Query 015939
Match_columns 398
No_of_seqs 243 out of 2353
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 7.9E-33 2.7E-37 263.8 24.2 269 103-381 48-334 (354)
2 3nmz_A APC variant protein; pr 100.0 3.6E-31 1.2E-35 259.6 25.8 267 105-381 166-450 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 9.6E-29 3.3E-33 244.8 26.0 282 86-381 3-360 (457)
4 3nmz_A APC variant protein; pr 100.0 2.6E-28 8.7E-33 239.5 23.5 288 85-381 70-408 (458)
5 3l6x_A Catenin delta-1; cateni 100.0 1.1E-27 3.9E-32 240.0 23.9 284 85-382 48-385 (584)
6 3now_A UNC-45 protein, SD10334 100.0 9.2E-27 3.2E-31 240.9 28.9 281 85-381 421-737 (810)
7 3ul1_B Importin subunit alpha- 100.0 1.3E-26 4.5E-31 232.6 26.0 282 84-381 99-387 (510)
8 3l6x_A Catenin delta-1; cateni 100.0 6.9E-27 2.4E-31 234.4 22.9 296 85-397 90-496 (584)
9 3ul1_B Importin subunit alpha- 100.0 6.1E-27 2.1E-31 235.1 21.9 281 86-381 58-345 (510)
10 3now_A UNC-45 protein, SD10334 99.9 9.2E-27 3.2E-31 240.9 23.7 287 85-389 495-790 (810)
11 3nmw_A APC variant protein; AR 99.9 7.4E-27 2.5E-31 222.5 21.3 246 85-339 73-337 (354)
12 1xm9_A Plakophilin 1; armadill 99.9 1.2E-26 4E-31 229.8 23.5 281 85-382 44-450 (457)
13 3tpo_A Importin subunit alpha- 99.9 4.7E-26 1.6E-30 229.7 28.2 282 84-381 118-406 (529)
14 3tpo_A Importin subunit alpha- 99.9 6.2E-26 2.1E-30 228.8 25.6 282 85-381 162-449 (529)
15 4hxt_A De novo protein OR329; 99.9 4.3E-25 1.5E-29 200.1 24.9 237 130-381 2-241 (252)
16 4db8_A Armadillo-repeat protei 99.9 3.3E-25 1.1E-29 201.5 23.9 237 85-336 12-251 (252)
17 4b8j_A Importin subunit alpha- 99.9 2.8E-24 9.5E-29 216.5 30.5 280 85-381 117-400 (528)
18 4b8j_A Importin subunit alpha- 99.9 9E-25 3.1E-29 220.1 26.6 282 85-381 74-358 (528)
19 3tt9_A Plakophilin-2; cell adh 99.9 1.5E-25 5E-30 200.0 17.1 201 130-337 8-230 (233)
20 4hxt_A De novo protein OR329; 99.9 1.5E-24 5.1E-29 196.5 23.8 238 86-338 3-243 (252)
21 4db8_A Armadillo-repeat protei 99.9 7.7E-25 2.6E-29 199.1 21.3 237 130-381 12-251 (252)
22 1wa5_B Importin alpha subunit; 99.9 2.4E-23 8.1E-28 209.9 28.7 279 86-381 131-412 (530)
23 1wa5_B Importin alpha subunit; 99.9 1.8E-23 6E-28 210.9 26.3 280 85-381 87-370 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 9.9E-23 3.4E-27 200.4 29.6 279 85-381 64-347 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 1.7E-23 5.8E-28 210.2 24.2 279 85-381 59-339 (529)
26 2jdq_A Importin alpha-1 subuni 99.9 1E-22 3.4E-27 200.3 28.4 280 85-381 107-390 (450)
27 2z6h_A Catenin beta-1, beta-ca 99.9 3.9E-23 1.3E-27 213.2 24.7 279 85-381 56-336 (644)
28 4db6_A Armadillo repeat protei 99.9 1.7E-22 6E-27 178.4 22.3 197 177-381 10-209 (210)
29 1jdh_A Beta-catenin; beta-cate 99.9 3E-22 1E-26 201.2 24.9 280 85-381 101-385 (529)
30 3tt9_A Plakophilin-2; cell adh 99.9 3.8E-23 1.3E-27 184.3 16.0 196 179-381 8-229 (233)
31 2z6h_A Catenin beta-1, beta-ca 99.9 2.2E-22 7.4E-27 207.6 23.0 277 85-381 14-292 (644)
32 2z6g_A B-catenin; FULL-length, 99.9 8.1E-22 2.8E-26 207.2 24.5 279 85-381 192-472 (780)
33 4db6_A Armadillo repeat protei 99.9 8.7E-22 3E-26 173.9 20.0 195 130-336 12-209 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 2.6E-21 8.9E-26 203.3 24.6 270 86-381 116-389 (780)
35 1wgm_A Ubiquitin conjugation f 99.9 6.1E-23 2.1E-27 157.7 7.6 78 2-80 11-89 (98)
36 2kre_A Ubiquitin conjugation f 99.9 8.1E-23 2.8E-27 157.6 7.2 75 5-80 21-95 (100)
37 2kr4_A Ubiquitin conjugation f 99.9 8.6E-23 2.9E-27 153.0 6.5 75 4-79 5-79 (85)
38 1xqr_A HSPBP1 protein; armadil 99.9 1.3E-20 4.6E-25 174.8 21.8 223 148-381 55-287 (296)
39 3opb_A SWI5-dependent HO expre 99.9 2.3E-20 7.7E-25 190.0 21.3 329 30-380 283-682 (778)
40 3opb_A SWI5-dependent HO expre 99.9 4.6E-20 1.6E-24 187.8 23.0 250 121-383 449-730 (778)
41 1xqr_A HSPBP1 protein; armadil 99.8 1.7E-19 5.7E-24 167.5 20.0 183 192-381 53-238 (296)
42 2f42_A STIP1 homology and U-bo 99.8 2.7E-21 9.1E-26 163.5 6.7 77 5-81 98-174 (179)
43 1t1h_A Gspef-atpub14, armadill 99.8 1.1E-20 3.8E-25 139.8 6.1 74 7-80 2-75 (78)
44 2yu4_A E3 SUMO-protein ligase 99.8 6.6E-20 2.3E-24 140.2 5.2 71 9-79 3-82 (94)
45 2c2l_A CHIP, carboxy terminus 99.8 2.7E-19 9.2E-24 165.5 7.2 77 5-81 200-276 (281)
46 3grl_A General vesicular trans 99.8 9.9E-17 3.4E-21 159.5 24.8 289 84-381 20-342 (651)
47 3ztg_A E3 ubiquitin-protein li 99.7 2E-17 6.7E-22 126.2 7.3 74 5-78 5-81 (92)
48 2bay_A PRE-mRNA splicing facto 99.7 1.6E-17 5.4E-22 115.4 2.3 54 13-67 3-57 (61)
49 3fl2_A E3 ubiquitin-protein li 99.6 1.2E-16 4.3E-21 128.8 5.0 70 9-78 48-118 (124)
50 3htk_C E3 SUMO-protein ligase 99.6 1.1E-16 3.6E-21 141.5 4.1 70 9-78 177-250 (267)
51 1z6u_A NP95-like ring finger p 99.6 4.2E-16 1.4E-20 129.5 5.0 69 9-77 74-143 (150)
52 3l11_A E3 ubiquitin-protein li 99.6 3.6E-16 1.2E-20 124.3 2.7 77 1-77 3-86 (115)
53 2y43_A E3 ubiquitin-protein li 99.6 9.1E-16 3.1E-20 118.6 3.7 69 9-78 18-87 (99)
54 3m62_A Ubiquitin conjugation f 99.6 1.3E-15 4.5E-20 156.8 5.8 72 6-78 884-956 (968)
55 2egp_A Tripartite motif-contai 99.6 1.5E-16 5.3E-21 117.6 -1.5 67 5-71 4-76 (79)
56 2ecy_A TNF receptor-associated 99.5 5.8E-15 2E-19 105.0 5.7 58 6-63 8-65 (66)
57 2ysl_A Tripartite motif-contai 99.5 6E-15 2E-19 107.2 5.8 63 1-63 8-72 (73)
58 2ckl_A Polycomb group ring fin 99.5 2.7E-15 9.2E-20 117.8 3.9 71 7-78 9-84 (108)
59 3grl_A General vesicular trans 99.5 3.1E-12 1.1E-16 127.4 26.5 289 85-381 60-394 (651)
60 2yur_A Retinoblastoma-binding 99.5 7.9E-15 2.7E-19 106.8 5.9 62 5-66 7-71 (74)
61 1jm7_B BARD1, BRCA1-associated 99.5 1E-15 3.5E-20 122.0 1.0 68 8-78 17-85 (117)
62 3lrq_A E3 ubiquitin-protein li 99.5 2E-15 7E-20 116.7 2.7 69 9-77 18-87 (100)
63 2ecw_A Tripartite motif-contai 99.5 1.3E-15 4.5E-20 114.2 1.4 66 6-71 12-82 (85)
64 2djb_A Polycomb group ring fin 99.5 1.1E-14 3.7E-19 105.5 6.0 61 5-66 7-68 (72)
65 2ysj_A Tripartite motif-contai 99.5 1.1E-14 3.7E-19 102.5 5.3 54 1-54 8-63 (63)
66 2ecv_A Tripartite motif-contai 99.5 1.8E-15 6.3E-20 113.4 1.4 66 6-71 12-82 (85)
67 2csy_A Zinc finger protein 183 99.5 2.2E-14 7.4E-19 106.4 6.5 63 6-70 8-70 (81)
68 3hct_A TNF receptor-associated 99.5 8.5E-15 2.9E-19 116.8 4.1 70 8-77 13-82 (118)
69 2ckl_B Ubiquitin ligase protei 99.5 1E-14 3.5E-19 123.6 4.0 71 9-79 50-122 (165)
70 4ayc_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 116.9 4.8 68 10-80 50-117 (138)
71 1rmd_A RAG1; V(D)J recombinati 99.4 2.2E-14 7.5E-19 114.2 3.1 69 8-76 18-87 (116)
72 1jm7_A BRCA1, breast cancer ty 99.4 3.5E-14 1.2E-18 112.2 3.5 69 9-77 17-87 (112)
73 1g25_A CDK-activating kinase a 99.4 5.4E-14 1.8E-18 99.6 4.0 55 12-66 2-61 (65)
74 3knv_A TNF receptor-associated 99.4 3.2E-14 1.1E-18 116.7 2.8 68 8-75 26-102 (141)
75 3hcs_A TNF receptor-associated 99.4 2E-13 6.9E-18 116.2 4.8 70 8-77 13-82 (170)
76 2ecj_A Tripartite motif-contai 99.4 3.6E-13 1.2E-17 93.0 5.1 50 5-54 7-58 (58)
77 2ct2_A Tripartite motif protei 99.4 7.6E-13 2.6E-17 99.7 5.7 58 5-62 7-70 (88)
78 3ng2_A RNF4, snurf, ring finge 99.3 3.7E-13 1.3E-17 97.0 3.4 58 8-66 5-69 (71)
79 2d8t_A Dactylidin, ring finger 99.3 6E-13 2.1E-17 95.9 4.0 53 8-61 10-62 (71)
80 1e4u_A Transcriptional repress 99.3 1.3E-12 4.3E-17 95.5 5.5 57 7-63 5-65 (78)
81 2ea6_A Ring finger protein 4; 99.3 1.3E-12 4.5E-17 93.5 3.4 54 6-60 8-68 (69)
82 2ect_A Ring finger protein 126 99.3 3.8E-12 1.3E-16 93.5 5.0 60 6-66 8-70 (78)
83 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 92.1 2.2 54 12-66 2-62 (64)
84 3ltm_A Alpha-REP4; protein eng 99.2 1.1E-09 3.9E-14 95.9 19.4 186 129-381 18-203 (211)
85 3ltj_A Alpharep-4; protein eng 99.2 2.8E-09 9.7E-14 92.6 19.8 185 130-381 14-198 (201)
86 1bor_A Transcription factor PM 99.2 8.7E-12 3E-16 85.1 2.8 47 11-61 4-50 (56)
87 2ep4_A Ring finger protein 24; 99.2 2.8E-11 9.6E-16 87.8 5.5 59 3-62 5-66 (74)
88 2ecn_A Ring finger protein 141 99.2 9.2E-12 3.2E-16 89.3 2.9 54 7-62 9-62 (70)
89 1oyz_A Hypothetical protein YI 99.2 2.6E-09 8.8E-14 97.9 19.9 226 86-381 24-250 (280)
90 3ltm_A Alpha-REP4; protein eng 99.1 2.6E-09 8.8E-14 93.6 18.4 188 84-338 18-205 (211)
91 3ltj_A Alpharep-4; protein eng 99.1 4.8E-09 1.7E-13 91.1 20.0 185 84-335 13-197 (201)
92 1chc_A Equine herpes virus-1 r 99.1 2.9E-11 9.9E-16 86.2 4.3 48 12-60 4-52 (68)
93 2ecm_A Ring finger and CHY zin 99.1 3.7E-11 1.3E-15 81.7 4.1 47 12-59 4-54 (55)
94 2kiz_A E3 ubiquitin-protein li 99.1 9.1E-11 3.1E-15 83.8 5.7 54 7-61 8-64 (69)
95 1iym_A EL5; ring-H2 finger, ub 99.1 6.1E-11 2.1E-15 80.6 4.5 48 10-58 2-53 (55)
96 4ap4_A E3 ubiquitin ligase RNF 99.1 2.4E-11 8.3E-16 98.8 2.5 55 11-66 5-66 (133)
97 2l0b_A E3 ubiquitin-protein li 99.1 8.9E-11 3E-15 88.7 4.4 50 10-60 37-89 (91)
98 1oyz_A Hypothetical protein YI 99.1 7E-09 2.4E-13 95.0 18.1 225 85-377 54-278 (280)
99 4ic3_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 89.5 -0.5 48 8-60 19-67 (74)
100 4gmo_A Putative uncharacterize 99.0 7.2E-09 2.5E-13 107.1 18.7 194 181-380 36-257 (684)
101 2ecg_A Baculoviral IAP repeat- 99.0 3.5E-11 1.2E-15 87.4 0.7 51 6-61 18-69 (75)
102 1x4j_A Ring finger protein 38; 99.0 1.6E-10 5.5E-15 84.0 4.2 50 11-61 21-73 (75)
103 1v87_A Deltex protein 2; ring- 99.0 2.2E-10 7.5E-15 90.5 5.1 52 10-61 22-95 (114)
104 4fdd_A Transportin-1; heat rep 99.0 1.7E-08 5.9E-13 107.0 18.2 279 84-381 127-471 (852)
105 2y1n_A E3 ubiquitin-protein li 98.9 7.4E-10 2.5E-14 104.3 4.6 51 12-62 331-381 (389)
106 4gmo_A Putative uncharacterize 98.9 2.6E-08 8.7E-13 103.0 15.4 195 131-335 35-257 (684)
107 4fdd_A Transportin-1; heat rep 98.8 5E-08 1.7E-12 103.4 17.0 269 87-381 217-512 (852)
108 4ap4_A E3 ubiquitin ligase RNF 98.8 6.5E-10 2.2E-14 90.2 1.3 55 11-66 70-131 (133)
109 1ibr_B P95, importin beta-1 su 98.8 5.5E-08 1.9E-12 95.0 14.1 278 85-381 128-437 (462)
110 2ecl_A Ring-box protein 2; RNF 98.8 4E-09 1.4E-13 77.7 3.8 49 12-61 14-77 (81)
111 2yho_A E3 ubiquitin-protein li 98.8 5.5E-10 1.9E-14 81.7 -0.9 52 5-61 10-62 (79)
112 1b3u_A Protein (protein phosph 98.7 3.4E-07 1.2E-11 92.2 18.7 251 102-380 102-352 (588)
113 1wim_A KIAA0161 protein; ring 98.7 1.4E-09 4.9E-14 82.6 0.6 46 12-57 4-61 (94)
114 1b3u_A Protein (protein phosph 98.7 8.1E-07 2.8E-11 89.4 20.2 222 86-336 11-232 (588)
115 2vje_A E3 ubiquitin-protein li 98.7 6.4E-09 2.2E-13 72.7 3.2 48 11-59 6-56 (64)
116 2vje_B MDM4 protein; proto-onc 98.7 7E-09 2.4E-13 72.3 2.9 47 12-59 6-55 (63)
117 3t6p_A Baculoviral IAP repeat- 98.7 2.3E-09 7.7E-14 100.5 -0.7 48 8-60 290-338 (345)
118 2ea5_A Cell growth regulator w 98.6 2.4E-08 8.3E-13 70.6 4.4 48 8-60 10-58 (68)
119 3dpl_R Ring-box protein 1; ubi 98.6 3.4E-08 1.1E-12 76.3 4.4 46 13-59 37-100 (106)
120 2vgl_B AP-2 complex subunit be 98.5 1.2E-05 4.2E-10 81.5 23.0 260 89-379 125-417 (591)
121 2vgl_B AP-2 complex subunit be 98.5 6.4E-07 2.2E-11 91.0 13.3 231 130-381 121-382 (591)
122 1w63_A Adapter-related protein 98.5 4.4E-05 1.5E-09 77.8 25.5 252 87-381 109-379 (618)
123 1qgr_A Protein (importin beta 98.4 1.9E-05 6.5E-10 83.4 21.7 278 85-381 128-437 (876)
124 3b2a_A TON_1937, putative unch 98.4 9.6E-06 3.3E-10 70.3 15.0 184 179-382 33-219 (265)
125 1w63_A Adapter-related protein 98.4 4.4E-05 1.5E-09 77.8 22.0 250 87-381 144-414 (618)
126 1ibr_B P95, importin beta-1 su 98.3 8.2E-06 2.8E-10 79.4 15.4 273 88-381 4-288 (462)
127 2bpt_A Importin beta-1 subunit 98.3 6.1E-06 2.1E-10 87.0 15.3 265 100-381 382-668 (861)
128 2d8s_A Cellular modulator of i 98.3 6E-07 2.1E-11 65.4 4.9 51 11-61 13-71 (80)
129 3b2a_A TON_1937, putative unch 98.3 7.8E-06 2.7E-10 70.9 11.9 226 130-380 33-260 (265)
130 1qgr_A Protein (importin beta 98.3 2.2E-05 7.4E-10 83.0 17.9 275 88-381 175-479 (876)
131 4a0k_B E3 ubiquitin-protein li 98.2 1.3E-07 4.3E-12 74.1 0.0 45 14-59 49-111 (117)
132 2bpt_A Importin beta-1 subunit 98.2 2.9E-05 9.9E-10 81.8 18.0 278 86-381 499-811 (861)
133 2qk2_A LP04448P; mini spindles 98.2 1.3E-05 4.4E-10 71.5 12.5 184 182-381 18-205 (242)
134 1u6g_C TIP120 protein, CAND1; 98.2 6.4E-06 2.2E-10 90.7 11.7 270 85-381 6-284 (1230)
135 3dad_A FH1/FH2 domain-containi 98.1 6.7E-05 2.3E-09 69.0 15.2 192 81-283 114-325 (339)
136 1te4_A Conserved protein MTH18 98.1 4.9E-07 1.7E-11 72.8 0.4 121 177-333 10-130 (131)
137 2qk1_A Protein STU2; STU2P, XM 98.1 6E-05 2E-09 67.6 14.1 192 90-294 21-220 (249)
138 2vgl_A Adaptor protein complex 98.1 0.0017 5.9E-08 66.0 26.0 284 64-380 85-397 (621)
139 2vgl_A Adaptor protein complex 98.0 0.0016 5.5E-08 66.3 25.5 253 90-381 151-433 (621)
140 2qk2_A LP04448P; mini spindles 98.0 0.00015 5E-09 64.5 15.8 183 134-338 19-207 (242)
141 3dad_A FH1/FH2 domain-containi 98.0 0.00022 7.6E-09 65.5 16.2 185 183-371 122-326 (339)
142 1u6g_C TIP120 protein, CAND1; 97.9 5.5E-05 1.9E-09 83.3 11.4 233 85-339 48-287 (1230)
143 2qk1_A Protein STU2; STU2P, XM 97.8 0.00017 5.8E-09 64.6 12.0 192 184-381 21-220 (249)
144 1ho8_A Vacuolar ATP synthase s 97.7 0.0024 8.3E-08 61.6 18.7 225 103-336 184-476 (480)
145 1te4_A Conserved protein MTH18 97.7 7.5E-05 2.6E-09 59.7 6.3 119 130-291 12-130 (131)
146 2iw3_A Elongation factor 3A; a 97.6 0.0018 6E-08 68.6 16.9 250 105-381 70-324 (986)
147 1ho8_A Vacuolar ATP synthase s 97.4 0.094 3.2E-06 50.6 26.4 199 87-295 79-302 (480)
148 3vk6_A E3 ubiquitin-protein li 97.4 9.3E-05 3.2E-09 54.9 3.7 45 15-59 3-48 (101)
149 2ct0_A Non-SMC element 1 homol 97.4 0.00017 5.7E-09 51.3 4.8 48 14-61 16-65 (74)
150 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.00018 6.1E-09 49.0 4.4 48 12-59 5-58 (60)
151 2iw3_A Elongation factor 3A; a 97.3 0.004 1.4E-07 65.9 15.7 263 88-381 17-280 (986)
152 2db0_A 253AA long hypothetical 97.3 0.021 7.2E-07 47.7 16.2 177 177-380 30-209 (253)
153 2db0_A 253AA long hypothetical 97.2 0.084 2.9E-06 44.1 21.4 199 101-336 46-246 (253)
154 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.00038 1.3E-08 53.0 2.9 33 12-44 2-37 (101)
155 4ady_A RPN2, 26S proteasome re 97.0 0.26 9.1E-06 51.7 24.9 175 178-381 540-719 (963)
156 3oc3_A Helicase MOT1, MOT1; re 96.7 0.02 6.8E-07 56.1 13.3 246 89-377 178-432 (800)
157 4ady_A RPN2, 26S proteasome re 96.7 0.17 5.8E-06 53.2 21.1 166 181-381 509-676 (963)
158 3tjz_B Coatomer subunit gamma; 96.7 0.01 3.5E-07 55.7 10.9 235 64-333 79-350 (355)
159 2fv2_A RCD1 required for cell 96.7 0.034 1.2E-06 48.9 13.1 151 105-260 74-233 (268)
160 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.00034 1.2E-08 64.1 0.3 47 13-59 308-372 (381)
161 3ebb_A Phospholipase A2-activa 96.3 0.052 1.8E-06 49.7 12.8 193 181-378 105-303 (304)
162 3i2d_A E3 SUMO-protein ligase 96.2 0.0033 1.1E-07 58.4 4.1 63 13-75 249-315 (371)
163 2fv2_A RCD1 required for cell 96.2 0.19 6.6E-06 44.2 14.9 174 196-380 73-267 (268)
164 3tjz_B Coatomer subunit gamma; 95.9 0.93 3.2E-05 42.3 19.4 102 180-295 105-206 (355)
165 4fo9_A E3 SUMO-protein ligase 95.7 0.0086 2.9E-07 55.5 4.4 64 12-75 214-281 (360)
166 3ebb_A Phospholipase A2-activa 95.6 0.33 1.1E-05 44.4 14.6 189 86-286 104-298 (304)
167 4ffb_C Protein STU2; tubulin f 95.4 0.078 2.7E-06 47.7 9.8 191 180-382 11-213 (278)
168 4ffb_C Protein STU2; tubulin f 95.1 0.31 1E-05 43.7 13.0 151 179-339 55-215 (278)
169 2f31_A Diaphanous protein homo 94.3 0.76 2.6E-05 40.1 13.1 82 256-338 37-127 (233)
170 3eg5_B Protein diaphanous homo 94.3 1.4 4.8E-05 41.6 15.7 177 89-273 70-274 (383)
171 1wa5_C Importin alpha RE-expor 94.2 0.8 2.7E-05 48.8 15.3 222 146-381 418-670 (960)
172 3c2g_A SYS-1 protein; beta-cat 94.0 0.76 2.6E-05 42.3 12.3 160 199-362 263-449 (619)
173 4hat_C Exportin-1; heat repeat 93.7 0.69 2.4E-05 49.6 13.6 152 191-348 465-630 (1023)
174 2of3_A ZYG-9; multifunctional 93.6 0.8 2.7E-05 40.8 11.8 178 90-294 51-236 (266)
175 1wa5_C Importin alpha RE-expor 93.5 4.5 0.00015 42.9 19.7 226 99-335 417-669 (960)
176 1upk_A MO25 protein; transfera 93.4 4.3 0.00015 37.2 16.4 196 177-381 76-283 (341)
177 2f31_A Diaphanous protein homo 93.3 3.7 0.00013 35.7 17.2 149 220-371 42-218 (233)
178 2x1g_F Cadmus; transport prote 93.1 4.7 0.00016 42.8 19.0 218 99-336 476-722 (971)
179 3eg5_B Protein diaphanous homo 92.6 6.8 0.00023 36.8 18.1 146 220-368 108-281 (383)
180 3nw0_A Non-structural maintena 92.5 0.13 4.3E-06 45.3 4.9 48 14-61 181-230 (238)
181 2x1g_F Cadmus; transport prote 92.1 2.3 7.8E-05 45.2 15.0 180 191-381 476-663 (971)
182 3c2g_A SYS-1 protein; beta-cat 92.0 3.4 0.00012 38.1 13.5 120 148-274 258-378 (619)
183 2bnx_A Diaphanous protein homo 91.9 3.2 0.00011 39.1 14.1 78 262-339 46-132 (386)
184 2x19_B Importin-13; nuclear tr 91.6 15 0.00052 38.7 21.3 157 99-272 461-621 (963)
185 2of3_A ZYG-9; multifunctional 90.9 2.2 7.5E-05 38.0 11.1 100 130-249 132-234 (266)
186 2bnx_A Diaphanous protein homo 90.8 6.8 0.00023 36.8 15.2 183 90-281 9-219 (386)
187 2x19_B Importin-13; nuclear tr 90.1 9.7 0.00033 40.2 17.4 177 189-380 459-645 (963)
188 1weo_A Cellulose synthase, cat 89.5 0.53 1.8E-05 33.8 4.6 46 14-59 17-69 (93)
189 3ibv_A Exportin-T; karyopherin 88.2 26 0.00089 37.2 18.9 266 85-381 6-306 (980)
190 3u0r_A Apoptosis inhibitor 5; 88.2 6 0.0002 38.1 12.4 121 189-333 38-160 (507)
191 1x5b_A Signal transducing adap 88.0 1.3 4.6E-05 36.2 7.0 73 308-381 53-125 (163)
192 3ibv_A Exportin-T; karyopherin 85.8 40 0.0014 35.8 21.9 216 66-303 21-272 (980)
193 3mjh_B Early endosome antigen 85.4 0.13 4.4E-06 30.1 -0.4 18 13-30 5-22 (34)
194 3zyq_A Hepatocyte growth facto 85.4 1.5 5.1E-05 38.1 6.2 72 309-381 47-118 (226)
195 3u0r_A Apoptosis inhibitor 5; 85.2 11 0.00038 36.2 12.4 109 71-204 50-159 (507)
196 1upk_A MO25 protein; transfera 84.8 24 0.0008 32.3 20.4 243 125-381 74-332 (341)
197 3ldz_A STAM-1, signal transduc 83.7 2.8 9.5E-05 33.3 6.6 71 309-381 44-114 (140)
198 2jvx_A NF-kappa-B essential mo 83.6 0.31 1.1E-05 27.1 0.6 20 11-30 1-20 (28)
199 1dvp_A HRS, hepatocyte growth 82.1 2.4 8.3E-05 36.5 6.1 72 309-381 44-115 (220)
200 3g2s_A C-terminal fragment of 81.7 3.7 0.00013 33.0 6.7 73 308-381 49-126 (149)
201 3qml_C Protein SLS1, nucleotid 81.5 14 0.00047 33.3 10.8 150 135-293 27-188 (315)
202 1juq_A ADP-ribosylation factor 81.5 2.9 9.9E-05 34.5 6.1 73 308-381 51-128 (171)
203 2jne_A Hypothetical protein YF 80.9 0.087 3E-06 38.5 -2.9 40 14-59 33-72 (101)
204 3oc3_A Helicase MOT1, MOT1; re 80.8 1.3 4.5E-05 43.6 4.2 153 193-378 242-401 (800)
205 4hat_C Exportin-1; heat repeat 80.6 4.2 0.00014 43.6 8.5 99 235-336 466-569 (1023)
206 3m1i_C Exportin-1; heat repeat 80.5 16 0.00054 39.1 13.2 143 191-339 465-621 (1049)
207 1x5b_A Signal transducing adap 80.4 4.8 0.00016 32.8 7.0 70 180-250 53-124 (163)
208 1mhq_A ADP-ribosylation factor 80.1 3 0.0001 33.5 5.6 73 308-381 39-116 (148)
209 3m1i_C Exportin-1; heat repeat 79.7 34 0.0012 36.5 15.4 185 90-294 53-263 (1049)
210 3zyq_A Hepatocyte growth facto 77.4 5.3 0.00018 34.5 6.8 70 180-250 46-117 (226)
211 3ldz_A STAM-1, signal transduc 77.3 6.4 0.00022 31.2 6.7 69 180-250 43-113 (140)
212 1lsh_A Lipovitellin (LV-1N, LV 77.0 83 0.0028 33.7 18.3 132 180-333 392-540 (1056)
213 3qml_C Protein SLS1, nucleotid 76.0 36 0.0012 30.7 11.8 148 181-335 24-188 (315)
214 1lrv_A LRV, leucine-rich repea 76.0 1.3 4.3E-05 39.0 2.4 153 180-374 75-239 (244)
215 1lsh_A Lipovitellin (LV-1N, LV 75.5 40 0.0014 36.2 14.3 128 183-338 444-578 (1056)
216 3g2s_A C-terminal fragment of 74.7 9.9 0.00034 30.4 7.2 71 180-251 49-126 (149)
217 1dvp_A HRS, hepatocyte growth 74.0 7.6 0.00026 33.3 6.9 70 180-250 43-114 (220)
218 1elk_A Target of MYB1; superhe 73.2 8 0.00027 31.3 6.4 72 309-381 55-130 (157)
219 1juq_A ADP-ribosylation factor 72.4 11 0.00038 30.9 7.2 71 180-251 51-128 (171)
220 1mhq_A ADP-ribosylation factor 71.7 11 0.00037 30.2 6.8 71 180-251 39-116 (148)
221 6rxn_A Rubredoxin; electron tr 70.9 1.4 4.8E-05 27.6 1.0 14 9-22 26-39 (46)
222 2jrp_A Putative cytoplasmic pr 68.7 0.38 1.3E-05 34.2 -2.2 40 14-59 3-42 (81)
223 1lrv_A LRV, leucine-rich repea 67.8 3.6 0.00012 36.1 3.4 36 116-155 61-96 (244)
224 4rxn_A Rubredoxin; electron tr 66.5 1.9 6.6E-05 28.0 1.0 14 9-22 32-45 (54)
225 1e8j_A Rubredoxin; iron-sulfur 66.3 2.2 7.5E-05 27.5 1.2 15 8-22 31-45 (52)
226 3gjx_A Exportin-1; transport, 64.9 1.5E+02 0.0053 31.7 17.6 208 69-294 44-275 (1073)
227 2kkx_A Uncharacterized protein 64.1 7.6 0.00026 28.5 3.9 50 11-61 25-80 (102)
228 3l9t_A Putative uncharacterize 62.9 45 0.0015 28.8 9.2 144 181-349 73-218 (240)
229 1yk4_A Rubredoxin, RD; electro 62.4 2.6 8.8E-05 27.2 1.0 14 9-22 31-44 (52)
230 2ko5_A Ring finger protein Z; 61.9 4.7 0.00016 29.3 2.4 46 14-61 29-74 (99)
231 1vdy_A Hypothetical protein (R 61.3 19 0.00065 28.4 6.1 72 310-382 52-131 (140)
232 3gjx_A Exportin-1; transport, 61.3 62 0.0021 34.7 12.0 186 180-382 29-237 (1073)
233 2v3b_B Rubredoxin 2, rubredoxi 61.1 2.7 9.2E-05 27.5 0.9 16 9-24 32-47 (55)
234 1m3v_A FLIN4, fusion of the LI 60.5 5.2 0.00018 30.7 2.7 49 13-62 32-83 (122)
235 2kn9_A Rubredoxin; metalloprot 59.5 3.2 0.00011 29.5 1.1 20 8-27 55-74 (81)
236 3a6p_A Exportin-5; exportin-5, 58.0 2.1E+02 0.0072 31.0 21.5 225 87-338 13-278 (1204)
237 1dx8_A Rubredoxin; electron tr 56.9 3.5 0.00012 28.4 1.0 21 8-28 35-55 (70)
238 2xqn_T Testin, TESS; metal-bin 56.6 7.8 0.00027 29.7 3.2 47 12-61 29-76 (126)
239 2kre_A Ubiquitin conjugation f 54.1 8.5 0.00029 28.4 2.8 33 12-46 62-94 (100)
240 2o35_A Hypothetical protein DU 53.5 5 0.00017 29.4 1.3 11 35-45 43-53 (105)
241 3fyb_A Protein of unknown func 53.2 5.1 0.00017 29.3 1.3 11 35-45 42-52 (104)
242 1s24_A Rubredoxin 2; electron 53.0 4.5 0.00015 29.1 1.0 18 8-25 63-80 (87)
243 3a6p_A Exportin-5; exportin-5, 52.9 2.5E+02 0.0086 30.4 22.3 214 67-303 27-288 (1204)
244 1elk_A Target of MYB1; superhe 52.4 88 0.003 24.9 9.0 76 83-161 51-129 (157)
245 3gae_A Protein DOA1; UFD3, CDC 52.0 21 0.00071 31.3 5.5 142 133-294 59-217 (253)
246 3s4w_B Protein FACD2, fanconi 49.8 2.9E+02 0.01 30.2 21.8 230 131-381 193-467 (1323)
247 3pst_A Protein DOA1; protein d 48.4 63 0.0022 30.6 8.4 102 190-294 273-389 (425)
248 2xjy_A Rhombotin-2; oncoprotei 47.1 13 0.00043 28.7 3.0 48 12-60 28-78 (131)
249 3o2t_A Symplekin; heat repeat, 46.8 1.8E+02 0.0063 27.0 12.8 150 178-337 62-257 (386)
250 2cs3_A Protein C14ORF4, MY039 46.3 27 0.00091 24.5 4.0 44 11-54 13-64 (93)
251 1iml_A CRIP, cysteine rich int 43.4 26 0.00088 23.9 3.8 44 12-58 26-71 (76)
252 1wgm_A Ubiquitin conjugation f 41.8 13 0.00045 27.3 2.1 32 13-46 57-88 (98)
253 3uk3_C Zinc finger protein 217 40.5 12 0.0004 23.4 1.5 40 13-59 4-43 (57)
254 3l3f_X Protein DOA1, DOA1/UFD3 39.2 35 0.0012 31.5 5.1 140 136-294 171-326 (362)
255 2jtn_A LIM domain-binding prot 38.9 28 0.00097 28.5 4.1 47 12-61 86-132 (182)
256 3gs3_A Symplekin, LD45768P; he 38.5 2E+02 0.0068 25.0 14.0 105 179-293 53-172 (257)
257 4gzn_C ZFP-57, zinc finger pro 36.3 15 0.00051 24.1 1.5 42 12-60 3-44 (60)
258 3vhs_A ATPase wrnip1; zinc fin 36.3 9.4 0.00032 20.2 0.4 10 14-23 7-16 (29)
259 4atg_A TAF6; transcription, TF 36.2 88 0.003 26.1 6.6 114 179-293 40-161 (196)
260 1rut_X Flinc4, fusion protein 36.0 9.3 0.00032 31.8 0.5 49 12-61 31-82 (188)
261 3vld_A DNA mismatch repair pro 35.8 2.7E+02 0.0093 26.7 10.6 108 179-294 116-225 (500)
262 2rgt_A Fusion of LIM/homeobox 35.5 47 0.0016 26.8 4.8 47 12-61 32-78 (169)
263 2cup_A Skeletal muscle LIM-pro 35.3 20 0.00067 26.1 2.2 47 12-61 32-79 (101)
264 1wig_A KIAA1808 protein; LIM d 34.9 24 0.00081 24.0 2.5 32 13-44 31-64 (73)
265 2jmo_A Parkin; IBR, E3 ligase, 34.6 6.3 0.00022 27.8 -0.6 31 13-43 25-68 (80)
266 2epq_A POZ-, at HOOK-, and zin 34.5 23 0.0008 20.7 2.2 15 12-26 9-23 (45)
267 2eps_A POZ-, at HOOK-, and zin 33.6 20 0.00068 22.3 1.8 38 11-59 10-52 (54)
268 3l9t_A Putative uncharacterize 33.0 2.4E+02 0.0081 24.3 11.3 147 85-261 70-218 (240)
269 2dar_A PDZ and LIM domain prot 32.4 38 0.0013 23.9 3.4 24 15-38 27-50 (90)
270 2d8z_A Four and A half LIM dom 32.3 40 0.0014 22.3 3.3 32 13-44 31-63 (70)
271 2ctu_A Zinc finger protein 483 32.3 15 0.00052 24.2 1.1 36 12-61 17-52 (73)
272 2ct7_A Ring finger protein 31; 32.1 8.3 0.00028 27.6 -0.4 29 15-43 27-61 (86)
273 2ctd_A Zinc finger protein 512 31.7 31 0.0011 24.8 2.8 40 13-60 34-74 (96)
274 2d8x_A Protein pinch; LIM doma 31.7 43 0.0015 22.2 3.4 17 16-32 8-24 (70)
275 1bbo_A Human enhancer-binding 31.6 15 0.00052 22.8 1.0 35 14-59 2-40 (57)
276 2lcq_A Putative toxin VAPC6; P 31.4 9.7 0.00033 30.9 -0.1 24 29-59 136-159 (165)
277 3rru_A TOM1L1 protein; structu 31.0 37 0.0013 27.1 3.3 73 308-381 54-130 (152)
278 1ard_A Yeast transcription fac 30.6 18 0.00061 18.3 1.0 12 14-25 3-14 (29)
279 1x6e_A Zinc finger protein 24; 30.2 15 0.00051 24.5 0.7 42 11-59 12-53 (72)
280 1p7a_A BF3, BKLF, kruppel-like 29.5 19 0.00065 19.9 1.0 15 12-26 10-24 (37)
281 1znf_A 31ST zinc finger from X 29.4 18 0.00062 18.0 0.9 13 14-26 2-14 (27)
282 2kvh_A Zinc finger and BTB dom 29.4 16 0.00056 18.3 0.7 14 13-26 3-16 (27)
283 1klr_A Zinc finger Y-chromosom 29.3 21 0.00073 18.1 1.2 13 14-26 3-15 (30)
284 1x61_A Thyroid receptor intera 29.2 69 0.0024 21.2 4.1 32 14-45 34-66 (72)
285 2m0d_A Zinc finger and BTB dom 29.0 17 0.00056 18.6 0.7 14 13-26 3-16 (30)
286 3vld_A DNA mismatch repair pro 28.9 4E+02 0.014 25.6 11.2 143 180-334 74-223 (500)
287 2m0e_A Zinc finger and BTB dom 28.8 24 0.00081 17.7 1.3 12 14-25 3-14 (29)
288 2kdx_A HYPA, hydrogenase/ureas 28.8 24 0.00081 26.9 1.8 10 48-57 89-99 (119)
289 2jr6_A UPF0434 protein NMA0874 28.4 6.6 0.00022 26.8 -1.4 41 9-66 4-44 (68)
290 2cur_A Skeletal muscle LIM-pro 28.0 55 0.0019 21.6 3.4 32 13-44 31-63 (69)
291 2ytm_A Zinc finger protein 28 28.0 48 0.0016 19.3 2.9 16 12-27 11-26 (46)
292 1rik_A E6APC1 peptide; E6-bind 27.8 19 0.00064 18.3 0.8 13 14-26 3-15 (29)
293 1nyp_A Pinch protein; LIM doma 27.8 36 0.0012 22.3 2.4 23 15-37 7-29 (66)
294 3j21_g 50S ribosomal protein L 27.8 13 0.00043 23.8 -0.0 23 11-39 12-34 (51)
295 1x6a_A LIMK-2, LIM domain kina 27.8 54 0.0019 22.4 3.5 31 14-44 42-75 (81)
296 2js4_A UPF0434 protein BB2007; 27.2 11 0.00037 25.9 -0.4 41 9-66 4-44 (70)
297 2m0f_A Zinc finger and BTB dom 27.0 18 0.0006 18.3 0.5 13 14-26 3-15 (29)
298 2l4z_A DNA endonuclease RBBP8, 26.9 43 0.0015 25.5 2.9 37 14-59 62-99 (123)
299 1paa_A Yeast transcription fac 26.7 28 0.00095 17.7 1.4 13 14-26 3-15 (30)
300 2lv2_A Insulinoma-associated p 26.5 13 0.00046 26.3 -0.1 38 12-60 27-68 (85)
301 2lvu_A Zinc finger and BTB dom 32.4 14 0.00047 18.4 0.0 16 14-29 3-18 (26)
302 2elr_A Zinc finger protein 406 26.4 25 0.00085 19.1 1.2 15 12-26 8-22 (36)
303 3pwf_A Rubrerythrin; non heme 26.2 23 0.00078 29.0 1.3 22 30-59 143-164 (170)
304 2ee8_A Protein ODD-skipped-rel 26.0 28 0.00094 25.0 1.7 17 10-26 14-30 (106)
305 2lce_A B-cell lymphoma 6 prote 25.8 30 0.001 22.9 1.7 43 11-60 15-57 (74)
306 2hf1_A Tetraacyldisaccharide-1 25.7 5.6 0.00019 27.2 -2.1 39 11-66 6-44 (68)
307 4dvg_B Diaphanous protein; cyt 25.3 2.9E+02 0.0099 22.8 12.0 165 210-381 59-250 (353)
308 2jny_A Uncharacterized BCR; st 25.2 6.3 0.00022 26.8 -1.9 15 9-23 6-20 (67)
309 3gae_A Protein DOA1; UFD3, CDC 25.0 1.7E+02 0.006 25.2 6.9 131 196-337 71-218 (253)
310 3o2t_A Symplekin; heat repeat, 24.9 4.2E+02 0.014 24.5 18.6 190 84-294 24-256 (386)
311 2kvf_A Zinc finger and BTB dom 24.7 23 0.00078 17.8 0.7 13 13-25 3-15 (28)
312 2dj7_A Actin-binding LIM prote 24.7 43 0.0015 23.2 2.4 26 12-37 14-40 (80)
313 2lvt_A Zinc finger and BTB dom 29.8 16 0.00056 18.7 0.0 16 14-29 3-18 (29)
314 2gqj_A Zinc finger protein KIA 23.8 30 0.001 24.7 1.5 41 12-59 23-65 (98)
315 2els_A Zinc finger protein 406 23.6 23 0.00078 19.4 0.6 15 12-26 8-22 (36)
316 2l3k_A Rhombotin-2, linker, LI 23.3 51 0.0017 24.9 2.8 34 12-45 35-70 (123)
317 2lvr_A Zinc finger and BTB dom 28.9 17 0.00059 18.6 0.0 17 13-29 3-19 (30)
318 3gs3_A Symplekin, LD45768P; he 23.1 3.7E+02 0.013 23.3 13.8 129 194-335 30-172 (257)
319 1yc5_A NAD-dependent deacetyla 23.0 32 0.0011 29.9 1.7 32 30-61 126-158 (246)
320 2kvg_A Zinc finger and BTB dom 23.0 22 0.00075 17.9 0.4 13 13-25 3-15 (27)
321 1wyh_A SLIM 2, skeletal muscle 22.9 54 0.0019 21.8 2.6 29 14-42 34-63 (72)
322 2elq_A Zinc finger protein 406 22.8 26 0.00087 19.1 0.7 15 12-26 8-22 (36)
323 1llm_C Chimera of ZIF23-GCN4; 22.6 31 0.0011 23.8 1.3 42 12-60 2-43 (88)
324 1wii_A Hypothetical UPF0222 pr 22.2 31 0.0011 24.6 1.2 58 8-76 18-78 (85)
325 2cor_A Pinch protein; LIM doma 22.0 38 0.0013 23.3 1.6 38 15-61 17-54 (79)
326 2elt_A Zinc finger protein 406 22.0 26 0.00091 19.0 0.7 15 12-26 8-22 (36)
327 2elp_A Zinc finger protein 406 21.8 32 0.0011 18.8 1.0 15 12-26 8-22 (37)
328 2elx_A Zinc finger protein 406 21.3 28 0.00095 18.7 0.7 14 13-26 7-20 (35)
329 1x64_A Alpha-actinin-2 associa 21.3 54 0.0018 23.1 2.4 41 12-61 24-64 (89)
330 2dlq_A GLI-kruppel family memb 21.3 59 0.002 23.8 2.8 15 12-26 6-20 (124)
331 2kmk_A Zinc finger protein GFI 20.9 35 0.0012 22.9 1.3 13 14-26 2-14 (82)
332 1lko_A Rubrerythrin all-iron(I 20.7 28 0.00097 29.0 0.8 23 29-58 159-181 (191)
333 2yte_A Zinc finger protein 473 20.6 37 0.0013 19.2 1.2 15 12-26 9-23 (42)
334 2yt9_A Zinc finger-containing 20.5 29 0.001 24.2 0.8 16 12-27 6-21 (95)
335 2enh_A Zinc finger protein 28 20.5 43 0.0015 19.5 1.5 16 12-27 11-26 (46)
336 1ma3_A SIR2-AF2, transcription 20.4 38 0.0013 29.6 1.6 31 30-60 128-160 (253)
337 2elv_A Zinc finger protein 406 20.3 30 0.001 18.8 0.7 15 12-26 8-22 (36)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.9e-33 Score=263.79 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=232.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------cCCcHHHHHHHHHHHHhhhcccchHHHhhHhh
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------RRSEIAVLESAVRVLNLIVNENGVKEKLNRLI 174 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~i 174 (398)
....|++.|.+++.+ +++|+.|.+. |+++.|+.+|.+. ...+..++++|+++|.+|+.+++. +|..|
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~---~k~~i 122 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATL 122 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH---HHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH---HHHHH
Confidence 566899999999976 7899999999 9999999999631 112356789999999999987664 35653
Q ss_pred hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-
Q 015939 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV- 251 (398)
Q Consensus 175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~- 251 (398)
....|+||.|+.+|++++.++++.|+++|++|+.. +++|..+.+ .|++++|+++|....++++++.|+.+|+||+.
