ss_pred HHHHH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH--HHHHHHHh
Confidence 66663 25666667777888867665554443 544456788899999999999999999999996543 35677777
Q ss_pred HhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 348 VNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 348 ~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
.....++-+. -++...-...++.|...|.
T Consensus 709 ~~~~~~~~l~-~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 709 FETEVMELLS-GLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred ccchHHHHHH-HHHHhhhhhhhhhhhhHHH
Confidence 7777766443 3333323445555544443
No 147
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.25 Score=49.05 Aligned_cols=278 Identities=11% Similarity=0.054 Sum_probs=166.7
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+...+.++..+++. .+..+..-+-.+.++-..-+..--..+++||.|-.-+.. .++.. +...+.-|..+-.- ++
T Consensus 126 iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~-~n~~t--R~flv~Wl~~Lds~-P~ 199 (675)
T KOG0212|consen 126 IFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV-INPMT--RQFLVSWLYVLDSV-PD 199 (675)
T ss_pred HHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc-CCchH--HHHHHHHHHHHhcC-Cc
Confidence 44444445444443 455555555555544222222111122455555444433 33332 24445544444322 22
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
...+-.-...++-|..+|...+.++|..+-.+|.++...=.++....+....++.++.-+.++ ++..+..|+.-|
T Consensus 200 ----~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi 274 (675)
T KOG0212|consen 200 ----LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWI 274 (675)
T ss_pred ----HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHH
Confidence 243222467788889999999999997776666655433223333334356788888888888 888998888888
Q ss_pred HHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHH---HHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939 247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSI---KMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKT 322 (398)
Q Consensus 247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al---~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~ 322 (398)
..+..-....--..-.|++..++..+.+ .++. +.+.+. +.|..+.+.+...+++- -...+..+.+.+......
T Consensus 275 ~efV~i~g~~~l~~~s~il~~iLpc~s~--~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id-~~~ii~vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 275 QEFVKIPGRDLLLYLSGILTAILPCLSD--TEEMSIKEYAQMVNGLLLKLVSSERLKEEID-YGSIIEVLTKYLSDDREE 351 (675)
T ss_pred HHHhcCCCcchhhhhhhhhhhcccCCCC--CccccHHHHHHHHHHHHHHHHhhhhhccccc-hHHHHHHHHHHhhcchHH
Confidence 8887654443334466788888888853 3342 333332 23555566565555532 334677777777778888
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
++-.++.-+..+-...+ ..-.......++.|+..|... ++.+-..+..++..+..+
T Consensus 352 tri~~L~Wi~~l~~~~p---~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAP---GQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHHHHHhhCc---chhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcC
Confidence 88888888877776543 223345577888899888765 778888888888777663
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.67 E-value=0.00091 Score=63.55 Aligned_cols=43 Identities=26% Similarity=0.584 Sum_probs=37.2
Q ss_pred ccccCccccCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
=+||+|++=|.+-| ++.|.|+|--.|+.+|+.. +||+||-..+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 38999999999887 5679999999999999754 8999987655
No 149
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.33 Score=48.19 Aligned_cols=193 Identities=12% Similarity=0.209 Sum_probs=120.6
Q ss_pred ccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH-HHHHHHH---HHHHHhcC
Q 015939 176 NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ-ALNDAIL---SILITLSV 251 (398)
Q Consensus 176 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~a~---~aL~~Ls~ 251 (398)
.-...++.++.=+.+..++++..|..-|..+..-....-. ...+|.+..++.++.+. .+ ..+..+. ..|..+.+
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence 3457789999999999999999998888877666433222 33378888888888876 33 2232222 23445544
Q ss_pred CcchHHHHHHcC-ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHH
Q 015939 252 YRSVKAQLVELG-MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVV 330 (398)
Q Consensus 252 ~~~~~~~~v~~g-~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~ 330 (398)
....... ++.| .+..|...++ ++..+.+-.++.-+..|-..-.+.--.. .....+.|.+-|.+.++.+-..++.+
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~--~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLS--DDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 4333322 3332 4666777774 3556666667776666655333433333 34788889999999999999999999
Q ss_pred HHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 331 IWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 331 L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|.++|..+.++..+ ..+.-|+.+...+ ..-.+..+.-+++.+.-
T Consensus 401 la~i~~s~~~~~~~------~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 401 LASICSSSNSPNLR------KFLLSLLEMFKED-TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHhcCcccccHH------HHHHHHHHHHhhh-hHHHHhhhhHHHHHHHH
Confidence 99999875443221 1222333333333 33455666666666654
No 150
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0013 Score=57.51 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHh
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE 45 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~ 45 (398)
.|.+.=+|.+|++.+.|||+.+-||.|||+||-+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 4454458999999999999999999999999999873
No 151
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.61 E-value=0.072 Score=48.06 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
...|+.-++.+++ +++.|..+.++ ...-.|..+|..+. .+-..++-.+++++..+...++. +.-.. +...+++
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~--evi~f-Ll~tEii 141 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDP--EVISF-LLQTEII 141 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--H--HHHHH-HHCTTHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcH--HHHHH-HHhhchH
Confidence 4567777777776 58899999998 88888888886521 11234456788888888875543 12233 5588999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh-------HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN-------LLSALFDYLKLAEDQALNDAILSILITLSVYRS 254 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 254 (398)
|..+..|..|+.-.|.-|..++..+..++..-..+..+.. ++..+|.-|....++.+.+...++-..|+.++.
T Consensus 142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 9999999999999999999999999888766665554333 333344333333488999999999999999998
Q ss_pred hHHHHHH
Q 015939 255 VKAQLVE 261 (398)
Q Consensus 255 ~~~~~v~ 261 (398)
.+..+..
T Consensus 222 ar~aL~~ 228 (262)
T PF04078_consen 222 AREALRQ 228 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 152
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0015 Score=59.60 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=42.6
Q ss_pred cCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
...|+.=.||+|++--.+|-++. +|..||..||-.+..+ +..||+|+.+..
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 34455568999999999998887 7999999999999984 778999987643
No 153
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.002 Score=58.15 Aligned_cols=47 Identities=15% Similarity=0.374 Sum_probs=37.2
Q ss_pred ccccCccccCC--C-ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 14 FRCPISLDVMK--S-PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 14 ~~Cpi~~~~~~--d-Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.-|-||..-|. | =+++||.|.|-+.||++|+..-...||+|+.++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 36999987663 2 35789999999999999997545679999987654
No 154
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.50 E-value=0.22 Score=47.41 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=118.6
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
-.++.+..++.+ .+ ..+...+...+..+ ....+++.+..+|...++.+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~-~~--~~vr~~aa~~l~~~---------------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-- 102 (335)
T COG1413 43 EAADELLKLLED-ED--LLVRLSAAVALGEL---------------GSEEAVPLLRELLSDEDPRVRDAAADALGELG-- 102 (335)
T ss_pred hhHHHHHHHHcC-CC--HHHHHHHHHHHhhh---------------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--
Confidence 467888888887 33 34446666664332 23356899999999999999998888554432
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
. ...++.|+.+|++..+..++..+..+|..+-.. .++..++.++.+ ..... +...+
T Consensus 103 --------~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~--~~~~~---a~~~~ 158 (335)
T COG1413 103 --------D-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQD--EDSGS---AAAAL 158 (335)
T ss_pred --------C-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhcc--chhhh---hhhhc
Confidence 2 567899999999533888999999999886432 347888888854 22111 11111
Q ss_pred HHHhCCHHHHHHH------hhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 290 SIVATCSEGRLAL------SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 290 ~~La~~~~~~~~i------~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
. ......|... ..+.-.++.+...+......++..|+..|..+...+ ....+.+...++..
T Consensus 159 ~--~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~ 225 (335)
T COG1413 159 D--AALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSDE 225 (335)
T ss_pred c--chHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCC
Confidence 0 0000111111 123456788888888888889999999988877631 22333344444333
Q ss_pred CcHHHHHHHHHHHHH
Q 015939 364 NEGIVRKMCGDLVKV 378 (398)
Q Consensus 364 ~~~~~k~~A~~lL~~ 378 (398)
+..+|..+...|..
T Consensus 226 -~~~vr~~~~~~l~~ 239 (335)
T COG1413 226 -SLEVRKAALLALGE 239 (335)
T ss_pred -CHHHHHHHHHHhcc
Confidence 55666655554443
No 155
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.15 Score=52.27 Aligned_cols=263 Identities=11% Similarity=0.110 Sum_probs=166.7
Q ss_pred HHcCCCCchhHHHHHHHHHHHh---h---hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 94 IKSENESENSCVDYLVKVAKFA---T---GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 94 l~~~~~~~~~~~~al~~L~~l~---~---~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
+.+...+...+..|+++|.+-. + .++..|..|.+. .+....+ ++.+++..|+.+|..+..--..+
T Consensus 181 mrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv------vcEatq~---~d~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 181 MRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQV------VCEATQS---PDEEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeee------eeecccC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333347888888887532 2 134456555543 2333333 56678899999998876532221
Q ss_pred HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h----hHHHh-------------hchhhHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-E----SKRRV-------------LETENLLSALFDY 229 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~----~~~~i-------------~~~~g~i~~Lv~l 229 (398)
...+ + ....+..-+.-+++.++++...+...=++++..+ + ..... ....+++|.|+.+
T Consensus 252 --m~~y-M-~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~ 327 (859)
T KOG1241|consen 252 --MEPY-M-EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLEL 327 (859)
T ss_pred --HHHH-H-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHH
Confidence 1122 1 3345666677788899999999888888777653 1 11111 0113678888888
Q ss_pred hccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhCCHH--HH
Q 015939 230 LKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD--SRTQILTVEKSIKMLSIVATCSE--GR 299 (398)
Q Consensus 230 L~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~~~~--~~ 299 (398)
|... ++-..-++|..+|.-++.. +.-..|+.++.++.. .+++-+-++.|..++..+-..++ ..
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence 8652 1223455555555554322 122244444444421 34677888888888888776443 34
Q ss_pred HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
..++ .+++|.++.++.+.+--+++.+.+.|..++.+-+ +..-....-.+.++.++.=|.. .+++-.++++.+-.|
T Consensus 401 t~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 401 TPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISL 475 (859)
T ss_pred hHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHH
Confidence 4555 4899999999998888999999999999997653 2334445556777777777764 489999999999999
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
.+
T Consensus 476 ae 477 (859)
T KOG1241|consen 476 AE 477 (859)
T ss_pred HH
Confidence 97
No 156
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0017 Score=61.09 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=38.4
Q ss_pred cccccCccccCCC---ceecCCCcccchhHHHHHHhcCC--CCCCcccc
Q 015939 13 LFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGH--DTCPATMQ 56 (398)
Q Consensus 13 ~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~CP~~~~ 56 (398)
-|.|||.++--+| |+.+.|||..++.+|.+-...|. ..||-|..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3699999999887 99999999999999999998776 56888854
No 157
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00067 Score=60.08 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=44.4
Q ss_pred CcccccCccccCCCce----------ecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCCCccc
Q 015939 12 NLFRCPISLDVMKSPV----------SLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv----------~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~l~~n 66 (398)
++=.|-+|++-+.+-| .++|+|.|---||..|.--| ..+||-|++..+.+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4457999998777666 89999999999999998655 4689999998776665555
No 158
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.44 E-value=0.7 Score=44.01 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=115.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.+..+++.+.+.+.. .+..|...+..+. .. -+++.|..+|.+ . +..++..|+.+|..+
T Consensus 44 ~~~~~~~~l~~~~~~--vr~~aa~~l~~~~-----------~~-~av~~l~~~l~d-~--~~~vr~~a~~aLg~~----- 101 (335)
T COG1413 44 AADELLKLLEDEDLL--VRLSAAVALGELG-----------SE-EAVPLLRELLSD-E--DPRVRDAAADALGEL----- 101 (335)
T ss_pred hHHHHHHHHcCCCHH--HHHHHHHHHhhhc-----------hH-HHHHHHHHHhcC-C--CHHHHHHHHHHHHcc-----
Confidence 455555666555322 4444444422222 12 467778888877 3 345668888866543
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH--------
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ-------- 236 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-------- 236 (398)
.....++.|+.+|.. .+..+|..++.+|..+-.. ..+.+|+..+.+. ..
T Consensus 102 ----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~-~~~~a~~~~~ 159 (335)
T COG1413 102 ----------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDE-DSGSAAAALD 159 (335)
T ss_pred ----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccc-hhhhhhhhcc
Confidence 234568899999994 7999999999999877543 3367778888776 32
Q ss_pred ----HHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHH
Q 015939 237 ----ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRV 312 (398)
Q Consensus 237 ----~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~L 312 (398)
..+..+..+|.. +-+.-.++.+.+.+.+ .+..++..|...|..+.... ...++.+
T Consensus 160 ~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~--~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l 218 (335)
T COG1413 160 AALLDVRAAAAEALGE----------LGDPEAIPLLIELLED--EDADVRRAAASALGQLGSEN---------VEAADLL 218 (335)
T ss_pred chHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhC--chHHHHHHHHHHHHHhhcch---------hhHHHHH
Confidence 123333333332 2234478889999954 56688889999998888754 1344556
Q ss_pred HHHHhccChhHHHHHHHHHHHh
Q 015939 313 VERVMKVGKTAREDAVVVIWSM 334 (398)
Q Consensus 313 v~~l~~~~~~~~~~a~~~L~~l 334 (398)
...+...+..++..++..|..+
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhccc
Confidence 6666666666666666655443
No 159
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.76 Score=46.94 Aligned_cols=253 Identities=12% Similarity=0.112 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
...-|++.+.++... ++++.+.. + | -.+|-+ ++...-+...|+-+|..|....++. +...++..
T Consensus 127 fv~LAL~~I~niG~r--e~~ea~~~--D-I---~KlLvS-~~~~~~vkqkaALclL~L~r~spDl-------~~~~~W~~ 190 (938)
T KOG1077|consen 127 FVCLALHCIANIGSR--EMAEAFAD--D-I---PKLLVS-GSSMDYVKQKAALCLLRLFRKSPDL-------VNPGEWAQ 190 (938)
T ss_pred HHHHHHHHHHhhccH--hHHHHhhh--h-h---HHHHhC-CcchHHHHHHHHHHHHHHHhcCccc-------cChhhHHH
Confidence 445566666665432 34444432 1 2 356655 4333344456666666666655541 33447888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhh-------------------------HHHHHHHHhccc--
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETEN-------------------------LLSALFDYLKLA-- 233 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g-------------------------~i~~Lv~lL~~~-- 233 (398)
.++.+|+..+..+...+...+..|+.. ++++-.+...-+ ..-.++++|+..
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence 888888877776766777777777655 233322211001 112234444321
Q ss_pred -cCHHHHHHHHHHHH---HhcCCcc-h---HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHh-
Q 015939 234 -EDQALNDAILSILI---TLSVYRS-V---KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALS- 303 (398)
Q Consensus 234 -~~~~~~~~a~~aL~---~Ls~~~~-~---~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~- 303 (398)
+|+..+.....+|- |...... + ....+..-++--.+.+...-++++++..+|+..|..+-.+.| +.+.+.
T Consensus 271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 23334433333333 2222111 1 111111111111233333334677777788877777654332 222211
Q ss_pred -------hccC-------cHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHH
Q 015939 304 -------EEAS-------CAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIV 368 (398)
Q Consensus 304 -------~~~g-------~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~ 368 (398)
...- -...++..|+ ..+..+++.|+..|..+|. .++...+++ -|++.|.+- +..+
T Consensus 351 Esm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD----~~Nak~IV~-----elLqYL~tA-d~si 420 (938)
T KOG1077|consen 351 ESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD----VSNAKQIVA-----ELLQYLETA-DYSI 420 (938)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc----hhhHHHHHH-----HHHHHHhhc-chHH
Confidence 0101 1334455555 3677778888888888884 566666543 466666654 5666
Q ss_pred HHHHHHHHHHHhc
Q 015939 369 RKMCGDLVKVLGK 381 (398)
Q Consensus 369 k~~A~~lL~~l~~ 381 (398)
|+--.-=...|++
T Consensus 421 reeivlKvAILaE 433 (938)
T KOG1077|consen 421 REEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHHHHH
Confidence 6654443444444
No 160
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.42 E-value=0.0063 Score=41.27 Aligned_cols=55 Identities=15% Similarity=-0.045 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH
Q 015939 236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV 292 (398)
Q Consensus 236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L 292 (398)
+.++..|+++|.+++........-.-..+++.|+.+|.+ +++.|+..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD--DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence 468899999999998766544444555699999999954 6679999999999875
No 161
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0025 Score=56.03 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=43.4
Q ss_pred CCcccccCccccCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939 11 PNLFRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (398)
...|+|||++-.|.+-. +.+|||.|.-.++.+.- ..+|++|+++++..++++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 35699999999999864 45799999999988874 558999999999888643
No 162
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.33 E-value=0.049 Score=49.37 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcCChHHHHHHh
Q 015939 195 SKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELGMVQILTRIL 272 (398)
Q Consensus 195 ~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g~v~~Lv~lL 272 (398)
....|..+|..++. ++..+..+.. ...+..|+++|....++.++.+++.+|..+. .++.|.+.+-+.||+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 35567788886664 5888888887 8899999999965447889999999988775 5667999999999999999999
Q ss_pred cccCcchhhHHHHHHHHHHHhC
Q 015939 273 SDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 273 ~~~~~~~~~~~~al~~L~~La~ 294 (398)
++.+.+.++..+++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 8777788888888888877654
No 163
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.68 Score=46.50 Aligned_cols=184 Identities=12% Similarity=0.121 Sum_probs=115.8
Q ss_pred cCCChHHHHHHHhc---CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939 177 TYNCLPLFLEILRE---GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
+++.++.+-.+|.+ ....+|..|..+...+... +..... -.++.++.-+... .-..+.+++..|..+...
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~-kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEA-KWRTKMASLELLGAMADC 284 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh
Confidence 56667777777653 3678888888887766544 322222 2334444444333 456788999999988887
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW 332 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~ 332 (398)
.+......-..+||.+.+.| .+..+++++.+..+|..++..-++-. |. -.+|.|+..+...+..+ ..++..|.
T Consensus 285 ap~qLs~~lp~iiP~lsevl--~DT~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~ 357 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVL--WDTKPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLG 357 (569)
T ss_pred chHHHHHHHhHhhHHHHHHH--ccCCHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhc
Confidence 77777777788999999999 66899999999999999987555444 32 35677777776444333 33444443
Q ss_pred HhhccCCChhHHHHHHhcCCHHHHHHHHhhc---CcHHHHHHHHHHHHHHhc
Q 015939 333 SMCCVYKDARVKEAVVNSNGLTKLLLVMQSE---NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~---~~~~~k~~A~~lL~~l~~ 381 (398)
.-+. + .-+.+-.+..++-+|+.+ -+...+++++.+..++..
T Consensus 358 ~ttF-------V-~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 358 ATTF-------V-AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred ceee-------e-eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3221 1 112223333344333322 245677888888877765
No 164
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.27 E-value=0.027 Score=43.45 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939 238 LNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALS 303 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~ 303 (398)
.+...+++|.||+- +..++..+.+.|+++.++..-.-.+.+|-+++-|+.++++|+. ++++++.|.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35678899999985 5578888889999999999886445688999999999999988 666766664
No 165
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.20 E-value=0.55 Score=43.51 Aligned_cols=227 Identities=10% Similarity=0.043 Sum_probs=151.9
Q ss_pred HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939 150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227 (398)
Q Consensus 150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 227 (398)
+--|+++|.++....+. |..+..+...-..+++++++. ..+.|-+..-+++-|+.++....-+-.-...+.-|+
T Consensus 166 rlfav~cl~~l~~~~e~----R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 166 RLFAVSCLSNLEFDVEK----RKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHhhhhhhHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 35677888888776553 454455666778889999865 688999999999999999877755555456788889
Q ss_pred HHhccccCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhc-ccCcchhhHHHHHHHHHHHh-------CCH-
Q 015939 228 DYLKLAEDQALNDAILSILITLSVYR--SVKAQLVELGMVQILTRILS-DSRTQILTVEKSIKMLSIVA-------TCS- 296 (398)
Q Consensus 228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~-~~~~~~~~~~~al~~L~~La-------~~~- 296 (398)
.+.+.....++.+-++..+.|++.-. .....+.-.|-+..-+++|+ +.-+|++++..--.+=..|. .-+
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99887756778899999999998632 45666666776666666664 22345555533222211111 111
Q ss_pred -----------------------HHHHHHhhc-cCcHHHHHHHHhccChh-HHHHHHHHHHHhhccCCChhHHHHHHhcC
Q 015939 297 -----------------------EGRLALSEE-ASCAGRVVERVMKVGKT-AREDAVVVIWSMCCVYKDARVKEAVVNSN 351 (398)
Q Consensus 297 -----------------------~~~~~i~~~-~g~v~~Lv~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~g 351 (398)
.+...+.++ --.+..|.++++...+. .-.-|+.=+..+...+ ++....+..-|
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~--PE~~~vl~Kyg 399 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS--PEINAVLSKYG 399 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC--chHHHHHHHhh
Confidence 112222111 12466677777764444 2334555555555544 67888888999
Q ss_pred CHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939 352 GLTKLLLVMQSENEGIVRKMCGDLVKVLGKAS 383 (398)
Q Consensus 352 ~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~ 383 (398)
+=+.+..+|..+ ++++|-.|...++.+-.+.
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCISSE 430 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHHhhh
Confidence 999999999877 8999999999998876543
No 166
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0022 Score=60.27 Aligned_cols=59 Identities=27% Similarity=0.524 Sum_probs=46.0
Q ss_pred ccccCccccCCCc-----eecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCCCcccHHHHHH
Q 015939 14 FRCPISLDVMKSP-----VSLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKEFVPNLTLHRL 72 (398)
Q Consensus 14 ~~Cpi~~~~~~dP-----v~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~ 72 (398)
-+||||.+-..-| |.+.|||-|-..||++|+.+- ...||.|.-.-...++.+-.+++..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 4799999999887 467799999999999999532 2469999776666677777666544
No 167
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.034 Score=55.84 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=116.2
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHH---hhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 132 VEAVFGVLNRKRRSEIAVLESAVRVLN---LIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 132 v~~L~~lL~~~~~~~~~~~~~al~~L~---~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
....+..+.+ ....++..|+.++. |......+.+.+... + ...++..+.+.+...+..+|..|+.+|+.+-.
T Consensus 236 Y~~A~~~lsD---~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k-l-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 236 YSRAVKHLSD---DYEDVRKAAVQLVSVWGNRCPAPLERESEEEK-L-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHhcc---hHHHHHHHHHHHHHHHHhcCCCcccchhhhhh-h-HHHHHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence 3444555554 34456677766554 444222222222222 1 24568888899998899999999998886644
Q ss_pred C-chhHHH--------------------------------------------------hhchhhHHHHHHHHhccccCHH
Q 015939 209 D-NESKRR--------------------------------------------------VLETENLLSALFDYLKLAEDQA 237 (398)
Q Consensus 209 ~-~~~~~~--------------------------------------------------i~~~~g~i~~Lv~lL~~~~~~~ 237 (398)
. ++.-.+ |.. +|+-.++|.=|.+. -.+
T Consensus 311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDE-f~E 388 (823)
T KOG2259|consen 311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDE-FYE 388 (823)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccc-ccccceeeeechHH-HHH
Confidence 3 211111 111 23334444444444 458
Q ss_pred HHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939 238 LNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
++++|...++.|+.+.. ... .+++.|++++ .++...++.+|+.+|..++.+-..++ .-++.+.+.|
T Consensus 389 VR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf--NDE~~~VRL~ai~aL~~Is~~l~i~e------eql~~il~~L 455 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFAV-----RALDFLVDMF--NDEIEVVRLKAIFALTMISVHLAIRE------EQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHheecH------HHHHHHHHHH
Confidence 99999999999986543 322 2678999999 45778899999999999998633333 3455677888
Q ss_pred hccChhHHHHHHHHHHH
Q 015939 317 MKVGKTAREDAVVVIWS 333 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~ 333 (398)
.+.+..+++..-..|.+
T Consensus 456 ~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 456 EDRSVDVREALRELLKN 472 (823)
T ss_pred HhcCHHHHHHHHHHHHh
Confidence 88899999887777644
No 168
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.39 Score=49.35 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=119.7
Q ss_pred CcHHHHHHHhhhcc---CCcHH-HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHH
Q 015939 130 GFVEAVFGVLNRKR---RSEIA-VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDS 205 (398)
Q Consensus 130 g~v~~L~~lL~~~~---~~~~~-~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 205 (398)
+.+|.|+++|..+. +.+.. ....|-.+|..++....+ . ++. -++|.+-+-+++.+..-|+.|+.++..
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D------~-Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD------D-IVP-HVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc------c-chh-hhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 67888999996631 11111 113344455544432222 1 111 344444445567788889999999999
Q ss_pred hhcCch-hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHH-HHHcCChHHHHHHhcccCcchhhH
Q 015939 206 ISLDNE-SKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQ-LVELGMVQILTRILSDSRTQILTV 282 (398)
Q Consensus 206 L~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~ 282 (398)
+...++ .+..=.. .+++|.++.++.++ +.-++..++|+|+.++..- +.+.. ....+.++.++.=|. +.|.+.
T Consensus 391 Il~gp~~~~Lt~iV-~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~---DePrva 465 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIV-IQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN---DEPRVA 465 (859)
T ss_pred hhcCCchhhhhHHH-hhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh---hCchHH
Confidence 988843 3332222 68999999999977 7778899999999997543 22222 224556677777664 489999
Q ss_pred HHHHHHHHHHhC--CHHHHHH----HhhccCcHHHHHHHH----hc---cChhHHHHHHHHHHHhhccCC
Q 015939 283 EKSIKMLSIVAT--CSEGRLA----LSEEASCAGRVVERV----MK---VGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 283 ~~al~~L~~La~--~~~~~~~----i~~~~g~v~~Lv~~l----~~---~~~~~~~~a~~~L~~l~~~~~ 339 (398)
.+++|++.+|+. .+..+.. .. + -..+.+++-| .+ .....+..|..+|..|-.++.
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~-t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPA-T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcc-c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 999999999994 1111111 22 1 1233333333 22 234567788888888887764
No 169
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.02 E-value=0.15 Score=50.39 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=115.9
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc--chhhHHHHHHHHHHHhCCHHHH
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT--QILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~--~~~~~~~al~~L~~La~~~~~~ 299 (398)
....+.+++.++ +...+..++.-|..++.+......++...++..|.+++.+... ...+...++.++..|-.+.-..
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 345677888888 7778888999999999999999999999999999999965332 3456666666666665544333
Q ss_pred HHHhhccCcHHHHHHHHh--ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERVM--KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
...+. ..+|...+.++. ..+..+-..|+..|.++..++ ......+.+.--+..|+..++.+ +.+++.+|-.++.
T Consensus 163 W~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s--~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~n 238 (713)
T KOG2999|consen 163 WESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGS--DTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLN 238 (713)
T ss_pred eeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC--hHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 33332 245555555553 356677789999999998864 56778888888999999999988 7888888988888
Q ss_pred HHhc
Q 015939 378 VLGK 381 (398)
Q Consensus 378 ~l~~ 381 (398)
.+-.
T Consensus 239 al~~ 242 (713)
T KOG2999|consen 239 ALFR 242 (713)
T ss_pred HHHh
Confidence 7766
No 170
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.01 E-value=0.25 Score=51.65 Aligned_cols=192 Identities=6% Similarity=0.000 Sum_probs=137.1
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 182 PLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
...+..+.-+ .+.++..|++++...+... ...-.-.++++.|..+.... +.++....+.+|...+..+.......
T Consensus 493 ~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~ 568 (1005)
T KOG2274|consen 493 NATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM 568 (1005)
T ss_pred HHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh
Confidence 3344444433 5566777777766555221 11111267888888888877 77889999999999998887777777
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccC----hhHHHHHHHHHHHhhc
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVG----KTAREDAVVVIWSMCC 336 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~----~~~~~~a~~~L~~l~~ 336 (398)
+.-..|.++.+....++||-+...+-.++..|+....+...+. +-.+|.+|..|.... .....-|+.+|..+-+
T Consensus 569 ~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 569 ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 8888898888886567899999999999999998555555555 368999999998644 6667788888887777
Q ss_pred cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..+. ..-..++.. ++|.+.+..-..++...-+.+..+|+.+=.
T Consensus 647 ~tp~-pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 647 NTPS-PLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred cCCC-CccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 6653 344444433 667676666555577888889888887755
No 171
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.00 E-value=0.028 Score=48.73 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=68.7
Q ss_pred chHHHHHHcCChHHHHHHhccc-------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 254 SVKAQLVELGMVQILTRILSDS-------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~-------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
+-...+++.||+..|+.+|... ..+......++.+|+.|..+..|...+..+.+++..|+..|.+.+..++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 3466788999999999998621 134467788999999999999999999989999999999999999999999
Q ss_pred HHHHHHHhhc
Q 015939 327 AVVVIWSMCC 336 (398)
Q Consensus 327 a~~~L~~l~~ 336 (398)
++.+|..+|.
T Consensus 178 ~leiL~~lc~ 187 (187)
T PF06371_consen 178 ALEILAALCL 187 (187)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999998873
No 172
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.98 E-value=0.32 Score=48.16 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=111.5
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc---CHHHHHHHHHHHHHhcCCcchHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE---DQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
...+.+++.+|+...+..|...|..++.+......+.. ..++..|..+..++. +.+.....++++..+-...-.-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 45567888899889998899999999999877777766 567899999998872 24566677777766632221212
Q ss_pred HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
..+.-..|.....+..-...+..+...|+..|.++..+.. .++.+. .+--+..|+..+..++...+..|+..+-.+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~-eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVA-EEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHH-hcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 2222223344444443223467788899999999987555 555565 45789999999999999999999988877766
Q ss_pred cCC
Q 015939 337 VYK 339 (398)
Q Consensus 337 ~~~ 339 (398)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 544
No 173
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.92 E-value=0.0047 Score=41.14 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=36.5
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
+..|=.|...=...++++|||..|+.|..-+ ....||.|+.+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 4457778888888999999999999884333 3457999999987654
No 174
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.62 Score=48.19 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=88.0
Q ss_pred HHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHH
Q 015939 225 ALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLAL 302 (398)
Q Consensus 225 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i 302 (398)
.+++.|+++ |...++.|+..++.|.-. .|...|+ .-|++.|. ..+++.+..+..-+..++. .|+.+..|
T Consensus 354 tIleCL~Dp-D~SIkrralELs~~lvn~-~Nv~~mv-----~eLl~fL~--~~d~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 354 TILECLKDP-DVSIKRRALELSYALVNE-SNVRVMV-----KELLEFLE--SSDEDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHH--hccHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 467888888 888999999998888644 4444444 45778884 3477788777777777765 44444432
Q ss_pred ------hhcc------CcHHHHHHHHhccChhHHHHHHHHHHHhhccCC----C-hh---H-HH----------------
Q 015939 303 ------SEEA------SCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK----D-AR---V-KE---------------- 345 (398)
Q Consensus 303 ------~~~~------g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~----~-~~---~-~~---------------- 345 (398)
...+ ..+..++.++..+.++..++++.-|+.-...+. + +. + ..
T Consensus 425 dtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~ 504 (866)
T KOG1062|consen 425 DTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEE 504 (866)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCcccc
Confidence 2222 457777777777656666666555554322110 0 00 0 00
Q ss_pred ---HHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhc
Q 015939 346 ---AVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 346 ---~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~ 381 (398)
.+-+..++.+|..++.+. .+..+|.-|..+|-.|+.
T Consensus 505 ~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 505 EPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 111244677777777543 345778888665554444
No 175
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.90 E-value=0.19 Score=42.31 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred CChHHHHHHHhc--CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcch
Q 015939 179 NCLPLFLEILRE--GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSV 255 (398)
Q Consensus 179 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~ 255 (398)
..+..++..|.. .+.++|..+..++..+- +..+....+ -+-+.+-.++..+ +.+....+..++..|= ...+.
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHH
Confidence 345667777764 58899999999888774 334444322 2233334444444 4456777788888775 45566
Q ss_pred HHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChh-HHHHHHHHHH
Q 015939 256 KAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKT-AREDAVVVIW 332 (398)
Q Consensus 256 ~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~-~~~~a~~~L~ 332 (398)
...+. ..|.++.++.++.+...+..+...++.+|..-|.+...|..|.. .+++.|-+.++. .++. .+..|+-+|.
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 67776 78999999999963356888888999999999998888888884 578888888854 4455 6777776664
No 176
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.86 E-value=1.3 Score=40.06 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=123.7
Q ss_pred CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHH-Hhc------cc----cCHHHHHHHHHHHHHhcCCcchHHH
Q 015939 191 GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFD-YLK------LA----EDQALNDAILSILITLSVYRSVKAQ 258 (398)
Q Consensus 191 ~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~-lL~------~~----~~~~~~~~a~~aL~~Ls~~~~~~~~ 258 (398)
.+++.|+.|..-|..--.. ++....+..+.|.+..|+. +.+ .+ ....-+.+|+..|-.++++++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3677888777666644333 6777777777888777764 222 11 0113455777777788999999999
Q ss_pred HHHcCChHHHHHHhcccCc---chhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 259 LVELGMVQILTRILSDSRT---QILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~---~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
+.++...-.|..+|...+. -+.++-.+++++..|.+ +++....+. ....+|.-++.|+.|+...+.-|.-++..
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999988888888853222 23466689999999998 445556666 56899999999999999999999999988
Q ss_pred hhccCCChhHHHHHHh--------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 334 MCCVYKDARVKEAVVN--------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 334 l~~~~~~~~~~~~~~~--------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+-.. +.....+.+ .-++..++..|..+.+++.-+..-.+-..|++
T Consensus 166 IL~d---d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 166 ILLD---DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHS---HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred HHcc---hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 7542 121121111 33556666666566677777776666666665
No 177
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.65 E-value=0.013 Score=38.80 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=32.5
Q ss_pred cccCccc--cCCCceecCCC-----cccchhHHHHHHhc-CCCCCCccc
Q 015939 15 RCPISLD--VMKSPVSLCTG-----VTYDRSSIQHWLES-GHDTCPATM 55 (398)
Q Consensus 15 ~Cpi~~~--~~~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~CP~~~ 55 (398)
.|-||.+ --.+|.+.||. |.|=+.|+.+|+.. +..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778875 56789999985 67889999999964 466899985
No 178
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.62 E-value=0.011 Score=39.17 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=24.5
Q ss_pred cccccCccccCCCceecC-CCcc--cchhHHHHHH-hcCCCCCCccccc
Q 015939 13 LFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWL-ESGHDTCPATMQI 57 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~-~~~~~~CP~~~~~ 57 (398)
.+.|||+.+.|+-||-.. |.|. ||-...-+.. ..+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 468999999999999976 9887 6654433333 3334579999864
No 179
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.61 E-value=0.78 Score=44.83 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=115.5
Q ss_pred HHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-------ChhhHHHHHHHHHHhhcCchhH--HHhhchhh
Q 015939 151 ESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-------NLDSKIGSIKILDSISLDNESK--RRVLETEN 221 (398)
Q Consensus 151 ~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g 221 (398)
..|+-....++.+++....+|+. +-++-+.+.+-++|..+ +.-.+.-+..+|..++.+++.. ..+ -+
T Consensus 29 fAaLllVTK~vK~~Di~a~~kk~-vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~---v~ 104 (698)
T KOG2611|consen 29 FAALLLVTKFVKNDDIVALNKKL-VFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM---VS 104 (698)
T ss_pred HHHHHHHHHHhcccchhhhhhhh-HHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH---HH
Confidence 55666666777777766666777 55776788888888644 2334566777888888887533 333 24
Q ss_pred HHHHHHHHhccccCHH------HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-
Q 015939 222 LLSALFDYLKLAEDQA------LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT- 294 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~------~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~- 294 (398)
.||.|..+++.+.+++ ....+-.+|+.++..+.....++..|+++.+.++-.. .+..--...++.++-.+..
T Consensus 105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~~d~alal~Vlll~~~~ 183 (698)
T KOG2611|consen 105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGSHDMALALKVLLLLVSK 183 (698)
T ss_pred hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCchhHHHHHHHHHHHHHh
Confidence 6899999998764555 7889999999999999999999999999999977642 2222223344444444332
Q ss_pred ---CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 295 ---CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 295 ---~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
.++....+.+ .|..+..=+...+...+-..+.+|..+-
T Consensus 184 ~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 184 LDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred cccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2233333331 2444444444456666777788887543
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.59 E-value=3.8 Score=43.56 Aligned_cols=241 Identities=17% Similarity=0.177 Sum_probs=130.3
Q ss_pred HHHHHHHHHcCC---CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc-cC----CcHHHHHHHHHHHH
Q 015939 87 VRVWIEKIKSEN---ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK-RR----SEIAVLESAVRVLN 158 (398)
Q Consensus 87 i~~l~~~l~~~~---~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~-~~----~~~~~~~~al~~L~ 158 (398)
+..++..|.+-. ...+.....++.|...++- +.||+.+.+. |+++.|+..|... .. ....+.+..+.++.
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 445566654421 1112223344445555555 8999999999 9999999988632 11 12445577777666
Q ss_pred hhhcccchH--HHhhHhhhc-------cCCChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCchhH-HHhhchhhHHH
Q 015939 159 LIVNENGVK--EKLNRLILN-------TYNCLPLFLEILREG----NLDSKIGSIKILDSISLDNESK-RRVLETENLLS 224 (398)
Q Consensus 159 ~l~~~~~~~--~~~~~~il~-------~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~ 224 (398)
.+....... ...... .. ...-+..|++.+.+. +..+....+++|-.|+..+..+ ..+++ -+.
T Consensus 197 ~ll~ea~~~~~~~~~~~-~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---~F~ 272 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSS-SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---HFK 272 (802)
T ss_pred HHHHHHhhhhhhhcccc-ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---HHH
Confidence 655432211 000000 00 112366666666644 5777888889999999885443 33332 244
Q ss_pred HHHHHhcc--ccCHHHHHHHHHHHHHhcC-------CcchHHHHHHcCChHHHHHHhcccCc------c--------hhh
Q 015939 225 ALFDYLKL--AEDQALNDAILSILITLSV-------YRSVKAQLVELGMVQILTRILSDSRT------Q--------ILT 281 (398)
Q Consensus 225 ~Lv~lL~~--~~~~~~~~~a~~aL~~Ls~-------~~~~~~~~v~~g~v~~Lv~lL~~~~~------~--------~~~ 281 (398)
+.+++=+- ...++. ..-+..+..++. +..-|..+++.|.+...++.|....+ + ...
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 44443221 111111 223445555532 22467778899999999988853211 1 234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhc
Q 015939 282 VEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCC 336 (398)
Q Consensus 282 ~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~ 336 (398)
...++.+|.-|+.+....+.+.. .++++. +..|... +..+-..|=.+|-.++.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~-lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIA-EQLLPL-LHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH-hhHHHH-HHHhhcCCCccchHHHHHHHHHHHhc
Confidence 45788999999886555555553 467744 4445442 23333344444444443
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.50 E-value=1.8 Score=40.85 Aligned_cols=194 Identities=19% Similarity=0.166 Sum_probs=113.0
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC---cchH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVY---RSVK 256 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~---~~~~ 256 (398)
+...++.|...+...|+.+...|..+....-....+.. ...+++.+.+.++.+ ..+.+..|++++.-|+.. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 44555666666788999999998877655333334432 244788888889888 446677777777766543 3455
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHH---HhC-CHHHHHHHhhccCcHHHHHH--HHhc-c---------C
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI---VAT-CSEGRLALSEEASCAGRVVE--RVMK-V---------G 320 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~---La~-~~~~~~~i~~~~g~v~~Lv~--~l~~-~---------~ 320 (398)
..+++. ..|.|..++.+.+....++..++.+|.. ++. .++.....++ .+..+.. ..+. + +
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCc
Confidence 566654 7889999997544444554555544444 333 3333332221 1221111 1121 1 1
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
+.+...|+..-.-|...-+ ........ ...++.|..+|++. +..+|-.|...|-.+-+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~-~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLP-DSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cHHHHHHHHHHHHHHhcCC-HHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 2344444444333332222 22222222 44689999999977 899999999999888773
No 182
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.44 E-value=1.9 Score=40.61 Aligned_cols=180 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC---chhHHHhhchhhHH
Q 015939 147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD---NESKRRVLETENLL 223 (398)
Q Consensus 147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~g~i 223 (398)
.+.++.++..|..+.......+..... ....+..+.+.++.|..+-+..|+.++..++.. .+....+. ....
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~---~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~--~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDR---RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF--EELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH--HHHH
Confidence 445688888877776543321111010 224678888889888777777788887766544 23334443 3578
Q ss_pred HHHHHHhccc-cCHHHHHHHHHHHHHhcC---Cc-chHHHHHHcCChHHHHH--Hhcc--------cCcchhhHHHHHHH
Q 015939 224 SALFDYLKLA-EDQALNDAILSILITLSV---YR-SVKAQLVELGMVQILTR--ILSD--------SRTQILTVEKSIKM 288 (398)
Q Consensus 224 ~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~---~~-~~~~~~v~~g~v~~Lv~--lL~~--------~~~~~~~~~~al~~ 288 (398)
|.|.+++.++ .+++++..++.+|.-++. .+ +...... ..+..+.. .++. ..+++.++..|+..
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 8899998876 245666666666665532 22 2222111 12232221 1211 11235677777777
Q ss_pred HHHHhC-CHH-HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 289 LSIVAT-CSE-GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 289 L~~La~-~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
-.-|.. .+. ...... ...++.|+.+|...+..+|..|-.+|+-|.