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 34567799999999999999999999999999984 578999987 89999999986443378899999999999998
Q ss_pred CcchHHHHH-HcCChHHHHHHhcccCcch--hhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939 252 YRSVKAQLV-ELGMVQILTRILSDSRTQI--LTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTAR 324 (398)
Q Consensus 252 ~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~ 324 (398)
+++++..++ ..|+++.|+++|++.+... ++++.|+++|++|+. ++++++.+. +.|+++.|+.+|.+++..++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHH
Confidence 668999998 7999999999996422111 589999999999995 899999888 57999999999999999999
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++|+++|++++.. +++.+..+++.|+++.|+.+|+++ ++++|+.|+++|..|..
T Consensus 281 ~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 281 SNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 9999999999964 378899999999999999999877 89999999999999998
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.6e-31 Score=259.65 Aligned_cols=267 Identities=17% Similarity=0.200 Sum_probs=230.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939 105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN 176 (398)
Q Consensus 105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~ 176 (398)
.+|++.|.+++. ++++|+.|.+. |++++|+.+|... ...+..++++|+++|.||+.+++. +|..+..
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~---~k~~i~~ 240 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATLCS 240 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc---cHHHHHH
Confidence 389999999964 49999999999 9999999999531 112356789999999999987664 3555333
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Cc
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YR 253 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~ 253 (398)
..|+||.|+.+|++++.++++.|+++|++|+.. +++|..+.+ .|++++|+++|....++++++.++.+|+||+. ++
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 567799999999999999999999999999984 578899987 89999999986443378899999999999998 77
Q ss_pred chHHHHH-HcCChHHHHHHhcccCcch--hhHHHHHHHHHHHh----CCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 254 SVKAQLV-ELGMVQILTRILSDSRTQI--LTVEKSIKMLSIVA----TCSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 254 ~~~~~~v-~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~La----~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
+++..++ ..|+++.|+++|.+.+... .+++.|+++|+||+ .++++++.+. +.|+++.|+.+|.+++..++++
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHH
Confidence 8999998 7999999999996422111 48999999999999 4889999988 5799999999999999999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|+++|++++.. +++.+..+++.|+++.|+.+|+++ ++++|+.|+++|..|..
T Consensus 399 A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 399 ACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 99999999964 378899999999999999999877 89999999999999987
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=9.6e-29 Score=244.79 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=233.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.+++.|++++.+ .+..|+..|++++.+++.++..+.+. |++|.|+.+|++ .+ ..+++.|+++|.+|+.+.+
T Consensus 3 ~l~~lv~~L~s~~~~--~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s-~~--~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEK--YQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRS-PN--QNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp CHHHHHHHHHSSCTH--HHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTS-SC--HHHHHHHHHHHHHHHSSCH
T ss_pred CHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCCH
Confidence 367899999988765 89999999999998888888899999 999999999998 43 4567999999999998644
Q ss_pred hHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc--------cc---
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK--------LA--- 233 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~--------~~--- 233 (398)
. +|.. +.+.|++|.|+++|+ +++.++++.|+++|.+|+.++++|..+.. |++++|+++|. +.
T Consensus 77 ~---~k~~-i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 77 T---NKLE-TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp H---HHHH-HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC------
T ss_pred H---HHHH-HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccch
Confidence 3 4666 779999999999999 88999999999999999999899998875 99999999993 22
Q ss_pred ----cCHHHHHHHHHHHHHhcCCcchHHHHHHc-CChHHHHHHhccc----CcchhhHHHHHHHHHHHhCCHH-------
Q 015939 234 ----EDQALNDAILSILITLSVYRSVKAQLVEL-GMVQILTRILSDS----RTQILTVEKSIKMLSIVATCSE------- 297 (398)
Q Consensus 234 ----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~-g~v~~Lv~lL~~~----~~~~~~~~~al~~L~~La~~~~------- 297 (398)
.++++++.|+++|+||+.+++++..+++. |+++.|+.+|++. ..+.++++.|+.+|++|+...+
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred hcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 24567779999999999988899999997 9999999999631 1356799999999999973211
Q ss_pred --------------------------------------------HHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHH
Q 015939 298 --------------------------------------------GRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIW 332 (398)
Q Consensus 298 --------------------------------------------~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~ 332 (398)
+.+.+. +.|+++.|+.+|.. .++..++.|+++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 112233 46789999999986 57899999999999
Q ss_pred HhhccCCCh--hHHHHHH-hcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 333 SMCCVYKDA--RVKEAVV-NSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 333 ~l~~~~~~~--~~~~~~~-~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+|+...... ...+.++ +.|+++.|+.+|+++ +.++|+.|+++|+.++.
T Consensus 310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence 999754321 2213344 689999999999887 89999999999999987
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=239.45 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHcCCC----------CchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcH----------HHHHHHhhhcc-
Q 015939 85 QEVRVWIEKIKSENE----------SENSCVDYLVKVAKFATGCEANRRFLASYGGFV----------EAVFGVLNRKR- 143 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~----------~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v----------~~L~~lL~~~~- 143 (398)
+-++.|++.|+..+. +.+.+.+|+++|.+++.+.+...+...+. |++ +.++.++.+..
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI-RVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHH-HHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 346788999986432 24688999999999999988877777777 777 66677776521
Q ss_pred CCc-----H-----HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhc-----------CChhhHHHHHHH
Q 015939 144 RSE-----I-----AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILRE-----------GNLDSKIGSIKI 202 (398)
Q Consensus 144 ~~~-----~-----~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~ 202 (398)
+.+ . +.+.+|+++|.|++.+. ++|.. +.+.|+++.|+.+|.. .+..++.+|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~----e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDE----EHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSH----HHHHH-HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCH----HHHHH-HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 111 1 11238999999997653 35777 7799999999999952 246789999999
Q ss_pred HHHhhcCch-hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC--cchHHHHHHcCChHHHHHHhcccCcch
Q 015939 203 LDSISLDNE-SKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY--RSVKAQLVELGMVQILTRILSDSRTQI 279 (398)
Q Consensus 203 L~~L~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~~v~~g~v~~Lv~lL~~~~~~~ 279 (398)
|.+|+.+++ ++..+....|+|++|+.+|+++ +++++..|+++|++|+.. ++++..+++.|+|+.|+++|. .+.++
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl-~s~~~ 301 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL-EVKKE 301 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT-TCCSH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh-cCCCH
Confidence 999998854 7777754367799999999988 899999999999999974 468899999999999999864 23578
Q ss_pred hhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh----hHHHHHHHHHHHhhcc-CCChhHHHHHHhcCCH
Q 015939 280 LTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK----TAREDAVVVIWSMCCV-YKDARVKEAVVNSNGL 353 (398)
Q Consensus 280 ~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~----~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~g~~ 353 (398)
.+++.|+.+|.||+. +++++..+....|+++.|+.+|..+++ .++++|+++|++|+.. .++++.+..+++.|++
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i 381 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence 999999999999999 889999998668999999999987654 4899999999999962 1236889999999999
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 354 TKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 354 ~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.|+.+|+++ +..+++.|+++|.+++.
T Consensus 382 ~~Lv~LL~~~-~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 382 QTLLQHLKSH-SLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHHHc
Confidence 9999999876 78999999999999984
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.1e-27 Score=240.02 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
..++.+++.|.+++.+ .+..|+..|++++..++.+|..+.+. |+||.|+.+|++ .+ ..++++|+++|.||+..+
T Consensus 48 ~~i~~LV~~L~s~~~~--~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s-~~--~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDA--VKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDH-PK--KEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGC-SS--HHHHHHHHHHHHHHTSSS
T ss_pred ccHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCC-CC--HHHHHHHHHHHHHHHccC
Confidence 4688999999987654 88899999999999889999999999 999999999998 44 567799999999999852
Q ss_pred -chHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc-----------
Q 015939 165 -GVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK----------- 231 (398)
Q Consensus 165 -~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~----------- 231 (398)
++ ||.. +.+.|+|+.|+.+|+++ +.++++.|+.+|++|+.++++|..|+. +++++|+++|.
T Consensus 122 ~~~---nk~~-I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 122 DQD---NKIA-IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp CHH---HHHH-HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----
T ss_pred CHH---HHHH-HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccc
Confidence 33 5777 77899999999999984 789999999999999999999999985 56999999872
Q ss_pred ------cccCHHHHHHHHHHHHHhcCCcc-hHHHHHHc-CChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHHH-
Q 015939 232 ------LAEDQALNDAILSILITLSVYRS-VKAQLVEL-GMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSEG- 298 (398)
Q Consensus 232 ------~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~-g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~~- 298 (398)
+..++++++.|+++|.||+...+ ++..|++. |+++.|+.+|++ ...+...++.|+++|+||+..-+.
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 11257899999999999998775 58888875 556899999963 124678999999999999975321
Q ss_pred -------------------------HHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCC--hhHHHHHHhc
Q 015939 299 -------------------------RLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKD--ARVKEAVVNS 350 (398)
Q Consensus 299 -------------------------~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~ 350 (398)
.+.+. +.++|+.|+.+|.. .++.++++|+++|++||..... ...+..+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~ 354 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354 (584)
T ss_dssp STTCCC--------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc
Confidence 11112 33557788999975 6899999999999999875310 1234455568
Q ss_pred CCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 351 NGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 351 g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
|+++.|+.+|.++ ++.+++.|+.+|+.|+..
T Consensus 355 ~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 355 KALSAIADLLTNE-HERVVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence 9999999999877 789999999999999983
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=9.2e-27 Score=240.87 Aligned_cols=281 Identities=12% Similarity=0.108 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-----------------------------hhh---hhhhhcCCcH
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-----------------------------ANR---RFLASYGGFV 132 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-----------------------------~~r---~~i~~~~g~v 132 (398)
+.++.|++.+++.+.. .+..|++.|.+++.+.+ .++ +.+++. |++
T Consensus 421 g~Ip~LV~LL~s~d~~--i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaV 497 (810)
T 3now_A 421 ASIHALMDLARGGNQS--CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GIT 497 (810)
T ss_dssp HHHHHHHHHHHTTCGG--GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THH
T ss_pred chHHHHHHHhCCCChH--HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCH
Confidence 4578899999887654 88899999999997542 122 678888 999
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh
Q 015939 133 EAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES 212 (398)
Q Consensus 133 ~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~ 212 (398)
|.|+.+|++ .+ ..++++|+++|.|++.+.+ +|.. +.+.|++|.|+.+|.+++...++.|+++|.+|+.+.+.
T Consensus 498 p~LV~LL~s-~s--~~vqe~Aa~aL~NLA~d~~----~r~~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 498 TALCALAKT-ES--HNSQELIARVLNAVCGLKE----LRGK-VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569 (810)
T ss_dssp HHHHHHHTC-CC--HHHHHHHHHHHHHHHTSHH----HHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcC-CC--HHHHHHHHHHHHHHcCCHH----HHHH-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence 999999998 44 4567999999999996533 4676 77999999999999999999999999999999876444
Q ss_pred HHHhhc--hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 213 KRRVLE--TENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 213 ~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
...+.. ..|++++|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.+|. +.++.+++.|+++|
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L 647 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCL 647 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 433321 25799999999986634445678999999999874 68889999999999999995 47889999999999
Q ss_pred HHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh-cCCHHHHHHHHhhcCcHHH
Q 015939 290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN-SNGLTKLLLVMQSENEGIV 368 (398)
Q Consensus 290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~g~~~~Ll~~l~~~~~~~~ 368 (398)
.||+.+++.+..+.+..|+++.|+.++...+..+++.|+++|++|+.++ +.....+++ .|+++.|+.+++++ +..+
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s--~~~~~~ii~~~g~I~~Lv~LL~s~-d~~v 724 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS--VKCCEKILAIASWLDILHTLIANP-SPAV 724 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC--HHHHHHHHTSTTHHHHHHHHHTCS-SHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHHcCCHHHHHHHHCCC-CHHH
Confidence 9999999999988854799999999999999999999999999999853 577788888 99999999999977 8999
Q ss_pred HHHHHHHHHHHhc
Q 015939 369 RKMCGDLVKVLGK 381 (398)
Q Consensus 369 k~~A~~lL~~l~~ 381 (398)
|+.|.++|.++..
T Consensus 725 q~~A~~aL~NL~~ 737 (810)
T 3now_A 725 QHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.3e-26 Score=232.62 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++.|++.|++++. .+.+.+|+++|.+++.++++++..+++. |+||.|+.+|++ .+ ..+++.|+++|.+++.+
T Consensus 99 ~G~ip~LV~lL~~~~~-~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s-~~--~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS-PH--AHISEQAVWALGNIAGD 173 (510)
T ss_dssp TTHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHHhC
Confidence 3468899999986653 2478899999999999999999999999 999999999988 44 56779999999999987
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCCh-----hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNL-----DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-----~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 238 (398)
.+. +|.. +.+.|+++.|+.+|...+. ..+..++++|.+++.+......+....|+++.|+++|.+. ++++
T Consensus 174 ~~~---~r~~-v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v 248 (510)
T 3ul1_B 174 GSA---FRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEV 248 (510)
T ss_dssp CHH---HHHH-HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHH
T ss_pred CHH---HHHH-HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHH
Confidence 655 3555 7799999999999986643 4577899999999998655544444478999999999998 8999
Q ss_pred HHHHHHHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHH
Q 015939 239 NDAILSILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
+..++++|.+|+...+++.. +++.|+++.|+++|. +.+..++..++.+|.+++. ++..+..+. +.|+++.|+.++
T Consensus 249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL 325 (510)
T 3ul1_B 249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CT
T ss_pred HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc--CCChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHh
Confidence 99999999999987765544 569999999999995 4788999999999999977 556666777 579999999999
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
...++.+++.|+++|.+|+..+ ++.+..+.+.|+++.|+.+++++ +..+|+.|+++|.++..
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 9999999999999999999854 68889999999999999999877 89999999999998875
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=6.9e-27 Score=234.38 Aligned_cols=296 Identities=13% Similarity=0.143 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
+.|+.|++.|.+++.+ .+..|+++|.+++.. ++.+|..|++. |+|+.|+.+|.+ .. +..++++|+.+|.+|+.+
T Consensus 90 G~Ip~LV~LL~s~~~~--vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s-~~-~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKE--VHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRK-AR-DMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp THHHHHHHGGGCSSHH--HHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHH-CC-SHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcC-CC-CHHHHHHHHHHHHHHhCC
Confidence 4688999999988765 899999999999985 68999999999 999999999997 32 345679999999999985
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHh------------------cCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILR------------------EGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLS 224 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~ 224 (398)
++ +|..|+ . ++++.|+++|. ..+.+++++|+++|++|+.+. +++..+++..|+++
T Consensus 165 ~~----~k~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~ 238 (584)
T 3l6x_A 165 DS----IKMEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238 (584)
T ss_dssp GG----GHHHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHH
T ss_pred ch----hhHHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHH
Confidence 54 477744 4 56999999872 225689999999999999885 55887776567777
Q ss_pred HHHHHhcc------------------------------------------------------------------------
Q 015939 225 ALFDYLKL------------------------------------------------------------------------ 232 (398)
Q Consensus 225 ~Lv~lL~~------------------------------------------------------------------------ 232 (398)
.|+.+|++
T Consensus 239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~ 318 (584)
T 3l6x_A 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318 (584)
T ss_dssp HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence 77777653
Q ss_pred -ccCHHHHHHHHHHHHHhcCCc-----chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939 233 -AEDQALNDAILSILITLSVYR-----SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA 306 (398)
Q Consensus 233 -~~~~~~~~~a~~aL~~Ls~~~-----~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~ 306 (398)
..++.++++|+++|.||+.+. .++..+.+.|+++.|+++|. +++..+++.|+++|+||+.++.++..|. .
T Consensus 319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~~I~--~ 394 (584)
T 3l6x_A 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAVDARNKELIG--K 394 (584)
T ss_dssp HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCSCHHHHH--H
T ss_pred cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhCChhHHHHHH--h
Confidence 113455667777788886543 22333346899999999995 4788999999999999999888887774 4
Q ss_pred CcHHHHHHHHhcc--------ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHH
Q 015939 307 SCAGRVVERVMKV--------GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVK 377 (398)
Q Consensus 307 g~v~~Lv~~l~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~ 377 (398)
|+++.||.+|..+ +..+...|+++|.||+.. +++.+..+++.|+++.|+.+++++ .++.+++.|+.+|.
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~ 472 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ 472 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 8999999999875 457788999999999864 478999999999999999999874 47899999999999
Q ss_pred HHhcCC----CCCCCCCCcccccc
Q 015939 378 VLGKAS----GLGNYQTKTAHIMP 397 (398)
Q Consensus 378 ~l~~~~----~~~~~~~~~~~~~~ 397 (398)
.|..+. -.....+++.||++
T Consensus 473 nl~~~~elr~~~kk~G~~~~~f~~ 496 (584)
T 3l6x_A 473 TIWGYKELRKPLEKEGWKKSDFQV 496 (584)
T ss_dssp HHHTSHHHHHHHHTTTCCGGGGCC
T ss_pred HHHcCHHHHHHHHHcCCCHHHhcc
Confidence 998752 24446667777653
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=6.1e-27 Score=235.07 Aligned_cols=281 Identities=12% Similarity=0.120 Sum_probs=237.4
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
.++.+++.+.|.+.+ .+..|+..++++.+. .....+.+++. |+||.|+.+|++ .+ +..++..|+++|.|++.++
T Consensus 58 ~i~~~v~~l~s~d~~--~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~-~~-~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 58 SVEDIVKGINSNNLE--SQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGK-TD-CSPIQFESAWALTNIASGT 132 (510)
T ss_dssp CHHHHHHHHTSSCHH--HHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTC-TT-CHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCC-CC-CHHHHHHHHHHHHHHhcCC
Confidence 478899999998865 899999999986643 33346788899 999999999986 32 3457799999999999866
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhcccc----CHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAE----DQALN 239 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~ 239 (398)
++ +++. +++.|++|.|+.+|++++.++++.|+++|.+|+.+ ++.+..+.. .|++++|+.+|.... ....+
T Consensus 133 ~e---~~~~-vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 133 SE---QTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp HH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred HH---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHH
Confidence 65 3455 78999999999999999999999999999999987 677888887 899999999998651 23568
Q ss_pred HHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc
Q 015939 240 DAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK 318 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~ 318 (398)
+.++++|.+++.+......+. ..|+++.|+.+|. +.+++++..|+++|.+|+..+..+..++...|+++.|+.++..
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 899999999998776544443 5789999999995 4789999999999999998666555444468999999999999
Q ss_pred cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+..++..|+++|++++..+ +..+..+++.|+++.|+.+|++. ++.+|+.|+++|.++..
T Consensus 286 ~~~~v~~~al~aL~nl~~~~--~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 345 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred CChhhhhHHHHHHHHhhcCC--HHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 99999999999999999753 67888999999999999999876 78999999999999976
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=9.2e-27 Score=240.87 Aligned_cols=287 Identities=13% Similarity=0.070 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.|+..+++++.+ .+.+|++.|.+++.+ +.+|..+++. |++++|+.+|.+ .+ ...++.|+++|.+++.+.
T Consensus 495 GaVp~LV~LL~s~s~~--vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gaip~Lv~LL~s-~~--~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 495 GITTALCALAKTESHN--SQELIARVLNAVCGL-KELRGKVVQE-GGVKALLRMALE-GT--EKGKRHATQALARIGITI 567 (810)
T ss_dssp THHHHHHHHHTCCCHH--HHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHS-SC--HHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHcCCCHH--HHHHHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHcc-CC--HHHHHHHHHHHHHHhcCC
Confidence 3577888888887754 899999999999964 6799999999 999999999988 43 356799999999999764
Q ss_pred chHHHhhHhhhc---cCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939 165 GVKEKLNRLILN---TYNCLPLFLEILREG-NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALN 239 (398)
Q Consensus 165 ~~~~~~~~~il~---~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 239 (398)
+.. .. +. ..|++|.|+++|+++ +...+..|+++|.+|+.. ++++..+.+ .|+++.|+.+|.+. ++.++
T Consensus 568 ~p~----~~-~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~-~~~Vq 640 (810)
T 3now_A 568 NPE----VS-FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED-HLYLT 640 (810)
T ss_dssp CHH----HH-TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC-CTTHH
T ss_pred Chh----hh-hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHH
Confidence 431 11 11 136999999999876 445567899999999988 678888888 89999999999998 88899
Q ss_pred HHHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh
Q 015939 240 DAILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM 317 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~ 317 (398)
++|+++|.||+.+++.+..+++ .|+++.|+.++. +.+..+++.|+++|.+|+. ++...+.+..++|+++.|+.++.
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE--DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence 9999999999999999888885 799999999995 4788999999999999998 78888999854799999999999
Q ss_pred ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc--CcHHHHHHHHHHHHHHhcCCCCCCCC
Q 015939 318 KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE--NEGIVRKMCGDLVKVLGKASGLGNYQ 389 (398)
Q Consensus 318 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~--~~~~~k~~A~~lL~~l~~~~~~~~~~ 389 (398)
.++.++++.|+.+|.|++..+ .+....+++.|+++.|..+++.. .+.++.+.|...|+.+-+|+-+...+
T Consensus 719 s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~ 790 (810)
T 3now_A 719 NPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSD 790 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCC
Confidence 999999999999999999853 67899999999999999999654 47899999999999999976665555
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=7.4e-27 Score=222.52 Aligned_cols=246 Identities=15% Similarity=0.105 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHcC---------CCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHH
Q 015939 85 QEVRVWIEKIKSE---------NESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR 155 (398)
Q Consensus 85 ~~i~~l~~~l~~~---------~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~ 155 (398)
+.++.|+..|.+. ..+.+.+..|++.|.+++.+++.+|..+...+|+||.|+.+|++ .+ ..+++.|++
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~--~~v~~~A~~ 149 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ES--EDLQQVIAS 149 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SC--HHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CC--HHHHHHHHH
Confidence 4567777777532 11124678999999999988888898886553779999999997 44 457799999
Q ss_pred HHHhhhcccchHHHhhHhhhccCCChHHHHHHH-hcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccc
Q 015939 156 VLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL-REGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLA 233 (398)
Q Consensus 156 ~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~ 233 (398)
+|.+|+..+++ .+|.. +.+.|+|+.|+++| ++++.++++.|+.+|++|+. .++++..++...|+++.|+++|+++
T Consensus 150 aL~nLs~~~~~--~~k~~-i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 150 VLRNLSWRADV--NSKKT-LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHTTCCH--HHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHhccCCH--HHHHH-HHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 99999975322 25666 67899999999975 56789999999999999999 5788888884489999999999977
Q ss_pred cCH---HHHHHHHHHHHHhcC----CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhc
Q 015939 234 EDQ---ALNDAILSILITLSV----YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEE 305 (398)
Q Consensus 234 ~~~---~~~~~a~~aL~~Ls~----~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~ 305 (398)
.+. ++++.|+++|+||+. +++++..+++.|+++.|+++|+ +.+..+++.|+++|.||+. ++++++.+. +
T Consensus 227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~ 303 (354)
T 3nmw_A 227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALW-D 303 (354)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHH-H
T ss_pred CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHHHHHHHHHHHHHhCCCHHHHHHHH-H
Confidence 332 589999999999985 7789999999999999999995 4788999999999999994 789999998 5
Q ss_pred cCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939 306 ASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 306 ~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~ 339 (398)
.|+|+.|++++.++++.+++.|+.+|.+|+.+.+
T Consensus 304 ~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 304 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 7999999999999999999999999999998754
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=1.2e-26 Score=229.82 Aligned_cols=281 Identities=11% Similarity=0.114 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.|++.|++++.+ .+..|+++|++++.+++.+|..+++. |++|.|+.+|..+. +.++++.|+++|.+|+.++
T Consensus 44 g~i~~Lv~lL~s~~~~--~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~ 118 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQN--VQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp THHHHHHHHTTSSCHH--HHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCH
Confidence 4688999999977654 88999999999999889999999999 99999999998413 4567799999999999874
Q ss_pred chHHHhhHhhhccCCChHHHHHHHh--------cC--------ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILR--------EG--------NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD 228 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~ 228 (398)
+ +|.. +.+ |++|.|+++|. ++ +.+++..|+++|++|+.+++++..+.+..|++++|+.
T Consensus 119 ~----~~~~-i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~ 192 (457)
T 1xm9_A 119 E----LKEE-LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA 192 (457)
T ss_dssp S----THHH-HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHH
T ss_pred H----hHHH-HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHH
Confidence 4 3676 456 99999999993 22 3455669999999999998899998872399999998
Q ss_pred Hhccc---------------------------------------------------------------------------
Q 015939 229 YLKLA--------------------------------------------------------------------------- 233 (398)
Q Consensus 229 lL~~~--------------------------------------------------------------------------- 233 (398)
+|+++
T Consensus 193 lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (457)
T 1xm9_A 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272 (457)
T ss_dssp HHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS
T ss_pred HHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC
Confidence 88641
Q ss_pred -----------------------cCHHHHHHHHHHHHHhcCCcch-----HHHHH-HcCChHHHHHHhcccCcchhhHHH
Q 015939 234 -----------------------EDQALNDAILSILITLSVYRSV-----KAQLV-ELGMVQILTRILSDSRTQILTVEK 284 (398)
Q Consensus 234 -----------------------~~~~~~~~a~~aL~~Ls~~~~~-----~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~ 284 (398)
.++..+++|+++|+||+.+... .+.++ ++|++|.|+++|. +++.+++..
T Consensus 273 ~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~ 350 (457)
T 1xm9_A 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRS 350 (457)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHH
T ss_pred chHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHH
Confidence 1245667789999999875432 13344 6999999999995 478999999
Q ss_pred HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccCh------hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHH
Q 015939 285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGK------TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLL 358 (398)
Q Consensus 285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~ 358 (398)
|+++|.+|+.+++++..+. .|+++.|+.+|..+++ ++...++.+|.++...+ ++....+.+.|++++|+.
T Consensus 351 A~~aL~nls~~~~~~~~i~--~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 351 GASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHH--HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHH
Confidence 9999999999988887776 3799999999987543 57779999999998743 678888999999999999
Q ss_pred HHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 359 VMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 359 ~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
++.++-+++++++|..+|..+..+
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcc
Confidence 998664789999999999988763
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=4.7e-26 Score=229.67 Aligned_cols=282 Identities=13% Similarity=0.126 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++.|++.|..++. .+.+..|+++|.+++.+++.++..+++. |++|.|+.+|.+ .+ ..+++.|+++|.+++.+
T Consensus 118 ~G~ip~Lv~lL~~~~~-~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s-~~--~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS-PH--AHISEQAVWALGNIAGA 192 (529)
T ss_dssp TTHHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcc
Confidence 3567889999976553 3478899999999999989999999999 999999999998 44 56779999999999987
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCC-----hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGN-----LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 238 (398)
++. +|.. +.+.|+++.|+.+|...+ ...+..++++|.+++.+......+....|+++.|+++|.++ ++++
T Consensus 193 ~~~---~r~~-i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v 267 (529)
T 3tpo_A 193 GSA---FRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEV 267 (529)
T ss_dssp CHH---HHHH-HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHH
T ss_pred CHH---HHHH-HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHH
Confidence 655 4565 778999999999998654 34577899999999998655444444478999999999998 8999
Q ss_pred HHHHHHHHHHhcCCcchHH-HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHH
Q 015939 239 NDAILSILITLSVYRSVKA-QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~~-~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
+..++++|.+|+.+.+++. .+++.|+++.|+++|. +++..++..++.+|.+|+. +++.+..+. +.|+++.|+.++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL 344 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHT
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHH
Confidence 9999999999998776554 4569999999999995 4789999999999999987 566677777 579999999999
Q ss_pred hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..+++.+++.|+++|.+|+.++ +..+..+++.|+++.|+.+|+++ +..+|+.|+++|.++..
T Consensus 345 ~~~~~~i~~~a~~aL~nl~~~~--~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 345 TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp TCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccc--HHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 9999999999999999999854 67888999999999999999877 78999999999998865
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=6.2e-26 Score=228.78 Aligned_cols=282 Identities=10% Similarity=0.112 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccC---CcHHHHHHHHHHHHhhh
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR---SEIAVLESAVRVLNLIV 161 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~---~~~~~~~~al~~L~~l~ 161 (398)
+.++.|+..|.+++.+ .+..|+++|.+++.+++.+|..+.+. |+++.|+.+|.. .+ .....+..++++|.+++
T Consensus 162 Gaip~Lv~LL~s~~~~--v~e~A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~-~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 162 GAIPAFISLLASPHAH--ISEQAVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAV-PDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp THHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCS-SCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhc-cchhHhHHHHHHHHHHHHHHHH
Confidence 4578889888887765 88999999999999999999999999 999999999976 22 12456788999999999
Q ss_pred cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh-HHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939 162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES-KRRVLETENLLSALFDYLKLAEDQALND 240 (398)
Q Consensus 162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 240 (398)
.+.... ..+....+++|.|+.+|++++.+++..|+++|.+|+.+++. ...+.. .|+++.|+.+|.+. ++.++.
T Consensus 238 ~~~~~~----~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~v~~ 311 (529)
T 3tpo_A 238 RNKNPA----PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGAT-ELPIVT 311 (529)
T ss_dssp CCCTTC----CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCS-CHHHHH
T ss_pred hcccch----hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCC-ChhHHH
Confidence 876542 22233468899999999999999999999999999998554 444555 89999999999998 899999
Q ss_pred HHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc
Q 015939 241 AILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK 318 (398)
Q Consensus 241 ~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~ 318 (398)
.++++|.+++... ..+..+++.|+++.|+.+|. ++++.+++.|+++|.||+. ++..+..+. +.|+++.|+.++.+
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~~~~~v~-~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHHHHHHHH-hcCcHHHHHHHhcC
Confidence 9999999998755 56777889999999999995 4788999999999999988 555666666 67999999999999
Q ss_pred cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..+++.|+.+|.+++... +.+....+++.|+++.|+.+|.+. +++++..+...|..+-.
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ 449 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999763 467888899999999999999877 78899999888877654
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.3e-25 Score=200.06 Aligned_cols=237 Identities=15% Similarity=0.209 Sum_probs=212.9
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
|.++.|+.+|.+ .+ ..++..|+.+|.+++...+. ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+
T Consensus 2 ~~i~~L~~~L~~-~~--~~~~~~a~~~L~~l~~~~~~---~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTS-TD--SETQKEAARDLAEIASGPAS---AIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTSCHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCCcH---HHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 789999999998 44 56779999999999987653 3555 77899999999999999999999999999999998
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIK 287 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~ 287 (398)
++++..+.. .|+++.|+.+|+++ +++++..|+++|.+|+ .+++++..+++.|+++.|+++|. ++++.++..+++
T Consensus 75 ~~~~~~~~~~-~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~ 150 (252)
T 4hxt_A 75 PDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAAR 150 (252)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHH
T ss_pred ChHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHH
Confidence 888888887 89999999999988 8999999999999999 56678888999999999999995 478999999999
Q ss_pred HHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH
Q 015939 288 MLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG 366 (398)
Q Consensus 288 ~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~ 366 (398)
+|.+|+. .+..+..+. +.|+++.|+.++.++++.++..|+.+|.+++.. ++..+..+.+.|+++.|+.+++.+ ++
T Consensus 151 ~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~-~~ 226 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTST-DS 226 (252)
T ss_dssp HHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGCS-CH
T ss_pred HHHHHHcCCHHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCCC-cH
Confidence 9999998 555667777 579999999999999999999999999999974 367888999999999999999876 78
Q ss_pred HHHHHHHHHHHHHhc
Q 015939 367 IVRKMCGDLVKVLGK 381 (398)
Q Consensus 367 ~~k~~A~~lL~~l~~ 381 (398)
.+|+.|..+|..+..
T Consensus 227 ~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 227 EVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999998
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=3.3e-25 Score=201.50 Aligned_cols=237 Identities=15% Similarity=0.195 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
...+.+++.|++++.+ .+..|++.|+++...++.++..+.+. |+++.|+.+|++ .+ ..++..|+++|.+++.++
T Consensus 12 ~~~~~~~~~L~s~~~~--~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~-~~--~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ--EQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSS-PN--EQILQEALWALSNIASGG 85 (252)
T ss_dssp CSHHHHHHHHHSSCSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGC-SC--HHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCC
Confidence 3477889999998876 99999999988776678889999999 999999999998 44 567799999999999865
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH-HHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK-RRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+. ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+++.+ ..+.. .|+++.|+++|+++ ++.++..|+
T Consensus 86 ~~---~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~-~~~v~~~a~ 159 (252)
T 4db8_A 86 NE---QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEAL 159 (252)
T ss_dssp HH---HHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred HH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCC-CHHHHHHHH
Confidence 54 3555 778899999999999999999999999999999998888 77776 89999999999998 899999999
Q ss_pred HHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939 244 SILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK 321 (398)
Q Consensus 244 ~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~ 321 (398)
++|.+|+... +++..+++.|+++.|+++|.+ +++.+++.|+++|.+|+. +++.+..+. +.|+++.|+.++.++++
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSS
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCH
Confidence 9999999755 567777899999999999954 689999999999999995 677777887 57999999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 015939 322 TAREDAVVVIWSMCC 336 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~ 336 (398)
.+++.|+.+|.+|+.
T Consensus 237 ~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 237 KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999885
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=2.8e-24 Score=216.54 Aligned_cols=280 Identities=15% Similarity=0.122 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.|++.|.+++. .+.+..|++.|.+++.+++.++..+.+. |+++.|+.+|.+ . +..+++.|+++|.+++.+.
T Consensus 117 g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~--~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 117 GVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGS-S--SDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp TCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-S--CHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcC-C--CHHHHHHHHHHHHHHhCCC
Confidence 347788888887652 3478899999999999889999999999 999999999998 4 4567799999999999765
Q ss_pred chHHHhhHhhhccCCChHHHHHHH-hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEIL-REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+. ++.. +...|+++.|+.+| ++.+..++..++++|.+|+........... .|+++.|+.+|.+. +++++..++
T Consensus 192 ~~---~~~~-i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~v~~~a~ 265 (528)
T 4b8j_A 192 PK---CRDL-VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN-DEEVLTDAC 265 (528)
T ss_dssp HH---HHHH-HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC-CHHHHHHHH
T ss_pred hh---hHHH-HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC-CHHHHHHHH
Confidence 54 3555 66889999999999 566899999999999999988433333334 79999999999988 899999999
Q ss_pred HHHHHhcCCcchH-HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc-C
Q 015939 244 SILITLSVYRSVK-AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV-G 320 (398)
Q Consensus 244 ~aL~~Ls~~~~~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~-~ 320 (398)
++|.+|+...+.+ ..+++.|+++.|+.+|. ++++.++..|+.+|.+|+. .+..++.+. +.|+++.|+.+|..+ +
T Consensus 266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~ 342 (528)
T 4b8j_A 266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLK 342 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCc
Confidence 9999999877655 56679999999999995 4678999999999999998 566777777 579999999999988 9
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.+++.|+.+|.+|+.. ++.....++..|+++.|+.+|+.+ ++.+|+.|..+|..+..
T Consensus 343 ~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 343 KSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 99999999999999974 367788889999999999999887 89999999999999887
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=9e-25 Score=220.10 Aligned_cols=282 Identities=13% Similarity=0.130 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
..++.+++.|.+++. +.+..|+..|+.++.... .++..+.+. |+++.|+.+|.+ .+ +..++..|+++|.+++.+
T Consensus 74 ~~l~~lv~~L~s~~~--~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~-~~-~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDN--NLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTR-ED-FPQLQFEAAWALTNIASG 148 (528)
T ss_dssp -CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTC-TT-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCC-CC-CHHHHHHHHHHHHHHhCC
Confidence 347889999987764 488999999999876544 667788888 999999999987 33 246779999999999986
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
.+. ++.. +...|+++.|+.+|.+++.+++..|+++|.+|+.+ +.++..+.. .|++++|+.+|....++.++..+
T Consensus 149 ~~~---~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 149 TSE---NTKV-VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp CHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHH
T ss_pred CHH---HHHH-HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHH
Confidence 554 3555 67889999999999999999999999999999977 567888877 79999999999544489999999
Q ss_pred HHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhccCcHHHHHHHHhccCh
Q 015939 243 LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEASCAGRVVERVMKVGK 321 (398)
Q Consensus 243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~g~v~~Lv~~l~~~~~ 321 (398)
+++|.+|+.........+..|+++.|+.+|. +.++.++..++++|.+|+..+..+ +.+. ..|+++.|+.+|...++
T Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPSFEQTRPALPALARLIH--SNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSP 300 (528)
T ss_dssp HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTCHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCHHHHHHHHHcCCCh
Confidence 9999999987655555567899999999995 478999999999999999866555 4555 67999999999999999
Q ss_pred hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.++..|+.+|.+|+... +.....+++.|+++.|+.+|+.+.++.+++.|+++|..+..
T Consensus 301 ~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999999999999853 67888899999999999999866578999999999999986
No 19
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=199.98 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=173.6
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
-.+|.|+.+|.+ .+.+.+++..|++.|.+++..++. +|.. +.+.|+||.|+++|++++.++++.|+++|++|+.+
T Consensus 8 ~~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~---~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSE---ARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHH---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 358999999998 665446678899999999976554 4666 77889999999999999999999999999999985
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc---c----------
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD---S---------- 275 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~---~---------- 275 (398)
+++|..|.+ .|+|++|+++|++..+.++++.|+.+||+|+..+++|..+++. ++++|++++.. .
T Consensus 83 ~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 83 DNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 889999998 8999999999985338899999999999999999999999875 79999987631 0
Q ss_pred -CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc------ChhHHHHHHHHHHHhhcc
Q 015939 276 -RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV------GKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 276 -~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~------~~~~~~~a~~~L~~l~~~ 337 (398)
..++.++++|.++|+||+. ++++|+.|.+..|+|+.||.+++.+ +++.+|+|+.+|+||+..
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 1366899999999999987 6799999997778999999999862 678999999999999974
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.5e-24 Score=196.53 Aligned_cols=238 Identities=14% Similarity=0.188 Sum_probs=211.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.+++.|.+++. +.+..|++.|.+++..++.++..+.+. |+++.|+.+|++ .+ ..++..|+++|.+++.+++
T Consensus 3 ~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~--~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 3 DVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS-TD--SEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHTTSCH
T ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC-CC--HHHHHHHHHHHHHHHcCCh
Confidence 47788999988774 488999999999999888899999999 999999999998 44 5677999999999998754
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
. ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+. +++++..+.. .|+++.|+++|++. +++++..+++
T Consensus 77 ~---~~~~-~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~~a~~ 150 (252)
T 4hxt_A 77 E---AIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAAR 150 (252)
T ss_dssp H---HHHH-HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred H---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 4 3555 6789999999999999999999999999999994 5788888887 89999999999998 8999999999
Q ss_pred HHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939 245 ILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKT 322 (398)
Q Consensus 245 aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~ 322 (398)
+|.+|+...+ ++..+++.|+++.|+.+|. ++++.++..|+++|.+|+. +++.++.+. +.|+++.|++++.++++.
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHH
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHH
Confidence 9999998554 5677889999999999995 4788999999999999998 667777777 579999999999999999
Q ss_pred HHHHHHHHHHHhhccC
Q 015939 323 AREDAVVVIWSMCCVY 338 (398)
Q Consensus 323 ~~~~a~~~L~~l~~~~ 338 (398)
+++.|+.+|.+|+...
T Consensus 228 v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 228 VQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999764
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=7.7e-25 Score=199.05 Aligned_cols=237 Identities=18% Similarity=0.202 Sum_probs=207.5
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
...+.++..|.+ .+.. ++..|+.+|.++...++ .++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+
T Consensus 12 ~~~~~~~~~L~s-~~~~--~~~~a~~~L~~~l~~~~---~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 12 SELPQMTQQLNS-DDMQ--EQLSATRKFSQILSDGN---EQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CSHHHHHHHHHS-SCSS--HHHHHHHHHHHHHHHHH---HHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHcC-CCHH--HHHHHHHHHHHHHcCCC---chHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 568889999998 5554 45999999977665422 23555 67889999999999999999999999999999984
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH-HHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK-AQLVELGMVQILTRILSDSRTQILTVEKSIK 287 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~ 287 (398)
++++..+.. .|+++.|+.+|+++ ++.++..|+++|.+|+.+.+++ ..+++.|+++.|+++|. ++++.++..|++
T Consensus 85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~ 160 (252)
T 4db8_A 85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALW 160 (252)
T ss_dssp CHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHH
T ss_pred CHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHH
Confidence 788888887 89999999999998 8999999999999999999888 77889999999999995 468899999999
Q ss_pred HHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH
Q 015939 288 MLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG 366 (398)
Q Consensus 288 ~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~ 366 (398)
+|.+|+. .++.+..+. +.|+++.|+.++..+++.+++.|+.+|.+++..+ +..+..+.+.|+++.|+.+++.+ ++
T Consensus 161 ~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~-~~ 236 (252)
T 4db8_A 161 ALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSHE-NE 236 (252)
T ss_dssp HHHHHTTSCHHHHHHHH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTCS-SS
T ss_pred HHHHHHcCChHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCCC-CH
Confidence 9999998 556666666 5799999999999999999999999999999743 67888899999999999999876 88
Q ss_pred HHHHHHHHHHHHHhc
Q 015939 367 IVRKMCGDLVKVLGK 381 (398)
Q Consensus 367 ~~k~~A~~lL~~l~~ 381 (398)
.+|+.|..+|..+..
T Consensus 237 ~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 237 KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.4e-23 Score=209.91 Aligned_cols=279 Identities=12% Similarity=0.098 Sum_probs=238.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.+++.|.+++. .+.+..|++.|.+++..++.++..+.+. |+++.|+.+|.+ . +..+++.|+++|.+++.+.+
T Consensus 131 ~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~-~--~~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 131 VVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYT-G--SVEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp CHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHH-C--CHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcC-C--CHHHHHHHHHHHHHHhCCCc
Confidence 46778888876522 3478899999999999888888889888 999999999998 4 45677999999999998654
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
. ++.. +...|+++.|+.+|.+.+.+++..|+++|.+|+.+. ........ .|+++.|+.+|.+. ++.++..+++
T Consensus 206 ~---~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~ 279 (530)
T 1wa5_B 206 D---YRDY-VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACW 279 (530)
T ss_dssp H---HHHH-HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHH
T ss_pred c---chHH-HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4 3555 667899999999999999999999999999999874 44444444 79999999999988 8999999999
Q ss_pred HHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939 245 ILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKT 322 (398)
Q Consensus 245 aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~ 322 (398)
+|.+|+... +....+++.|+++.|+.+|. +.++.++..|+.+|.+|+. .+...+.+. +.|+++.|+.+|..++..
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~ 356 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKEN 356 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHH
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHH
Confidence 999999765 46777789999999999995 4688999999999999997 456666666 569999999999999999
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+++.|+.+|.+++..+ ++....+++.|+++.|+.+|+.+ ++.+|..|.++|..+..
T Consensus 357 vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 357 IKKEACWTISNITAGN--TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999753 56777788999999999999876 89999999999999976
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.8e-23 Score=210.86 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
..++.+++.|.+++. +.+..|+..|+.+... +..++..+.+. |+++.|+.+|.+ .+ +..++..|+++|.+++..
T Consensus 87 ~~i~~lv~~L~s~~~--~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~-~~-~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 87 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRE-NQ-PEMLQLEAAWALTNIASG 161 (530)
T ss_dssp CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTST-TS-CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCC-CC-CHHHHHHHHHHHHHHhCC
Confidence 347889999987764 4889999999998754 34556777888 999999999987 31 456779999999999986
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
.+. .+.. +...|+++.|+.+|.+++.+++..|+++|.+|+.+ ++++..+.. .|+++.|+.+|.+. ++.++..+
T Consensus 162 ~~~---~~~~-~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a 235 (530)
T 1wa5_B 162 TSA---QTKV-VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN-KPSLIRTA 235 (530)
T ss_dssp CHH---HHHH-HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC-CHHHHHHH
T ss_pred CHH---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC-CHHHHHHH
Confidence 554 2444 66889999999999999999999999999999987 678888777 79999999999986 89999999
Q ss_pred HHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhccC
Q 015939 243 LSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMKVG 320 (398)
Q Consensus 243 ~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~~ 320 (398)
+++|.+|+.+. .........|+++.|+.+|. +.++.++..++++|.+|+.. ++.+..+. ..|+++.|+.++...+
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSC
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCC
Confidence 99999999765 55555667899999999995 46889999999999999974 56677777 5699999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.++..|+.+|.+++... +.....+++.|+++.|+.+|+.+ +..+|+.|.++|..++.
T Consensus 313 ~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 999999999999999753 56778888999999999999877 79999999999999986
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=9.9e-23 Score=200.37 Aligned_cols=279 Identities=15% Similarity=0.151 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.|.+++. .+.+..|++.|.+++..++.++..+.+. |+++.|+.+|++ . +..+++.|+++|.+++.+.
T Consensus 64 ~~i~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~-~--~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSS-E--FEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTC-HHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTC-S--CHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcC-C--CHHHHHHHHHHHHHHccCC
Confidence 467888888887732 3488899999999998777777778888 999999999998 4 4567799999999999866
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDA 241 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 241 (398)
+. ++.. +...|+++.|+.+|++ .+.+++..|+++|.+|+.+. ..+..+. .++++.|+.+|++. ++.++..
T Consensus 139 ~~---~~~~-~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~-~~~v~~~ 211 (450)
T 2jdq_A 139 TM---CRDY-VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVS-DTDVLAD 211 (450)
T ss_dssp HH---HHHH-HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCC-CHHHHHH
T ss_pred HH---HHHH-HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccC-CHHHHHH
Confidence 54 3555 6678999999999996 58999999999999999763 3333332 68999999999988 8899999
Q ss_pred HHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhcc
Q 015939 242 ILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMKV 319 (398)
Q Consensus 242 a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~~ 319 (398)
++++|.+|+... +++..+++.|+++.|+.+|. +.++.++..|+.+|.+|+... ..++.+. +.|+++.|+.++.+.
T Consensus 212 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~ 288 (450)
T 2jdq_A 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSP 288 (450)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCC
Confidence 999999999865 56777789999999999995 478899999999999999854 4555566 569999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++.+++.|+.+|.+++..+ ++....+++.|+++.|+.+|+.+ ++.+|+.|..+|..+..
T Consensus 289 ~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGN--RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 9999999999999999743 67777888899999999999876 79999999999999875
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.7e-23 Score=210.25 Aligned_cols=279 Identities=16% Similarity=0.121 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.|.++.. ++.+..|+..|.+++.. +.++..+.+. |+++.|+.+|++ .+ ..++..|+++|.+++.++
T Consensus 59 ~~i~~Lv~~L~~~~~-~~~~~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~L~~lL~~-~~--~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 59 QMVSAIVRTMQNTND-VETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGS-PV--DSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcC-chhHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCC
Confidence 467888888876532 34788999999999876 5599999999 999999999988 44 567799999999999875
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+. .+.. +.+.|+++.|+++|++++.+++..++.+|.+++.. ++++..+.. .|+++.|+++|+++.+...+..++
T Consensus 133 ~~---~~~~-i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 133 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp TT---HHHH-HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cc---hHHH-HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHH
Confidence 54 2444 66889999999999999999999999999999986 788888887 799999999999886677888999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
.+|++|+.+++++..+++.|+++.|++++.+ .++.+++.++++|.+|+....... . ..|+++.|++++.+.++.+
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v 282 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINV 282 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999954 688999999999999998543221 2 2488999999999999999
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhc
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~ 381 (398)
++.|+.+|.+|+..+ ++.+..+.+.|+++.|+.+|... .++.+++.|..+|..+..
T Consensus 283 ~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 283 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 999999999999853 67889999999999999999764 247999999999999875
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=1e-22 Score=200.32 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.+++++. +.+..|++.|.+++..++.++..+.+. |+++.|+.+|.+ +.+..++..|+++|.+++.+.
T Consensus 107 ~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 107 GAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp THHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCC
Confidence 357778888887654 388899999999999888899999988 999999999985 234567899999999999765
Q ss_pred -chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939 165 -GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI 242 (398)
Q Consensus 165 -~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a 242 (398)
+. .+.. + ..++++.|+.+|++++.+++..++++|.+|+.. ++....+.. .|+++.|+.+|.+. +++++..+
T Consensus 182 ~~~---~~~~-~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a 254 (450)
T 2jdq_A 182 SPP---PEFA-K-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHN-DYKVVSPA 254 (450)
T ss_dssp SSC---CCGG-G-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCS-CHHHHHHH
T ss_pred CCC---CCHH-H-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCC-chhHHHHH
Confidence 22 1222 2 378999999999999999999999999999987 456666666 79999999999987 89999999
Q ss_pred HHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccC
Q 015939 243 LSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVG 320 (398)
Q Consensus 243 ~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~ 320 (398)
+++|.+++...+ .+..+++.|+++.|+.+|.+ +++.++..|+++|.+|+. +++..+.+. +.|+++.|+.++.+++
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVI-DANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCC
Confidence 999999998765 45556789999999999954 688999999999999996 677777777 4699999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.++..|+.+|.+++... +++....+++.|+++.|+.+++.+ ++.+++.|..+|..+..
T Consensus 332 ~~v~~~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999752 356777788999999999999876 78999999999988876
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.9e-23 Score=213.22 Aligned_cols=279 Identities=16% Similarity=0.124 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.|.++.. .+.+..|+..|..++.. +.++..+.+. |+++.|+.+|++ .+ ..++..|+.+|.+++...
T Consensus 56 ~~i~~Lv~~L~~~~~-~~~~~~A~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~-~~--~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 56 QMVSAIVRTMQNTND-VETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGS-PV--DSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTS-HHHHHHHHTT-THHHHHHHHTTC-SS--HHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcC-hhhHHHHHHc-CCHHHHHHHHhC-CC--HHHHHHHHHHHHHHHhCc
Confidence 557888999986532 34788999999999877 4599999999 999999999988 43 567799999999999875
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+. .+.. +.+.|+++.|+++|++++...+..++.+|.+|+. +++++..+.. .|+++.|+++|++......+..++
T Consensus 130 ~~---~~~~-v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~ 204 (644)
T 2z6h_A 130 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 204 (644)
T ss_dssp TT---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ch---hHHH-HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHH
Confidence 44 2444 6688999999999999998888888999999997 5789999888 799999999999886677889999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
.+|++|+.+.+++..+++.|+++.|++++.+ .+..+++.++++|.+|+...... .. ..|+++.|+.++...++.+
T Consensus 205 ~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~v 279 (644)
T 2z6h_A 205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINV 279 (644)
T ss_dssp HHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTTC--CS-CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchhh--hh-hhhHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999954 68899999999999999743221 12 2478999999999999999
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK 381 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~ 381 (398)
++.|+.+|.+|+..+ ++.+..+.+.|+++.|+.+|....+ +.+++.|..+|..+..
T Consensus 280 ~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 280 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 999999999999853 6788899999999999999987533 7999999999999965
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.7e-22 Score=178.36 Aligned_cols=197 Identities=18% Similarity=0.215 Sum_probs=176.3
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS 254 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~ 254 (398)
..+..+.|+.+|++++.+++..|+++|.+|+.. ++.+..+.+ .|+++.|+.+|+++ +++++..|+++|.+|+. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 468899999999999999999999999999955 778888887 89999999999998 89999999999999995 557
Q ss_pred hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
++..+++.|+++.|+.+|+ ++++.+++.|+++|.+|+. .++.+..+. +.|+++.|+.++.++++.+++.|+.+|.+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8888999999999999995 4689999999999999996 566667777 57999999999999999999999999999
Q ss_pred hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..+ ++.+..+.+.|+++.|+.+++++ ++.+|+.|..+|..|++
T Consensus 165 l~~~~--~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGG--NEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSC--HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHcCC--cHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 99853 67888999999999999999866 89999999999999875
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3e-22 Score=201.17 Aligned_cols=280 Identities=15% Similarity=0.155 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.|++++.+ .+..|++.|.+++..++.++..+.+. |+++.|+.+|++ . +.++...++.+|.+++..+
T Consensus 101 g~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-~--~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDS--VLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNK-T--NVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp THHHHHHHHTTCSCHH--HHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGC-C--CHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHhc-C--CHHHHHHHHHHHHHHHhCC
Confidence 3577888888877644 88899999999998878889999888 999999999987 3 3566788889999998754
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCC-hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGN-LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
++ ++.. +.+.|+++.|+.+|++++ ...+..++.+|.+|+.+++++..+.. .|+++.|+.+++++ ++++++.++
T Consensus 175 ~~---~~~~-i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~~a~ 248 (529)
T 1jdh_A 175 QE---SKLI-ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDP-SQRLVQNCL 248 (529)
T ss_dssp HH---HHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSS-CHHHHHHHH
T ss_pred HH---HHHH-HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCC-ChHHHHHHH
Confidence 44 4565 667899999999999874 45667789999999999999999988 89999999999998 899999999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhcc--C
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMKV--G 320 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~--~ 320 (398)
++|.+|+....... ...|+++.|+++|. +.++.+++.|+++|.+|+.. ++++..+. +.|+++.|+.++... +
T Consensus 249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 249 WTLRNLSDAATKQE--GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHTTCTTCS--CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCChhhH--HHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCH
Confidence 99999987653321 23478999999994 47899999999999999885 67888888 579999999999863 3
Q ss_pred hhHHHHHHHHHHHhhccCCC-hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 321 KTAREDAVVVIWSMCCVYKD-ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 321 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.+++.|+.+|++|+...++ +..+..+.+.|+++.|+.+|+.+.++.+++.|.++|..+..
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 79999999999999976432 23677889999999999999887556899999999999886
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=184.34 Aligned_cols=196 Identities=13% Similarity=0.165 Sum_probs=170.9
Q ss_pred CChHHHHHHHhcCCh--hhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939 179 NCLPLFLEILREGNL--DSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS 254 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~ 254 (398)
-.++.++++|+++++ +++..|++.|.+|+.. ++++..+.. .|+||+||++|+++ ++++++.|+++|.||+. +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999988 8889999999999964 789999988 89999999999998 89999999999999997 578
Q ss_pred hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh---c-------------
Q 015939 255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM---K------------- 318 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~---~------------- 318 (398)
|+..++++|+||.|+++|++ +.+.++++.|.++|.+|+..++++..|.. ++++.|+.++. .
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999999962 35789999999999999999999999984 57999998653 1
Q ss_pred cChhHHHHHHHHHHHhhccCCChhHHHHHHhc-CCHHHHHHHHhhc-----CcHHHHHHHHHHHHHHhc
Q 015939 319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNS-NGLTKLLLVMQSE-----NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-g~~~~Ll~~l~~~-----~~~~~k~~A~~lL~~l~~ 381 (398)
.+..++++|..+|.+|+.. +++.+..+.+. |+|+.|+.+++.. .+.+.+|+|..+|++|+-
T Consensus 163 ~~~~v~~na~~~L~nLss~--~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSA--GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTS--CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1558999999999999974 36889999876 6689999999763 355899999999999873
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.2e-22 Score=207.62 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.|++.|++.+.. .+..|+..|.+++.+. .++..+...+|+++.|+.+|.+ . .+..++..|+.+|.+++.+.
T Consensus 14 g~i~~Lv~lL~~~~~~--vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-~-~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-T-NDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp TTHHHHHHHHTCSCHH--HHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHTTSH
T ss_pred chHHHHHHHHcCCCHH--HHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-C-CCHHHHHHHHHHHHHHhcCh
Confidence 3478888888866544 8899999999999775 4666666544899999999987 3 24567799999999998764
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+ ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+ ++.+..+.. .|+++.|+++|+++ +++.+..++
T Consensus 89 ~----~~~~-i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~~a~ 161 (644)
T 2z6h_A 89 E----GLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITT 161 (644)
T ss_dssp H----HHHH-HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred h----hHHH-HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC-CHHHHHHHH
Confidence 4 3666 66789999999999999999999999999999987 566667766 89999999999998 788899999
Q ss_pred HHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939 244 SILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKT 322 (398)
Q Consensus 244 ~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~ 322 (398)
.+|.+|+. +++++..+++.|+++.|+.+|++ .....+++.++.+|.+|+.+++++..+. ..|+++.|+.++..++..
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSCHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCCHH
Confidence 99999996 67899999999999999999974 3456788999999999999999999999 469999999999999999
Q ss_pred HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+++.++.+|.+++....... ...|+++.|+.+|.++ ++.+++.|+.+|..|+.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~-----~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCC-----SCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcchhhh-----hhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 99999999999997643211 2237899999999866 79999999999998876
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=8.1e-22 Score=207.19 Aligned_cols=279 Identities=16% Similarity=0.122 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
+.++.+++.|.++.. .+.+..|+..|.+++.. +.++..+.+. |+++.|+.+|++ .+ ..++..|+.+|.+++.+.
T Consensus 192 ~~i~~Lv~~L~~~~d-~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~-~~--~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 192 QMVSAIVRTMQNTND-VETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGS-PV--DSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhCCC
Confidence 346677777876532 34888999999998866 5678899998 999999999988 43 567799999999999875
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
+. .+.. +.+.|+++.|+.+|++++..++..++.+|.+|+.. ++++..+.. .|+++.|+.+|++......+..++
T Consensus 266 ~~---~~~~-v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 266 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp TT---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hh---hHHH-HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHH
Confidence 54 2444 66889999999999999999999999999999975 788888888 799999999999885566778899
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
.+|++|+...+++..+++.|+++.|+.++.+ .+..+++.++++|.+|+..... ... ..++++.|+.++...++.+
T Consensus 341 ~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~~~a~~~L~~L~~~~~~--~~~-~~~~i~~Lv~lL~~~d~~v 415 (780)
T 2z6g_A 341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK--QEG-MEGLLGTLVQLLGSDDINV 415 (780)
T ss_dssp HHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC--SCHHHHHHHHHHHHHHHTTCTT--CSC-CHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHhhcChHHHHHHHHhchHHHHHHHHcC--CchHHHHHHHHHHHHHhccchh--hhh-hhhHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999953 6788999999999999975432 112 3478999999999999999
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939 324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK 381 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~ 381 (398)
++.|+.+|.+|+..+ ++.+..+++.|+++.|+.+|....+ +.+++.|..+|..++.
T Consensus 416 r~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 416 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999853 6788899999999999999976433 4899999999999875
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=8.7e-22 Score=173.86 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=172.0
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
|..+.|+.+|.+ .+ ..++..|+++|.+++..++. ++.. +.+.|+++.|+++|++++.+++..|+++|.+|+.+
T Consensus 12 ~~~~~l~~LL~s-~~--~~v~~~a~~~L~~l~~~~~~---~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 12 SELPQMVQQLNS-PD--QQELQSALRKLSQIASGGNE---QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp -CHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTSCHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHhcC-CC--HHHHHHHHHHHHHHHcCCHH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 889999999988 44 56779999999999976554 3455 77889999999999999999999999999999964
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIK 287 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~ 287 (398)
++++..+.+ .|+++.|+.+|+++ ++.++..|+++|.+|+... +.+..+++.|+++.|+++|++ +++.+++.|++
T Consensus 85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~ 160 (210)
T 4db6_A 85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALW 160 (210)
T ss_dssp CHHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred CcHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHH
Confidence 678888887 89999999999999 8999999999999999654 566778899999999999954 68899999999
Q ss_pred HHHHHhCC-HHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 288 MLSIVATC-SEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 288 ~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
+|.+|+.. ++.+..+. ..|+++.|+.++.++++.+++.|+.+|.+|+.
T Consensus 161 aL~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99999986 77888887 56999999999999999999999999999984
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=2.6e-21 Score=203.34 Aligned_cols=270 Identities=13% Similarity=0.141 Sum_probs=217.9
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.+++.|.+++.+ .+..++..|+.. ++..+. . |+++.|+.+|.+ . +..+++.|+.+|.+++.+.+
T Consensus 116 ~i~~lv~~L~~~~~~--~r~~a~~~l~~~------~~~~i~-~-g~ip~Lv~lL~~-~--d~~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQM--LKHAVVNLINYQ------DDAELA-T-RAIPELTKLLND-E--DQVVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp ----------CCSCH--HHHHHHHHHHHH------HHHHHH-H-HHHHHHHHHHHC-S--CHHHHHHHHHHHHHHHTSHH
T ss_pred cHHHHHHHhcCccHH--HHHHHHHHHHhh------hHHHHH-h-CCHHHHHHHHCC-C--CHHHHHHHHHHHHHHhCCCh
Confidence 467788899887653 556666666533 333454 5 999999999987 4 45677999999999998654
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
. +..++...|+++.|+++|+++ +.+++..|+.+|.+|+.+++++..+.. .|+++.|+.+|+++ ++.++..|++
T Consensus 183 ~----~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~-~~~v~~~A~~ 256 (780)
T 2z6g_A 183 S----RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSP-VDSVLFHAIT 256 (780)
T ss_dssp H----HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred h----HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 3 556344568999999999876 899999999999999999888988888 79999999999998 8999999999
Q ss_pred HHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh-
Q 015939 245 ILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK- 321 (398)
Q Consensus 245 aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~- 321 (398)
+|.+|+... +.+..+++.|+++.|+++|.+ .+..+.+.++.+|.+|+. +++++..+. ..|+++.|+.+++.+++
T Consensus 257 aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~~~e~~~~i~-~~~~i~~Lv~lL~~~~~~ 333 (780)
T 2z6g_A 257 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIIL-ASGGPQALVNIMRTYTYE 333 (780)
T ss_dssp HHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHHTTCCCH
T ss_pred HHHHHhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcCCHH
Confidence 999999765 566666789999999999964 678899999999999996 689999988 46999999999987554
Q ss_pred hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..++.++.+|++|+.. ...+..+++.|+++.|+.+++.+ +...++.|..+|..+++
T Consensus 334 ~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 334 KLLWTTSRVLKVLSVC---SSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHHHHHHHHHHHTS---TTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcC---hHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence 4567899999999974 56788999999999999999876 78899999999999887
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.88 E-value=6.1e-23 Score=157.74 Aligned_cols=78 Identities=32% Similarity=0.402 Sum_probs=71.3
Q ss_pred cccccccCCCCcccccCccccCCCceecCCC-cccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 2 VRQELYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
..+.....+|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||+|++++...+++||..|++.|+.|+.+.
T Consensus 11 ~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred cchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 4455667899999999999999999999999 99999999999985 678999999999999999999999999998654
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.87 E-value=8.1e-23 Score=157.65 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=69.3
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
.....+|++|+||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...+++||..+++.|+.|+.++
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999984 678999999999999999999999999998654
No 37
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.87 E-value=8.6e-23 Score=153.02 Aligned_cols=75 Identities=31% Similarity=0.434 Sum_probs=69.1
Q ss_pred cccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhh
Q 015939 4 QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQ 79 (398)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 79 (398)
+.....+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...+++||..+++.|+.|+.+
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999999985 67899999999999999999999999999753
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.3e-20 Score=174.84 Aligned_cols=223 Identities=14% Similarity=0.120 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHH
Q 015939 148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSA 225 (398)
Q Consensus 148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~ 225 (398)
+....|+..|..++.+.+. ... +.+.|+++.|+. +|+++++++|..|+++|.+++.+ +..+..+.+ .|++++
T Consensus 55 e~k~~Al~~L~~lv~~~dn----a~~-~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~ 128 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN----AAD-FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH----HHH-HHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHH
T ss_pred HHHHHHHHHHHHHHhChhh----HHH-HHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHH
Confidence 4457888888888875543 444 678899999999 99999999999999999999987 668888887 899999
Q ss_pred HHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939 226 LFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALS 303 (398)
Q Consensus 226 Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~ 303 (398)
|+.+|++..++.+++.|+++|.+|+.+. +....+++.|+++.|+.+|+ +++..++..|+++|.+|+. +++.++.++
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999997547889999999999999765 46677889999999999995 4789999999999999987 567788888
Q ss_pred hccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhc-CCHH----HHHHHHhhcC-cHHHHHHHHHHHH
Q 015939 304 EEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNS-NGLT----KLLLVMQSEN-EGIVRKMCGDLVK 377 (398)
Q Consensus 304 ~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-g~~~----~Ll~~l~~~~-~~~~k~~A~~lL~ 377 (398)
+.|+++.|+.+|...+..+++.|+.+|.+|+... +..+...... ..+. .-+..++... .....++|..++.
T Consensus 207 -~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~--~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 207 -SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp -HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC--HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred -HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC--hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999752 3333332221 1122 2234445332 4677788888888
Q ss_pred HHhc
Q 015939 378 VLGK 381 (398)
Q Consensus 378 ~l~~ 381 (398)
.+..
T Consensus 284 ~~f~ 287 (296)
T 1xqr_A 284 TCFS 287 (296)
T ss_dssp HHCC
T ss_pred HHcC
Confidence 8775
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.3e-20 Score=190.05 Aligned_cols=329 Identities=11% Similarity=0.103 Sum_probs=244.2
Q ss_pred CCCcccchhHHHHH----HhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHcCCCCch
Q 015939 30 CTGVTYDRSSIQHW----LESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVP---EQEVRVWIEKIKSENESEN 102 (398)
Q Consensus 30 ~~g~~~~r~~i~~~----~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p~p---~~~i~~l~~~l~~~~~~~~ 102 (398)
.|.+.=||.+|.+. +.+.. +. +-..++++--+++-|....+.- ..-...+.+.|.++..+
T Consensus 283 ACi~~~cR~~I~~~~~~~L~~~l----------~~-~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~-- 349 (778)
T 3opb_A 283 ACIDETMRTYITENYLQLLERSL----------NV-EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVP-- 349 (778)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHT----------TS-GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHH--
T ss_pred HhCCcHHHHHHHHhHHHHHHHHh----------cc-HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCcc--
Confidence 47777788777663 32211 11 2356677777778786432211 23344455555554433
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH---------------
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK--------------- 167 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~--------------- 167 (398)
.+..|++.|..++.+ +..|+.+++..|+++.|+.+++...+. .+...++.+|.|++...+..
T Consensus 350 ~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~--s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~ 426 (778)
T 3opb_A 350 KVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMT--HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXX 426 (778)
T ss_dssp HHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCT--THHHHHHHHHHHTTCCCCCCCCCCC----------
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcc
Confidence 588899999999865 778888888768899999999852333 35688999999999754420
Q ss_pred --------------------HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939 168 --------------------EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227 (398)
Q Consensus 168 --------------------~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 227 (398)
+.+++. +.+.|++|.|+.+++++++.+|+.|+++|.+|+.++++|..+++ .|++++|+
T Consensus 427 ~~~p~~~~~d~~~~~~~~v~~~~~~~-l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~LL 504 (778)
T 3opb_A 427 XXXPAADKVGAEKAAKEDILLFNEKY-ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIIL 504 (778)
T ss_dssp --------CCTHHHHHHHHHHHHHHH-TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHHH
T ss_pred ccCcccCcccccccchHHHHHHHHHH-HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHH
Confidence 013444 77999999999999999999999999999999999999999998 89999999
Q ss_pred HHhccccCH--HHHHHHHHHHHHhcCCcchHHHHH--H-cCChHHHHHHhcccCcch------------hhHHHHHHHHH
Q 015939 228 DYLKLAEDQ--ALNDAILSILITLSVYRSVKAQLV--E-LGMVQILTRILSDSRTQI------------LTVEKSIKMLS 290 (398)
Q Consensus 228 ~lL~~~~~~--~~~~~a~~aL~~Ls~~~~~~~~~v--~-~g~v~~Lv~lL~~~~~~~------------~~~~~al~~L~ 290 (398)
.+|.++... ..+..|+.+|.+|....+....+- + .|+|++|+++|....... .-+..|+.+|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 999988322 278999999999986555444331 1 499999999996211111 12679999999
Q ss_pred HHhCCH-----HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHH-HHHHh------cCCHHHHHH
Q 015939 291 IVATCS-----EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVK-EAVVN------SNGLTKLLL 358 (398)
Q Consensus 291 ~La~~~-----~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~------~g~~~~Ll~ 358 (398)
||+..+ +.|+.|+.+.|+++.|+.+|.+.+..+++.|+.++.||+.+ ++.+ ..+.. .+.++.|+.
T Consensus 585 NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~---~e~i~~k~~~~~~~~~~~rL~lLV~ 661 (778)
T 3opb_A 585 NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH---PLTIAAKFFNLENPQSLRNFNILVK 661 (778)
T ss_dssp HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS---GGGTGGGTSCCSSHHHHHHHHHHHH
T ss_pred HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC---cHHHHHHHHhhcCchhhccHHHHHH
Confidence 999965 45788884349999999999999999999999999999974 3332 23332 224788999
Q ss_pred HHhhcCcHHHHHHHHHHHHHHh
Q 015939 359 VMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 359 ~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
+++++ +...|+.|+++|.++.
T Consensus 662 Ll~s~-D~~~r~AAagALAnLt 682 (778)
T 3opb_A 662 LLQLS-DVESQRAVAAIFANIA 682 (778)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHhc
Confidence 99876 8999999999999985
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.6e-20 Score=187.78 Aligned_cols=250 Identities=10% Similarity=0.085 Sum_probs=202.7
Q ss_pred hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChh---hHH
Q 015939 121 NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLD---SKI 197 (398)
Q Consensus 121 ~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~---~~~ 197 (398)
++..+.++ |+++.|+.++++ .+ ..+++.|+++|.+++.+.+ +|.. ++..|+++.|+.+|.+++.. .+.
T Consensus 449 ~~~~l~ea-GvIp~Lv~Ll~S-~s--~~~re~A~~aL~nLS~d~~----~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~ 519 (778)
T 3opb_A 449 NEKYILRT-ELISFLKREMHN-LS--PNCKQQVVRIIYNITRSKN----FIPQ-LAQQGAVKIILEYLANKQDIGEPIRI 519 (778)
T ss_dssp HHHHTTTT-THHHHHHHHGGG-SC--HHHHHHHHHHHHHHHTSGG----GHHH-HHHTTHHHHHHHHTTCC---CCHHHH
T ss_pred HHHHHHHC-cCHHHHHHHHcC-CC--HHHHHHHHHHHHHHcCCHH----HHHH-HHHCCCHHHHHHHHhcCCCcchHHHH
Confidence 67788999 999999999988 43 4566999999999997654 3777 77899999999999988654 799
Q ss_pred HHHHHHHHhhcCchhHHHhhc--hhhHHHHHHHHhccccCH-------------HHHHHHHHHHHHhcCCcc-----hHH
Q 015939 198 GSIKILDSISLDNESKRRVLE--TENLLSALFDYLKLAEDQ-------------ALNDAILSILITLSVYRS-----VKA 257 (398)
Q Consensus 198 ~a~~~L~~L~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~-------------~~~~~a~~aL~~Ls~~~~-----~~~ 257 (398)
.|+.+|.+|+...+....+.. ..|++++|+.+|....+. -.+..|+.||.||+..++ .+.
T Consensus 520 ~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~ 599 (778)
T 3opb_A 520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK 599 (778)
T ss_dssp HHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 999999999876555555532 248999999999831111 126799999999998763 478
Q ss_pred HHHHc-CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhcc-----CcHHHHHHHHhccChhHHHHHHHH
Q 015939 258 QLVEL-GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEA-----SCAGRVVERVMKVGKTAREDAVVV 330 (398)
Q Consensus 258 ~~v~~-g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~-----g~v~~Lv~~l~~~~~~~~~~a~~~ 330 (398)
.+++. |+++.|..+|. +++..+++.|+.++.||+.+++++ +.+.... +.++.||.++..++..+++.|+++
T Consensus 600 ~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA 677 (778)
T 3opb_A 600 HIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI 677 (778)
T ss_dssp HHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence 88985 99999999995 468899999999999999999886 4554221 248899999999999999999999
Q ss_pred HHHhhccCCChhHHHHHHhc-CCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhcCC
Q 015939 331 IWSMCCVYKDARVKEAVVNS-NGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGKAS 383 (398)
Q Consensus 331 L~~l~~~~~~~~~~~~~~~~-g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~~~ 383 (398)
|.+++... +.....+++. ++++.++.+++.. .++.++.++..++.+|.++.
T Consensus 678 LAnLts~~--~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 678 FANIATTI--PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHC--HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCC--hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 99997532 6777888886 8999999999882 48999999999999999853
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=1.7e-19 Score=167.45 Aligned_cols=183 Identities=12% Similarity=0.142 Sum_probs=163.8
Q ss_pred ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHH
Q 015939 192 NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILT 269 (398)
Q Consensus 192 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv 269 (398)
+.+.+..|+..|.++..+.+++..+.. .|++++|+. +|+++ +++++..|+++|.+++.+. ..+..+++.|+++.|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 456788999999999999888888877 899999999 99998 8999999999999999865 4777788999999999
Q ss_pred HHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHH
Q 015939 270 RILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVV 348 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 348 (398)
.+|++ +.+..+++.|+++|.+|+. ++...+.+. ..|+++.|+.+|.+++..++..|+++|.+++..+ ++.+..++
T Consensus 131 ~LL~~-~~~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv 206 (296)
T 1xqr_A 131 RLLDR-DACDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLC 206 (296)
T ss_dssp HHHHH-CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred HHHcc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHH
Confidence 99963 3478899999999999987 567777887 4799999999999999999999999999999863 68899999
Q ss_pred hcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 349 NSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 349 ~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.|+++.|+.+|.+. +..+++.|..+|..+..
T Consensus 207 ~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 207 SMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence 999999999999887 78999999999988877
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.83 E-value=2.7e-21 Score=163.52 Aligned_cols=77 Identities=25% Similarity=0.442 Sum_probs=70.1
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCC
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLT 81 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p 81 (398)
.....+|++|+||||+++|+|||+++|||||||.||++||..+..+||.|++++...+++||..++.+|..|+..++
T Consensus 98 ~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 98 RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 34578999999999999999999999999999999999997644589999999999999999999999999987553
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.82 E-value=1.1e-20 Score=139.76 Aligned_cols=74 Identities=49% Similarity=0.910 Sum_probs=69.2
Q ss_pred ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
..+++++|.||||.++|.|||+++|||+||+.||.+|+..+..+||.|++++...++.||..++++|+.|.+++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999999877889999999999999999999999999998754
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-20 Score=140.16 Aligned_cols=71 Identities=27% Similarity=0.510 Sum_probs=62.3
Q ss_pred CCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcC-----CCCCCc--cccc-CCCCCCcccHHHHHHHHHHHhh
Q 015939 9 AVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESG-----HDTCPA--TMQI-LSTKEFVPNLTLHRLIAHWSHQ 79 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~i~~~~~~ 79 (398)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ..+||+ |++. +...+++||..|++.|..|..+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3578999999999999999996 99999999999999642 468999 5544 8888999999999999999854
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=2.7e-19 Score=165.51 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=70.3
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCC
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLT 81 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p 81 (398)
.....+|++|+||||.++|+|||+++|||||||.||++|+..+..+||.|+++++..+++||..+++.|+.|+..++
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 34568899999999999999999999999999999999998766679999999999999999999999999997653
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=9.9e-17 Score=159.45 Aligned_cols=289 Identities=13% Similarity=0.171 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.|+.|..++++... .++++.|+..|+.++++ +|..++. ++++.|+..|+. ...+.+....++.+|.++...
T Consensus 20 ~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~-d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 20 AETIQKLCDRVASSTL-LDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQT-DRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCC
Confidence 6789999999988766 57999999999999865 7777775 789999999988 556778889999999887654
Q ss_pred cchHH--------------HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHH
Q 015939 164 NGVKE--------------KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALF 227 (398)
Q Consensus 164 ~~~~~--------------~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv 227 (398)
+++.+ .+...++.+.+.|+.|+++|++.+..+|.+++.+|..|+.+ + .....|...+++++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 43211 12224355789999999999999999999999999999877 3 37888886689999999
Q ss_pred HHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhccc--CcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939 228 DYLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDS--RTQILTVEKSIKMLSIVAT-CSEGRLALS 303 (398)
Q Consensus 228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~-~~~~~~~i~ 303 (398)
.+|++. ...++..++.+|.+|+.+..+.++++ -+|+++.|+.++... .....+++.|+.+|.+|.. ++.++..+.
T Consensus 173 ~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 173 DLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998 67799999999999999888777777 579999999999631 1234788999999999998 566888888
Q ss_pred hccCcHHHHHHHHhccChh------HHHH---HHHHHHHhhccCC----ChhHHHHHHhcCCHHHHHHHHhhc-CcHHHH
Q 015939 304 EEASCAGRVVERVMKVGKT------ARED---AVVVIWSMCCVYK----DARVKEAVVNSNGLTKLLLVMQSE-NEGIVR 369 (398)
Q Consensus 304 ~~~g~v~~Lv~~l~~~~~~------~~~~---a~~~L~~l~~~~~----~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k 369 (398)
+ .|+++.|..++..+.+. ...+ ++.++..+...++ +..+...+.+.|+++.|+.++-+. ....+|
T Consensus 252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 5 59999999988743221 2233 5556656665432 245778889999999999998654 345677
Q ss_pred HHHHHHHHHHhc
Q 015939 370 KMCGDLVKVLGK 381 (398)
Q Consensus 370 ~~A~~lL~~l~~ 381 (398)
..|...+..+.+
T Consensus 331 ~~Al~tla~~ir 342 (651)
T 3grl_A 331 TETINTVSEVIR 342 (651)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777666655544
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=126.23 Aligned_cols=74 Identities=23% Similarity=0.357 Sum_probs=66.5
Q ss_pred ccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccC-CCCCCcccHHHHHHHHHHHh
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQIL-STKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~i~~~~~ 78 (398)
+....++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|++.+ ...++.+|..++.+++.|..
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 45668899999999999999999999 9999999999999964 457899999998 56689999999999999975
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.66 E-value=1.6e-17 Score=115.44 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=49.1
Q ss_pred cccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccH
Q 015939 13 LFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNL 67 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~ 67 (398)
.|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|+++|...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 89999999999999975 34699999999999999875
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=128.81 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=63.5
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC-CCCcccHHHHHHHHHHHh
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST-KEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~ 78 (398)
.+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. .++.+|..++.+++.|.-
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 4567889999999999999999999999999999998656789999999987 688999999999998863
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-16 Score=141.52 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=63.2
Q ss_pred CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCc--ccccCCCCCCcccHHHHHHHHHHHh
Q 015939 9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPA--TMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
....+|+||||+++|+|||++ .|||+|||.||.+||.. +...||+ |++.+...++.||..|+++++.|..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 456789999999999999996 89999999999999975 3457999 9999999999999999999999964
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.60 E-value=4.2e-16 Score=129.46 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=63.5
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC-CCcccHHHHHHHHHHH
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRLIAHWS 77 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~ 77 (398)
.+++++.||||.++|.|||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++.+++.|.
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 45678899999999999999999999999999999987667899999999987 8899999999999886
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.58 E-value=3.6e-16 Score=124.34 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=67.3
Q ss_pred CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC-------CCCcccHHHHHHH
Q 015939 1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST-------KEFVPNLTLHRLI 73 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~i 73 (398)
|+.........++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+..+.. .+..+|..+...+
T Consensus 3 m~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i 82 (115)
T 3l11_A 3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII 82 (115)
T ss_dssp CCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred CcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence 566666677778999999999999999999999999999999998767889999999874 5667889899888
Q ss_pred HHHH
Q 015939 74 AHWS 77 (398)
Q Consensus 74 ~~~~ 77 (398)
+.|.
T Consensus 83 ~~~~ 86 (115)
T 3l11_A 83 QKHY 86 (115)
T ss_dssp HHHS
T ss_pred HHHC
Confidence 8884
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.57 E-value=9.1e-16 Score=118.59 Aligned_cols=69 Identities=17% Similarity=0.394 Sum_probs=62.9
Q ss_pred CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
.+++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+..+...++.+|..+.++++.|.+
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 455678999999999999998 89999999999999985 5789999999998889999999999999975
No 54
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.56 E-value=1.3e-15 Score=156.80 Aligned_cols=72 Identities=32% Similarity=0.422 Sum_probs=67.9
Q ss_pred cccCCCCcccccCccccCCCceecCCC-cccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
...++|++|+|||+.++|+|||++++| +||+|++|++|+.. ..+||.|+++|...+++||+++|..|+.|+.
T Consensus 884 ~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 884 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp HHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred cccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 468999999999999999999999998 69999999999976 6789999999999999999999999999985
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-16 Score=117.61 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=58.1
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcC------CCCCCcccccCCCCCCcccHHHHH
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG------HDTCPATMQILSTKEFVPNLTLHR 71 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~ 71 (398)
+....+++++.||||.+.|.+|++++|||+||+.||.+|+... ...||.|+..+...++.+|..+++
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3456788999999999999999999999999999999999752 568999999999888888876543
No 56
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=104.97 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=51.4
Q ss_pred cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l 63 (398)
....+++++.||||.+.+++||+++|||+||+.||.+|+..+...||.|+.++...++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3456788999999999999999999999999999999997567789999999877654
No 57
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=107.20 Aligned_cols=63 Identities=22% Similarity=0.424 Sum_probs=54.1
Q ss_pred CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcccccCCCCCC
Q 015939 1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTKEF 63 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~~~l 63 (398)
|+.+.....+++++.||||.+.|.+||+++|||+||+.||.+|+.. +...||.|++++...++
T Consensus 8 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4455566778899999999999999999999999999999999963 45689999999876654
No 58
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.53 E-value=2.7e-15 Score=117.83 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=63.0
Q ss_pred ccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCC----CCcccHHHHHHHHHHHh
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTK----EFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~~~~~ 78 (398)
...+++++.||||.++|.|||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+..++..|..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 34677899999999999999998 99999999999999986 47899999999876 67899999999988853
No 59
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.53 E-value=3.1e-12 Score=127.38 Aligned_cols=289 Identities=11% Similarity=0.123 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-----------------hhhhhhhcCCcHHHHHHHhhhccCCcH
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEA-----------------NRRFLASYGGFVEAVFGVLNRKRRSEI 147 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-----------------~r~~i~~~~g~v~~L~~lL~~~~~~~~ 147 (398)
..++.++..|+.+..+.+....++..|..+...++. +.+.+.+.++.++.|+.+|++ .+ -
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~d--f 136 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FD--F 136 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CC--H
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-cc--H
Confidence 346778888888766556677788888665443221 223444445899999999987 44 4
Q ss_pred HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939 148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227 (398)
Q Consensus 148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 227 (398)
.++-.++..|..++.+.+. ++++.|+..+++|+.|+++|++....+|..++.+|..|+.++..-..++...|+++.|+
T Consensus 137 ~vR~~alqlL~~L~~~r~~--~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGP--QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL 214 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHH--HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcH--HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence 5668999999999976554 35677677889999999999999999999999999999999655555555489999999
Q ss_pred HHhccc---cCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcc----hhhHHH---HHHHHHHHhCC-
Q 015939 228 DYLKLA---EDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQ----ILTVEK---SIKMLSIVATC- 295 (398)
Q Consensus 228 ~lL~~~---~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~----~~~~~~---al~~L~~La~~- 295 (398)
++++.. ....+...++.+|.+|..+. .|+..+.+.|+++.|..++...... +....+ ++.+++.|...
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 999875 23468899999999998765 5888888999999999999631111 112334 77788888663
Q ss_pred ------HHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcC---------CHHHHHH
Q 015939 296 ------SEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSN---------GLTKLLL 358 (398)
Q Consensus 296 ------~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g---------~~~~Ll~ 358 (398)
..++..+. +.|+++.|++++... ...++..|+.++..+...+ +.....+.+.. ++..|+.
T Consensus 295 ~~~~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN--~~~Q~~fa~~~vp~~~~~p~li~lL~~ 371 (651)
T 3grl_A 295 NPPGATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGC--QVNQDYFASVNAPSNPPRPAIVVLLMS 371 (651)
T ss_dssp SCHHHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHhhccCCCCCCcChHHHHHHH
Confidence 24566777 569999999999864 6788899999999988754 66777766532 2322333
Q ss_pred HHhhcCcHHHHHHHHHHHHHHhc
Q 015939 359 VMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 359 ~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++.+......|-.|+.+++.+-.
T Consensus 372 ~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 372 MVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HhcccccHHHHHHHHHHHHHHHh
Confidence 34444456778777777777653
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=7.9e-15 Score=106.75 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=51.8
Q ss_pred ccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccCCCC-CCccc
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQILSTK-EFVPN 66 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~-~l~~n 66 (398)
+....+++++.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|++++... .+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34567889999999999999999999 9999999999999975 346899999985543 44555
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.53 E-value=1e-15 Score=122.03 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=62.2
Q ss_pred cCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939 8 IAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH 78 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 78 (398)
..+.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.+|..+..++..+..
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 4566789999999999999999 9999999999999986 679999999988899999999999998853
No 62
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.53 E-value=2e-15 Score=116.66 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=60.8
Q ss_pred CCCCcccccCccccCCCcee-cCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 9 AVPNLFRCPISLDVMKSPVS-LCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
.+.+++.||||.++|.+||+ ++|||+||+.||.+|+......||.||.++...++.+|..+..+++...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHH
Confidence 45678999999999999999 9999999999999999875578999999999889999987777766553
No 63
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=1.3e-15 Score=114.18 Aligned_cols=66 Identities=27% Similarity=0.468 Sum_probs=57.5
Q ss_pred cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc-----CCCCCCcccccCCCCCCcccHHHHH
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-----GHDTCPATMQILSTKEFVPNLTLHR 71 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~ 71 (398)
....+.+++.||||.+.|.+|++++|||+||+.||.+|+.. +...||.|+..+...++.+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 44567889999999999999999999999999999999975 2568999999999888888875543
No 64
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=105.46 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=54.3
Q ss_pred ccccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
....++.+++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|++.+...++.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4556788899999999999999998 99999999999999975 6789999999998877665
No 65
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=102.53 Aligned_cols=54 Identities=26% Similarity=0.492 Sum_probs=46.7
Q ss_pred CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcc
Q 015939 1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPAT 54 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~ 54 (398)
|+.+.....+.+++.||||.+.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 8 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cchHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4445556678899999999999999999999999999999999974 45689987
No 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-15 Score=113.38 Aligned_cols=66 Identities=21% Similarity=0.483 Sum_probs=57.5
Q ss_pred cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc-----CCCCCCcccccCCCCCCcccHHHHH
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-----GHDTCPATMQILSTKEFVPNLTLHR 71 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~ 71 (398)
....+++++.||||.+.|.+|++++|||+||+.||.+|+.. +...||.|+..+...++.+|..++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 34577889999999999999999999999999999999864 3578999999999888888875543
No 67
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=106.44 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=54.1
Q ss_pred cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHH
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLH 70 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~ 70 (398)
...+...++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~ 70 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELM 70 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHH
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHH
Confidence 44566778999999999999999999999999999999975 678999999986 5677885443
No 68
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.50 E-value=8.5e-15 Score=116.83 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=63.2
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
..+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.+..+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4778889999999999999999999999999999999865568999999999988999998888887664
No 69
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.49 E-value=1e-14 Score=123.59 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=61.9
Q ss_pred CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCC-CCCcccHHHHHHHHHHHhh
Q 015939 9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILST-KEFVPNLTLHRLIAHWSHQ 79 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~~ 79 (398)
.+.+++.||||.++|.+||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.+|..+..+|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 455678999999999999998 9999999999999998767889999999864 4689999999999988643
No 70
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.46 E-value=3e-14 Score=116.92 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=54.2
Q ss_pred CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL 80 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 80 (398)
+.+++.||||.+.|.|||+++|||+||+.||.+|+.. ..+||.||.++...+ +|..+...+..+....
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKMVNNL 117 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHHHTTS
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHHHHHh
Confidence 3467899999999999999999999999999999975 678999999886442 4555555666554433
No 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.45 E-value=2.2e-14 Score=114.16 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=57.6
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc-ccHHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV-PNLTLHRLIAHW 76 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~~ 76 (398)
.++++++.||||.++|.|||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+...+..+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 345567899999999999999999999999999999987667899999999887764 466666665544
No 72
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=3.5e-14 Score=112.23 Aligned_cols=69 Identities=19% Similarity=0.422 Sum_probs=59.5
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
.+.+++.||||.+.|.+||+++|||+||+.||.+|+..+ ...||.|+.++...++.+|..+..+++.+.
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 345678999999999999999999999999999999743 368999999999988888877777776664
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=5.4e-14 Score=99.59 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred CcccccCccc-cCCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 12 NLFRCPISLD-VMKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 12 ~~~~Cpi~~~-~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
+++.||||.+ ++.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999987767789999999998887665
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.43 E-value=3.2e-14 Score=116.75 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=56.7
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC---------CCCcccHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST---------KEFVPNLTLHRLIAH 75 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~---------~~l~~n~~l~~~i~~ 75 (398)
..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.++..+++.|..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 36778999999999999999999999999999999998766789999987532 245577777766654
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=116.19 Aligned_cols=70 Identities=20% Similarity=0.385 Sum_probs=62.7
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS 77 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~ 77 (398)
..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.+..+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 4678899999999999999999999999999999999765669999999999988999988888777653
No 76
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.6e-13 Score=92.98 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=43.9
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcc
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPAT 54 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~ 54 (398)
.....+.+++.||||.+.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345577889999999999999999999999999999999864 46789987
No 77
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=99.67 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=50.2
Q ss_pred ccccCCCCcccccCccccCCC----ceecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCC
Q 015939 5 ELYIAVPNLFRCPISLDVMKS----PVSLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKE 62 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~ 62 (398)
.....+.+++.||||.+.|.+ |++++|||+||+.||.+|+... ...||.|++.+...+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 345678889999999999999 9999999999999999999753 468999999887543
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.34 E-value=3.7e-13 Score=97.05 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=51.1
Q ss_pred cCCCCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 8 IAVPNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
....+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.||.++...++.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 3556789999999999999 89999999999999999975 5689999999998887765
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6e-13 Score=95.90 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=46.7
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
....+++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 345678899999999999999999999999999999975 47899999987644
No 80
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.33 E-value=1.3e-12 Score=95.45 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=48.6
Q ss_pred ccCCCCcccccCccccC--CCceecC--CCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939 7 YIAVPNLFRCPISLDVM--KSPVSLC--TGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~--~dPv~~~--~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l 63 (398)
...+.+++.||||.+.+ .||++++ |||+||+.||.++|..+...||.||+++...++
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34568899999999999 5777776 999999999999997667889999999886654
No 81
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=93.49 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=47.8
Q ss_pred cccCCCCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 6 LYIAVPNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
....+++++.||||.+.|.+| ++++|||+||+.||.+|+.. ...||.|++++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 445677889999999999999 89999999999999999986 6789999988764
No 82
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=3.8e-12 Score=93.49 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=50.6
Q ss_pred cccCCCCcccccCccccCCCc---eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 6 LYIAVPNLFRCPISLDVMKSP---VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
.......++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.||..+...+..+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 445667789999999999987 45699999999999999975 5789999999988776654
No 83
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=92.08 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=48.2
Q ss_pred CcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 12 NLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
+++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999998 89999999999999999986 6789999999988776654
No 84
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=1.1e-09 Score=95.87 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=150.7
Q ss_pred CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939 129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL 208 (398)
Q Consensus 129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~ 208 (398)
++.++.|+..|++ .+ ..++..|+..|..+. ..+.++.|+.+|.+.+..+|..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~-~~--~~vR~~A~~~L~~~~---------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQD-DS--YYVRRAAAYALGKIG---------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp GGGHHHHHHHTTC-SS--HHHHHHHHHHHHHHC---------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHcC-CC--HHHHHHHHHHHHHhC---------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3789999999987 44 456688888886542 23568999999999999999999999988742
Q ss_pred CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939 209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM 288 (398)
Q Consensus 209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~ 288 (398)
.+.++.|+.+|.++ ++.++..++.+|..+.. .++++.|+.++. ++++.++..|+.+
T Consensus 80 -----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~a 135 (211)
T 3ltm_A 80 -----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALK--DEDWFVRIAAAFA 135 (211)
T ss_dssp -----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 46789999999988 89999999999998753 357899999994 4789999999999
Q ss_pred HHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHH
Q 015939 289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIV 368 (398)
Q Consensus 289 L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~ 368 (398)
|..+.. ...++.|+.++.+.++.++..|+.+|..+.. ..+++.|..+++.. ++.+
T Consensus 136 L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~-~~~v 190 (211)
T 3ltm_A 136 LGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETG-TGFA 190 (211)
T ss_dssp HHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHC-CHHH
T ss_pred HHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCC-CHHH
Confidence 998853 3578889999988999999999999988853 22456677777765 7999
Q ss_pred HHHHHHHHHHHhc
Q 015939 369 RKMCGDLVKVLGK 381 (398)
Q Consensus 369 k~~A~~lL~~l~~ 381 (398)
|..|...|..+..