T Consensus 210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666654 232 233444 257999999999999999988877776553
No 183
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.39 E-value=1.2 Score=42.94 Aligned_cols=236 Identities=18% Similarity=0.201 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHH-HHHhhhc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVN 162 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~-~L~~l~~ 162 (398)
.+.+.+++..|.++.. ...+..++-.|..-+.+ +.-|..+... |.+..++..+....+ +. ....++. ++..++.
T Consensus 20 ~Dev~ylld~l~~~~~-~s~Rr~sll~La~K~~~-~~Fr~~~ra~-g~~~~l~~~l~~~~~-d~-~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSS-SSVRRSSLLELASKCAD-PQFRRQFRAH-GLVKRLFKALSDAPD-DD-ILALATAAILYVLSR 94 (361)
T ss_pred HHHHHHHHhhcccCCC-ccHHHHHHHHHHHHhCC-HHHHHHHHHc-CcHHHHHHHhccccc-hH-HHHHHHHHHHHHHcc
Confidence 5788999999984333 34677888888887755 7888999988 999999999965232 21 2333333 3444444
Q ss_pred ccchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhch-hhHHHHHHHHhcc--------
Q 015939 163 ENGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLET-ENLLSALFDYLKL-------- 232 (398)
Q Consensus 163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~lL~~-------- 232 (398)
+... ..++.+.+....++.++.-. ..+.....- ...+..+-.. ...+...-..+..
T Consensus 95 d~~~-----~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 95 DGLN-----MHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred CCcc-----hhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccC
Confidence 3332 23234566677777777611 000000000 0000111000 1111112222211
Q ss_pred ccCHHHHHHHHHHHHHhc---------------CCcchHHHHHHcCChHHHHHHhcc----c----------CcchhhHH
Q 015939 233 AEDQALNDAILSILITLS---------------VYRSVKAQLVELGMVQILTRILSD----S----------RTQILTVE 283 (398)
Q Consensus 233 ~~~~~~~~~a~~aL~~Ls---------------~~~~~~~~~v~~g~v~~Lv~lL~~----~----------~~~~~~~~ 283 (398)
.....-+..|+.+|-.++ ..+..+..+-+.|+++.+++++.+ . ..+-...+
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 012233445555555552 112356667788899999999851 1 01113557
Q ss_pred HHHHHHHHHhC-CHHHHHHHhhcc-CcHHHHHHH-Hhc---cChhHHHHHHHHHHHhhccC
Q 015939 284 KSIKMLSIVAT-CSEGRLALSEEA-SCAGRVVER-VMK---VGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 284 ~al~~L~~La~-~~~~~~~i~~~~-g~v~~Lv~~-l~~---~~~~~~~~a~~~L~~l~~~~ 338 (398)
.++.+|.+.+. ++++........ +.++.+... +.. ........+++++.|+++++
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 89999999775 445555554332 333333333 332 23334678999999999875
No 184
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=3.6 Score=42.40 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
...+++|.+.|..++.+ .+-.|+..|..+++.+|+|--.++ |.+..++.. ++ +-.++-..+..+.+|+.-
T Consensus 180 r~~FprL~EkLeDpDp~--V~SAAV~VICELArKnPknyL~LA------P~ffklltt-Ss-NNWmLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPS--VVSAAVSVICELARKNPQNYLQLA------PLFYKLLVT-SS-NNWVLIKLLKLFAALTPL 249 (877)
T ss_pred hhhHHHHHHhccCCCch--HHHHHHHHHHHHHhhCCccccccc------HHHHHHHhc-cC-CCeehHHHHHHHhhcccc
Confidence 45678899999988876 888899999999999888765443 666777765 22 234556677778777754
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCC-hhhHHHHHHHHH--HhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGN-LDSKIGSIKILD--SISLD-NESKRRVLETENLLSALFDYLKLAEDQALN 239 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~--~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 239 (398)
.+- .. .-.++.|.+++++.. ..+.-.++.++- +++.. +++-+.+ .-++..|--++.+. |+.++
T Consensus 250 EPR---Lg------KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fieds-DqNLK 316 (877)
T KOG1059|consen 250 EPR---LG------KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDS-DQNLK 316 (877)
T ss_pred Cch---hh------hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcC-CccHH
Confidence 332 12 236899999998874 333444444443 33333 2333333 22566777777777 89999
Q ss_pred HHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh
Q 015939 240 DAILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS 303 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~ 303 (398)
--++-+++.+..... .... --+.+++.|. +.|+.++-.|+..|..+.. .+|..+|+
T Consensus 317 YlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~--DkD~SIRlrALdLl~gmVs-kkNl~eIV 373 (877)
T KOG1059|consen 317 YLGLLAMSKILKTHPKAVQA-----HKDLILRCLD--DKDESIRLRALDLLYGMVS-KKNLMEIV 373 (877)
T ss_pred HHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhc--cCCchhHHHHHHHHHHHhh-hhhHHHHH
Confidence 999999999876443 2211 2356788884 4789999999999999886 44545544
No 185
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.34 E-value=2.4 Score=44.93 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhh-hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFAT-GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~-~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
.+...+++|...+.+.|.+..|+..+..+.. .++..+..+. ..++.++.-|+. .- .+-.|++++..++.+.
T Consensus 569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~---~~L~il~eRl~n---Ei--TRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP---RTLPILLERLGN---EI--TRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhc---hh--HHHHHHHHHHHHHhcc
Confidence 3445666777766666777788877776443 3333333333 445666666655 11 3467888888777643
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
-.- ...-.-..+++.+.+++.......+.....++..|..+- ....... .-++..+-.+++.. +....+.|
T Consensus 641 l~i----~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~el~~Lises-dlhvt~~a 713 (1233)
T KOG1824|consen 641 LDI----DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL--EAVLVELPPLISES-DLHVTQLA 713 (1233)
T ss_pred cee----ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHhhhhhhHH-HHHHHHHH
Confidence 320 100112356888888888777777777777777776552 1212221 23455566666666 77788888
Q ss_pred HHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 243 LSILITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
...|..+.........-+..-.++.++.++++
T Consensus 714 ~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 714 VAFLTTLAIIQPSSLLKISNPILDEIIRLLRS 745 (1233)
T ss_pred HHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence 99999888777766666666678888888863
No 186
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0032 Score=41.42 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.7
Q ss_pred cccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
-|.||.+--.|.|+-.|||- .|..|=.+-|..++..||.||.+++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 59999999999999999995 4667766655546778999998743
No 187
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=1.2 Score=48.06 Aligned_cols=220 Identities=13% Similarity=0.094 Sum_probs=132.8
Q ss_pred cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHH
Q 015939 146 EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLL 223 (398)
Q Consensus 146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i 223 (398)
+..++..+-++|..++...+...-.... ...+...|.+..++.+...+.....+|..|-.. + +....+. ..|
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~---i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I 740 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQR---IDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLI 740 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHH---HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHH
Confidence 4456688999998888763321000011 123455666666677777888888888887665 2 4555553 356
Q ss_pred HHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcC------ChHHHHHHhccc--CcchhhHHHHHHHHHHHhCC
Q 015939 224 SALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELG------MVQILTRILSDS--RTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 224 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g------~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~~ 295 (398)
+.++=.++.. +...++.+..+|..+.. .....+.| .|...+.++... .+...++...+-++..+...
T Consensus 741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 6666666666 88899999999998873 11112222 444444444321 12223332224444444432
Q ss_pred HHH-H-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHH
Q 015939 296 SEG-R-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCG 373 (398)
Q Consensus 296 ~~~-~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~ 373 (398)
..+ - ...+ .+.+..+..+|.+.++.+.+.|++.+..++..- ++....-...-.++.++.+.+.+ +-.+|.+..
T Consensus 816 ~~~~ld~~~l--~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr 890 (1176)
T KOG1248|consen 816 FKNILDDETL--EKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--PEECLSPHLEELLPSLLALSHDH-KIKVRKKVR 890 (1176)
T ss_pred HhccccHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--CHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 111 1 1222 255666777777899999999999999988754 33333333344788888877765 678888888
Q ss_pred HHHHHHhc
Q 015939 374 DLVKVLGK 381 (398)
Q Consensus 374 ~lL~~l~~ 381 (398)
.+|..|-+
T Consensus 891 ~LlekLir 898 (1176)
T KOG1248|consen 891 LLLEKLIR 898 (1176)
T ss_pred HHHHHHHH
Confidence 88887765
No 188
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.28 E-value=0.017 Score=37.57 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=22.0
Q ss_pred ccCccccC--CCceec--CCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 16 CPISLDVM--KSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 16 Cpi~~~~~--~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
||+|-+.| +|--.. +||+.+||.|..+....+...||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888887 222233 49999999998888875677899999874
No 189
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.27 E-value=0.15 Score=39.13 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhc
Q 015939 196 KIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILS 273 (398)
Q Consensus 196 ~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~ 273 (398)
|..+...|...+.. ......+ ...+++++..+.+. +..++..|+.+|++++........-.-...++.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l---~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL---DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH---HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556655444 2222222 46899999999999 999999999999999854332211122447888888884
Q ss_pred ccCcchhhHHHHHHHHHHHhC
Q 015939 274 DSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 274 ~~~~~~~~~~~al~~L~~La~ 294 (398)
+ .++.|+ .++..|.+|-+
T Consensus 79 D--~d~~Vr-~~a~~Ld~llk 96 (97)
T PF12755_consen 79 D--PDENVR-SAAELLDRLLK 96 (97)
T ss_pred C--CchhHH-HHHHHHHHHhc
Confidence 3 556654 56677777643
No 190
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.011 Score=55.85 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCcccccCccccCCCce-----e---cCCCcccchhHHHHHHhcC------CCCCCcccccCC
Q 015939 11 PNLFRCPISLDVMKSPV-----S---LCTGVTYDRSSIQHWLESG------HDTCPATMQILS 59 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv-----~---~~~g~~~~r~~i~~~~~~~------~~~CP~~~~~l~ 59 (398)
-.++.|-||.+.-.+++ . .+|.|+||-.||.+|-... .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35789999999999998 3 4599999999999997321 367999997644
No 191
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.24 E-value=1 Score=47.63 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=143.0
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939 89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE 168 (398)
Q Consensus 89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~ 168 (398)
.+++.+.+++-+ -+.-|..-|-.-.-.+..+-+.=.+. ..+..|+.+|++ .++ +++..|+++|.-++..-..+
T Consensus 9 ~LlekmtssDKD--fRfMAtsDLm~eLqkdsi~Ld~dSe~-kvv~~lLklL~D-~ng--EVQnlAVKClg~lvsKvke~- 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD--FRFMATSDLMTELQKDSIKLDDDSER-KVVKMLLKLLED-KNG--EVQNLAVKCLGPLVSKVKED- 81 (1233)
T ss_pred HHHHHccCCCcc--hhhhhHHHHHHHHHhhhhhccccchh-HHHHHHHHHHhc-cCc--HHHHHHHHHHHHHHhhchHH-
Confidence 578888888765 88888876654332322222222222 678888999987 444 46699999999887432221
Q ss_pred HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccc----c-CHHHHHHH
Q 015939 169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLA----E-DQALNDAI 242 (398)
Q Consensus 169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~-~~~~~~~a 242 (398)
+-. ..+..|..-+-+|....|.-+.-.|. .++.-+........ ..+++.+..-|... . ...++-.+
T Consensus 82 --~le-----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~ 153 (1233)
T KOG1824|consen 82 --QLE-----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEV 153 (1233)
T ss_pred --HHH-----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHH
Confidence 111 12333333333444444433333333 33333321111122 34445555444432 1 22255566
Q ss_pred HHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cC
Q 015939 243 LSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VG 320 (398)
Q Consensus 243 ~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~ 320 (398)
+..|..+-+ ..+--.. ...+....++.-++ +....++.+|+.+|..|+..- ++.... +.+..|++-|.. .+
T Consensus 154 lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q 226 (1233)
T KOG1824|consen 154 LDILADVLSRFGTLLPN-FHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQ 226 (1233)
T ss_pred HHHHHHHHHhhcccCcc-hHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCc
Confidence 666654432 2221111 34456666777774 356778899999999998721 222222 234445554443 44
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH---hhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM---QSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l---~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+....--+.+|..+|..++.+-.. --...+|.+.... +.+ +++.|+.....+..|=+
T Consensus 227 ~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 227 MSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLR 286 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHH
Confidence 555555667777777765421111 1133556666666 444 78899999887777655
No 192
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.61 Score=47.67 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=114.8
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc--ch
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR--SV 255 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~ 255 (398)
.|.+..++....+.+..+|.+.+.+|..|.....-.+--+. .+....+..-|.+. .|.++..|+.+|..+-.++ ++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc
Confidence 35677777777788899999999999999885322222233 46777777767776 7889999999999997432 23
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc----CcHHHHHHHH--hc---cChhHHHH
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA----SCAGRVVERV--MK---VGKTARED 326 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~----g~v~~Lv~~l--~~---~~~~~~~~ 326 (398)
+ .++..+..+++ .+++++|++.++ .+++.++.....|++.+ |++..++.-- .+ ........
T Consensus 162 ~------~v~n~l~~liq-nDpS~EVRRaaL---snI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~kr 231 (892)
T KOG2025|consen 162 C------PVVNLLKDLIQ-NDPSDEVRRAAL---SNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKR 231 (892)
T ss_pred c------cHHHHHHHHHh-cCCcHHHHHHHH---HhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 2 36677888887 467888888766 56666555555554332 3444333211 00 11111111
Q ss_pred HHHHH-HHhhccCCChh----HHHHHHh------cCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 327 AVVVI-WSMCCVYKDAR----VKEAVVN------SNGLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 327 a~~~L-~~l~~~~~~~~----~~~~~~~------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
+.+| |.+-. ++.+ .+..+.. .|-+.-++..|+...+.++..+|...|..
T Consensus 232 -v~LlewgLnD--Re~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 232 -VLLLEWGLND--REFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred -HHHHHHhhhh--hhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1111 11211 1111 2222333 78888999999988788888888776665
No 193
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.19 E-value=0.26 Score=41.52 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=92.9
Q ss_pred HHHHHHHhhh-ccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-
Q 015939 132 VEAVFGVLNR-KRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD- 209 (398)
Q Consensus 132 v~~L~~lL~~-~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~- 209 (398)
+..++..|.. ...++ ++..++-++..+. +...+..+.. +-+.+-..+..++.+....+..++..|-..
T Consensus 5 l~~lL~~L~~~~~~~~--~r~~a~v~l~k~l--~~~~~~~~~~------~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEE--VRSHALVILSKLL--DAAREEFKEK------ISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp CCHHHHHHHCTTTSCC--HHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhcccCCCHh--HHHHHHHHHHHHH--HHhHHHHHHH------HHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 4455555543 12333 3366666666663 1111111121 233444455555666788899999988776
Q ss_pred chhHHHhhchhhHHHHHHHHhc--cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHH
Q 015939 210 NESKRRVLETENLLSALFDYLK--LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSI 286 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al 286 (398)
++....+....|.++.++.+.. .. +...+.+++.+|..-|.+.+.|..+.+ .+++.|-++++. +.++. ++..|+
T Consensus 75 ~dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~-~~~~~~ir~~A~ 151 (157)
T PF11701_consen 75 PDVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKN-SKDDSEIRVLAA 151 (157)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTT-CC-HH-CHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHcc-ccchHHHHHHHH
Confidence 6777777766899999999998 44 778888888888877777655555544 488999999953 34444 777777
Q ss_pred HHHH
Q 015939 287 KMLS 290 (398)
Q Consensus 287 ~~L~ 290 (398)
..|.
T Consensus 152 v~L~ 155 (157)
T PF11701_consen 152 VGLC 155 (157)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 194
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.17 E-value=0.069 Score=42.31 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=57.6
Q ss_pred CChHHHHHHHh-cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 179 NCLPLFLEILR-EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 179 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
..+..|+++|. +.++.+..-|+.-|+.+... ++.+..+.. .|+-..+..++.++ |++++..|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHE-DPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 46899999995 44778888899999988887 777777765 89999999999998 9999999999987763
No 195
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.17 E-value=4 Score=43.41 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=139.6
Q ss_pred hhhhcCCcHHHHHHHhhhccC--CcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh----cCC----h
Q 015939 124 FLASYGGFVEAVFGVLNRKRR--SEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR----EGN----L 193 (398)
Q Consensus 124 ~i~~~~g~v~~L~~lL~~~~~--~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~----~~~----~ 193 (398)
.+.+. |++..|+.++.+-.+ .+.......+..|...+.- ..||+. +.+.|+++.|++.|. .++ .
T Consensus 112 v~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv----~~NR~~-Ll~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 112 VLAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV----KVNRRA-LLELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred HhhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh----HHHHHH-HHHcCCHHHHHHHHHHHHhCccccccc
Confidence 34455 999999999976321 2334445555666555543 346787 667999999999985 323 5
Q ss_pred hhHHHHHHHHHHhhcCch-hHHHh--h--c-------hhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchHHH
Q 015939 194 DSKIGSIKILDSISLDNE-SKRRV--L--E-------TENLLSALFDYLKLA---EDQALNDAILSILITLSVYRSVKAQ 258 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~-~~~~i--~--~-------~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~~~ 258 (398)
++-+....++..|..... ..... . . ...-+..|++.+.++ .++.+....+++|-.|+.+++.+..
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 777777778877765522 11111 0 0 122366777777654 4688899999999999977664433
Q ss_pred -HHHcCChHHHHHHhc--c-cCcch-hhHHHHHHHHHHHhCC---HHHHHHHhhccCcHHHHHHHHhccCh--------h
Q 015939 259 -LVELGMVQILTRILS--D-SRTQI-LTVEKSIKMLSIVATC---SEGRLALSEEASCAGRVVERVMKVGK--------T 322 (398)
Q Consensus 259 -~v~~g~v~~Lv~lL~--~-~~~~~-~~~~~al~~L~~La~~---~~~~~~i~~~~g~v~~Lv~~l~~~~~--------~ 322 (398)
+++. +.+.+++=. . ...+. -..+..+.+..++-.+ ..-|+.++ ..|.+...+.+|...-+ +
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~~s~e 342 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNTDSPE 342 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccCCCHH
Confidence 3331 222222111 0 01111 2223333333444332 34566777 56999999999876322 2
Q ss_pred H--------HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHHHHHHHhc
Q 015939 323 A--------REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 323 ~--------~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~lL~~l~~ 381 (398)
- -..++..|.-|+... ... +.++..++++ ++..| +...+..+=.-|-.+|..+++
T Consensus 343 Wk~~l~~psLp~iL~lL~GLa~gh--~~t-Q~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 343 WKEFLSRPSLPYILRLLRGLARGH--EPT-QLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhcC--HHH-HHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2 246788888888753 223 3345566664 44555 444334444455556665555
No 196
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=2 Score=44.70 Aligned_cols=140 Identities=12% Similarity=0.150 Sum_probs=76.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc--hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHH-
Q 015939 185 LEILREGNLDSKIGSIKILDSISLDNESKRRVLE--TENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLV- 260 (398)
Q Consensus 185 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v- 260 (398)
+.+|-.++.+.......+|..++.+-+.-..++. ....+..+..+.. +..++..|+.+|..+-.+++ |.+.+.
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 3344444555555555555555544222222221 0122333333322 33466666666666654443 322220
Q ss_pred ---------HcCCh----HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939 261 ---------ELGMV----QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA 327 (398)
Q Consensus 261 ---------~~g~v----~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a 327 (398)
+..+| ..+++.|+ ++|..++++|+..+..|.. +.|...++. .|+.+|...++..+...
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~--DpD~SIkrralELs~~lvn-~~Nv~~mv~------eLl~fL~~~d~~~k~~~ 405 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLK--DPDVSIKRRALELSYALVN-ESNVRVMVK------ELLEFLESSDEDFKADI 405 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhc-cccHHHHHH------HHHHHHHhccHHHHHHH
Confidence 11111 24666774 4789999999999999886 445555542 48888888888888777
Q ss_pred HHHHHHhhc
Q 015939 328 VVVIWSMCC 336 (398)
Q Consensus 328 ~~~L~~l~~ 336 (398)
+.-+..++-
T Consensus 406 as~I~~laE 414 (866)
T KOG1062|consen 406 ASKIAELAE 414 (866)
T ss_pred HHHHHHHHH
Confidence 766666653
No 197
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=1.2 Score=45.91 Aligned_cols=244 Identities=18% Similarity=0.195 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
.+..+.-.+.++-.. +.+..... |.++.|-+++.+ +++.++.+|+++|..+.....+. .........+.
T Consensus 137 vRktaa~~vakl~~~---~~~~~~~~-gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~~~~----~~~~l~~~~~~ 205 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDI---DPDLVEDS-GLVDALKDLLSD---SNPMVVANALAALSEIHESHPSV----NLLELNPQLIN 205 (734)
T ss_pred HHHHHHHHHHHhhcC---Chhhcccc-chhHHHHHHhcC---CCchHHHHHHHHHHHHHHhCCCC----CcccccHHHHH
Confidence 566666566655433 55667777 999999999986 34567899999999887655420 11011222333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
.++..|. ...-..-+.+|..++.. + +.++. ...+..+...|.+. +..++-.+..+++.+..........+
T Consensus 206 ~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~~~~~~ 277 (734)
T KOG1061|consen 206 KLLEALN---ECTEWGQIFILDCLAEYVPKDSREA----EDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQVNELL 277 (734)
T ss_pred HHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHHHHHHH
Confidence 4443333 23333334555555544 1 11111 33455566666665 55566666666666654443333333
Q ss_pred HcCChHHHHHHhccc---------------------------------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939 261 ELGMVQILTRILSDS---------------------------------RTQILTVEKSIKMLSIVATCSEGRLALSEEAS 307 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~---------------------------------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g 307 (398)
-...-++|+.+++.. ++--.+...=+.++..++. +++.+++.
T Consensus 278 ~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~-~~nl~qvl---- 352 (734)
T KOG1061|consen 278 FKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN-DANLAQVL---- 352 (734)
T ss_pred HHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh-HhHHHHHH----
Confidence 333445555555320 0111222223333333332 22222221
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.-+.+.-...+....+.+++++.+++... .+. .+.++.|+.+++..-+-.+++ +...++.+-+
T Consensus 353 --~El~eYatevD~~fvrkaIraig~~aik~-----e~~---~~cv~~lLell~~~~~yvvqE-~~vvi~dilR 415 (734)
T KOG1061|consen 353 --AELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQS---NDCVSILLELLETKVDYVVQE-AIVVIRDILR 415 (734)
T ss_pred --HHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hhh---hhhHHHHHHHHhhcccceeee-hhHHHHhhhh
Confidence 11222233357777788899988887532 111 778888888888663444443 4444444433
No 198
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.06 E-value=1.7 Score=42.67 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=104.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhcCc----hhHHHhhchhhHHHHHHHHhccc------cCHHHHHHHHHHHHHhcCCc
Q 015939 184 FLEILREGNLDSKIGSIKILDSISLDN----ESKRRVLETENLLSALFDYLKLA------EDQALNDAILSILITLSVYR 253 (398)
Q Consensus 184 Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~Ls~~~ 253 (398)
+..++...+.+-|..|...+..+..++ .+|..+.+ .=+++.+=++|.++ .+.--+.-++..|..+|+.+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 445555556777777777778888774 35666766 45577888888764 12234567777888888887
Q ss_pred c--hHHHHHHcCChHHHHHHhcccCcchh------hHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHH
Q 015939 254 S--VKAQLVELGMVQILTRILSDSRTQIL------TVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAR 324 (398)
Q Consensus 254 ~--~~~~~v~~g~v~~Lv~lL~~~~~~~~------~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~ 324 (398)
+ ....|++ .||.|.+++.. ..|+. +.+.+-.+|..+++.+.|.+.+. ..|+++.+.++-.. +..-.+
T Consensus 95 ElAsh~~~v~--~IP~llev~~~-~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSK-GIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHh-cCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhH
Confidence 6 3445554 69999999962 23443 88999999999999999999998 46999999987654 445556
Q ss_pred HHHHHHHHHhh
Q 015939 325 EDAVVVIWSMC 335 (398)
Q Consensus 325 ~~a~~~L~~l~ 335 (398)
..|+.++.-..
T Consensus 171 alal~Vlll~~ 181 (698)
T KOG2611|consen 171 ALALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 199
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=4.1 Score=41.95 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=82.0
Q ss_pred HHHHHHHhc----CChhhHHHHHHHHHHhhcCc----hhHH---HhhchhhHHHHHHHHhcc-ccCHHHHHHHHHHHHHh
Q 015939 182 PLFLEILRE----GNLDSKIGSIKILDSISLDN----ESKR---RVLETENLLSALFDYLKL-AEDQALNDAILSILITL 249 (398)
Q Consensus 182 ~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~----~~~~---~i~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~aL~~L 249 (398)
-.++.+|.. .++..+..-..+|..+.... .++. ..+. ..++-..+.+..+ +.++++...|+..|..+
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~-naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f 337 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAK-NAVLFEAISLAIHLDSEPELLSRAVNQLGQF 337 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 456666652 25566666666666443321 2221 1222 2233333443322 23678888999999888
Q ss_pred cCCcc-hHHHHH-H-------cC----C----hHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHH
Q 015939 250 SVYRS-VKAQLV-E-------LG----M----VQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRV 312 (398)
Q Consensus 250 s~~~~-~~~~~v-~-------~g----~----v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~L 312 (398)
-++.+ |.+.+. + .+ + .+.++..|. ...|..++++|+..|..+|. .++.+.|++ .+
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk-terDvSirrravDLLY~mcD-~~Nak~IV~------el 409 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK-TERDVSIRRRAVDLLYAMCD-VSNAKQIVA------EL 409 (938)
T ss_pred hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhc-hhhHHHHHH------HH
Confidence 65543 544432 1 11 1 223444442 36677889999999999986 566666663 36
Q ss_pred HHHHhccChhHHHHHHHHHHHhh
Q 015939 313 VERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 313 v~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
+..|.+.+...+|.-+.=.+-|+
T Consensus 410 LqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 410 LQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHhhcchHHHHHHHHHHHHHH
Confidence 77777777777776654444444
No 200
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.01 E-value=0.29 Score=42.60 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHc----------------CChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHH
Q 015939 238 LNDAILSILITLSVYRSVKAQLVEL----------------GMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSE 297 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~~~~~~~v~~----------------g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~ 297 (398)
....++.+|.||+..++.+..+.+. .++..|++.+.. ......-......+|.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 5566788888888887777765532 256667777743 11234566788999999999999
Q ss_pred HHHHHhhcc-Cc--HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh---cCCHHHHHHHHh
Q 015939 298 GRLALSEEA-SC--AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN---SNGLTKLLLVMQ 361 (398)
Q Consensus 298 ~~~~i~~~~-g~--v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~g~~~~Ll~~l~ 361 (398)
+|+.+.... +. +..|+-++...+..-+.-++++|.|+|... +.-..+.. .++++.|+.-|-
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~---~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT---DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH---hHHHHhcCchhhhhHHHHHhhcc
Confidence 999998543 33 666777777678888889999999999853 33344544 578888888775
No 201
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.96 E-value=0.78 Score=47.94 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
.+..|++.+-.....++..-. ..+-+++.+.+ .+ .++..-.---|.+.+...++ ..++ ++.
T Consensus 35 ~kidAmK~iIa~M~~G~dmss-------Lf~dViK~~~t-rd--~ElKrL~ylYl~~yak~~P~-----~~lL----avN 95 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSS-------LFPDVIKNVAT-RD--VELKRLLYLYLERYAKLKPE-----LALL----AVN 95 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHh-cC--HHHHHHHHHHHHHHhccCHH-----HHHH----HHH
Confidence 567777665543333333221 23334555543 22 33323333334444444432 2212 466
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVEL 262 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~ 262 (398)
.+.+=+.+.++.+|..|.+++..|-.. +.+ ..+++++.+++.++ ++.+++.|+-++.++=.-+ +....+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~----el~---~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVK----ELL---GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChH----HHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhcc
Confidence 777777888999998887777766442 222 35788899999988 8889999999988874322 2223478
Q ss_pred CChHHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939 263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~ 295 (398)
|.+..+..++. +++|.++.+|+.+|..+...
T Consensus 166 g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVA--DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhh--CCCchHHHHHHHHHHHhchh
Confidence 88888888884 47899999999999888653
No 202
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.94 E-value=0.17 Score=36.42 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh
Q 015939 238 LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE 304 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~ 304 (398)
-++++++++.++.+.+.....+-+.+.++.++++.. .++...++--|..+|..++...++.+.+.+
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~-~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAE-NSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHH-hCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 368899999999998888877778899999999997 356788999999999999999999988763
No 203
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.92 E-value=1.9 Score=36.98 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939 148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227 (398)
Q Consensus 148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 227 (398)
.++.+++.++.-|+..-++ + -...++.+...|++.++.+|..|+.+|..|...+-.|.. ...+..++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~--------~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l 69 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN--------L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH--------H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHH
Confidence 4568888888888764332 1 134689999999999999999999999999877533332 23347777
Q ss_pred HHhccccCHHHHHHHHHHHHHhcCC
Q 015939 228 DYLKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 228 ~lL~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
.+|.+. +++++..|..++..+...
T Consensus 70 ~~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHHh
Confidence 888887 899999999999999865
No 204
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.027 Score=49.13 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=42.7
Q ss_pred ccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCc--ccccCCCCCCcccHHHH
Q 015939 14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPA--TMQILSTKEFVPNLTLH 70 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~ 70 (398)
.+|||+.+....|++.. |+|.|++..|.+.+.. -.+-||+ |-+.+.-.++..++.+.
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE 250 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILE 250 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHH
Confidence 47999999999999875 9999999999999863 2345887 54555455555555443
No 205
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.62 E-value=0.42 Score=41.24 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHHhhhc------cCCcHHHHHHHHHHHH
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGVLNRK------RRSEIAVLESAVRVLN 158 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~lL~~~------~~~~~~~~~~al~~L~ 158 (398)
....+++.+.+... ..+.+..|+...+..+ .--+.+.+. ||+..|+.+|... ...+......++++|.
T Consensus 67 ~p~~~i~~L~~~~~----~~~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 67 SPEWYIKKLKSRPS----TSKILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp HHHHHHHHHTTT------HHHHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCc----cHHHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 45567777776654 2256666665554433 333455567 9999999999652 1123456688999999
Q ss_pred hhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhh
Q 015939 159 LIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSIS 207 (398)
Q Consensus 159 ~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 207 (398)
.+..+..+ ...++...+.+..++..|.+.+..++..++.+|..++
T Consensus 142 al~n~~~G----~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMNTKYG----LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHTSSHHH----HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHccHHH----HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98887665 5666888999999999999999999999999998775
No 206
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.60 E-value=4.3 Score=38.65 Aligned_cols=196 Identities=8% Similarity=0.037 Sum_probs=137.4
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH-----HHhhch-hhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK-----RRVLET-ENLLSALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~-----~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
..+.+..|+..|..-+.+.|..++.+..++... .+.+ ..+... ...+..| ++...+++.--.+-..|+..
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L---~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDIL---LRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHH---HHGGGSTTTHHHHHHHHHHH
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHH---HHHhcCccccchHHHHHHHH
Confidence 458899999999999999999999999988766 2332 234332 3333333 33334566777777888888
Q ss_pred cCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH-hCCHHHHHHHhhcc--CcHHHHHHHHhccChhHHHH
Q 015939 250 SVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV-ATCSEGRLALSEEA--SCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 250 s~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~--g~v~~Lv~~l~~~~~~~~~~ 326 (398)
...+...+.+.....+..+.+.+. .+.-++...|..+++.| ..+.....+..... ..+.....+|.+++--++..
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 888887888888889999999984 47889999999999995 55777766665321 45667778888899999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHh----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVN----SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|..|-.. +.+...|.+ ..-+..++.+|++. +..+|-.|=.+.|.+-.
T Consensus 229 slkLL~ellld---r~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 229 SLKLLGELLLD---RSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHS---GGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHc---hhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998764 333333322 33455555566655 77888888777777644
No 207
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.024 Score=51.23 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred cccCccc-cCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939 15 RCPISLD-VMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63 (398)
Q Consensus 15 ~Cpi~~~-~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l 63 (398)
.||.|+. .+.+|- +.+|||+.|-+|.-.-|..|...||.|+..|....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4888863 444552 237999999999999999888999999988876544
No 208
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.51 E-value=1.1 Score=38.46 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHH
Q 015939 192 NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRI 271 (398)
Q Consensus 192 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~l 271 (398)
++.+|.+++.+++.|+..-. .++ ...++.+...|+++ ++.+++.|+.+|..|-..+-.+.+ ...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~v--e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLV--EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHH--HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence 46788999999998887532 222 34678899999999 999999999999999766543321 2233677778
Q ss_pred hcccCcchhhHHHHHHHHHHHhCC
Q 015939 272 LSDSRTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 272 L~~~~~~~~~~~~al~~L~~La~~ 295 (398)
+. +++++++..|...+..+...
T Consensus 72 l~--D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LV--DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred Hc--CCCHHHHHHHHHHHHHHHHh
Confidence 84 57999999999999999874
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.49 E-value=0.58 Score=40.75 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=71.9
Q ss_pred CChHHHHHHHhcC------ChhhHHHHHHHHHHhhcCchhHHHhhch-hhH--HHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 179 NCLPLFLEILREG------NLDSKIGSIKILDSISLDNESKRRVLET-ENL--LSALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 179 g~i~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~--i~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
..+..|++.+..| ...-..+.+.+|.|++..++.|..+... .+. +..|+.+.++. +..-+..++.+|.|.
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHh
Confidence 4688888888762 3445678899999999999999999862 234 67777778888 887889999999999
Q ss_pred cCCcchHHHHHH---cCChHHHHHHhc
Q 015939 250 SVYRSVKAQLVE---LGMVQILTRILS 273 (398)
Q Consensus 250 s~~~~~~~~~v~---~g~v~~Lv~lL~ 273 (398)
|...+....+.. .+.+|.|+--|.
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999888777764 355666555553
No 210
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.48 E-value=0.022 Score=51.81 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=37.6
Q ss_pred CcccccCccccCCC---ceecCCCcccchhHHHHHHhcCC--CCCCcccc
Q 015939 12 NLFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGH--DTCPATMQ 56 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~CP~~~~ 56 (398)
.-|+||+.++.-.| ||.+.|||..-++++.+.-..|. ..||-|..
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34799999998876 99999999999999999887764 35888854
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.37 E-value=0.12 Score=41.06 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=56.0
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA 293 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La 293 (398)
..++..|+++|....|+....-|+.=|..++..- ..+..+-+.|+=..++++|. +++++|+..|+.++..|-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 4578999999965547888888888899998654 45555558888899999994 589999999999887653
No 212
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.17 E-value=0.014 Score=41.90 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=22.5
Q ss_pred cccccCccccCC-C---ceec----CCCcccchhHHHHHHhc--C-C-------CCCCcccccCC
Q 015939 13 LFRCPISLDVMK-S---PVSL----CTGVTYDRSSIQHWLES--G-H-------DTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~-d---Pv~~----~~g~~~~r~~i~~~~~~--~-~-------~~CP~~~~~l~ 59 (398)
+..|+||...+. + |++. .||++|=..|+.+||.. + . ..||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998765 2 4443 58999999999999852 1 1 24999988764
No 213
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.17 E-value=0.023 Score=53.28 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=41.6
Q ss_pred cccCccccCCCceecCCCcccchhHHHHHHh-cCCCCCCcccccCCCCC
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLE-SGHDTCPATMQILSTKE 62 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~~~~ 62 (398)
.|-||.+-=+|=-+=+|||-.|-.|+..|.. .+..+||.||..++...
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 6999999999988889999999999999984 34678999998877543
No 214
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.16 E-value=0.01 Score=60.16 Aligned_cols=45 Identities=18% Similarity=0.404 Sum_probs=26.5
Q ss_pred cccCccccCCCceec---CCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 15 RCPISLDVMKSPVSL---CTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.||+|..-+.|-.+. +|+|-||..||..|..- ..+||+|+..|..
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 455555555555443 36666666666666542 4567777766553
No 215
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.15 E-value=0.012 Score=60.80 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=40.0
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKE 62 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~ 62 (398)
+.|++|.+ ..+||++.|||.||++|+.+-+..- ...||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 9999999999999999999987542 336999987665443
No 216
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.12 E-value=0.2 Score=50.21 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=106.3
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH---HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH
Q 015939 221 NLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ---LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE 297 (398)
Q Consensus 221 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~---~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~ 297 (398)
-.+..++.+|+++ .+.++..|+.....|+.--.+|.. +...|. .|.+-| ...++++....++++..+...-.
T Consensus 604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l--ge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL--GEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc--CcccHHHHHHHHHHHHHHhhhhc
Confidence 4566777888888 889999999998888643332222 233443 366777 34788998888888887765333
Q ss_pred HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939 298 GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV 376 (398)
Q Consensus 298 ~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL 376 (398)
-+..----.|.+|.|.-+|++...+++.+.+..+..+|..+++. ..++.|. .--.|+..|.+. +.++|++|..-+
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~-nKeiRR~A~~tf 754 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW-NKEIRRNATETF 754 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh-hHHHHHhhhhhh
Confidence 22111011389999999999999999999999999999987531 2344442 122366677777 789999998888
Q ss_pred HHHhc
Q 015939 377 KVLGK 381 (398)
Q Consensus 377 ~~l~~ 381 (398)
..+++
T Consensus 755 G~Is~ 759 (975)
T COG5181 755 GCISR 759 (975)
T ss_pred hhHHh
Confidence 77776
No 217
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.08 E-value=1.1 Score=41.11 Aligned_cols=190 Identities=18% Similarity=0.142 Sum_probs=110.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCc-HHHHHHHhhhcc-CCcHHHHHHHHHHHHhhhcc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGF-VEAVFGVLNRKR-RSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~-v~~L~~lL~~~~-~~~~~~~~~al~~L~~l~~~ 163 (398)
....+.+.+.+...+ .+.-++.-+|-++.+ +..-..+...+++ ...+..++.... ......+--+++++.|+..+
T Consensus 64 ~~~~~~~~~~~Wp~~--~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 64 WLILLLKILLSWPPE--SRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHHCCS-CC--C-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCc--cchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence 344455556665544 788888888877765 4444445444233 455555554421 23344556789999999987
Q ss_pred cchHHHhhHhhhccCC-ChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCc-hhH-HHhhchhhHHHHHHHHh-ccccC
Q 015939 164 NGVKEKLNRLILNTYN-CLPLFLEILREG----NLDSKIGSIKILDSISLDN-ESK-RRVLETENLLSALFDYL-KLAED 235 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g-~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~-~~~-~~i~~~~g~i~~Lv~lL-~~~~~ 235 (398)
... +..++...+ .+...+..+... +..++..++.++.|++..- ..+ ..-.. ...+..++..+ ....+
T Consensus 141 ~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d 215 (268)
T PF08324_consen 141 PPG----RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESD 215 (268)
T ss_dssp CCC----HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTS
T ss_pred Ccc----HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCC
Confidence 665 565454444 343333333333 6788888888899997652 222 11111 23566666743 33358
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHH
Q 015939 236 QALNDAILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEK 284 (398)
Q Consensus 236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~ 284 (398)
+++.-.++.+|.+|...++....... .|+-..+-..-. ...++.+++-
T Consensus 216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~-~~~e~ri~~v 264 (268)
T PF08324_consen 216 EEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN-KSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH-HTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHh-cccchHHHHH
Confidence 99999999999999977777766665 344433333332 2334555443
No 218
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.026 Score=54.49 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=38.3
Q ss_pred CCCcccccCccccC-----------------CCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 10 VPNLFRCPISLDVM-----------------KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~-----------------~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
....--|+||.... ++=+++||.|.|-+.|+++|.+.-...||+||.+|.+
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44445699987532 2345679999999999999998545589999998753
No 219
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=93.96 E-value=0.26 Score=38.01 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+...+..|.+++..++.++..+.+. |++|.+++.-.- .+.++-+.|-|+.++.+|+.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHH
Confidence 4456788899999999999999999 889999988654 445667789999999999986654
No 220
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.90 E-value=0.81 Score=41.58 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHH-HhCCHHHHHHHhhccCcHHHHHHH
Q 015939 238 LNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI-VATCSEGRLALSEEASCAGRVVER 315 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~-La~~~~~~~~i~~~~g~v~~Lv~~ 315 (398)
....|+.+|--++- +++.+..+.+..++..++.+|. +...+.++..++.+|-. |..++.+.+.+. ..+|+..++.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~-~~~~~~i~~a~L~tLv~iLld~p~N~r~FE-~~~Gl~~v~~l 184 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLS-PSNPPAIQSACLDTLVCILLDSPENQRDFE-ELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhc-cCCCchHHHHHHHHHHHHHHcChHHHHHHH-HhCCHHHHHHH
Confidence 45667788888874 6677777889999999999995 34578888888888877 456889988887 46999999999
Q ss_pred Hhc--cChhHHHHHHHHHHHhhc
Q 015939 316 VMK--VGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 316 l~~--~~~~~~~~a~~~L~~l~~ 336 (398)
+++ .+.+++-..+..|+-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 986 577788888888877554
No 221
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.039 Score=51.78 Aligned_cols=50 Identities=18% Similarity=0.423 Sum_probs=35.7
Q ss_pred cccccCccccCCCce----ecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCC
Q 015939 13 LFRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKE 62 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~ 62 (398)
-..|.||-+.+-+-- +-.|||+|.-.|+.+||... +++||+|+-.+....