T Consensus 191 r~~A~~aL~~~~~ 203 (211)
T 3ltm_A 191 RKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998877
No 85
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=2.8e-09 Score=92.57 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=150.3
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
+..+.++.+|++ .+ ..++..|+.+|..+. ..+.++.|+..|.++++.+|..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~-~~--~~vr~~A~~~L~~~~---------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQD-DS--YYVRRAAAYALGKIG---------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD- 74 (201)
T ss_dssp HHHHHHHHHTTC-SC--HHHHHHHHHHHHHHC---------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHhcC-CC--HHHHHHHHHHHHhcC---------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence 668888999988 44 456688998887543 23568999999999999999999999987642
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
.+.++.|+.+|.++ ++.++..|+++|..+.. ..+++.|+.+|. ++++.++..|+.+|
T Consensus 75 ----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 75 ----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALK--DEDWFVRIAAAFAL 131 (201)
T ss_dssp ----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 46789999999998 99999999999998753 347899999995 47899999999999
Q ss_pred HHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHH
Q 015939 290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVR 369 (398)
Q Consensus 290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k 369 (398)
..+.. ...++.|+.++.+.++.++..|+.+|..+.. ++ +++.|..+++.. ++.+|
T Consensus 132 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----~~---------~~~~L~~~l~d~-~~~vr 186 (201)
T 3ltj_A 132 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ER---------VRAAMEKLAETG-TGFAR 186 (201)
T ss_dssp HHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HH---------HHHHHHHHHHHC-CHHHH
T ss_pred HHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hh---------HHHHHHHHHhCC-CHHHH
Confidence 98853 4678899999999999999999999988842 22 566777778765 89999
Q ss_pred HHHHHHHHHHhc
Q 015939 370 KMCGDLVKVLGK 381 (398)
Q Consensus 370 ~~A~~lL~~l~~ 381 (398)
..|...|..+..
T Consensus 187 ~~A~~aL~~l~~ 198 (201)
T 3ltj_A 187 KVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 86
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=8.7e-12 Score=85.12 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
.+++.||||.+.|.+|++++|||+||+.||.+| ...||.|++.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467889999999999999999999999999884 56799999987644
No 87
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=87.81 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=49.5
Q ss_pred ccccccCCCCcccccCccccCCCceec---CCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 3 RQELYIAVPNLFRCPISLDVMKSPVSL---CTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 3 ~~~~~~~~~~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
......++..+..||||.+.|.+|..+ +|||.||+.||.+|+.. ..+||.||.++....
T Consensus 5 s~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 5 SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 344556778889999999999988766 99999999999999976 458999999886543
No 88
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.2e-12 Score=89.33 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=48.0
Q ss_pred ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
...+.+++.||||.+.+.+ ++++|||+||+.||.+|+. ....||.||.++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 4467788999999999999 9999999999999999997 4778999999988654
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=2.6e-09 Score=97.92 Aligned_cols=226 Identities=9% Similarity=-0.001 Sum_probs=152.3
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.++.+++.|.+++.. .+..|+..|..+.. . +.++.|+.+|++ .+ ..++..|+.+|..+.....
T Consensus 24 ~i~~L~~~L~~~~~~--vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d-~~--~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 24 NDDELFRLLDDHNSL--KRISSARVLQLRGG-----------Q-DAVRLAIEFCSD-KN--YIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp CHHHHHHHTTCSSHH--HHHHHHHHHHHHCC-----------H-HHHHHHHHHHTC-SS--HHHHHHHHHHHHHSCCCTT
T ss_pred hHHHHHHHHHcCCHH--HHHHHHHHHHccCC-----------c-hHHHHHHHHHcC-CC--HHHHHHHHHHHHHhccccc
Confidence 367788888776543 77888888887652 2 678888998887 43 4566889999987754222
Q ss_pred hHHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
.. . ..++.|.+ ++++.+..+|..++++|..+..... ... ..+++.|+.+|.++ ++.++..++.
T Consensus 87 ~~----~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~-~~~~~~L~~~l~d~-~~~vR~~a~~ 150 (280)
T 1oyz_A 87 CE----D------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYS-PKIVEQSQITAFDK-STNVRRATAF 150 (280)
T ss_dssp TH----H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred cc----h------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----ccc-HHHHHHHHHHhhCC-CHHHHHHHHH
Confidence 10 1 12344443 4566788999999999998864321 012 46788889999888 8889999999
Q ss_pred HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939 245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAR 324 (398)
Q Consensus 245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~ 324 (398)
+|.++.. .++++.|+.++. ++++.++..|+.+|..+... ...+++.|+.++.+.++.++
T Consensus 151 aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 151 AISVIND----------KATIPLLINLLK--DPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHH
T ss_pred HHHhcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHH
Confidence 9987643 358899999985 46788888999998887421 12456677777777888888
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..|+.+|..+.. ..+++.|+..++.. .+|..|...|..+..
T Consensus 210 ~~A~~aL~~~~~-------------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 210 IEAIIGLSYRKD-------------KRVLSVLCDELKKN---TVYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHTTC-------------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC-------------HhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence 888888877652 12445555555432 145555555555443
No 90
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.15 E-value=2.6e-09 Score=93.62 Aligned_cols=188 Identities=15% Similarity=0.079 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
.+.++.+++.|.+++. ..+..|+..|..+.. . ++++.|+.+|.+ . +..++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~-~--~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------E-RAVEPLIKALKD-E--DAWVRRAAADALGQIG-- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTC-S--CHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcC-C--CHHHHHHHHHHHHhhC--
Confidence 3567888999886654 478888888877642 2 778999999987 4 4566788998887653
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
..+.++.|+..|++.++.+|..|+.+|..+.. .+.++.|+.+|+++ ++.++..++
T Consensus 79 -------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~ 133 (211)
T 3ltm_A 79 -------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAA 133 (211)
T ss_dssp -------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHH
Confidence 23468899999999999999999999988742 46789999999888 899999999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
.+|..+.. ..+++.|+.++. ++++.++..|+.+|..+.. ..+++.|..++.+.++.+
T Consensus 134 ~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 134 FALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp HHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHH
Confidence 99999843 347899999994 4788999999999999853 346777888899999999
Q ss_pred HHHHHHHHHHhhccC
Q 015939 324 REDAVVVIWSMCCVY 338 (398)
Q Consensus 324 ~~~a~~~L~~l~~~~ 338 (398)
+..|..+|..+....
T Consensus 191 r~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 191 RKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999998887653
No 91
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.15 E-value=4.8e-09 Score=91.09 Aligned_cols=185 Identities=15% Similarity=0.082 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
....+.+++.|.+++.. .+..|+..|..+.. . +.++.|+.+|.+ . +..++..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~--vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~-~--~~~vr~~a~~~L~~~~-- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYY--VRRAAAYALGKIGD-----------E-RAVEPLIKALKD-E--DAWVRRAAADALGQIG-- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHH--HHHHHHHHHHHHCC-----------G-GGHHHHHHHTTC-S--SHHHHHHHHHHHHHHC--
T ss_pred CcchHHHHHHhcCCCHH--HHHHHHHHHHhcCC-----------h-hHHHHHHHHHcC-C--CHHHHHHHHHHHHhhC--
Confidence 56678899999888764 88888888876643 2 678999999976 4 4556788888886553
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
..+.++.|+..|.+.++.+|..|+++|..+.. ...++.|+.+|+++ ++.++..++
T Consensus 74 -------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~ 128 (201)
T 3ltj_A 74 -------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAA 128 (201)
T ss_dssp -------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHH
Confidence 23468899999999999999999999988642 45789999999888 899999999
Q ss_pred HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939 244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA 323 (398)
Q Consensus 244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~ 323 (398)
.+|..+.. .++++.|+.++. ++++.++..|+.+|..+.. ..+++.|..++.+.++.+
T Consensus 129 ~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~v 185 (201)
T 3ltj_A 129 FALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFA 185 (201)
T ss_dssp HHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHH
Confidence 99998853 458899999995 4788999999999999842 346777888888899999
Q ss_pred HHHHHHHHHHhh
Q 015939 324 REDAVVVIWSMC 335 (398)
Q Consensus 324 ~~~a~~~L~~l~ 335 (398)
+..|..+|..+.
T Consensus 186 r~~A~~aL~~l~ 197 (201)
T 3ltj_A 186 RKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 92
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.14 E-value=2.9e-11 Score=86.17 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=42.6
Q ss_pred CcccccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 12 NLFRCPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.+..||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 466899999999997 78899999999999999975 5789999988763
No 93
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.12 E-value=3.7e-11 Score=81.73 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=41.8
Q ss_pred CcccccCccccCCC----ceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKS----PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.+..||||.+.+.+ |++++|||.|++.||.+|+..+ ..||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999977 8899999999999999999864 78999998764
No 94
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=9.1e-11 Score=83.81 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=45.3
Q ss_pred ccCCCCcccccCccccCC---CceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 7 YIAVPNLFRCPISLDVMK---SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
..+...+..||||.+.|. +|++++|||.||+.||.+|+.. ..+||.|+..+...
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 345667789999999884 5688999999999999999976 55799999987654
No 95
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.10 E-value=6.1e-11 Score=80.64 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=42.7
Q ss_pred CCCcccccCccccCCC---ceecC-CCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 10 VPNLFRCPISLDVMKS---PVSLC-TGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~d---Pv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
+.++..||||.+.|.+ |++++ |||.|++.||.+|+.. ..+||.||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 4567889999999999 88897 9999999999999975 67899999875
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=2.4e-11 Score=98.77 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=48.7
Q ss_pred CCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 11 PNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
++++.||||.+.|.+| |+++|||+||+.||.+|+.. ..+||.|++.+...++.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5678999999999999 99999999999999999975 5689999999987766544
No 97
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.07 E-value=8.9e-11 Score=88.74 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=44.0
Q ss_pred CCCcccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 10 VPNLFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
..++..||||.+.|.+ +++++|||.||+.||.+|+.. ..+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4467789999999998 999999999999999999975 6689999988754
No 98
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.06 E-value=7e-09 Score=94.99 Aligned_cols=225 Identities=10% Similarity=-0.006 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
..++.+++.+.+.+.. .+..|+..|..+...... +. ..++.|...+.+ +.+..++..++.+|..+....
T Consensus 54 ~~~~~L~~~l~d~~~~--vR~~A~~aL~~l~~~~~~----~~---~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~ 122 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYI--RRDIGAFILGQIKICKKC----ED---NVFNILNNMALN--DKSACVRATAIESTAQRCKKN 122 (280)
T ss_dssp HHHHHHHHHHTCSSHH--HHHHHHHHHHHSCCCTTT----HH---HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHH--HHHHHHHHHHHhcccccc----ch---HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccC
Confidence 4677788888776543 778888888776532111 10 123333322222 345667899999999886432
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS 244 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~ 244 (398)
... ....++.|+..|++.++.+|..|+.+|..+.. .++++.|+.+|+++ ++.++..+++
T Consensus 123 ~~~---------~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~ 181 (280)
T 1oyz_A 123 PIY---------SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP-NGDVRNWAAF 181 (280)
T ss_dssp GGG---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-SHHHHHHHHH
T ss_pred Ccc---------cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 210 12458899999999999999999999987643 34789999999988 8999999999
Q ss_pred HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939 245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAR 324 (398)
Q Consensus 245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~ 324 (398)
+|..+.... ..+++.|+.++. ++++.++..|+.+|..+. +..+++.|+..+.+.+ ++
T Consensus 182 aL~~~~~~~--------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr 238 (280)
T 1oyz_A 182 AININKYDN--------SDIRDCFVEMLQ--DKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VY 238 (280)
T ss_dssp HHHHHTCCC--------HHHHHHHHHHTT--CSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CC
T ss_pred HHHhhccCc--------HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HH
Confidence 999885322 236788999995 478899999999998875 3468889999887643 88
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
..|+.+|..+.. ..+++.|..+++...++..+..+...|+
T Consensus 239 ~~a~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 239 DDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 899988887753 2568889999977667788887776654
No 99
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=1.3e-11 Score=89.49 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=42.8
Q ss_pred cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
..+.+++.||||.+.+.|||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 345567899999999999999999999 999999999 679999998764
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.03 E-value=7.2e-09 Score=107.13 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=146.9
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcC--CcchHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSV--YRSVKA 257 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~--~~~~~~ 257 (398)
|.++++.|++.+++.|..|+.+|.+|+.++..+..+.. .|++..++. +|.+. +.+++.+|+++|.||+. +.+.+.
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 44567789999999999999999999998888888877 788877654 67777 89999999999999985 457899
Q ss_pred HHHHcCChHHHHHHhcccCc-------------------chhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh
Q 015939 258 QLVELGMVQILTRILSDSRT-------------------QILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM 317 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~~~~-------------------~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~ 317 (398)
.+++.|++++|..++..... -..+.+.++.+|.+||. +++....+. ..|.++.|+..+.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRLLFRLI 192 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHHHHHHH
Confidence 99999999999999852100 01345678889999986 566677777 4689999999986
Q ss_pred c---cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH--HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 318 K---VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT--KLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 318 ~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~--~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
. ....++..|+.+|..++..+ ......+.+.|... .++..+..+ +...|.-++.+|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn--~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDN--LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccC--HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 5 34678999999999999754 67777788776532 333333444 3344556666776653
No 101
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.5e-11 Score=87.44 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred cccCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 6 LYIAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
....+.+++.||||.+.+.+||+++|||+ ||+.|+.++ ..||.||+++...
T Consensus 18 ~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 18 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred HHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 33455667899999999999999999999 999999643 6799999988653
No 102
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=83.99 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=43.8
Q ss_pred CCcccccCccccCCCc---eecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 11 PNLFRCPISLDVMKSP---VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
.++..||||.+.|.+| ++++|||.|++.||.+|+.. ..+||.||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 4567899999999998 88999999999999999976 56899999887653
No 103
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.02 E-value=2.2e-10 Score=90.53 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=43.9
Q ss_pred CCCcccccCccccCCCce------------------ecCCCcccchhHHHHHHhc----CCCCCCcccccCCCC
Q 015939 10 VPNLFRCPISLDVMKSPV------------------SLCTGVTYDRSSIQHWLES----GHDTCPATMQILSTK 61 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv------------------~~~~g~~~~r~~i~~~~~~----~~~~CP~~~~~l~~~ 61 (398)
.+.+..||||++.|.+|+ +++|||.||+.||.+|+.. +..+||.||..+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 445679999999999987 7899999999999999952 356899999988644
No 104
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.95 E-value=1.7e-08 Score=107.01 Aligned_cols=279 Identities=11% Similarity=0.094 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhh--hhh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRR--FLA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI 160 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~--~i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l 160 (398)
++-++.+++.+.+.+.. .+..++..|..++...+.... .+. ...+.++.|+.++++ .+..++..|+.+|..+
T Consensus 127 p~ll~~L~~~l~~~~~~--~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYN--TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQF 201 (852)
T ss_dssp TTHHHHHHHHHSCSSHH--HHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 34577777777766543 777888999988876443211 000 011456666666665 3456779999999887
Q ss_pred hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939 161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND 240 (398)
Q Consensus 161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 240 (398)
...... ...-.-.+.++.++.++.+++.++|..++.+|..++........ ....++++.++.++++. +++++.
T Consensus 202 ~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~-~~~vr~ 274 (852)
T 4fdd_A 202 IISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQ-DENVAL 274 (852)
T ss_dssp TTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG-GGHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHccCC-cHHHHH
Confidence 754332 11011235788899999889999999999999999876321111 11146788888888887 788999
Q ss_pred HHHHHHHHhcCCcchHH-------HHH-------------------H--------------------------------c
Q 015939 241 AILSILITLSVYRSVKA-------QLV-------------------E--------------------------------L 262 (398)
Q Consensus 241 ~a~~aL~~Ls~~~~~~~-------~~v-------------------~--------------------------------~ 262 (398)
.|+.++..++.....+. .++ + .
T Consensus 275 ~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~ 354 (852)
T 4fdd_A 275 EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD 354 (852)
T ss_dssp HHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH
Confidence 99988888864321111 000 0 0
Q ss_pred ----CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH-HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939 263 ----GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG-RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 263 ----g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~ 337 (398)
..++.+.+++. +++..+++.|+.+|.+++..... ..... .+.++.++..+.+.++.++..|+.+|.+++..
T Consensus 355 ~~~~~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 355 ELLPHILPLLKELLF--HHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp GGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 12333444442 35778888888888888874332 22222 36788899999889999999999999998853
Q ss_pred CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+... ....-.++++.|+..|+.+ ++.+|+.|...|..+.+
T Consensus 431 ~~~~~--~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 431 VVSQP--PDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHSC--TTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred hccch--HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 21000 0111135677788888765 78999999999998876
No 105
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.90 E-value=7.4e-10 Score=104.32 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=45.4
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
.+..||||.+.+.+||+++|||+||..||.+|+..+...||.||.++....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 347899999999999999999999999999999855778999999887543
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=2.6e-08 Score=103.00 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=142.4
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHH-HHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPL-FLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~-Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
.+.+++..|++ .+++.+ ..|+.+|.+|+.+.. .++. +...+++.. +..+|...+.++|..|+++|++|+.+
T Consensus 35 ~i~Pll~~L~S-~~~~~r--~~A~~al~~l~~~~~----~~~l-~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 35 KILPVLKDLKS-PDAKSR--TTAAGAIANIVQDAK----CRKL-LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp TTHHHHHHHSS-SCCSHH--HHHHHHHHHHTTSHH----HHHH-HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCC-CCHHHH--HHHHHHHHHHHcCcH----HHHH-HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 35567788888 665544 999999999997543 3566 556666655 55678888999999999999999876
Q ss_pred --chhHHHhhchhhHHHHHHHHhcccc-------------C-------HHHHHHHHHHHHHhcCCc-chHHHHHHcCChH
Q 015939 210 --NESKRRVLETENLLSALFDYLKLAE-------------D-------QALNDAILSILITLSVYR-SVKAQLVELGMVQ 266 (398)
Q Consensus 210 --~~~~~~i~~~~g~i~~Lv~lL~~~~-------------~-------~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~ 266 (398)
.+.+..+.. .|++++|..+|+... . .+....++.+|++||... +....+...|+++
T Consensus 107 ~g~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 107 EEADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred cCchHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 467777887 899999999986420 0 124456888999998654 4566777899999
Q ss_pred HHHHHhcccC-cchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHH--HHHHHHhccChhHHHHHHHHHHHhh
Q 015939 267 ILTRILSDSR-TQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAG--RVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 267 ~Lv~lL~~~~-~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~--~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
.|+..|.+.+ ...++...|+.+|..|+. +++..+.+..+ |... .++..+...+...+..++.+|+|+.
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~-~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD-QETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC-CSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc-chHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 9999985322 245799999999999998 56667777743 4332 2222234456666788999999975
No 107
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.84 E-value=5e-08 Score=103.43 Aligned_cols=269 Identities=11% Similarity=0.040 Sum_probs=176.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhh-hhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANR-RFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r-~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
++.++..+.+++. +.+..|++.|..++...+..- ..+. +.++.++.++++ . +..++..|+..+..++....
T Consensus 217 l~~l~~~~~d~~~--~vr~~a~~~L~~l~~~~~~~~~~~l~---~l~~~l~~~~~~-~--~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 217 IENLFALAGDEEP--EVRKNVCRALVMLLEVRMDRLLPHMH---NIVEYMLQRTQD-Q--DENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHHHHHHHTCCCH--HHHHHHHHHHHHHHHHCHHHHGGGHH---HHHHHHHHHHTC-S--SHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHcCCCCH--HHHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHccC-C--cHHHHHHHHHHHHHHhcchh
Confidence 3444444444433 477889999999887655432 2222 567777777766 3 35577999999988876432
Q ss_pred hHHHhhHhhhc--cCCChHHHHHHH-----------hc-----------CChhhHHHHHHHHHHhhcCchhHHHhhchhh
Q 015939 166 VKEKLNRLILN--TYNCLPLFLEIL-----------RE-----------GNLDSKIGSIKILDSISLDNESKRRVLETEN 221 (398)
Q Consensus 166 ~~~~~~~~il~--~~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g 221 (398)
. +.. +. -...+|.++..+ .. .+..+|..|+.+|..|+.... ..+. ..
T Consensus 289 ~----~~~-~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--~~ 359 (852)
T 4fdd_A 289 C----KDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--PH 359 (852)
T ss_dssp H----HHH-HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--HH
T ss_pred H----HHH-HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--HH
Confidence 2 222 21 123456666665 22 233568889999999987632 2222 45
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH--H
Q 015939 222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG--R 299 (398)
Q Consensus 222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~--~ 299 (398)
+++.+..++.+. ++..+.+|+.+|.+++........-.-.+.++.++.++. ++++.++..|+++|.+++..-.. .
T Consensus 360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhccchH
Confidence 788888889887 899999999999999876543221123457899999994 47899999999999999863211 1
Q ss_pred HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
.... .+.++.|++.+.+.++.+++.|+.+|.+++...+ ...... -.+.++.|+..++.. .......+...+..+
T Consensus 437 ~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~-~~l~~~--l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 437 DTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-TELVPY--LAYILDTLVFAFSKY-QHKNLLILYDAIGTL 510 (852)
T ss_dssp TTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-GGGGGG--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-HhhHhH--HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 1112 2578888888888899999999999999986533 222221 145677777777765 444444455555555
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
.+
T Consensus 511 ~~ 512 (852)
T 4fdd_A 511 AD 512 (852)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=6.5e-10 Score=90.22 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=48.9
Q ss_pred CCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 11 PNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
++.+.||||.+.+.+| ++++|||+||..||.+|+.. ..+||.|+..+...++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 4678899999999998 99999999999999999986 5699999999988777664
No 109
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.79 E-value=5.5e-08 Score=94.97 Aligned_cols=278 Identities=11% Similarity=0.055 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhh
Q 015939 85 QEVRVWIEKIKSE--NESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIV 161 (398)
Q Consensus 85 ~~i~~l~~~l~~~--~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~ 161 (398)
+-++.++..+.++ +. ..+..++..|..++... +..-.... +..++.++.+|.+ ..++..++..|+.++.++.
T Consensus 128 ~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRK-EEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp THHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHH
Confidence 4677888888876 43 37778999999988653 22111111 1467778888876 3224567799999998865
Q ss_pred cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--hHHHhhchh-hHHHHHHHHhccccCHHH
Q 015939 162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--SKRRVLETE-NLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~-g~i~~Lv~lL~~~~~~~~ 238 (398)
..-.+... .. ....-.++.+...+.+.+.++|..++.+|..++.... ....+ . ++++.++..+++. ++++
T Consensus 203 ~~~~~~~~--~~-~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v 275 (462)
T 1ibr_B 203 EFTKANFD--KE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEV 275 (462)
T ss_dssp TTTHHHHT--SH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred HHHHHhhh--hh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence 32221100 00 0001136666677777789999999999999886532 12222 3 6788888888777 8889
Q ss_pred HHHHHHHHHHhcCCcchH------------------HHHHH---cCChHHHHHHhccc-----CcchhhHHHHHHHHHHH
Q 015939 239 NDAILSILITLSVYRSVK------------------AQLVE---LGMVQILTRILSDS-----RTQILTVEKSIKMLSIV 292 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~------------------~~~v~---~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~L 292 (398)
+..++.++..++...... ..+++ ...+|.+++.|... +.+..++..|..+|..|
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 999999998887542100 00111 23567777777431 12346788899999888
Q ss_pred hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 293 ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 293 a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
+..-. ..+. ...++.+...+.+.+...++.|+.+|..++.... ++.....+ ..+++.++..|+.. ++.+|..|
T Consensus 356 ~~~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a 428 (462)
T 1ibr_B 356 ATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTA 428 (462)
T ss_dssp HHHTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-TTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHH
T ss_pred HHhcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-HHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHH
Confidence 76221 2333 2466777777777899999999999999996432 12111111 56788888888766 79999999
Q ss_pred HHHHHHHhc
Q 015939 373 GDLVKVLGK 381 (398)
Q Consensus 373 ~~lL~~l~~ 381 (398)
+++|..+.+
T Consensus 429 ~~~l~~~~~ 437 (462)
T 1ibr_B 429 AWTVGRICE 437 (462)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999988
No 110
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4e-09 Score=77.67 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=40.7
Q ss_pred CcccccCccccCCC--------------ceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKS--------------PVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d--------------Pv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
++-.|+||++.|.+ +++++ |||.|.+.||.+|+.. ..+||.||.++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45679999999988 55554 9999999999999986 56899999887643
No 111
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.76 E-value=5.5e-10 Score=81.73 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=44.4
Q ss_pred ccccCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+....+.++..|+||.+.+.|||+++|||. ||+.|+.+|+ .||.||.++...
T Consensus 10 ~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred HHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 344456677899999999999999999999 9999999874 899999987743
No 112
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.75 E-value=3.4e-07 Score=92.21 Aligned_cols=251 Identities=8% Similarity=0.010 Sum_probs=167.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
..+..|...|..++...+.. .+. . ..++.+..+..+ . +...+..|+.+|..+....... .+ ...+
T Consensus 102 ~vR~~a~~~L~~l~~~~~~~--~~~-~-~l~~~l~~l~~~-~--~~~~R~~a~~~l~~~~~~~~~~--~~------~~l~ 166 (588)
T 1b3u_A 102 VVRDKAVESLRAISHEHSPS--DLE-A-HFVPLVKRLAGG-D--WFTSRTSACGLFSVCYPRVSSA--VK------AELR 166 (588)
T ss_dssp HHHHHHHHHHHHHHTTSCHH--HHH-H-THHHHHHHHHTC-S--SHHHHHHHGGGHHHHTTTSCHH--HH------HHHH
T ss_pred HHHHHHHHHHHHHHHHCCHH--HHH-H-HHHHHHHHHhcC-C--CcHHHHHHHHHHHHHHHhcCHH--HH------HHHH
Confidence 47788888888888654321 122 1 345666565554 2 3455688888888777544321 12 2457
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE 261 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~ 261 (398)
+.+..++++.++.+|..|+.+|..++..-..... . ...++.|..+++++ ++.++..|+.+|..++...... ...
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~ 240 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE--DLE 240 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH--HHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH--HHH
Confidence 8888888888999999999999999876322221 2 56889999999888 8889999999999987532211 122
Q ss_pred cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh
Q 015939 262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA 341 (398)
Q Consensus 262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 341 (398)
...++.+..++. +.+..++..++.+|..++..-.. ..+. ...++.++.++.+.++.++..|+..|..++...+.
T Consensus 241 ~~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~- 314 (588)
T 1b3u_A 241 ALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA- 314 (588)
T ss_dssp HHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT-
T ss_pred HHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh-
Confidence 347888888884 46788999999999998762211 1122 35788999999999999999999999998875432
Q ss_pred hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 342 RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 342 ~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
+.+....-...++.+..+++.. +..+|..+...|..+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS 352 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 2111112233455555555443 5666666655554443
No 113
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.4e-09 Score=82.57 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=39.3
Q ss_pred CcccccCccccCCCceec---CCCcccchhHHHHHHh----cCC---CCCCc--cccc
Q 015939 12 NLFRCPISLDVMKSPVSL---CTGVTYDRSSIQHWLE----SGH---DTCPA--TMQI 57 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~----~~~---~~CP~--~~~~ 57 (398)
+.|.||||.+.+.+|+++ +|||+||+.|+.++|. +|. ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999999886 6999999999999985 232 36999 9877
No 114
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.71 E-value=8.1e-07 Score=89.43 Aligned_cols=222 Identities=12% Similarity=0.054 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~ 165 (398)
.+..++..|.+++.. .+..|+..|..++..-... ... . ..++.|...+ +.+..++..+...|..+...-.
T Consensus 11 ~i~~l~~~l~s~~~~--~R~~A~~~l~~i~~~~~~~-~~~--~-~l~~~L~~~~----d~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQ--LRLNSIKKLSTIALALGVE-RTR--S-ELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHHTTCSCHH--HHHHHHHTHHHHHHHSCHH-HHH--H-THHHHHHHTC----CCCHHHHHHHHHHHTTCSGGGT
T ss_pred cHHHHHHHhhcccHH--HHHHHHHhHHHHHHHhCHH-HHH--H-HHHHHHHHhc----CCcHHHHHHHHHHHHHHHhccC
Confidence 467788888887754 7888888887766421111 011 1 3455554443 3345677888888887764321
Q ss_pred hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
.. . .....++.|..++.+.+..+|..|+.+|..++..-.. ..+ . ...++.+..+..++ +...+..++.+
T Consensus 81 ~~----~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~-~~~-~-~~l~~~l~~l~~~~-~~~~R~~a~~~ 149 (588)
T 1b3u_A 81 GP----E---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP-SDL-E-AHFVPLVKRLAGGD-WFTSRTSACGL 149 (588)
T ss_dssp SG----G---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-HHH-H-HTHHHHHHHHHTCS-SHHHHHHHGGG
T ss_pred cH----H---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH-HHH-H-HHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 10 1 1234677777777778899999999999999876221 111 1 23455555666555 67777888887
Q ss_pred HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939 246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE 325 (398)
Q Consensus 246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~ 325 (398)
|..+...-... .....++.+..++. ++++.++..|+.+|..++..-... ... ...++.+..++.+.++.++.
T Consensus 150 l~~~~~~~~~~---~~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~-~~~--~~l~~~l~~~~~d~~~~vr~ 221 (588)
T 1b3u_A 150 FSVCYPRVSSA---VKAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLELD-NVK--SEIIPMFSNLASDEQDSVRL 221 (588)
T ss_dssp HHHHTTTSCHH---HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCHH-HHH--HTHHHHHHHHHTCSCHHHHT
T ss_pred HHHHHHhcCHH---HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhcHH-hHH--HHHHHHHHHHhcCCcHHHHH
Confidence 77776543321 12235666777773 467788888888888776521111 111 24666777777667777777
Q ss_pred HHHHHHHHhhc
Q 015939 326 DAVVVIWSMCC 336 (398)
Q Consensus 326 ~a~~~L~~l~~ 336 (398)
.|+.+|..++.
T Consensus 222 ~a~~~l~~l~~ 232 (588)
T 1b3u_A 222 LAVEACVNIAQ 232 (588)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.71 E-value=6.4e-09 Score=72.74 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCcccccCccccCCCceec--CCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939 11 PNLFRCPISLDVMKSPVSL--CTGVT-YDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
+++..|+||.+-++|+|++ +|||. ||..|+.+|+.. ...||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3566899999999999988 99999 899999999975 568999999875
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.69 E-value=7e-09 Score=72.31 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=41.8
Q ss_pred CcccccCccccCCCceec--CCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKSPVSL--CTGVT-YDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.+..|+||.+-++||+++ +|||. ||..|+.+|+.. ...||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 356799999999999998 99998 999999999875 478999999875
No 117
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=2.3e-09 Score=100.54 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=42.6
Q ss_pred cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
..+.+++.||||.+.+.+||+++|||+ ||+.|+.+| ..||.||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 345577899999999999999999999 999999988 579999998764
No 118
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.4e-08 Score=70.60 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=41.6
Q ss_pred cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
..-.++..|+||.+-..|||++||||. ||..|+.+ ...||.||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 344567899999999999999999999 99999984 4689999998764
No 119
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.59 E-value=3.4e-08 Score=76.28 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=39.9
Q ss_pred cccccCccccCCCc------------------eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 13 LFRCPISLDVMKSP------------------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
+-.|+||++.|.+| ++++|||.|.+.||.+|+.. +.+||.||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 44799999999987 44789999999999999975 678999998864
No 120
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.54 E-value=1.2e-05 Score=81.55 Aligned_cols=260 Identities=14% Similarity=0.109 Sum_probs=163.1
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939 89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE 168 (398)
Q Consensus 89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~ 168 (398)
.+.+.+.+.+. ..+..|+.++..+...+++ .+.+. +.++.|..+|.+ . +..++..|+.+|..++..++.
T Consensus 125 ~l~~~L~d~~~--~VRk~A~~al~~i~~~~p~---~~~~~-~~~~~l~~lL~d-~--d~~V~~~A~~aL~~i~~~~~~-- 193 (591)
T 2vgl_B 125 PLRKCLKDEDP--YVRKTAAVCVAKLHDINAQ---MVEDQ-GFLDSLRDLIAD-S--NPMVVANAVAALSEISESHPN-- 193 (591)
T ss_dssp HHHHHSSCSCH--HHHHHHHHHHHHHHHSSCC---CHHHH-HHHHHHHHTTSC-S--CHHHHHHHHHHHHHHTTSCCS--
T ss_pred HHHHHcCCCCh--HHHHHHHHHHHHHHhhChh---hcccc-cHHHHHHHHhCC-C--ChhHHHHHHHHHHHHHhhCCC--
Confidence 34455554443 3788899999998876544 33334 788999999976 3 456779999999999876543
Q ss_pred HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939 169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT 248 (398)
Q Consensus 169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~ 248 (398)
...+-...+.+..|+..|...++-.+.....+|..+...++. . ....++.+..+|++. ++.++..|++++..
T Consensus 194 --~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~---~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 194 --SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E---AQSICERVTPRLSHA-NSAVVLSAVKVLMK 265 (591)
T ss_dssp --CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H---HHHHHHHHTTCSCSS-TTHHHHHHHHHHHH
T ss_pred --ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 001011234577888888888888888777777777644321 1 146788888889887 88899999999999
Q ss_pred hcC----CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-C------------------HHHHHHHh--
Q 015939 249 LSV----YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-C------------------SEGRLALS-- 303 (398)
Q Consensus 249 Ls~----~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~------------------~~~~~~i~-- 303 (398)
+.. +++....++ ..+++.|+.++. +++.++..++..|..+.. + ...|....
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~ 341 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS---GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDI 341 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc---CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHH
Confidence 874 233333333 335677776653 467777777777777653 1 11111111
Q ss_pred ----hccC----cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHH
Q 015939 304 ----EEAS----CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDL 375 (398)
Q Consensus 304 ----~~~g----~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~l 375 (398)
.+.. .++.|..++.+.+...+..++..+..++... +... ...++.|+.+++.. +..++..+...
T Consensus 342 L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~--~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~ 413 (591)
T 2vgl_B 342 MIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV--EQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVV 413 (591)
T ss_dssp HHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC--HHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--hhHH-----HHHHHHHHHHHccc-chHHHHHHHHH
Confidence 0122 2334445555678889999999998888643 1111 23456666666655 34444444444
Q ss_pred HHHH
Q 015939 376 VKVL 379 (398)
Q Consensus 376 L~~l 379 (398)
++.+
T Consensus 414 l~~i 417 (591)
T 2vgl_B 414 IRDI 417 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 121
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.53 E-value=6.4e-07 Score=91.02 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=154.6
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
..++.+..+|.+ . ++.++..|+.++..+....++ . +.+.++++.|..+|.+.++.++..|+.+|..++.+
T Consensus 121 ~l~~~l~~~L~d-~--~~~VRk~A~~al~~i~~~~p~------~-~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 121 YLCEPLRKCLKD-E--DPYVRKTAAVCVAKLHDINAQ------M-VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHSSC-S--CHHHHHHHHHHHHHHHHSSCC------C-HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCC-C--ChHHHHHHHHHHHHHHhhChh------h-cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 345667777776 3 456779999999998875443 1 22347889999999988999999999999999887
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
......+.-..+.+..|+..|.+. ++-.+...+++|..++..++.- ....++.+..+++ +.++.++..|+.++
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~--~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLS--HANSAVVLSAVKVL 263 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSC--SSTTHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHc--CCChHHHHHHHHHH
Confidence 432111222256788888888877 7888888889888887543311 1235677777784 46789999999999
Q ss_pred HHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC----------------ChhHHHHHHh
Q 015939 290 SIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK----------------DARVKEAVVN 349 (398)
Q Consensus 290 ~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~~~~ 349 (398)
..+.. +++..+.+. ....+.|+.++ ++++.++..|+..|..+....+ +..++...++
T Consensus 264 ~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~ 340 (591)
T 2vgl_B 264 MKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340 (591)
T ss_dssp HHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred HHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence 99873 344444444 24566777654 4778888888888877764321 1112222222
Q ss_pred -------cC----CHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 350 -------SN----GLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 350 -------~g----~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.. +++.|...++.. +...|+.+...+..++.
T Consensus 341 ~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 341 IMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp HHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 22 344455555444 67888888877777765
No 122
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.48 E-value=4.4e-05 Score=77.82 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=155.1
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+..+.+.|.+++.. .+..|+..|..+... .+.+ ..++.+..+|.+ . ++.++..|+.++..+....++
T Consensus 109 in~l~kDL~~~n~~--vr~lAL~~L~~i~~~------~~~~--~l~~~l~~~L~~-~--~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 109 TNCIKNDLNHSTQF--VQGLALCTLGCMGSS------EMCR--DLAGEVEKLLKT-S--NSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HHHHHHHHSCSSSH--HHHHHHHHHHHHCCH------HHHH--HHHHHHHHHHHS-C--CHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhcCCCCHh--HHHHHHHHHHhcCCH------HHHH--HHHHHHHHHHcC-C--CHHHHHHHHHHHHHHHHHChH
Confidence 44566667766654 667777787777632 1222 567788888887 4 356779999999999865443
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhcc-------------
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKL------------- 232 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~------------- 232 (398)
. + .++++.+..+|.+.++.++..|+.+|..++..+ +....+ ...++.|+.+|.+
T Consensus 176 ------~-v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 176 ------L-M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp ------G-G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred ------H-H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence 1 1 267888889999889999999999999998763 221222 3567778877764
Q ss_pred -ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939 233 -AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSEGRLALSEEAS 307 (398)
Q Consensus 233 -~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g 307 (398)
-.++-.+...+.+|..++..+... ....++.|..++.. .+.+..++..|..++..+...+..+. .
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~------~ 313 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV------L 313 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH------H
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH------H
Confidence 126778888999999998654321 12244555555531 12344666677777777655433221 2
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|..++.+.++.++..|+..|..++... + .+++ .....++..+... +..+|..|..+|..+..
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--p----~~~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTD--H----NAVQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--H----HHHG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhC--H----HHHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence 4556666666667777777777776666431 1 1111 1333444444433 45555555555544443
No 123
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.42 E-value=1.9e-05 Score=83.38 Aligned_cols=278 Identities=11% Similarity=0.075 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhh
Q 015939 85 QEVRVWIEKIKSE--NESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIV 161 (398)
Q Consensus 85 ~~i~~l~~~l~~~--~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~ 161 (398)
+-++.++..+.++ +. ..+..++..+..++..- +.. .-...+..++.+...+.+ .+++..++..|+.+|..+.
T Consensus 128 ~ll~~l~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~--~~~~~~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQ--LQDKSNEILTAIIQGMRK-EEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp THHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCHHH--HGGGHHHHHHHHHHHHST-TCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhcCHhh--HHhHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHH
Confidence 4677788888776 43 37788888998888642 111 111112456677777766 3224567789999998876
Q ss_pred cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h-hHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939 162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-E-SKRRVLETENLLSALFDYLKLAEDQALN 239 (398)
Q Consensus 162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 239 (398)
..-..+ .... ......++.+...+...+.++|..++.+|..+.... + ....+. ..+++.++..+.+. ++.++
T Consensus 203 ~~~~~~--~~~~-~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~-~~~v~ 276 (876)
T 1qgr_A 203 EFTKAN--FDKE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSD-IDEVA 276 (876)
T ss_dssp GGCHHH--HTSH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCS-SHHHH
T ss_pred HHHHHH--HHhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCC-chHHH
Confidence 432211 0000 001125777777777778999999999999888652 2 222221 26788888887776 78899
Q ss_pred HHHHHHHHHhcCCcc----------------------hHHHHHHcCChHHHHHHhccc-----CcchhhHHHHHHHHHHH
Q 015939 240 DAILSILITLSVYRS----------------------VKAQLVELGMVQILTRILSDS-----RTQILTVEKSIKMLSIV 292 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~----------------------~~~~~v~~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~L 292 (398)
..++.++..++.... ...... ...++.++..|... +.+..++..|..+|..+
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 999999988864320 001111 23567777887421 23457888888888888
Q ss_pred hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939 293 ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC 372 (398)
Q Consensus 293 a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A 372 (398)
+..-. ..+. ...++.+...+.+.+..+++.|+.+|..++...+ ++...... ...++.++..++.. ++.+|..|
T Consensus 356 ~~~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a 428 (876)
T 1qgr_A 356 ATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTA 428 (876)
T ss_dssp HHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHH
Confidence 76322 1222 2456666666777889999999999999986532 22222222 34788888888765 78999999
Q ss_pred HHHHHHHhc
Q 015939 373 GDLVKVLGK 381 (398)
Q Consensus 373 ~~lL~~l~~ 381 (398)
..+|..+.+
T Consensus 429 ~~~l~~~~~ 437 (876)
T 1qgr_A 429 AWTVGRICE 437 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 124
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.39 E-value=9.6e-06 Score=70.32 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=140.9
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V 255 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~ 255 (398)
+.+..|..+|+..|..++.++..+|..+... +.-+..+. ..+++.+++++++. |..+.-.|+++|..|-.+.+ .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCC
Confidence 4578899999999999999999999988776 33333333 57899999999998 88999999999999975543 3
Q ss_pred HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
...+.. .+.+|.+++. +.++-+.+++...|.-|-... . ..+.+..+.+++.+.+..++..|+++|.+++
T Consensus 110 ~~~y~K--l~~aL~dlik--~~~~il~~eaae~Lgklkv~~-----~--~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLE--SPDDMMRIETIDVLSKLQPLE-----D--SKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHHH--HHHHHHHHTT--SCCHHHHHHHHHHHHHCCBSC-----C--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHH--HHHHHHHHhc--CCCchHHHHHHHHhCcCCccc-----c--hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 333332 5678999995 478899999999999882210 0 1245556777887789999999999999999
Q ss_pred ccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 336 CVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 336 ~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
..++|.+....+ +.-+-.+|++. ++.++++|..+|-.+..+
T Consensus 179 ~~S~D~~i~~~I-----~~eI~elL~~e-D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 179 NSSADSGHLTLI-----LDEIPSLLQND-NEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGCSSCCCGGGT-----TTTHHHHHTCS-CHHHHHHHHHHHHHHTTS
T ss_pred cccCCHHHHHHH-----HHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 988776665543 34466667777 899999999888777664
No 125
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.36 E-value=4.4e-05 Score=77.85 Aligned_cols=250 Identities=12% Similarity=0.107 Sum_probs=167.0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
++.+.+.+.+.+.. .+..|+.++..+...+++... +.++.+..+|.+ .+..++..|+.+|..++..+++
T Consensus 144 ~~~l~~~L~~~~~~--VRk~A~~al~~l~~~~p~~v~------~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 144 AGEVEKLLKTSNSY--LRKKAALCAVHVIRKVPELME------MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHHHHHHHHSCCHH--HHHHHHHHHHHHHHHCGGGGG------GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHChHHHH------HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChH
Confidence 34455556665543 788899999999877654321 456666777765 4456779999999999875443
Q ss_pred HHHhhHhhhccCCChHHHHHHHhc---------------CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc
Q 015939 167 KEKLNRLILNTYNCLPLFLEILRE---------------GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK 231 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~ 231 (398)
. ... + ...++.++.+|.. .++-.+...+.+|..+...+.... ...++.|..++.
T Consensus 213 ~---~~~-~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~ 281 (618)
T 1w63_A 213 M---LAH-F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVAT 281 (618)
T ss_dssp H---HHH-H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHH
T ss_pred H---HHH-H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHh
Confidence 1 112 1 2578888888864 367778888889998887632111 223344444443
Q ss_pred ------cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc
Q 015939 232 ------LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE 305 (398)
Q Consensus 232 ------~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~ 305 (398)
+. +..++-.+++++..+...+.. .. .++..|..+|. +.++.++..|+..|..++... ..++.
T Consensus 282 ~~~~~~~~-~~aV~~ea~~~i~~l~~~~~l----~~-~a~~~L~~~L~--~~d~~vr~~aL~~L~~i~~~~---p~~~~- 349 (618)
T 1w63_A 282 NTETSKNV-GNAILYETVLTIMDIKSESGL----RV-LAINILGRFLL--NNDKNIRYVALTSLLKTVQTD---HNAVQ- 349 (618)
T ss_dssp TSCCSSTH-HHHHHHHHHHHHHHSCCCHHH----HH-HHHHHHHHHHT--CSSTTTHHHHHHHHHHHHHHH---HHHHG-
T ss_pred ccccccch-HHHHHHHHHHHHHhcCCCHHH----HH-HHHHHHHHHHh--CCCCchHHHHHHHHHHHHhhC---HHHHH-
Confidence 22 457888889999887654322 22 36788888884 468899999999999888621 22331
Q ss_pred cCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 306 ASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 306 ~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.....++..+.+.+..++..|+.+|..++... .... ++..|+..+... +...|..+...+..++.
T Consensus 350 -~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~----nv~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 350 -RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN----NIRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAE 414 (618)
T ss_dssp -GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS----STHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHcccc----cHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 35667777788888999999999999998642 2222 236677777655 67888888777777765
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.34 E-value=8.2e-06 Score=79.40 Aligned_cols=273 Identities=9% Similarity=-0.005 Sum_probs=171.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..++..+.+++.+ .+.+|-..|..+...+ .+|+...|+.++.+ .+.+..++..|...|.++.......
T Consensus 4 ~~~L~~~~s~d~~--~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 4 ITILEKTVSPDRL--ELEAAQKFLERAAVEN---------LPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHTTCSCHH--HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHH--HHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchH
Confidence 3455555555543 7778888888765421 22677788888877 4445567788888888886432110
Q ss_pred HH--hhH--hhhc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHH
Q 015939 168 EK--LNR--LILN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALN 239 (398)
Q Consensus 168 ~~--~~~--~il~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~ 239 (398)
.. ... ..+. ...+-..|+..|.+.+..+ ..++.+|..++..+... ..-.+.++.|+..+.++. ++..+
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r 147 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHH
Confidence 00 000 0010 1223455778888887778 88999999998763211 112578999999998764 67899
Q ss_pred HHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHH-HHhhccCcHHHHHHH
Q 015939 240 DAILSILITLSVYR--SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRL-ALSEEASCAGRVVER 315 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~-~i~~~~g~v~~Lv~~ 315 (398)
..++.+|..++..- +.-.... ...++.++..+.+...++.++..|+.+|.++... ..... ... ..-.++.+...
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE-RHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHh
Confidence 99999999997532 1111111 2367888888864212688999999999987642 21110 111 01135555566
Q ss_pred HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 316 VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 316 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+.+.++.++..++.+|..++...+ ...... +..++++.++..++.. ++.++..|...+..+.+
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~-~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYY-QYMETY-MGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD 288 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCG-GGCTTT-TTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH
Confidence 666789999999999999886542 111111 1115677777777655 78899999888777765
No 127
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.33 E-value=6.1e-06 Score=87.01 Aligned_cols=265 Identities=9% Similarity=0.076 Sum_probs=167.9
Q ss_pred CchhHHHHHHHHHHHhhhhh-h-hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc
Q 015939 100 SENSCVDYLVKVAKFATGCE-A-NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT 177 (398)
Q Consensus 100 ~~~~~~~al~~L~~l~~~~~-~-~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~ 177 (398)
+|..+..|+..+..++.... . ....+. .+++.|+..+.+ ++..++..++.+|..++..-...-.... .-
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~---~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~ 452 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVH---QALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQ---HL 452 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHH---HHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTT---TH
T ss_pred ChhHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHH---HH
Confidence 36688889999999885521 1 222222 457777777765 3456778899999888753211000000 12
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--hHHHhh-chhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCc
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--SKRRVL-ETENLLSALFDYLKLA-EDQALNDAILSILITLSVYR 253 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~-~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~ 253 (398)
..+++.++..|++. +.++..|+++|..++..-. ....+. ....+++.|+.++++. .++.++..++.+|..+....
T Consensus 453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 34678888888765 8899999999998876511 011111 1146788899999854 23678999999999996432
Q ss_pred -chHHHHHHcCChHHHHHHhccc-------------CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc
Q 015939 254 -SVKAQLVELGMVQILTRILSDS-------------RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK 318 (398)
Q Consensus 254 -~~~~~~v~~g~v~~Lv~lL~~~-------------~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~ 318 (398)
+.....+. ..++.+++.+... +....++..++.+|..++. .+....... ...++.++..+..
T Consensus 532 ~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 532 TDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEK 608 (861)
T ss_dssp CGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHS
T ss_pred chhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHcc
Confidence 22223332 3667777776421 1134566788888888875 222111222 2466777787877
Q ss_pred cCh-hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 319 VGK-TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 319 ~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+. .+++.++.++..++...+ .+....+- ..++.++..++.. ++.+|..|..++..+.+
T Consensus 609 ~~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~--~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 609 KDSAFIEDDVFYAISALAASLG-KGFEKYLE--TFSPYLLKALNQV-DSPVSITAVGFIADISN 668 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHG-GGGHHHHH--HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHh-hhHHHHHH--HHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence 666 889999999988886543 23333222 2778888888644 67888889888887766
No 128
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=6e-07 Score=65.40 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCcccccCccccC--CCceecCCC-----cccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939 11 PNLFRCPISLDVM--KSPVSLCTG-----VTYDRSSIQHWLES-GHDTCPATMQILSTK 61 (398)
Q Consensus 11 ~~~~~Cpi~~~~~--~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~ 61 (398)
.++..|+||.+-+ .+|++++|+ |.|-+.||.+|+.. +..+||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3456899999877 579999996 99999999999975 447899999988744
No 129
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.28 E-value=7.8e-06 Score=70.88 Aligned_cols=226 Identities=12% Similarity=0.107 Sum_probs=157.8
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
+.+..|..+|.. .| ..+..+++.+|..+...-++.. +. ..-...++.++.++.+.+..+..+|.++|..|..+
T Consensus 33 ~~l~~L~~LL~d-kD--~~vk~raL~~LeellK~~~~~l--~~--~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 33 RALFLILELAGE-DD--ETTRLRAFVALGEILKRADSDL--RM--MVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHHTTS-SC--HHHHHHHHHHHHHHHHHSCHHH--HH--HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhc-cc--hHHHHHHHHHHHHHHHhccccc--cH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 556777888876 44 4567999999998887633310 11 22346799999999999999999999999988877
Q ss_pred -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939 210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM 288 (398)
Q Consensus 210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~ 288 (398)
+-....+. -++.+|.++++++ ++-.+..++..|..|......+. .+..+.+++ .+.+..++..++.+
T Consensus 106 vpL~~~~y~---Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl--~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 106 VPMGSKTFL---KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSKL------VRTYINELV--VSPDLYTKVAGFCL 173 (265)
T ss_dssp CCBCHHHHH---HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHH--TCSSHHHHHHHHHH
T ss_pred CCCCHHHHH---HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchHH------HHHHHHHHH--hCCChhHHHHHHHH
Confidence 44444443 3678899999987 88899999999999954444433 567888999 45899999999999
Q ss_pred HHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh-hcCcHH
Q 015939 289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ-SENEGI 367 (398)
Q Consensus 289 L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~-~~~~~~ 367 (398)
|.+++...+...-+- +.+.-+-.++.+.++..++.|+.+|..+....=-++....+ -.+-..+.-+- -.|.+.
T Consensus 174 L~eia~~S~D~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~ 247 (265)
T 3b2a_A 174 FLNMLNSSADSGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPI 247 (265)
T ss_dssp HHHHGGGCSSCCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHH
T ss_pred HHHhhcccCCHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChh
Confidence 999997332221111 33444667788889999999999999988752111222221 12222333332 345788
Q ss_pred HHHHHHHHHHHHh
Q 015939 368 VRKMCGDLVKVLG 380 (398)
Q Consensus 368 ~k~~A~~lL~~l~ 380 (398)
++.+|..+...+-
T Consensus 248 ~~~ka~~v~~~le 260 (265)
T 3b2a_A 248 IRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987765543
No 130
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.27 E-value=2.2e-05 Score=82.95 Aligned_cols=275 Identities=11% Similarity=0.068 Sum_probs=173.6
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~ 166 (398)
+.+...+...+.+.+.+..|++.+..++..-..+ ....... .+++.+...+.+ .+.+++..++.+|..+......
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~~~~---~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQC---PDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH-HHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhHH
Confidence 3344445444222346788888888876431111 1111111 245666666544 3456778899999888764332
Q ss_pred HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh----------------H---HHhh-chhhHHHHH
Q 015939 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES----------------K---RRVL-ETENLLSAL 226 (398)
Q Consensus 167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~----------------~---~~i~-~~~g~i~~L 226 (398)
. .... + ....++.++..+.+.+.+++..|+.++..++..... + ..+. .....++.+
T Consensus 251 ~--~~~~-~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 326 (876)
T 1qgr_A 251 Y--METY-M-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (876)
T ss_dssp G--CHHH-H-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred H--HHHH-H-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence 1 1111 1 236788888888877889999999999888754200 0 0000 013467778
Q ss_pred HHHhccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC--HHH
Q 015939 227 FDYLKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC--SEG 298 (398)
Q Consensus 227 v~lL~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~--~~~ 298 (398)
+..|... .+...+.+|..+|..++..... .++. ..++.+...+. +.+..+++.|+.+|..++.. ++.
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHH
Confidence 8887532 2456888999999988653221 1122 35566667774 46889999999999999874 233
Q ss_pred HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhH-HHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARV-KEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
..... ...++.++..+.+.++.++..|+.+|.+++...+. .. ... .-..+++.++..|+. ++.+|..|.++|.
T Consensus 402 ~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~-~l~~~l~~l~~~l~~--~~~v~~~a~~al~ 475 (876)
T 1qgr_A 402 LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-AAINDV-YLAPLLQCLIEGLSA--EPRVASNVCWAFS 475 (876)
T ss_dssp HHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG-GTSSTT-THHHHHHHHHHHTTS--CHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch-hcccHH-HHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 33444 35899999999989999999999999999875321 10 000 012456777777765 3788999999888
Q ss_pred HHhc
Q 015939 378 VLGK 381 (398)
Q Consensus 378 ~l~~ 381 (398)
.+.+
T Consensus 476 ~l~~ 479 (876)
T 1qgr_A 476 SLAE 479 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 131
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.25 E-value=1.3e-07 Score=74.09 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred ccccCccccCCCce-----------------e-cCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPV-----------------S-LCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv-----------------~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
-.|+||++.|.+|. + ++|||.|.+.||.+|+.. +.+||.||..+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 37999999999853 2 589999999999999976 678999998754
No 132
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.24 E-value=2.9e-05 Score=81.84 Aligned_cols=278 Identities=9% Similarity=0.073 Sum_probs=169.6
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------c----CCcHHHHHHH
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------R----RSEIAVLESA 153 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~----~~~~~~~~~a 153 (398)
-++.++..+.+.+.+...+..++..|..++...+........ ..++.++..|.+. . +....++..+
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 345566666654432336777888888877654432222221 4577777777641 0 1123455678
Q ss_pred HHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHh
Q 015939 154 VRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYL 230 (398)
Q Consensus 154 l~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL 230 (398)
+.+|..++..-+.. .... -...++.++..++..+. .+++.+..++..++..- +....+ ...++.|+..|
T Consensus 577 ~~~l~~l~~~~~~~--~~~~---~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l 648 (861)
T 2bpt_A 577 LTVLAAVIRKSPSS--VEPV---ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHHHCGGG--TGGG---HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh--hHHH---HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHh
Confidence 88888777543321 1111 23567888888988876 89999999999887652 222222 45888999999
Q ss_pred ccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCc
Q 015939 231 KLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASC 308 (398)
Q Consensus 231 ~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~ 308 (398)
.+. +++++..++.++..++..- +.-...+ ...++.+++.+.+.+.++.++..++.+|..++..- +.-.... ...
T Consensus 649 ~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~ 724 (861)
T 2bpt_A 649 NQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDI 724 (861)
T ss_dssp HCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHH
T ss_pred ccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHH
Confidence 766 7789999999999886432 2211222 34677788888642235889999999999988632 2222233 246
Q ss_pred HHHHHHHHhccC-----------hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHH----HHhhcC---cHHHHH
Q 015939 309 AGRVVERVMKVG-----------KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLL----VMQSEN---EGIVRK 370 (398)
Q Consensus 309 v~~Lv~~l~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~----~l~~~~---~~~~k~ 370 (398)
++.++..+.... ..+++.++.++..++..-++. ..... ..++.++. .++... +..+|+
T Consensus 725 l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~-~~~~~i~~~l~~~~~d~~~~~~~~vr~ 800 (861)
T 2bpt_A 725 MALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALF-PYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHG-GGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHH-HHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence 677777665321 346778888888877543211 11111 23333333 333211 578999
Q ss_pred HHHHHHHHHhc
Q 015939 371 MCGDLVKVLGK 381 (398)
Q Consensus 371 ~A~~lL~~l~~ 381 (398)
.|..++..|..
T Consensus 801 ~a~~~l~~l~~ 811 (861)
T 2bpt_A 801 AAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 133
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=1.3e-05 Score=71.50 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=133.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhc-cccCHHHHHHHHHHHHHhcCCcc-hHHH
Q 015939 182 PLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLK-LAEDQALNDAILSILITLSVYRS-VKAQ 258 (398)
Q Consensus 182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~~Ls~~~~-~~~~ 258 (398)
+.+.+.+++.+...|..|+..|..+... +.... .....+++.|..+|. +. +..++..|+.+|..|+..-. .-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4577888888999999999999988765 33211 122467888889995 66 89999999999999985321 1122
Q ss_pred HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
.+. ..++.|+..+. +.+..+++.|..+|.++..... . ...++.+...+...++.+++.++..|..+....
T Consensus 95 ~~~-~ilp~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 95 YAS-ACVPSLLEKFK--EKKPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHH-HHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 222 37899999995 4678999999999999987432 1 135667888888889999999999999965432
Q ss_pred C-ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 339 K-DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 339 ~-~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+ +......+ ...++.|+..|... ..++|+.|...+..+..
T Consensus 165 ~~~~~~~~~l--~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKLL--KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHHH--HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 2 11112222 24788888888655 78999999998888765
No 134
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.18 E-value=6.4e-06 Score=90.72 Aligned_cols=270 Identities=10% Similarity=0.060 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
..+..++..+.+++.+ .+..|...|.+....+...-..-... ..++.|+..|.+ .+..++..|+.+|..++...
T Consensus 6 ~~l~~lL~~l~s~d~~--~R~~A~~~L~~~l~~~~~~~~~~~~~-~il~~Ll~~L~d---~~~~vR~~A~~~L~~l~~~~ 79 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLED---KNGEVQNLAVKCLGPLVSKV 79 (1230)
T ss_dssp HHHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHhcCCCCHh--HHHHHHHHHHHHHcccccCCChhHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhC
Confidence 3567788888887765 88889888887664421110000111 456777777765 34567799999999888644
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH-------HHhhchhhHHHHHHHHhccccCHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK-------RRVLETENLLSALFDYLKLAEDQA 237 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------~~i~~~~g~i~~Lv~lL~~~~~~~ 237 (398)
.. +.. ..+++.|+..|.+.+..+|..|+.+|..++..-... ... ...+++.|+..+.+..++.
T Consensus 80 ~~--~~~------~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 80 KE--YQV------ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp CH--HHH------HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHH
T ss_pred CH--HHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchH
Confidence 32 111 235788888888888899999999999887652111 111 2568999999998422788
Q ss_pred HHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939 238 LNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV 316 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l 316 (398)
.+..|+.+|..++... +.-.. .-...++.++..|. ++++.++..|+.+|..++..... .+. ...++.++..+
T Consensus 150 ~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L 222 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSEL 222 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHh
Confidence 9999999999987421 10000 11235666777774 36778999999999999874321 223 25688888888
Q ss_pred hcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 317 MKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 317 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
... +...+..++.++..++...+ ..... .-...++.++..++.. ++.+|+.|..++..+.+
T Consensus 223 ~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~--~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 223 SKNDSMSTTRTYIQCIAAISRQAG-HRIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHTCSSCSCTTHHHHHHHHHHHSS-GGGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHHhH-HHHHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 764 34667788888888886543 12111 1145788888888755 78899999888887776
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.12 E-value=6.7e-05 Score=68.97 Aligned_cols=192 Identities=12% Similarity=0.013 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939 81 TVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI 160 (398)
Q Consensus 81 p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l 160 (398)
+.|..++..+++.|.+++.. ....++..|..+-..+......++.. ||+..|+..... .+ ...+..++++|.++
T Consensus 114 tsps~ra~~iiekL~~~~~~--~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~-~~--gN~q~Y~L~AL~~L 187 (339)
T 3dad_A 114 TQLSVRVNAILEKLYSSSGP--ELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAA-AD--HNYQSYILRALGQL 187 (339)
T ss_dssp ECHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTT-SC--HHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHh-cC--hHHHHHHHHHHHHH
Confidence 34567788899999977654 88999999999554556666666777 899999999987 44 44569999999999
Q ss_pred hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch-hHHHhhchhh---------HHHHHHHHh
Q 015939 161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE-SKRRVLETEN---------LLSALFDYL 230 (398)
Q Consensus 161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g---------~i~~Lv~lL 230 (398)
....+. -..++.+...|..+..++.+.+..+.+.|..+|..+....+ +...+..... .+..|+.+|
T Consensus 188 M~~v~G----m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L 263 (339)
T 3dad_A 188 MLFVDG----MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSIL 263 (339)
T ss_dssp TTSHHH----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHH
T ss_pred Hhcccc----ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 876555 23435567789999999998889999999999999877743 4443332111 267899999
Q ss_pred c---cccCHHHHHHHHHHHHHhc---CCcchHHHHH----HcCChHHHHHHhcccCcchhhHH
Q 015939 231 K---LAEDQALNDAILSILITLS---VYRSVKAQLV----ELGMVQILTRILSDSRTQILTVE 283 (398)
Q Consensus 231 ~---~~~~~~~~~~a~~aL~~Ls---~~~~~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~ 283 (398)
+ +. +.+.+..|+..|-.+- .+.+.+..++ +.|.-..+.+.|+....++++++
T Consensus 264 ~~~~~~-D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 264 EEKNGA-DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp TTTTSC-CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred hccCCC-CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 7 44 8889999888777663 2233344444 34544566676754333555554
No 136
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.09 E-value=4.9e-07 Score=72.80 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=84.1
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
....++.++.+|++.++.+|..|+++|..+.. . .++.|+.+|++. ++.++..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNE-DWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence 45678888888888888888888877765432 1 258888888887 88899999999888753
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
.++++.|+.+|. ++++.++..|+.+|..+.. ..+++.|+.++.+.++.++..|+.+|..
T Consensus 72 -----~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLE--DDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235788888885 4688899999999988752 2457778888887888888888877754
No 137
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.08 E-value=6e-05 Score=67.63 Aligned_cols=192 Identities=13% Similarity=0.122 Sum_probs=130.4
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHH-HhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc-hH
Q 015939 90 WIEKIKSENESENSCVDYLVKVAK-FATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG-VK 167 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~-l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~-~~ 167 (398)
+.+.+.+. .|.++.+|+..|.. +..+.+.....-.+....+..|...+.. +.+..++..|+.+|..++.+-. ..
T Consensus 21 f~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhccccc
Confidence 34455544 37799999999999 8755332211012221456666667633 4566778999999999985332 10
Q ss_pred HHhh-HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 168 EKLN-RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 168 ~~~~-~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
.. .+ ...++|.+++.+......++..+..+|..+... +..... ..-...++.|+..|++. ++.++..++.+
T Consensus 97 --f~~~y---~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~al~~ 169 (249)
T 2qk1_A 97 --FSKDY---VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRMECTQL 169 (249)
T ss_dssp --SCHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred --ccHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 01 11 123688999999888889999999999888775 221111 10146889999999998 89999999999
Q ss_pred HHHhcCCcc---hH-HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 246 LITLSVYRS---VK-AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 246 L~~Ls~~~~---~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
|..+..... .. ...+....+|.|.+++ .+++++++..|..+|..++.
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l--~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIV--NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 999874332 11 1223256899999999 45789999999999988874
No 138
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.06 E-value=0.0017 Score=66.01 Aligned_cols=284 Identities=13% Similarity=0.095 Sum_probs=152.9
Q ss_pred cccHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHH
Q 015939 64 VPNLTLHRLIAHWSHQLTVP-EQ----EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGV 138 (398)
Q Consensus 64 ~~n~~l~~~i~~~~~~~p~p-~~----~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~l 138 (398)
.+|..+|++.=.+....... .+ .+..+.+.+.+++.- .+.-|+..|..+... + +.+ ..++.+..+
T Consensus 85 s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~--ir~lALr~L~~i~~~--e----~~~--~l~~~v~~~ 154 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPT--FMGLALHCIANVGSR--E----MAE--AFAGEIPKI 154 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHH--HHHHHHHHHHHHCCH--H----HHH--HHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHH--HHHHHHHHhhccCCH--H----HHH--HHHHHHHHH
Confidence 45677777766665544332 12 234556667766543 566677777776432 2 332 456777888
Q ss_pred hhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc
Q 015939 139 LNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE 218 (398)
Q Consensus 139 L~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 218 (398)
|.+ .+.++-++..|+-++..+...+++ . +...++++.+.++|.+.++.++.+|+.+|..++..+.. .+..
T Consensus 155 l~~-~d~~~~VRK~A~~al~kl~~~~p~------~-~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~~~ 224 (621)
T 2vgl_A 155 LVA-GDTMDSVKQSAALCLLRLYRTSPD------L-VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EFKT 224 (621)
T ss_dssp HHC-SSSCHHHHHHHHHHHHHHHHHCGG------G-CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HHTT
T ss_pred HhC-CCCCHHHHHHHHHHHHHHHHhChh------h-cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HHHH
Confidence 843 345566779999999998875443 1 33358999999999988999999999999999875321 1110
Q ss_pred -hhhHHHHHHHHhccc------------cCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhc---------c
Q 015939 219 -TENLLSALFDYLKLA------------EDQALNDAILSILITLSVYR--SVKAQLVELGMVQILTRILS---------D 274 (398)
Q Consensus 219 -~~g~i~~Lv~lL~~~------------~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~---------~ 274 (398)
.+..+..|-+++..+ .++=.+...++.|..++..+ +.+..+.+ .++.++..+. +
T Consensus 225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccc
Confidence 022333333443221 14567777777777776532 23333322 2222222211 0
Q ss_pred cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH
Q 015939 275 SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT 354 (398)
Q Consensus 275 ~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~ 354 (398)
.+....+.-.|..++..+...++.+.. ++..|..++.+.++..+-.|+..|..++...++. .++ .....
T Consensus 303 ~n~~~aVl~ea~~~i~~l~~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~----~~~-~~~~~ 371 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHDSEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH----EAV-KTHIE 371 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH----HHH-HTTHH
T ss_pred cchHHHHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH----HHH-HHHHH
Confidence 011225555555555555543332222 2334555555555566666666666655432110 111 12344
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 355 KLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
.++..|..+.+..+|.+|..+|..+.
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 44444542224555555555554443
No 139
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.04 E-value=0.0016 Score=66.27 Aligned_cols=253 Identities=11% Similarity=0.144 Sum_probs=160.9
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHH
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK 169 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~ 169 (398)
+.+.+.+.+.+.-.+..|+-++..+...+++. +... +.++.|..+|.+ . +..++..|+.+|..++..++.
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~-~~~~~l~~lL~d-~--d~~V~~~a~~~l~~i~~~~~~--- 220 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMG-DWTSRVVHLLND-Q--HLGVVTAATSLITTLAQKNPE--- 220 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCC-SCHHHHHHHTTC-S--CHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCch-hHHHHHHHHhCC-C--CccHHHHHHHHHHHHHHhChH---
Confidence 44445333333347788999999988765542 2223 889999999976 3 456779999999998865432
Q ss_pred hhHhhhccCCChHHHHHHHh----cC-------------ChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHh
Q 015939 170 LNRLILNTYNCLPLFLEILR----EG-------------NLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYL 230 (398)
Q Consensus 170 ~~~~il~~~g~i~~Lv~lL~----~~-------------~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL 230 (398)
. + ...++.+++.|. .+ ++-.+.....+|..+...+ +.+..+ ...++.++..+
T Consensus 221 ---~-~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l---~~~L~~il~~~ 291 (621)
T 2vgl_A 221 ---E-F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL---TECLETILNKA 291 (621)
T ss_dssp ---H-H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH---HHHHHHHHHHH
T ss_pred ---H-H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHhh
Confidence 1 1 134555554443 32 3556776777777666532 333222 22344444332
Q ss_pred ---------ccc-cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHH
Q 015939 231 ---------KLA-EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRL 300 (398)
Q Consensus 231 ---------~~~-~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~ 300 (398)
++. ....+.-.+++++..+....+... .++..|..+|. +.++.++-.++..|..++.......
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~~~ 364 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQ--HRETNLRYLALESMCTLASSEFSHE 364 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCcHH
Confidence 111 023678888899998874433222 25677889884 4688999999999999987432122
Q ss_pred HHhhccCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939 301 ALSEEASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL 379 (398)
Q Consensus 301 ~i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l 379 (398)
.+. .....++..+. +.+..++..|+.+|..++. +++... ++..|...+... +...|..+...+..+
T Consensus 365 ~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 365 AVK---THIETVINALKTERDVSVRQRAVDLLYAMCD----RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAIL 431 (621)
T ss_dssp HHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 222 45777888888 8899999999999999986 345444 344577777654 677777776655555
Q ss_pred hc
Q 015939 380 GK 381 (398)
Q Consensus 380 ~~ 381 (398)
+.
T Consensus 432 a~ 433 (621)
T 2vgl_A 432 AE 433 (621)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 140
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.04 E-value=0.00015 Score=64.53 Aligned_cols=183 Identities=9% Similarity=0.086 Sum_probs=130.5
Q ss_pred HHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcCc--
Q 015939 134 AVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLDN-- 210 (398)
Q Consensus 134 ~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~-- 210 (398)
.+...+.+ .+-+.+..|+..|..+....+.. ... .-..+++.|...|. ..+..++..|+.+|..|+..-
T Consensus 19 ~l~~~l~s---~~w~~R~~a~~~L~~l~~~~~~~---~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 19 DFYDKLEE---KKWTLRKESLEVLEKLLTDHPKL---ENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp THHHHHTC---SSHHHHHHHHHHHHHHHHHCSSB---CCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhcc---CCHHHHHHHHHHHHHHHccCCCC---CCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 35566655 33455688888888877542110 000 01245777888884 789999999999999999652
Q ss_pred hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939 211 ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLS 290 (398)
Q Consensus 211 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~ 290 (398)
..... ...+++.|+..+++. ++.++.++..+|.++....... ..++.+...|+ +.++.++..++..|.
T Consensus 91 ~~~~~---~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 91 RFSNY---ASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSETALFIA 158 (242)
T ss_dssp GGHHH---HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred hHHHH---HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHHHHHHH
Confidence 22222 145899999999998 8889999999999997654321 25677888885 368899999999999
Q ss_pred HHhC-C-HHH-HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 291 IVAT-C-SEG-RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 291 ~La~-~-~~~-~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
.+.. . ++. -.... ...++.|+..+.+.+..++..|..+|..++..-
T Consensus 159 ~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 9654 2 331 11222 257889999999999999999999999988643
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.00 E-value=0.00022 Score=65.55 Aligned_cols=185 Identities=16% Similarity=0.076 Sum_probs=132.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHH-hhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-
Q 015939 183 LFLEILREGNLDSKIGSIKILDS-ISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV- 260 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v- 260 (398)
.+++-|.+++.+.+..+..-|.. +..+.+....+.. .+|+..|+++.... +.+.+..+++||.+|-.+.+...-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~-~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH-SEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH-TTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH-hccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhC
Confidence 34455666766777778888886 6677788887777 78899999999988 89999999999999998887776776
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhh------cc-C--cHHHHHHHHh---ccChhHHHHH
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSE------EA-S--CAGRVVERVM---KVGKTAREDA 327 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~------~~-g--~v~~Lv~~l~---~~~~~~~~~a 327 (398)
....|..+..++. +.+..+++.|+++|..++...+ +..-+.. .+ | -...|+.+|. .++...+.+|
T Consensus 200 ~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 200 HSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp CHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 4557888888885 4788999999999999987433 3332221 11 1 2779999997 5788999999
Q ss_pred HHHHHHhhccCCChhHHHH----HHhcCCHHHHHHHHhhcC-cHHHHHH
Q 015939 328 VVVIWSMCCVYKDARVKEA----VVNSNGLTKLLLVMQSEN-EGIVRKM 371 (398)
Q Consensus 328 ~~~L~~l~~~~~~~~~~~~----~~~~g~~~~Ll~~l~~~~-~~~~k~~ 371 (398)
...+-.+-...++++.+.. .-+.|.=..+...|...+ ++..++.
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9888666655444442333 334554445555576543 4455544
No 142
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.86 E-value=5.5e-05 Score=83.30 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN 164 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~ 164 (398)
..++.+++.+.+.+ ++.+..|+..|..++..-+. ..+. .+++.|+..|.+ .+ ..++..|..+|..++..-
T Consensus 48 ~il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~--~~~~---~i~~~Ll~~l~d-~~--~~vR~~a~~~L~~i~~~l 117 (1230)
T 1u6g_C 48 KVVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKE--YQVE---TIVDTLCTNMLS-DK--EQLRDISSIGLKTVIGEL 117 (1230)
T ss_dssp HHHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCH--HHHH---HHHHHHHHHTTC-SS--SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCH--HHHH---HHHHHHHHHhcC-Cc--HHHHHHHHHHHHHHHHhC
Confidence 34566777776443 45888899999988864322 1121 456677777765 33 345688888888777543
Q ss_pred chHH---HhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcC-ch-hHHHhhchhhHHHHHHHHhccccCHHH
Q 015939 165 GVKE---KLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLD-NE-SKRRVLETENLLSALFDYLKLAEDQAL 238 (398)
Q Consensus 165 ~~~~---~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 238 (398)
.... .... -.....+|.|+..+. +.+...+..|+.+|..++.. +. .... ....++.|+..|.+. ++.+
T Consensus 118 ~~~~~~~~~~~--~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~---~~~ll~~l~~~L~~~-~~~v 191 (1230)
T 1u6g_C 118 PPASSGSALAA--NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF---HPSILTCLLPQLTSP-RLAV 191 (1230)
T ss_dssp C-----CCTHH--HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT---HHHHHHHHGGGGGCS-SHHH
T ss_pred CCcccccchHH--HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHcCC-cHHH
Confidence 3210 0000 012356899999998 47889999999999988753 11 1111 146788888888887 7889
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHh
Q 015939 239 NDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVM 317 (398)
Q Consensus 239 ~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~ 317 (398)
+..|+.+|..++...... +. ...++.++..|.+ ..+..++..++.++..++.. +..-.... ...++.++..+.
T Consensus 192 R~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSK-NDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHHHHTTTC------C-TTHHHHHHHHHHH-TCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhc
Confidence 999999999998654322 22 2358888888864 22345666777777777652 11111111 367888899888
Q ss_pred ccChhHHHHHHHHHHHhhccCC
Q 015939 318 KVGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 318 ~~~~~~~~~a~~~L~~l~~~~~ 339 (398)
+.++.+++.++.++..++...+
T Consensus 266 d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 266 VDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp SCCTTTHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCh
Confidence 8889999999999988876543
No 143
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00017 Score=64.64 Aligned_cols=192 Identities=10% Similarity=0.055 Sum_probs=131.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHH-hhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc---chHHH
Q 015939 184 FLEILREGNLDSKIGSIKILDS-ISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR---SVKAQ 258 (398)
Q Consensus 184 Lv~lL~~~~~~~~~~a~~~L~~-L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~~~ 258 (398)
+.+.+.+.++.-|..|+..|.. +... ++...........+..|...|..+.+..++..|+.+|..|+.+- .....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788899999999999998 8743 22111012224678888999943338889999999999998422 22102
Q ss_pred HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHH-hhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLAL-SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i-~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
.... .++.+++.+. +..+.+++.+..+|..++..- .....- . ...++.|...|.+.++.+++.++.+|..+..
T Consensus 101 y~~~-llp~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YVSL-VFTPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH-HHHHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2222 6889999995 356788888888888887621 100000 1 1356678888888899999999999999987
Q ss_pred cCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 337 VYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 337 ~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..+.. ......+.-..++.|...|... ++.+|+.|...|..+.+
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 65321 2212222246888888888655 89999999998887665
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.71 E-value=0.0024 Score=61.58 Aligned_cols=225 Identities=13% Similarity=0.141 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhcCC-cHHHHHHHhhhc--------------cCCcHHHHHHHHHHHHhhhcccchH
Q 015939 103 SCVDYLVKVAKFATGCEANRRFLASYGG-FVEAVFGVLNRK--------------RRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g-~v~~L~~lL~~~--------------~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
.+--++..|..+... +.+|..+.+.+| .++.++.++... +....+++-+++-++..|+.+.+..
T Consensus 184 ~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~ 262 (480)
T 1ho8_A 184 TCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFA 262 (480)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHH
Confidence 344578888888866 778888766523 477777665532 1224677889999999999876642
Q ss_pred HHhhHhhhccCCCh--HHHHHHHhcC-ChhhHHHHHHHHHHhhcCc--h---h-HHHhhchhhHHHHHHHHhccc--cCH
Q 015939 168 EKLNRLILNTYNCL--PLFLEILREG-NLDSKIGSIKILDSISLDN--E---S-KRRVLETENLLSALFDYLKLA--EDQ 236 (398)
Q Consensus 168 ~~~~~~il~~~g~i--~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~--~---~-~~~i~~~~g~i~~Lv~lL~~~--~~~ 236 (398)
.. +.+.+.. +.|+++++.. -..+..-+..+|.||.... + . +..+.. .++ .+++..|+.. .|+
T Consensus 263 ----~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L~~rk~~De 335 (480)
T 1ho8_A 263 ----NE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSLSERKYSDE 335 (480)
T ss_dssp ----HH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHHHSSCCSSH
T ss_pred ----HH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHHhhCCCCcH
Confidence 33 4444533 6778888866 4666667888999998764 1 1 122322 344 4566666643 566
Q ss_pred HHHHHHHHH-------HHHhcCCcchHHHHHH--------------------------cCChHHHHHHhccc--------
Q 015939 237 ALNDAILSI-------LITLSVYRSVKAQLVE--------------------------LGMVQILTRILSDS-------- 275 (398)
Q Consensus 237 ~~~~~a~~a-------L~~Ls~~~~~~~~~v~--------------------------~g~v~~Lv~lL~~~-------- 275 (398)
+..+..-.. +..+++.++.+..+-. ...+..|+++|.+.
T Consensus 336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~ 415 (480)
T 1ho8_A 336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA 415 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence 554432222 2222333333333211 12578899999631
Q ss_pred CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 276 RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 276 ~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
+.|+.+..-|+.=+..++. .|++|.-+. .-|+=..+.++|...+++++.+|+.++..+..
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLD-KTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3477888889988999888 888888665 56999999999999999999999999987654
No 145
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.65 E-value=7.5e-05 Score=59.74 Aligned_cols=119 Identities=9% Similarity=0.032 Sum_probs=83.1
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
..++.|+.+|++ .+.. ++..|+.+|..+. +. .++.|+..|++.++.+|..|+++|..+..
T Consensus 12 ~~~~~l~~~L~~-~~~~--vR~~A~~~L~~~~---------------~~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 12 SGLVPRGSHMAD-ENKW--VRRDVSTALSRMG---------------DE-AFEPLLESLSNEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ---------CCS-SCCC--SSSSCCSSTTSCS---------------ST-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred ccHHHHHHHhcC-CCHH--HHHHHHHHHHHhC---------------ch-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence 567777777776 4433 2355555544321 11 36899999999999999999999987652
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L 289 (398)
...++.|+.+|+++ ++.++..|+++|.++.. ..+++.|+.++. ++++.++..|..+|
T Consensus 72 ----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKVAVNYL 128 (131)
T ss_dssp ----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHHHHHHG
T ss_pred ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 45789999999888 89999999999998852 246889999995 47888999988887
Q ss_pred HH
Q 015939 290 SI 291 (398)
Q Consensus 290 ~~ 291 (398)
..
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 64
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.58 E-value=0.0018 Score=68.57 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhhhhh---hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939 105 VDYLVKVAKFATGCEA---NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181 (398)
Q Consensus 105 ~~al~~L~~l~~~~~~---~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i 181 (398)
..|+..+..++..... .--++. +.++.++..+.+ .. ..+++.|-.++..+...-+. .. -..++
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~d-k~--~~v~~aa~~~~~~~~~~~~~-----~a---~~~~~ 135 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV---QLVPAICTNAGN-KD--KEIQSVASETLISIVNAVNP-----VA---IKALL 135 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH---TTHHHHHHHTTC-SS--HHHHHHHHHHHHHHHHHSCG-----GG---HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH---HHHHHHHHHhcC-Cc--hHHHHHHHHHHHHHHHhCCH-----HH---HHHHH
Confidence 5677777777754321 111222 445666665554 32 34556666565555433221 11 14569
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 182 PLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
|.|+..|+++ .+..+..|..+|..|+... ..++.. -...||.+...+.+. .+++..+|..++-.+|..-+|+..
T Consensus 136 ~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~- 211 (986)
T 2iw3_A 136 PHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI- 211 (986)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT-
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch-
Confidence 9999999876 6899999999999998753 333332 256788888888777 788999999999999864444321
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK 339 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~ 339 (398)
..-||.|++.+.+ |+-+..+...|....-..+.-.... +=.+|.|..-|...+...++.++-++-|||+--.
T Consensus 212 --~~~~~~~~~~~~~----p~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 212 --ERFIPSLIQCIAD----PTEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp --GGGHHHHHHHHHC----TTHHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred --hhhHHHHHHHhcC----hhhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 2368999999953 3446666655555433222222222 1246666666766788899999999999998766
Q ss_pred ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 340 DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 340 ~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
|+......+ -..+|.+-.....-.+|++|+.|..++..|.+
T Consensus 284 ~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 284 DPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 555444433 33566666666666789999999999999977
No 147
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.44 E-value=0.094 Score=50.62 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh---hhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCE---ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE 163 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~---~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~ 163 (398)
+..++..|+.... .+.....+.-+..+...++ ..-..+.+.+.....+...... . .+.-.+..+..++..+...
T Consensus 79 ~~~~l~lL~~~~~-~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~-~-dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 79 LIPLIHLLSTSDN-EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK-G-DFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp HHHHHHHHHSCCC-HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC-S-SHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhhcCh-HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhc-c-cchHHHHHHHHHHHHHhcc
Confidence 3456666665443 2345556666667776655 3333444443433333332222 2 2223334555554444322
Q ss_pred cchHHHhhHhhhccCCChH--HHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhh-HHHHHHHHhccc------
Q 015939 164 NGVKEKLNRLILNTYNCLP--LFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETEN-LLSALFDYLKLA------ 233 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~--~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-~i~~Lv~lL~~~------ 233 (398)
....++.... .+. -++..|.+. +...+.-++.+|..|...+++|..+....| .+++++.+++..
T Consensus 156 ~~~~~~~l~~------l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GLHNVKLVEK------LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TTCCHHHHHH------HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CCccHhHHHH------HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 1110001111 112 344555552 445566799999999999999999986334 577777655421
Q ss_pred ----------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh--HHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939 234 ----------EDQALNDAILSILITLSVYRSVKAQLVELGMV--QILTRILSDSRTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 234 ----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v--~~Lv~lL~~~~~~~~~~~~al~~L~~La~~ 295 (398)
.+.+.+-.++-++|-|+..++....+...+.. +.|+++++. +..+++.+-++.+|+||...
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSS
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcc
Confidence 13566788999999999999888888877754 677788873 56789999999999998874
No 148
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.44 E-value=9.3e-05 Score=54.85 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=37.6
Q ss_pred cccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 15 RCPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 15 ~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.||+|.-.+..= .++||+|.||..|+..|..++..+||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 478887776653 467999999999999999888899999998754
No 149
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.00017 Score=51.30 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=38.1
Q ss_pred ccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939 14 FRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPATMQILSTK 61 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~ 61 (398)
-.|+||++++..=+.- .|||.|=..||.+||.. +..+||.|+..+...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4799999999743332 69999999999999975 247899999887643
No 150
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.39 E-value=0.00018 Score=49.01 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=39.8
Q ss_pred CcccccCccccCCCceecCCCc-----ccchhHHHHHHh-cCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGV-----TYDRSSIQHWLE-SGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~-~~~~~CP~~~~~l~ 59 (398)
+.-.|.||.+-..+|.++||.+ .|=+.|+.+|+. .++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3457999999889999999653 688999999996 46789999998765
No 151
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.31 E-value=0.004 Score=65.87 Aligned_cols=263 Identities=13% Similarity=0.105 Sum_probs=170.6
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939 88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167 (398)
Q Consensus 88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~ 167 (398)
..+++.+..++.+ ++..+...+..+...+... ..... ++++.|...+....+ . +.|+.++..++......
T Consensus 17 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~k~~---~--~~a~~~~~~~~~~~~~~ 86 (986)
T 2iw3_A 17 EELFQKLSVATAD--NRHEIASEVASFLNGNIIE--HDVPE-HFFGELAKGIKDKKT---A--ANAMQAVAHIANQSNLS 86 (986)
T ss_dssp HHHHHHHTTCCTT--THHHHHHHHHHHHTSSCSS--SSCCH-HHHHHHHHHHTSHHH---H--HHHHHHHHHHTCTTTCC
T ss_pred HHHHhhccccchh--HHHHHHHHHHHHHhccccc--cccch-hHHHHHHHHHhccCC---H--HHHHHHHHHHHHhcCCC
Confidence 3355555544433 6777888888876543222 22224 677777777766111 1 88888888888544321
Q ss_pred HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939 168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL 246 (398)
Q Consensus 168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL 246 (398)
...-.. +. +.++.+++........+|..|..++..|... +.+.. ..++|.|+..|++......+..|+.+|
T Consensus 87 ~~~e~~-~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~ 158 (986)
T 2iw3_A 87 PSVEPY-IV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAF 158 (986)
T ss_dssp TTTHHH-HH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcccc-hH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHH
Confidence 111122 22 5678888877777788998888888877655 22221 357899999997764578999999999
Q ss_pred HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
..|+......-...=...||.+.+.+ .+..+++...|..++..+|..-.|+. -+..||.||+.+.+.+. ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~--~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p~~--~~~ 230 (986)
T 2iw3_A 159 SAMVDAAKDQVALRMPELIPVLSETM--WDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADPTE--VPE 230 (986)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCTTH--HHH
T ss_pred HHHHHHhHHHHHHhccchhcchHhhc--ccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcChhh--hHH
Confidence 99986432222222245788888888 56889999999999999987433332 13579999999986533 455
Q ss_pred HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|..-+.-.. +..-.+ +=.+|.|.+-|... +..+|++++-+..+|.+
T Consensus 231 ~~~~l~~~tfv~~---v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 231 TVHLLGATTFVAE---VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp HHHHHTTCCCCSC---CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcCeeEee---ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhh
Confidence 5666655444321 111111 11466677777655 67889999999999988
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.27 E-value=0.021 Score=47.71 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=90.3
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS 254 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~ 254 (398)
+..++..++.+|+.+-+.++.+|..++..++.. ++.-+ -.+..|+.+++......+....++++..++. .++
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e------pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE------PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 456788888888888888888998888888876 33322 2345566666554355566666666666653 222
Q ss_pred hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
.... .||.+..-.+ -+++.++-+-..+|..++. +|+--..+. .-+..++.+.+...+-.|+..+..
T Consensus 104 ~v~~-----vVp~lfanyr--igd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 104 LVKS-----MIPVLFANYR--IGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHHH-----HHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred HHHh-----hHHHHHHHHh--cCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHH
Confidence 2221 3344444432 2355555555555555544 333322222 223344444444444444444444
Q ss_pred hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
+.-++ .+.. ...+|+|..+|..+ ++.+|-.|...|-.++
T Consensus 171 lGen~----~~yv---~PfLprL~aLL~D~-deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 171 MGENS----FKYV---NPFLPRIINLLHDG-DEIVRASAVEALVHLA 209 (253)
T ss_dssp CCTTT----HHHH---GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHH
T ss_pred HhccC----cccc---CcchHHHHHHHcCc-chhhhHHHHHHHHHHH
Confidence 43211 1111 23444444444433 4444444444444443
No 153
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.084 Score=44.13 Aligned_cols=199 Identities=12% Similarity=0.155 Sum_probs=137.0
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939 101 ENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC 180 (398)
Q Consensus 101 ~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~ 180 (398)
|-.+..|+..|..+++..++...- .+..|+.+++. + .....-....+++..++.-.++ . + .++
T Consensus 46 wtV~kNAl~vi~~i~~~~~el~ep------l~~kL~vm~~k-s-EaIpltqeIa~a~G~la~i~Pe------~-v--~~v 108 (253)
T 2db0_A 46 WTVVKNAISIIMVIAKTREDLYEP------MLKKLFSLLKK-S-EAIPLTQEIAKAFGQMAKEKPE------L-V--KSM 108 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHH------HHHHHHHHHHH-C-CSHHHHHHHHHHHHHHHHHCHH------H-H--HHH
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHH------HHHHHHHHHhh-c-ccCchHHHHHHHHhHHHHhCHH------H-H--Hhh
Confidence 567888988888888765543322 34556777766 2 2334445666777777654332 1 1 245
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
+|.+..=..-|++.++.+...+|..++.. ++.. .+++..+..+|.++ +..-+-.|+..+..+..+. ..-
T Consensus 109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~------~~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~---~~y 178 (253)
T 2db0_A 109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLM------ASIVRDFMSMLSSK-NREDKLTALNFIEAMGENS---FKY 178 (253)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH------HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTT---HHH
T ss_pred HHHHHHHHhcCCccceecHHHHHHHHHHhChHHH------HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccC---ccc
Confidence 77777777888999999999999999876 3322 45677888999988 7667777777777765443 222
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
+.- -+|.|+.+| .+.+.-++..|..+|.+++. ++.-|..+. ..++-+.+.|..++......|..+..