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH 59 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence 456999976654321 33499999999999999742 368999985555443
No 222
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.72 E-value=3 Score=39.68 Aligned_cols=185 Identities=8% Similarity=0.097 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHHhhhhhhh-----hhhhhhc-CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhh
Q 015939 101 ENSCVDYLVKVAKFATGCEAN-----RRFLASY-GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLI 174 (398)
Q Consensus 101 ~~~~~~al~~L~~l~~~~~~~-----r~~i~~~-~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~i 174 (398)
.|.+..+......+.+..... .+.+... |.++..|+.-.+. .+ ..-.+-..|........- -+.
T Consensus 90 fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~-~d----ial~~g~mlRec~k~e~l----~~~- 159 (335)
T PF08569_consen 90 FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN-PD----IALNCGDMLRECIKHESL----AKI- 159 (335)
T ss_dssp HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS-TT----THHHHHHHHHHHTTSHHH----HHH-
T ss_pred CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC-cc----ccchHHHHHHHHHhhHHH----HHH-
Confidence 346777776666666554333 3355554 5566666655554 22 224555666666654332 244
Q ss_pred hccCCChHHHHHHHhcCChhhHHHHHHHHHHh-hcCchhHH-Hhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSI-SLDNESKR-RVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-~~~~~~~~-~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
+-....+-.+.+.+..++.++...|..++..| ..+..... .+.. ...++.....+|.++ +--.++.++..|..|-.
T Consensus 160 iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 160 ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLL 238 (335)
T ss_dssp HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHH
Confidence 44577888999999999999999999999965 55554333 3322 235677788899888 88899999999999998
Q ss_pred CcchHHHHH----HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH
Q 015939 252 YRSVKAQLV----ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG 298 (398)
Q Consensus 252 ~~~~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~ 298 (398)
+..|...|. +..-+..++.+|+ +.+..++-.|..+......+|..
T Consensus 239 dr~n~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 239 DRSNFNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp SGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-SS-
T ss_pred chhHHHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhCCCC
Confidence 888766553 4556788888895 47888999999999998775543
No 223
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.68 E-value=0.46 Score=41.81 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
...|+..|+-++++ ++.+..+.++ .+.-.|-.+|..+ .....-.+-.++.++..+..+++.. ..+. +....++
T Consensus 117 vcnaL~lLQclaSh-Petk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~--vi~f-LltTeiv 191 (315)
T COG5209 117 VCNALNLLQCLASH-PETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQY--VIKF-LLTTEIV 191 (315)
T ss_pred HHHHHHHHHHHhcC-cchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHH--HHHH-HHhhhHH
Confidence 45677777777766 8889998888 7666666777542 1111223457888898888876531 2233 5578999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhch-------hhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCCc
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLET-------ENLLSALFDY-LKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-------~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
|.+++++..|+.-.+.-|+.++..+..++..-..+..+ ..++..++.- .+.+ +..+.+.++++-..||..+
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCCH
Confidence 99999999999888999999999888877554444322 1233333332 2334 6778899999999998888
Q ss_pred chHHHHH
Q 015939 254 SVKAQLV 260 (398)
Q Consensus 254 ~~~~~~v 260 (398)
..|..+-
T Consensus 271 ~aR~lL~ 277 (315)
T COG5209 271 HARALLS 277 (315)
T ss_pred hHHHHHh
Confidence 7776553
No 224
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=0.9 Score=46.83 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=74.7
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ 258 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 258 (398)
+++..++.=-.+.++.+|..|.+.+..+-.+ .+. .-.+.+|.+.+++. ++-+++.++-...++ +..+...
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i~--ey~~~Pl~~~l~d~-~~yvRktaa~~vakl--~~~~~~~ 155 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KIT--EYLCDPLLKCLKDD-DPYVRKTAAVCVAKL--FDIDPDL 155 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HHH--HHHHHHHHHhccCC-ChhHHHHHHHHHHHh--hcCChhh
Confidence 3444444444455778887776666655543 121 34678999999998 787888777666664 3344455
Q ss_pred HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH
Q 015939 259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS 296 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~ 296 (398)
..+.|.++.|-.++. ++++.|+.+|+.+|..+....
T Consensus 156 ~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhC
Confidence 568999999999995 578999999999999997633
No 225
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.48 E-value=5 Score=39.01 Aligned_cols=127 Identities=15% Similarity=0.239 Sum_probs=88.5
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cC---ChhhHHHHHHHHHH
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EG---NLDSKIGSIKILDS 205 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~ 205 (398)
.....|..+++....=...+...|+.++..+..+++.. -.++.+.|.++.+++.+. .+ +.++...--.+|..
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~----~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A 181 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS----FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA 181 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch----hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence 44555556665521113457788999999999888873 455889999999999998 55 56666667788999
Q ss_pred hhcCchhHHHhhchhhHHHHHHHHhccccCH------HHHHHHHHHHHHhcCCcc-hHHHHHH
Q 015939 206 ISLDNESKRRVLETENLLSALFDYLKLAEDQ------ALNDAILSILITLSVYRS-VKAQLVE 261 (398)
Q Consensus 206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~------~~~~~a~~aL~~Ls~~~~-~~~~~v~ 261 (398)
|+.+.+..+.+.+ .+.++.+++++.++... +.....-..+-.|..+.. -|..+++
T Consensus 182 icLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 182 ICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999988 79999999998876222 222333344556666544 4444443
No 226
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.48 E-value=5.7 Score=37.82 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=111.1
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhh-hhh-hhhhhhhhcCCcHHHHHHHhhhcc---CCc-------HHHHHHHH
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFAT-GCE-ANRRFLASYGGFVEAVFGVLNRKR---RSE-------IAVLESAV 154 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~-~~~-~~r~~i~~~~g~v~~L~~lL~~~~---~~~-------~~~~~~al 154 (398)
...+.+.|++.... ....++.-|..++. .+. ..++.+..-+-..+.+..++.... ... ..++...+
T Consensus 58 ~k~lyr~L~~~~~~--~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSKPS--LTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCcHH--HHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 44455556655533 55678888888887 553 445556555334567777774321 110 14557778
Q ss_pred HHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH-HhhcCc----hhHHHhhchhhHHHHHHHH
Q 015939 155 RVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD-SISLDN----ESKRRVLETENLLSALFDY 229 (398)
Q Consensus 155 ~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~L~~~~----~~~~~i~~~~g~i~~Lv~l 229 (398)
+.+..+....+. ..++.++...+.+..+.+-|..++.++......+|. .+..++ ..|..+.. ...+..|+.+
T Consensus 136 ~F~Lsfl~~~~~--~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~L 212 (330)
T PF11707_consen 136 RFWLSFLSSGDP--ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASL 212 (330)
T ss_pred HHHHHHHccCCH--HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHH
Confidence 766555544332 357887888889999999999999999999888888 455553 56666777 7789999998
Q ss_pred hccccCH----HHHHHHHHHHHHhcCCcc
Q 015939 230 LKLAEDQ----ALNDAILSILITLSVYRS 254 (398)
Q Consensus 230 L~~~~~~----~~~~~a~~aL~~Ls~~~~ 254 (398)
.... ++ .+...+-..|..+|.++.
T Consensus 213 y~~~-~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 213 YSRD-GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred hccc-CCcccchHHHHHHHHHHHHhcCCC
Confidence 7766 55 788888889999986554
No 227
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.44 E-value=0.39 Score=36.83 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
...++.++..+...+..+|..|+.+|.+++..-..... .....+++.|.+++.+. ++.++..| ..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~~D~-d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLSADP-DENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC-chhHHHHH-HHHHHH
Confidence 34689999999999999999999999999977332222 22267899999999988 77665554 555544
No 228
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.40 E-value=0.26 Score=43.87 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhhcCc---hhHHHhhchhhHHHHHHHHhccc--------------cCHHHHHHHHHHHHHhcCCcchH
Q 015939 194 DSKIGSIKILDSISLDN---ESKRRVLETENLLSALFDYLKLA--------------EDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~---~~~~~i~~~~g~i~~Lv~lL~~~--------------~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
..|++|..+|.|++..- ++-+.|. .-+++.|+...-.+ ....-++-|+.+|..|+..+.|.
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV 158 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV 158 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence 56788888888887652 2223332 12344444433211 11346899999999999988876
Q ss_pred HHHHHcC-------ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhccCcHHHHHHHHhccCh
Q 015939 257 AQLVELG-------MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEASCAGRVVERVMKVGK 321 (398)
Q Consensus 257 ~~~v~~g-------~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~g~v~~Lv~~l~~~~~ 321 (398)
.-+..-+ .+..|+++|. ...++-.+|-|+.+|.+|+..++.. ..+....++|..|+.++.....
T Consensus 159 DliLaTpp~sRlE~l~~~L~r~l~-~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 159 DLILATPPFSRLERLFHTLVRLLG-MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred ceeeeCCCHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 6655433 4556777775 3568889999999999999966544 3555567999999999986443
No 229
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.085 Score=49.48 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=45.9
Q ss_pred ccccCccccCC------CceecCCCcccchhHHHHHHhcCCCCCCcccccC--CCC---CCcccHHHHHHHHHH
Q 015939 14 FRCPISLDVMK------SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL--STK---EFVPNLTLHRLIAHW 76 (398)
Q Consensus 14 ~~Cpi~~~~~~------dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l--~~~---~l~~n~~l~~~i~~~ 76 (398)
+.|-||.+.++ -|-++.||||+|..|+.+....+.-.||.||++. ... .+..|.++-..+...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 35777777665 4888999999999999988876666799999984 222 345566666666553
No 230
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=8.7 Score=40.07 Aligned_cols=246 Identities=16% Similarity=0.103 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH--Hhh--Hhhhcc-
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE--KLN--RLILNT- 177 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~--~~~--~~il~~- 177 (398)
...+|..++..+... +-+.+. -++..|--++++ +..-++..|.++|..++...+... .|+ ...+.+
T Consensus 261 V~~EaArai~~l~~~---~~r~l~---pavs~Lq~flss---p~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~ 331 (865)
T KOG1078|consen 261 VIYEAARAIVSLPNT---NSRELA---PAVSVLQLFLSS---PKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDS 331 (865)
T ss_pred HHHHHHHHHhhcccc---CHhhcc---hHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhccc
Confidence 445566666655433 222222 234455555555 234456899999988876443210 011 110111
Q ss_pred --CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc---
Q 015939 178 --YNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS--- 250 (398)
Q Consensus 178 --~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls--- 250 (398)
.=.......+|+.|+.+...+-..-+.+...+ +++|..+++ ++..|... -|.-..-.+..|.++-
T Consensus 332 NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd---ai~sLc~~-----fp~k~~~~m~FL~~~Lr~e 403 (865)
T KOG1078|consen 332 NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD---AIRSLCLK-----FPRKHTVMMNFLSNMLREE 403 (865)
T ss_pred ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH---HHHHHHhh-----ccHHHHHHHHHHHHHHHhc
Confidence 12344555677777666665555555555444 444444322 23332222 1112222222333322
Q ss_pred CCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH---HHHHHHh---hc--------cCcHHHHHHHH
Q 015939 251 VYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS---EGRLALS---EE--------ASCAGRVVERV 316 (398)
Q Consensus 251 ~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~---~~~~~i~---~~--------~g~v~~Lv~~l 316 (398)
..-+.+..++ +.++.++.. .+..++.++.-|+..-.+- ..-..|. .. ...+..+.+.+
T Consensus 404 Gg~e~K~aiv-----d~Ii~iie~---~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv 475 (865)
T KOG1078|consen 404 GGFEFKRAIV-----DAIIDIIEE---NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV 475 (865)
T ss_pred cCchHHHHHH-----HHHHHHHHh---CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh
Confidence 2223343332 234444421 2333343433333321111 1101110 01 11233344434
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
--.+..++..|+.+|.++.... +.. ...+...|-+.+... ++++|+.|...|+.+.+
T Consensus 476 iLEn~ivRaaAv~alaKfg~~~--~~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 476 ILENAIVRAAAVSALAKFGAQD--VVL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhHHHHHHHHHHHhcCC--CCc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence 3467888889999998888432 222 223344455555444 89999999999999985
No 231
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.057 Score=49.98 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=39.5
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
++=+||||..---+-|..||||.-|..||.+++-. .+.|-.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 56789999998889999999999999999999853 566888875543
No 232
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.11 E-value=7.9 Score=37.65 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=89.2
Q ss_pred CCChHHHHHHHhcC---ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc-cc--cCHHHHHHHHHHHHHhcC
Q 015939 178 YNCLPLFLEILREG---NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK-LA--EDQALNDAILSILITLSV 251 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~~~a~~aL~~Ls~ 251 (398)
...+..|..++++. ...+-..|+.++..+..++-..-.+....|.++.+++.+. .+ .+.++....-.+|..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 56677777777765 5677788999999888775444444444899999999888 43 467888888899999999
Q ss_pred CcchHHHHHHcCChHHHHHHhcccC-----cchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939 252 YRSVKAQLVELGMVQILTRILSDSR-----TQILTVEKSIKMLSIVAT-CSEGRLALS 303 (398)
Q Consensus 252 ~~~~~~~~v~~g~v~~Lv~lL~~~~-----~~~~~~~~al~~L~~La~-~~~~~~~i~ 303 (398)
+.+..+.+.+.+.++.+++++.++. ...+....--..+..|.. +|.-|..++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999999999995311 011222223334444555 555555555
No 233
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.08 E-value=5.6 Score=37.23 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHH--H-------h
Q 015939 146 EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKR--R-------V 216 (398)
Q Consensus 146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~-------i 216 (398)
+..+++.|+++|...+.-+... ....++.+...++.++.+++..|+.+|..+........ . .
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~---------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKEL---------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 3467799999999888755431 12347888888888899999999999997765421111 1 1
Q ss_pred hchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccC--cchhhHHHHHHHHHHHhC
Q 015939 217 LETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSR--TQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 217 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~ 294 (398)
.. ...++.+.+.|.+. +++++..++..+..|--.+.... ....+..|+-+--++. ++..++.--...+-..+.
T Consensus 111 ~~-~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 111 DS-KSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred hH-hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 12 45788888899888 88999999999999854432211 1223444444442222 234555555555666666
Q ss_pred -CHHHHHHHhhccCcHHHHHHHHhccCh----hH---HHHHHHHHHHhhc
Q 015939 295 -CSEGRLALSEEASCAGRVVERVMKVGK----TA---REDAVVVIWSMCC 336 (398)
Q Consensus 295 -~~~~~~~i~~~~g~v~~Lv~~l~~~~~----~~---~~~a~~~L~~l~~ 336 (398)
+++++..+. .+.++.+-.+.....+ .. -...+..+..++.
T Consensus 186 s~~~~Q~~l~--~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 186 SSPENQERLA--EAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred CCHHHHHHHH--HHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 445555555 3788888887765332 11 2355555656654
No 234
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.91 E-value=0.18 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
.+|.++++++++ +++++.+|+.+|.+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478899999999 99999999999998864
No 235
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.84 E-value=2.2 Score=36.23 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=76.1
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC----Ccc
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV----YRS 254 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~----~~~ 254 (398)
..+..+..+|++.+.+.|..++.++..+...............-+..|+.+|+..+++...+.++.+|..|-. .++
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3466788899999999999999999988876443333333344788999999998677788888888887743 334
Q ss_pred hHHHHHH---cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 255 VKAQLVE---LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 255 ~~~~~v~---~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
..+.+.. .+.++.++.+++ +....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~----~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQ----DSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHh----ccccHHHHHHHHHHHHH
Confidence 4444432 234445555553 25667777777777644
No 236
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.042 Score=54.76 Aligned_cols=61 Identities=31% Similarity=0.362 Sum_probs=40.7
Q ss_pred CCCcccccCccccC----CCceecCCCcccchhHHHHHHhcCCCCCCccccc-----CCCCCCcccHHHHHHHH
Q 015939 10 VPNLFRCPISLDVM----KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQI-----LSTKEFVPNLTLHRLIA 74 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~----~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~-----l~~~~l~~n~~l~~~i~ 74 (398)
..+.++|+||...| ..||.+-||||.|+.|.+.... .+|| |+.. .+.+....|+++-+.+.
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcchhHHHHHhhc
Confidence 33456899997666 4799999999999999998864 4677 3221 22233445665544443
No 237
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.74 E-value=0.097 Score=37.58 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=34.1
Q ss_pred cccCccccCC----Cceec-CCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 15 RCPISLDVMK----SPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 15 ~Cpi~~~~~~----dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
+||-|.--|. -||+. .|.|.|--.||.+|++. ...||.+++++.-
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 5777766442 25555 49999999999999986 6679999987653
No 238
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.73 E-value=0.2 Score=29.38 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
+|.+++++++.++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999998875
No 239
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.57 E-value=13 Score=37.59 Aligned_cols=263 Identities=13% Similarity=0.050 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHh-hhcccc--hHHHhhHhhhccCC
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNL-IVNENG--VKEKLNRLILNTYN 179 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~-l~~~~~--~~~~~~~~il~~~g 179 (398)
.+.+++..+.+.|.. ......+.....++-.++.--.+ ...+..++-.|+.+|.+ +-.-.. ..|.+|.+
T Consensus 150 ~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k-~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy------ 221 (858)
T COG5215 150 GKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALK-NETTSAVRLAALKALMDSLMFVQGNFCYEEERNY------ 221 (858)
T ss_pred hHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch------
Confidence 467788888887743 22234444441233333322222 23345566788888876 222111 11223333
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-c---
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-S--- 254 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~--- 254 (398)
.+...++.-+..+.+++..|-.+|..+..- -..-....+ .-....+.+.+++. +.++...+...-..+|... +
T Consensus 222 ~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~-nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 222 FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQ-NDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHhhhHH
Confidence 355556666777889999998898877654 333334443 33444455677887 6667666666554444211 0
Q ss_pred -------------hHHHHHHcCChHHHHHHhcccCc-----chhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939 255 -------------VKAQLVELGMVQILTRILSDSRT-----QILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 255 -------------~~~~~v~~g~v~~Lv~lL~~~~~-----~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
+-....-++++|.|+.+|....+ +-.+...|..+|...+.. ....|++ + ++.-+=.-+
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~-p-Vl~FvEqni 375 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMR-P-VLGFVEQNI 375 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHH-H-HHHHHHHhc
Confidence 00111124578999999953222 224555555555544431 1123331 1 111111223
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
...+-.-++.|+.++..+... ++..+...++.. ++|.+...+... .-.+|..+++++..++++
T Consensus 376 ~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~q-alp~i~n~m~D~-~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQ-ALPGIENEMSDS-CLWVKSTTAWCFGAIADH 438 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHh-hhHHHHHhcccc-eeehhhHHHHHHHHHHHH
Confidence 446777789999999998865 445555555544 677788887744 578999999999999983
No 240
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.56 E-value=0.99 Score=39.77 Aligned_cols=177 Identities=14% Similarity=0.165 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHH
Q 015939 196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRS--VKAQLVELGMVQILT 269 (398)
Q Consensus 196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv 269 (398)
..+|..+|..++++++.|..+.+ ..+--.|..+|... .-.-++-.++.++..|..+++ ....+..-.+||.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 45788889999999999998887 44333344444322 223467789999999998764 444456888999999
Q ss_pred HHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-------cCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCCh
Q 015939 270 RILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-------ASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDA 341 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-------~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~ 341 (398)
+++. .+++-.+-.|.-++..+-.++.|-+.+... ...+..++.-+. .++...-++++++-..++.. +
T Consensus 196 rIme--~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~---p 270 (315)
T COG5209 196 RIME--LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK---P 270 (315)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC---H
Confidence 9994 356666777888888888888777665422 122333333332 37788889999999998864 4
Q ss_pred hHHHHHH---hcCCHHHHHH-HHhhcCcHHHHHHHHHHHHHHh
Q 015939 342 RVKEAVV---NSNGLTKLLL-VMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 342 ~~~~~~~---~~g~~~~Ll~-~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
+.+..+- -.|....-.. ++.++ ...|++-+.++-.++
T Consensus 271 ~aR~lL~~~lP~~Lrd~tfs~vl~dD--~~sk~ClAqll~~ln 311 (315)
T COG5209 271 HARALLSSKLPDGLRDDTFSLVLADD--GGSKECLAQLLTFLN 311 (315)
T ss_pred hHHHHHhccCCccccccHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 5554432 2444333322 33333 234455455544443
No 241
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=1.1 Score=48.45 Aligned_cols=140 Identities=12% Similarity=0.126 Sum_probs=105.8
Q ss_pred HHHHHHHHhccc---cCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CH
Q 015939 222 LLSALFDYLKLA---EDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CS 296 (398)
Q Consensus 222 ~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~ 296 (398)
+.|.++.+.+++ .+|+.+.+|.-+|+.+.. ..+.+.. ..|.|+.+|. .++++.++-++...|.-|+- .|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftime-ksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIME-KSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHh-cCCCceeeecchheccchhhhcc
Confidence 567777787665 579999999999999853 4444432 6799999996 36789999999999988876 33
Q ss_pred HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939 297 EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV 376 (398)
Q Consensus 297 ~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL 376 (398)
.-.+.. -+.|...+.+.++.+++.|+.+|..|-.. .++---|.+..+...|..+ +++++..|....
T Consensus 994 nlie~~------T~~Ly~rL~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~-~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 994 NLIEPW------TEHLYRRLRDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDP-NAEISDLAKSFF 1059 (1251)
T ss_pred cccchh------hHHHHHHhcCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCC-cHHHHHHHHHHH
Confidence 333333 34577778889999999999999998863 1334468888888888766 899999999666
Q ss_pred HHHhc
Q 015939 377 KVLGK 381 (398)
Q Consensus 377 ~~l~~ 381 (398)
+.|+.
T Consensus 1060 ~Els~ 1064 (1251)
T KOG0414|consen 1060 KELSS 1064 (1251)
T ss_pred HHhhh
Confidence 66665
No 242
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=92.13 E-value=11 Score=38.69 Aligned_cols=173 Identities=11% Similarity=0.169 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHH
Q 015939 150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDY 229 (398)
Q Consensus 150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l 229 (398)
+.-|+.+|+.+..+.....-.... ......+..++..+. +++.-+.-++++|.|+..++..+..+.....-+...+--
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~-~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~ 638 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDR-EEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIE 638 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhh-hhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhh
Confidence 456677776666554432110010 012234555555555 556777889999999999987777766532222222222
Q ss_pred hccccCHHHHHHHHHHHHHhcC--CcchHHHHHHcCChHHHHHHhc---ccCcchhhHHHHHHHHHHHhCCHHHHHHHhh
Q 015939 230 LKLAEDQALNDAILSILITLSV--YRSVKAQLVELGMVQILTRILS---DSRTQILTVEKSIKMLSIVATCSEGRLALSE 304 (398)
Q Consensus 230 L~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~~v~~g~v~~Lv~lL~---~~~~~~~~~~~al~~L~~La~~~~~~~~i~~ 304 (398)
.+...+..++.+.+....|++. ..++- +.|+.+.+..+++ ++..|-+..-..+.+|.+|+..+....++..
T Consensus 639 ~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~ 714 (745)
T KOG0301|consen 639 ASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAK 714 (745)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 2333345566666666666643 22221 1455555555543 2233445667889999999998888888774
Q ss_pred ccCcHHHHHHHHhc-cChhHHHHHHH
Q 015939 305 EASCAGRVVERVMK-VGKTAREDAVV 329 (398)
Q Consensus 305 ~~g~v~~Lv~~l~~-~~~~~~~~a~~ 329 (398)
. -.|..+++.++. .+....+..++
T Consensus 715 ~-~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 715 N-RSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred h-cCHHHHHHHHHHhccCchhhHHHH
Confidence 3 567888887775 34333333333
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.13 E-value=10 Score=41.51 Aligned_cols=255 Identities=11% Similarity=0.059 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 103 SCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 103 ~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
.+.+|+.-|+.++.. +++++ .+-++|-++.++.+ +..+++-.|+.+|..+...-.+-+.+-.. +--.-.+
T Consensus 439 tK~~ALeLl~~lS~~i~de~~-----LDRVlPY~v~l~~D---s~a~Vra~Al~Tlt~~L~~Vr~~~~~dan-iF~eYlf 509 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVK-----LDRVLPYFVHLLMD---SEADVRATALETLTELLALVRDIPPSDAN-IFPEYLF 509 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHH-----HhhhHHHHHHHhcC---chHHHHHHHHHHHHHHHhhccCCCcccch-hhHhhhh
Confidence 577888888888754 22222 12568888999887 34566788888887766543322111122 2233467
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHhhcC-------------------chh--HH------HhhchhhHHHH-HHHHhcc
Q 015939 182 PLFLEILREG-NLDSKIGSIKILDSISLD-------------------NES--KR------RVLETENLLSA-LFDYLKL 232 (398)
Q Consensus 182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-------------------~~~--~~------~i~~~~g~i~~-Lv~lL~~ 232 (398)
|.|-.++.+. ...+|..=|..|..|+.. +++ .. ...+....+.. .+.+|.+
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd 589 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD 589 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence 8888888763 444444333333333321 111 00 00000112223 3345555
Q ss_pred ccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH
Q 015939 233 AEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGR 311 (398)
Q Consensus 233 ~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~ 311 (398)
. ++-++++-+..|.-||..- ..+ ..-=.++.|+..|. +.|..++..-...+.-++..- +.+.+ +++.+|.
T Consensus 590 ~-~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~V-G~rs~--seyllPL 660 (1431)
T KOG1240|consen 590 S-PPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFV-GWRSV--SEYLLPL 660 (1431)
T ss_pred C-chHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhc--CccHHHHHHHHhhccceEEEE-eeeeH--HHHHHHH
Confidence 5 6677888788877776421 000 01114567777773 345555544443333333211 11111 2356788
Q ss_pred HHHHHhccChhHHHHHHHHHHHhhccCC-ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 312 VVERVMKVGKTAREDAVVVIWSMCCVYK-DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 312 Lv~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|..-|.++.+-+-..|+.+|..|+..+- ....+..++ ..+.|-|+ ..+..+|..+..++-...+
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~-~~v~PlL~-----hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDIL-QDVLPLLC-----HPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHH-Hhhhhhee-----CchHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888887531 011122222 22333332 4477888888777665554
No 244
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.11 E-value=4.8 Score=43.41 Aligned_cols=259 Identities=14% Similarity=0.101 Sum_probs=149.9
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHH
Q 015939 109 VKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL 188 (398)
Q Consensus 109 ~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL 188 (398)
..|..+.+.+.+|...+.++ .++..++.++-+ +. -+...++++..|...++. -++..-+-.+++.|
T Consensus 664 DcLisllKnnteNqklFrea-nGvklilpflin--de---hRSslLrivscLitvdpk--------qvhhqelmalVdtL 729 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREA-NGVKLILPFLIN--DE---HRSSLLRIVSCLITVDPK--------QVHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHhccchhhHHHHhh-cCceEEEEeeec--hH---HHHHHHHHHHHHhccCcc--------cccHHHHHHHHHHH
Confidence 45667888889999999998 777777766643 11 123445555555544442 11334566788888
Q ss_pred hcCC------------hhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccc---------cCHHHHHHHHHHH
Q 015939 189 REGN------------LDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLA---------EDQALNDAILSIL 246 (398)
Q Consensus 189 ~~~~------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~---------~~~~~~~~a~~aL 246 (398)
++|- .+.......+++.+-. +...+..+++ .+++..|..+|..- .|.-.--.-...|
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 8752 1233344455665543 3456666777 77777777776521 1111111222223
Q ss_pred HHh-----cCCcchHHHHHHcCChHHHHHHhcccC-----cch----hhHH---------------HHHHHHHHHhC---
Q 015939 247 ITL-----SVYRSVKAQLVELGMVQILTRILSDSR-----TQI----LTVE---------------KSIKMLSIVAT--- 294 (398)
Q Consensus 247 ~~L-----s~~~~~~~~~v~~g~v~~Lv~lL~~~~-----~~~----~~~~---------------~al~~L~~La~--- 294 (398)
..+ +.+..|+.++-..=.-+.+.++|+... .+. .+.+ .|+..+-.+-.
T Consensus 809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence 322 345556655432222233333332100 000 0111 22222222211
Q ss_pred --------CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh--hcC
Q 015939 295 --------CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ--SEN 364 (398)
Q Consensus 295 --------~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~--~~~ 364 (398)
....++.|. .+|++..++..+....++.|-.-+..|..++..+ +...+..-..|.++.|+..+- ..+
T Consensus 889 avntPsGqfnpdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRas--pfnaelltS~gcvellleIiypflsg 965 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS--PFNAELLTSAGCVELLLEIIYPFLSG 965 (2799)
T ss_pred eeccCCCCcCchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC--CCchhhhhcccHHHHHHHHhhhhhcC
Confidence 112355667 5799999999999999999999999999999875 567777777899998887772 233
Q ss_pred cHHHHHHHHHHHHHHhcCCCC
Q 015939 365 EGIVRKMCGDLVKVLGKASGL 385 (398)
Q Consensus 365 ~~~~k~~A~~lL~~l~~~~~~ 385 (398)
+...--.|.+++.+|.-|.-.
T Consensus 966 sspfLshalkIvemLgayrls 986 (2799)
T KOG1788|consen 966 SSPFLSHALKIVEMLGAYRLS 986 (2799)
T ss_pred CchHhhccHHHHHHHhhccCC
Confidence 566777888888888776433
No 245
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=8.5 Score=40.62 Aligned_cols=213 Identities=8% Similarity=0.051 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH
Q 015939 149 VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD 228 (398)
Q Consensus 149 ~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ 228 (398)
+...++..|..+...-. +...+...+++....+.|.+.+..+--+|...+..|+.. -. ...+|-|..
T Consensus 743 ik~~gL~~l~~l~e~r~-----~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~-e~il~dL~e 809 (982)
T KOG4653|consen 743 IKGYGLQMLRHLIEKRK-----KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP-EDILPDLSE 809 (982)
T ss_pred chHHHHHHHHHHHHhcc-----hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc-hhhHHHHHH
Confidence 33555555655554221 122244567777777888777777777777766666554 11 345666666
Q ss_pred -Hhccc--cCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH--HHHHH
Q 015939 229 -YLKLA--EDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE--GRLAL 302 (398)
Q Consensus 229 -lL~~~--~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~--~~~~i 302 (398)
..+.. ..++.+--.-.+++++... .+-...-.+ -.+...+..++ +++...+..+++.|++|+.-.. +-..+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVR--EPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 33322 1123343444666666432 222222111 24566666665 3577778999999999987332 12233
Q ss_pred hhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHH--HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 303 SEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAV--VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 303 ~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
. .++..++.+.+. ++.-+++.|+-++..+-...+ ++..+.. ..-.....+...+..+.++.+|-.|...+..+
T Consensus 887 ~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 887 H---EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred H---HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 2 355666666654 788899999999988776543 3333322 23455666777777777788888887766655
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
-.
T Consensus 963 ~a 964 (982)
T KOG4653|consen 963 QA 964 (982)
T ss_pred HH
Confidence 44
No 246
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.00 E-value=3.5 Score=45.92 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=131.3
Q ss_pred CCcccchhHHHHHHhcCCCCCCcccccCC-CCCCcccHHH--HHHHHHHHhhCCCCHHHHHHHHHHHHcCC-----CCch
Q 015939 31 TGVTYDRSSIQHWLESGHDTCPATMQILS-TKEFVPNLTL--HRLIAHWSHQLTVPEQEVRVWIEKIKSEN-----ESEN 102 (398)
Q Consensus 31 ~g~~~~r~~i~~~~~~~~~~CP~~~~~l~-~~~l~~n~~l--~~~i~~~~~~~p~p~~~i~~l~~~l~~~~-----~~~~ 102 (398)
++..+|+.+|.+|+..-. -.+...+. ..+.-.|..- ..-+..|.+.++....+...++..++... ....
T Consensus 712 ~~v~~~~fyi~~w~~d~~---le~~~~~~~~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~ 788 (1692)
T KOG1020|consen 712 SEVYACHFYIAQWYRDTR---LETILIMEENKDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLN 788 (1692)
T ss_pred hhHHHhhHHHHhHHHHHH---HHHHHHHHhccCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCC
Confidence 566788999999953200 00000000 0122222211 12223444455544445666666664331 0000
Q ss_pred hH---HHHHHH-HHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939 103 SC---VDYLVK-VAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY 178 (398)
Q Consensus 103 ~~---~~al~~-L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~ 178 (398)
.. ....+. ...++ .+|.+....++.+..++.+|.. + .+.++..|+++|..+..-++. |+...
T Consensus 789 s~~~d~~~a~li~~~la----~~r~f~~sfD~yLk~Il~~l~e-~--~ialRtkAlKclS~ive~Dp~-------vL~~~ 854 (1692)
T KOG1020|consen 789 SRFADDDDAKLIVFYLA----HARSFSQSFDPYLKLILSVLGE-N--AIALRTKALKCLSMIVEADPS-------VLSRP 854 (1692)
T ss_pred CccccchhHHHHHHHHH----hhhHHHHhhHHHHHHHHHHhcC-c--hHHHHHHHHHHHHHHHhcChH-------hhcCH
Confidence 11 122222 22333 2455666555677888888886 3 355779999999999876553 24455
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHh-hcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSI-SLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
.+-..+-.-+...+..+|+.|+.+++.. ...++.-.+. ...+..-..+. +..+++.+++.|..+|...++-.
T Consensus 855 dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy------Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 855 DVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY------YDQIIERILDT-GVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH------HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChh
Confidence 5566666666677889999999999944 4445444433 22334333444 57899999999999996554433
Q ss_pred HHHHcCChHHHHHHhcccCcchh-hHHHHHHHHHHH
Q 015939 258 QLVELGMVQILTRILSDSRTQIL-TVEKSIKMLSIV 292 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~~L~~L 292 (398)
.+ +...+++|+.-+++++ +++.+..++..+
T Consensus 928 ~i-----~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 928 KI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hH-----HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33 3445566653333444 777777777776
No 247
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.062 Score=38.21 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=34.0
Q ss_pred cccccCccccCCC-ceecC-CCcccchhHHHHHHhc--CCCCCCcccccCC
Q 015939 13 LFRCPISLDVMKS-PVSLC-TGVTYDRSSIQHWLES--GHDTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~d-Pv~~~-~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~ 59 (398)
+-.||-|+-.=.| |.++- |.|.|-+.||.+|+.. ....||-||+.++
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3456666554444 66664 9999999999999863 2357999998764
No 248
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.89 E-value=7.7 Score=40.82 Aligned_cols=144 Identities=11% Similarity=0.113 Sum_probs=90.1
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhh-------chh-----hHHHHHHHHhccccCHHHHHHHHHH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVL-------ETE-----NLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-------~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
.+++.++..+..|+. .......++.+++.. .+.|..+- +.. =++..+.+=|+++ ++..+..|+++
T Consensus 38 dAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~-N~~iR~~AlR~ 115 (757)
T COG5096 38 DAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDP-NEEIRGFALRT 115 (757)
T ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCC-CHHHHHHHHHH
Confidence 567777777777754 555566667766543 34443321 100 1222333334455 77788888887
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
|..+=... +.. .+++++.+++ .++++.|++.|.-++..+=.-+ ..+....|.+..+..++.+.+|.+..
T Consensus 116 ls~l~~~e-----l~~-~~~~~ik~~l--~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~ 184 (757)
T COG5096 116 LSLLRVKE-----LLG-NIIDPIKKLL--TDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIA 184 (757)
T ss_pred HHhcChHH-----HHH-HHHHHHHHHc--cCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHH
Confidence 77653221 111 2677888888 4477888888888877775422 23333567888888888888888888
Q ss_pred HHHHHHHHhh
Q 015939 326 DAVVVIWSMC 335 (398)
Q Consensus 326 ~a~~~L~~l~ 335 (398)
+|+..|..+.
T Consensus 185 nAl~sl~~i~ 194 (757)
T COG5096 185 NALASLAEID 194 (757)
T ss_pred HHHHHHHHhc
Confidence 8888887766
No 249
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=11 Score=42.19 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=141.6
Q ss_pred CCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-
Q 015939 99 ESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN- 176 (398)
Q Consensus 99 ~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~- 176 (398)
..|..+.-|+.-+..+++.. ++.+..+.+ .||.|.++ ..|++..+ ..|..-+.+....+.. .. +.
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~k---LIPrLyRY---~yDP~~~V-q~aM~sIW~~Li~D~k-----~~-vd~ 1035 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKK---LIPRLYRY---QYDPDKKV-QDAMTSIWNALITDSK-----KV-VDE 1035 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHH---hhHHHhhh---ccCCcHHH-HHHHHHHHHHhccChH-----HH-HHH
Confidence 33556666666666665442 233334432 25555444 24566554 4566666665544431 11 11
Q ss_pred -cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH---HHHHHHhcC-
Q 015939 177 -TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI---LSILITLSV- 251 (398)
Q Consensus 177 -~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a---~~aL~~Ls~- 251 (398)
-..++.-|+.-|.+....+|+.+|.+|..|....+.-...-.-...+..+++...+= ...++++| +.+|..|+.
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 235677777777777889999999999999988555444433356777888887664 34455554 445555532
Q ss_pred --Cc--chHHHHHHcCChHHHHH--HhcccCcchhhHHHHHHHHHHHhCCHHH-HHHHhhccCcHHHHHHHHhccCh---
Q 015939 252 --YR--SVKAQLVELGMVQILTR--ILSDSRTQILTVEKSIKMLSIVATCSEG-RLALSEEASCAGRVVERVMKVGK--- 321 (398)
Q Consensus 252 --~~--~~~~~~v~~g~v~~Lv~--lL~~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~~g~v~~Lv~~l~~~~~--- 321 (398)
+. ..+.+-+-..++|.|++ ++ +.-++++..+++++.-|+.+... ..... +-.||.|.+....-.+
T Consensus 1115 ~~d~~~~~~~~~~l~~iLPfLl~~gim---s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDEGIM---SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred hcccCCcccHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHH
Confidence 11 11222222235566653 33 34678999999999999984432 11111 2355555555443222
Q ss_pred --------hHHHHHHHHHHH-hhccCCChhHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 322 --------TAREDAVVVIWS-MCCVYKDARVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 322 --------~~~~~a~~~L~~-l~~~~~~~~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
....+|+..+.. .++.++--+.....++ ...+|.+..+++++-+-..|--++..+-.|.
T Consensus 1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence 222334443322 3333321122222221 4467888888877655566666655444443
No 250
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.55 E-value=12 Score=35.03 Aligned_cols=221 Identities=11% Similarity=0.064 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHH
Q 015939 106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFL 185 (398)
Q Consensus 106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv 185 (398)
-|+..+..+.-. ++.|..+-...-.-..++.+++. .-...+++-+.+-++..+..+..-.+-..+ --..|..|+
T Consensus 168 fav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K----~~dli~dli 241 (432)
T COG5231 168 FAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDK----MDDLINDLI 241 (432)
T ss_pred HHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHH
Confidence 344555555433 55665433332456677788877 445567788899888888876543211111 125677788
Q ss_pred HHHhcC-ChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHHH---------------
Q 015939 186 EILREG-NLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALFDYLKLA--EDQALNDAILSI--------------- 245 (398)
Q Consensus 186 ~lL~~~-~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~a--------------- 245 (398)
.+.+.. ...+-.-++.++.++... + ..-....- .|-+.+-+.+|... +|.+.+...-..
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 888766 334445566677777652 1 22222222 34355556666543 344433322111
Q ss_pred --HHHh-------cC-------CcchHHHHH--HcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHHHHHHhhcc
Q 015939 246 --LITL-------SV-------YRSVKAQLV--ELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEGRLALSEEA 306 (398)
Q Consensus 246 --L~~L-------s~-------~~~~~~~~v--~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~~ 306 (398)
+..| +. ..+|...+. ....+..|..+++...++. ....|+.=+..+. ..|+++.-+.. -
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~Di~~~Vr~~PE~~~vl~K-y 398 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSDIFQLVRASPEINAVLSK-Y 398 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhhHHHHHHhCchHHHHHHH-h
Confidence 1111 00 012333333 2346888999997433332 3445555555554 48899888874 5
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 307 SCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 307 g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
|+=..+.+++..+++.++-+|+.++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 251
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=1.2 Score=45.24 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=83.8
Q ss_pred hhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939 125 LASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD 204 (398)
Q Consensus 125 i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 204 (398)
++.. |+.-+++.=|++ .-.+++.+|+..+..|+.+.++. ....+..|+++++....++|..|..+|.