T Consensus 179 v~P-fLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~-------~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 179 VNP-FLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVI-------KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HGG-GHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCc-chHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 222 578899999 45778888899999999998 556554443 24455667888888877777777664
No 154
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.98 E-value=0.00038 Score=52.96 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=29.1
Q ss_pred CcccccCccc-cCCCcee--cCCCcccchhHHHHHH
Q 015939 12 NLFRCPISLD-VMKSPVS--LCTGVTYDRSSIQHWL 44 (398)
Q Consensus 12 ~~~~Cpi~~~-~~~dPv~--~~~g~~~~r~~i~~~~ 44 (398)
+++.|++|.+ ++.+||. +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4678999996 5899999 9999999999999943
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.97 E-value=0.26 Score=51.74 Aligned_cols=175 Identities=9% Similarity=0.021 Sum_probs=116.6
Q ss_pred CCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939 178 YNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
...++.+++.|... ++.+|..++.++..-.....+ ..+|+.|+..+.+..+..+++.|+.+|.-+...++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--
Confidence 34577888888754 777777666666533322222 34567777777665577899999999998876553
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
..++.++++|. .+.++.++..+..+|..++..... .. ++..|..++.+.+..++..|+.+|..+..
T Consensus 611 ------e~v~rlv~~L~-~~~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 ------TTVPRIVQLLS-KSHNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp ------SSHHHHTTTGG-GCSCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred ------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 35778888776 356899999999999999763322 22 34456677778999999999999999887
Q ss_pred cCCCh---hHHHHHHhcCCHHHHHHHHhh-cCcHHHHHHHHHHHHHHhc
Q 015939 337 VYKDA---RVKEAVVNSNGLTKLLLVMQS-ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 337 ~~~~~---~~~~~~~~~g~~~~Ll~~l~~-~~~~~~k~~A~~lL~~l~~ 381 (398)
...+. ++. +.+..|...... +.++.++-.|.-....+..
T Consensus 677 gtnna~~~rva------~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 677 QQTEKLNPQVA------DINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp TCCTTTCTTHH------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred CCccccchHHH------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 64322 221 233445555543 3356677777666666544
No 156
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.74 E-value=0.02 Score=56.06 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=154.4
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh--hhhhhhhcCCcHHHHHHHh--hhcc----C-CcHHHHHHHHHHHHh
Q 015939 89 VWIEKIKSENESENSCVDYLVKVAKFATGCEA--NRRFLASYGGFVEAVFGVL--NRKR----R-SEIAVLESAVRVLNL 159 (398)
Q Consensus 89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~--~r~~i~~~~g~v~~L~~lL--~~~~----~-~~~~~~~~al~~L~~ 159 (398)
.|+..|-++ .||.|--|+..|+.+.+.... .|..-... +..-.|+.+| ++.+ | .-..++|.|..+|..
T Consensus 178 ~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 178 QISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 344444443 388998899999988766431 12211111 2333334333 2221 1 123567888888888
Q ss_pred hhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939 160 IVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALN 239 (398)
Q Consensus 160 l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 239 (398)
+ ..-+. +..++..++..+.....+++..+...|..+ ++.+..-.++++.++.-|++. +.+++
T Consensus 255 L-~hLp~----------e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DDDVR 316 (800)
T 3oc3_A 255 I-YPLIG----------PNDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DEDIK 316 (800)
T ss_dssp H-TTTSC----------SCCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SHHHH
T ss_pred H-HhCCh----------hHHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-ccHHH
Confidence 7 44332 124455555556777999999999999999 222222368899999999998 88999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc
Q 015939 240 DAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV 319 (398)
Q Consensus 240 ~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~ 319 (398)
..|+.+|.-++ .++... ..+..+.+.|.+.++=.......+..|..|+..+. ....++..||.|.-++...
T Consensus 317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTCS
T ss_pred HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcCC
Confidence 99999999998 222222 24556667775432223445566777777777553 2222457888898989989
Q ss_pred ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939 320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK 377 (398)
Q Consensus 320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~ 377 (398)
-..++..++.+|..+.. ...... +.+-+-...++.+++.+..+.+
T Consensus 388 ITSVR~AVL~TL~tfL~----~~~LRL---------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLSE----ESIDFL---------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SHHHHHHHHHHTTTCCC----HHHHHH---------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh----hhHHHH---------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999999977661 233222 2222223446788888877765
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.72 E-value=0.17 Score=53.19 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=105.0
Q ss_pred hHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 181 LPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 181 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
+..|+..+.++ +..++..++..|..+.... ...++.+++.|....++-++..++.++.--..+..|..
T Consensus 509 i~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-- 577 (963)
T 4ady_A 509 IHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-- 577 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH--
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH--
Confidence 45555555433 5666776777776665432 34456777777765467677766666654433333322
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccC
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~ 338 (398)
+|..|+..+. .+.+..+++.|...|..+...+. ..++.++.++. ..++.++..|+.+|..++..+
T Consensus 578 ----aIq~LL~~~~-~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 578 ----AVKRLLHVAV-SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp ----HHHHHHHHHH-HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred ----HHHHHHHHhc-cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 4566777765 24567788888888888765331 24566666554 588999999999999988754
Q ss_pred CChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 339 KDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 339 ~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++.+ ++..|..++ .+.+..+|+.|...|..+..
T Consensus 644 ~~~~---------aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 644 GLQS---------AIDVLDPLT-KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp CCHH---------HHHHHHHHH-TCSSHHHHHHHHHHHHHHST
T ss_pred CcHH---------HHHHHHHHc-cCCCHHHHHHHHHHHHHHhc
Confidence 4222 233333333 45578888888888887765
No 158
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.70 E-value=0.01 Score=55.65 Aligned_cols=235 Identities=10% Similarity=0.063 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHHhhC-CCCH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHh
Q 015939 64 VPNLTLHRLIAHWSHQL-TVPE---QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVL 139 (398)
Q Consensus 64 ~~n~~l~~~i~~~~~~~-p~p~---~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL 139 (398)
.+|..+|+++=.+.... +.|. -.+..+.+.+.+++.- .+-.|+..+..+... + +.+ ...+.+-+.|
T Consensus 79 s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~--~----m~~--~l~~~lk~~L 148 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDS--T----MLQ--AIERYMKQAI 148 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCT--T----THH--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCH--H----HHH--HHHHHHHHHc
Confidence 56778888876554322 1221 1245566777776543 455566666665432 1 111 2233344444
Q ss_pred hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh-HHHhh-
Q 015939 140 NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES-KRRVL- 217 (398)
Q Consensus 140 ~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~- 217 (398)
.+ .++-++..|+-+...+....++ ++ .+++..+-+++.+.++-++.+|..+|..+...+.. -..+.
T Consensus 149 ~d---~~pyVRk~A~l~~~kL~~~~pe--------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~ 216 (355)
T 3tjz_B 149 VD---KVPSVSSSALVSSLHLLKCSFD--------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMIS 216 (355)
T ss_dssp TC---SSHHHHHHHHHHHHHHTTTCHH--------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHhccCHH--------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 44 4455668888888888766554 11 26899999999888999999999999988875421 00000
Q ss_pred ---c---------------------------hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939 218 ---E---------------------------TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI 267 (398)
Q Consensus 218 ---~---------------------------~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~ 267 (398)
. ....++.|..+|++. ++.+.-.|++++..+...+.. . -.-++..
T Consensus 217 ~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~---~-~~~a~~~ 291 (355)
T 3tjz_B 217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK---E-LAPAVSV 291 (355)
T ss_dssp HHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS-SHHHHHHHHHHHTC---------------CCCT
T ss_pred HHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH---H-HHHHHHH
Confidence 0 011222233333333 455666666666666442211 1 1234555
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
|..+|+ ++++.++-.|+..|..+.. +|+..+ .+-..+..++.+++......|+..|..
T Consensus 292 L~~fLs--s~d~niryvaLr~L~~l~~~~P~~v~------~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 292 LQLFCS--SPKAALRYAAVRTLNKVAMKHPSAVT------ACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp HHHHHH--SSSSSSHHHHHHCC---------------------------------------------
T ss_pred HHHHHc--CCCchHHHHHHHHHHHHHHHCcHHHH------HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 666663 3567777777777766665 222111 123345556666666666666666543
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.67 E-value=0.034 Score=48.94 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939 105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP 182 (398)
Q Consensus 105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~ 182 (398)
..|+.-++.+++ +++.|..+.++ +..-.|-.+|...+ .+-.-++-.+++++..+...++. +.... +...+++|
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~--eVi~f-LL~tEiip 148 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQ--EVINF-LLTTEIIP 148 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCH--HHHHH-HHHTTHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcH--HHHHH-HHhhhHHH
Confidence 556767777775 58899999998 88888888887632 11234456788888888876543 22233 45788999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh-------HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN-------LLSALFDYLKLAEDQALNDAILSILITLSVYRSV 255 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 255 (398)
..++.+..|+.-.|.-|..++..+..++..-..+..+.. ++..+|.-|....++.+.++..++-..|+.+...
T Consensus 149 lCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 149 LCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999888866666654333 3333333333334889999999999999999887
Q ss_pred HHHHH
Q 015939 256 KAQLV 260 (398)
Q Consensus 256 ~~~~v 260 (398)
+..+-
T Consensus 229 r~aL~ 233 (268)
T 2fv2_A 229 REALR 233 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.63 E-value=0.00034 Score=64.08 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=37.1
Q ss_pred cccccCccccCCC----cee----cCCCcccchhHHHHHHhc--C-C-------CCCCcccccCC
Q 015939 13 LFRCPISLDVMKS----PVS----LCTGVTYDRSSIQHWLES--G-H-------DTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~d----Pv~----~~~g~~~~r~~i~~~~~~--~-~-------~~CP~~~~~l~ 59 (398)
..-|+||..++.+ |-. .+|||.|-..||.+|+.. + + ..||.|++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3469999999998 533 369999999999999963 1 1 35999998765
No 161
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.31 E-value=0.052 Score=49.73 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=113.7
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchh---hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETE---NLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA 257 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~---g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 257 (398)
+..+.+++ +=+.+.+.-+..+++.+..++.....+.... .++..+...+.+...+..+--+++++.|+-.+...+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 34444444 2244555566667776666665555444311 2333444555444456678899999999988888887
Q ss_pred HHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHh
Q 015939 258 QLVELGMVQILTRILSD--SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSM 334 (398)
Q Consensus 258 ~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l 334 (398)
.+... ...+++.+.+ .+.+..++..+..++.|++.........-+....+..+..++.. .+.++.-.++.+|.++
T Consensus 184 ~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 184 LMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 77642 2444444421 23466788888889999887321100000001133344444543 5778888888899998
Q ss_pred hccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 335 CCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
... +.+.+..+...|+-..+-...+....+++.++|..+|..
T Consensus 262 ~~~--~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 262 ISD--DSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HTT--CHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HhC--ChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 864 345555554556555555555554578899999888764
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0033 Score=58.44 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=52.1
Q ss_pred cccccCccccCCCceecC-CCcc--cchhHHHHHHhc-CCCCCCcccccCCCCCCcccHHHHHHHHH
Q 015939 13 LFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWLES-GHDTCPATMQILSTKEFVPNLTLHRLIAH 75 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 75 (398)
.+.|||+...|..|+--. |.|. |+...+-....+ +.-.||+|++.+...++..+.-+.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 468999999999999976 9998 888888777643 44579999999999999998877766554
No 163
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.17 E-value=0.19 Score=44.16 Aligned_cols=174 Identities=14% Similarity=0.177 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHH
Q 015939 196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYR--SVKAQLVELGMVQILT 269 (398)
Q Consensus 196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv 269 (398)
..+|...|..++.+++.|..+.+ ....-.|..+|... .-+-++-.+++++..|...+ +....+.+.+.||..+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 35777888899999999999887 67766677777654 12346789999999998644 3455556889999999
Q ss_pred HHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH--------hccChhHHHHHHHHHHHhhccCCCh
Q 015939 270 RILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV--------MKVGKTAREDAVVVIWSMCCVYKDA 341 (398)
Q Consensus 270 ~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l--------~~~~~~~~~~a~~~L~~l~~~~~~~ 341 (398)
+.+. .+++-.+..|.-++..+-.++.|...+...+.-+-.+...| +..++..-++.+++-..|+.+ +
T Consensus 152 rime--~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn---~ 226 (268)
T 2fv2_A 152 RIME--SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN---P 226 (268)
T ss_dssp HHHH--HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS---H
T ss_pred HHHh--hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC---H
Confidence 9995 36777888899999999999999888865443222222222 237888899999999999964 5
Q ss_pred hHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939 342 RVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 342 ~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~ 380 (398)
+.++.+.+ .|.+..++ + + ++.+|+.=..++.++.
T Consensus 227 rar~aL~~~LP~~Lrd~tf~~~l---~-~-D~~~k~~l~qLl~n~~ 267 (268)
T 2fv2_A 227 RAREALRQCLPDQLKDTTFAQVL---K-D-DTTTKRWLAQLVKNLQ 267 (268)
T ss_dssp HHHHHHHHHSCGGGTSSTTHHHH---T-S-CHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCcHHhhChHHHHHH---h-c-CHHHHHHHHHHHHhcC
Confidence 55554443 45555444 2 3 6788887777776653
No 164
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.90 E-value=0.93 Score=42.28 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=76.2
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL 259 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 259 (398)
++..+.+=+++.++-+|..|.++|+++...+ +. ....+.+-+.|.+. ++-+++.|+-+.+.|...... +
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~--~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~ 173 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST-----ML--QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---V 173 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----TH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---H
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HH--HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---H
Confidence 5677777788888888988888888887653 21 24566677778887 888899888888888754432 2
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC 295 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~ 295 (398)
++ +.+..+-+++. +.++.++-.|+.+|..+...
T Consensus 174 v~-~~~~~l~~ll~--d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 174 VK-RWVNEAQEAAS--SDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-TTHHHHHHHTT--CSSHHHHHHHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHhc--CCCccHHHHHHHHHHHHHhh
Confidence 33 57888888884 46788888888888888874
No 165
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.66 E-value=0.0086 Score=55.51 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=52.3
Q ss_pred CcccccCccccCCCceecC-CCcc--cchhHHHHHHhc-CCCCCCcccccCCCCCCcccHHHHHHHHH
Q 015939 12 NLFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWLES-GHDTCPATMQILSTKEFVPNLTLHRLIAH 75 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 75 (398)
-.+.||++...|+.|+--. |.|. |+...+-....+ +.-.||+|++.+...++..+.-+.+.+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 3568999999999999975 9998 998888887653 44579999999999999888777666543
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.56 E-value=0.33 Score=44.36 Aligned_cols=189 Identities=15% Similarity=0.067 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHH----HHhhhccCCcHHHHHHHHHHHHhhh
Q 015939 86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVF----GVLNRKRRSEIAVLESAVRVLNLIV 161 (398)
Q Consensus 86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~----~lL~~~~~~~~~~~~~al~~L~~l~ 161 (398)
.+..+.+.+ +...+ .+.-++..+|-.+.+ +.....+.+.++. ..++ ..+.+ ...+..+--+++++.|+.
T Consensus 104 ~l~~l~kil-~WP~~--~~fPvLDLlRl~~l~-p~~~~~~~~~~~~-~~l~~~l~~~~~~--~~~p~n~ml~lR~l~NlF 176 (304)
T 3ebb_A 104 QLQILWKAI-NCPED--IVFPALDILRLSIKH-PSVNENFCNEKEG-AQFSSHLINLLNP--KGKPANQLLALRTFCNCF 176 (304)
T ss_dssp HHHHHHHHH-TSCTT--TCHHHHHHHHHHTTS-HHHHHHHHSTTTH-HHHHHHHHHTTCT--TSCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHH-cCCHH--hHHHHHHHHHHHHcC-ccHHHHhhccccc-hHHHHHHHHhcCC--CCChHHHHHHHHHHHHcc
Confidence 445555554 33332 677777777776654 4444444433122 3333 33332 122334577889999998
Q ss_pred cccchHHHhhHhhhcc-CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939 162 NENGVKEKLNRLILNT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND 240 (398)
Q Consensus 162 ~~~~~~~~~~~~il~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 240 (398)
.+... +..++.. ..+++.+...+...+..++..++.++.|++.........-....++..+..+++...+.++.-
T Consensus 177 ~~~~g----~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~Ealy 252 (304)
T 3ebb_A 177 VGQAG----QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATF 252 (304)
T ss_dssp GSHHH----HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCchh----HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHH
Confidence 76654 4543321 234455555555568889999999999998752110001111235556666776656889999
Q ss_pred HHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHHHH
Q 015939 241 AILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEKSI 286 (398)
Q Consensus 241 ~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~al 286 (398)
.++.+|.+|...+.....+.+ .|+-..+-++.+ .+..+++.+.|-
T Consensus 253 R~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~-~~~~~kv~~~~~ 298 (304)
T 3ebb_A 253 RLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS-VSEPAKVSECCR 298 (304)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG-CCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh-CCCchhHHHHHH
Confidence 999999999876665666654 444444444443 223445544433
No 167
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.078 Score=47.73 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=113.2
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h--hHHHhh-chhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDN-E--SKRRVL-ETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS- 254 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~--~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~- 254 (398)
-+| |-+-|.+.+...|..|...|..+.... . ...... ......+.+-+.+.+. +..++..++.+|..+...-.
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhh
Confidence 355 567888999999999999988765431 1 111111 1112344455677776 89999999999998864211
Q ss_pred ---hHH--HHHHcCChHHHHHH-hcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHH
Q 015939 255 ---VKA--QLVELGMVQILTRI-LSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAV 328 (398)
Q Consensus 255 ---~~~--~~v~~g~v~~Lv~l-L~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~ 328 (398)
.+. ...-...++.|++= + .+..+.++..+..+|..+......... .++.++..+...++.++..++
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l--~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGL--TSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHH
Confidence 111 11223467777753 5 346778888888888776531111111 123344455668999999999
Q ss_pred HHHHHhhccCCChhH-HHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 329 VVIWSMCCVYKDARV-KEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 329 ~~L~~l~~~~~~~~~-~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
..|..+....+.... ....+. .+++.+..++... ++.+|+.|..++-.+-+|
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence 999886543221110 111111 1223344455544 899999999999888775
No 168
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.31 Score=43.74 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=97.6
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-----hhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcCC
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDN-----ESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSVY 252 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~~ 252 (398)
...+.+-..+...+..++..++.+|..++..- ...........+++.|+. .|.+. .+.++..+..++..+...
T Consensus 55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGL 133 (278)
T ss_dssp SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence 34566667788889999999999999887541 111111111457777875 46666 677888888888877532
Q ss_pred cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC--HH--HHHHHhhccCcHHHHHHHHhccChhHHHHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC--SE--GRLALSEEASCAGRVVERVMKVGKTAREDAV 328 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~--~~--~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~ 328 (398)
...... .++.++..+. +.++.++..++..|..+... .. ...... ...++.+..++.+.++.+++.|.
T Consensus 134 ~~~~~~-----~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 134 DTSITQ-----SVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp SSSSHH-----HHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHH
T ss_pred cCcHHH-----HHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHH
Confidence 221111 2344555563 46889999999998887541 11 111111 12455677788889999999999
Q ss_pred HHHHHhhccCC
Q 015939 329 VVIWSMCCVYK 339 (398)
Q Consensus 329 ~~L~~l~~~~~ 339 (398)
.++..+...-|
T Consensus 205 ~l~~~ly~~~G 215 (278)
T 4ffb_C 205 NLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHhC
Confidence 99999887543
No 169
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.35 E-value=0.76 Score=40.15 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=67.5
Q ss_pred HHHHHHcCChHHHHHHhccc---------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939 256 KAQLVELGMVQILTRILSDS---------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED 326 (398)
Q Consensus 256 ~~~~v~~g~v~~Lv~lL~~~---------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~ 326 (398)
...+ ..||+..|+.+|... ..+......++.+|+.+..+..|...+..+++.+..++..+.+.++.++..
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3444 567888888888531 114466778999999999999999999989999999999998899999999
Q ss_pred HHHHHHHhhccC
Q 015939 327 AVVVIWSMCCVY 338 (398)
Q Consensus 327 a~~~L~~l~~~~ 338 (398)
++.+|..+|..+
T Consensus 116 ~leLL~~lc~~~ 127 (233)
T 2f31_A 116 AAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 999999999865
No 170
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.30 E-value=1.4 Score=41.58 Aligned_cols=177 Identities=18% Similarity=0.237 Sum_probs=110.6
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhc---c-----CCcHHHHHHHHHHHHh
Q 015939 89 VWIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRK---R-----RSEIAVLESAVRVLNL 159 (398)
Q Consensus 89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~---~-----~~~~~~~~~al~~L~~ 159 (398)
..++.|.+.... +.....+..|+.-.+..+. -.+.+. . +|+..|+.+|... . ..+......++++|..
T Consensus 70 ~yi~~L~~~~~~-~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 70 MYIQELRSGLRD-MHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc-hhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 356666655321 1223456666654444332 223444 5 7889999998531 1 1234556788889988
Q ss_pred hhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--h-HHHhhch---------hhHHHHHH
Q 015939 160 IVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--S-KRRVLET---------ENLLSALF 227 (398)
Q Consensus 160 l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i~~~---------~g~i~~Lv 227 (398)
+..+..+ ...++.+...+..|+..|.+.++.++..+..+|..++..++ + ...+... ..-+..++
T Consensus 147 lmN~~~G----~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv 222 (383)
T 3eg5_B 147 FMNNKFG----IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 222 (383)
T ss_dssp HTSSHHH----HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred Hhcchhh----HHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8876655 46668888999999999999999999999999998886643 2 3333210 12367788
Q ss_pred HHhccccCHHHHHHHHHHHHHhcCCc---chH----HHHHHcCChHHHHHHhc
Q 015939 228 DYLKLAEDQALNDAILSILITLSVYR---SVK----AQLVELGMVQILTRILS 273 (398)
Q Consensus 228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~----~~~v~~g~v~~Lv~lL~ 273 (398)
..|++..+.+.+.+++..+-.+.... +.| ..+...|..+. +.-|+
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i-l~~lr 274 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR 274 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence 88887546777777777666665433 233 33345655554 44465
No 171
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.17 E-value=0.8 Score=48.79 Aligned_cols=222 Identities=9% Similarity=0.074 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHhhhcccchHHHhhHhhhc----cCCChHH----HHHHHhcC---ChhhHHHHHHHHHHhhcCchhHH
Q 015939 146 EIAVLESAVRVLNLIVNENGVKEKLNRLILN----TYNCLPL----FLEILREG---NLDSKIGSIKILDSISLDNESKR 214 (398)
Q Consensus 146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~----~~g~i~~----Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~ 214 (398)
+-+.++.|+.++..++...... ... +. .....+. ++..|.+. .+-+|..|+++|..++..- ...
T Consensus 418 ~w~~reaal~algaia~~~~~~---~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~ 492 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNIT---NAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA 492 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCB---TTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH
T ss_pred hHHHHHHHHHHHHHHHHHhccc---cCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH
Confidence 3456688999998887532210 000 00 0022232 33345555 7889999999999998752 122
Q ss_pred HhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc---------hHHHHH--HcCChHHHHHHhcccC---cchh
Q 015939 215 RVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS---------VKAQLV--ELGMVQILTRILSDSR---TQIL 280 (398)
Q Consensus 215 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~---------~~~~~v--~~g~v~~Lv~lL~~~~---~~~~ 280 (398)
. ...+++.++..|.+. ++.++.+|+.+|.+++...+ .+..+. -...+..|+.++.... .+..
T Consensus 493 ~---l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 493 Q---LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp H---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred H---HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 2 246788899988877 78899999999999986421 122222 1235566667775310 0111
Q ss_pred hHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhc-----cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH
Q 015939 281 TVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMK-----VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT 354 (398)
Q Consensus 281 ~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~ 354 (398)
..+.++.+|..++..- +...... ...++.|+..+.. .++.....++.+|..+....+ ++... -.....++
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~-~~~~~-~~~~~~~p 644 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ-RQNLP-LLVDSMMP 644 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC-GGGHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-cchHH-HHHHHHHH
Confidence 3345666666554311 1111111 1244555555543 345566677888877776522 33332 23345677
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 355 KLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+...|+.. .....+-+..++..+.+
T Consensus 645 ~~~~iL~~~-~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 645 TFLTVFSED-IQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence 788888765 34455556665555544
No 172
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.99 E-value=0.76 Score=42.31 Aligned_cols=160 Identities=11% Similarity=0.122 Sum_probs=106.7
Q ss_pred HHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcc
Q 015939 199 SIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQ 278 (398)
Q Consensus 199 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~ 278 (398)
+-..|..|..+.+.-+-++. ..++..+..+..-+ +.++.++..+.|...|....-+..-. ...+|.++..+. -+++
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk-~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~-~h~e 338 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVR-SDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIE-IHPD 338 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHH-TTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHH-HCCC
T ss_pred HHHHHHHHhcccccccceee-cccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhc-cCCC
Confidence 33444444444444555666 67788888888777 78899999999999887665432211 346788888886 4678
Q ss_pred hhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc-------ChhHHHHHHHHHHHhh------------ccCC
Q 015939 279 ILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV-------GKTAREDAVVVIWSMC------------CVYK 339 (398)
Q Consensus 279 ~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~-------~~~~~~~a~~~L~~l~------------~~~~ 339 (398)
++++-...+.|.|...+....+++.-..|+|+.|-..+.+. +..-+..|++++.|-- ..+|
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 99999999999999987777766654569999999998762 2233455665554411 1111
Q ss_pred --------ChhHHHHHHhcCCHHHHHHHHhh
Q 015939 340 --------DARVKEAVVNSNGLTKLLLVMQS 362 (398)
Q Consensus 340 --------~~~~~~~~~~~g~~~~Ll~~l~~ 362 (398)
+...+...++-.++.+|...|.-
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01233444556778888888754
No 173
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.68 E-value=0.69 Score=49.64 Aligned_cols=152 Identities=6% Similarity=0.029 Sum_probs=90.5
Q ss_pred CChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhcccc----CHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939 191 GNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAE----DQALNDAILSILITLSVYRSVKAQLVELGMV 265 (398)
Q Consensus 191 ~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v 265 (398)
.+...++.++++++.++... +....-.- ..+++.|+.++.+.. ...++..++++|...+..-........ ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 47888999999999999873 22121111 568999999987521 222334566777666543222122221 144
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh-c----cCcHHHHHHH----HhccChhHHHHHHHHHHHhhc
Q 015939 266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE-E----ASCAGRVVER----VMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~----~g~v~~Lv~~----l~~~~~~~~~~a~~~L~~l~~ 336 (398)
..|++.|. ++.++++..|+.++.+||. +.+..+.. + ...++.++.. +.+-++.....+..++..+..
T Consensus 543 ~~L~~~l~--~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFMH--ETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHTT--CSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh--cCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45555552 3567899999999999996 33344431 1 1234444443 333567777788888888887
Q ss_pred cCCChhHHHHHH
Q 015939 337 VYKDARVKEAVV 348 (398)
Q Consensus 337 ~~~~~~~~~~~~ 348 (398)
..++...+...+
T Consensus 619 ~~~~~~~~~~~l 630 (1023)
T 4hat_C 619 EERSVAERNRLL 630 (1023)
T ss_dssp TCCSHHHHHHHH
T ss_pred hCCCHhhHHHHH
Confidence 665444344333
No 174
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.61 E-value=0.8 Score=40.81 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=110.5
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhh-hccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLN-RKRRSEIAVLESAVRVLNLIVNENGVKE 168 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~-~~~~~~~~~~~~al~~L~~l~~~~~~~~ 168 (398)
+...|.+.+. ..+.+|+..|......++ ...+.. +..++..+. ...+.+..+...++.+|..+...-.+
T Consensus 51 ~~~~lfs~d~--k~~~~ale~L~~~l~~~~--~~~~~~----lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~-- 120 (266)
T 2of3_A 51 LMSQLFHKDF--KQHLAALDSLVRLADTSP--RSLLSN----SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD-- 120 (266)
T ss_dssp HHHHHTCSCH--HHHHHHHHHHHHHHHHCH--HHHHHT----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhcCCCH--HHHHHHHHHHHHHhhhCh--HHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh--
Confidence 3444555443 477888888887664433 223332 233333221 00234566777888877765421111
Q ss_pred HhhHhhhc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939 169 KLNRLILN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI 245 (398)
Q Consensus 169 ~~~~~il~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a 245 (398)
+.+-+. ..-.+|.|++-+-.....+|..+-.+|..+... ..-..+++.++.-+++. +...+..++..
T Consensus 121 --~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~ 190 (266)
T 2of3_A 121 --TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSK-NARQRSECLLV 190 (266)
T ss_dssp --TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 000011 134689998888777778898888888776532 22244677888888888 88999999998
Q ss_pred HHHhcCC-cchHHHHHHcCCh---HHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 246 LITLSVY-RSVKAQLVELGMV---QILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 246 L~~Ls~~-~~~~~~~v~~g~v---~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
|..+-.. .-. ...++ +.+..++. +.|..++..|+.++..+-.
T Consensus 191 l~~li~~~G~~-----~~~~l~~~~~ia~ll~--D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 191 IEYYITNAGIS-----PLKSLSVEKTVAPFVG--DKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHCSG-----GGGGGCHHHHHGGGGG--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-----ccccccchHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 8888421 111 23478 99999994 5789999999988886543
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.53 E-value=4.5 Score=42.92 Aligned_cols=226 Identities=11% Similarity=0.037 Sum_probs=128.1
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhhhhhh---hcCCcHHHHH----HHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhh
Q 015939 99 ESENSCVDYLVKVAKFATGCEANRRFLA---SYGGFVEAVF----GVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN 171 (398)
Q Consensus 99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~---~~~g~v~~L~----~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~ 171 (398)
.+|..+..|+..+..++.........+. ......+.+. ..|.+..+..+.++..|+++|..++..-..
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----- 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----- 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-----
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-----
Confidence 3456677788888888754211110000 0102333333 334441112567789999999988764221
Q ss_pred HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch---------hHHHhhc-hhhHHHHHHHHhcccc----CHH
Q 015939 172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE---------SKRRVLE-TENLLSALFDYLKLAE----DQA 237 (398)
Q Consensus 172 ~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~----~~~ 237 (398)
.. ...+++.++..|.+.+..++.+|+.+|.+++...+ .+..+.. ....++.|+.++.... ...
T Consensus 492 ~~---l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 492 AQ---LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HH---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 11 23467888888888788999999999999987421 2333432 2457777788877641 011
Q ss_pred HHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcc---cCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHH
Q 015939 238 LNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSD---SRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGR 311 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~---~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~ 311 (398)
....++.+|..+... .+.....+. ..++.|+..+.. ..+++.....++.+|..++. .++....+. ...+|.
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~ 645 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPT 645 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHH
Confidence 234566666655321 111111111 144555555532 23455666677888887765 344444454 256788
Q ss_pred HHHHHhccChhHHHHHHHHHHHhh
Q 015939 312 VVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 312 Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
+..+|........+.+..++..+.
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHH
Confidence 888887766667777777776655
No 176
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.42 E-value=4.3 Score=37.16 Aligned_cols=196 Identities=8% Similarity=0.019 Sum_probs=136.6
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH----HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK----RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV 251 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 251 (398)
..+.+..|+..|..=+.+.|..++.+..++... ...+ ..+......+..|++-. .+++.--.+-..|+....
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---e~~diAl~~G~mLRecir 152 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHHHHHHHHT
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh---ccchhHhHHHHHHHHHHH
Confidence 457888999999988999999999999988765 2222 22222233444443333 345566666677777778
Q ss_pred CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHHHHHHhhc--cCcHHHHHHHHhccChhHHHHHH
Q 015939 252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEGRLALSEE--ASCAGRVVERVMKVGKTAREDAV 328 (398)
Q Consensus 252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~--~g~v~~Lv~~l~~~~~~~~~~a~ 328 (398)
++...+.+...+.+..+.+.++ .+.-++...|..+++.|- .+.....++... .-.....-++|.+++--++..++
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 8888888888888999999994 478899999999999964 466666666532 13566777888889999999999
Q ss_pred HHHHHhhccCCChhHHHHHHh----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 329 VVIWSMCCVYKDARVKEAVVN----SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 329 ~~L~~l~~~~~~~~~~~~~~~----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
..|..|-.. +.+...|.+ ..-+..+..+|++. +..+|-.|-.+.|.+-.
T Consensus 231 KLLgelLld---r~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---chHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999998764 333333322 33355555555555 77788777777766543
No 177
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.35 E-value=3.7 Score=35.66 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=94.3
Q ss_pred hhHHHHHHHHhccc----------cCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939 220 ENLLSALFDYLKLA----------EDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKM 288 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~ 288 (398)
.+|+..|+.+|..- .+.+....++.+|..+.-+......+. ..+++..|+..|. +..+.++..++.+
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~~r~~~leL 119 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCchHHHHHHHH
Confidence 57888899888642 134567789999999988887777776 5678888988884 5788899999999
Q ss_pred HHHHhCCHH--H-HHHHhh---------ccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC-CChh----HHHHHHhcC
Q 015939 289 LSIVATCSE--G-RLALSE---------EASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY-KDAR----VKEAVVNSN 351 (398)
Q Consensus 289 L~~La~~~~--~-~~~i~~---------~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~----~~~~~~~~g 351 (398)
|..+|..++ | ...+.+ ...-...+|+.+...+...-..++..+.|.-..+ ++-+ .+.++...|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 999987543 5 444431 1124555666665433333334444444543333 3323 445555565
Q ss_pred CHHHHHHHHhhcCcHHHHHH
Q 015939 352 GLTKLLLVMQSENEGIVRKM 371 (398)
Q Consensus 352 ~~~~Ll~~l~~~~~~~~k~~ 371 (398)
+..++..|+...++.....
T Consensus 200 -l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 200 -LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp -HHHHHHHHHHCCCHHHHHH
T ss_pred -hHHHHHHHhccCCHHHHHH
Confidence 4556677766556665443
No 178
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.05 E-value=4.7 Score=42.77 Aligned_cols=218 Identities=11% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939 99 ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILN 176 (398)
Q Consensus 99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~ 176 (398)
.+|..+..|+..+..++..-.... . ..++.++.++..-. +.++.++..++.+|..++..-..+ ...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~---~~~--- 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN---PAY--- 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------C---
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC---HHH---
Confidence 346678888888888875533211 1 34455555443211 346678899999999887432211 111
Q ss_pred cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCC--
Q 015939 177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLA-EDQALNDAILSILITLSVY-- 252 (398)
Q Consensus 177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~-- 252 (398)
-..+++.|+..|+ +.++..|+.+|..|+..- +..+.. ..+.+..|..++..+ .+.+.+..+..++..+...
T Consensus 544 l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 544 IPPAINLLVRGLN---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 1245677777773 788999999999999652 223321 245677777777764 2567888888888888542
Q ss_pred cchHHHHHHcCChHHHHHHhcc---cCc-chhhHHHHHHHHHHHhCCHH-----------------HHHHHhhccCcHHH
Q 015939 253 RSVKAQLVELGMVQILTRILSD---SRT-QILTVEKSIKMLSIVATCSE-----------------GRLALSEEASCAGR 311 (398)
Q Consensus 253 ~~~~~~~v~~g~v~~Lv~lL~~---~~~-~~~~~~~al~~L~~La~~~~-----------------~~~~i~~~~g~v~~ 311 (398)
.+.+...++. .++.++..+.. ... +++........|..|+..-. ....+. ...++.
T Consensus 619 ~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~ 695 (971)
T 2x1g_F 619 PEEIPKYLDI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPI 695 (971)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHH
Confidence 2444443332 44444443321 111 22233333444444432100 011122 246677
Q ss_pred HHHHHhc--cChhHHHHHHHHHHHhhc
Q 015939 312 VVERVMK--VGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 312 Lv~~l~~--~~~~~~~~a~~~L~~l~~ 336 (398)
+..++.. .++.+.+.++.++..++.
T Consensus 696 l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 696 FKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 7776654 367889999999988764
No 179
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.64 E-value=6.8 Score=36.82 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=92.5
Q ss_pred hhHHHHHHHHhccc----------cCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939 220 ENLLSALFDYLKLA----------EDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKM 288 (398)
Q Consensus 220 ~g~i~~Lv~lL~~~----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~ 288 (398)
.+|+..|+.+|..- .+......++++|..+.-+......+. ...+|..|+..|. +..+.++..++.+
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~~~~~~aleL 185 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPNMMIDAAKL 185 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 56789999888521 134667889999999988877777776 5678999999984 5788899999999
Q ss_pred HHHHhCCHH---HHHHHhh---------ccCcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChh----HHHHHHhcC
Q 015939 289 LSIVATCSE---GRLALSE---------EASCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDAR----VKEAVVNSN 351 (398)
Q Consensus 289 L~~La~~~~---~~~~i~~---------~~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~g 351 (398)
|..+|..++ +...+.+ ...-...+|..+... +...+..++..+=.+....++-+ .+.++.+.|
T Consensus 186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 265 (383)
T 3eg5_B 186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 265 (383)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 999997543 3444431 123466677777653 33444444433333444333333 445555666
Q ss_pred CHHHHHHHHhhcCcHHH
Q 015939 352 GLTKLLLVMQSENEGIV 368 (398)
Q Consensus 352 ~~~~Ll~~l~~~~~~~~ 368 (398)
..+ ++..|+...++..
T Consensus 266 l~~-il~~lr~~~~~~L 281 (383)
T 3eg5_B 266 LHQ-VLQELREIENEDM 281 (383)
T ss_dssp HHH-HHHHHTTSCCHHH
T ss_pred hHH-HHHHHhcCCChhH
Confidence 554 5556765544443
No 180
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.55 E-value=0.13 Score=45.31 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=37.8
Q ss_pred ccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939 14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQILSTK 61 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~ 61 (398)
..|.+|.++..-=+.=+ |||.|=..|+.+|+.. +...||.|+......
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46999999988544333 8999999999999964 356899999886544
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.12 E-value=2.3 Score=45.17 Aligned_cols=180 Identities=8% Similarity=0.040 Sum_probs=98.2
Q ss_pred CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHH
Q 015939 191 GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTR 270 (398)
Q Consensus 191 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~ 270 (398)
.+...++.|+.+|..++..-..... ......++.+..+..+..++.++..++++|..++..-........ .+++.|+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~ 553 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVR 553 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHH
Confidence 4667889999999999876221110 000223442222322212788999999999998753221111111 24455555
Q ss_pred HhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-cCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939 271 ILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-ASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAV 347 (398)
Q Consensus 271 lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 347 (398)
.| ++.++..|+.++..++. +.+..+... ...+..+..++.+ .+...+..+..++..++...+.++... .
T Consensus 554 ~l-----~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~-~ 625 (971)
T 2x1g_F 554 GL-----NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK-Y 625 (971)
T ss_dssp HH-----HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH-H
T ss_pred Hh-----ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH-H
Confidence 55 27899999999999994 223333211 2455666666766 467888999999988876433122222 1
Q ss_pred HhcCCHHHHHHH----HhhcC-cHHHHHHHHHHHHHHhc
Q 015939 348 VNSNGLTKLLLV----MQSEN-EGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 348 ~~~g~~~~Ll~~----l~~~~-~~~~k~~A~~lL~~l~~ 381 (398)
.+ ..++.++.. ++... ++..+......+..++.
T Consensus 626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 11 133333333 33221 33455566666666654
No 182
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.02 E-value=3.4 Score=38.11 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939 148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227 (398)
Q Consensus 148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv 227 (398)
++...+...|..|. ++++. ..- +++.+++..+..+.+-.+.++....+..|.-.+.....+..- ....+|.++
T Consensus 258 QVvtR~FDLL~LLm-HdSnA---IDG-FVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~ 330 (619)
T 3c2g_A 258 QVIIRTFDLLGLLL-HDSDA---IDG-FVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLL 330 (619)
T ss_dssp HHHHHHHHHHHHHC-CSHHH---HHH-HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccccc---ccc-eeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHH
Confidence 44455555555444 33331 233 668889999999999888899889999988888765444332 256889999
Q ss_pred HHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcc
Q 015939 228 DYLKLAEDQALNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+.+.-..+.++.-.....|.|...... .+...+..|+|+.|-..+..
T Consensus 331 ~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 331 RLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 998866578899999999999988776 44555699999999998863
No 183
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.91 E-value=3.2 Score=39.12 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred cCChHHHHHHhccc---------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939 262 LGMVQILTRILSDS---------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW 332 (398)
Q Consensus 262 ~g~v~~Lv~lL~~~---------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~ 332 (398)
.||+..|+.+|... ..+....-.++.+|+.+..+..|...+..+.+++..++..+.+.++.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 57888888887521 114466778999999999999999999989999999999988889999999999999
Q ss_pred HhhccCC
Q 015939 333 SMCCVYK 339 (398)
Q Consensus 333 ~l~~~~~ 339 (398)
.+|..++
T Consensus 126 alc~~~~ 132 (386)
T 2bnx_A 126 ALCILPQ 132 (386)
T ss_dssp HHHTCCS
T ss_pred HHHcCCC
Confidence 9998653
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.65 E-value=15 Score=38.66 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=97.5
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939 99 ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY 178 (398)
Q Consensus 99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~ 178 (398)
.+|..+..++..+..++..-... .. ..++.++..+....+++..++..++.++..++..-..+ ... -.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~-----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~---~~~---l~ 528 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN-----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH---PVM---IN 528 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS-----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC---HHH---HT
T ss_pred CchHHHHHHHHHHHHHHhhcCch-----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC---HHH---HH
Confidence 34666777888888887553221 12 44556666654423235667889999999887532211 122 25
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCc--c
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLA-EDQALNDAILSILITLSVYR--S 254 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~ 254 (398)
.+++.++..|++ +.++..|+.+|..++.. .+..+.. ..+.+..|..++... -+.+.+..+..++..+.... +
T Consensus 529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~ 604 (963)
T 2x19_B 529 SVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE 604 (963)
T ss_dssp TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence 789999998865 78999999999999864 2233332 245666677777753 25678888888888886432 3
Q ss_pred hHHHHHHcCChHHHHHHh
Q 015939 255 VKAQLVELGMVQILTRIL 272 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL 272 (398)
.....++. .++.+...+
T Consensus 605 ~~~~~~~~-l~~~l~~~l 621 (963)
T 2x19_B 605 EILKNLHS-LISPYIQQL 621 (963)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 44443332 455555444
No 185
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.91 E-value=2.2 Score=37.96 Aligned_cols=100 Identities=13% Similarity=0.237 Sum_probs=68.8
Q ss_pred CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939 130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD 209 (398)
Q Consensus 130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~ 209 (398)
-++|.|+.-+.. +...+++.+-.+|..+..-.+ -..+++.+++-+.+.+...|..++..+..+...
T Consensus 132 ~~lP~LveKlGd---~k~~vR~~~r~il~~l~~v~~-----------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 132 AFVPYLLLKTGE---AKDNMRTSVRDIVNVLSDVVG-----------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 356777766655 444555666666655543111 112467777778888999999999888877654
Q ss_pred chhHHHhhchhhHH---HHHHHHhccccCHHHHHHHHHHHHHh
Q 015939 210 NESKRRVLETENLL---SALFDYLKLAEDQALNDAILSILITL 249 (398)
Q Consensus 210 ~~~~~~i~~~~g~i---~~Lv~lL~~~~~~~~~~~a~~aL~~L 249 (398)
.... . ..++ +.+..++.+. |..++.+|+.++..+
T Consensus 198 ~G~~----~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 AGIS----P-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVAC 234 (266)
T ss_dssp HCSG----G-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHH
T ss_pred cCCC----c-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 2221 1 3467 9999999998 999999999998866
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.78 E-value=6.8 Score=36.83 Aligned_cols=183 Identities=16% Similarity=0.198 Sum_probs=109.4
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhc---c-----CCcHHHHHHHHHHHHhh
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRK---R-----RSEIAVLESAVRVLNLI 160 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~---~-----~~~~~~~~~al~~L~~l 160 (398)
.++.|.+.... +....-+..|+...+.++. -.+.+. . ||+..|+.+|... . ..+......++.+|..+
T Consensus 9 yv~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 9 YIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHTSCCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccch-HHHHHHHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 45566654321 1122344555543333332 222333 5 7888888888542 1 11345567888999888
Q ss_pred hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--h-HHHhhc---------hhhHHHHHHH
Q 015939 161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--S-KRRVLE---------TENLLSALFD 228 (398)
Q Consensus 161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i~~---------~~g~i~~Lv~ 228 (398)
..+..+ ...++...+++..++..|.+.++.++..++.+|..++..++ . ...+.. ...-+..||.
T Consensus 86 mN~~~G----l~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~ 161 (386)
T 2bnx_A 86 MNNKFG----IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLD 161 (386)
T ss_dssp TSSHHH----HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred hCCHHH----HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 877665 45557788999999999998899999999999988877643 3 332221 0123456788
Q ss_pred HhccccCHHHHHHHHHHHHHhcCCcc---h----HHHHHHcCChHHHHHHhcccCcchhh
Q 015939 229 YLKLAEDQALNDAILSILITLSVYRS---V----KAQLVELGMVQILTRILSDSRTQILT 281 (398)
Q Consensus 229 lL~~~~~~~~~~~a~~aL~~Ls~~~~---~----~~~~v~~g~v~~Lv~lL~~~~~~~~~ 281 (398)
.|.+..+.+.+.+++..+-.+....+ . |..+...|.- .+++-|+. ..++.+
T Consensus 162 ~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~-~il~~Lr~-~~~~~L 219 (386)
T 2bnx_A 162 GLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELRE-IENEDM 219 (386)
T ss_dssp HTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTT-CCCHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH-HHHHHHhc-cCChhH
Confidence 88765467777777766666644332 2 3344456544 44555542 234443
No 187
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.07 E-value=9.7 Score=40.16 Aligned_cols=177 Identities=9% Similarity=0.071 Sum_probs=103.1
Q ss_pred hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc---cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939 189 REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK---LAEDQALNDAILSILITLSVYRSVKAQLVELGMV 265 (398)
Q Consensus 189 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v 265 (398)
.+.+...++.++.+|..++..-... . ...++.++..|. ++ ++.++..+++++..++..-....... ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~-~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----Y-SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----C-CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----h-hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH-HHHH
Confidence 3447778899999999998762110 0 123444444432 23 67899999999999875422111233 3588
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-cCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChh
Q 015939 266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-ASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDAR 342 (398)
Q Consensus 266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~ 342 (398)
+.|+..|. ++.++..|+.+|..++. +.+..+... ...+..+..++.+ .+...+.....++..++...+ .+
T Consensus 532 ~~l~~~l~----~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~ 604 (963)
T 2x19_B 532 PLVLHALG----NPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VE 604 (963)
T ss_dssp HHHHHHTT----CGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHHHhC----CchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HH
Confidence 88888883 37899999999999984 222223210 1233344444554 356788888999988886443 22
Q ss_pred HHHHHHhcCCHHHHHHHHh----hcCcHHHHHHHHHHHHHHh
Q 015939 343 VKEAVVNSNGLTKLLLVMQ----SENEGIVRKMCGDLVKVLG 380 (398)
Q Consensus 343 ~~~~~~~~g~~~~Ll~~l~----~~~~~~~k~~A~~lL~~l~ 380 (398)
.....+ ...++.+...++ ...++..+.....++..++
T Consensus 605 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 605 EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 222222 223444444332 2235666665555555443
No 188
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.48 E-value=0.53 Score=33.79 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=37.2
Q ss_pred ccccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
-.|-||++- --+|.+. .|+...||.|.+-=.++|+..||+|+..++
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 479999875 2335554 499999999999988889999999998876
No 189
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.23 E-value=26 Score=37.25 Aligned_cols=266 Identities=10% Similarity=0.050 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccC-CcHHHHHHHHHHHHhhhc-
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR-SEIAVLESAVRVLNLIVN- 162 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~-~~~~~~~~al~~L~~l~~- 162 (398)
+.+...+...-+++.+.+.+.+|-.-|.++-+. |++......+|.+ +. .+..++.-|+.+|.+...
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----------p~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----------STGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----------hhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 345555544444433334566666666655432 2555666677765 32 145566777777765543
Q ss_pred -ccc----hHHHhhHhhhccCCChHHHHHHHhc-----CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc
Q 015939 163 -ENG----VKEKLNRLILNTYNCLPLFLEILRE-----GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL 232 (398)
Q Consensus 163 -~~~----~~~~~~~~il~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~ 232 (398)
+.+ . +.. .-..++.++.. ++..++...+.+|..+...+... .=.+.++.|+.++++
T Consensus 74 l~~e~~~~~----~~~------lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~ 139 (980)
T 3ibv_A 74 WNNESNLLE----LQM------IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAA 139 (980)
T ss_dssp CCTTTSHHH----HHH------HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH
T ss_pred CChhhhHHH----HHH------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcC
Confidence 112 2 111 12233333332 35678888888888887653110 114677888888876
Q ss_pred ccCH-HHHHHHHHHHHHhcC---C------cc--h-----HHHHHHc---CChHHHHHHhcc--cCcchhhHHHHHHHHH
Q 015939 233 AEDQ-ALNDAILSILITLSV---Y------RS--V-----KAQLVEL---GMVQILTRILSD--SRTQILTVEKSIKMLS 290 (398)
Q Consensus 233 ~~~~-~~~~~a~~aL~~Ls~---~------~~--~-----~~~~v~~---g~v~~Lv~lL~~--~~~~~~~~~~al~~L~ 290 (398)
+ ++ ......+++|..++. + .+ . +..|.+. -+++.+..+|.. ...++.++..++.+|.
T Consensus 140 ~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~ 218 (980)
T 3ibv_A 140 S-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYA 218 (980)
T ss_dssp H-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5 33 345556666664421 1 00 1 1222211 014445555532 1246678888998888
Q ss_pred HHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-cCcHHHH
Q 015939 291 IVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-ENEGIVR 369 (398)
Q Consensus 291 ~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-~~~~~~k 369 (398)
..... -....+. +...++.+.+++. ++..++.|+.+|..+.....+++.+..+++.=.+...+..+.. ..+....
T Consensus 219 s~i~w-i~~~~i~-~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~ 294 (980)
T 3ibv_A 219 QWVSW-ININLIV-NEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFD 294 (980)
T ss_dssp HHTTT-SCHHHHH-CHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHH
T ss_pred HHHhh-cCHHhhh-cchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHH
Confidence 87762 1223444 3466777776665 5889999999999988766544444444332111122222221 2345555
Q ss_pred HHHHHHHHHHhc
Q 015939 370 KMCGDLVKVLGK 381 (398)
Q Consensus 370 ~~A~~lL~~l~~ 381 (398)
++-++++..+++
T Consensus 295 ~~la~L~~~~ge 306 (980)
T 3ibv_A 295 EHVAKLINAQGV 306 (980)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 190
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.22 E-value=6 Score=38.12 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=81.2
Q ss_pred hcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939 189 REGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI 267 (398)
Q Consensus 189 ~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~ 267 (398)
..|+...+.-|+..|.....+ ++.. ..++..+++|..+. +..++..|++.|..+|.+ ++..+ .++.
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDv 104 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADI 104 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHH
Confidence 356788999999999977665 5543 35788999999999 999999999999999998 66555 4567
Q ss_pred HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939 268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS 333 (398)
Q Consensus 268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~ 333 (398)
|+++|+. +++.-....-..|..|-. ++. |.+..+..-+..+++.+++.++..|..
T Consensus 105 L~QlLqt--dd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 105 LTQLLQT--DDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhc--cchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 9999963 344333333333333322 221 233334444444677777777777744
No 191
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.00 E-value=1.3 Score=36.21 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=60.1
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+.|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++....++.+|+++..+++.-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34457777778899999999999988887754 67777888888899999988765678999999999888776
No 192
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.76 E-value=40 Score=35.83 Aligned_cols=216 Identities=9% Similarity=0.098 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHhhh-hhh----hhhhhhhcCCcHHHHH
Q 015939 66 NLTLHRLIAHWSHQ---LTVPEQEVRVWIEKIKSENE-SENSCVDYLVKVAKFATG-CEA----NRRFLASYGGFVEAVF 136 (398)
Q Consensus 66 n~~l~~~i~~~~~~---~p~p~~~i~~l~~~l~~~~~-~~~~~~~al~~L~~l~~~-~~~----~r~~i~~~~g~v~~L~ 136 (398)
+...++.+..|.+. .| +........+..+.. +.+.+.-|+..|....+. .++ .+..+. ..|+
T Consensus 21 d~~~r~~A~~~L~~~q~sp---~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr------~~ll 91 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSS---TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR------DSVW 91 (980)
T ss_dssp CHHHHHHHHHHHHHHHHST---THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH------HHHH
T ss_pred CHHHHHHHHHHHHHHHcCh---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH------HHHH
Confidence 45567777888753 33 244555555655431 334677788887765542 222 333333 3345
Q ss_pred HHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcC--c-
Q 015939 137 GVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLD--N- 210 (398)
Q Consensus 137 ~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~--~- 210 (398)
.++.+.. ....-++.+...+|..+....-. -.=.+.++.++.++..++. .......++|..|..+ +
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p--------~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYP--------SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT--------TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc--------ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence 5554311 12334556777777777643211 0124678888988887654 3333444455533332 0
Q ss_pred -------------hhHHHhhch--hhHHHHHHHHhcc---ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHh
Q 015939 211 -------------ESKRRVLET--ENLLSALFDYLKL---AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRIL 272 (398)
Q Consensus 211 -------------~~~~~i~~~--~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL 272 (398)
+.+..+... ..+++....+|.. ..+++.+..++.+|......-+. ..+++.+.++.+..+|
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHT
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHc
Confidence 012333221 1123444444443 12678889999999988775443 3445567888888888
Q ss_pred cccCcchhhHHHHHHHHHHHhC---CHHHHHHHh
Q 015939 273 SDSRTQILTVEKSIKMLSIVAT---CSEGRLALS 303 (398)
Q Consensus 273 ~~~~~~~~~~~~al~~L~~La~---~~~~~~~i~ 303 (398)
. ++.+...|+.+|..+.. .++.+..+.
T Consensus 243 ~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 243 Q----IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp T----SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred C----ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 4 47889999999988765 455555444
No 193
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=85.45 E-value=0.13 Score=30.09 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.7
Q ss_pred cccccCccccCCCceecC
Q 015939 13 LFRCPISLDVMKSPVSLC 30 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~ 30 (398)
-|+||+|..-+..|-.|.
T Consensus 5 GFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 5 GFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEECTTTCCEESSHHHHH
T ss_pred ccCCcHHHHHcCCHHHHH
Confidence 599999999988886654
No 194
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.38 E-value=1.5 Score=38.09 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+..|.+-|...++.++-.|+.+|..+..+.+ .....++.....+..|..+++....+.+|++...+++..+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG-~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCG-QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4457777778999999999999999888755 56777788888888888888777678999999999988876
No 195
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.18 E-value=11 Score=36.24 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHH
Q 015939 71 RLIAHWSHQLTVP-EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAV 149 (398)
Q Consensus 71 ~~i~~~~~~~p~p-~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~ 149 (398)
..|.+|+...|+- ...+..++......+.. .+.+|++.|-.+|++ ++ +. .++..|+.+|.. .++ ..
T Consensus 50 Q~I~kffk~FP~l~~~Ai~a~lDLcEDed~~--IR~qaik~Lp~~ck~--~~---i~---kiaDvL~QlLqt-dd~--~E 116 (507)
T 3u0r_A 50 QFIPKFFKHFPELADSAINAQLDLCEDEDVS--IRRQAIKELPQFATG--EN---LP---RVADILTQLLQT-DDS--AE 116 (507)
T ss_dssp HHHHHHGGGCGGGHHHHHHHHHHHHTCSSHH--HHHHHHHHGGGGCCT--TC---HH---HHHHHHHHHTTC-CCH--HH
T ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcccHH--HHHHHHHhhHHHhhh--hh---hh---hHHHHHHHHHhc-cch--HH
Confidence 3455556677765 34456566666655544 789999999999977 22 33 446778888886 322 22
Q ss_pred HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939 150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD 204 (398)
Q Consensus 150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 204 (398)
+...-.+|..+...++ .+.+..+..-+..++..+|+.+...|.
T Consensus 117 ~~~V~~sL~sllk~Dp------------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDA------------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCh------------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 2333344544443222 134555666666678888998888886
No 196
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=84.76 E-value=24 Score=32.33 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=159.8
Q ss_pred hhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH-HhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHH
Q 015939 125 LASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE-KLNRLILNTYNCLPLFLEILREG--NLDSKIGSIK 201 (398)
Q Consensus 125 i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~-~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~ 201 (398)
+-.. +.+..|+..|.. -+ -+.+..+..++.++.....+.. ....++... |.++..|-.| ++++-..+-.
T Consensus 74 i~~~-dll~~Li~~l~~-L~--fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~----peil~~L~~gYe~~diAl~~G~ 145 (341)
T 1upk_A 74 LYNS-GLLSTLVADLQL-ID--FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ----QNILFMLLKGYESPEIALNCGI 145 (341)
T ss_dssp HHHH-SHHHHHHHTGGG-SC--HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC----THHHHHHHHGGGSTTTHHHHHH
T ss_pred HHHh-CHHHHHHHhccc-CC--chhhccHHHHHHHHHhcccCCCCchhHHHHcC----HHHHHHHHHhhccchhHhHHHH
Confidence 3344 778888887776 33 3445777777777776544311 111332223 3333444344 6777778888
Q ss_pred HHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcC---ChHHHHHHhcccCc
Q 015939 202 ILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELG---MVQILTRILSDSRT 277 (398)
Q Consensus 202 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g---~v~~Lv~lL~~~~~ 277 (398)
+|+....++.....+.. .+.+..+.+....+ +.++...|..++..|- .+......+.+.+ .+...-.+|. ++
T Consensus 146 mLRecir~e~la~~iL~-~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~--S~ 221 (341)
T 1upk_A 146 MLRECIRHEPLAKIILW-SEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--SE 221 (341)
T ss_dssp HHHHHHTSHHHHHHHHH-SGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--CS
T ss_pred HHHHHHHhHHHHHHHhc-cHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc--CC
Confidence 99999999888888877 56677888999988 8999999999999884 4444444444322 3555667774 46
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHH---HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc-CCChhHHHHHHhcCCH
Q 015939 278 QILTVEKSIKMLSIVATCSEGRLA---LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV-YKDARVKEAVVNSNGL 353 (398)
Q Consensus 278 ~~~~~~~al~~L~~La~~~~~~~~---i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~g~~ 353 (398)
+--.++.++..|..|-.+..+..- .+.+..-+..++.+|++.+...|-.|..+.--...+ ...+.+...++..-
T Consensus 222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr-- 299 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ-- 299 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--
T ss_pred cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH--
Confidence 778889999999998876655443 344556688888889999999999999888665543 23344555554432
Q ss_pred HHHHHHHhh---c--CcHHHHHHHHHHHHHHhc
Q 015939 354 TKLLLVMQS---E--NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 354 ~~Ll~~l~~---~--~~~~~k~~A~~lL~~l~~ 381 (398)
.+|+..+.. + .++...+-=.-+++.+.+
T Consensus 300 ~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 300 AKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp HHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence 355555532 2 234555555567777666
No 197
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.72 E-value=2.8 Score=33.32 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=56.6
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+..|.+-|...++.++-.|+.+|..+..+.| .....++.....+..|+.++... ++.+|++...+++..+.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 4456777777899999999999988887654 56677777777888888888654 78999999999988776
No 198
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=83.56 E-value=0.31 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.173 Sum_probs=15.2
Q ss_pred CCcccccCccccCCCceecC
Q 015939 11 PNLFRCPISLDVMKSPVSLC 30 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~ 30 (398)
|..|.||+|+..|-||=++.
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~~ 20 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTLQ 20 (28)
T ss_dssp CCCEECTTSSCEESSHHHHH
T ss_pred CCcccCccccccCcChHHHH
Confidence 45789999999888875543
No 199
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.07 E-value=2.4 Score=36.50 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
+..|.+-|...++.++..|+.+|..+..+.+ .....++.....+..|..++....+..+|+++..+++.-+.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG-~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCG-APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-HHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4456667777899999999999999888754 56667777778888888888776678999999998888776
No 200
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.68 E-value=3.7 Score=32.96 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=59.4
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-+...++.++-.|+.+|..+..+.| .....++.....+..|+.++.. ..++.+|++...+++.-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34467777888999999999999999888755 6777888888889999988853 3468999999999988776
No 201
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.46 E-value=14 Score=33.34 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred HHHHhhhc---cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-
Q 015939 135 VFGVLNRK---RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-TYNCLPLFLEILREGNLDSKIGSIKILDSISLD- 209 (398)
Q Consensus 135 L~~lL~~~---~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~- 209 (398)
+..++++. ..++....+.|+..|..++.+=.-. ..|+. +...+..|+ +....++.+++.|+++|..-..+
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G----~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHG----YKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHH----HHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhh----hHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence 34555551 1224446788899998888643321 22232 323333333 22344678899999999977776
Q ss_pred chhHHHhhc-hhhHHHHHHHHhccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhH
Q 015939 210 NESKRRVLE-TENLLSALFDYLKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTV 282 (398)
Q Consensus 210 ~~~~~~i~~-~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~ 282 (398)
+.....|.. ....+..+..-|... ....+++.-+.+|-.|..+.. .+ ...++..|++++.....++.++
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence 544444432 345666666555431 234577888999999987752 11 2457788888885322378899
Q ss_pred HHHHHHHHHHh
Q 015939 283 EKSIKMLSIVA 293 (398)
Q Consensus 283 ~~al~~L~~La 293 (398)
.+++.++..+-
T Consensus 178 ~Kvl~li~d~f 188 (315)
T 3qml_C 178 IKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99988888765
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.45 E-value=2.9 Score=34.50 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=59.2
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+.|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++.. .....+|+++..+++.-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999999887754 5677788888899999988852 2357999999999988776
No 203
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=80.85 E-value=0.087 Score=38.49 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=27.7
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
..||.|.+.|. + ..|+.+|..|=..+ .. ...||.|+++|+
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f-~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFI-EM-KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEE-EE-EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchh-hc-cccCcchhhHHH
Confidence 68999998875 2 34655588883332 21 347999999876
No 204
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.83 E-value=1.3 Score=43.63 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHH
Q 015939 193 LDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRI 271 (398)
Q Consensus 193 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~l 271 (398)
..+|+.|+.+|..+ .. ++. ..++..|+..+..+ .-+++..++-.|..+ .+.... =.++++.++.-
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhh
Confidence 47899999999998 55 332 24566666666666 789999999999999 111100 13467788888
Q ss_pred hcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHH----Hhcc--ChhHHHHHHHHHHHhhccCCChhHHH
Q 015939 272 LSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVER----VMKV--GKTAREDAVVVIWSMCCVYKDARVKE 345 (398)
Q Consensus 272 L~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~----l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~ 345 (398)
|+ +.|++|+..|+.+|.-++ .+ ..++.++.. |.+- =..........|..|+....+
T Consensus 308 L~--D~DDDVRAVAAetLiPIA-~p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----- 369 (800)
T 3oc3_A 308 LS--SPDEDIKLLSAELLCHFP-IT----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----- 369 (800)
T ss_dssp TT--CSSHHHHHHHHHHHTTSC-CS----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-----
T ss_pred cC--CcccHHHHHHHHHhhhhc-ch----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-----
Confidence 84 478899999999999988 12 334444444 3331 122244556677777766321
Q ss_pred HHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939 346 AVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV 378 (398)
Q Consensus 346 ~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~ 378 (398)
.......+|.|--.+... -..+|..+...|..
T Consensus 370 a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t 401 (800)
T 3oc3_A 370 LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKN 401 (800)
T ss_dssp CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence 011136677777777655 77888877665543
No 205
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.55 E-value=4.2 Score=43.61 Aligned_cols=99 Identities=7% Similarity=0.025 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHhcCCcc-h-HHHHHHcCChHHHHHHhcccC---cchhhHHHHHHHHHHHhCCHHHHHHHhhccCcH
Q 015939 235 DQALNDAILSILITLSVYRS-V-KAQLVELGMVQILTRILSDSR---TQILTVEKSIKMLSIVATCSEGRLALSEEASCA 309 (398)
Q Consensus 235 ~~~~~~~a~~aL~~Ls~~~~-~-~~~~v~~g~v~~Lv~lL~~~~---~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v 309 (398)
+...+++++.++..++.+.. . -..++. .+++.|+.++.... ....++..++++|...+.--........ ..+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 67889999999999986543 2 222222 37788888874211 2223444667888776652221122221 344
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939 310 GRVVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 310 ~~Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
..|++.|....+.+++.|+.++.++|.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 445555555678899999999999995
No 206
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.52 E-value=16 Score=39.14 Aligned_cols=143 Identities=6% Similarity=0.021 Sum_probs=79.3
Q ss_pred CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939 191 GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRSVKAQLVELGMV 265 (398)
Q Consensus 191 ~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v 265 (398)
.+...++.++.+++.++.. .+....-.- ..+++.|+.+.... ..+-++..+++++...+..-........ .++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence 3677889999999999865 111111111 34556666654321 1333333577777776643221122222 256
Q ss_pred HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh-hcc----CcHHH----HHHHHhccChhHHHHHHHHHHHhhc
Q 015939 266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS-EEA----SCAGR----VVERVMKVGKTAREDAVVVIWSMCC 336 (398)
Q Consensus 266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~-~~~----g~v~~----Lv~~l~~~~~~~~~~a~~~L~~l~~ 336 (398)
+.+++.|. ++++.++..|+.+|.+++.. .+..+. ... ..++. +..++..-+.........++..+..
T Consensus 543 ~~ll~~l~--~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMH--ETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77777774 46789999999999999972 233332 011 22333 3344444455555666666666665
Q ss_pred cCC
Q 015939 337 VYK 339 (398)
Q Consensus 337 ~~~ 339 (398)
..+
T Consensus 619 ~~~ 621 (1049)
T 3m1i_C 619 EER 621 (1049)
T ss_dssp TCC
T ss_pred cCC
Confidence 443
No 207
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.37 E-value=4.8 Score=32.84 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=55.2
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
++..|..-|.++++.++..|+.+|..+..+ ......+.. ..++..|+++++...++.++..++..|..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 355666667778888999999999999887 456667766 7899999999986457888888888877664
No 208
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.11 E-value=3 Score=33.49 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=59.3
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-|...++.++-.|+.+|-.+..+.| .....++.....+..|+.++.. ..+..+|++...+++.-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999999888755 6777888888889888888763 2367999999998888776
No 209
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=79.66 E-value=34 Score=36.53 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=103.0
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHhhh-----hhhhhhhhhhcCCcHHHHHHHhhhcc-CC-----cHHHHHHHHHHHH
Q 015939 90 WIEKIKSENESENSCVDYLVKVAKFATG-----CEANRRFLASYGGFVEAVFGVLNRKR-RS-----EIAVLESAVRVLN 158 (398)
Q Consensus 90 l~~~l~~~~~~~~~~~~al~~L~~l~~~-----~~~~r~~i~~~~g~v~~L~~lL~~~~-~~-----~~~~~~~al~~L~ 158 (398)
+...+.++. +.+.+.-|+..|++..+. +++.|..+.+ .|+..+.+.. ++ +..++.....++.
T Consensus 53 l~~iL~~s~-~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~------~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia 125 (1049)
T 3m1i_C 53 ADQILQFST-NPQSKFIALSILDKLITRKWKLLPNDHRIGIRN------FVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1049)
T ss_dssp HHHHHHHCS-CHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH------HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHhhCC-CHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH------HHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence 334444332 234677788888876543 2334444443 2444443311 11 1344566666676
Q ss_pred hhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-ch--------h-----HHHhhc-hhhHH
Q 015939 159 LIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NE--------S-----KRRVLE-TENLL 223 (398)
Q Consensus 159 ~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~--------~-----~~~i~~-~~g~i 223 (398)
.++..+-. -.=++.++.|+..++ ++...++.+..+|..|... .+ . +..+.. ...++
T Consensus 126 ~Ia~~~~p--------~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~ 196 (1049)
T 3m1i_C 126 QILKQEWP--------QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIF 196 (1049)
T ss_dssp HHHHHHTT--------TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCc--------ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 66643211 012467899999986 5555667777788777643 11 0 122222 12344
Q ss_pred HHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 224 SALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 224 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
..+..+|.+..+++++..++.++.+....-+.-. +.+...++.+.+.+. .++++...|+.+|..+..
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l---~~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM---TSPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH---HSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC---CCHhHHHHHHHHHHHHHh
Confidence 5555666655467889999999988766544222 344556666663332 267788888888888764
No 210
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.44 E-value=5.3 Score=34.53 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=57.0
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
++..|..-|.+.++.++..|+.+|..+..+ ......|.. ..++..|+++++...++.+++.++..|...+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 466667777888999999999999999988 345677766 7889999999987667889999998888775
No 211
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.35 E-value=6.4 Score=31.16 Aligned_cols=69 Identities=9% Similarity=0.217 Sum_probs=53.7
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
++..+..-|.++++.++..|..+|..+..+ ......+.. ..++..|+++++.. ++.++...+..+...+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKG-HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 355556667777888888999999988887 345556665 78999999999765 8889999988888765
No 212
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.01 E-value=83 Score=33.68 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=77.2
Q ss_pred ChHHHHHHHhc----CChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHH----HhccccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILRE----GNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFD----YLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~----lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
.+..+..++.+ .++.++..+..++..|...- .+. .... ...++.+.+ .+... +.+.+..++++|.|+-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~-~~c~-~~~v~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-VSCP-DELLQPLHDLLSQSSDRA-KEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-SSCC-GGGTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-CCCC-HHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhccC
Confidence 36666777764 35667777777777665431 000 0111 223444444 44555 6778889999999986
Q ss_pred CCcchHHHHHHcCChHHHHHHhcc-----cCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhc--cChh
Q 015939 251 VYRSVKAQLVELGMVQILTRILSD-----SRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMK--VGKT 322 (398)
Q Consensus 251 ~~~~~~~~~v~~g~v~~Lv~lL~~-----~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~--~~~~ 322 (398)
.. ..++.|..++.. .+....++..|+.+|+.++.. ++..+. .+..+..+ .+++
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~---------il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE---------IVLPIFLNVAIKSE 529 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH---------HHHHHHHCTTSCHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH---------HHHHHhcCCCCChH
Confidence 53 356777777632 112346777899999999852 222222 34445533 5677
Q ss_pred HHHHHHHHHHH
Q 015939 323 AREDAVVVIWS 333 (398)
Q Consensus 323 ~~~~a~~~L~~ 333 (398)
++-.|+.+|..
T Consensus 530 vRiaA~~~Lm~ 540 (1056)
T 1lsh_A 530 LRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766643
No 213
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=76.01 E-value=36 Score=30.67 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=95.6
Q ss_pred hHHHHHHHhcC------ChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 181 LPLFLEILREG------NLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 181 i~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
+....+++++| +.+....|...|..++-+-+.-..|.. ....+..|+ +.... ++..++.|.++|..--.+.
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccC
Confidence 44555666666 445567788888899988776666665 344455555 33343 6778999999998777765
Q ss_pred chHHHHH-H--cCChHHHHHHhcc----c-CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhH
Q 015939 254 SVKAQLV-E--LGMVQILTRILSD----S-RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV--GKTA 323 (398)
Q Consensus 254 ~~~~~~v-~--~g~v~~Lv~lL~~----~-~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~ 323 (398)
+.....| + ..-|..+..-|.. + .....++..-+++|..|..++ ..+. ..++..|.+++... ++.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F~--~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDLP--IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC----CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhhh--hccHHHHHHHHccCCCCHHH
Confidence 5333332 2 3344444444421 1 123467778899999999876 2232 24668888888776 8889
Q ss_pred HHHHHHHHHHhh
Q 015939 324 REDAVVVIWSMC 335 (398)
Q Consensus 324 ~~~a~~~L~~l~ 335 (398)
|..++.++..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 998888887765
No 214
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=76.00 E-value=1.3 Score=39.03 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=76.0
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH-----HHhcCCcc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL-----ITLSVYRS 254 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL-----~~Ls~~~~ 254 (398)
....+..+++..++.+|..++..|. .+.|..+++++ ++.++..++..| ..|..+++
T Consensus 75 ~~~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~-d~~VR~~aA~~l~~~~L~~L~~D~d 135 (244)
T 1lrv_A 75 PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLPLEQLEQMAADRD 135 (244)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSCTGGGGGGTTCSS
T ss_pred CHHHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCC-CHHHHHHHHHhCCHHHHHHHHcCCC
Confidence 3556667777778888888775421 02344555555 666666555432 11121111
Q ss_pred --hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH-
Q 015939 255 --VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI- 331 (398)
Q Consensus 255 --~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L- 331 (398)
.|..++..-..+.+..++ .++++.|+..+... -..+.+..++.+.+..++..++..|
T Consensus 136 ~~VR~~aA~~l~~~~l~~l~--~D~d~~VR~~aa~~------------------l~~~ll~~ll~D~d~~VR~aaa~~l~ 195 (244)
T 1lrv_A 136 YLVRAYVVQRIPPGRLFRFM--RDEDRQVRKLVAKR------------------LPEESLGLMTQDPEPEVRRIVASRLR 195 (244)
T ss_dssp HHHHHHHHHHSCGGGGGGTT--TCSCHHHHHHHHHH------------------SCGGGGGGSTTCSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCHHHHHHHH--cCCCHHHHHHHHHc------------------CCHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 122222211222233333 23455555544442 1123333445566777777666432
Q ss_pred ----HHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939 332 ----WSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD 374 (398)
Q Consensus 332 ----~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~ 374 (398)
..+... ++..++..+++.-+.+.| ..| .+.+..+|+.|..
T Consensus 196 ~~~L~~Ll~D-~d~~VR~~aa~~l~~~~L-~~L-~D~~~~VR~aa~~ 239 (244)
T 1lrv_A 196 GDDLLELLHD-PDWTVRLAAVEHASLEAL-REL-DEPDPEVRLAIAG 239 (244)
T ss_dssp GGGGGGGGGC-SSHHHHHHHHHHSCHHHH-HHC-CCCCHHHHHHHHC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHcCCHHHH-HHc-cCCCHHHHHHHHH
Confidence 223222 235566666665555544 445 5557888888754
No 215
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.47 E-value=40 Score=36.20 Aligned_cols=128 Identities=10% Similarity=0.017 Sum_probs=82.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc------ccCHHHHHHHHHHHHHhcCCcchH
Q 015939 183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL------AEDQALNDAILSILITLSVYRSVK 256 (398)
Q Consensus 183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~~a~~aL~~Ls~~~~~~ 256 (398)
.|.+.+..++.+-+..++++|+|+... ..++.|..++.. .....++.+|+.+|..+.......
T Consensus 444 ~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~ 512 (1056)
T 1lsh_A 444 LLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK 512 (1056)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred HHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence 344445566767677788888887652 346677777642 123567788999999987543221
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhh
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMC 335 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~ 335 (398)
+-+.++.+..+...+++++..|+.+|..-.-....-+ .++..+.. .+..+.......|.+++
T Consensus 513 -------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~----------~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 513 -------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVS----------MVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp -------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHH----------HHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHHHH----------HHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 2356778886566788888888877755433333333 34445554 67777888888888888
Q ss_pred ccC
Q 015939 336 CVY 338 (398)
Q Consensus 336 ~~~ 338 (398)
...
T Consensus 576 ~s~ 578 (1056)
T 1lsh_A 576 RSS 578 (1056)
T ss_dssp TCC
T ss_pred hcC
Confidence 753
No 216
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.70 E-value=9.9 Score=30.45 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=55.8
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhcc-----ccCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKL-----AEDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|..-|.+.++.++..|+.+|..+..+ ......|.. ..++..|+++++. ..++.++...+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 355666667788899999999999999888 455667766 7899999999974 2467889988888887753
No 217
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.01 E-value=7.6 Score=33.32 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=55.1
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS 250 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 250 (398)
++..|..-|.++++.++..|+.+|..+..+ ......|.. ..++..|++++++..+++++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 355666677788899999999999999888 345566766 7799999999987657788888888777664
No 218
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.22 E-value=8 Score=31.26 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred HHHHHHHHh-ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHH-HHHHHhh--cCcHHHHHHHHHHHHHHhc
Q 015939 309 AGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTK-LLLVMQS--ENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 309 v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~-Ll~~l~~--~~~~~~k~~A~~lL~~l~~ 381 (398)
+..|.+-|. ..++.++-.|+.+|..+..+.| .....++.....+.. |+.++.. .....+|+++..+++.-+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG-~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCG-HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 445677776 4788999999999999888755 677778888888888 7777743 2245899999988888776
No 219
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=72.44 E-value=11 Score=30.88 Aligned_cols=71 Identities=8% Similarity=0.183 Sum_probs=56.3
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhcc-----ccCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKL-----AEDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|..-|.++++.++..|+.+|..+..+ ......+.. ..++..|+++++. ..++.++..++..|..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356666777888899999999999999988 456667776 7899999999973 2367889999988887753
No 220
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.73 E-value=11 Score=30.16 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=56.2
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccc-----cCHHHHHHHHHHHHHhcC
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLA-----EDQALNDAILSILITLSV 251 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~ 251 (398)
++..|..-|.++++.++..|..+|..+..+ ......+.. ..++..|+++++.. .++.++..++..|..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 355666667788999999999999999988 456677776 78999999999741 367889988888887653
No 221
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=70.88 E-value=1.4 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=12.1
Q ss_pred CCCCcccccCcccc
Q 015939 9 AVPNLFRCPISLDV 22 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~ 22 (398)
++|+++.||+|+.-
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 68999999999864
No 222
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=68.67 E-value=0.38 Score=34.17 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=25.3
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
..||.|...|.- ..++.+|..|=.. +.. ...||.|+++|+
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~-~~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKD-FSL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCE-EEE-EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECcccccc-CCC-cccCcchhhHHH
Confidence 579999987652 3455557777332 222 227999988875
No 223
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=67.79 E-value=3.6 Score=36.05 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=17.4
Q ss_pred hhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHH
Q 015939 116 TGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR 155 (398)
Q Consensus 116 ~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~ 155 (398)
..++..|...+.. =....|..++++ ++..++..++.
T Consensus 61 d~~~~VR~~AA~~-l~~~~l~~L~~D---~~~~VR~~aA~ 96 (244)
T 1lrv_A 61 DPFWERRAIAVRY-SPVEALTPLIRD---SDEVVRRAVAY 96 (244)
T ss_dssp CSSHHHHHHHHTT-SCGGGGGGGTTC---SSHHHHHHHHT
T ss_pred CCCHHHHHHHHHh-CCHHHHHHHccC---cCHHHHHHHHH
Confidence 3455666666553 223333344443 44455565554
No 224
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=66.52 E-value=1.9 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=12.4
Q ss_pred CCCCcccccCcccc
Q 015939 9 AVPNLFRCPISLDV 22 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~ 22 (398)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 78999999999864
No 225
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=66.27 E-value=2.2 Score=27.55 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=12.6
Q ss_pred cCCCCcccccCcccc
Q 015939 8 IAVPNLFRCPISLDV 22 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~ 22 (398)
.++|+++.||+|+.-
T Consensus 31 ~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLPDDWACPVCGAS 45 (52)
T ss_dssp TSSCTTCCCSSSCCC
T ss_pred HHCCCCCcCCCCCCc
Confidence 368999999999864
No 226
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=64.90 E-value=1.5e+02 Score=31.71 Aligned_cols=208 Identities=12% Similarity=0.045 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-----hhhhhhhhhhcCCcHHHHHHHhhhcc
Q 015939 69 LHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATG-----CEANRRFLASYGGFVEAVFGVLNRKR 143 (398)
Q Consensus 69 l~~~i~~~~~~~p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-----~~~~r~~i~~~~g~v~~L~~lL~~~~ 143 (398)
.++....|.+..-.-++....+...|..+. +.+.+.-|+..|.+..+. +++.|..+.+ ..+..+...-.. +
T Consensus 44 ~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~-~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~-~ 119 (1073)
T 3gjx_A 44 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQ-NMNTKYYGLQILENVIKTRWKILPRNQCEGIKK--YVVGLIIKTSSD-P 119 (1073)
T ss_dssp HHHHHHHHHHTSSCCSCHHHHHTCC---CC-SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHTC-G
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH--HHHHHHHHHccC-c
Confidence 466667777543211123343334444332 234677788888876543 2334444443 233333333211 1
Q ss_pred ---CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-ch--------
Q 015939 144 ---RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NE-------- 211 (398)
Q Consensus 144 ---~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~-------- 211 (398)
..+..++.+...++..++..+-. -.=++.++-++..+.. +.........+|..|... .+
T Consensus 120 ~~~e~~~~vinKLa~~La~I~k~~~P--------~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~ 190 (1073)
T 3gjx_A 120 TCVEKEKVYIGKLNMILVQILKQEWP--------KHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQ 190 (1073)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHTT--------TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCH
T ss_pred cccccchHHHHHHHHHHHHHHHHhCh--------hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 11234455566666666542211 0013568888888764 345566677888877655 11
Q ss_pred -----hHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHH-HHHhcccCcchhhHHH
Q 015939 212 -----SKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQIL-TRILSDSRTQILTVEK 284 (398)
Q Consensus 212 -----~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~L-v~lL~~~~~~~~~~~~ 284 (398)
.+..+.. ...++..+..+|....++++...++.+|..+...-+. ..+++.+.++.| ..+| .++.++..
T Consensus 191 ~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L----~~~~~r~a 265 (1073)
T 3gjx_A 191 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFL----NVPMFRNV 265 (1073)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTS----SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhc----CChHHHHH
Confidence 1222222 1234444555565555788889999999999887653 346677888877 4666 36789999
Q ss_pred HHHHHHHHhC
Q 015939 285 SIKMLSIVAT 294 (398)
Q Consensus 285 al~~L~~La~ 294 (398)
|+.+|..+..
T Consensus 266 A~dcL~eIv~ 275 (1073)
T 3gjx_A 266 SLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 227
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=64.13 E-value=7.6 Score=28.47 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCcccccCccccCCCceecC-CCc-----ccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLC-TGV-----TYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~-~g~-----~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
++.+.|||++++-..=|-.. ++. -|+..++.+....|.+ =|.+|+++...
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~s 80 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITAS 80 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTT
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHh
Confidence 45678999999998888775 222 3889999999876543 48888887654
No 228
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=62.89 E-value=45 Score=28.83 Aligned_cols=144 Identities=9% Similarity=0.115 Sum_probs=90.6
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHH
Q 015939 181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQL 259 (398)
Q Consensus 181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~ 259 (398)
++....+.++...++|..|+.+|..+ . .. ...++.+...+....+-.++..++.++..++. ....+
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--------Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 44445555666789999999987766 2 11 34566666645555588899999999998875 22221
Q ss_pred HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc-CcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA-SCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~-g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
.++.+...+. +++..+++.|...+.--+..+ ....+. -.++.|-.+..+.+.=++..-...|-.+++..
T Consensus 140 ----~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 ----ALPIIDEWLK--SSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ----THHHHHHHHH--CSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHhc--CCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 5677777774 478888888887765422211 111111 12333333334467777888888898899864
Q ss_pred CChhHHHHHHh
Q 015939 339 KDARVKEAVVN 349 (398)
Q Consensus 339 ~~~~~~~~~~~ 349 (398)
++.+...++
T Consensus 210 --Pd~V~~~~~ 218 (240)
T 3l9t_A 210 --PDLVKIELK 218 (240)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 666665554
No 229
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=62.38 E-value=2.6 Score=27.21 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=12.3
Q ss_pred CCCCcccccCcccc
Q 015939 9 AVPNLFRCPISLDV 22 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~ 22 (398)
++|+++.||+|+.-
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 78999999999864
No 230
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=61.91 E-value=4.7 Score=29.26 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=34.5
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+-|-.|=.-.+. .+..+.|-+|+.|+...+.. ...||+|+++|...
T Consensus 29 ~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccChhhccccCC-eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 467777666663 34457899999999998864 55799999987643
No 231
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.30 E-value=19 Score=28.43 Aligned_cols=72 Identities=8% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcC--------cHHHHHHHHHHHHHHhc
Q 015939 310 GRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSEN--------EGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 310 ~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~--------~~~~k~~A~~lL~~l~~ 381 (398)
+.|.+-|.+.++.++-.|+.+|.-|+.+. ++.++..+.+.-.+-+-+.-.+-.. +..+|++|..++..|.+
T Consensus 52 ~~L~kRL~~k~~~vk~KaL~lL~yL~~~G-s~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 52 EFILKRLDNKSPIVKQKALRLIKYAVGKS-GSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCcceeehHHHHHHHHHHhC-CHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 45777888888999999999999999874 5777777766543222221111111 14799999999999988
Q ss_pred C
Q 015939 382 A 382 (398)
Q Consensus 382 ~ 382 (398)
.
T Consensus 131 ~ 131 (140)
T 1vdy_A 131 E 131 (140)
T ss_dssp C
T ss_pred c
Confidence 4
No 232
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=61.27 E-value=62 Score=34.75 Aligned_cols=186 Identities=11% Similarity=0.100 Sum_probs=104.5
Q ss_pred ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-----cc
Q 015939 180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-----RS 254 (398)
Q Consensus 180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-----~~ 254 (398)
.+..++..+.+++.+.|..|-..|..+-.++ +++..+..+|....++.++--|+..|.+.... ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 3555555566667777777777777766543 33444445555545788888899998887432 23
Q ss_pred hHHHHHHcCChHHHHHHhccc---CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939 255 VKAQLVELGMVQILTRILSDS---RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI 331 (398)
Q Consensus 255 ~~~~~v~~g~v~~Lv~lL~~~---~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L 331 (398)
..+..++...+..+...-.++ ..++.++.+...+|..++...-.. .=...++.++..+. .++...+..+.+|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~-~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASR-TSESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 333334444555555543221 124566677777777777532110 12456777777664 3556677888888
Q ss_pred HHhhccCCC-----------hhHHHHHHhcCCHHHHH----HHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939 332 WSMCCVYKD-----------ARVKEAVVNSNGLTKLL----LVMQSENEGIVRKMCGDLVKVLGKA 382 (398)
Q Consensus 332 ~~l~~~~~~-----------~~~~~~~~~~g~~~~Ll----~~l~~~~~~~~k~~A~~lL~~l~~~ 382 (398)
..|...-.+ .+.+..+... ++.++ ..|+...++.....+..+|+.+..|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW 237 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW 237 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 777643100 0122223221 33344 3444455677777777777777765
No 233
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=61.07 E-value=2.7 Score=27.46 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=12.9
Q ss_pred CCCCcccccCccccCC
Q 015939 9 AVPNLFRCPISLDVMK 24 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~ 24 (398)
++|+++.||+|+.-=.
T Consensus 32 ~lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 32 DIPADWVCPDCGVGKI 47 (55)
T ss_dssp GSCTTCCCTTTCCCGG
T ss_pred HCCCCCcCCCCCCCHH
Confidence 5899999999986433
No 234
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.53 E-value=5.2 Score=30.69 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=38.0
Q ss_pred cccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939 13 LFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62 (398)
Q Consensus 13 ~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~ 62 (398)
-|.|..|...+.| +....-|.-||+.|..+-+.. ...|..|++++....
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 4899999999973 566678999999999887742 236999988877543
No 235
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=59.46 E-value=3.2 Score=29.45 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=15.0
Q ss_pred cCCCCcccccCccccCCCce
Q 015939 8 IAVPNLFRCPISLDVMKSPV 27 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv 27 (398)
.++|+++.||+|+.-=.+..
T Consensus 55 edlPddW~CPvCga~K~~F~ 74 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAAKSDFE 74 (81)
T ss_dssp TTSCTTCCCTTTCCCGGGEE
T ss_pred hHCCCCCcCCCCCCCHHHcE
Confidence 36899999999987544443
No 236
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.03 E-value=2.1e+02 Score=31.03 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc--
Q 015939 87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN-- 164 (398)
Q Consensus 87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~-- 164 (398)
+..++..+.+++.+.+.+.+|-..|..+-.. + ++...+...|.+ ...+..++.-|+..|.+.....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p----------~~~~~~~~~L~~-~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-C----------PICVPCGLRLAE-KTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C----------TTHHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-c----------hHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555533323466777777666432 2 223333333332 2234556677777777765321
Q ss_pred chHHHhhHhhhccCCChHHHHHHHhc-------CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHH
Q 015939 165 GVKEKLNRLILNTYNCLPLFLEILRE-------GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQA 237 (398)
Q Consensus 165 ~~~~~~~~~il~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 237 (398)
.-.++.|.. + =..+++.+.+ .+..++...+.++..++..+.- ..=.++++.|+.++++ ++.
T Consensus 81 ~l~~e~k~~-I-----r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~--~~~ 148 (1204)
T 3a6p_A 81 GMSRLEKVY-L-----KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ--GET 148 (1204)
T ss_dssp GSCHHHHHH-H-----HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT--CHH
T ss_pred cCCHHHHHH-H-----HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC--CHH
Confidence 001111222 1 2233444432 3577788888889888776321 1115688888888866 345
Q ss_pred HHHHHHHHHHHhcCC---c----chHH-----HHHHc--CChHHHHHHhccc-----------------CcchhhHHHHH
Q 015939 238 LNDAILSILITLSVY---R----SVKA-----QLVEL--GMVQILTRILSDS-----------------RTQILTVEKSI 286 (398)
Q Consensus 238 ~~~~a~~aL~~Ls~~---~----~~~~-----~~v~~--g~v~~Lv~lL~~~-----------------~~~~~~~~~al 286 (398)
....++.+|..|+.. . ..+. .+.+. .++..+..++... ..+..++..++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 677888888888532 1 1111 12211 1223333344210 01234555666
Q ss_pred HHHHHHhCCHHHHHHHhhcc-CcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939 287 KMLSIVATCSEGRLALSEEA-SCAGRVVERVMKVGKTAREDAVVVIWSMCCVY 338 (398)
Q Consensus 287 ~~L~~La~~~~~~~~i~~~~-g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~ 338 (398)
.++.+....- ....+.+.. ..++.+..++ .++..+..|+.+|..+....
T Consensus 229 ~~l~~~l~Wi-~~~~i~~~~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWV-SMSHITAENCKLLEILCLLL--NEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTS-CHHHHHTTTSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcc-CHHHHHhccchHHHHHHHHc--CCHHHHHHHHHHHHHHHhCC
Confidence 6665544311 112222221 1444444333 46888999999999998754
No 237
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=56.91 E-value=3.5 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=15.5
Q ss_pred cCCCCcccccCccccCCCcee
Q 015939 8 IAVPNLFRCPISLDVMKSPVS 28 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~ 28 (398)
.++|+++.||+|+.-=.+...
T Consensus 35 ~~lPddw~CP~Cga~K~~F~~ 55 (70)
T 1dx8_A 35 VDLSDSFMCPACRSPKNQFKS 55 (70)
T ss_dssp GGSCTTCBCTTTCCBGGGEEE
T ss_pred hhCCCCCcCCCCCCCHHHceE
Confidence 368999999999875444433
No 238
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=56.63 E-value=7.8 Score=29.72 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=37.4
Q ss_pred CcccccCccccCCC-ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKS-PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+-|.|..|+..+.+ +....-|.-||+.+..+-+ .+.|+.|++++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCcC
Confidence 45899999999887 6667789999999987654 45799999888753
No 239
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=54.10 E-value=8.5 Score=28.43 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.1
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhc
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES 46 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~ 46 (398)
..+.||+|++.+..+-+.+- ..-|..|+.|...