T Consensus 369 iI~s-GACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~F---------A~~aldfLvDMfNDE~~~VRL~ai~aL~ 435 (823)
T KOG2259|consen 369 IIPS-GACGALVHGLED---EFYEVRRAAVASLCSLATSSPGF---------AVRALDFLVDMFNDEIEVVRLKAIFALT 435 (823)
T ss_pred cccc-cccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCc---------HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445 666666666655 33567899999999999877763 1245889999999999999999999999
Q ss_pred HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 205 SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 205 ~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
.++.+ ..|. ..-++.+.+.|.+. +++++++.-..|.+.-..+-++..|
T Consensus 436 ~Is~~----l~i~--eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m 483 (823)
T KOG2259|consen 436 MISVH----LAIR--EEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDM 483 (823)
T ss_pred HHHHH----heec--HHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99987 2222 34577778888887 7887777766666655555555555
No 252
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.13 Score=48.23 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=36.4
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
.+.|..-.|-||.+-.++-+-+||||+.| |+.-.. ..+.||+|++..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 45566668999999999999999999988 544332 356699998753
No 253
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.25 E-value=5 Score=36.85 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=115.4
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhH-HHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL-LSALFDYLKLA---EDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~-i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
+..+..++..=+.+.+--+..+++.++.++.....+....+. ...+..++... ..+..+--+++++.|+-.+...+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 344445555555666777888898888886665555442322 44455554433 35677888999999998888888
Q ss_pred HHHHHc-C-ChHHHHHHhcccC--cchhhHHHHHHHHHHHhCCHHHHHHHh-hccCcHHHHHHHHhc--cChhHHHHHHH
Q 015939 257 AQLVEL-G-MVQILTRILSDSR--TQILTVEKSIKMLSIVATCSEGRLALS-EEASCAGRVVERVMK--VGKTAREDAVV 329 (398)
Q Consensus 257 ~~~v~~-g-~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~~~~~~~~i~-~~~g~v~~Lv~~l~~--~~~~~~~~a~~ 329 (398)
..+.+. + .+...+..+.... .+..++..+..++.|++..-.....-. .....+..+++.+.. .++++.-.++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 887743 3 3333433332111 156777788888889876221111000 001234455553332 68888899999
Q ss_pred HHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHH
Q 015939 330 VIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDL 375 (398)
Q Consensus 330 ~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~l 375 (398)
+|.++.... ..........|+-..+-...+.+..+++++.+..+
T Consensus 225 AlGtL~~~~--~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 225 ALGTLLSSS--DSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHCCS--HHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhccC--hhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 999999542 33444333356666655555566678898887654
No 254
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=15 Score=36.47 Aligned_cols=163 Identities=15% Similarity=0.064 Sum_probs=91.9
Q ss_pred CcHHHHHHHh-hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhh
Q 015939 130 GFVEAVFGVL-NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSIS 207 (398)
Q Consensus 130 g~v~~L~~lL-~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~ 207 (398)
|....++..+ .+..+++......|++.|.+.+...++. .+++ ..-.+..++.-|..+ +.++...+..+|..+.
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k--v~th---~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK--VRTH---KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH--HHHh---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 4444444333 3335666677899999999999874441 1222 233455555555544 7888888888888776
Q ss_pred cCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC--CcchHHHHHH--cCChHHHHHHhcccCcchhhHH
Q 015939 208 LDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV--YRSVKAQLVE--LGMVQILTRILSDSRTQILTVE 283 (398)
Q Consensus 208 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~~v~--~g~v~~Lv~lL~~~~~~~~~~~ 283 (398)
..-.++....---.+.-.+..+..+. +++.+.++..+...|+. +...+.-+++ .+...+++-.|++ +.+. ..
T Consensus 329 ~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d--~~p~-va 404 (533)
T KOG2032|consen 329 EKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD--PNPY-VA 404 (533)
T ss_pred HhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC--CChH-HH
Confidence 55333333211123344555666676 88899999998888864 3333333332 2233344444432 3343 33
Q ss_pred HHHHHHHHHhCCHHHHHH
Q 015939 284 KSIKMLSIVATCSEGRLA 301 (398)
Q Consensus 284 ~al~~L~~La~~~~~~~~ 301 (398)
.|+......+.-.-.+++
T Consensus 405 ~ACr~~~~~c~p~l~rke 422 (533)
T KOG2032|consen 405 RACRSELRTCYPNLVRKE 422 (533)
T ss_pred HHHHHHHHhcCchhHHHH
Confidence 556665555554444443
No 255
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.93 E-value=0.26 Score=39.36 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=42.3
Q ss_pred CcccccCccccCCCceecC----CCcccchhHHHHHHh--cCCCCCCcccccCCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLC----TGVTYDRSSIQHWLE--SGHDTCPATMQILSTKE 62 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~----~g~~~~r~~i~~~~~--~~~~~CP~~~~~l~~~~ 62 (398)
.-+.|-||++.-.|+--++ ||.+.|-.|-..-|+ .-++.||+|+..++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4567999999999998885 999999999999775 33678999998887543
No 256
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.81 E-value=1.3 Score=31.83 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 015939 196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELG 263 (398)
Q Consensus 196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g 263 (398)
.+.|.+++.+++..+..-..+-+ .++++.++++..+.+...++..+.-+|.-++...+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 45789999999998777777765 79999999999877678889999999999999988888777665
No 257
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.80 E-value=9.1 Score=37.75 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=113.6
Q ss_pred ChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHh-ccc---cCHHHHHHHHHHHHHhcC-Cc
Q 015939 180 CLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL-KLA---EDQALNDAILSILITLSV-YR 253 (398)
Q Consensus 180 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL-~~~---~~~~~~~~a~~aL~~Ls~-~~ 253 (398)
.+..++.+..+. +...+..++.++..|..--.....+ ...+..+..-+ ... ..+...+...|....|.. ++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 455555555444 5666667777777666441111111 23444444444 111 133445555566666653 33
Q ss_pred chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHH-------------HHHHhhccCcHHHHHHHHhcc
Q 015939 254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEG-------------RLALSEEASCAGRVVERVMKV 319 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~-------------~~~i~~~~g~v~~Lv~~l~~~ 319 (398)
..-.. .+..|++++. ++++-..+...+.-|... ++. |+.+.. -.+|.|++..+..
T Consensus 267 ~~~~~-----~~~~L~~lL~----~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 267 PLATE-----LLDKLLELLS----SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA 335 (415)
T ss_pred chHHH-----HHHHHHHHhC----ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc
Confidence 22222 4566888884 367777788888887775 333 445542 4788888888887
Q ss_pred ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..+.+-+.+|..+-.+-+ ...-.---...+|-|++.|... +..++..+...|+.+-+
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILE 394 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 77789999999999888654 3222222244888899999776 67889999888887765
No 258
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.75 E-value=18 Score=35.72 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=74.4
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cc--------h-----HHHHHHcCChHHHHHHhcccCcchhhHHHHH
Q 015939 221 NLLSALFDYLKLAEDQALNDAILSILITLSVY-RS--------V-----KAQLVELGMVQILTRILSDSRTQILTVEKSI 286 (398)
Q Consensus 221 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~--------~-----~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al 286 (398)
..+..|+.+|.++ +....+++++.-|..+ ++ + |+++... .+|.|++-... .+.+.+...+
T Consensus 271 ~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~--~~~~~k~~yL 344 (415)
T PF12460_consen 271 ELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKE--ADDEIKSNYL 344 (415)
T ss_pred HHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhh--cChhhHHHHH
Confidence 3566778888774 5677778888777655 21 2 3344333 67777777743 4455788888
Q ss_pred HHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 287 KMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 287 ~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
.+|..+.. .|...-. -+-+..+|.|++.|.-.+..++..++.+|..+....
T Consensus 345 ~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88888876 3322211 111357888888888888899999999999988753
No 259
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=12 Score=38.93 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=85.0
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc--ccCHHHHHHHHHHHHHhcCCcch
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL--AEDQALNDAILSILITLSVYRSV 255 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~aL~~Ls~~~~~ 255 (398)
.|.+--++.+|++.+.+++..+..+...|....+.-+.+ . =.-..+.+--.. ..+.+-++.-+++|...+..-..
T Consensus 316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv-~--~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV-Q--FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH-H--HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 355556677788889999999888888777653322211 1 001111111111 12334577788888887764432
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH-hCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHH
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV-ATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWS 333 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~ 333 (398)
+.+.+|+.|++.+++ .++...-..+..++.. -..|.-|..+.+ .++.-+.. .+.+.-+-|++++..
T Consensus 393 ----~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~~~~~~irS~ki~rgalwi~Ge 460 (948)
T KOG1058|consen 393 ----VAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKFPNLRASIIE------KLLETFPQIRSSKICRGALWILGE 460 (948)
T ss_pred ----HHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHHHhhhhhcccccchhHHHHHHH
Confidence 334578999999953 4555444444444443 235555555543 35554443 677888888888888
Q ss_pred hhcc
Q 015939 334 MCCV 337 (398)
Q Consensus 334 l~~~ 337 (398)
-|-.
T Consensus 461 Yce~ 464 (948)
T KOG1058|consen 461 YCEG 464 (948)
T ss_pred HHhh
Confidence 7754
No 260
>PRK14707 hypothetical protein; Provisional
Probab=90.51 E-value=42 Score=39.48 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
++.+..++.-|+.... .+.+..|...|..-...++..|..+-. -.|.-.++-|+.+++. .....|...|..-...
T Consensus 792 pQ~vAn~LNALSKWPe-~~~Cr~AA~~LA~rLa~dp~Lr~af~A--Q~VANaLNALSKWPd~--~~Cr~AA~aLA~RLa~ 866 (2710)
T PRK14707 792 PREMTNALNALSKWPD-TPACAAAASALAARVADDPRLREAFDV--QHVATVLNAMSKWPDN--AVCAAAAGAMAERLAD 866 (2710)
T ss_pred HHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHhcChhHHHhcCH--HHHHHHHHHhccCCCc--hHHHHHHHHHHHHHhc
Confidence 3456666666666544 246777888887655565666666543 4577778888775543 3456666666544333
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALND 240 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~ 240 (398)
+.. .+.. + +...+.-.++-|+.= ....+..|..+-..|..+++.+..+. ...|.-.+.-|+.-. .+..+.
T Consensus 867 e~~---LR~a-L-~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~--aQ~VAN~LNALSKWPd~~~Cr~ 939 (2710)
T PRK14707 867 EPE---LRHT-L-TAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALS--AHRVATALNALSKWPDIPVCAT 939 (2710)
T ss_pred Chh---hhhc-c-chHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhcc--HHHHHHHHhhhccCCCchHHHH
Confidence 332 1222 2 333344444445422 44445444444447777777777764 456677777777653 444555
Q ss_pred HHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc--
Q 015939 241 AILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-- 318 (398)
Q Consensus 241 ~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-- 318 (398)
++......|....+-+..|- .-.+...+.-|+..++.+.....+..+-..|...+..|+.+- +-.+...++.|.+
T Consensus 940 Aa~aLA~rLa~d~~Lr~Aln-~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~--aQ~vAN~LNALSKWP 1016 (2710)
T PRK14707 940 AASALAERLSDDPDLREALD-ASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALD--PIGMANALNALSKWL 1016 (2710)
T ss_pred HHHHHHHHhccChhhhhhcc-HHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcc--hHHHHHHHhhhhcCC
Confidence 55555556666666655443 335666666776555555555555555566888888887764 4567777777776
Q ss_pred cChhHHHHHHHHHHHhhc
Q 015939 319 VGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 319 ~~~~~~~~a~~~L~~l~~ 336 (398)
..+..++.|..+-..|..
T Consensus 1017 d~~~Cr~AA~~LA~rLa~ 1034 (2710)
T PRK14707 1017 QMPVCAATVEALAARLSN 1034 (2710)
T ss_pred CchHHHHHHHHHHHHhcc
Confidence 345555555555555543
No 261
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.45 E-value=4.5 Score=44.14 Aligned_cols=228 Identities=15% Similarity=0.100 Sum_probs=129.4
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--
Q 015939 132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-- 209 (398)
Q Consensus 132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-- 209 (398)
++.+.+.++.-... +...+|+..|..++..-++. ++ -..++|-++.++.....++|..|..+|..+...
T Consensus 424 vs~lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de--~~-----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTI--QTKLAALELLQELSTYIDDE--VK-----LDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred HHHHHHHHHhhhcc--hhHHHHHHHHHHHhhhcchH--HH-----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 55555665542222 23478999999888765541 12 246899999999999999999999998855322
Q ss_pred --chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC------------------CcchH------------H
Q 015939 210 --NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV------------------YRSVK------------A 257 (398)
Q Consensus 210 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~------------------~~~~~------------~ 257 (398)
+..-..|.- .=.+|.|-+++.+....-++-+-+..|..|+. ++.|- .
T Consensus 495 ~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 495 DIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred CCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence 333344444 45888899998874122233333333333321 11111 1
Q ss_pred HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939 258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~ 337 (398)
++. .++=.....+|.+ +++-|++.-+..|.-||. =-+|+.- +.=.++.|+.+|.+.+...+-.-..-+.-++.+
T Consensus 574 ~L~-~~V~~~v~sLlsd--~~~~Vkr~Lle~i~~LC~-FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 574 ALH-HTVEQMVSSLLSD--SPPIVKRALLESIIPLCV-FFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHH-HHHHHHHHHHHcC--CchHHHHHHHHHHHHHHH-Hhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 110 1122233445532 344555555555555554 1111111 113467788888877666665555555444443
Q ss_pred CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
-+ ..-+.++.+|-|.+-|..+ .+-+-.+|...|..|-+
T Consensus 648 VG-----~rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 648 VG-----WRSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIK 685 (1431)
T ss_pred Ee-----eeeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence 22 1113466777777777655 77888899888888877
No 262
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=4.8 Score=42.37 Aligned_cols=187 Identities=15% Similarity=0.128 Sum_probs=112.3
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
....+..+++.-+.+|..+...|+.+....+.+..+.. .+++...++.|++. |+=+--+|...+..||.- .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------c
Confidence 55566667777788999999999999987666666666 78999999999998 665666777766666632 2
Q ss_pred HcCChHHHHH-HhcccCcc-hhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939 261 ELGMVQILTR-ILSDSRTQ-ILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 261 ~~g~v~~Lv~-lL~~~~~~-~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~ 337 (398)
....+|-|.+ ..+..... ++.+-+.-.++.++.. ..+-.....+ -.+......+++++..-+..+++.|.++|.-
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 2335566665 33211100 1111111122233221 1222222221 1223333334445555588888889888864
Q ss_pred CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.. ......+ ..++..++.+.+++++.-.|+.|..++..+-.
T Consensus 878 ~a-~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 878 LA-FQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred Hh-hhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 31 1122222 33577788888889899999999988877655
No 263
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.22 E-value=0.24 Score=45.68 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=35.5
Q ss_pred cccCccccCC----CceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 15 RCPISLDVMK----SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 15 ~Cpi~~~~~~----dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
.||+|-+.|. +-.--+||+..||-|.......-+..||.||....+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4999999884 33335699999999966654433567999998877654
No 264
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=27 Score=36.75 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=132.7
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939 89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE 168 (398)
Q Consensus 89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~ 168 (398)
.|...|.|..++ .+.+|.+.|-.+...+.... ...|.+|.-..+ .+ .++..-.---|...+..+++
T Consensus 39 dL~~lLdSnkd~--~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVas-kn--~EVKkLVyvYLlrYAEeqpd-- 104 (968)
T KOG1060|consen 39 DLKQLLDSNKDS--LKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVAS-KN--IEVKKLVYVYLLRYAEEQPD-- 104 (968)
T ss_pred HHHHHHhccccH--HHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhc-cC--HHHHHHHHHHHHHHhhcCCC--
Confidence 466777777665 78899988877665544433 345556777766 33 34435444455555554443
Q ss_pred HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939 169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT 248 (398)
Q Consensus 169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 248 (398)
-.. =-|..+-+-|+..++.+|..|.++|..+-.. +.. .=.+-++-+...+. ++-+++.|+.||-.
T Consensus 105 --LAL-----LSIntfQk~L~DpN~LiRasALRvlSsIRvp------~Ia-PI~llAIk~~~~D~-s~yVRk~AA~AIpK 169 (968)
T KOG1060|consen 105 --LAL-----LSINTFQKALKDPNQLIRASALRVLSSIRVP------MIA-PIMLLAIKKAVTDP-SPYVRKTAAHAIPK 169 (968)
T ss_pred --cee-----eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHH-HHHHHHHHHHhcCC-cHHHHHHHHHhhHH
Confidence 111 2467777888888999998777777655332 111 11222233344455 78899999999999
Q ss_pred hcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939 249 LSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA 327 (398)
Q Consensus 249 Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a 327 (398)
|=+ +.+.+.++ +..+=.+| .+.++.|+..|+.+...+|- +. -.+. + +-...+.+++...+...|-..
T Consensus 170 LYsLd~e~k~qL-----~e~I~~LL--aD~splVvgsAv~AF~evCP--er-ldLI-H-knyrklC~ll~dvdeWgQvvl 237 (968)
T KOG1060|consen 170 LYSLDPEQKDQL-----EEVIKKLL--ADRSPLVVGSAVMAFEEVCP--ER-LDLI-H-KNYRKLCRLLPDVDEWGQVVL 237 (968)
T ss_pred HhcCChhhHHHH-----HHHHHHHh--cCCCCcchhHHHHHHHHhch--hH-HHHh-h-HHHHHHHhhccchhhhhHHHH
Confidence 854 44555443 33455566 35788999999988888875 33 3333 2 557778888888888888888
Q ss_pred HHHHHHhhcc
Q 015939 328 VVVIWSMCCV 337 (398)
Q Consensus 328 ~~~L~~l~~~ 337 (398)
+..|..-|++
T Consensus 238 I~mL~RYAR~ 247 (968)
T KOG1060|consen 238 INMLTRYARH 247 (968)
T ss_pred HHHHHHHHHh
Confidence 8888776654
No 265
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.11 E-value=1.5 Score=36.22 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=62.3
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-|..+++.++-.|+.+|..+..+.| .....++...+.+..|..++.....+.+|+++..+++.-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999887654 67788888999999999999767788999999999988887
No 266
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.05 E-value=19 Score=34.78 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=106.1
Q ss_pred hHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH-HHHhcCCcchHHH
Q 015939 181 LPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI-LITLSVYRSVKAQ 258 (398)
Q Consensus 181 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a-L~~Ls~~~~~~~~ 258 (398)
+..+++-|.++ +..+|..++.-|..-..+++.+..+.. +|.++.+++.+.+..+.....-++.+ ++-|+.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45555555533 667787887778888888999999988 89999999998654233244433334 3444444433333
Q ss_pred HHHcCChHHHHHHhc--cc----------------------------------------CcchhhHHHHHHHHHHHh---
Q 015939 259 LVELGMVQILTRILS--DS----------------------------------------RTQILTVEKSIKMLSIVA--- 293 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~--~~----------------------------------------~~~~~~~~~al~~L~~La--- 293 (398)
+-+.+....++.++. .. .....-+--|+.+|..++
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~ 181 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL 181 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence 334444444455443 00 011112223555555553
Q ss_pred -----C-------CHHHHHHHhhccCcHHHHHHHHhc----c------------ChhHHHHHHHHHHHhhccCCChhHHH
Q 015939 294 -----T-------CSEGRLALSEEASCAGRVVERVMK----V------------GKTAREDAVVVIWSMCCVYKDARVKE 345 (398)
Q Consensus 294 -----~-------~~~~~~~i~~~~g~v~~Lv~~l~~----~------------~~~~~~~a~~~L~~l~~~~~~~~~~~ 345 (398)
. .+.-++++. ..|++..++..+.. . +-..-+.++++|.+.+..+. ++..
T Consensus 182 ~~~~~~~~t~~~~~~~fkeelr-~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~--~nq~ 258 (361)
T PF07814_consen 182 REAGDLSETSSRAGEWFKEELR-ELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE--ENQS 258 (361)
T ss_pred hhcccchhhhhhccccchhhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc--cchH
Confidence 1 111133444 45889999999862 1 11224578899999887653 2222
Q ss_pred HH--HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 346 AV--VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 346 ~~--~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
.. ...+.++.++..+-..+.+...+.-...++.+
T Consensus 259 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrll 294 (361)
T PF07814_consen 259 YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLL 294 (361)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 22 23455555555554343445544333334433
No 267
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.60 E-value=5.6 Score=40.41 Aligned_cols=111 Identities=9% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHHhhCCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHH
Q 015939 71 RLIAHWSHQLTVP-EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAV 149 (398)
Q Consensus 71 ~~i~~~~~~~p~p-~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~ 149 (398)
..|.+|+...|+- .+.+..++......+.. .+..|++.|-.+|++++++...+ +..|+.+|.+ .+ ...
T Consensus 44 q~I~kffk~FP~l~~~Ai~a~~DLcEDed~~--iR~~aik~lp~~ck~~~~~v~kv------aDvL~QlL~t-dd--~~E 112 (556)
T PF05918_consen 44 QFIPKFFKHFPDLQEEAINAQLDLCEDEDVQ--IRKQAIKGLPQLCKDNPEHVSKV------ADVLVQLLQT-DD--PVE 112 (556)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHHHHHT-SSHH--HHHHHHHHGGGG--T--T-HHHH------HHHHHHHTT------HHH
T ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHhHHHHHhHH------HHHHHHHHhc-cc--HHH
Confidence 3455555667765 44566666666655544 88999999999998855544333 5568888887 32 222
Q ss_pred HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh---cCChhhHHHHHHHHH
Q 015939 150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR---EGNLDSKIGSIKILD 204 (398)
Q Consensus 150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~ 204 (398)
...+-.+|..+...++. +.+..+.+-+. +++..+|+.+...|.
T Consensus 113 ~~~v~~sL~~ll~~d~k------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK------------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHHHHHH-HH------------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH------------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 23344455544433221 23444444444 667788998888775
No 268
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.45 E-value=1.8 Score=35.87 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=61.9
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-|...++.++-.|+.+|..+..+.| .....++...+.+..|..++.......+|++...+++..+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 45567777777899999999999999988765 67788888999999999999775688999999999998876
No 269
>PRK14707 hypothetical protein; Provisional
Probab=89.29 E-value=52 Score=38.77 Aligned_cols=267 Identities=11% Similarity=0.038 Sum_probs=152.8
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+.-++.-++....+ ..+..++..|..+...++..|..+- . .+|..+++-+..+++ ++ ..++|+..|.....++..
T Consensus 165 ~~lllNafSKw~~~-~~c~~aa~~la~~~~~~d~~~~~~~-~-q~ia~~lNa~sKWp~-~~-~c~~aa~~la~~l~~~~~ 239 (2710)
T PRK14707 165 ISLALNAFSKWSDN-PDCQAVAPRFAALVASDDRLRSAMD-A-QGVATVLNALCKWPD-TP-DCGNAVSALAERLADESR 239 (2710)
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHhcCChhhhcccc-h-HHHHHHHHHHhcCCC-Ch-hHHHHHHHHHHHHcCcHH
Confidence 44445555544332 4678888888776655566666663 3 678888888887544 33 346777777665554433
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccccCHHH-HHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLAEDQAL-NDAIL 243 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~a~ 243 (398)
.+.. .+...+.-.++-|+.= +...-.+++..|- .|+.+...+..+. ...+.-.+.-|+.-.+..+ ..++.
T Consensus 240 ---l~~~--~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~--~q~vanalNalSKwpd~~vc~~Aa~ 312 (2710)
T PRK14707 240 ---LRNE--LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD--PINVTQALNALSKWADLPVCAEAAI 312 (2710)
T ss_pred ---HHHh--CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC--HHHHHHHHhhhhcCCCchHHHHHHH
Confidence 1332 3555666667777643 3333344444444 7777666655554 3344555555555434444 44444
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChh
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKT 322 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~ 322 (398)
.+-..|..+.+-++. .+.-.+..++.-|+...++......|..+-..|+.+++-++.+- ..++..+++.+.+ .+..
T Consensus 313 ~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~~lNalsKWp~~~ 389 (2710)
T PRK14707 313 ALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE--PQGVSSVLNALSKWPDTP 389 (2710)
T ss_pred HHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc--hhHHHHHHhhhhcCCCch
Confidence 445566665555533 45556677777776544444444444444455888888888875 3567778888877 4455
Q ss_pred HHHHHHHHHHH-hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 323 AREDAVVVIWS-MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 323 ~~~~a~~~L~~-l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
+...|+..|.. +. +|.+.++.+-..|+ ..++..|....+..+-..|
T Consensus 390 ~c~~aa~~LA~~l~---~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~a 436 (2710)
T PRK14707 390 VCAAAASALAEHVV---DDLELRKGLDPQGV-SNALNALAKWPDLPICGQA 436 (2710)
T ss_pred HHHHHHHHHHHHhc---cChhhhhhcchhhH-HHHHHHhhcCCcchhHHHH
Confidence 55555555543 44 34566665555544 4466666555444444443
No 270
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=6.8 Score=42.28 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=96.0
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~ 299 (398)
.++++.|+..|++. +..++..|++-+..+....+ ..+++. +|...++++. +-+++..---++-+|..|+.-.--.
T Consensus 340 E~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcc
Confidence 46788888888888 88899999999999987766 444444 7778888664 3344555557888888888622222
Q ss_pred HHHhhccCcHHHHHHHHhc--------cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHH
Q 015939 300 LALSEEASCAGRVVERVMK--------VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKM 371 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~ 371 (398)
-...+ .++|.+++-+.- .+..+++.|+-+.|.++......+... ++ ......|+...--+..-..|+.
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHH
Confidence 22221 345555554421 467789999999999998753222222 11 2233333333334445567777
Q ss_pred HHHHHHH-Hhc
Q 015939 372 CGDLVKV-LGK 381 (398)
Q Consensus 372 A~~lL~~-l~~ 381 (398)
|..+++. .++
T Consensus 491 AsAAlqE~VGR 501 (1133)
T KOG1943|consen 491 ASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHhcc
Confidence 7666654 444
No 271
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.76 E-value=34 Score=36.57 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=103.3
Q ss_pred cCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh--cCChhhHHHHHHHHHH
Q 015939 128 YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR--EGNLDSKIGSIKILDS 205 (398)
Q Consensus 128 ~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~ 205 (398)
.|+++..|..+... .+.+++.....+|...+.-++.. .. ..+.-+.|.++.+.. +.++.+...+-.++..
T Consensus 528 ~p~ild~L~qlas~---~s~evl~llmE~Ls~vv~~dpef----~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 528 QPMILDGLLQLASK---SSDEVLVLLMEALSSVVKLDPEF----AA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEE 599 (1005)
T ss_pred chHHHHHHHHHccc---ccHHHHHHHHHHHHHHhccChhh----hh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34666677777655 23456677777888888776652 22 335567777777654 4477777777788888
Q ss_pred hhcCchhHHHhhchhhHHHHHHHHhcccc---CHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHHHHhcccCcchh
Q 015939 206 ISLDNESKRRVLETENLLSALFDYLKLAE---DQALNDAILSILITLSVYRS--VKAQLVELGMVQILTRILSDSRTQIL 280 (398)
Q Consensus 206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv~lL~~~~~~~~ 280 (398)
|+...++...+. .-.||.|+..|..+. .+....-++..|-.+..+.+ --..++.. ++|++++..- +++|.+
T Consensus 600 l~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tl-HsdD~~ 675 (1005)
T KOG2274|consen 600 LLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITL-HSDDHE 675 (1005)
T ss_pred HHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhhee-ecCChH
Confidence 887644443332 357999999998661 24566667777776654332 22233333 8899998886 467888
Q ss_pred hHHHHHHHHHHHhCC
Q 015939 281 TVEKSIKMLSIVATC 295 (398)
Q Consensus 281 ~~~~al~~L~~La~~ 295 (398)
...++-.+|+.+-..
T Consensus 676 tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 676 TLQNATECLRALISV 690 (1005)
T ss_pred HHHhHHHHHHHHHhc
Confidence 899999999997663
No 272
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.76 E-value=0.97 Score=44.23 Aligned_cols=160 Identities=9% Similarity=0.065 Sum_probs=91.0
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhh----hhhhhhhhhhhcCC-cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFAT----GCEANRRFLASYGG-FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~----~~~~~r~~i~~~~g-~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
++..|.+...+ .+.++.+.+.++.. .-|..+.+-.+..| .+..++..-........++..+|+++|.|+..--
T Consensus 438 il~sl~d~~ln--~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 438 ILMSLEDKSLN--VRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHhhhHhHh--HHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 34444444444 77778777776542 22332222221101 1222222222112223467789999999887532
Q ss_pred chHH--HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHH
Q 015939 165 GVKE--KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDA 241 (398)
Q Consensus 165 ~~~~--~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~ 241 (398)
+.-+ .+ .. +.+...+..+-..+-.+...+|.+++.++.||..++..+..-.. ...+++.|..++.+..+.+++..
T Consensus 516 q~i~~~~~-~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 516 QPIEKPTF-AE-IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHhhhccH-HH-HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 2110 11 11 11222222222333456789999999999999999765433222 14578999999998889999999
Q ss_pred HHHHHHHhcCCc
Q 015939 242 ILSILITLSVYR 253 (398)
Q Consensus 242 a~~aL~~Ls~~~ 253 (398)
|+.+|..-....
T Consensus 594 AA~aL~vp~~re 605 (728)
T KOG4535|consen 594 AAAALSVPGKRE 605 (728)
T ss_pred hhhhhcCCCCcc
Confidence 999998776543
No 273
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.76 E-value=1.9 Score=38.56 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHhhcCchhHHHhhch------hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch-HHHH-HHcCC
Q 015939 193 LDSKIGSIKILDSISLDNESKRRVLET------ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV-KAQL-VELGM 264 (398)
Q Consensus 193 ~~~~~~a~~~L~~L~~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~-~~~~-v~~g~ 264 (398)
..-|..|..+|..|+..+.|-+.+..+ ...+..|+++|....++-.++-|+..|.+|+..++. +..+ .+.++
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 466889999999999998888887652 234566777777777888999999999999987763 3333 38899
Q ss_pred hHHHHHHhc
Q 015939 265 VQILTRILS 273 (398)
Q Consensus 265 v~~Lv~lL~ 273 (398)
|..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999994
No 274
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.66 E-value=2.6 Score=34.29 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=59.8
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh--cCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS--ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~--~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|-+-|+.+++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.. ..++.+|+++..+++..+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34557777888999999999999999888754 5677777777888888888865 4578999999999988887
No 275
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.36 Score=45.49 Aligned_cols=33 Identities=24% Similarity=0.622 Sum_probs=30.4
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhc
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES 46 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~ 46 (398)
-.|.++...|.|||-+..|-.|+-..|-.|+..
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk 73 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK 73 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence 368899999999999999999999999999863
No 276
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=0.14 Score=46.35 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=30.8
Q ss_pred cccccCccccCCCceecCCCccc-chhHHHHHHhcCCC--CCCcccccC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTY-DRSSIQHWLESGHD--TCPATMQIL 58 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~--~CP~~~~~l 58 (398)
+.+|-||.+.-.|=|.|+|||.. |-+| |.+ .||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 67899999999999999999954 3333 432 699998753
No 277
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.24 E-value=37 Score=35.77 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=28.5
Q ss_pred HhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 229 YLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 229 lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+|.+. ++.+..+++.+.|.++.-.++. +.+.+|+++|++
T Consensus 295 Ll~S~-n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs 333 (968)
T KOG1060|consen 295 LLQSR-NPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRS 333 (968)
T ss_pred HHhcC-CcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhc
Confidence 44455 7889999999999998655433 246788888864
No 278
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.06 E-value=1.7 Score=35.71 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=59.8
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHH---HHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGI---VRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~---~k~~A~~lL~~l~~ 381 (398)
++..|-+-|..+++.++..|+.+|..+..+.+ +....++.....+..|..++....... +|+++..+++..+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg-~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCG-PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34557777888999999999999999888754 678888888889999999886654554 89999999888777
No 279
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.96 E-value=0.21 Score=51.02 Aligned_cols=67 Identities=16% Similarity=0.352 Sum_probs=47.6
Q ss_pred CCCcccccCccccCCCceecCCCcccchhHHHHHHh--cCCCCCCcccccCCCCCCcccHHHHHHHHHH
Q 015939 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE--SGHDTCPATMQILSTKEFVPNLTLHRLIAHW 76 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~--~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 76 (398)
+.....||||.....+|+.++|-|.||+.|+-..|. .+...||+|+-........-.....+++++.
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 345568999999999999999999999999988653 3456799998555433322233334444443
No 280
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.73 E-value=46 Score=36.29 Aligned_cols=244 Identities=14% Similarity=0.068 Sum_probs=137.1
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..|++.+++.+.. .+=.|++.+..+....| ..+++ .++...++++.. .+ +......++-+|..|+...-.
T Consensus 343 ie~Lls~l~d~dt~--VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p-~e-~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTV--VRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNP-AE-DDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHhccCCcch--hhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCc-CC-chhHHHHHHHHHHHHHhcCCc
Confidence 33445555555543 66678888888887766 23333 456667776654 22 234557888888888753221
Q ss_pred HHHhhHhhhccCCChHHHHHHHh--------cCChhhHHHHHHHHHHhhcCchhH--HHhhchhhHHHH-HHHHhccccC
Q 015939 167 KEKLNRLILNTYNCLPLFLEILR--------EGNLDSKIGSIKILDSISLDNESK--RRVLETENLLSA-LFDYLKLAED 235 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~--------~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~i~~-Lv~lL~~~~~ 235 (398)
-+. + -..++|.++.-|+ +....+|..|+.+++.++...+.. ..+.. ..... |+..+-+. +
T Consensus 414 lps-~-----l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~--~L~s~LL~~AlFDr-e 484 (1133)
T KOG1943|consen 414 LPS-L-----LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ--SLASALLIVALFDR-E 484 (1133)
T ss_pred chH-H-----HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH--HHHHHHHHHHhcCc-h
Confidence 000 0 1245666666664 224578999999999998773322 11211 22233 23344555 7
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcch--hhHHHHHHHHHH-HhCCHHHHHHHhhccCcHHHH
Q 015939 236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQI--LTVEKSIKMLSI-VATCSEGRLALSEEASCAGRV 312 (398)
Q Consensus 236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~-La~~~~~~~~i~~~~g~v~~L 312 (398)
...+++|..|+........|. |.=+++++. -+.- ..+.++-..|.. ++..+.-++.+.++ +
T Consensus 485 vncRRAAsAAlqE~VGR~~n~---------p~Gi~Lis~-~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~------L 548 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNF---------PHGISLIST-IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH------L 548 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCC---------CCchhhhhh-cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH------H
Confidence 889999999998876554332 222233321 0111 222233333322 33334344444322 2
Q ss_pred HHH-HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHH
Q 015939 313 VER-VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKM 371 (398)
Q Consensus 313 v~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~ 371 (398)
+.. +...+...++.|..+|..|+.. ..+-...+++++++....+. +...|.-
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~------~pk~~a~~~L~~lld~~ls~-~~~~r~g 601 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLT------EPKYLADYVLPPLLDSTLSK-DASMRHG 601 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHh------hHHhhcccchhhhhhhhcCC-ChHHhhh
Confidence 222 3347999999999999998853 34555677888888777655 4554443
No 281
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.46 E-value=1.6 Score=42.75 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC----CcchHHHHHH---cCChHH
Q 015939 195 SKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV----YRSVKAQLVE---LGMVQI 267 (398)
Q Consensus 195 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~----~~~~~~~~v~---~g~v~~ 267 (398)
++..|.+.+..+..++..+.-..-...+...++..|.+. ....+..+.+++.|++. +-.+-....+ .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 444555555555556655544443356677777888776 67788899999998853 2223221211 112222
Q ss_pred HHHHhc-ccCcchhhHHHHHHHHHHHhCCHHHH-----HHHhhccCcHHHHHHH-HhccChhHHHHHHHHHHHhhccCCC
Q 015939 268 LTRILS-DSRTQILTVEKSIKMLSIVATCSEGR-----LALSEEASCAGRVVER-VMKVGKTAREDAVVVIWSMCCVYKD 340 (398)
Q Consensus 268 Lv~lL~-~~~~~~~~~~~al~~L~~La~~~~~~-----~~i~~~~g~v~~Lv~~-l~~~~~~~~~~a~~~L~~l~~~~~~ 340 (398)
++..-. ......++..++...|.|+..--+.. ..+. + |.+..+..- .-.+.-+++=+|+.++.||-++..
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a- 562 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-E-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA- 562 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-H-HHHHhcccceecccccccchHHHHHHHHhhcCcc-
Confidence 332221 12345678889999999987622211 1222 1 222222221 123677888999999999987521
Q ss_pred hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 341 ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 341 ~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
-.....--..-+++.|+.++.+..+-++|-+|+.+|..-.
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 1122222334578888888877778889888888775433
No 282
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.31 E-value=8.3 Score=40.21 Aligned_cols=187 Identities=10% Similarity=0.000 Sum_probs=124.9
Q ss_pred hccCCChHHHHHHHhcCChhhHHHHHHHHHH-hhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-
Q 015939 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDS-ISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY- 252 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~- 252 (398)
....|+...|..+...+..+.+.+...+|.. +.. +.. .....++++...+++....-..-.++.++.||++.
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s 573 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGE-----RSYEVVKPLDSALHNDEKGLENFEALEALTNLASIS 573 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence 5588999999999998888888888888872 111 111 11345666666666542222345788899999764
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH-HhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLA-LSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
...+..+...-+++.+-+++. .+++..+..++..+.||.-++-.... +++....++.....+........-.+++++
T Consensus 574 ~s~r~~i~ke~~~~~ie~~~~--ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~ 651 (748)
T KOG4151|consen 574 ESDRQKILKEKALGKIEELMT--EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGAL 651 (748)
T ss_pred hhhHHHHHHHhcchhhHHHhh--cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccc
Confidence 457777887767777666663 46889999999999999998876554 454456778777777766666666667666
Q ss_pred HHhhccCCChhHHH-HHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 332 WSMCCVYKDARVKE-AVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 332 ~~l~~~~~~~~~~~-~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
..|+... ..... ..--......++..++++ ++.+|..-
T Consensus 652 a~I~sv~--~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrg 690 (748)
T KOG4151|consen 652 AAITSVV--ENHCSRILELLEWLEILVRAIQDE-DDEIQHRG 690 (748)
T ss_pred cchhhcc--hhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhh
Confidence 6555443 22222 333355666677777665 56666554
No 283
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.24 E-value=23 Score=32.28 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=48.5
Q ss_pred CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
-+|+.|.+.|.+....+.++-.|+.+|..++. +.+++.|.+++.+.++-+++.+..+|-.+-.
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 36889999887666788888899999998875 3456667777777888888888877765544
No 284
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.16 E-value=3.8 Score=43.38 Aligned_cols=146 Identities=13% Similarity=0.205 Sum_probs=97.2
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-TYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
..+|.|++.... .+++.+ .+=+.+|.+...+-+. ..++- -+..+|.|++-|+-.|.++|..+..+|..+..
T Consensus 867 ~ivP~l~~~~~t-~~~~~K--~~yl~~LshVl~~vP~-----~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 867 DIVPILVSKFET-APGSQK--HNYLEALSHVLTNVPK-----QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred hhHHHHHHHhcc-CCccch--hHHHHHHHHHHhcCCH-----HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 568999988885 444444 5566677766665442 22121 35678999999999999999999999987655
Q ss_pred C-chhHHHhhchhhHHHHHHHHhccccC--HHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939 209 D-NESKRRVLETENLLSALFDYLKLAED--QALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEK 284 (398)
Q Consensus 209 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~ 284 (398)
. +.....-+ .-.+|.++.+=++.++ ..++..|+.+|..|.. -+.+.-.-..-.++.+|+..|.+ ...-+++.
T Consensus 939 ~~~tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD--kKRlVR~e 1014 (1030)
T KOG1967|consen 939 ESETLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD--KKRLVRKE 1014 (1030)
T ss_pred hccccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc--HHHHHHHH
Confidence 4 32222211 3467777776665532 6789999999999987 44443333455588889999943 45556666
Q ss_pred HHH
Q 015939 285 SIK 287 (398)
Q Consensus 285 al~ 287 (398)
|..
T Consensus 1015 Av~ 1017 (1030)
T KOG1967|consen 1015 AVD 1017 (1030)
T ss_pred HHH
Confidence 654
No 285
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.09 E-value=26 Score=32.73 Aligned_cols=167 Identities=11% Similarity=0.100 Sum_probs=102.3
Q ss_pred HHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH--HHh
Q 015939 93 KIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK--EKL 170 (398)
Q Consensus 93 ~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~--~~~ 170 (398)
.+.+.+. +.+..|+++|...+--+. +... ..++.+...++. . +..+...|+.++..+...-+.. ...
T Consensus 35 ~v~~~~~--~vR~~al~cLGl~~Lld~---~~a~---~~l~l~~~~~~~-~--~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 35 AVQSSDP--AVRELALKCLGLCCLLDK---ELAK---EHLPLFLQALQK-D--DEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HhcCCCH--HHHHHHHHHHHHHHHhCh---HHHH---HHHHHHHHHHHh-C--CHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3455554 388899999998886644 2222 235666777744 2 4566788999988776532210 000
Q ss_pred hH--hhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHH
Q 015939 171 NR--LILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---EDQALNDAILSI 245 (398)
Q Consensus 171 ~~--~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~a 245 (398)
.. .-......+..+.+.|++.+++++..|+..+..|...+.... ...++..|+-+.-++ ++..+++--...
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 00 001123578888899999999999999999998876643322 145666666665554 234444444444
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+-..+......+..+..+.++.+-.+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 55667655544455556688888887753
No 286
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=87.08 E-value=21 Score=36.78 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcC--CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC-C
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYG--GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY-N 179 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~--g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~-g 179 (398)
.+.-|+..|+.+.++...+-.++-... ..+..++..+. .++..+-.++++|.|+..+... ++.+.... .
T Consensus 560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~----~~~an~ll~vR~L~N~f~~~~g----~~~~~s~~~~ 631 (745)
T KOG0301|consen 560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN----ADPANQLLVVRCLANLFSNPAG----RELFMSRLES 631 (745)
T ss_pred HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc----cchhHHHHHHHHHHHhccCHHH----HHHHHHHHHH
Confidence 567788888887776555444333220 23333343333 2233446788999999887544 34322221 1
Q ss_pred ChHHHHHHHhcC-ChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhc----cccCHHHHHHHHHHHHHhcCC
Q 015939 180 CLPLFLEILREG-NLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLK----LAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 180 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
.+..++. .++. +..++...+....|++.. ..+.. .|+.+.|...+. ...+.++.-.++.||.+|+..
T Consensus 632 i~~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 632 ILDPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred Hhhhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 2222222 2233 345554433333344332 11111 233344443333 223445566778888888988
Q ss_pred cchHHHHHHcCChHHHHHHhcc
Q 015939 253 RSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+.+..++..--.|..++.-+++
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHH
Confidence 8888888876677788777763
No 287
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.00 E-value=7.6 Score=29.75 Aligned_cols=95 Identities=13% Similarity=0.284 Sum_probs=63.9
Q ss_pred hhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHh
Q 015939 194 DSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRIL 272 (398)
Q Consensus 194 ~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL 272 (398)
++|..|..=|. .+...--....+....+.+..|+...... +......++..|..|...+.....+.+-|++..|-++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 45554443332 33333222233334467888888888777 45588999999999999999999999999999977776
Q ss_pred cccCcchhhHHHHHHHHHH
Q 015939 273 SDSRTQILTVEKSIKMLSI 291 (398)
Q Consensus 273 ~~~~~~~~~~~~al~~L~~ 291 (398)
+..++......-+++..
T Consensus 81 --~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 81 --PNVEPNLQAEIDEILDQ 97 (98)
T ss_pred --hcCCHHHHHHHHHHHhc
Confidence 34566666665555543
No 288
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.96 E-value=23 Score=39.93 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred HHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHHHHhcc
Q 015939 197 IGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS--VKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 197 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv~lL~~ 274 (398)
..+.++...|+...+.-..+ .+.+..++..|..+ .+.++..|+++|..+...+. -+...|..|+...+.
T Consensus 795 ~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~----- 865 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN----- 865 (1692)
T ss_pred hhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----
Confidence 44555666666553333222 46788888888877 88999999999999976554 233344444433322
Q ss_pred cCcchhhHHHHHHHHHHH-hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCH
Q 015939 275 SRTQILTVEKSIKMLSIV-ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGL 353 (398)
Q Consensus 275 ~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~ 353 (398)
+++..|++.|+..+... ...++...++.+ .+.+-+.+.+-.++++++++|..+|-..++=..... ..
T Consensus 866 -DssasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~c 933 (1692)
T KOG1020|consen 866 -DSSASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD-----MC 933 (1692)
T ss_pred -cchhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HH
Confidence 35788999999999863 446666666653 356667778999999999999999987643222222 22
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCC
Q 015939 354 TKLLLVMQSENEGIVRKMCGDLVKVLGKASGLG 386 (398)
Q Consensus 354 ~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~ 386 (398)
.+++.-+... ...+++-+...+..++=.+|..
T Consensus 934 akmlrRv~DE-Eg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 934 AKMLRRVNDE-EGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHhccCCCc
Confidence 2444444322 2337888887777776655544
No 289
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.90 E-value=39 Score=34.49 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=73.1
Q ss_pred CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChh
Q 015939 263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDAR 342 (398)
Q Consensus 263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 342 (398)
|.+..+++-+ .+.+..++..++.+|+.+..+-......+. .|.+..|.+-+-+..+.++..|+.+|..+--.+++++
T Consensus 91 ~~~~h~lRg~--eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGT--ESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcc--cCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3555666666 346888999999999999876655556653 4888888888888999999999999876654444444
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 343 VKEAVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 343 ~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
+.. ...|+..+|.+.+.++|+.|
T Consensus 168 n~~-------~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 168 NRI-------VNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred HHH-------HHHHHHHHhcCcHHHHHHHH
Confidence 432 23577778888888888777
No 290
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.48 E-value=0.29 Score=51.24 Aligned_cols=44 Identities=18% Similarity=0.514 Sum_probs=33.3
Q ss_pred cccCccccCC--C---ceec--CCCcccchhHHHHHHhc-CCCCCCcccccC
Q 015939 15 RCPISLDVMK--S---PVSL--CTGVTYDRSSIQHWLES-GHDTCPATMQIL 58 (398)
Q Consensus 15 ~Cpi~~~~~~--d---Pv~~--~~g~~~~r~~i~~~~~~-~~~~CP~~~~~l 58 (398)
-|+||.-++. | |=-. +|.|.|--.|+-+|+.. |+.+||.||-.+
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 5999988876 1 2222 38899999999999975 566899999543
No 291
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.28 E-value=0.2 Score=54.19 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=38.5
Q ss_pred CCCcccccCccccCC-CceecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939 10 VPNLFRCPISLDVMK-SPVSLCTGVTYDRSSIQHWLESGHDTCPATM 55 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~ 55 (398)
+-..+.|+||+++++ -=.+..|||.||-.|++-|... ...||.|+
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 345678999999999 6667779999999999999975 66799997
No 292
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.20 E-value=29 Score=37.16 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=108.3
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939 101 ENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC 180 (398)
Q Consensus 101 ~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~ 180 (398)
|..+.+|+..+........ ........|.+..++.... .|.+..+.-.++..|..++..-... .+.+ ..++
T Consensus 267 WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~--kDaN~~v~~~aa~~l~~ia~~lr~~--~~~~---~~~v 337 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRL--KDANINVVMLAAQILELIAKKLRPL--FRKY---AKNV 337 (815)
T ss_pred hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHhcchh--hHHH---HHhh
Confidence 6789999999988876533 1222211133333333333 4667777888888888887654432 1222 3467
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCc-chHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYR-SVKAQ 258 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~-~~~~~ 258 (398)
++.+++-+...-..++..+..++..... .....-.++.+...++++ +|..+..+...+-... ..+ .....
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILN-------STPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 7888888877777777766666665544 112244677788889998 8888887666665543 222 22222
Q ss_pred HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
-.-.+.++.++... .+.+.+|+..|..++..+-.
T Consensus 410 ~t~~~l~p~~~~~~--~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHI--NDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhHHHHhHHHhhhc--cCCcHHHHHHHHHHHHHHHH
Confidence 22234677777777 45788888888877776644
No 293
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.06 E-value=14 Score=37.66 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=71.7
Q ss_pred cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHH
Q 015939 190 EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQI 267 (398)
Q Consensus 190 ~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~ 267 (398)
.|+...+.-|+..|.....+ ++.. ..+|..+++|..+. +..++..|++.|..+|.+. +...++ ++.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~------~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQ------EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGH------HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHH
Confidence 46788899999999977766 5543 35788999999998 8999999999999999864 566554 568
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh---ccChhHHHHHHHHHHH
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM---KVGKTAREDAVVVIWS 333 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~---~~~~~~~~~a~~~L~~ 333 (398)
|+++|+. +++.-....-.+|..|-. ++. +.+..+..-+. .+++.+++.++..|..
T Consensus 101 L~QlL~t--dd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 101 LVQLLQT--DDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHTT-----HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHhc--ccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 9999963 444333333333333332 111 12222222232 3566667777766633
No 294
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=0.46 Score=44.52 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=37.0
Q ss_pred cccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.-.|=||..--+|-+++||-|. .|..|-....- ....||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 4579999999999999999996 47788655532 24569999998754
No 295
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.04 E-value=4 Score=33.51 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=60.5
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~ 381 (398)
++..+.+-|..+++.++-.|+.+|..+..+-| .....++...+.+..|+.++.. .....+|++...+++.-++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999887655 6788889999999999999953 2467999999999988777
No 296
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.01 E-value=3.7 Score=33.43 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=58.9
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHH-HHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGI-VRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~-~k~~A~~lL~~l~~ 381 (398)
++..|-+-|..+++.++-.|+.+|..+..+.+ .....++...+.+..|..++....+.. +|+++..+++.-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34456677778999999999999999888755 677788889999999998886654444 99999888888776
No 297
>PF04641 Rtf2: Rtf2 RING-finger
Probab=85.81 E-value=0.65 Score=42.65 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=32.6
Q ss_pred CCCCcccccCccccCCCceecC-CCcccchhHHHHHHh
Q 015939 9 AVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLE 45 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~ 45 (398)
..-.|+.|+|+++.|.+||+.. -|+-|.+..|-+|+-
T Consensus 30 ~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll 67 (260)
T PF04641_consen 30 REARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLL 67 (260)
T ss_pred hhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHH
Confidence 3446889999999999999864 999999999999984
No 298
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.24 E-value=8.4 Score=40.93 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhh-chhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVL-ETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS- 254 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~- 254 (398)
..++|.|++.....+...+..=..+|.++..+ +. ..+. .....+|.|+..|+-+ |..++-.+++++.-+..-..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccc
Confidence 46788888888856677777777888877665 32 3333 3355778888888887 88888888888887653322
Q ss_pred hHHHHHHcCChHHHHHHhcccCcc-hhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 255 VKAQLVELGMVQILTRILSDSRTQ-ILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~~~~-~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
-...=++ -.||.++.+=++.+.. ..+++.|+..|..|.. .|..+-.-. ...++..|...|.+....+++.|+++=
T Consensus 943 L~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 943 LQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 2221122 2567777766532222 4678899999999998 555443333 236778888888888888888888653
No 299
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.53 E-value=5 Score=33.11 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|..-|.++++.++..|..+|..+..+ ......+.. .+++..|++++++..++.++..++..+.+-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 466677777888999999999999999988 346666665 89999999999866578899999999887763
No 300
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=0.65 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCCcccchhHHHHHHhcCCCCCCccccc
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPATMQI 57 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~~ 57 (398)
.|+|.|--.||.+|++. +..||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 49999999999999986 5679998764
No 301
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.32 E-value=35 Score=33.68 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=109.5
Q ss_pred HHHHHHHhhhc-cCCcHHHHHHHHHHHHhhhcccc--hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhh
Q 015939 132 VEAVFGVLNRK-RRSEIAVLESAVRVLNLIVNENG--VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSIS 207 (398)
Q Consensus 132 v~~L~~lL~~~-~~~~~~~~~~al~~L~~l~~~~~--~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~ 207 (398)
.+.+..+|... +....+-.+.|+.-|..+..... ..++... ..+..++++|+. .+...+.-|.++|+.+.
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~------~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA------EILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH------HHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 34444555432 11123334677775555544332 1122223 346788899987 58888999999999888
Q ss_pred cCchhHHHhhch-hhHHHHHHHHhccccCHHHHHHHHHH-HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHH
Q 015939 208 LDNESKRRVLET-ENLLSALFDYLKLAEDQALNDAILSI-LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKS 285 (398)
Q Consensus 208 ~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~a-L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~a 285 (398)
.+...+ +.++ .-+|..+++.-.+. .+++...|... +.-|++..... .|..+..++.. .|....-.+
T Consensus 359 ~~Q~~~--l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt--~D~~~~~~~ 426 (516)
T KOG2956|consen 359 TNQPAR--LFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILT--ADEPRAVAV 426 (516)
T ss_pred HhchHh--hhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhc--CcchHHHHH
Confidence 874332 2221 33455555554454 45555555544 44555555433 23344445532 455555566
Q ss_pred HHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939 286 IKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 286 l~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~ 337 (398)
+..+..|.. ..+.-..++ ....|.+++.-.+.+..+++.|+-+|..|...
T Consensus 427 iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 427 IKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 666666665 334444455 36899999999999999999999999887653
No 302
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.00 E-value=26 Score=36.68 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI 160 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l 160 (398)
+.....|.+.+.= .+..|+-++..+-+.. .++ .|++-+.+-.+|....| +...++|.-.|...
T Consensus 137 p~IracleHrhsY--VRrNAilaifsIyk~~----~~L--~pDapeLi~~fL~~e~D--psCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 137 PSIRACLEHRHSY--VRRNAILAIFSIYKNF----EHL--IPDAPELIESFLLTEQD--PSCKRNAFLMLFTT 199 (948)
T ss_pred HHHHHHHhCcchh--hhhhhheeehhHHhhh----hhh--cCChHHHHHHHHHhccC--chhHHHHHHHHHhc
Confidence 3334445555543 5566665555543221 122 23556666677755333 34557776655543
No 303
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.54 E-value=5.7 Score=32.84 Aligned_cols=71 Identities=10% Similarity=0.247 Sum_probs=59.1
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|..-|.++++.++..|+.+|..+..+ ......+.. ..++..|++++....++.++.-.+..|...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466677777888999999999999999988 356667766 89999999999985588899999999988764
No 304
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=0.93 Score=42.71 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=41.0
Q ss_pred ccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 14 FRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 14 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
+.|.|+++.|.| |++.|.||+|-..+|+.|-....-.||.+++.+....
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 479999999976 9999999999999999997543478999988876543
No 305
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=83.36 E-value=32 Score=31.53 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=103.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939 184 FLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSVYRSVKAQLVE 261 (398)
Q Consensus 184 Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~~~~~~~v~ 261 (398)
|-..|.+++...|.+|...|..+... +... + . ..-+..|+....+. .|......++.+|..|..........+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L-~-~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--L-S-RQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c-c-HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 44567788999999999999876655 4322 1 1 22345555554443 355667777888887764433111110
Q ss_pred cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCC
Q 015939 262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~ 339 (398)
...+..+.+-..-+.-....+..+..+|..|..+. +.-..+. .+.+..+++.+.. .+|+.--.+..++..+.....
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 01222222222111123355667888888876532 3333333 2567777777765 566665555555544422110
Q ss_pred -------------------------Ch------hHHH----HHHh-----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 340 -------------------------DA------RVKE----AVVN-----SNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 340 -------------------------~~------~~~~----~~~~-----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
|+ +.+. .+.. .-++|.|+.-|.++ ++.+|.-+...|..+
T Consensus 157 ~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~-~~~~K~D~L~tL~~c 235 (262)
T PF14500_consen 157 ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDST-SPSVKLDSLQTLKAC 235 (262)
T ss_pred cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence 11 2222 2221 34578888888777 677888777766655
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
..
T Consensus 236 ~~ 237 (262)
T PF14500_consen 236 IE 237 (262)
T ss_pred HH
Confidence 44
No 306
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=82.40 E-value=0.88 Score=41.62 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=34.1
Q ss_pred cccccCcccc----CCCceecCCCcccchhHHHHHHhcCCCCCCcccc
Q 015939 13 LFRCPISLDV----MKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 13 ~~~Cpi~~~~----~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
++-||||.+. +.+|..++|||+-=..|.++....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4559999875 5678899999987777777776666 89999964
No 307
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.62 E-value=66 Score=32.91 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
.|.+..++..+.+.+..+|.+++.+|..++.. .+.-+.+. .|.+..|..-+-+. .+.++..|+.+|..+-....|-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCCh
Confidence 46778888888888999999999999999877 44444443 57777777666665 6779999999999885433221
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~ 299 (398)
... .+..|+.+++ .+++.++++.|+ .|+..++..+
T Consensus 167 en~----~~n~l~~~vq-nDPS~EVRr~al---lni~vdnsT~ 201 (885)
T COG5218 167 ENR----IVNLLKDIVQ-NDPSDEVRRLAL---LNISVDNSTY 201 (885)
T ss_pred HHH----HHHHHHHHHh-cCcHHHHHHHHH---HHeeeCCCcc
Confidence 111 2346777776 456777777665 4554444333
No 308
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.94 E-value=1.2 Score=39.61 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=34.6
Q ss_pred CCcee-cCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 24 KSPVS-LCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 24 ~dPv~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
.||.- +.|+|.||-.|...-. ...||.|+.++....+.+| +-..|..++.
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F~ 65 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYFA 65 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHcc
Confidence 55554 4699999998865443 2389999999777666666 4555555543
No 309
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=80.79 E-value=19 Score=36.19 Aligned_cols=124 Identities=18% Similarity=0.278 Sum_probs=73.1
Q ss_pred hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc-hHHHhhHhhhccCCChHHHHHHHhcC-Chh
Q 015939 117 GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG-VKEKLNRLILNTYNCLPLFLEILREG-NLD 194 (398)
Q Consensus 117 ~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~-~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~ 194 (398)
...+.-.++...+++++.+++-++. + .+.+--++++. .+.. ........ +.+.+.|+.|+++|+.. +.+
T Consensus 8 k~~e~l~Fik~~~~~v~~llkHI~~-~----~ImDlLLklIs---~d~~~~~~~ilew-L~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 8 KTEEMLEFIKSQPNFVDNLLKHIDT-P----AIMDLLLKLIS---TDKPESPTGILEW-LAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred CHHHHHHHHHhCccHHHHHHHhcCC-c----HHHHHHHHHHc---cCcccchHHHHHH-HHHhCHHHHHHHHhCCCCCHH
Confidence 3345566777777888777777765 1 12233333332 2221 11112222 55889999999999854 889
Q ss_pred hHHHHHHHHHHhhcCc--------------hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 195 SKIGSIKILDSISLDN--------------ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 195 ~~~~a~~~L~~L~~~~--------------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
.+.+|+.+|..|..-. .....+.. ...+..|++.+-..........++.++..|-
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 9999999988774321 22333444 5667777765543112446666677766664
No 310
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.55 E-value=15 Score=40.22 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=104.0
Q ss_pred ChHHHHHHHh----cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch
Q 015939 180 CLPLFLEILR----EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV 255 (398)
Q Consensus 180 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 255 (398)
..|.+++..+ .++++++..|..+|..+..-. ..+. ..-++.|+..+...++|-++.++..++..|+...+|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fc--es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFC--ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHH--HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 5566666664 347899999999999776542 1222 234789999998655899999999999999876665
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
- ++. --+.|...|. +.++.+++.|+.+|.+|-.+ .++..-|.+..+...+.+++...+.-|=.....|+
T Consensus 995 l---ie~-~T~~Ly~rL~--D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 L---IEP-WTEHLYRRLR--DESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c---cch-hhHHHHHHhc--CccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 2 222 2355667774 57899999999999999763 33334588999999999999988888876665555
Q ss_pred cc
Q 015939 336 CV 337 (398)
Q Consensus 336 ~~ 337 (398)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 53
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=80.14 E-value=48 Score=30.41 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=86.8
Q ss_pred hhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH----HHhhHhhhccCCChHHHHHHHhcCC----hhhHH
Q 015939 126 ASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK----EKLNRLILNTYNCLPLFLEILREGN----LDSKI 197 (398)
Q Consensus 126 ~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~----~~~~~~il~~~g~i~~Lv~lL~~~~----~~~~~ 197 (398)
...+|..+.++.=|.+ +. ..+.++..|..+....++. .++|-. +.--+.+|.++.-++.++ .+...
T Consensus 60 ~~f~Glq~Ll~KGL~S-s~----t~e~tl~lL~~L~~~~~~~lig~~~~rll-~~~la~LP~ll~~~d~~~~i~~~~~~~ 133 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRS-SS----TYELTLRLLSRLTPLPDDPLIGDSQSRLL-FLLLALLPRLLHAFDDPNPIQPDQECI 133 (262)
T ss_pred CCchhHHHHHhCccCC-CC----cHHHHHHHHHHHhcCCCccccCCCCccHH-HHHHHHHHHHHHHhcccccccccHHHH
Confidence 3343444444444444 22 3377788888777654421 001111 112234566666666665 12334
Q ss_pred HHHHHHHHhhcCc-----------------------------hhHHHhh-c-hhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 198 GSIKILDSISLDN-----------------------------ESKRRVL-E-TENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 198 ~a~~~L~~L~~~~-----------------------------~~~~~i~-~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
..|..|..++... ..+.... + ....+..|+.+|.++ .+..+...+..|
T Consensus 134 ~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL 212 (262)
T PF14225_consen 134 EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG-PPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 5667777766542 1111111 0 124556677778777 667888899999
Q ss_pred HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939 247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA 293 (398)
Q Consensus 247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La 293 (398)
+.+-..-+.+.. ...+.+.++.++|+ .+....|+.+|.+.-
T Consensus 213 ~~ll~~~d~~~~-~~~dlispllrlL~-----t~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 213 KVLLPHVDMRSP-HGADLISPLLRLLQ-----TDLWMEALEVLDEIV 253 (262)
T ss_pred HHHhccccCCCC-cchHHHHHHHHHhC-----CccHHHHHHHHHHHH
Confidence 988665554433 45557888999985 355667887777653
No 312
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.66 E-value=11 Score=30.70 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=57.3
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhcc--ccCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKL--AEDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|-.-|.++++.++..|..+|..+..+ +.....+.. ..++..|++++.. ..+++++..++..+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777778888999999999999999988 336666665 6788889999986 3578899999999888764
No 313
>PF14353 CpXC: CpXC protein
Probab=79.32 E-value=1.1 Score=36.30 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcC--CCCCCcccccCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG--HDTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~ 59 (398)
+++||-|+..|.=.|-..-.-.-.....++-++.. ..+||.|++.+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46899999999888876655456777777777532 347999998754
No 314
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.99 E-value=1.4 Score=45.58 Aligned_cols=51 Identities=6% Similarity=-0.102 Sum_probs=38.3
Q ss_pred cccCCCCcccccCccccCCCce----ecC---CCcccchhHHHHHHhc--C---CCCCCcccc
Q 015939 6 LYIAVPNLFRCPISLDVMKSPV----SLC---TGVTYDRSSIQHWLES--G---HDTCPATMQ 56 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv----~~~---~g~~~~r~~i~~~~~~--~---~~~CP~~~~ 56 (398)
..++.++.-+|++|..-+.+|| +.+ |+|.||..||..|.++ + ...|++|..
T Consensus 89 ~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 89 VDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 3456667889999999999954 233 8999999999999864 1 345777743
No 315
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=78.98 E-value=1.1 Score=30.16 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=21.5
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhc-CCCCCCcccc
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-GHDTCPATMQ 56 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~CP~~~~ 56 (398)
+.|.||.|++.+... .+.+-+......+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 468999988733221 2333344444432 2356999975
No 316
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=78.89 E-value=0.25 Score=34.96 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=23.2
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
+..||.|.+.| ....|+.+|..|-.++.. ...||.|+++|+
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee--cccCCCcccHHH
Confidence 46799998864 444589999999655432 357999998875
No 317
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=78.78 E-value=81 Score=32.21 Aligned_cols=112 Identities=12% Similarity=0.210 Sum_probs=75.8
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN 210 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 210 (398)
....++++|++ .++. .+.+....++.+|+.+-+. +..+ ..+..+|.|.+-|+..+..+...|+..+..|+..-
T Consensus 598 lm~Lf~r~les-~~~t-~~~~dV~~aIsal~~sl~e--~Fe~---y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 598 LMELFIRILES-TKPT-TAFGDVYTAISALSTSLEE--RFEQ---YASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred HHHHHHHHHhc-cCCc-hhhhHHHHHHHHHHHHHHH--HHHH---HHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 45666777777 3322 3346777778777764433 1112 24578999999998888889999999999998774
Q ss_pred hhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhc
Q 015939 211 ESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLS 250 (398)
Q Consensus 211 ~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls 250 (398)
+....+-. .-....|+..|+++ .+-+++-+.+.+...++
T Consensus 671 ~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 671 GTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred hhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 44444444 56788999999986 33445666666666554
No 318
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.74 E-value=72 Score=31.62 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHH-HhhcCchh-HHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHH
Q 015939 192 NLDSKIGSIKILD-SISLDNES-KRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILT 269 (398)
Q Consensus 192 ~~~~~~~a~~~L~-~L~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv 269 (398)
..+-+..|..-|. .++.+... ..+.. ...+..++..|++..+...++-|++.|..++.++..+-.=..+-+|..++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 3445555665444 44444222 22222 34677888999985488889999999999988776543322333566666
Q ss_pred HHhcccCcchhhHHHHHHH-HHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHH
Q 015939 270 RILSDSRTQILTVEKSIKM-LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVV 348 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~-L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 348 (398)
+.-. +.++++...|... +.-++.+. .-+ .|..+..++...+...--.++..+..|+..- .++++.
T Consensus 378 eaa~--ds~~~v~~~Aeed~~~~las~~-P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l----~~EeL~ 443 (516)
T KOG2956|consen 378 EAAK--DSQDEVMRVAEEDCLTTLASHL-PLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL----SAEELL 443 (516)
T ss_pred HHHh--CCchhHHHHHHHHHHHHHHhhC-chh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc----CHHHHH
Confidence 6653 3455555544443 33344321 111 2223344444445444445555566666421 122221
Q ss_pred --hcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939 349 --NSNGLTKLLLVMQSENEGIVRKMCGDLV 376 (398)
Q Consensus 349 --~~g~~~~Ll~~l~~~~~~~~k~~A~~lL 376 (398)
-..+.|.+++.-++. +..+|+.|.-+|
T Consensus 444 ~ll~diaP~~iqay~S~-SS~VRKtaVfCL 472 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDST-SSTVRKTAVFCL 472 (516)
T ss_pred HhhhhhhhHHHHHhcCc-hHHhhhhHHHhH
Confidence 245677777777766 677777776544
No 319
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.71 E-value=10 Score=30.86 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=55.5
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCH-HHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQ-ALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~a~~aL~~Ls~ 251 (398)
++..|-.-|.++++.++..|..+|..+..+ ......+.. .+++..|+++++...+. .++..++..+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466677777888999999999999999988 456666665 88999999999886333 378888888777653
No 320
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=78.43 E-value=1.5 Score=41.86 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=27.7
Q ss_pred ceecCCCcccch-----hHHHHHHhc------------CCCCCCcccccCCCCCC
Q 015939 26 PVSLCTGVTYDR-----SSIQHWLES------------GHDTCPATMQILSTKEF 63 (398)
Q Consensus 26 Pv~~~~g~~~~r-----~~i~~~~~~------------~~~~CP~~~~~l~~~~l 63 (398)
|..-+|+..||| +|+.+||.. |+-.||.||..|+-.|+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 444568888875 799999842 34579999999876553
No 321
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.23 E-value=2.3 Score=40.77 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=38.4
Q ss_pred cccccCccccCC---CceecCCCcccchhHHHHHHh----cCC---CCCCcccccCCCCCCcccHHHHHHHH
Q 015939 13 LFRCPISLDVMK---SPVSLCTGVTYDRSSIQHWLE----SGH---DTCPATMQILSTKEFVPNLTLHRLIA 74 (398)
Q Consensus 13 ~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~----~~~---~~CP~~~~~l~~~~l~~n~~l~~~i~ 74 (398)
-|-|-||-+... +-+-+||+|.||++|...++. +|. ..||.++.+ ....++ .+++++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~---~~a~~g-~vKelvg 251 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG---SVAPPG-QVKELVG 251 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc---ccCCch-HHHHHHH
Confidence 467888887663 467789999999999999974 233 347776543 333333 3555543
No 322
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=77.83 E-value=0.85 Score=35.41 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=29.1
Q ss_pred cccCCCCcccccCccccCCCcee--cCCCcccchhHHH
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVS--LCTGVTYDRSSIQ 41 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~--~~~g~~~~r~~i~ 41 (398)
....+.++-.|++|++.+.+++. .||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44567777889999999987765 5899999998875
No 323
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=17 Score=33.95 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=86.4
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
+...+..|++.+.+.+..+...|+.|+.. .+...... +..|-.+++-+++. .-.+-++|+.++..+-..-.+...-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777888888888888888765 33322222 45777888888888 4568888899988886543332221
Q ss_pred HHcCChHHHHHHhc-c-cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 260 VELGMVQILTRILS-D-SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 260 v~~g~v~~Lv~lL~-~-~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
..+.++..|. . ..+..-+++.|..+|..+..+-.-. -+++.|+..+...++.++..++.+.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccc
Confidence 2334444332 1 1234457888988888887632221 2344566667778888887776444
No 324
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.52 E-value=30 Score=34.39 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=91.7
Q ss_pred hhHHHHHHHHhc----cccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 220 ENLLSALFDYLK----LAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 220 ~g~i~~Lv~lL~----~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
.|.+.-++-.|. ++ +...+..|++.|.+.... ++-+...... .+..++.-|.+ +.+.+|+-.++.+|..+..
T Consensus 253 ~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D-~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYD-DLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhc-CCccHHHHHHHHHHHHHHH
Confidence 344444444433 33 567888999999999876 5555555443 55666666653 3457888888888887766
Q ss_pred CHHHHH--HHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh--cCCHHHHHHHHhhcCcHHHHH
Q 015939 295 CSEGRL--ALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN--SNGLTKLLLVMQSENEGIVRK 370 (398)
Q Consensus 295 ~~~~~~--~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~g~~~~Ll~~l~~~~~~~~k~ 370 (398)
.-++.. .+.. .+.-.+..+..+.+++.+-.|...+..|+...+ ..+.....+ -+.+..++..++.. ++.+-.
T Consensus 330 ~~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g-~~~e~~Fte~v~k~~~~lllhl~d~-~p~va~ 405 (533)
T KOG2032|consen 330 KASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG-GGWEEFFTEQVKKRLAPLLLHLQDP-NPYVAR 405 (533)
T ss_pred hhhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC-CCchhhhHHHHHhccccceeeeCCC-ChHHHH
Confidence 433332 1111 234455666677899999999888887776543 222222221 22233566666655 566655
Q ss_pred HHHHHHHHHhc
Q 015939 371 MCGDLVKVLGK 381 (398)
Q Consensus 371 ~A~~lL~~l~~ 381 (398)
.+...++.+..
T Consensus 406 ACr~~~~~c~p 416 (533)
T KOG2032|consen 406 ACRSELRTCYP 416 (533)
T ss_pred HHHHHHHhcCc
Confidence 55556665544
No 325
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=77.51 E-value=2.4 Score=39.52 Aligned_cols=61 Identities=15% Similarity=0.350 Sum_probs=44.8
Q ss_pred CCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 10 VPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
..+-+-||+|.+.|.-|+-=. .||.-|-+|=.+- ...||.|+.++.+ +.+.++.+.++...
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAVL 106 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhce
Confidence 445678999999999997654 7999999985432 4469999988762 36666666665543
No 326
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=77.19 E-value=90 Score=31.91 Aligned_cols=32 Identities=9% Similarity=0.319 Sum_probs=27.0
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCc
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDN 210 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~ 210 (398)
..+..|-.+|++.....|-.|.++|..|+...
T Consensus 303 ~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 303 QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 45777788888889999999999999998864
No 327
>PLN02189 cellulose synthase
Probab=77.14 E-value=1.7 Score=46.81 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=36.5
Q ss_pred cccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|.||++- .-+|.+- .||.-.||.|.+-=.++|+..||+|+...+
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 89999985 4466654 388889999997777788999999998765
No 328
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=76.71 E-value=0.79 Score=40.34 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=36.1
Q ss_pred CcccccCcc-ccCCCce----ecC-CCcccchhHHHHHHhcCCCCCC--cccccCC
Q 015939 12 NLFRCPISL-DVMKSPV----SLC-TGVTYDRSSIQHWLESGHDTCP--ATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~-~~~~dPv----~~~-~g~~~~r~~i~~~~~~~~~~CP--~~~~~l~ 59 (398)
.+-.||+|. +.+-+|= +.| |=|..|-+|..+.|..|...|| -|+.-|.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 356799997 3444552 234 9999999999999998888999 6765444
No 329
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.53 E-value=13 Score=30.45 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=55.7
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhcc-----ccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKL-----AEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls 250 (398)
++..+..-|.++++.++..|..+|..+..+ ......+.. .+++..|++++.. ..++.++...+..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466677778888999999999999999988 456777776 7899999999963 136788888888877664
No 330
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.16 E-value=27 Score=29.46 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcC--ChHHHHHHhcccCcchhhHHHHHHHHHHHhC---
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELG--MVQILTRILSDSRTQILTVEKSIKMLSIVAT--- 294 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g--~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--- 294 (398)
...+..+..+|+++ ++..+..++..+..++...+ ...+.+.| -+..|+.+|+. ++.+.+.+.++.+|..|..
T Consensus 24 ~~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 24 HKLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 45677788899888 78888888888888776542 23333322 46778888874 4566788888888888764
Q ss_pred -CHHHHHHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccC
Q 015939 295 -CSEGRLALSEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 295 -~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~ 338 (398)
.++-.+++. . .-++.++..+-. .+....+.++.+|..+-...
T Consensus 101 ~~p~l~Rei~-t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 101 GKPTLTREIA-T-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred CCCchHHHHh-h-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence 445444443 2 224444444333 12566777777777766543
No 331
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.57 E-value=1.8 Score=42.15 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=30.3
Q ss_pred cccccCcc-ccCCC---ceecCCCcccchhHHHHHHhc-----CCCCCCccccc
Q 015939 13 LFRCPISL-DVMKS---PVSLCTGVTYDRSSIQHWLES-----GHDTCPATMQI 57 (398)
Q Consensus 13 ~~~Cpi~~-~~~~d---Pv~~~~g~~~~r~~i~~~~~~-----~~~~CP~~~~~ 57 (398)
...|+||. +.+.. ..+..|||.||..|..+++.. ....||.-+-+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~ 199 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCE 199 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCC
Confidence 45799999 33222 125669999999999999852 23467764433
No 332
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.27 E-value=42 Score=36.91 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc---C
Q 015939 103 SCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT---Y 178 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~---~ 178 (398)
.+...+..|..+....+ .+..++.+. +.+.++.. +. . +....+.|..+|..+..-.. ... ..+ .
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~-Ke-~--n~~aR~~Af~lL~~i~~i~~-----~~d-~g~e~~~ 780 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSL-KE-V--NVKARRNAFALLVFIGAIQS-----SLD-DGNEPAS 780 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhc-cc-c--cHHHHhhHHHHHHHHHHHHh-----hhc-ccccchH
Confidence 55666666666655444 344444432 33333333 44 2 33455888888888873100 000 111 1
Q ss_pred CChHHHHHHHhcC--ChhhHHHHHH--HHHHhhcCchhHHHhhc--hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-
Q 015939 179 NCLPLFLEILREG--NLDSKIGSIK--ILDSISLDNESKRRVLE--TENLLSALFDYLKLAEDQALNDAILSILITLSV- 251 (398)
Q Consensus 179 g~i~~Lv~lL~~~--~~~~~~~a~~--~L~~L~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~- 251 (398)
..|...+..+..| ..+.+..+.. ++..+.. +.+..+.. ..+.+..+..+|.+. +++..++|+..+.-++.
T Consensus 781 ~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 781 AILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--EFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHc
Confidence 2577777778777 4444444443 2333333 23333221 245666667777777 89999999999999874
Q ss_pred CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHh
Q 015939 252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALS 303 (398)
Q Consensus 252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~ 303 (398)
.++.+..--..-.++.+..++. +....++.+.-..|..|.. +.+..+.+.
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls~--d~k~~~r~Kvr~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALSH--DHKIKVRKKVRLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhCHHHHHhhC
Confidence 5555554444447888888774 3466777777777777765 334444444
No 333
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.12 E-value=11 Score=38.91 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=73.7
Q ss_pred ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhH
Q 015939 264 MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARV 343 (398)
Q Consensus 264 ~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 343 (398)
.+..+++-. .+.+..|+..++.+|..|......+..-+- .+....+..-+.+..+.++..|+-+|..+-...++++
T Consensus 86 ~f~hlLRg~--Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 86 TFYHLLRGT--ESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHhcc--cCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 444455544 346778999999999999986555555552 3777788888888999999999999977764333333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCcHHHHHHHH
Q 015939 344 KEAVVNSNGLTKLLLVMQSENEGIVRKMCG 373 (398)
Q Consensus 344 ~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~ 373 (398)
..++..++.++|.+.++++|+.|.
T Consensus 162 ------~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 162 ------CPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred ------ccHHHHHHHHHhcCCcHHHHHHHH
Confidence 235667888899999999998873
No 334
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.08 E-value=13 Score=30.39 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=55.2
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHH---HHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQA---LNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~---~~~~a~~aL~~Ls 250 (398)
++..|..-|.++++.++..|+.+|..+..+ +.....+.. ..++..|.+++.+..... +++.++..|...+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 466666777889999999999999999988 467777777 789999999998763433 7788887777664
No 335
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=74.95 E-value=24 Score=30.46 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhhcCchhHHHhh-------c----hhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcCCcchHHHHHH-
Q 015939 195 SKIGSIKILDSISLDNESKRRVL-------E----TENLLSALFD-YLKLAEDQALNDAILSILITLSVYRSVKAQLVE- 261 (398)
Q Consensus 195 ~~~~a~~~L~~L~~~~~~~~~i~-------~----~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~- 261 (398)
+|..|..+|..++..-+.|...+ + ..+.-+.|+. ++.++ +++++.+|+.+|..|-.+...--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 56778888888877632222211 1 0123334444 45555 899999999999998544322222222
Q ss_pred cC-------------------ChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHH--HhhccCcHHHHHHHHhcc
Q 015939 262 LG-------------------MVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLA--LSEEASCAGRVVERVMKV 319 (398)
Q Consensus 262 ~g-------------------~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~--i~~~~g~v~~Lv~~l~~~ 319 (398)
.. .-..|+..|+ ...+..+....+++|..|.. .|-.|-. +. ...+..+-.++...
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~-~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQ-AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHHHhcC
Confidence 11 1233555665 24567777888888888876 4444432 22 12344444445558
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 015939 320 GKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 320 ~~~~~~~a~~~L~~l~~~ 337 (398)
+..++..++.++..+...
T Consensus 158 d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 888999999888887653
No 336
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=74.35 E-value=87 Score=33.71 Aligned_cols=140 Identities=10% Similarity=0.049 Sum_probs=84.6
Q ss_pred HHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCC
Q 015939 186 EILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGM 264 (398)
Q Consensus 186 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~ 264 (398)
.-+.+.++.-|..|+.-+.....+.. +...-...|.+..+++....+.+..+...++..|-.++..- ..... ...+.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v 337 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNV 337 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhh
Confidence 33345566667777777765555533 23332335666667766555557888888888888887432 33222 23457
Q ss_pred hHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 265 VQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 265 v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
.+.++.-+. ...+.+.+.++.++...+.... -.-..+.+..++..+++..+......+.....
T Consensus 338 ~p~lld~lk--ekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 338 FPSLLDRLK--EKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred cchHHHHhh--hccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 788888884 3567777777777777665100 11234456666777777777776666655443
No 337
>PLN02195 cellulose synthase A
Probab=73.95 E-value=2.8 Score=45.03 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=37.3
Q ss_pred cccCccc-----cCCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLD-----VMKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~-----~~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|-||++ .+-+|.+- .||.-.||.|.+-=.++|+..||+|+...+
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5899988 56677765 489899999996667789999999998877
No 338
>PHA02862 5L protein; Provisional
Probab=73.19 E-value=3.3 Score=33.69 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=31.4
Q ss_pred cccCccccCCCceecCCCcc-----cchhHHHHHHhc-CCCCCCcccccCCC
Q 015939 15 RCPISLDVMKSPVSLCTGVT-----YDRSSIQHWLES-GHDTCPATMQILST 60 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~-----~~r~~i~~~~~~-~~~~CP~~~~~l~~ 60 (398)
.|=||.+-=.+. .-||+-+ .=++|+++|+.. +..+||.|+.+..-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 477888875544 4676421 228999999963 46789999987653
No 339
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.17 E-value=1.5e+02 Score=32.77 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=65.5
Q ss_pred chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc---cChhHHHHHHH
Q 015939 254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK---VGKTAREDAVV 329 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~---~~~~~~~~a~~ 329 (398)
..++++..+|++..|++.+- ...++++-.-+..|..++. ++.+..-.. ..|+++.|++++.. ++...-.+|..
T Consensus 899 pdk~~iynagavRvlirslL--lnypK~qlefl~lleSlaRaspfnaellt-S~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLL--LNYPKLQLEFLNLLESLARASPFNAELLT-SAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred chHhhhcccchhHHHHHHHH--hhChHHHHHHHHHHHHHhhcCCCchhhhh-cccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 46778899999999999884 3689999999999999988 556665555 67999999988753 67777888888
Q ss_pred HHHHhhcc
Q 015939 330 VIWSMCCV 337 (398)
Q Consensus 330 ~L~~l~~~ 337 (398)
++..|+..
T Consensus 976 IvemLgay 983 (2799)
T KOG1788|consen 976 IVEMLGAY 983 (2799)
T ss_pred HHHHHhhc
Confidence 88887754
No 340
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.90 E-value=3.3 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.0
Q ss_pred CcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHH
Q 015939 32 GVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLH 70 (398)
Q Consensus 32 g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~ 70 (398)
-+|||..|-+.-+. ..||-|+-.|.-.+.+|-..|.
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHHh
Confidence 45999999998764 3799999888877777765443
No 341
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=72.64 E-value=1.5 Score=36.25 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=20.6
Q ss_pred CcccccCccccCCCceecCCCcccch
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDR 37 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r 37 (398)
++.+||||.+.-.+-|+|-|. +|++
T Consensus 1 ed~~CpICme~PHNAVLLlCS-S~~k 25 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS-SHEK 25 (162)
T ss_pred CCccCceeccCCCceEEEEec-cccC
Confidence 478999999999999999865 4553
No 342
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.49 E-value=24 Score=36.67 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=91.6
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
..++|.|...++..+..+|+.++..+..++..-+ ...+. .-++|.|-.+-....+..++.+++-++..+..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk-~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------ 458 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVK-QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------ 458 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHH-HHHHHHhhcchhcccchHHHHHHHHHHHHHHH------
Confidence 4567888888888899999999999988887633 23333 45677777664444478889999999998882
Q ss_pred HHHHcCChHHHHHHhcc-cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 258 QLVELGMVQILTRILSD-SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~-~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
.+-..-+++.+.-++.. ...++.++...+.+..++.....+...++ +..++|.++-+...+.-...+
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~-~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM-AENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee-hhhhhhhhhhhhhcccccHHH
Confidence 12223344444444432 24688899888888888877444334444 347888888877766533333
No 343
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.37 E-value=71 Score=33.42 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCcc---h---HHHHH-H-----cCC----hHHHHHHhcccCcchhhH
Q 015939 220 ENLLSALFDYLKLA-EDQALNDAILSILITLSVYRS---V---KAQLV-E-----LGM----VQILTRILSDSRTQILTV 282 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~~---~---~~~~v-~-----~g~----v~~Lv~lL~~~~~~~~~~ 282 (398)
.|.+..|+..+.+. ..+...+.-...|.+++.+.. . ...++ . .|. ...++++|. +++--++
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLd--ses~tlR 316 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLD--SESFTLR 316 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhc--ccchhHH
Confidence 46666677776654 345666777777887764321 1 11111 1 121 345677784 3444444
Q ss_pred HHHHHHHHHHhCCHHHHHHHhhc-----cCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC-ChhHHHHHHhcCCHHHH
Q 015939 283 EKSIKMLSIVATCSEGRLALSEE-----ASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK-DARVKEAVVNSNGLTKL 356 (398)
Q Consensus 283 ~~al~~L~~La~~~~~~~~i~~~-----~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~g~~~~L 356 (398)
-.-+.++.|+..+-....+++++ +..+..+++-+.+.++-++..|+.++..++.-+. ...-+.+ ++...
T Consensus 317 c~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv 391 (1128)
T COG5098 317 CCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLV 391 (1128)
T ss_pred HHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHH
Confidence 44455555554322111122211 1355666666677899999999999999886531 1223333 33445
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHH
Q 015939 357 LLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 357 l~~l~~~~~~~~k~~A~~lL~~l 379 (398)
...+|.. +..+|++|.+++..|
T Consensus 392 ~r~lqDr-ss~VRrnaikl~SkL 413 (1128)
T COG5098 392 GRRLQDR-SSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHH
Confidence 5566655 788999997765443
No 344
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=72.32 E-value=39 Score=36.06 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=83.2
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEG 298 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~ 298 (398)
......+...+..+ ++......+.++.++..-.....+- ...-.+.-..-. ...-..+......+|..++. .++.
T Consensus 440 ~~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~--N~~~~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 440 PNLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQF--NKSLGQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHH--HHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34566666666655 7778888888888886533211100 111111111111 11233566678888899988 7788
Q ss_pred HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh
Q 015939 299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 349 (398)
...+..+.++...++.++-++++...+.|..+|.......+-.+....+.+
T Consensus 516 L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 516 LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 888887889999999999999999999999999998865433345555554
No 345
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=72.13 E-value=1e+02 Score=30.14 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=104.9
Q ss_pred hHHHHHHHhcCC-hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc--cc-------cCHHHHHHHHHHHHHhc
Q 015939 181 LPLFLEILREGN-LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK--LA-------EDQALNDAILSILITLS 250 (398)
Q Consensus 181 i~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~--~~-------~~~~~~~~a~~aL~~Ls 250 (398)
-..++++|..+- ..-+..+..+++.|+.+.+.-..+.. ...+..|+.+-+ .. .+..+...++++|+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 456788888884 56667888999999998766666555 455666666533 11 24568889999999998
Q ss_pred CCcc-hHHHHHHcCChHHHHHHhccc---CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc----cC-
Q 015939 251 VYRS-VKAQLVELGMVQILTRILSDS---RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK----VG- 320 (398)
Q Consensus 251 ~~~~-~~~~~v~~g~v~~Lv~lL~~~---~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~----~~- 320 (398)
.+.. .+....+......+++.+... +--..+.-.-+..|.-|.. ....|.++....++++.+-+++.+ .+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 7665 555556777777777666421 1112345566777777655 567888887678999999999976 11
Q ss_pred ----h---hHH---HHHHHHHHHhhccC
Q 015939 321 ----K---TAR---EDAVVVIWSMCCVY 338 (398)
Q Consensus 321 ----~---~~~---~~a~~~L~~l~~~~ 338 (398)
+ ... -.++.++.|++..+
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 222 25566667777664
No 346
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.80 E-value=41 Score=33.68 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939 187 ILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMV 265 (398)
Q Consensus 187 lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v 265 (398)
++... +.++|..+...|..+....+....... . .+.+.+.....++....-+.+|..|+.+..+. ...+.+..
T Consensus 36 Li~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~ 109 (464)
T PF11864_consen 36 LIDPNQPSEARRAALELLIACIKRQDSSSGLMR-A----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIG 109 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-H----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchH
Confidence 33433 667888888888888877554322222 1 22333344435556677788888888766655 33677788
Q ss_pred HHHHHHhc
Q 015939 266 QILTRILS 273 (398)
Q Consensus 266 ~~Lv~lL~ 273 (398)
+.|..-|.
T Consensus 110 ~~L~~wl~ 117 (464)
T PF11864_consen 110 PFLLSWLE 117 (464)
T ss_pred HHHHHHHH
Confidence 88887773
No 347
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=71.77 E-value=1.5e+02 Score=31.80 Aligned_cols=261 Identities=14% Similarity=0.104 Sum_probs=128.8
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..++..++..+.. .+..+...+..++.-....+. .. -.+|.+-..+ . ...++...+..-+..+......
T Consensus 84 ia~l~~e~~~~di~--~r~~~~~~l~~~a~~~~~~~t---r~-~lipf~~e~~-~---~~dev~~~~a~~~~~~~~~v~~ 153 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQ--LRLNSGRKLSNLALALGVERT---RL-ELIPFLTEAE-D---DEDEVLLDLAEQLGTFLPDVGG 153 (759)
T ss_pred HHHHhhccCchhhh--hhhhhhccccchhhhcccchh---hh-hhhhHHHHhc-c---chhHHHHHHHHHhcccchhccc
Confidence 34444444444432 334444444444432222222 12 3345554444 2 2234556666666665544333
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
+.. ..-.++.+-.+.......++++++..|...+.. +.... . .- +-+|+..|....-...+..++..
T Consensus 154 ----~~~---~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--~--~~-lv~l~~~l~~~d~~~sr~sacgl 221 (759)
T KOG0211|consen 154 ----PEY---AHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL--R--EH-LVPLLKRLATGDWFQSRLSACGL 221 (759)
T ss_pred ----hhH---HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--H--HH-HHHHHHHccchhhhhcchhhhhh
Confidence 111 122344444444444556677777777766654 22222 1 11 22333333333112233444455
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
.......-+. ..++...-+..-++-+ +..+.+...+..=+.+++..-.. +.. ..+.++.++++..+..+.+++
T Consensus 222 f~~~~~~~~~--~~vk~elr~~~~~lc~--d~~~~Vr~~~a~~l~~~a~~~~~--~~~-~s~v~~~~~~L~~DdqdsVr~ 294 (759)
T KOG0211|consen 222 FGKLYVSLPD--DAVKRELRPIVQSLCQ--DDTPMVRRAVASNLGNIAKVLES--EIV-KSEVLPTLIQLLRDDQDSVRE 294 (759)
T ss_pred hHHhccCCCh--HHHHHHHHHHHHhhcc--ccchhhHHHHHhhhHHHHHHHHH--HHH-HhhccHHHhhhhhcchhhHHH
Confidence 5544432221 1222223333344442 35666666667667777663333 444 348888999988888899999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.|+..+..+.....++. =...-..+.++...+.+ +.+.+.+......-+.+
T Consensus 295 ~a~~~~~~l~~l~~~~~----d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 295 AAVESLVSLLDLLDDDD----DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSS 345 (759)
T ss_pred HHHHHHHHHHHhcCCch----hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHH
Confidence 99988888776543331 11223455565555544 66666666554444433
No 348
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=71.75 E-value=1.4e+02 Score=31.66 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=66.3
Q ss_pred HHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHH--HHHHHHhccCh
Q 015939 245 ILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAG--RVVERVMKVGK 321 (398)
Q Consensus 245 aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~--~Lv~~l~~~~~ 321 (398)
+|+++.. +.+++..+.+.|++..+.+.+... ...++...++++|.+++...+.+...... -.+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhcch
Confidence 8889885 567999999999999999999754 68889999999999999866554433211 1111 22223344444
Q ss_pred -hHHHHHHHHHHHhhcc
Q 015939 322 -TAREDAVVVIWSMCCV 337 (398)
Q Consensus 322 -~~~~~a~~~L~~l~~~ 337 (398)
+..-+|+.+|+.+...
T Consensus 572 ~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 572 IERSYNAASILALLLSD 588 (699)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 6777888888888765
No 349
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=71.54 E-value=9.7 Score=29.64 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhh
Q 015939 237 ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILT 281 (398)
Q Consensus 237 ~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~ 281 (398)
-.....+..|..|+..++--..+++.|+++.|+++|.+ .+..+
T Consensus 61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H--eN~DI 103 (108)
T PF08216_consen 61 VDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH--ENTDI 103 (108)
T ss_pred HHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC--CCcce
Confidence 34667788899999999998999999999999999964 44444
No 350
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.42 E-value=67 Score=33.75 Aligned_cols=143 Identities=11% Similarity=0.021 Sum_probs=81.7
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~ 299 (398)
.++|..|+.+--++.+.+++++|.-+|.-++..+.. ..+..+++|+. +-++-|+--+..+|.--|.....+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCCcH
Confidence 456777777633333778899998888877654433 35677788863 446778877888888777755555
Q ss_pred HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
.++- .+.+ ++.+...-+++-|+-++..+..... +.....+ .|...++..++...-.+..-+--+.+-+-+
T Consensus 624 eAi~----lLep---l~~D~~~fVRQgAlIa~amIm~Q~t-~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 624 EAIN----LLEP---LTSDPVDFVRQGALIALAMIMIQQT-EQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAILAQGI 693 (929)
T ss_pred HHHH----HHhh---hhcChHHHHHHHHHHHHHHHHHhcc-cccCchH--HHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence 5543 1222 2334556677888777777654421 2322221 233445555554332333333334444555
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
.+
T Consensus 694 ld 695 (929)
T KOG2062|consen 694 LD 695 (929)
T ss_pred hh
Confidence 55
No 351
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=71.28 E-value=21 Score=27.96 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=52.5
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHH-----HhhcCcHHHHHHHHHHHHHHh
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLV-----MQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~-----l~~~~~~~~k~~A~~lL~~l~ 380 (398)
++..|.+-|...++.++-.|+.+|..+..+.+ +.....+.....+..++.. ....-+..+|+++..+++..+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g-~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCG-ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 34456666777899999999999999998754 6777778777776666543 111225789999988887654
No 352
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.28 E-value=19 Score=27.25 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS 254 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 254 (398)
+...+..|++..+.+|.++...|+.|....+ ..+....+++..+...|++. ++=+--+|...|..|+....
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHCh
Confidence 4455667777888999999999999988765 22223367888888889888 66688888999888875443
No 353
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=71.18 E-value=4.9 Score=33.43 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=33.5
Q ss_pred CcccccCccccCCCceecCCCcc-----cchhHHHHHHhc-CCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVT-----YDRSSIQHWLES-GHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~-----~~r~~i~~~~~~-~~~~CP~~~~~l~ 59 (398)
.+-.|=||.+--. +...||.-+ .=++|+++|++. +...||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456889988854 555676521 248899999964 4678999998765
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.13 E-value=2.3 Score=44.49 Aligned_cols=38 Identities=18% Similarity=0.534 Sum_probs=33.5
Q ss_pred cccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccc
Q 015939 15 RCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
.|..|.-.+.=|++- .|||.|-+.|.+ .+...||.|+.
T Consensus 842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 899999999999985 699999999998 45678999964
No 355
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.02 E-value=1.2e+02 Score=31.12 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCChHHHHHH-HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939 178 YNCLPLFLEI-LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 178 ~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
.|++..|+.. .+.++.++|..|+.+|..++..+ ...+...+.+|+...++-++...+-+|.-.|.+.-.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 4556666655 45567888888888887666553 3445566777776657777777777777666544322
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
. ++..|-.++. +...-+++.|+-++..+..
T Consensus 621 ~------a~diL~~L~~--D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 621 V------ATDILEALMY--DTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred H------HHHHHHHHhh--CcHHHHHHHHHHHHHHHHh
Confidence 1 2344444553 3455666677766666544
No 356
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.00 E-value=63 Score=34.94 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc-----cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939 106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK-----RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC 180 (398)
Q Consensus 106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~-----~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~ 180 (398)
+|..-+..+++.. .+..+ +|+++.+++.|.+. ...+.+-.+-|++++.+++.--......+. ..+.=.
T Consensus 391 Aa~~~l~~~~~KR--~ke~l---~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~--~mE~fl 463 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR--GKETL---PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS--QMEYFL 463 (1010)
T ss_pred HHHHHHHHHHHhc--chhhh---hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH--HHHHHH
Confidence 4454555555431 12222 38889999999742 222345557888888877631110000011 112223
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQ 258 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~ 258 (398)
++.+.-.+++.---.|.+||++++.++..+ .....+ ..++....+.|.+..+-.++-.|+-||..+-++.+ +..+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 455555667777788999999999998542 122222 35667777777744366688888999998866554 3233
Q ss_pred HHH--cCChHHHHHHhc
Q 015939 259 LVE--LGMVQILTRILS 273 (398)
Q Consensus 259 ~v~--~g~v~~Lv~lL~ 273 (398)
+-. -+.+..|+.+.+
T Consensus 541 ~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 321 234445555554
No 357
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=3.1 Score=31.97 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=24.2
Q ss_pred CcccccCccccC----CCceecC-CCcccchhHHHHH
Q 015939 12 NLFRCPISLDVM----KSPVSLC-TGVTYDRSSIQHW 43 (398)
Q Consensus 12 ~~~~Cpi~~~~~----~dPv~~~-~g~~~~r~~i~~~ 43 (398)
..-+||-|+.-| ++|++.| ||.+|-|++++..
T Consensus 8 tKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~~ 44 (129)
T COG4530 8 TKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEET 44 (129)
T ss_pred ccccCccccchhhccCCCccccCcccccchHHHHHhh
Confidence 345788887655 6799988 9999988776653
No 358
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=69.94 E-value=2.3 Score=39.24 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=20.0
Q ss_pred cccccCccccCC---CceecCCCcccchhH
Q 015939 13 LFRCPISLDVMK---SPVSLCTGVTYDRSS 39 (398)
Q Consensus 13 ~~~Cpi~~~~~~---dPv~~~~g~~~~r~~ 39 (398)
.|.||+|+..|. ....=+.||+|+..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 334445899998754
No 359
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=69.76 E-value=4.3 Score=26.38 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=20.3
Q ss_pred CccccCC--CceecCCCccc-----chhHHHHHHh-cCCCCCCcc
Q 015939 18 ISLDVMK--SPVSLCTGVTY-----DRSSIQHWLE-SGHDTCPAT 54 (398)
Q Consensus 18 i~~~~~~--dPv~~~~g~~~-----~r~~i~~~~~-~~~~~CP~~ 54 (398)
||.+--. +|.+.||+-+= =++|+++|+. .+...|++|
T Consensus 3 IC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 3 ICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp TTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred EeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 4444433 27888876322 3679999986 456679876
No 360
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.75 E-value=1.1e+02 Score=32.04 Aligned_cols=178 Identities=10% Similarity=0.089 Sum_probs=101.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhh--cCch----hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 184 FLEILREGNLDSKIGSIKILDSIS--LDNE----SKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 184 Lv~lL~~~~~~~~~~a~~~L~~L~--~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
|..-|+..+.++|.+|+.++.++- .+++ ..+.+.+ .-...|.++|+++ .|.++..|..-+.....- . .
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~--kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~--f-W 252 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ--KQFEELYSLLEDP-YPMVRSTAILGVCKITSK--F-W 252 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH--HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH--H-H
Confidence 344556678999999999999874 3333 3444443 3467889999998 888887666555443210 0 1
Q ss_pred HHHHcC----ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 258 QLVELG----MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 258 ~~v~~g----~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
.++-.. .+..+++=+. .+...+|+-....-|-.+..+|..-..+- -++|.+=..|.+.+.+++-.++..|..
T Consensus 253 e~iP~~i~~~ll~kI~d~~a-~dt~s~VR~svf~gl~~~l~np~sh~~le---~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELA-FDTSSDVRCSVFKGLPMILDNPLSHPLLE---QLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhh-hccchheehhHhcCcHHHHcCccchhHHH---HHHHhcchhhhccchhHHHHHHHHHHH
Confidence 111111 1222222222 23344666666666666766665544443 245666667777899999999998877
Q ss_pred hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939 334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV 376 (398)
Q Consensus 334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL 376 (398)
+-..- .-.... -=-.+.++..|.++..+..|+.+.-+.
T Consensus 329 ik~vr--a~~f~~---I~~~d~~l~~L~~d~~~v~rr~~~li~ 366 (1005)
T KOG1949|consen 329 IKAVR--AAKFWK---ICPMDHILVRLETDSRPVSRRLVSLIF 366 (1005)
T ss_pred HHhhh--hhhhhc---cccHHHHHHHHhccccHHHHHHHHHHH
Confidence 65421 011111 112344555666655555555554443
No 361
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=69.70 E-value=1.6e+02 Score=31.47 Aligned_cols=253 Identities=12% Similarity=0.064 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 103 SCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 103 ~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
.+.+.......++.. +...+..+... ..+|.+-.++.+ .+..+ ....+.....+..-.+ +.. .-.-.+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~-~ilp~~~~lv~d-~~~~v--r~a~a~~~~~~~p~~~-----k~~--ti~~ll 439 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDS-SILPEVQVLVLD-NALHV--RSALASVITGLSPILP-----KER--TISELL 439 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchh-hhhHHHHHHHhc-ccchH--HHHHhccccccCccCC-----cCc--CccccC
Confidence 444555555555533 22334445554 555666666655 33222 2333333333322111 011 123456
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
|.+...++...++++.+..+.+..+-.. +........ ...++.++.+-.+. ...++.+..+.+..++.... ..+.
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--~~~~ 515 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--VEFF 515 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--hHHh
Confidence 7777788888889998888777655444 333444444 56788888887766 67788888888887765433 2233
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCC
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKD 340 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~ 340 (398)
+.-..+.+..-+ .+...++.+.|...|..++..-. .++-.. -.++.+..+...++-..+...+..+..++.--+.
T Consensus 516 ~~~~~~l~~~~l--~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ 590 (759)
T KOG0211|consen 516 DEKLAELLRTWL--PDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ 590 (759)
T ss_pred hHHHHHHHHhhh--hhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc
Confidence 222222222323 23355777788877777765222 222221 2344444444433333333333333333211111
Q ss_pred hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 341 ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 341 ~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+...-.++.+..+.. +..+.+|-++++.|..+..
T Consensus 591 -----ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 591 -----EITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILK 625 (759)
T ss_pred -----HHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHh
Confidence 2223334555554443 3366777777777776655
No 362
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.64 E-value=3.8 Score=38.27 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCCcccccCccccCCCceecCCCcccchhHHHHHHhc-CCCCCCccccc
Q 015939 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-GHDTCPATMQI 57 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~CP~~~~~ 57 (398)
=++.-.|-||-.-..=--++||||..|..|--+.... ..+.||.|+..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3456789999999998899999999999997765432 35689999865
No 363
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.42 E-value=4.2 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=24.0
Q ss_pred ccccCccccC--CCceecC--CCcccchhHHHH
Q 015939 14 FRCPISLDVM--KSPVSLC--TGVTYDRSSIQH 42 (398)
Q Consensus 14 ~~Cpi~~~~~--~dPv~~~--~g~~~~r~~i~~ 42 (398)
-.||+|++.| .|.++.- ||-.|=|.|-++
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4699999999 7888874 999999988443
No 364
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.11 E-value=26 Score=36.35 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHHHh-cCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhhccCcHHH
Q 015939 234 EDQALNDAILSILITL-SVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSEEASCAGR 311 (398)
Q Consensus 234 ~~~~~~~~a~~aL~~L-s~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~~g~v~~ 311 (398)
+++..+.+|.-.|+.| |-..+.+.. -.|.|+..|. .+++|.++.+|.-.|.-++.+-. ...+.. ..
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~me-k~p~P~IR~NaVvglgD~~vcfN~~~de~t------~y 975 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSME-KHPIPRIRANAVVGLGDFLVCFNTTADEHT------HY 975 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHh-hCCCcceeccceeeccccceehhhhhHHHH------HH
Confidence 5788999999999988 445454432 5789999996 36899999999988888776332 223333 24
Q ss_pred HHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 312 VVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 312 Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|.+-|.+.+..+++.+...++.|-..+ . +---|-++.+...|... +.++.+.|...+..++.
T Consensus 976 LyrrL~De~~~V~rtclmti~fLilag---q----~KVKGqlg~ma~~L~de-da~Isdmar~fft~~a~ 1037 (1128)
T COG5098 976 LYRRLGDEDADVRRTCLMTIHFLILAG---Q----LKVKGQLGKMALLLTDE-DAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHcc---c----eeeccchhhhHhhccCC-cchHHHHHHHHHHHHHh
Confidence 556677788899999999998877532 1 22245566777777655 89999999999988887
No 365
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=69.06 E-value=69 Score=26.91 Aligned_cols=147 Identities=13% Similarity=0.141 Sum_probs=77.5
Q ss_pred cCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhh
Q 015939 128 YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSIS 207 (398)
Q Consensus 128 ~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~ 207 (398)
.|...+.|+++|+. . .+..++.+++++|..+-.-|+. +.+.+. .+ .+.-. -...+..... ..+.+..
T Consensus 8 yP~LL~~L~~iLk~-e-~s~~iR~E~lr~lGilGALDP~----~~k~~~-~~-~~~~~--~~~~~~~~~~---~~l~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKT-E-QSQSIRREALRVLGILGALDPY----KHKSIQ-KS-LDSKS--SENSNDESTD---ISLPMMG 74 (160)
T ss_pred hHHHHHHHHHHHHh-C-CCHHHHHHHHHHhhhccccCcH----HHhccc-cc-CCccc--cccccccchh---hHHhhcc
Confidence 34567788889987 3 3466779999999999877775 222011 10 11000 0011111111 1111111
Q ss_pred cCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHH
Q 015939 208 LDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSI 286 (398)
Q Consensus 208 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al 286 (398)
..+..-+... ..++..|+++|++++-..-...++.++.++-. ....+...... .+|.++..++. .++...+.-+
T Consensus 75 ~~~~~ee~y~--~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~--~~~~~~e~~~ 149 (160)
T PF11865_consen 75 ISPSSEEYYP--TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRT--CPDSLREFYF 149 (160)
T ss_pred CCCchHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHh--CCHHHHHHHH
Confidence 1112222222 34678899999987333344456666655532 22233444443 88999999963 3447777666
Q ss_pred HHHHHH
Q 015939 287 KMLSIV 292 (398)
Q Consensus 287 ~~L~~L 292 (398)
.-|..|
T Consensus 150 ~qL~~l 155 (160)
T PF11865_consen 150 QQLADL 155 (160)
T ss_pred HHHHHH
Confidence 555554
No 366
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=67.19 E-value=32 Score=28.22 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=55.5
Q ss_pred HHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHH-HHHHHhhc--CcHHHHHHHHHHHHHHhc
Q 015939 309 AGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTK-LLLVMQSE--NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 309 v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~-Ll~~l~~~--~~~~~k~~A~~lL~~l~~ 381 (398)
+..|-+-|.. .++.++..|+.+|..+..+.| .....++...+.+.. |+.++... ....+|++...+++..+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG-~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCG-HRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4455566653 578889999999999888755 677788888899987 88888632 235899999999888887
No 367
>PLN02436 cellulose synthase A
Probab=67.11 E-value=4.1 Score=44.18 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=36.5
Q ss_pred cccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|.||++- .-+|.+- .||.-.||.|.+-=.++|+..||.|+...+
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 79999975 4567664 388889999997767788999999998765
No 368
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=66.24 E-value=78 Score=33.07 Aligned_cols=129 Identities=17% Similarity=0.233 Sum_probs=81.6
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcC
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~ 209 (398)
++|.|...+++ .+.++++.++..+-..+..-+.. .++.-++|.+-.+-. ..+..++.+++.++..+...
T Consensus 390 IlplL~~S~~~---~~~~iQ~~~L~~lptv~e~iD~~-------~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 390 ILPLLYRSLED---SDVQIQELALQILPTVAESIDVP-------FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred HHHHHHHHhcC---cchhhHHHHHHhhhHHHHhccHH-------HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 45555555544 45677899999888777544321 234456777776643 44888999999999988832
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
-+ +..+ ..-+.++.+-.+.. ++......+.+..++.....+...++-..++|.++.+...
T Consensus 460 lD-~~~v---~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 460 LD-KAAV---LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HH-HHHh---HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 11 1222 12344555555555 7888888888777776655543344455688888888853
No 369
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.12 E-value=52 Score=37.35 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=91.1
Q ss_pred hccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 175 LNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
+..++.+=+++++-++. ....|..|+.=+..|+... .....+ ...||.|.++=-++ ++. .+.|+.-+|+.-.
T Consensus 952 l~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l---~kLIPrLyRY~yDP-~~~-Vq~aM~sIW~~Li 1026 (1702)
T KOG0915|consen 952 LGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL---KKLIPRLYRYQYDP-DKK-VQDAMTSIWNALI 1026 (1702)
T ss_pred cCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH---HHhhHHHhhhccCC-cHH-HHHHHHHHHHHhc
Confidence 33455666777777766 7888888888888887762 222222 35788888887777 664 5566777887654
Q ss_pred Cc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH---HHHH
Q 015939 252 YR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA---REDA 327 (398)
Q Consensus 252 ~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~---~~~a 327 (398)
.+ .+...-.--.+.+-|+.-| .+..-++++.++-+|..|-..+..-+..-.-.-.-..+...+.+-.+.+ -+.+
T Consensus 1027 ~D~k~~vd~y~neIl~eLL~~l--t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1027 TDSKKVVDEYLNEILDELLVNL--TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred cChHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3322222223455555555 3457789999999999988743322221100112233333333323333 4466
Q ss_pred HHHHHHhhccC
Q 015939 328 VVVIWSMCCVY 338 (398)
Q Consensus 328 ~~~L~~l~~~~ 338 (398)
+.+|..+|-..
T Consensus 1105 ~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1105 ARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHhhh
Confidence 67777766443
No 370
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=65.96 E-value=1.5e+02 Score=31.47 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=78.7
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHHH
Q 015939 221 NLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEGR 299 (398)
Q Consensus 221 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~~ 299 (398)
.+|..|..+-.+. =+.++..++..+++|-.+...... ..+..||.-| .++...+..+|...|.+|. .+|..+
T Consensus 304 rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKl--GDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 304 RFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKL--GDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhc--CCcchhhhhhHHHHHHHHHhhCCcce
Confidence 4566666666665 678899999999999776654432 2456677777 4567788888888888875 477666
Q ss_pred HHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChhHHHHHHh
Q 015939 300 LALSEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 349 (398)
--+. ..+..++.+ .+...+-+|+..|-.+.....+.++...++.
T Consensus 377 ~Vvi------~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 377 IVVI------DEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred eehH------HHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 5554 235555555 5677788999998776654443455555554
No 371
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=65.86 E-value=2.8 Score=27.69 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=11.6
Q ss_pred CCCCcccccCccc
Q 015939 9 AVPNLFRCPISLD 21 (398)
Q Consensus 9 ~~~~~~~Cpi~~~ 21 (398)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999975
No 372
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=65.09 E-value=48 Score=25.36 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
|.+..|+..|..=-..+--.-..+.+..+.+..|+.-++. .+.. ..+.++..|..+..++.. ..++.+-|+.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf-~~~~--~~~~VL~Ll~~L~~~~~a-----~~~l~~iG~~ 73 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNF-PPVP--MKEEVLALLLRLLKSPYA-----AQILRDIGAV 73 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCC-CCCc--cHHHHHHHHHHHHhCcHH-----HHHHHHccHH
Confidence 4677788776642222222222222221344444444443 2222 348899999998877664 3337778888
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 015939 182 PLFLEILREGNLDSKIGSIKIL 203 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L 203 (398)
..|-++=..-++..+...-.++
T Consensus 74 ~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 74 RFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 8766554444555554433333
No 373
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=64.98 E-value=1.6e+02 Score=29.56 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+=.+.+.|-..+...+.+..+++-+..+.+.... +....+ ..+...+.. . ...+....-+.+|..|+.+..+
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R-----~~fF~~I~~-~-~~~~d~~~~l~aL~~LT~~Grd 100 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMR-----AEFFRDISD-P-SNDDDFDLRLEALIALTDNGRD 100 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHH-----HHHHHHHhc-C-CCchhHHHHHHHHHHHHcCCcC
Confidence 3345555554443334667777777777655332 111111 111233333 1 1122335556666667655443
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC----c-hhHHH----hhchhhHHHHHHHHhccc---c
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD----N-ESKRR----VLETENLLSALFDYLKLA---E 234 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~----~-~~~~~----i~~~~g~i~~Lv~lL~~~---~ 234 (398)
-. ..+.+..+.|...|...- .++..-+..+.. + .+... .......+..++.+++-. -
T Consensus 101 -----i~-~~~~~i~~~L~~wl~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l 169 (464)
T PF11864_consen 101 -----ID-FFEYEIGPFLLSWLEPSY-----QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYL 169 (464)
T ss_pred -----ch-hcccchHHHHHHHHHHHH-----HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCC
Confidence 11 236677888888875321 111111211111 0 00000 000122344444444422 1
Q ss_pred CHHHHHHHHHHHHHhcCCcc------hHHH----HHHcCCh-----HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939 235 DQALNDAILSILITLSVYRS------VKAQ----LVELGMV-----QILTRILSDSRTQILTVEKSIKMLSIVATCSEGR 299 (398)
Q Consensus 235 ~~~~~~~a~~aL~~Ls~~~~------~~~~----~v~~g~v-----~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~ 299 (398)
+.+.....+.-+..+|.... ++-. ++..|.| +.++..|-+-....+....+..+++||++..-+.
T Consensus 170 ~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 170 DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH
Confidence 33444444554555543221 1111 2234433 3355555322334477888999999999866665
Q ss_pred HHHhhccCcHHHHHHHHhc------cChhHHHHHHHHHHHhhccCCChhHHHHHHhcC--CHHHHHHHHhhc
Q 015939 300 LALSEEASCAGRVVERVMK------VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSN--GLTKLLLVMQSE 363 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g--~~~~Ll~~l~~~ 363 (398)
..+. .|..+|.. .+...-.-|+.+|..+.-..+ ++....+--.- +++.+...|+.+
T Consensus 250 ~~i~-------~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~-~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 250 SAIR-------TLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG-EQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred HHHH-------HHHHHHcccCccccccHHHHhhHHHHHHHHHhccc-cCCcceecccHHHHHHHHHHHHhCC
Confidence 5554 36666632 233344567777766554432 12122222222 666777777655
No 374
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=64.70 E-value=69 Score=33.97 Aligned_cols=170 Identities=12% Similarity=0.150 Sum_probs=102.1
Q ss_pred HHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh--HHHHHH
Q 015939 110 KVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL--PLFLEI 187 (398)
Q Consensus 110 ~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i--~~Lv~l 187 (398)
.|......++.+-+.+.+. |+...+...++. . ...+....+++.+.+++...+.. .. ......+ ..+-.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~-f-~~~~~~~~il~~l~n~~~~~~~~----~~-~~~~~~~~~~~f~~~ 565 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDN-GGMKLLFKCLES-F-DNEELHRKILGLLGNLAEVLELR----EL-LMIFEFIDFSVFKVL 565 (699)
T ss_pred HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhh-c-cchhHHHHHHHHHHHHHHHhhhh----hh-hhHHHHHHHHHHHHH
Confidence 6667777888888899999 999999999998 3 33456789999999998755432 11 1100111 122223
Q ss_pred HhcCCh-hhHHHHHHHHHHhhcCc------------------------hhHHHhhchhhHHHH-HHHHhccccCHHHHHH
Q 015939 188 LREGNL-DSKIGSIKILDSISLDN------------------------ESKRRVLETENLLSA-LFDYLKLAEDQALNDA 241 (398)
Q Consensus 188 L~~~~~-~~~~~a~~~L~~L~~~~------------------------~~~~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~ 241 (398)
+..-+. +.-..|+.+|..+..+. ........ ..-+.+ +.+++.....+..+-.
T Consensus 566 ~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il~~s~~~g~~lW 644 (699)
T KOG3665|consen 566 LNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRILRLSKSDGSQLW 644 (699)
T ss_pred HhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHhcccCCCchHHH
Confidence 333333 55555666666554431 11111111 122333 5556665545667888
Q ss_pred HHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 242 ILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 242 a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
|++++.++.. ++++++.+.+.|+++.+..+-... ....+.+.+..++
T Consensus 645 al~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 645 ALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLS-EVVDVKEEAVLVI 692 (699)
T ss_pred HHHHHHHHHHcChhhhhhhHhccchhhhhhcchhH-HHHHHHHHHHHHh
Confidence 8999998874 566888788999999888876432 2344444444333
No 375
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=64.40 E-value=2.2 Score=22.66 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=10.7
Q ss_pred ccccCccccCCCcee
Q 015939 14 FRCPISLDVMKSPVS 28 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~ 28 (398)
|.||+|+..|.++-.
T Consensus 1 y~C~~C~~~f~~~~~ 15 (23)
T PF00096_consen 1 YKCPICGKSFSSKSN 15 (23)
T ss_dssp EEETTTTEEESSHHH
T ss_pred CCCCCCCCccCCHHH
Confidence 568888888777643
No 376
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=64.40 E-value=3 Score=26.95 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
-+.|-.|..|+...+.. ...||+|+++|..
T Consensus 18 C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 36788899999998864 5679999998753
No 377
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.20 E-value=1.2e+02 Score=27.87 Aligned_cols=220 Identities=11% Similarity=0.100 Sum_probs=124.3
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhh
Q 015939 92 EKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN 171 (398)
Q Consensus 92 ~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~ 171 (398)
..|.+++.. .|.+|+..|......-+... +.+ .-+..|+.++.+.- .+......++..+..|.....-. .
T Consensus 6 ~~Ltsed~~--~R~ka~~~Ls~vL~~lp~~~--L~~--~ev~~L~~F~~~rl-~D~~~~~~~l~gl~~L~~~~~~~---~ 75 (262)
T PF14500_consen 6 EYLTSEDPI--IRAKALELLSEVLERLPPDF--LSR--QEVQVLLDFFCSRL-DDHACVQPALKGLLALVKMKNFS---P 75 (262)
T ss_pred hhhCCCCHH--HHHHHHHHHHHHHHhCCHhh--ccH--HHHHHHHHHHHHHh-ccHhhHHHHHHHHHHHHhCcCCC---h
Confidence 345555443 78888888887765533222 222 33566676665522 23344555567666665322210 0
Q ss_pred HhhhccCCChHHHHHHHh--cCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939 172 RLILNTYNCLPLFLEILR--EGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT 248 (398)
Q Consensus 172 ~~il~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 248 (398)
.. ....+..+.+-.+ +-....|..+-.+|..|..+. +.-..++ .+.+..++.+.....||.....+-..+..
T Consensus 76 ~~---~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 76 ES---AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKV 150 (262)
T ss_pred hh---HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 00 0111222222212 224566777888888877663 2222232 46888999999988899998888888888
Q ss_pred hcCCcchHHHHHHcCChHHHHHHhcc-------cC-cch-h-hHHH-HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh
Q 015939 249 LSVYRSVKAQLVELGMVQILTRILSD-------SR-TQI-L-TVEK-SIKMLSIVATCSEGRLALSEEASCAGRVVERVM 317 (398)
Q Consensus 249 Ls~~~~~~~~~v~~g~v~~Lv~lL~~-------~~-~~~-~-~~~~-al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~ 317 (398)
+...-+. ...++-+.+.+.. ++ +|+ . ..+. ..+....|+.++. +. .-++|.|++-|.
T Consensus 151 i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----fa--~~~~p~LleKL~ 218 (262)
T PF14500_consen 151 ILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----FA--PFAFPLLLEKLD 218 (262)
T ss_pred HHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----hH--HHHHHHHHHHHc
Confidence 7654442 2234445555431 12 233 2 2222 2333334554332 22 246888999999
Q ss_pred ccChhHHHHHHHHHHHhhccC
Q 015939 318 KVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 318 ~~~~~~~~~a~~~L~~l~~~~ 338 (398)
++++.++.-++.+|...+...
T Consensus 219 s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHHC
Confidence 999999999999998766543
No 378
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=64.01 E-value=4.8 Score=43.71 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=36.5
Q ss_pred cccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|-||++- .-+|.+- .||--.||.|.+-=.++|+..||+|+...+
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 79999975 5567664 488889999997667789999999997765
No 379
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.98 E-value=67 Score=30.08 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=77.0
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HH
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GR 299 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~ 299 (398)
++...++.|.+. +.+....++..|..|+... +....+... .|..+++-+. +....|...|+.++..+...-. ..
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslK--NlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLK--NLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777 7777788888888887544 333333332 5566666663 3566788888888888876222 22
Q ss_pred HHHhhccCcHHHHHHHH-hc---cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERV-MK---VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD 374 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l-~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~ 374 (398)
.... ..++..| .+ ++.=+++.|-.+|..+..+- -..-++++|...++.. +++++.+++.
T Consensus 165 ~~~l------d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v---------tp~~~L~~L~~~~~~~-n~r~r~~a~~ 227 (334)
T KOG2933|consen 165 DQEL------DDLVTQLLHKASQDNRFVREDAEKALVAMVNHV---------TPQKLLRKLIPILQHS-NPRVRAKAAL 227 (334)
T ss_pred HHHH------HHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc---------ChHHHHHHHHHHHhhh-chhhhhhhhc
Confidence 2222 2233333 33 23335777777887777531 1123455566666655 5667666654
No 380
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=63.87 E-value=3.3 Score=27.01 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=9.1
Q ss_pred cCCCCcccccCccc
Q 015939 8 IAVPNLFRCPISLD 21 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~ 21 (398)
.++|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 47899999999975
No 381
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=63.57 E-value=1.2e+02 Score=27.80 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCC--CchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHH-HHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 87 VRVWIEKIKSENE--SENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVF-GVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 87 i~~l~~~l~~~~~--~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~-~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++..+..+.. ..+.....+..|..+|.... . +.+..++ .+.+.......+.+..++..|..-...
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~-~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P 183 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------L-PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP 183 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------C-ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc
Confidence 3445555554440 00245566677777773311 1 2222333 333332223345566666666654322
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+- +...+..|+++|.++....|.....+|+.+...-+.+...+ .+.+.+|+++|+++ .-..|+
T Consensus 184 ~~-----------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~--~dlispllrlL~t~----~~~eAL 246 (262)
T PF14225_consen 184 DH-----------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHG--ADLISPLLRLLQTD----LWMEAL 246 (262)
T ss_pred hh-----------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcc--hHHHHHHHHHhCCc----cHHHHH
Confidence 11 22457889999999999999999999999988754444443 57999999999887 334455
Q ss_pred HHHHHh
Q 015939 244 SILITL 249 (398)
Q Consensus 244 ~aL~~L 249 (398)
.+|-+.
T Consensus 247 ~VLd~~ 252 (262)
T PF14225_consen 247 EVLDEI 252 (262)
T ss_pred HHHHHH
Confidence 555443
No 382
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.44 E-value=39 Score=37.91 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=99.3
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC-CChHHHHHHHhcC---ChhhHHHHHHHHHH
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY-NCLPLFLEILREG---NLDSKIGSIKILDS 205 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~-g~i~~Lv~lL~~~---~~~~~~~a~~~L~~ 205 (398)
|.+-....+... .....+++-..+.+|.++......+ . +... .+++-+-.+.+.+ ...+...+-..|+.
T Consensus 840 ~~~l~sl~v~~~-s~~~~evr~~sl~~l~silet~ge~----l--l~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrl 912 (1610)
T KOG1848|consen 840 GMLLPSLEVSDN-SSRGVEVRISSLEALVSILETVGEH----L--LHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRL 912 (1610)
T ss_pred HHHHHHHHHHHh-cCccceeeHHHHHHHHHHHhccchh----h--ccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhh
Confidence 444444455444 3445566677788888877655531 1 2111 2222222222222 23444455666776
Q ss_pred hhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH-HHcCChHHHHHHhcccCcchhhHH
Q 015939 206 ISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL-VELGMVQILTRILSDSRTQILTVE 283 (398)
Q Consensus 206 L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~-v~~g~v~~Lv~lL~~~~~~~~~~~ 283 (398)
++.+- ..-..=.- .+.|+.++.+-+...|....-.|+..+|+++..-.++..- -+-+.-...++.+.+......+.-
T Consensus 913 IssDfLqSLp~sci-~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~ 991 (1610)
T KOG1848|consen 913 ISSDFLQSLPTSCI-LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILP 991 (1610)
T ss_pred hhhcchhcCChHHH-HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhh
Confidence 66652 11111112 5778888888776667778888999999987544442222 233344445555543333444444
Q ss_pred HHHH--HHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939 284 KSIK--MLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKT 322 (398)
Q Consensus 284 ~al~--~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~ 322 (398)
++++ ++.+|+. +++.|.++. .|+++.+.+.+.+.+.+
T Consensus 992 e~lwi~ll~~L~~~~~dsr~eVR--ngAvqtlfri~~Shg~~ 1031 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLCEDSRAEVR--NGAVQTLFRIFNSHGSK 1031 (1610)
T ss_pred hHHHHHHHHHHHHHhccchHHHh--hhHHHHHHHHHhhhccc
Confidence 4443 4555665 455666666 38888888888764333
No 383
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=62.87 E-value=3.8 Score=38.93 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=34.4
Q ss_pred cccccCccccCC----CceecCCCcccchhHHHHHHhc-CCCCCCccc
Q 015939 13 LFRCPISLDVMK----SPVSLCTGVTYDRSSIQHWLES-GHDTCPATM 55 (398)
Q Consensus 13 ~~~Cpi~~~~~~----dPv~~~~g~~~~r~~i~~~~~~-~~~~CP~~~ 55 (398)
++.|-.|++.+- .---+||.|.|--.|+.+.+.+ +.++||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 457999998763 2335899999999999999864 567999998
No 384
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=62.73 E-value=1.3e+02 Score=27.71 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhhh-hh---hhhhhhhhcCCcHH-HHHHHhhhccCCcHHHHHHHHHHHHhhhcccch-----------
Q 015939 103 SCVDYLVKVAKFATG-CE---ANRRFLASYGGFVE-AVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV----------- 166 (398)
Q Consensus 103 ~~~~al~~L~~l~~~-~~---~~r~~i~~~~g~v~-~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~----------- 166 (398)
.+..+++.|..+.+. ++ ..|+.+++. +.++ -|+.+|.+ ...+..+...+++.|.+|+..-+.
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~-~iv~~DLiPiL~~-~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~ 87 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQRDVRRQLGEW-NIVQKDLIPILIS-YKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQ 87 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchHHHHHHHHHh-chhhhhHHHHHHh-ccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHH
Confidence 566677766665543 22 336677777 6666 67777776 333567789999999998862221
Q ss_pred ----------HHHhhHhhhccCCChHHHHHHHhcC-----------ChhhHHHHHHHHHHhhcC
Q 015939 167 ----------KEKLNRLILNTYNCLPLFLEILREG-----------NLDSKIGSIKILDSISLD 209 (398)
Q Consensus 167 ----------~~~~~~~il~~~g~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~L~~~ 209 (398)
....|+. +.+.+++..++..+... +..+.+.....++|+..-
T Consensus 88 ~~~~~~l~~~l~~yK~a-fl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 88 RRNIPELLKYLQSYKEA-FLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 1123444 44677777777666211 234456677777777655
No 385
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=62.67 E-value=2.8 Score=38.01 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=10.1
Q ss_pred CCCCcccccCCCC
Q 015939 49 DTCPATMQILSTK 61 (398)
Q Consensus 49 ~~CP~~~~~l~~~ 61 (398)
..||.|++.|.++
T Consensus 216 F~C~hC~kAFADR 228 (279)
T KOG2462|consen 216 FSCPHCGKAFADR 228 (279)
T ss_pred ccCCcccchhcch
Confidence 3699999887665
No 386
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=62.44 E-value=68 Score=25.67 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHH
Q 015939 61 KEFVPNLTLHRLIAHWSHQLTV-PEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGV 138 (398)
Q Consensus 61 ~~l~~n~~l~~~i~~~~~~~p~-p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~l 138 (398)
....|...+.++. +|....++ ..+-...|.++|...+.. ...++|+.|..++..++ ..+..+.+..-.|..+.++
T Consensus 14 ~~p~pgy~~~Eia-~~t~~s~~~~~ei~d~L~kRL~~~~~h--VK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f 90 (122)
T cd03572 14 DEPTPGYLYEEIA-KLTRKSVGSCQELLEYLLKRLKRSSPH--VKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANY 90 (122)
T ss_pred CCCCchHHHHHHH-HHHHcCHHHHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHc
Confidence 3456777666554 44332222 134466788888887765 67999999999887644 5566666653455555555
Q ss_pred hh
Q 015939 139 LN 140 (398)
Q Consensus 139 L~ 140 (398)
=.
T Consensus 91 ~g 92 (122)
T cd03572 91 KG 92 (122)
T ss_pred CC
Confidence 43
No 387
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=62.13 E-value=4.7 Score=28.03 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=8.3
Q ss_pred cchhHHHHHHh
Q 015939 35 YDRSSIQHWLE 45 (398)
Q Consensus 35 ~~r~~i~~~~~ 45 (398)
|||.|+.+|..
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 388
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=61.54 E-value=1.1e+02 Score=28.10 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=42.3
Q ss_pred cCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939 177 TYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT 248 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 248 (398)
..-.|+.|.+.|... .+-+|..|+.+|..++. ...++.|.+++.+. ++-+++.+..+|--
T Consensus 216 s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~-~~vv~esc~valdm 277 (289)
T KOG0567|consen 216 SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDE-ERVVRESCEVALDM 277 (289)
T ss_pred chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCc-HHHHHHHHHHHHHH
Confidence 455688888888754 78889999999988765 34567777787777 55555555555543
No 389
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=61.03 E-value=5.5 Score=30.85 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=16.2
Q ss_pred CceecC---CCcccchhHHHHHHh
Q 015939 25 SPVSLC---TGVTYDRSSIQHWLE 45 (398)
Q Consensus 25 dPv~~~---~g~~~~r~~i~~~~~ 45 (398)
+||-+. || |.||.||++|=.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 688774 66 899999999953
No 390
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.49 E-value=50 Score=34.65 Aligned_cols=120 Identities=9% Similarity=0.087 Sum_probs=71.8
Q ss_pred CChHHHHHH-HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 179 NCLPLFLEI-LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 179 g~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
++|..|+.+ .+..+.++|..|+.+|..+... +...++..|.+|+..-++-++-.++.+|.-.|.+.-++.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~---------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEec---------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 445555555 3344778888888888755443 244566678888876688899999999988887766554
Q ss_pred HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-C-HHHHHHHhhccCcHHHHHHHHhc
Q 015939 258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-C-SEGRLALSEEASCAGRVVERVMK 318 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~-~~~~~~i~~~~g~v~~Lv~~l~~ 318 (398)
. +..|=.+.. +...-|++-|+-++..+-. + +.....+ .|....+.+++..
T Consensus 625 A------i~lLepl~~--D~~~fVRQgAlIa~amIm~Q~t~~~~pkv---~~frk~l~kvI~d 676 (929)
T KOG2062|consen 625 A------INLLEPLTS--DPVDFVRQGALIALAMIMIQQTEQLCPKV---NGFRKQLEKVIND 676 (929)
T ss_pred H------HHHHhhhhc--ChHHHHHHHHHHHHHHHHHhcccccCchH---HHHHHHHHHHhhh
Confidence 3 333434442 3455566677766666543 2 1211121 1445556666654
No 391
>PRK01343 zinc-binding protein; Provisional
Probab=60.43 E-value=7.7 Score=26.32 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=21.8
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGH 48 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~ 48 (398)
...||+|+..+..+..--|....-.-=+.+|+.+++
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~Y 44 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGSY 44 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCCc
Confidence 467999999877654322333333344677887543
No 392
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.58 E-value=4.8 Score=39.49 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=49.1
Q ss_pred cCCCCcccccCc-cccCCCceecC--CCcccchhHHHHHHhcC-CCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 8 IAVPNLFRCPIS-LDVMKSPVSLC--TGVTYDRSSIQHWLESG-HDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 8 ~~~~~~~~Cpi~-~~~~~dPv~~~--~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
...+++..||+| ++.|.|-+++. |+.+||..||.+.+-.+ ..-|+.|... ...+.++..++..+..-.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~--~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL--ADDLLPPKTLRDTINRIL 285 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc--ccccCCchhhHHHHHHHH
Confidence 367889999999 99999999994 99999999999987532 2345555332 335667776666655443
No 393
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.47 E-value=29 Score=34.62 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=57.4
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhcC
Q 015939 309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~~ 382 (398)
+..|.+.+...++.++-.|+.+|..+.++-| ......+...+++..++...... .+..+|+++..++..=..+
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG-~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCG-YSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 3344445555678999999998887776644 67778999999999999999777 6789999998888776663
No 394
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.47 E-value=7.3 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=7.2
Q ss_pred CCCCCccccc
Q 015939 48 HDTCPATMQI 57 (398)
Q Consensus 48 ~~~CP~~~~~ 57 (398)
...||.|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4479999764
No 395
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=59.36 E-value=4.5 Score=26.98 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=10.1
Q ss_pred CcccccCccccCCC
Q 015939 12 NLFRCPISLDVMKS 25 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d 25 (398)
+|+.||+|+.=.+.
T Consensus 3 ~Wi~CP~CgnKTR~ 16 (55)
T PF14205_consen 3 EWILCPICGNKTRL 16 (55)
T ss_pred eEEECCCCCCccce
Confidence 57899999854433
No 396
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=59.25 E-value=2.2e+02 Score=29.47 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=57.0
Q ss_pred CChHHHHHHHh----cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHHHHHHhcCC
Q 015939 179 NCLPLFLEILR----EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA--EDQALNDAILSILITLSVY 252 (398)
Q Consensus 179 g~i~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls~~ 252 (398)
..++.|...|. .++.+-+..++.+|+|+.. ...++.|..++... .+...+.+|+.+|..+...
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 34555665555 3355667777777877753 34566677766654 3466788888888877544
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI 291 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~ 291 (398)
.... +.+.|+.+..+...+.+++..|..+|..
T Consensus 555 ~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 CPEK-------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred CcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3322 3467777876556677777777655554
No 397
>PLN03205 ATR interacting protein; Provisional
Probab=58.78 E-value=37 Score=32.87 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=49.0
Q ss_pred cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
....++-.|+.+.--+...+...-.++...+..+++.+-++|+..++..+|+.|..+|.+|-.
T Consensus 384 TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 384 TEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 455667788888766666543234567778889999999999988889999999998887755
No 398
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=58.53 E-value=6.9 Score=42.45 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=36.8
Q ss_pred ccccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
-.|-||++- .-||.+- .||.-.||.|.+-=.++|+..||+|+...+
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 369999874 5567664 488889999997667788999999998765
No 399
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.45 E-value=2.8e+02 Score=30.33 Aligned_cols=180 Identities=11% Similarity=0.082 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcCc-hhHHHhhc-hhhHHHH
Q 015939 149 VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLDN-ESKRRVLE-TENLLSA 225 (398)
Q Consensus 149 ~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~-~~g~i~~ 225 (398)
.+..|++.+..++.-+=..+.+ -..++....+.|. +....++..|+.+|..+..+. .+...+.. ..+.+..
T Consensus 478 Lrarac~vl~~~~~~df~d~~~------l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~ 551 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNN------LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQE 551 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHH------HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHH
Confidence 4578888888887321110001 1234666677777 568899999999999888774 44454543 2456666
Q ss_pred HHHHhccccCHHHHHHHHHHH-HHhcCC-cchHHHHHHcCChHHHHHHhcc----cCcchhhHHHHHHHHHHHhC-----
Q 015939 226 LFDYLKLAEDQALNDAILSIL-ITLSVY-RSVKAQLVELGMVQILTRILSD----SRTQILTVEKSIKMLSIVAT----- 294 (398)
Q Consensus 226 Lv~lL~~~~~~~~~~~a~~aL-~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~----- 294 (398)
|+.+.+.- +.+.....+..+ ...+.. ......++ ........++++. .+.+.+=...|.++|+.+.+
T Consensus 552 lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 552 LLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 66666654 223333333322 222211 11111122 2245556666652 11222333456666665543
Q ss_pred --CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 295 --CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 295 --~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
+++.-+.+. .-..+.+-.++...-...-+.+..++..++..+
T Consensus 630 e~~p~vl~~le--~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 630 ENHPEVLKQLE--PIVLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred hccHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 333333332 234555555555566677777787777777655
No 400
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.19 E-value=4.9 Score=36.62 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=21.7
Q ss_pred cchhHHHHHHhc------------CCCCCCcccccCCCCC
Q 015939 35 YDRSSIQHWLES------------GHDTCPATMQILSTKE 62 (398)
Q Consensus 35 ~~r~~i~~~~~~------------~~~~CP~~~~~l~~~~ 62 (398)
.||+|+.+||.. |..+||.||++++-.|
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 468999999831 4568999999987554
No 401
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.10 E-value=96 Score=24.82 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh
Q 015939 283 EKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ 361 (398)
Q Consensus 283 ~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~ 361 (398)
...+.-|..++. ++.....++ ..|.+-|.+.++-++-.++.+|-.+|..+ ++..+..+.+.-.+.+-+.-.+
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~------d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELL------EYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHH------HHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcC
Confidence 344444555544 334444444 35777788889999999999999999875 4677766665433333333332
Q ss_pred h-----c---CcHHHHHHHHHHHHHHhc
Q 015939 362 S-----E---NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 362 ~-----~---~~~~~k~~A~~lL~~l~~ 381 (398)
. . -+..+|..|..++..+-.
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 2 1 123799999999988765
No 402
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=58.05 E-value=5.9 Score=22.21 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.8
Q ss_pred ccCccccC
Q 015939 16 CPISLDVM 23 (398)
Q Consensus 16 Cpi~~~~~ 23 (398)
||-|+...
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 45554443
No 403
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=57.81 E-value=3.6e+02 Score=31.38 Aligned_cols=230 Identities=13% Similarity=0.144 Sum_probs=115.0
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-----cCCChHHHHHHHhcC-ChhhHHHHHHHHH
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-----TYNCLPLFLEILREG-NLDSKIGSIKILD 204 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-----~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 204 (398)
++..|..++.+ . . .+.-..+.+|.+|..+.+..++.|..++. ....+|.++++|=.. +..-....+.-|+
T Consensus 228 v~~~L~~ll~~-~-~--~L~~~iLd~Ls~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR 303 (1426)
T PF14631_consen 228 VVEELLELLQE-N-P--ELTVPILDALSNLNLSPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELR 303 (1426)
T ss_dssp HHHHHHHHHHH---S--TTHHHHHHHHHHS---HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-C--chhhhHHHHHhcCCCCHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 45556677765 2 2 23467789999999888877777777554 345599999988643 3221122222233
Q ss_pred -HhhcC----c----hhHHHh-------------hchhhHHHHHHHHhccc--cCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 205 -SISLD----N----ESKRRV-------------LETENLLSALFDYLKLA--EDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 205 -~L~~~----~----~~~~~i-------------~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
+|-.. + .....+ ....+....+++.|+++ -...+-.+-++++.++....+
T Consensus 304 ~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~------ 377 (1426)
T PF14631_consen 304 ENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLEDASD------ 377 (1426)
T ss_dssp HHHH-------------------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT------
T ss_pred HHccccccccchhhcccccccccCcccccccccccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccc------
Confidence 22100 0 000000 01112345566666654 234455666777777643222
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHH-----------HHhhccCcHHHHHHHHh----ccChhHHH
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRL-----------ALSEEASCAGRVVERVM----KVGKTARE 325 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~-----------~i~~~~g~v~~Lv~~l~----~~~~~~~~ 325 (398)
.-.++.++-++-. +....-...+-.+|++-...+.-.. .++ ....+.++.+.. +.++.+++
T Consensus 378 -hkv~Dl~lLlil~-s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL--~~~f~siL~la~~Ll~S~e~~v~~ 453 (1426)
T PF14631_consen 378 -HKVIDLWLLLILY-SINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVL--KDYFPSILSLAQSLLRSKEPSVRE 453 (1426)
T ss_dssp ---THHHHHHHHHH-HH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHTSSSHHHHH
T ss_pred -cchHHHHHHHHHH-cCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2356666666531 1222334456666666554333222 222 245556655543 36777777
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+......+-... +. ..+..++..|+..+-++.+.++ ..|..+|..|..
T Consensus 454 FG~~~Y~~lF~~f-ds-----~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 454 FGSHLYKYLFKEF-DS-----YCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAE 502 (1426)
T ss_dssp HHHHHHHHHHHSS--H-----HHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-cc-----hhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHh
Confidence 7665554444322 12 2233467778888877744444 677777777765
No 404
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=56.94 E-value=2.5e+02 Score=29.18 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=91.7
Q ss_pred hhhhhhcCCc---HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhc----CChh
Q 015939 122 RRFLASYGGF---VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILRE----GNLD 194 (398)
Q Consensus 122 r~~i~~~~g~---v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~----~~~~ 194 (398)
.+.+..+ |. +..+..++.+ ..-.. ..|...|..+...... . ....+..+..++.. .+..
T Consensus 385 lDal~~a-GT~~av~~i~~~I~~-~~~~~---~ea~~~l~~l~~~~~~--P-------t~e~l~~l~~L~~~~~~~~~~~ 450 (618)
T PF01347_consen 385 LDALPQA-GTNPAVKFIKDLIKS-KKLTD---DEAAQLLASLPFHVRR--P-------TEELLKELFELAKSPKVKNSPY 450 (618)
T ss_dssp HHHHHHH--SHHHHHHHHHHHHT-T-S-H---HHHHHHHHHHHHT--------------HHHHHHHHHHHT-HHHHT-HH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHc-CCCCH---HHHHHHHHHHHhhcCC--C-------CHHHHHHHHHHHhCccccCChh
Confidence 3445555 54 4555566655 22221 3355555554432211 0 11236666666653 3566
Q ss_pred hHHHHHHHHHHhhcCc-hh---------HHHhhchhhHHHHHHHHhcc---ccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939 195 SKIGSIKILDSISLDN-ES---------KRRVLETENLLSALFDYLKL---AEDQALNDAILSILITLSVYRSVKAQLVE 261 (398)
Q Consensus 195 ~~~~a~~~L~~L~~~~-~~---------~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~ 261 (398)
++..|...+..|...- .. ...... ...++.|...|.. ..+.+.+..++++|.|+-.
T Consensus 451 l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------- 519 (618)
T PF01347_consen 451 LRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------
Confidence 7777777777775431 11 111111 3466677776662 2356788899999999743
Q ss_pred cCChHHHHHHhccc-CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHH
Q 015939 262 LGMVQILTRILSDS-RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK--VGKTAREDAVVVIWS 333 (398)
Q Consensus 262 ~g~v~~Lv~lL~~~-~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~ 333 (398)
...++.|..++.+. ..+..++..|+.+|+.++. .++.... .+..++.+ .+.+++-.|..+|..
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---------~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---------ILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---------HHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---------HHHHHhcCCCCChhHHHHHHHHHHh
Confidence 23677777777543 3356777889999987755 2322222 23445554 456666666655543
No 405
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=56.89 E-value=35 Score=25.78 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
.+...+..|.++ .+.++..++..|..|....+ ....--.+++..+...|+ ++|+-+--+|...|..|+.
T Consensus 4 ~~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDP-LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCC-CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHH
Confidence 345566777777 67799999999999976665 111223457777888884 4778888899999999886
No 406
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=56.61 E-value=10 Score=31.37 Aligned_cols=33 Identities=21% Similarity=0.552 Sum_probs=20.4
Q ss_pred CCCcccchhHHHHHHh----------cCCCCCCccccc-CCCCCCcccH
Q 015939 30 CTGVTYDRSSIQHWLE----------SGHDTCPATMQI-LSTKEFVPNL 67 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~----------~~~~~CP~~~~~-l~~~~l~~n~ 67 (398)
.+||+|+ .||. .|.-+||+|+-. +....+-|+.
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAV 52 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCee
Confidence 3799986 4663 256789999754 2233445553
No 407
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=56.61 E-value=1e+02 Score=24.71 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=64.4
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c-------------hhHHHhhc-hhhHHHHHHHHhccccC---HHHHH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLD-N-------------ESKRRVLE-TENLLSALFDYLKLAED---QALND 240 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-------------~~~~~i~~-~~g~i~~Lv~lL~~~~~---~~~~~ 240 (398)
..++.+++.+.++ +........+|..+..+ . +.+..+.. ...++..+.++|....+ .+...
T Consensus 26 ~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~ 104 (148)
T PF08389_consen 26 DFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVK 104 (148)
T ss_dssp THHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHH
T ss_pred hHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4677777777663 44455566666655443 1 11111221 13455556666665522 77889
Q ss_pred HHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 241 AILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 241 ~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
.++.++......-+ ...+.+.+.++.+.++|. ++...+.|+.+|
T Consensus 105 ~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~----~~~~~~~A~~cl 148 (148)
T PF08389_consen 105 AALKCLKSWISWIP-IELIINSNLLNLIFQLLQ----SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT----SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcC----CHHHHHHHHHhC
Confidence 99999999877433 344556779999999994 566688887765
No 408
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.43 E-value=1.7e+02 Score=27.11 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=48.8
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH-HHhhchhhHHHH----HHHHhc-------cccCHHHHHHHHHH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK-RRVLETENLLSA----LFDYLK-------LAEDQALNDAILSI 245 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~-~~i~~~~g~i~~----Lv~lL~-------~~~~~~~~~~a~~a 245 (398)
=++|.++.+++..+.+.|..++.+|..+... +... ..+.. .|..+. |...|. ...+..+...+..+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR-TGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-cChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4699999999999999999999999998876 3333 12222 454333 333443 11256678888888
Q ss_pred HHHhc
Q 015939 246 LITLS 250 (398)
Q Consensus 246 L~~Ls 250 (398)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 88884
No 409
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=55.68 E-value=10 Score=29.37 Aligned_cols=50 Identities=18% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCcccccCccccCCCceecC-CCc-----ccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLC-TGV-----TYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~-~g~-----~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
++.+.|||++.+-++=|-.. ++. -|+..++.+....|.+ =|.+|+++...
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~s 93 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPS 93 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChh
Confidence 34568999999999988875 222 4899999999876543 38888887643
No 410
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=55.47 E-value=6.9 Score=32.46 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=23.1
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHh-cCCCCCCcccccCCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE-SGHDTCPATMQILSTKE 62 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~~~~ 62 (398)
...|.||-|+ ++|.-.-.....+ .|...||.|+..+...+
T Consensus 97 ~~~Y~Cp~C~------------~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 97 NAYYKCPNCQ------------SKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEEECcCCC------------CEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
Confidence 4577898655 4444221122211 24467999999887554
No 411
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=54.97 E-value=1.7e+02 Score=28.41 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=73.1
Q ss_pred ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc----cc-cCHHHHHHHHHHHHHhcCCcch-----------
Q 015939 192 NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK----LA-EDQALNDAILSILITLSVYRSV----------- 255 (398)
Q Consensus 192 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~----~~-~~~~~~~~a~~aL~~Ls~~~~~----------- 255 (398)
....|..|+..|+.|+..- ...+.. -+...+-.+|. ++ .+...+..|+..+..|+.....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~--~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKF--EKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp --SHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cCCcHHHHHHHHHHHHHHH--hHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 3455677888888998651 122111 11122233333 22 3667888999999999754422
Q ss_pred --HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 256 --KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 256 --~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
-..+...-++|-|. .+.+..|-++..|++.+...... -.++.+. +.++.++..|..++..+..+|+.++
T Consensus 300 v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22233333344333 12345667788888888887662 2233333 5899999999999998888887654
No 412
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.42 E-value=9.8 Score=27.46 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=22.3
Q ss_pred cccCccccC-----CCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDVM-----KSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~~-----~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|-||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+...+
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 688887643 455554 388888999998888889999999987655
No 413
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.24 E-value=2.7 Score=30.19 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=20.5
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG 47 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~ 47 (398)
+.||+|+--|.--+..---.-||..|=.-|++.|
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCrGVWLDrG 35 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCRGVWLDRG 35 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCccccEeecch
Confidence 4799999887655544333345555555555443
No 414
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=53.45 E-value=1.3e+02 Score=25.12 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEG 298 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~ 298 (398)
...++.|+++|++..+...++.++++|..|-.-+..+.+.+..+.= .-.. .+.........+ ...... ..++-
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~-~~~~~~~~~~~l-~~~~~~~~~ee~ 82 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSS-ENSNDESTDISL-PMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----cccc-ccccccchhhHH-hhccCCCchHHH
Confidence 6678899999999878999999999999997766666664322111 0000 011112222111 111111 12222
Q ss_pred HHHHhhccCcHHHHHHHHhccC-hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 299 RLALSEEASCAGRVVERVMKVG-KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
... .++..|+.+|++.+ ..-...++.++..+.+..+ ..++..+ .-++|.++..+++. ++..++.-
T Consensus 83 y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~-~~cv~~L--~~viP~~l~~i~~~-~~~~~e~~ 148 (160)
T PF11865_consen 83 YPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG-LKCVPYL--PQVIPIFLRVIRTC-PDSLREFY 148 (160)
T ss_pred HHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC-cCchhHH--HHHhHHHHHHHHhC-CHHHHHHH
Confidence 222 34667888887643 3333456677667665432 3343322 23788899999854 55666654
No 415
>PHA03096 p28-like protein; Provisional
Probab=53.34 E-value=8.2 Score=35.77 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=28.5
Q ss_pred ccccCccccCCC--------ceecCCCcccchhHHHHHHhcC--CCCCCcccc
Q 015939 14 FRCPISLDVMKS--------PVSLCTGVTYDRSSIQHWLESG--HDTCPATMQ 56 (398)
Q Consensus 14 ~~Cpi~~~~~~d--------Pv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~ 56 (398)
..|.||.+.-.+ =++..|.|.||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 468888775432 2333599999999999997532 345555543
No 416
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.79 E-value=2.8e+02 Score=28.55 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=76.0
Q ss_pred ChHHHHHHHhcC----ChhhHHHHHHHHHHhhcC----chhH-HHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHH
Q 015939 180 CLPLFLEILREG----NLDSKIGSIKILDSISLD----NESK-RRVLETENLLSALFDYLKLA---EDQALNDAILSILI 247 (398)
Q Consensus 180 ~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~----~~~~-~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~ 247 (398)
.+..+..++.+. ...++..|...+..+... .+.. ..+. ...++.|...|... .+.+.+...+++|.
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL--EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH--HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 467777777654 445666677777666542 2211 1221 35677777766542 24555677788888
Q ss_pred HhcCCcchHHHHHHcCChHHHHHHhc-ccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc--cChhH
Q 015939 248 TLSVYRSVKAQLVELGMVQILTRILS-DSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK--VGKTA 323 (398)
Q Consensus 248 ~Ls~~~~~~~~~v~~g~v~~Lv~lL~-~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~ 323 (398)
|+-... .++.+..++. +...+..++..|+.+|+.++. .+...+. .+..+..+ .++++
T Consensus 472 N~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~---------~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE---------VLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH---------HHHHHHcCCCCChHH
Confidence 864432 3455555553 223456788899999998874 3332222 23334443 46666
Q ss_pred HHHHHHHHH
Q 015939 324 REDAVVVIW 332 (398)
Q Consensus 324 ~~~a~~~L~ 332 (398)
+-.|+.+|.
T Consensus 533 RiaA~~~lm 541 (574)
T smart00638 533 RMAAVLVLM 541 (574)
T ss_pred HHHHHHHHH
Confidence 666665553
No 417
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=52.03 E-value=5.2 Score=21.01 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=6.7
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.||+|+..|.++
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 4577776666554
No 418
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=51.98 E-value=2.3e+02 Score=27.41 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHc---CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH
Q 015939 235 DQALNDAILSILITLSVYRSVKAQLVEL---GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGR 311 (398)
Q Consensus 235 ~~~~~~~a~~aL~~Ls~~~~~~~~~v~~---g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~ 311 (398)
+.++..+|+++|..+-.+++....+-+. -.+...+..+.+++.+..++...+++|+.=--.+. ++ ....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~-~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IM-TSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----cc-chhhHHH
Confidence 5578889999999887766655444321 14566777776555566777777777665222221 32 2234444
Q ss_pred HHHHHhc-----cChhHHHHHHHHHHHhhccCCChhHHHHHHh-cC-CHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 312 VVERVMK-----VGKTAREDAVVVIWSMCCVYKDARVKEAVVN-SN-GLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 312 Lv~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~g-~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..+.. ++..+....+.++.++.... ...|+. .+ -++.++..+-+. ...+|.+|..++..+..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~-----p~~M~~~~~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~ 204 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQF-----PQQMIKHADIWFPILFPDLLSS-AKDIRTKAISLLLEAKK 204 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 5544432 56777788888888888643 222332 33 466666666554 57788888777776654
No 419
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.77 E-value=17 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.0
Q ss_pred ccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 34 TYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 34 ~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
|||..|-+..+. ..||-|+-.|...+
T Consensus 30 TFC~~C~e~~l~---~~CPNCgGelv~RP 55 (57)
T PF06906_consen 30 TFCADCAETMLN---GVCPNCGGELVRRP 55 (57)
T ss_pred cccHHHHHHHhc---CcCcCCCCccccCC
Confidence 999999998873 37999998776554
No 420
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=50.59 E-value=2.6e+02 Score=27.52 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc----CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc
Q 015939 102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR----RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT 177 (398)
Q Consensus 102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~----~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~ 177 (398)
+..++|+++|.++.-.++..|....+. .....++.++.... .-+.+ -.=++.|..+..-..++ |...+..
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~-~~~~~ll~~v~~~~er~~~~~~~--~~dlrLLflltale~~~---Rsql~~~ 185 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLEN-PLTGKLLQRVLGEFERNFPKDSS--IFDLRLLFLLTALETDH---RSQLIAE 185 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhh-hhHHHHHHHHHHHHHhcCCccch--hhHHHHHHHHHHhhHHH---HHHHHHH
Confidence 467899999999998888888888887 66666665553211 11222 33355555554433343 6665778
Q ss_pred CCChHHHHHHHhc
Q 015939 178 YNCLPLFLEILRE 190 (398)
Q Consensus 178 ~g~i~~Lv~lL~~ 190 (398)
.++++.+.+.|..
T Consensus 186 l~Gl~~lt~~led 198 (532)
T KOG4464|consen 186 LLGLELLTNWLED 198 (532)
T ss_pred hcccHHHHHHhhc
Confidence 8899999999864
No 421
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.47 E-value=1.7e+02 Score=25.28 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhCC
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD--SRTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~~ 295 (398)
.-..|+..|+.+.+.......+++|..|..+...-+ ...|.++.++.-+.. .+.|..++..++.++..+.+.
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 345566777776677889999999999987655221 123555554443320 246888999999999888763
No 422
>PLN02400 cellulose synthase
Probab=49.68 E-value=9 Score=41.76 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=36.0
Q ss_pred cccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|-||++- .-+|.+- .||--.||.|.+-=.++|+..||+|+...+
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 79999874 4567664 388889999996656788999999998765
No 423
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=49.51 E-value=86 Score=27.40 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=46.0
Q ss_pred hHHHH-HHcCChHHHHHHhcccCcc----------------hhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHH
Q 015939 255 VKAQL-VELGMVQILTRILSDSRTQ----------------ILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 255 ~~~~~-v~~g~v~~Lv~lL~~~~~~----------------~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
.++.+ -+.|++..++++|+.+-.. ..+...|...|..++. +.++...+..+ ++.++..+
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~ 110 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIF 110 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----H
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHH
Confidence 44444 4899999999999642221 3577899999999998 55666666643 44334444
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE 363 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~ 363 (398)
.......--.+..+|..+-..+ .+....+.+. .+..++.++...
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN--~~L~~~i~e~-~I~~~i~ll~~~ 154 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDN--PELCESISEE-HIEKFIELLRKH 154 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT--------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCc--HHHHHHhhHH-HHHHHHHHHHHc
Confidence 4322222234566666666543 4555554433 477777777653
No 424
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.06 E-value=3.2e+02 Score=28.13 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=77.3
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHh---
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITL--- 249 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~L--- 249 (398)
....+..+.+.+.++..... .++.++..+... ... +...++.+..+++++ ..+.+...|+-++.+|
T Consensus 355 T~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~P------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYP------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcC------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 44567777888887754433 233333333221 111 134566677777654 3455666667666666
Q ss_pred -cCCcchHHHHHHcCChHHHHHHhccc--CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh---ccChhH
Q 015939 250 -SVYRSVKAQLVELGMVQILTRILSDS--RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM---KVGKTA 323 (398)
Q Consensus 250 -s~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~---~~~~~~ 323 (398)
|.+.+.+...+-...++.+.+.|... ..+..-+..++.+|.|+.. + ..++.+..++. ..+...
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~----------~~i~~l~~~l~~~~~~~~~i 496 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-P----------SSIKVLEPYLEGAEPLSTFI 496 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-h----------hHHHHHHHhcCCCCCCCHHH
Confidence 44444332222233667777766421 2234445567777777654 2 22333333443 135677
Q ss_pred HHHHHHHHHHhhcc
Q 015939 324 REDAVVVIWSMCCV 337 (398)
Q Consensus 324 ~~~a~~~L~~l~~~ 337 (398)
+..|+.+|..++..
T Consensus 497 R~~Av~Alr~~a~~ 510 (574)
T smart00638 497 RLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHHHHHHh
Confidence 88899998887753
No 425
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=1.2e+02 Score=31.03 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=72.1
Q ss_pred hhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH
Q 015939 220 ENLLSALFDY-LKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG 298 (398)
Q Consensus 220 ~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~ 298 (398)
.|++..|+.. .++. +.+++++|.-+|.-+|..+.+ .++..+++|++ +-++-++.-..-+|.--|.+...
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~-shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSE-SHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhh-ccchhhhhhhHHHhhhhhcCCcc
Confidence 4667777776 4444 778899998888887766543 66777888863 33555555555555554442221
Q ss_pred HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh
Q 015939 299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ 361 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~ 361 (398)
+. ++..|-.++.+..+-+++.|+-++..+..+.. ++....+ .+...++.+++.
T Consensus 620 ~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v--~~I~k~f~~vI~ 672 (926)
T COG5116 620 KV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCN-PELNPNV--KRIIKKFNRVIV 672 (926)
T ss_pred HH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC-cccChhH--HHHHHHHHHHHh
Confidence 11 22234445566777888888877777654422 3332222 345556666664
No 426
>PRK00420 hypothetical protein; Validated
Probab=48.65 E-value=7.3 Score=30.56 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=9.7
Q ss_pred cCCCCCCcccccCC
Q 015939 46 SGHDTCPATMQILS 59 (398)
Q Consensus 46 ~~~~~CP~~~~~l~ 59 (398)
+|...||.|++.+.
T Consensus 38 ~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 38 DGEVVCPVHGKVYI 51 (112)
T ss_pred CCceECCCCCCeee
Confidence 35667898887654
No 427
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=48.44 E-value=2e+02 Score=25.72 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=80.2
Q ss_pred hHHHHHHHh-cCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH
Q 015939 181 LPLFLEILR-EGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ 258 (398)
Q Consensus 181 i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 258 (398)
++.|+.-+. ..+++.+.....+|..++.++ ... .-++..|..+.+.+ +.+...-+.+.+..+-..++-..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~------~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV------PPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch------hHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCchHH-
Confidence 344555343 448888888999999998886 222 33556667777666 55454455566666544333221
Q ss_pred HHHcCChHHHHHH-----hc---ccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH-hccChhHHHHHHH
Q 015939 259 LVELGMVQILTRI-----LS---DSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV-MKVGKTAREDAVV 329 (398)
Q Consensus 259 ~v~~g~v~~Lv~l-----L~---~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l-~~~~~~~~~~a~~ 329 (398)
+.+..++.. .. +.+...+..-.....++.++....++ - ...++.+..++ ...++.++..|+.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~--g---~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH--G---VDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh--H---HHHHHHHHHHHhccccHHHHHHHHH
Confidence 222322322 11 11112233333345666666633321 1 13567788888 6788999999999
Q ss_pred HHHHhhc
Q 015939 330 VIWSMCC 336 (398)
Q Consensus 330 ~L~~l~~ 336 (398)
.|..+|.
T Consensus 145 ~l~~Lc~ 151 (234)
T PF12530_consen 145 ALAPLCE 151 (234)
T ss_pred HHHHHHH
Confidence 9999995
No 428
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.49 E-value=4.4 Score=21.98 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=3.7
Q ss_pred CCCCcccc
Q 015939 49 DTCPATMQ 56 (398)
Q Consensus 49 ~~CP~~~~ 56 (398)
.+||.|+.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555544
No 429
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.03 E-value=16 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=11.8
Q ss_pred ccccCccccC----CCceecC-CCcccchh
Q 015939 14 FRCPISLDVM----KSPVSLC-TGVTYDRS 38 (398)
Q Consensus 14 ~~Cpi~~~~~----~dPv~~~-~g~~~~r~ 38 (398)
.+||-|+.=| ++|++-| ||.+|...
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 3466665332 3454444 55444443
No 430
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=46.27 E-value=12 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=14.3
Q ss_pred ccccCccccC----CCceecC-CCcccchh
Q 015939 14 FRCPISLDVM----KSPVSLC-TGVTYDRS 38 (398)
Q Consensus 14 ~~Cpi~~~~~----~dPv~~~-~g~~~~r~ 38 (398)
.+||-|+.=| ++|++-| ||.+|...
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 4577776544 4555555 66555544
No 431
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=46.11 E-value=2.1e+02 Score=28.80 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH--------------HHHHHHhhccCcHHHHHHHHhc-cChhH
Q 015939 259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS--------------EGRLALSEEASCAGRVVERVMK-VGKTA 323 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~--------------~~~~~i~~~~g~v~~Lv~~l~~-~~~~~ 323 (398)
+.+.+.|+.|+.+|. ++.+..++.+|..+|+.+.... .-...+. .+-.|..|+..+.. .....
T Consensus 58 L~~q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~-S~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 58 LAEQNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLV-SEETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHhCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHh-ChHHHHHHHHHHhcCCCcch
Confidence 347899999999997 5667889999999988875411 2223444 45788888888874 44777
Q ss_pred HHHHHHHHHHhhccC
Q 015939 324 REDAVVVIWSMCCVY 338 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~ 338 (398)
-.+++.++..|-...
T Consensus 136 lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 136 LVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888888876543
No 432
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=45.96 E-value=91 Score=26.87 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
.-.+|.+++=|.......+.-|...+..|... ...+..=+- ...+.+|-+.|.+. ++++...++.+|..|....
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 34688888888888777778888888877666 333333233 66777777888887 9999999999999996543
No 433
>PRK05978 hypothetical protein; Provisional
Probab=45.31 E-value=14 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=9.9
Q ss_pred CCCCCcccccCCCC
Q 015939 48 HDTCPATMQILSTK 61 (398)
Q Consensus 48 ~~~CP~~~~~l~~~ 61 (398)
+..||.|++.+...
T Consensus 52 ~~~C~~CG~~~~~~ 65 (148)
T PRK05978 52 VDHCAACGEDFTHH 65 (148)
T ss_pred CCCccccCCccccC
Confidence 55788888777644
No 434
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=44.90 E-value=1.5e+02 Score=23.31 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=31.0
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVEL 262 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~ 262 (398)
+|+.|+.=|.++ ++++...|+.+|...+..+..-..++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 578888888888 7888899999999888777655555543
No 435
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=44.78 E-value=5.3 Score=25.24 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=15.1
Q ss_pred CCCcccchhHHHHHHhcCCCCCCcccc
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
.|||+|+... ...+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 5788887532 111223457999987
No 436
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.06 E-value=2.2e+02 Score=30.06 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 192 NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 192 ~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
.+..|..+..+|..+... +.....|.. ..+++-|+++|..+.+..+...|+.+|.-|--
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~-t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQ-TPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhc-ChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 457788899999988776 777777877 78999999999987788888888888887743
No 437
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=43.99 E-value=32 Score=21.81 Aligned_cols=39 Identities=10% Similarity=0.351 Sum_probs=19.4
Q ss_pred ccCccccCCCceecC---CCcccchhHHHHHHhcCC-CCCCcc
Q 015939 16 CPISLDVMKSPVSLC---TGVTYDRSSIQHWLESGH-DTCPAT 54 (398)
Q Consensus 16 Cpi~~~~~~dPv~~~---~g~~~~r~~i~~~~~~~~-~~CP~~ 54 (398)
|-+|.++..-=+.=+ |+-.+=..|++++|.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 345555544444433 777788889999987533 369986
No 438
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=43.92 E-value=13 Score=22.87 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=8.0
Q ss_pred CCCCCcccccC
Q 015939 48 HDTCPATMQIL 58 (398)
Q Consensus 48 ~~~CP~~~~~l 58 (398)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 45799998743
No 439
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.79 E-value=62 Score=25.46 Aligned_cols=41 Identities=17% Similarity=0.028 Sum_probs=33.6
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS 303 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~ 303 (398)
+.-+|+.|+.-|. +++++|+..|+.+|...+..++..+.++
T Consensus 6 ~~w~i~lLv~QL~--D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 6 EDWGIELLVTQLY--DPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 3447899999994 5788999999999999999886666665
No 440
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.77 E-value=17 Score=37.89 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcC----CCCCCcccccCCCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG----HDTCPATMQILSTK 61 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~----~~~CP~~~~~l~~~ 61 (398)
..||-|+.. .+-|+.||..| | ...||.|+..+...
T Consensus 2 ~~Cp~Cg~~------n~~~akFC~~C-------G~~l~~~~Cp~CG~~~~~~ 40 (645)
T PRK14559 2 LICPQCQFE------NPNNNRFCQKC-------GTSLTHKPCPQCGTEVPVD 40 (645)
T ss_pred CcCCCCCCc------CCCCCcccccc-------CCCCCCCcCCCCCCCCCcc
No 441
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=43.62 E-value=2.9e+02 Score=26.17 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=104.4
Q ss_pred HHHHHHHhhhccCCcHHHHHHHHHHHHhhhc-ccchHHHhhHhhhccCC-ChHHHHHHHhcC----C---------hhhH
Q 015939 132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVN-ENGVKEKLNRLILNTYN-CLPLFLEILREG----N---------LDSK 196 (398)
Q Consensus 132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~-~~~~~~~~~~~il~~~g-~i~~Lv~lL~~~----~---------~~~~ 196 (398)
...+-+.|.+ .. ......+++.|..+.. +.... .+.++..-+ -.+.+..++... . ..+|
T Consensus 58 ~k~lyr~L~~-~~--~~~~~~~LrLL~~iv~f~~g~~---a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLSS-SK--PSLTNPALRLLTAIVSFDGGAL---AREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhCc-Cc--HHHHHHHHHHHHHHHccCCHHH---HHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 4455566665 22 3445688888888887 43332 233233222 234455555211 1 2788
Q ss_pred HHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH-hcCCc----chHHHHHHcCChHHHH
Q 015939 197 IGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT-LSVYR----SVKAQLVELGMVQILT 269 (398)
Q Consensus 197 ~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~-Ls~~~----~~~~~~v~~g~v~~Lv 269 (398)
...+..+..+... +..+..+....+.+..+.+-|..+ ++++....+.+|.. +..+. ..|..+.....+..|.
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~ 210 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLA 210 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHH
Confidence 8888887766554 556666665578899999999986 88999999999994 43333 4566677778999999
Q ss_pred HHhcccCcch----hhHHHHHHHHHHHhCCHH
Q 015939 270 RILSDSRTQI----LTVEKSIKMLSIVATCSE 297 (398)
Q Consensus 270 ~lL~~~~~~~----~~~~~al~~L~~La~~~~ 297 (398)
.+-.. .++ .+.+.+-..|..+|.++.
T Consensus 211 ~Ly~~--~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 211 SLYSR--DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHhcc--cCCcccchHHHHHHHHHHHHhcCCC
Confidence 97743 444 888999999999997553
No 442
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=42.32 E-value=24 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
+..|.||.|+.-+ ||.- ..+ ....||.|+.+|...+
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-----A~~-~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-----AME-YGFRCPQCGEMLEEYD 150 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-----Hhh-cCCcCCCCCCCCeecc
Confidence 4567898876322 2332 222 3678999999988765
No 443
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.93 E-value=23 Score=38.33 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=27.9
Q ss_pred cccccCccccCCCceecCCCc-----ccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGV-----TYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
...||-|+....-..=-.||. .||..| .+.. +...||.|+.......
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPYS 677 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCccc
Confidence 346777777752221123663 488888 2221 3467999998876543
No 444
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=8.6 Score=35.47 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=20.3
Q ss_pred ecCCCcccchhHHHHHHhcCCCCCCccccc
Q 015939 28 SLCTGVTYDRSSIQHWLESGHDTCPATMQI 57 (398)
Q Consensus 28 ~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~ 57 (398)
+++|.|.||.+|-..- ..+.||.|-..
T Consensus 106 mIPCkHvFCl~CAr~~---~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSD---SDKICPLCDDR 132 (389)
T ss_pred ccccchhhhhhhhhcC---ccccCcCcccH
Confidence 6899999999994332 25689999654
No 445
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=41.70 E-value=1e+02 Score=29.45 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=59.5
Q ss_pred CChHHHHHHHhcC-------ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---------cCHHHHHHH
Q 015939 179 NCLPLFLEILREG-------NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---------EDQALNDAI 242 (398)
Q Consensus 179 g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---------~~~~~~~~a 242 (398)
..+|.++.++..+ +.........++..|..++......-- +..++.++.++-.. +...++..|
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~A 288 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYA 288 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHH
Confidence 4578888777644 455566777888888888765544433 66888888766322 234788899
Q ss_pred HHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 243 LSILITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+..|..++..-.+...-...-.+..+.+.+.+
T Consensus 289 A~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 289 ARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 99999887432221111222244466666643
No 446
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.89 E-value=13 Score=27.62 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=10.8
Q ss_pred cchhHHHHHHhc
Q 015939 35 YDRSSIQHWLES 46 (398)
Q Consensus 35 ~~r~~i~~~~~~ 46 (398)
|||.|+.+|...
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 447
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=40.88 E-value=4.5e+02 Score=27.61 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=109.3
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV 255 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 255 (398)
..+++|.|+++....+..+|. .+|..+-.. +-.-..+.. ..++|.+..-+.+. ++-+++..+..+..|+.--..
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~---~LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRL---LLLQYIEKYIDHLTKQILN-DQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred ccchhhhHHHHhcCcchHHHH---HHHHhHHHHhhhcCHHhhc-chhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence 346899999999999988886 344444433 233344555 57788888878777 888999999999988653222
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC--HHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC--SEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~--~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
+ ...-..+..+.++- ++.++.++-+..-+|..++.. +..|..+. +......+++.-...+..++..++.
T Consensus 403 ~--~Ln~Ellr~~ar~q--~d~~~~irtntticlgki~~~l~~~~R~~vL-----~~aftralkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQ--PDEHGGIRTNTTICLGKIAPHLAASVRKRVL-----ASAFTRALKDPFVPARKAGVLALAA 473 (690)
T ss_pred h--hhcHHHHHHHHhhC--ccccCcccccceeeecccccccchhhhcccc-----chhhhhhhcCCCCCchhhhhHHHhh
Confidence 2 11111233333333 356777888888777777763 23333333 2233345666666677777777766
Q ss_pred hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
....-...+ +...++|.+.-+.-.. +..+|..|-+.+..+-.
T Consensus 474 t~~~~~~~~-----va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 474 TQEYFDQSE-----VANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccccchhh-----hhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 554322111 2233445444444333 45666666665554433
No 448
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.05 E-value=2.9e+02 Score=25.14 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=56.9
Q ss_pred cCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCC
Q 015939 177 TYNCLPLFLEILREG--NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDY-LKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
-.|-+..|.+++.+. +.-+|..|..+|..++.. +..|..+.+ .+..++.. +... +..+...-+..+..|...
T Consensus 109 ~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~---~f~~ll~~~l~~~-~~~~~~~Lv~~~~dL~~~ 184 (249)
T PF06685_consen 109 GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ---YFRELLNYFLERN-PSFLWGSLVADICDLYPE 184 (249)
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHhccC-chHHHHHHHHHHHhcCHH
Confidence 457788888888876 677899999999998876 667777754 35555554 4443 333344444555555432
Q ss_pred c--chHHHHHHcCChHHH
Q 015939 253 R--SVKAQLVELGMVQIL 268 (398)
Q Consensus 253 ~--~~~~~~v~~g~v~~L 268 (398)
. +..+++.+.|.|+.-
T Consensus 185 EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 185 ELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HhHHHHHHHHHcCCCCcc
Confidence 2 455666677777663
No 449
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=38.96 E-value=31 Score=27.95 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=31.7
Q ss_pred cccccCccccCCC--ce-ecCCC------cccchhHHHHHHhcCCCCCCccccc
Q 015939 13 LFRCPISLDVMKS--PV-SLCTG------VTYDRSSIQHWLESGHDTCPATMQI 57 (398)
Q Consensus 13 ~~~Cpi~~~~~~d--Pv-~~~~g------~~~~r~~i~~~~~~~~~~CP~~~~~ 57 (398)
..-|.||.+-..+ =| .+++| |-||..|+.+|-. .....|.=|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccce
Confidence 4569999998888 33 35666 5689999999964 34567776544
No 450
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=38.48 E-value=11 Score=20.40 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=11.9
Q ss_pred ccccCccccCCCceec
Q 015939 14 FRCPISLDVMKSPVSL 29 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~ 29 (398)
|.|.+|...|.++..+
T Consensus 1 ~~C~~C~~~f~s~~~~ 16 (25)
T PF12874_consen 1 FYCDICNKSFSSENSL 16 (25)
T ss_dssp EEETTTTEEESSHHHH
T ss_pred CCCCCCCCCcCCHHHH
Confidence 5688888888877544
No 451
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.45 E-value=31 Score=26.80 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=30.9
Q ss_pred ccccCccccCCCceecC--------C---CcccchhHHHHHHhc--------CCCCCCcccc
Q 015939 14 FRCPISLDVMKSPVSLC--------T---GVTYDRSSIQHWLES--------GHDTCPATMQ 56 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~--------~---g~~~~r~~i~~~~~~--------~~~~CP~~~~ 56 (398)
-+|-.|++-..|+.+.- | .-.||..|+..++.+ +.-.||.|+-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46888888777777543 3 557999999998753 2346999975
No 452
>PF12773 DZR: Double zinc ribbon
Probab=38.38 E-value=26 Score=22.73 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.5
Q ss_pred CCCCcccccCC
Q 015939 49 DTCPATMQILS 59 (398)
Q Consensus 49 ~~CP~~~~~l~ 59 (398)
..||.|+..+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 45777766543
No 453
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=38.33 E-value=11 Score=30.27 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.7
Q ss_pred cCCCCCCccc
Q 015939 46 SGHDTCPATM 55 (398)
Q Consensus 46 ~~~~~CP~~~ 55 (398)
.|.-+||+|+
T Consensus 42 dG~v~CPvC~ 51 (131)
T COG1645 42 DGEVFCPVCG 51 (131)
T ss_pred CCeEECCCCC
Confidence 3556688886
No 454
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.24 E-value=1.8e+02 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccc--cCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 194 DSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLA--EDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
.+|..|...+..+..+...-..+.. +.+++..|+++++.. -...++..|+.+|-.++....-...+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 4566666667666666555555554 355999999999865 34678999999999998765544443
No 455
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=38.09 E-value=3e+02 Score=24.65 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHHHHhhhccc-chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHH
Q 015939 145 SEIAVLESAVRVLNLIVNEN-GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLL 223 (398)
Q Consensus 145 ~~~~~~~~al~~L~~l~~~~-~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i 223 (398)
.+++.....+.+|-.++.++ .. .. -++..|..+.+.+..+.+.-+.+.+..+-..++-. . +.+
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~----~~------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f-----~~L 76 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVC----VP------PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-F-----PFL 76 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccc----hh------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-H-----HHH
Confidence 34556688888888888765 22 12 24666666666666666555556666555442211 1 334
Q ss_pred HHHHHH-----h---c-cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 224 SALFDY-----L---K-LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 224 ~~Lv~l-----L---~-~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
..++.. . . .....+..-..+..+..+|...+++ -...++.+.++|. .+.++.++..++..|..|+.
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~-~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLN-QSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHH
Confidence 444443 1 1 1123344455567788888766552 1235677788883 23577788899999999994
No 456
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=21 Score=35.60 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=29.4
Q ss_pred CCcccccCccccCCC-ceecCCCcccchhHHHHHHh
Q 015939 11 PNLFRCPISLDVMKS-PVSLCTGVTYDRSSIQHWLE 45 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~ 45 (398)
.....|.||-.-..+ .+.+.|||.||..|+...+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 345789999998886 66678999999999999875
No 457
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=37.90 E-value=17 Score=20.22 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.9
Q ss_pred ccccCccccCCCceecC
Q 015939 14 FRCPISLDVMKSPVSLC 30 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~ 30 (398)
|.|++|...|.+.-.+.
T Consensus 2 ~~C~~C~k~f~~~~~~~ 18 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLK 18 (27)
T ss_dssp CBBTTTTBBBSSHHHHH
T ss_pred CCcccCCCCcCCHHHHH
Confidence 77999998888865443
No 458
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.83 E-value=37 Score=33.89 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhH
Q 015939 117 GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSK 196 (398)
Q Consensus 117 ~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~ 196 (398)
+++.||..++....+|..+....++ +..+.+.+...+..++..... .+. +.+...+..--..+....++ .
T Consensus 234 e~e~n~~~iGk~~~~I~~~~~~ieS----~~hvVek~~~~~~s~~~~~~~----t~q-l~k~~l~~pTe~v~~l~~~~-I 303 (763)
T KOG4231|consen 234 EDEGNRSVIGKDENAIRQLISMIES----DQHVVEKACVALSSLARDVGV----TMQ-LMKCDLMKPTETVLKLSSPD-I 303 (763)
T ss_pred hCcccceeecccchhhhhhcccccc----cchhhcccccccccHHHHHHH----HHH-HHHHHhcCcchhhhhhcccc-H
Q ss_pred HHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhccc
Q 015939 197 IGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDS 275 (398)
Q Consensus 197 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~ 275 (398)
......+.-+....+...+-.- ...+..+.+.+-...++++++.+..++.+++.+.+||.... +...-..+++++ .
T Consensus 304 ~~l~~~v~~~~~~s~s~~Qe~~-~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i--~ 380 (763)
T KOG4231|consen 304 ISLLQVVVTLAFVSDSVSQEML-TKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLI--V 380 (763)
T ss_pred hhHHHHHhcCCchhhhHHhhhh-HHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHh--c
Q ss_pred CcchhhHHHHHHHHHHHhCCHHHHHHH
Q 015939 276 RTQILTVEKSIKMLSIVATCSEGRLAL 302 (398)
Q Consensus 276 ~~~~~~~~~al~~L~~La~~~~~~~~i 302 (398)
...+++-+.+..+|..+-.++--+..+
T Consensus 381 ~~~~~~~~~~~~a~~~~~~~eil~~~~ 407 (763)
T KOG4231|consen 381 TPEPRVNKAAARALAILGENEILRRSI 407 (763)
T ss_pred ccccccchhhhHHHHHhhhhHHHHhhc
No 459
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.71 E-value=3.5e+02 Score=29.52 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939 198 GSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 198 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~ 274 (398)
.+...|.-|..--+.-..+.+ . ++..++-++... .+.-+.-.+++.|+.|.........+|+.|+|..|+.+=+-
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~-~-g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~ 405 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHE-K-GVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV 405 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-h-CchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc
Confidence 444555555444333333333 2 344444444321 24446778899999999999999999999999988876531
Q ss_pred cCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc-----CcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh
Q 015939 275 SRTQILTVEKSIKMLSIVATCSEGRLALSEEA-----SCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349 (398)
Q Consensus 275 ~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~-----g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 349 (398)
+. ..--...+|.-|......-+.+...+ .+|..-+.+|.=+....+.++..... +|... +.+....=+
T Consensus 406 ---s~-~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~f--rail~~fd~ 478 (1516)
T KOG1832|consen 406 ---SE-TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFA-AAFVF--RAILDAFDA 478 (1516)
T ss_pred ---hh-hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHH-HHHHH--HHHHHHHhh
Confidence 11 11111123333333333222222111 23344444454455555566554443 23221 344455556
Q ss_pred cCCHHHHHHHHhh
Q 015939 350 SNGLTKLLLVMQS 362 (398)
Q Consensus 350 ~g~~~~Ll~~l~~ 362 (398)
..++.+|+.+++.
T Consensus 479 ~d~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 479 QDSLQKLLAILKD 491 (1516)
T ss_pred hhHHHHHHHHHHH
Confidence 7778888877753
No 460
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.62 E-value=3.9e+02 Score=25.90 Aligned_cols=132 Identities=8% Similarity=0.072 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc------
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN------ 176 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~------ 176 (398)
.+..|..-|+.+++..++.-..+.. +.+..++.-..+.+..+-+..+.|+..+..++...... +.- +.
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~---~~G-vt~~~~~v 300 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT---KSG-VTQTNELV 300 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B---TTB--S-B-TTS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc---cCC-cccccccc
Confidence 4566777788888664432222221 23444443332323334455688999988888755431 010 10
Q ss_pred ------cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 177 ------TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 177 ------~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
..-++|.|. -=.+..+-++..|++.+...... -.+..+ .++++.++..|.++ +.-+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l---~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQL---LQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHH---HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHH---HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 111122221 00023456677777777766554 123333 46899999999998 776777777654
No 461
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.25 E-value=1.7e+02 Score=23.39 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=42.7
Q ss_pred CChHHHHHHHhcCC----hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 179 NCLPLFLEILREGN----LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 179 g~i~~Lv~lL~~~~----~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
.++..+.++|.... .+....+..++......-+.... .. .+.++.++.+|.++ +.+.+|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i-~~-~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI-IN-SNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH-HS-SSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh-cc-HHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 45666666666543 67788888888887775433333 34 56999999999554 4577777765
No 462
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.99 E-value=5.8e+02 Score=27.74 Aligned_cols=180 Identities=16% Similarity=0.096 Sum_probs=90.4
Q ss_pred hccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcC-------chhHHHhhchhhHHHHHHHH-hccccCHHHHHHHHHH
Q 015939 175 LNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLD-------NESKRRVLETENLLSALFDY-LKLAEDQALNDAILSI 245 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-------~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~a 245 (398)
+.+...++++++++... +.+++.+|...|+.+... +....++.. .+.+..|+.. |..+......-..+..
T Consensus 186 l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s-~e~ieqLl~~ml~~~~s~s~lVs~i~v 264 (838)
T KOG2073|consen 186 LNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLES-PETIEQLLKIMLEDGTSLSVLVSGIIV 264 (838)
T ss_pred HhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcC-HHHHHHHHHHHccCCcchhhHHHHHHH
Confidence 55677899999999866 789999999999988765 246667766 7788887765 4433333333344444
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhccc--CcchhhHHHHHHHHHHHhCCHHHHHHHhhcc---CcHHHHHHHHhccC
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDS--RTQILTVEKSIKMLSIVATCSEGRLALSEEA---SCAGRVVERVMKVG 320 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~~---g~v~~Lv~~l~~~~ 320 (398)
+..+..... ..++. . ....++..+ ..++.+....++++.. .=..--++.... ..++.-...+...=
T Consensus 265 lI~ll~~~r---~~~~~--~-~~~~i~~q~~~~~d~~~~~~~l~~~~p---~L~dF~~lL~~~~~~~~l~tt~g~l~pPL 335 (838)
T KOG2073|consen 265 LISLLNPRR---DTVET--N-STTTILSQPPSERDPIVLNELLGAMEP---RLGDFVQLLLEPEKLDLLETTYGELEPPL 335 (838)
T ss_pred HHHhcCccc---ccccc--c-ceeeeecCCccccCccchHHHHHHHHH---HHHHHHHHhcCCccchhhhhhhhccCCCc
Confidence 333321110 00000 0 001222110 0122222222222211 111111111000 01111122222233
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE 365 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~ 365 (398)
+..|.+-+..+..+-.++ +.....+....|.+..++......+.
T Consensus 336 G~~Rlki~eliaelL~~~-~~~l~~el~~~~~~~r~lD~f~~y~~ 379 (838)
T KOG2073|consen 336 GFERLKIVELIAELLHCS-NMTLLNELRAEGIAERLLDLFFEYPW 379 (838)
T ss_pred chHHHHHHHHHHHHhccC-cHHHHhHHhhhhhHHHHHHHHHhcch
Confidence 455667777777766653 35667777778888777766655433
No 463
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=36.95 E-value=44 Score=18.57 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc
Q 015939 196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLK 231 (398)
Q Consensus 196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~ 231 (398)
|..|++.|..+.. ..++++|++.|+
T Consensus 2 R~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 5556666655543 456777777765
No 464
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.67 E-value=2.5e+02 Score=23.42 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=54.4
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcC-ChHHHHH-HhcccCcchhhHHHHHHHHHHHhCCH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELG-MVQILTR-ILSDSRTQILTVEKSIKMLSIVATCS 296 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g-~v~~Lv~-lL~~~~~~~~~~~~al~~L~~La~~~ 296 (398)
....+.|++.+.+. ++.+...++++++.|-.. .+..+. +.+ .+..++. ++....+...-++.++.++..++..|
T Consensus 72 ~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 72 DDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 46778888888887 688999999999998743 233332 222 3344444 55432223467788999999999988
Q ss_pred HHHHHHh
Q 015939 297 EGRLALS 303 (398)
Q Consensus 297 ~~~~~i~ 303 (398)
.....+.
T Consensus 149 ~~l~~lf 155 (168)
T PF12783_consen 149 QFLVDLF 155 (168)
T ss_pred hHHHHHH
Confidence 7666553
No 465
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=36.47 E-value=16 Score=20.40 Aligned_cols=9 Identities=22% Similarity=0.932 Sum_probs=5.0
Q ss_pred cccCccccC
Q 015939 15 RCPISLDVM 23 (398)
Q Consensus 15 ~Cpi~~~~~ 23 (398)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 466665554
No 466
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.38 E-value=14 Score=23.90 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=9.1
Q ss_pred cccCCCCcccccCccccC
Q 015939 6 LYIAVPNLFRCPISLDVM 23 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~ 23 (398)
....+| +-+||+|+..|
T Consensus 6 ~Ka~lp-~KICpvCqRPF 22 (54)
T COG4338 6 PKATLP-DKICPVCQRPF 22 (54)
T ss_pred cccccc-hhhhhhhcCch
Confidence 333444 44577766655
No 467
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=35.79 E-value=34 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.576 Sum_probs=27.8
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCccccc
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQI 57 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~ 57 (398)
.-+.||.++.+|-|-+ |-=-+.+|-+|... ||.-.+.
T Consensus 86 kIYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER 122 (238)
T PF10915_consen 86 KIYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTER 122 (238)
T ss_pred eEEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchh
Confidence 4568999999999874 33357899999874 8886554
No 468
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=35.65 E-value=1.7e+02 Score=28.48 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=59.3
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-|...++.+.-.|+.+|..+..+-+ ...+.++.......-|..++.+...++++++-..+++..++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg-~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCG-KRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc-hHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 45566667777899999999999988876544 57888888888888888888756678999999999998887
No 469
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.60 E-value=6.5 Score=36.75 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=33.8
Q ss_pred ccccCccccCC------CceecC--------CCcccchhHHHHHHhcCCCCCCcccc
Q 015939 14 FRCPISLDVMK------SPVSLC--------TGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 14 ~~Cpi~~~~~~------dPv~~~--------~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
-.|.||...+. -|-++. |||+.|..|+..-..+....||.|+.
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 46788877666 377777 99999999999987543478999875
No 470
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=35.29 E-value=13 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=13.6
Q ss_pred CCCcccchhHHHHHHhcCCCCCCcccc
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPATMQ 56 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~ 56 (398)
.|||+|+... ..-+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQ--KMSDDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEE--ecCCCCCCCCCCCCC
Confidence 4666666321 111123457999986
No 471
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=34.94 E-value=24 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=18.8
Q ss_pred eecCCCcccchhHHHHHHhcCCCCCCc
Q 015939 27 VSLCTGVTYDRSSIQHWLESGHDTCPA 53 (398)
Q Consensus 27 v~~~~g~~~~r~~i~~~~~~~~~~CP~ 53 (398)
|+++.|+.|++..|.+-+.. .||+
T Consensus 10 VtIp~G~KYdK~wLl~~iq~---~c~v 33 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS---HCSV 33 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH---HSSS
T ss_pred EEecCCcccCHHHHHHHHHH---HCCC
Confidence 79999999999999998754 4654
No 472
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=34.66 E-value=2.7e+02 Score=23.09 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=68.0
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhh--chhhHHHHHHHHhccc-------cC---HH------HHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVL--ETENLLSALFDYLKLA-------ED---QA------LNDAI 242 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~--~~~g~i~~Lv~lL~~~-------~~---~~------~~~~a 242 (398)
+..++..|.++...-|..|+.-|..+...++....+. .-..+++.|++++... .+ .. -...+
T Consensus 6 i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~ 85 (155)
T PF11640_consen 6 INSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSC 85 (155)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHH
Confidence 5567888888888888899999998877653221111 1245666777665422 00 11 13445
Q ss_pred HHHHHHhcC--CcchHHHHHHcCChHHHHHHhcccC--cchhhHHHHHHHHHHHhCCHHHHHHHh
Q 015939 243 LSILITLSV--YRSVKAQLVELGMVQILTRILSDSR--TQILTVEKSIKMLSIVATCSEGRLALS 303 (398)
Q Consensus 243 ~~aL~~Ls~--~~~~~~~~v~~g~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~~~~~~~~i~ 303 (398)
+.+|..+.. ....+.+-+.+ .+..++++|..+. --..+......+|..|...+-....+.
T Consensus 86 a~~lR~~ve~~~~~~k~kt~~~-Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~ 149 (155)
T PF11640_consen 86 ASALRLFVEKSNSRLKRKTVKA-LLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLS 149 (155)
T ss_pred HHHHHHHHHHHHhhcccchHHH-HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCc
Confidence 555555432 22222222332 6777888885322 112355667777777777666555543
No 473
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=33.81 E-value=2.1e+02 Score=22.08 Aligned_cols=68 Identities=7% Similarity=0.152 Sum_probs=46.0
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhc-----cccCHHHHHHHHHHHHH
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLK-----LAEDQALNDAILSILIT 248 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~-----~~~~~~~~~~a~~aL~~ 248 (398)
++..|..-|.+.++..+..|..+|..+..+ +.....+.. ..++..++++.. ...+..++..+..++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 567777777888899999999999999988 355566655 556666655311 11255667776666554
No 474
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=33.37 E-value=2.7e+02 Score=29.68 Aligned_cols=121 Identities=14% Similarity=0.086 Sum_probs=75.3
Q ss_pred CcHHHHHHHhhhc--cCC---cHHHHHHHHHHHHhhhc--ccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHH
Q 015939 130 GFVEAVFGVLNRK--RRS---EIAVLESAVRVLNLIVN--ENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKI 202 (398)
Q Consensus 130 g~v~~L~~lL~~~--~~~---~~~~~~~al~~L~~l~~--~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 202 (398)
|.++.+++.|... +++ +..-.+-|++.+.++.. ..... -.. +...=+++.++-.+++..--.+.+||..
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp---~an-~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP---AAN-VMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch---HHH-HHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 8999999999542 122 23344677777776654 21110 011 1122345666666677777889999999
Q ss_pred HHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH
Q 015939 203 LDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ 258 (398)
Q Consensus 203 L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 258 (398)
+..+..+ .++.-.. ..+.+.....|++. +-.++-.|+-||.-+-.+.+.-.+
T Consensus 484 is~~eeD--fkd~~il-l~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 484 ISTIEED--FKDNGIL-LEAYENTHNCLKNN-HLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHHHHh--cccchHH-HHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhchhhhHH
Confidence 9999554 3333222 45677778888886 666777788888777666543333
No 475
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.33 E-value=3.1e+02 Score=23.50 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHH
Q 015939 223 LSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLAL 302 (398)
Q Consensus 223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i 302 (398)
++.++++..+. +..++..|+..|.-.....=.-..- ++|.|+.|. .++++.+...|...+..+...-++--.-
T Consensus 10 l~~Il~~~~~~-~~~vr~~Al~~l~~il~qGLvnP~~----cvp~lIAL~--ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSS-DDSVRLAALQVLELILRQGLVNPKQ----CVPTLIALE--TSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHhcCCCChHH----HHhHhhhhh--CCCChHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred hhccCcHHHHHHHHhc--cChhH-----HHHHHHHHHHhhccCCChhHHHHHHhc
Q 015939 303 SEEASCAGRVVERVMK--VGKTA-----REDAVVVIWSMCCVYKDARVKEAVVNS 350 (398)
Q Consensus 303 ~~~~g~v~~Lv~~l~~--~~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~~~ 350 (398)
. -..++..-..+-.. ++... ...-..-|+.+...+ ...+...+..
T Consensus 83 ~-~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~--r~~R~~Fl~~ 134 (187)
T PF12830_consen 83 R-YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN--RKSRRKFLKS 134 (187)
T ss_pred H-HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc--cHhHHHHHHH
No 476
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=33.33 E-value=20 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=24.5
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
..+|..|.||-|+. ..=||.+ .+ ..++..||.|+.-..
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~~~h~~C~~CG~y~~ 53 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------NIAIITCGNCGLYTE 53 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------CcceEECCCCCCccC
Confidence 46788899999994 2333333 22 135678999986544
No 477
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.24 E-value=2.9e+02 Score=23.05 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=51.1
Q ss_pred hhCC-CC--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHH
Q 015939 78 HQLT-VP--EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAV 154 (398)
Q Consensus 78 ~~~p-~p--~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al 154 (398)
+++| -| .++...+++.|+.+... .....+.-|.+-..-+..-- .-+++ + .|-.+.+....+..--...|+
T Consensus 12 ~GipPlPL~a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~A-A~VKA-~---FL~~ia~g~~~~~~Is~~~Av 84 (154)
T PF11791_consen 12 LGIPPLPLNAEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEA-AYVKA-E---FLAAIAKGEISSPLISPAEAV 84 (154)
T ss_dssp TT-------HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HH-HHHHH-H---HHHHHHTTSS-BTTB-HHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChH-HHHHH-H---HHHHHHcCCccCCCcCHHHHH
Confidence 4554 34 67788899999887653 33344444443332211111 12222 2 222333221111111125666
Q ss_pred HHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 155 RVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 155 ~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
..|..|.. .--+..|+++|++.+.++...|+.+|.+-..
T Consensus 85 ~LLGtM~G---------------GYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 85 ELLGTMLG---------------GYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHTTS-S---------------STTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHhhccC---------------CCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 66654431 2248899999999999999999999985443
No 478
>PRK09169 hypothetical protein; Validated
Probab=33.13 E-value=9.9e+02 Score=29.27 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=69.2
Q ss_pred ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCC--
Q 015939 264 MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYK-- 339 (398)
Q Consensus 264 ~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~-- 339 (398)
.+..++.-|+...........+..+-..|...++.+..+- +-.|...+..|.+ .++..++.++.+...+.....
T Consensus 710 ~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~--aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~ 787 (2316)
T PRK09169 710 GVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMN--PQGLANSLNALSKWPQEPACQQAALLLAERLGSAGLPF 787 (2316)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCch
Confidence 3444444444333333333334444455777777777653 3456666666665 566666666666655544321
Q ss_pred -ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC-----CCCCCCCCCcc
Q 015939 340 -DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA-----SGLGNYQTKTA 393 (398)
Q Consensus 340 -~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~-----~~~~~~~~~~~ 393 (398)
.=.......-++++.+++..+...++.....-+...|+.|..+ .|....+++-+
T Consensus 788 ~~f~~~~laq~aNa~aR~~~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i 847 (2316)
T PRK09169 788 RTFTMAGLAQLANAMARLILKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDI 847 (2316)
T ss_pred hhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhH
Confidence 0012333334667777776665344556666667777777773 35555555543
No 479
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.93 E-value=38 Score=28.65 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.1
Q ss_pred hcCCCCCCcccccCCCC
Q 015939 45 ESGHDTCPATMQILSTK 61 (398)
Q Consensus 45 ~~~~~~CP~~~~~l~~~ 61 (398)
..|++.||.|++++.+.
T Consensus 151 aAGRP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 151 AAGRPPCPLCGEPLDPE 167 (171)
T ss_pred hCCCCCCCCCCCCCCCC
Confidence 34889999999998764
No 480
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.93 E-value=84 Score=29.33 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCc---------------hhHHHhhchhhHHHHHHHHhccc
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDN---------------ESKRRVLETENLLSALFDYLKLA 233 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~---------------~~~~~i~~~~g~i~~Lv~lL~~~ 233 (398)
..+..+++-|..++...|..|+.+|..++.+. .|...+.+ .|++++|+.+|+..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~-~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYE-CGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 45778888888888888999999999988763 44445555 68888888887654
No 481
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=24 Score=32.25 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=29.4
Q ss_pred CcccccCccccCCCceecC----CCcccchhHHHHHHh----cCCCCCCc
Q 015939 12 NLFRCPISLDVMKSPVSLC----TGVTYDRSSIQHWLE----SGHDTCPA 53 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~----~g~~~~r~~i~~~~~----~~~~~CP~ 53 (398)
+-++|.+|.+=++|-=-.. .+|.||=-|=.+.++ .|.-+||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 3489999999999864443 489999666555554 34446765
No 482
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.87 E-value=39 Score=30.16 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=26.8
Q ss_pred cccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|++|++.+..+ .+..|..|...+-.- ...||.|+.++.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 599999876322 334788898876322 357999987754
No 483
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.66 E-value=14 Score=28.27 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCCCCCcccccCCCCCCcccH
Q 015939 47 GHDTCPATMQILSTKEFVPNL 67 (398)
Q Consensus 47 ~~~~CP~~~~~l~~~~l~~n~ 67 (398)
|.+.||.|+.++...=+.-|.
T Consensus 48 G~t~CP~Cg~~~e~~fvva~~ 68 (115)
T COG1885 48 GSTSCPKCGEPFESAFVVANT 68 (115)
T ss_pred ccccCCCCCCccceeEEEecc
Confidence 567899999987754444443
No 484
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=31.39 E-value=3.8e+02 Score=23.94 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc------c------CHH-----HHHHHHHHHHHhcCCcchH
Q 015939 194 DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA------E------DQA-----LNDAILSILITLSVYRSVK 256 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~------~------~~~-----~~~~a~~aL~~Ls~~~~~~ 256 (398)
....-++..+..|...++....+.. .+.++.+...|..- . +++ +...=...|..||.+....
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~-~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSE-SKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHH-ccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 3344677888888888776666665 78888888877632 0 111 2223345678888888888
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH-HHHHHhccChhHHHHHHHHHHHhh
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGR-VVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~-Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
..+-+.|....+..+... .+.+.+. .-+|.+|--+-+ |-... |-+.|..++..++..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~-~~~~~l~---klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSL-SSRDDLL---KLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHcc-CchHHHH---HHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888899999999999963 2233333 335555533222 22222 233566788999999998887654
No 485
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.29 E-value=32 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=12.4
Q ss_pred CCCcccchhHHHHHHhcCCCCCCcc
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPAT 54 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~ 54 (398)
.|||.|...--.+- .+...||.|
T Consensus 33 ~Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc--cCCCCCCCC
Confidence 46777665332222 235568876
No 486
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=31.25 E-value=24 Score=19.53 Aligned_cols=13 Identities=15% Similarity=0.554 Sum_probs=9.7
Q ss_pred CcccccCccccCC
Q 015939 12 NLFRCPISLDVMK 24 (398)
Q Consensus 12 ~~~~Cpi~~~~~~ 24 (398)
..|.||+|..-|.
T Consensus 13 k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 13 KPYKCPYCGKSFS 25 (26)
T ss_dssp SSEEESSSSEEES
T ss_pred CCCCCCCCcCeeC
Confidence 4488999987764
No 487
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.99 E-value=6.9e+02 Score=26.81 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=46.5
Q ss_pred CcHHHHHHHhhhc-cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 130 GFVEAVFGVLNRK-RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 130 g~v~~L~~lL~~~-~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
.+...+..++++. ..-..-+.-+|.+++.++..-.. +. + ...+..|--++++.....|-.|.++|..++.
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~------r~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS------RE-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH------hh-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4455555555543 11123345667777777764322 22 2 2377788888888899999999999999987
Q ss_pred Cc
Q 015939 209 DN 210 (398)
Q Consensus 209 ~~ 210 (398)
..
T Consensus 312 ~~ 313 (865)
T KOG1078|consen 312 KH 313 (865)
T ss_pred hC
Confidence 63
No 488
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=30.75 E-value=44 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=14.2
Q ss_pred hcCCCCCCcccccCCCC
Q 015939 45 ESGHDTCPATMQILSTK 61 (398)
Q Consensus 45 ~~~~~~CP~~~~~l~~~ 61 (398)
..|.+.||.|+.++.+.
T Consensus 153 aAGRP~CPlCg~PldP~ 169 (177)
T TIGR03847 153 AAGRPPCPLCGRPIDPD 169 (177)
T ss_pred hCCCCCCCCCCCCCCCC
Confidence 35889999999999754
No 489
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=30.64 E-value=13 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=12.5
Q ss_pred CCCcccccCccccCCCc
Q 015939 10 VPNLFRCPISLDVMKSP 26 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dP 26 (398)
=+..|.||-|+.+|++.
T Consensus 14 GE~~lrCPRC~~~FR~~ 30 (65)
T COG4049 14 GEEFLRCPRCGMVFRRR 30 (65)
T ss_pred CceeeeCCchhHHHHHh
Confidence 34557899998888764
No 490
>COG1773 Rubredoxin [Energy production and conversion]
Probab=30.29 E-value=25 Score=23.68 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.9
Q ss_pred cCCCCcccccCccc
Q 015939 8 IAVPNLFRCPISLD 21 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~ 21 (398)
.++|++..||.|+.
T Consensus 31 edlPd~w~CP~Cg~ 44 (55)
T COG1773 31 EDLPDDWVCPECGV 44 (55)
T ss_pred hhCCCccCCCCCCC
Confidence 47899999999985
No 491
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.14 E-value=29 Score=20.75 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=6.7
Q ss_pred CCCCccccc
Q 015939 49 DTCPATMQI 57 (398)
Q Consensus 49 ~~CP~~~~~ 57 (398)
..||+|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 379998865
No 492
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.95 E-value=1.2e+02 Score=28.36 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc---------------chHHHHHHcCChHHHHHHhc
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYR---------------SVKAQLVELGMVQILTRILS 273 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~---------------~~~~~~v~~g~v~~Lv~lL~ 273 (398)
...+..++.-|... +...+..|+++|..++.+. .|...+.+.|++++|+++|.
T Consensus 59 ~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45677788888877 7778888888888885431 36666779999999999996
No 493
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=6.3e+02 Score=25.99 Aligned_cols=167 Identities=15% Similarity=0.119 Sum_probs=91.4
Q ss_pred ccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHh-------hchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939 176 NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRV-------LETENLLSALFDYLKLAEDQALNDAILSILIT 248 (398)
Q Consensus 176 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i-------~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 248 (398)
...|-+..||+-++..+.+++.++...|.....+....-.- .. .. ...|+.......++..++..+..|..
T Consensus 44 ~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLr-p~-y~dl~~iydkw~~~n~K~~LaDilS~ 121 (881)
T COG5110 44 MLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLR-PN-YLDLLEIYDKWLEGNKKRWLADILSA 121 (881)
T ss_pred hhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcC-CC-cchHHHHHhhccCcchhhHHHHHHHH
Confidence 35688999999999999999999999999887663222111 11 11 12233333332344566677777777
Q ss_pred hcCCc-c-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHH---HHhcc-Chh
Q 015939 249 LSVYR-S-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVE---RVMKV-GKT 322 (398)
Q Consensus 249 Ls~~~-~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~---~l~~~-~~~ 322 (398)
|+... + .+...... ++... -....+-.=.-++.|+. .|...-. -+... -..
T Consensus 122 l~m~yse~~kh~sL~Y-------Rl~g~---i~D~~~WGHeYvrhLa~-------------eI~ev~n~~~e~daps~~d 178 (881)
T COG5110 122 LCMVYSENGKHKSLAY-------RLEGN---IIDLKEWGHEYVRHLAG-------------EIAEVKNDQNEMDAPSFAD 178 (881)
T ss_pred HeeecccccchhhHHH-------Hhhcc---cCCHHHHHHHHHHHHHH-------------HHHHHhcchhhccCCchhH
Confidence 77533 2 22221110 11100 00111111111122221 1111111 01112 356
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHH
Q 015939 323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGI 367 (398)
Q Consensus 323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~ 367 (398)
.++.+..++--+-.++++.+....+++.|++++++..+..++-.+
T Consensus 179 t~~l~l~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~R 223 (881)
T COG5110 179 TRDLGLEIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNR 223 (881)
T ss_pred HHHHHHHHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhH
Confidence 677888888777777766788888999999999999887764433
No 494
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=29.28 E-value=99 Score=17.31 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc
Q 015939 194 DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL 232 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~ 232 (398)
.+|..|+.+|.++. . ..+++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~~----------~-~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG----------D-EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC----------C-HhHHHHHHHHhcC
Confidence 35777888887762 2 4456667766654
No 495
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.95 E-value=56 Score=21.62 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=23.7
Q ss_pred CcccccCccccCCCc-eecCCCcccchhHHHHH
Q 015939 12 NLFRCPISLDVMKSP-VSLCTGVTYDRSSIQHW 43 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~ 43 (398)
+=|.|-.|...+.+. ....-|.-||+.|..+-
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 457888888888877 45556888888887653
No 496
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.93 E-value=1.7e+02 Score=29.40 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=55.4
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHh
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITL 249 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~L 249 (398)
.++..|.+.|.+.+..++..|+.+|..+..+ +.....|.+ .+++..+|.+.+.. .+..++..++.+|..=
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~-k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVAS-KEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 4566677777777778888999988888888 445556766 89999999999887 7888999999888643
No 497
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=28.66 E-value=1.9e+02 Score=22.66 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred ChHHHHHHHh-cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 180 CLPLFLEILR-EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 180 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
.+|.+.+.|. +...+.+..+-.++..|+..-.....+.. ..++.++.-.... .. ++.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~--~l~~~i~~~~~~~-~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLN--ALMESILKNWTQE-TV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHH--HHHHHHHhccccc-hh--HHHHHHHHHHHHHcc
Confidence 4788888888 66889998888888888876333333222 2333333333332 11 477888888887544
No 498
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.50 E-value=1.6e+02 Score=21.68 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHH
Q 015939 220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD--SRTQILTVEKSIKMLSI 291 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~ 291 (398)
..++.|+..++.+..+.++++-.+.++..+....... ... |=+.+++++.. .+++..++..|..++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---IKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---HHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 5688899998776668899999999999987543321 233 45666666642 23467788888776653
No 499
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=28.37 E-value=65 Score=27.04 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.6
Q ss_pred CCCCCcccccCCCCC
Q 015939 48 HDTCPATMQILSTKE 62 (398)
Q Consensus 48 ~~~CP~~~~~l~~~~ 62 (398)
...||.|+.+|...+
T Consensus 128 ~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 128 NFTCPRCGAMLDYLD 142 (158)
T ss_pred CCcCCCCCCEeeecc
Confidence 678999999987665
No 500
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.34 E-value=1e+02 Score=30.95 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
...+-.+....+++++..|..++.+++.+.++|....-+...-..+++++-.+ .+++-+++..|+..+
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAIL 397 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHh
Done!