T Consensus 62 ~~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 62 NSPTDPFNRQTLTESMLEPV--PELKEQIQAWMRE 94 (100)
T ss_dssp SCSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCCChhhceEC--HHHHHHHHHHHHH
Confidence 35789999999998766663 3568899999864
No 240
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.47 E-value=5 Score=29.37 Aligned_cols=11 Identities=18% Similarity=0.800 Sum_probs=10.3
Q ss_pred cchhHHHHHHh
Q 015939 35 YDRSSIQHWLE 45 (398)
Q Consensus 35 ~~r~~i~~~~~ 45 (398)
|||.|+.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 241
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.19 E-value=5.1 Score=29.28 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=10.3
Q ss_pred cchhHHHHHHh
Q 015939 35 YDRSSIQHWLE 45 (398)
Q Consensus 35 ~~r~~i~~~~~ 45 (398)
|||.|+.+|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 242
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=53.04 E-value=4.5 Score=29.11 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=14.0
Q ss_pred cCCCCcccccCccccCCC
Q 015939 8 IAVPNLFRCPISLDVMKS 25 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~d 25 (398)
.++|+++.||+|+.-=.+
T Consensus 63 edlPddW~CPvCga~K~~ 80 (87)
T 1s24_A 63 EDIPDDWCCPDCGATKED 80 (87)
T ss_dssp GGCCTTCCCSSSCCCGGG
T ss_pred hHCCCCCCCCCCCCCHHH
Confidence 478999999999865433
No 243
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=52.86 E-value=2.5e+02 Score=30.40 Aligned_cols=214 Identities=12% Similarity=0.070 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhh---CCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-----hhhhhhhhhhcCCcHHHHHHH
Q 015939 67 LTLHRLIAHWSHQ---LTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATG-----CEANRRFLASYGGFVEAVFGV 138 (398)
Q Consensus 67 ~~l~~~i~~~~~~---~p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-----~~~~r~~i~~~~g~v~~L~~l 138 (398)
...++.+..|.+. .|. ....+...|.+.+.+.+.+.-|+..|++..+. +++.|..+.+ .|+..
T Consensus 27 ~~~r~~Ae~~L~~~~~~p~---~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~------~ll~~ 97 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEKCP---ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN------SVMEL 97 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCT---THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH------HHHHH
T ss_pred hHHHHHHHHHHHHHHhCch---HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH------HHHHH
Confidence 3345555555532 332 23333444432222334677777777776543 2344444443 34444
Q ss_pred hhhcc----CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c---
Q 015939 139 LNRKR----RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-N--- 210 (398)
Q Consensus 139 L~~~~----~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~--- 210 (398)
+.+.. +....++.....++..++..+-. -.=.+.++.|++++++ +...++.+..+|..|..+ .
T Consensus 98 l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p--------~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 98 IANGTLNILEEENHIKDALSRIVVEMIKREWP--------QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST--------TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhCc--------ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 44311 12345556667777777653211 0124678999988876 455677788888888654 1
Q ss_pred ---hhH-----HHhhc-hhhHHHHHHHHhccc------------------cCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 015939 211 ---ESK-----RRVLE-TENLLSALFDYLKLA------------------EDQALNDAILSILITLSVYRSVKAQLVELG 263 (398)
Q Consensus 211 ---~~~-----~~i~~-~~g~i~~Lv~lL~~~------------------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g 263 (398)
..+ ..+.. ...++..+..+|.+. .+..+...++.++.+....-+.. .+++..
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~-~i~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS-HITAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH-HHHhcc
Confidence 111 11211 123444455555431 13446677788887665543322 222322
Q ss_pred --ChHHHHHHhcccCcchhhHHHHHHHHHHHhCC---HHHHHHHh
Q 015939 264 --MVQILTRILSDSRTQILTVEKSIKMLSIVATC---SEGRLALS 303 (398)
Q Consensus 264 --~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~---~~~~~~i~ 303 (398)
.++.+..++ .+++++..|+.+|..+... ++.+..+.
T Consensus 248 ~~ll~~l~~~l----~~~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 248 CKLLEILCLLL----NEQELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp SHHHHHHHHGG----GCTTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred chHHHHHHHHc----CCHHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 566666665 3678899999999999862 45554444
No 244
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.37 E-value=88 Score=24.94 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHH-HHHHhhhccCCcHHHHHHHHHHHHh
Q 015939 83 PEQEVRVWIEKIKS-ENESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEA-VFGVLNRKRRSEIAVLESAVRVLNL 159 (398)
Q Consensus 83 p~~~i~~l~~~l~~-~~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~-L~~lL~~~~~~~~~~~~~al~~L~~ 159 (398)
|.+.+..+.++|++ .+.. .+..|+..|..+.+.. ..-...+++- .++.- |+.++....+....+.+.++..+..
T Consensus 51 ~k~a~ral~krl~~~~n~~--v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFH--EVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHH--HHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHH--HHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 35677788888974 4443 6788998888888774 5556667766 78887 7888854233445677888887765
Q ss_pred hh
Q 015939 160 IV 161 (398)
Q Consensus 160 l~ 161 (398)
-+
T Consensus 128 W~ 129 (157)
T 1elk_A 128 WA 129 (157)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 245
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.98 E-value=21 Score=31.31 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=84.0
Q ss_pred HHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHH-HHHhcCChhhHHHHHHHHHHhhcCch
Q 015939 133 EAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFL-EILREGNLDSKIGSIKILDSISLDNE 211 (398)
Q Consensus 133 ~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~L~~~~~ 211 (398)
..+..++.+++ . +--++..++.+..+.... +.+..++ ..++++++..+.-+++++.|+..++.
T Consensus 59 ~~~~ki~~~WP--~---~fP~lDllRl~~~~~~~~-----------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~ 122 (253)
T 3gae_A 59 SFANTIRSNWE--I---KTPAYDIVRLIVKKLPYS-----------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNEN 122 (253)
T ss_dssp HHHHHHHHHCS--C---CHHHHHHHHHHGGGCSCG-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhCC--c---cchHHHHHHHHHcCCchH-----------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCc
Confidence 34456666644 1 245777777666554431 1222222 22334467788899999999999987
Q ss_pred -hHHHhhchhhHHHHHHHHhccc-------cCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcc----c---
Q 015939 212 -SKRRVLETENLLSALFDYLKLA-------EDQALNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSD----S--- 275 (398)
Q Consensus 212 -~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~----~--- 275 (398)
.+..+.. +.....++..+.+. .+..++-+++.+++|++...- .+. +......+++++.. .
T Consensus 123 ~g~~l~~~-~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~ 198 (253)
T 3gae_A 123 WGVKLLES-NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEY 198 (253)
T ss_dssp THHHHHTS-HHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHH
T ss_pred hHHHHHhc-chhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccc
Confidence 5666655 44455556554221 255688899999999975321 110 12233445555531 1
Q ss_pred CcchhhHHHHHHHHHHHhC
Q 015939 276 RTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 276 ~~~~~~~~~al~~L~~La~ 294 (398)
..+++..-.++.+|.+|..
T Consensus 199 ~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 199 QECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 1367788888888888875
No 246
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.81 E-value=2.9e+02 Score=30.25 Aligned_cols=230 Identities=11% Similarity=0.070 Sum_probs=120.6
Q ss_pred cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-----cCCChHHHHHHHhcC-ChhhHHHHHHHHH
Q 015939 131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-----TYNCLPLFLEILREG-NLDSKIGSIKILD 204 (398)
Q Consensus 131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-----~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 204 (398)
++..|..+|.. . . ...-..+.+|.+|..+++..++.|..++. ....+|.++++|=.. +.+-...++..|+
T Consensus 193 v~~~L~~lL~~-~-~--~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR 268 (1323)
T 3s4w_B 193 VGKELGELLVQ-N-T--SLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELR 268 (1323)
T ss_dssp HHHHHHHHHHH-C-S--TTHHHHHHHHHHSCCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-c--chHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHH
Confidence 34556777766 2 2 24477888999998888777777766544 345699999988533 4443334555555
Q ss_pred HhhcC-c--------hh------HH-------HhhchhhHHHHHHHHhccc--cCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939 205 SISLD-N--------ES------KR-------RVLETENLLSALFDYLKLA--EDQALNDAILSILITLSVYRSVKAQLV 260 (398)
Q Consensus 205 ~L~~~-~--------~~------~~-------~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls~~~~~~~~~v 260 (398)
.-... . .. +. .-.........+++.++++ -+..+.++-++++.++....+
T Consensus 269 ~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~------ 342 (1323)
T 3s4w_B 269 ENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE------ 342 (1323)
T ss_dssp HHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT------
T ss_pred HHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc------
Confidence 31111 0 00 00 0000011233356666654 245677777888888765433
Q ss_pred HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHH-----------HHhhccCcHHHHHHHH----hccChhHHH
Q 015939 261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRL-----------ALSEEASCAGRVVERV----MKVGKTARE 325 (398)
Q Consensus 261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~-----------~i~~~~g~v~~Lv~~l----~~~~~~~~~ 325 (398)
.-.++.++-++-. +.....+..+-.++++......-.. .+. ....+.++.+. .+.++.+++
T Consensus 343 -hk~~Dl~vLlii~-s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL--~~~f~siL~La~~Ll~S~~~~v~~ 418 (1323)
T 3s4w_B 343 -HKSLDVVMLLIIY-STSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL--KDICPSILLLAQTLFHSQDQRIIL 418 (1323)
T ss_dssp -CCTHHHHHHHHHH-HHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHTSSSHHHHH
T ss_pred -cchhHHHHHHHHH-cCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2456665544421 1234456777777777665432222 222 14455555443 336677776
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
.+...-..+-... +...+++ ++..|+..+-++.+.+ ...|..+|..+..
T Consensus 419 Fg~~lY~~lF~~f-d~~~qqe-----Vl~~Lv~hi~sg~~~e-Vd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 419 FGSLLYKYAFKFF-DTYCQQE-----VVGALVTHVCSGTEAE-VDTALDVLLELIV 467 (1323)
T ss_dssp HHHHHHHHHHHSS-CHHHHHH-----HHHHHHHHHHHCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cchhHHH-----HHHHHHhhhcCCCcHH-HHHHHHHHHHHHh
Confidence 6665443333322 2333444 4445666555553333 4456666665553
No 247
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.40 E-value=63 Score=30.55 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=66.3
Q ss_pred cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc-------ccCHHHHHHHHHHHHHhcCCcch-HHHHHH
Q 015939 190 EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL-------AEDQALNDAILSILITLSVYRSV-KAQLVE 261 (398)
Q Consensus 190 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~~a~~aL~~Ls~~~~~-~~~~v~ 261 (398)
+.++..+.-++++|.|+..++.....+..+......++..+.. ..+..++.+++.+++|++...-. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4467788889999999999987544444424455666665531 12456888999999999763211 10 1
Q ss_pred cCChHHHHHHhcc-------cCcchhhHHHHHHHHHHHhC
Q 015939 262 LGMVQILTRILSD-------SRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 262 ~g~v~~Lv~lL~~-------~~~~~~~~~~al~~L~~La~ 294 (398)
...+..+++++.. ...+++..-.++.+|.+|..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2233455665531 02478889999999999986
No 248
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=47.06 E-value=13 Score=28.68 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=37.1
Q ss_pred CcccccCccccCC---CceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 12 NLFRCPISLDVMK---SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 12 ~~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
+-|.|..|...+. .+....-|.-||+.+..+-+.. ...|+.|++++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 5589999999996 3677778999999998887632 2268888887764
No 249
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=46.76 E-value=1.8e+02 Score=27.00 Aligned_cols=150 Identities=10% Similarity=0.079 Sum_probs=90.4
Q ss_pred CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh--------
Q 015939 178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL-------- 249 (398)
Q Consensus 178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L-------- 249 (398)
.++++.++++-...+.++|.-.+.+|...+..+ ..+ ...+++.|..+|.+. ++.+.+.++.+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el--~~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IEL--LLKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG--HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888889999998888888766421 111 145678888888876 888887766654444
Q ss_pred cCCcc-------hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh--CCH---HH-------------------
Q 015939 250 SVYRS-------VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA--TCS---EG------------------- 298 (398)
Q Consensus 250 s~~~~-------~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La--~~~---~~------------------- 298 (398)
+.++. ....|.. .-..++.++. +.+..++-.|++.+..+. ..+ ..
T Consensus 136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~d--s~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nH 211 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSA--MAGDIILLLD--SDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDH 211 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHH--HHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTC
T ss_pred hcCCCcchhHHHHHHHHHH--HHHHHHHHhc--cCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCC
Confidence 22221 1222221 2334555563 367788888888887754 110 00
Q ss_pred ----HHHH-hhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhcc
Q 015939 299 ----RLAL-SEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 299 ----~~~i-~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~ 337 (398)
...+ .+..+.+..|++.+.. .++..--..+..|..|++.
T Consensus 212 p~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~ 257 (386)
T 3o2t_A 212 PYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ 257 (386)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh
Confidence 1112 1123567777777765 2343444567777777765
No 250
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.28 E-value=27 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCcccccCccccCCCc--eecC--CCcccchhHHHHHHhc----CCCCCCcc
Q 015939 11 PNLFRCPISLDVMKSP--VSLC--TGVTYDRSSIQHWLES----GHDTCPAT 54 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dP--v~~~--~g~~~~r~~i~~~~~~----~~~~CP~~ 54 (398)
-..++|.+|.+-++|- |.-| .+|.||=-|-...++. +.-+||.-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 4567899999999885 3333 5899997777766642 23467763
No 251
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=43.37 E-value=26 Score=23.88 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=33.1
Q ss_pred CcccccCccccCCC-ceecCCCcccch-hHHHHHHhcCCCCCCcccccC
Q 015939 12 NLFRCPISLDVMKS-PVSLCTGVTYDR-SSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d-Pv~~~~g~~~~r-~~i~~~~~~~~~~CP~~~~~l 58 (398)
+-|.|..|...+.+ +....-|.-||+ .+..+-+ .+.|..|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 45899999999887 666678999999 5877654 34577776554
No 252
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=41.84 E-value=13 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=24.9
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhc
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES 46 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~ 46 (398)
...||+|++.+...-+.+ . ..-|..|++|...
T Consensus 57 ~~~cP~~~~~l~~~~L~p-n-~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRP-N-TELKEKIQRWLAE 88 (98)
T ss_dssp SCBCTTTCSBCCTTTSEE-C-HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhhceE-c-HHHHHHHHHHHHH
Confidence 568999999998775555 3 3568899999864
No 253
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=40.47 E-value=12 Score=23.42 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=22.9
Q ss_pred cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|.|++|+..|...-.+. .| +..........||.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhC
Confidence 578999888887664332 11 12222222346999987654
No 254
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.18 E-value=35 Score=31.55 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred HHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHH-HHHhcCChhhHHHHHHHHHHhhcCchhHH
Q 015939 136 FGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFL-EILREGNLDSKIGSIKILDSISLDNESKR 214 (398)
Q Consensus 136 ~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 214 (398)
..++.+++. +--++.+|+.+..+... .+.+..++ ..+.+.++..+.-+++++.|+-.++....
T Consensus 171 ~~i~~~Wp~-----~FP~LDLLRl~v~~~~~-----------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~ 234 (362)
T 3l3f_X 171 NTIRSNWEI-----KTPAYDIVRLIVKKLPY-----------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGV 234 (362)
T ss_dssp HHHHHHCSC-----CHHHHHHHHHHGGGCSC-----------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHhhCCc-----cchHHHHHHHHhcCCCh-----------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHH
Confidence 366666442 24577777766654432 12222233 22334467788889999999999987544
Q ss_pred HhhchhhHHHHHHHHhc----cc---cCHHHHHHHHHHHHHhcCCcch-HHHHHHcCChHHHHHHhcc----c---Ccch
Q 015939 215 RVLETENLLSALFDYLK----LA---EDQALNDAILSILITLSVYRSV-KAQLVELGMVQILTRILSD----S---RTQI 279 (398)
Q Consensus 215 ~i~~~~g~i~~Lv~lL~----~~---~~~~~~~~a~~aL~~Ls~~~~~-~~~~v~~g~v~~Lv~lL~~----~---~~~~ 279 (398)
.+..+......++..+. +. .+..++.+++.+++|++...-. +. +...+..+++++.. . ..++
T Consensus 235 ~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~ 311 (362)
T 3l3f_X 235 KLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECE 311 (362)
T ss_dssp HHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSH
T ss_pred HHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCH
Confidence 44432333445555442 11 2456888999999999763211 10 12233456666541 1 2478
Q ss_pred hhHHHHHHHHHHHhC
Q 015939 280 LTVEKSIKMLSIVAT 294 (398)
Q Consensus 280 ~~~~~al~~L~~La~ 294 (398)
+..-.++.+|.+|..
T Consensus 312 EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 312 EAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999999986
No 255
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.86 E-value=28 Score=28.51 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=33.0
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+-|.|..|...+.+--...-|.-||+.|..+-+ .+.|..|++++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 457888888888764444568889988876544 35688888776654
No 256
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=38.52 E-value=2e+02 Score=25.03 Aligned_cols=105 Identities=9% Similarity=0.108 Sum_probs=63.9
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh--------c
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL--------S 250 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L--------s 250 (398)
.+++.++.+-...+.++|.-.+..|...+..+ ..+ ....++.|..+|++. ++.+.+.+..+..++ +
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~l--~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VEL--LPHVINVVSMLLRDN-SAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGG--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666555667888888888888776331 222 245788888888876 888888777654444 3
Q ss_pred CCcc-------hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939 251 VYRS-------VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA 293 (398)
Q Consensus 251 ~~~~-------~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La 293 (398)
.++. ....|.. .=..++.++. +.+..++-.|++.+..+-
T Consensus 127 ~~~~~~~~~~~~W~~m~~--lK~~Il~~~~--s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSL--IKAQILDMID--NENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHHH--HHHHHHHGGG--SSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHH--HHHHHHHHHc--cCCcchHHHHHHHHHHHH
Confidence 3322 1222221 2334555553 356777777777777643
No 257
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=36.33 E-value=15 Score=24.08 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=24.2
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.-|.|++|+..|..+-.|. -| ......+....|+.|+..+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-~H------~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-RH------RRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-HH------HHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHH-HH------HHHhCCCcCeECCCCCCCcCC
Confidence 3478988888877664333 11 111222223469999877653
No 258
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.26 E-value=9.4 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=6.6
Q ss_pred ccccCccccC
Q 015939 14 FRCPISLDVM 23 (398)
Q Consensus 14 ~~Cpi~~~~~ 23 (398)
..||+|.+.|
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 3577777766
No 259
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=36.15 E-value=88 Score=26.11 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=66.0
Q ss_pred CChHHHHHHHhcC------ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHHHHHHhc
Q 015939 179 NCLPLFLEILREG------NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA--EDQALNDAILSILITLS 250 (398)
Q Consensus 179 g~i~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls 250 (398)
..+|.++.++.++ +.........+...|..|+.....--- +..+|+++.++-.. ....++.-|+..|..++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 4577777666432 556666777888888888654332222 56888888776443 12268999999999997
Q ss_pred CCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939 251 VYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA 293 (398)
Q Consensus 251 ~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La 293 (398)
..-.+...-...-.+..+.+.+.++..+....-=|+..|..|-
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 5322111112223556677777543333344444444444443
No 260
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.96 E-value=9.3 Score=31.77 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=37.8
Q ss_pred CcccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+-|.|..|...+.+ +....-|.-||+.|..+-+.. ...|+.|++++...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccC
Confidence 45899999999885 777778999999998876631 12699998887643
No 261
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=35.82 E-value=2.7e+02 Score=26.74 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=73.8
Q ss_pred CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccC-HH-HHHHHHHHHHHhcCCcchH
Q 015939 179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAED-QA-LNDAILSILITLSVYRSVK 256 (398)
Q Consensus 179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~-~~~~a~~aL~~Ls~~~~~~ 256 (398)
=-+..++.-|.+++..+...|+.+|. ...-+..+.. .+.+..|+.++-+.+. .. +..+.=.++..|+++.=.+
T Consensus 116 ysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~-t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLir 190 (500)
T 3vld_A 116 YSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFAT-SNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIR 190 (500)
T ss_dssp SCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTT-SSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhcc-ChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHH
Confidence 45788889999998888888888887 4556677766 8999999999987622 23 5666666677776665567
Q ss_pred HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939 257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294 (398)
Q Consensus 257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~ 294 (398)
+++.+. ..|.|..+=. ..++-+..+-+..|.-+..
T Consensus 191 rril~n-nl~lL~~vK~--~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 191 RRLFDN-NLPYLVSVKG--RMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HHHHTT-THHHHHHHHH--HCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-hHHHHHHHhc--CCCceeHHHHHHHHHHHhc
Confidence 776653 5555555442 2455555566666666643
No 262
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=35.49 E-value=47 Score=26.75 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=34.9
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+-|.|..|...+.+--...-|.-||..+..+-+. ..|..|++++...
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 4589999999887754456799999998877653 4677777766544
No 263
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.30 E-value=20 Score=26.06 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=34.9
Q ss_pred CcccccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
+=|.|..|...+.+. ....-|..||+.+..+- -.+.|..|++++.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCccccC
Confidence 448899999988764 45567999998886443 346799999888743
No 264
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.94 E-value=24 Score=24.00 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=18.1
Q ss_pred cccccCccccCC--CceecCCCcccchhHHHHHH
Q 015939 13 LFRCPISLDVMK--SPVSLCTGVTYDRSSIQHWL 44 (398)
Q Consensus 13 ~~~Cpi~~~~~~--dPv~~~~g~~~~r~~i~~~~ 44 (398)
=|.|..|...+. ++....-|.-||+.|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp TSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 356666666664 34444455666666655544
No 265
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.61 E-value=6.3 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=22.7
Q ss_pred cccccC--ccccCC-----Cceec------CCCcccchhHHHHH
Q 015939 13 LFRCPI--SLDVMK-----SPVSL------CTGVTYDRSSIQHW 43 (398)
Q Consensus 13 ~~~Cpi--~~~~~~-----dPv~~------~~g~~~~r~~i~~~ 43 (398)
-..||- |...+. .+|+= .||+.||..|-+.|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 457988 887763 23443 58999999998877
No 266
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=34.53 E-value=23 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.4
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|..+
T Consensus 9 k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK 23 (45)
T ss_dssp CSSEETTTTEECSCH
T ss_pred CCCcCCCCCcccCCH
Confidence 357888887776653
No 267
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.56 E-value=20 Score=22.28 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHh-----cCCCCCCcccccCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE-----SGHDTCPATMQILS 59 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-----~~~~~CP~~~~~l~ 59 (398)
...|.|++|...|..+ ..+.++.. +....|+.|+..+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4568899988777653 33444432 12347999988764
No 268
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=33.03 E-value=2.4e+02 Score=24.30 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhc-c
Q 015939 85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVN-E 163 (398)
Q Consensus 85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~-~ 163 (398)
+.+..+...|-.++.. +.+.-|+..|..+ .. .. ..++.+...+. .+..=.+++.+..++..++. .
T Consensus 70 ~~~~~la~~L~~~~~d-eVR~~Av~lLg~~-~~---------~~-~~L~~ir~~va--~D~~WrVre~lA~a~~~~~~~~ 135 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVY-QVRMYAVFLFGYL-SK---------DK-EILIFMRDEVS--KDNNWRVQEVLAKAFDEFCKKI 135 (240)
T ss_dssp HHHHHHHHHHHTCSSH-HHHHHHHHHHHHT-TT---------SH-HHHHHHHHTGG--GCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcch-HHHHHHHHHHHhc-cC---------cH-HHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHhc
Confidence 3444555566554432 3566666655544 20 01 23333343232 24445677887777776663 2
Q ss_pred cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939 164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL 243 (398)
Q Consensus 164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~ 243 (398)
++ ...++.+...+.+.+..+|..|...++--+..+. .... ...+-+++.-|.+..+.-++++..
T Consensus 136 ~p------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~d-p~~ll~iL~~L~~D~s~yVrKSVa 199 (240)
T 3l9t_A 136 EY------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKEN-PNEAIRRIADLKEDVSEYVRKSVG 199 (240)
T ss_dssp CT------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTC-HHHHHHHHHTTTTCSCHHHHHHHH
T ss_pred CH------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcC-HHHHHHHHHHhcCChHHHHHHHHH
Confidence 11 1257788889999999999888777654332211 1122 344444555444444888999999
Q ss_pred HHHHHhcCCc-chHHHHHH
Q 015939 244 SILITLSVYR-SVKAQLVE 261 (398)
Q Consensus 244 ~aL~~Ls~~~-~~~~~~v~ 261 (398)
+.|..++..+ +-...+++
T Consensus 200 n~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 200 NALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhCHHHHHHHHH
Confidence 9999999765 44444443
No 269
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.35 E-value=38 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=14.1
Q ss_pred cccCccccCCCceecCCCcccchh
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDRS 38 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r~ 38 (398)
.|+-|.+...+.++..-|..|-+.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~ 50 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPE 50 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTT
T ss_pred CCccCCCEecceEEEECCcccccc
Confidence 466666666666665555555543
No 270
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.33 E-value=40 Score=22.34 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=19.1
Q ss_pred cccccCccccCCC-ceecCCCcccchhHHHHHH
Q 015939 13 LFRCPISLDVMKS-PVSLCTGVTYDRSSIQHWL 44 (398)
Q Consensus 13 ~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~ 44 (398)
=|.|..|...+.+ +....-|.-||+.+..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 3667777666644 4444556677776665544
No 271
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.29 E-value=15 Score=24.16 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=25.1
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
..|.|++|+..|...-.+.- .....|+.|+..+...
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 45899999999887766553 2345688887776543
No 272
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.11 E-value=8.3 Score=27.60 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=17.5
Q ss_pred cccCccccCCC-----ceecC-CCcccchhHHHHH
Q 015939 15 RCPISLDVMKS-----PVSLC-TGVTYDRSSIQHW 43 (398)
Q Consensus 15 ~Cpi~~~~~~d-----Pv~~~-~g~~~~r~~i~~~ 43 (398)
.||-|..+|.. +|+=+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49988775531 24443 6777766665555
No 273
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.68 E-value=31 Score=24.76 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=20.6
Q ss_pred cccccCccccC-CCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 13 LFRCPISLDVM-KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 13 ~~~Cpi~~~~~-~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
.|.|+.|+..| ...-.+. .-+... .+....|+.|+..+..
T Consensus 34 ~~~C~~C~k~F~~~~~~L~-------~H~~~h-~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLK-------KHMENC-KQEMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSHHHHH-------HHHHHH-CCCCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCcccCHHHHH-------HHHHHH-CCCCeECCCCCCeeCC
Confidence 36777766665 4432221 111222 2334579999876543
No 274
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.68 E-value=43 Score=22.21 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=7.4
Q ss_pred ccCccccCCCceecCCC
Q 015939 16 CPISLDVMKSPVSLCTG 32 (398)
Q Consensus 16 Cpi~~~~~~dPv~~~~g 32 (398)
|+-|.+...+.++..-|
T Consensus 8 C~~C~~~I~~~~~~a~~ 24 (70)
T 2d8x_A 8 CHQCGEFIIGRVIKAMN 24 (70)
T ss_dssp CSSSCCBCCSCCEEETT
T ss_pred CccCCCEecceEEEECc
Confidence 44444444444433333
No 275
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.58 E-value=15 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=21.2
Q ss_pred ccccCccccCCCceecCCCcccchhHHHHHHh----cCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE----SGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~----~~~~~CP~~~~~l~ 59 (398)
|.|++|+..|..+-.+ ..... .....|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~~l-----------~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSML-----------KKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHH-----------HHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHH-----------HHHHHhcCCCCCccCCCCCchhc
Confidence 6788888877765333 33322 12346999987654
No 276
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.35 E-value=9.7 Score=30.93 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=16.2
Q ss_pred cCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 29 LCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 29 ~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
..|||.|+.. .....||.|+.++.
T Consensus 136 ~~Cg~~~~~~-------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 136 IGCGRKFSTL-------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSSCCEESSC-------CGGGBCTTTCCBEE
T ss_pred CCCCCcccCC-------CCCCcCCCCCCcce
Confidence 4588888754 11347999997754
No 277
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=31.02 E-value=37 Score=27.13 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=49.5
Q ss_pred cHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHH-HHHHHhhc--CcHHHHHHHHHHHHHHhc
Q 015939 308 CAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTK-LLLVMQSE--NEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 308 ~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~-Ll~~l~~~--~~~~~k~~A~~lL~~l~~ 381 (398)
++..|.+-|.. .++.++..|+.+|..+..+.| .....++.....+.. |+.++... ....+|++...+++..+.
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG-~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCG-PSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcC-HHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 34456666664 477788889999988887655 566666665555543 55555432 234799999999988887
No 278
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.62 E-value=18 Score=18.35 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=7.0
Q ss_pred ccccCccccCCC
Q 015939 14 FRCPISLDVMKS 25 (398)
Q Consensus 14 ~~Cpi~~~~~~d 25 (398)
|.|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 556666665554
No 279
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.18 E-value=15 Score=24.48 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=23.3
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
...|.|++|...|..+-.+. -| +..........|+.|...+.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~-~H------~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILV-QH------QRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHH-HH------HHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHH-HH------HHhcCCCCCeECCCCCcccC
Confidence 35688999888776554332 11 11111122346999987654
No 280
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.46 E-value=19 Score=19.86 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=10.6
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|+.|+..|..+
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 347888887777654
No 281
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.37 E-value=18 Score=18.01 Aligned_cols=13 Identities=8% Similarity=0.411 Sum_probs=7.6
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|++|+..|..+
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 4566666655543
No 282
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.36 E-value=16 Score=18.34 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=8.3
Q ss_pred cccccCccccCCCc
Q 015939 13 LFRCPISLDVMKSP 26 (398)
Q Consensus 13 ~~~Cpi~~~~~~dP 26 (398)
.|.|+.|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 35677666665543
No 283
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.31 E-value=21 Score=18.10 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=8.2
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|+.|+..|..+
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 5677776666554
No 284
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.22 E-value=69 Score=21.24 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=19.8
Q ss_pred ccccCccccCCC-ceecCCCcccchhHHHHHHh
Q 015939 14 FRCPISLDVMKS-PVSLCTGVTYDRSSIQHWLE 45 (398)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~~ 45 (398)
|.|..|...+.+ +....-|.-||+.|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 667777666644 24445566777777666654
No 285
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.99 E-value=17 Score=18.59 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=8.8
Q ss_pred cccccCccccCCCc
Q 015939 13 LFRCPISLDVMKSP 26 (398)
Q Consensus 13 ~~~Cpi~~~~~~dP 26 (398)
.|.|+.|+..|..+
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 46677776666554
No 286
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=28.92 E-value=4e+02 Score=25.62 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=88.1
Q ss_pred ChHHHHHHH-hcC-----ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939 180 CLPLFLEIL-REG-----NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR 253 (398)
Q Consensus 180 ~i~~Lv~lL-~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 253 (398)
.++.+-++| +++ |++. ...++..+...-.....+ + .=-++.++.-|.++ .+.+...++.++. ..
T Consensus 74 ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VL-e-vysve~i~~aL~S~-~~~l~~~~ckVI~----~s 143 (500)
T 3vld_A 74 LLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVL-E-VYSAEDLVKALRSE-IDPLKVAACRVIE----NS 143 (500)
T ss_dssp HHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHH-H-HSCHHHHHHHHTSS-CHHHHHHHHHHHH----TC
T ss_pred HHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHH-H-hCCHHHHHHHHhcC-ChHHHHHHHHHhc----cc
Confidence 355666666 331 2333 445555444432222222 1 12367788888888 7889999999988 34
Q ss_pred chHHHHHHcCChHHHHHHhcccCcchh-hHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939 254 SVKAQLVELGMVQILTRILSDSRTQIL-TVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW 332 (398)
Q Consensus 254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~ 332 (398)
.-+.-++..+.+..|++++-+.+..-. ++...=.++..|++++=.|+.+.+ ...+.+..+=...++.....-+..+.
T Consensus 144 ~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~--nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 144 QPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFD--NNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp SSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHH--HhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 455566788999999999954333334 777777777888887767888874 35665555323355555555555554
Q ss_pred Hh
Q 015939 333 SM 334 (398)
Q Consensus 333 ~l 334 (398)
-+
T Consensus 222 il 223 (500)
T 3vld_A 222 IE 223 (500)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 287
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.81 E-value=24 Score=17.71 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.6
Q ss_pred ccccCccccCCC
Q 015939 14 FRCPISLDVMKS 25 (398)
Q Consensus 14 ~~Cpi~~~~~~d 25 (398)
|.|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 345555544443
No 288
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.78 E-value=24 Score=26.85 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=7.7
Q ss_pred CC-CCCccccc
Q 015939 48 HD-TCPATMQI 57 (398)
Q Consensus 48 ~~-~CP~~~~~ 57 (398)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 45 79999865
No 289
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.45 E-value=6.6 Score=26.85 Aligned_cols=41 Identities=10% Similarity=0.232 Sum_probs=23.5
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
.+-+-+.||.|+..+. . .+ ..|...||.|+..+.-.+-+|+
T Consensus 4 ~LL~iL~CP~ck~~L~----~------~~-------~~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE----Y------HQ-------DKQELWSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp SSSCCCBCSSSCCBCE----E------ET-------TTTEEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCe----E------eC-------CCCEEEcCCCCcEecCCCCeee
Confidence 3445678999996433 2 11 1244568888776655544443
No 290
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.01 E-value=55 Score=21.55 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=20.3
Q ss_pred cccccCccccCCC-ceecCCCcccchhHHHHHH
Q 015939 13 LFRCPISLDVMKS-PVSLCTGVTYDRSSIQHWL 44 (398)
Q Consensus 13 ~~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~~~ 44 (398)
=|.|..|...+.+ .....-|.-||+.|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3677777776643 3444557777777766655
No 291
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.95 E-value=48 Score=19.34 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=11.4
Q ss_pred CcccccCccccCCCce
Q 015939 12 NLFRCPISLDVMKSPV 27 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv 27 (398)
..|.|++|+..|..+-
T Consensus 11 k~~~C~~C~k~f~~~~ 26 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNS 26 (46)
T ss_dssp CSSSBTTTTBCCSSHH
T ss_pred CCcCCCCCCchhCCHH
Confidence 4578988887776653
No 292
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.83 E-value=19 Score=18.30 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=8.8
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 6787777766554
No 293
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.81 E-value=36 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=11.1
Q ss_pred cccCccccCCCceecCCCcccch
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDR 37 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r 37 (398)
.|+-|.+...+.++..-|..|-.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~ 29 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHV 29 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEET
T ss_pred CCcccCCEecceEEEECcccccc
Confidence 35555555445544444444433
No 294
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.79 E-value=13 Score=23.80 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=15.4
Q ss_pred CCcccccCccccCCCceecCCCcccchhH
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSS 39 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~ 39 (398)
-....||-|+.. ++.|-++||.|
T Consensus 12 ~~k~iCpkC~a~------~~~gaw~CrKC 34 (51)
T 3j21_g 12 FKKYVCLRCGAT------NPWGAKKCRKC 34 (51)
T ss_dssp SSEEECTTTCCE------ECTTCSSCSSS
T ss_pred hCCccCCCCCCc------CCCCceecCCC
Confidence 355679988876 55666666654
No 295
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.79 E-value=54 Score=22.44 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=14.1
Q ss_pred ccccCccccCC--Cceec-CCCcccchhHHHHHH
Q 015939 14 FRCPISLDVMK--SPVSL-CTGVTYDRSSIQHWL 44 (398)
Q Consensus 14 ~~Cpi~~~~~~--dPv~~-~~g~~~~r~~i~~~~ 44 (398)
|.|..|...+. ++..+ .-|.-||+.|..+.+
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 44555555543 23332 344455555544443
No 296
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.24 E-value=11 Score=25.89 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
.+-+-+.||.|+.-+. .. + .+|...||.|+..+.-.+-+|+
T Consensus 4 ~LL~iL~CP~ck~~L~----~~------~-------~~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE----FQ------R-------AQAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp CCCCCCBCTTTCCBEE----EE------T-------TTTEEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCE----Ee------C-------CCCEEEcCCCCceecCCCCeee
Confidence 3445678999998432 22 1 1234467777766655544444
No 297
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.96 E-value=18 Score=18.33 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=7.5
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|++|+..|..+
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 3 LKCRECGKQFTTS 15 (29)
T ss_dssp EECTTTSCEESCH
T ss_pred ccCCCCCCccCCh
Confidence 5566666655544
No 298
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.89 E-value=43 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=23.1
Q ss_pred ccccCccccCCCce-ecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 14 FRCPISLDVMKSPV-SLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
-.|+-|++...+.. +..-|..|=+.| ..|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 47888888777763 555666665544 34666666664
No 299
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=26.70 E-value=28 Score=17.74 Aligned_cols=13 Identities=8% Similarity=0.378 Sum_probs=7.6
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|+.|+..|..+
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 5666666655443
No 300
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.52 E-value=13 Score=26.32 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=23.5
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhc--C--CCCCCcccccCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--G--HDTCPATMQILST 60 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~--~~~CP~~~~~l~~ 60 (398)
+.+.||+|+..|... ..+.+.... + ...|+.|+..|..
T Consensus 27 ~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 457899988777654 334444321 2 2469999876543
No 301
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.45 E-value=14 Score=18.43 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=9.7
Q ss_pred ccccCccccCCCceec
Q 015939 14 FRCPISLDVMKSPVSL 29 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~ 29 (398)
|.|++|+..|...-.+
T Consensus 3 ~~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQL 18 (26)
Confidence 5677777666655433
No 302
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.44 E-value=25 Score=19.11 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.4
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|+..|..+
T Consensus 8 ~~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 8 KTHLCDMCGKKFKSK 22 (36)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred CCeecCcCCCCcCch
Confidence 347788887777655
No 303
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.19 E-value=23 Score=28.97 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=15.1
Q ss_pred CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939 30 CTGVTYDRSSIQHWLESGHDTCPATMQILS 59 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~ 59 (398)
.|||+|+. .-...||+|+.+-.
T Consensus 143 ~CG~i~~~--------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 143 ICGYTAVD--------EAPEYCPVCGAPKE 164 (170)
T ss_dssp TTCCEEES--------CCCSBCTTTCCBGG
T ss_pred CCCCeeCC--------CCCCCCCCCCCCHH
Confidence 49999972 22337999997643
No 304
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.00 E-value=28 Score=25.03 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=12.7
Q ss_pred CCCcccccCccccCCCc
Q 015939 10 VPNLFRCPISLDVMKSP 26 (398)
Q Consensus 10 ~~~~~~Cpi~~~~~~dP 26 (398)
-+..|.|++|...|...
T Consensus 14 ~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCBCSSSCCBCSSH
T ss_pred CCcCeECCCCCCccCCH
Confidence 34568999998888654
No 305
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.75 E-value=30 Score=22.93 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=24.2
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
...|.|++|...|...-.+. .| +..........|+.|+..+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~-~H------~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLA-SH------KTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHH-HH------HHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHHHH-HH------HHHcCCCCCEECCCCCchhCC
Confidence 45689999888877653332 11 111112223469999876543
No 306
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.68 E-value=5.6 Score=27.19 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=23.1
Q ss_pred CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN 66 (398)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (398)
-+-+.||.|+..+. . .+ .+|...||.|+..+.-.+-+|+
T Consensus 6 L~iL~CP~ck~~L~----~------~~-------~~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 6 LEILVCPLCKGPLV----F------DK-------SKDELICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp EEECBCTTTCCBCE----E------ET-------TTTEEEETTTTEEEEEETTEEC
T ss_pred hhheECCCCCCcCe----E------eC-------CCCEEEcCCCCcEecCCCCeee
Confidence 34568999996433 2 11 1244568888877665554444
No 307
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=25.31 E-value=2.9e+02 Score=22.85 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=99.3
Q ss_pred chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc----cCcchh--hHH
Q 015939 210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD----SRTQIL--TVE 283 (398)
Q Consensus 210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~----~~~~~~--~~~ 283 (398)
...+..|.. -..|.++|+..++.++.......... +.-.....++.-|++..|+.+-.. .+++.. --+
T Consensus 59 gnwrnaitd----pkyladllktrddmdllnemvvvfrs--ssvsfiktfvsvgglanlmaiykkkieaensntaideer 132 (353)
T 4dvg_B 59 GNWRNAITD----PKYLADLLKTRDDMDLLNEMVVVFRS--SSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEER 132 (353)
T ss_dssp CCHHHHTTS----HHHHHHHTTTCCCHHHHHHHHHHHHH--SCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CChhhccCC----hHHHHHHHhccchHHHhhhheEEEec--cchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHH
Confidence 345555554 25677888887677666655444433 444577788999999988876641 122222 235
Q ss_pred HHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC-----CC-------hhH-H----HH
Q 015939 284 KSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY-----KD-------ARV-K----EA 346 (398)
Q Consensus 284 ~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~-----~~-------~~~-~----~~ 346 (398)
+|+.+|+-.-..++...++.+-.|++..|++-+.+. .-.-.+-+.+|..++..+ ++ .++ + ..
T Consensus 133 kccevlryvfaeedatvalieidggvelllkgmnsk-ritpdnqldilleitltssmvehpsqeglylggdvcvmnafsn 211 (353)
T 4dvg_B 133 KCCEVLRYVFAEEDATVALIEIDGGVELLLKGMNSK-RITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSN 211 (353)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTSTTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccceEEEEEecccHHHHhcccccC-cCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHH
Confidence 899999998887777777776779999998887642 112234455555443211 11 111 1 12
Q ss_pred HHhcCC----HHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939 347 VVNSNG----LTKLLLVMQSENEGIVRKMCGDLVKVLGK 381 (398)
Q Consensus 347 ~~~~g~----~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~ 381 (398)
++..|+ +-....+...+.++..+....-++..+-+
T Consensus 212 lvsegvdmkkflsffslfsksksekfkhaslvlinnlid 250 (353)
T 4dvg_B 212 LVSEGVDMKKFLSFFSLFSKSKSEKFKHASLVLINNLID 250 (353)
T ss_dssp HHHTTSCSSTTHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_pred HHhccccHHHHHHHHHHHhhhhhhhcccceeehhhcccc
Confidence 333443 22344455555578888877777777765
No 308
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.18 E-value=6.3 Score=26.84 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=10.4
Q ss_pred CCCCcccccCccccC
Q 015939 9 AVPNLFRCPISLDVM 23 (398)
Q Consensus 9 ~~~~~~~Cpi~~~~~ 23 (398)
.+-+-+.||+|+..+
T Consensus 6 ~LLeiL~CP~ck~~L 20 (67)
T 2jny_A 6 QLLEVLACPKDKGPL 20 (67)
T ss_dssp GGTCCCBCTTTCCBC
T ss_pred HHHHHhCCCCCCCcC
Confidence 344567899999843
No 309
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.04 E-value=1.7e+02 Score=25.25 Aligned_cols=131 Identities=9% Similarity=-0.015 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcc
Q 015939 196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSD 274 (398)
Q Consensus 196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~ 274 (398)
+.-+..+++.+..++.....+. +++... +.+. .+..+--+++++.|+-.++. .+..+.+......+++.+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~~~l~---~~l~~~---~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSSDIK---DYIEEG---LGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGH---HHHHHH---TTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchHHHHH---HHHHHh---cCCC-chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 4456677777776654332221 122222 3333 67789999999999988888 56655543334555555421
Q ss_pred c------CcchhhHHHHHHHHHHHhCCHHH-HHHHhhccCcHHHHHHHHhc---------cChhHHHHHHHHHHHhhcc
Q 015939 275 S------RTQILTVEKSIKMLSIVATCSEG-RLALSEEASCAGRVVERVMK---------VGKTAREDAVVVIWSMCCV 337 (398)
Q Consensus 275 ~------~~~~~~~~~al~~L~~La~~~~~-~~~i~~~~g~v~~Lv~~l~~---------~~~~~~~~a~~~L~~l~~~ 337 (398)
. ..+..++-.+..++-|++..-.. +. .......+++.+.. .++++.-.++-+|.++...
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 1 12445666777788888762211 10 11234456666652 3566677777777777753
No 310
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.87 E-value=4.2e+02 Score=24.54 Aligned_cols=190 Identities=11% Similarity=0.141 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhc
Q 015939 84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVN 162 (398)
Q Consensus 84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~ 162 (398)
.+.+-.++..-...+.+ ++...+..++.+.-. ++. .+- .+++.++.+-.. .+.+++.-.+..|...+.
T Consensus 24 ~~~v~~lln~A~~~~~~--~Kl~~L~q~~EL~l~~dps---Ll~---~fl~~il~f~~d---~~~~vRk~~a~FieEa~~ 92 (386)
T 3o2t_A 24 SERVVDLLNQAALITND--SKITVLKQVQELIINKDPT---LLD---NFLDEIIAFQAD---KSIEVRKFVIGFIEEACK 92 (386)
T ss_dssp HHHHHHHHHHHHHCCST--HHHHHHHHHHHHHHTTCGG---GGG---GGHHHHHGGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccChH--HHHHHHHHHHHHHhccCHH---HHH---HHHHHHHHhccC---CcHHHHHHHHHHHHHHHH
Confidence 34455555555543333 788899999997543 332 332 677888877665 345667888888877664
Q ss_pred ccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhh--------cCchh---HHHhhc-hhhHHHHHHHHh
Q 015939 163 ENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSIS--------LDNES---KRRVLE-TENLLSALFDYL 230 (398)
Q Consensus 163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~--------~~~~~---~~~i~~-~~g~i~~Lv~lL 230 (398)
.+.+ . -..+++.|..+|...++.+.+.++.+..++- .++.. .....+ -..+-..++.++
T Consensus 93 ~~~e------l---~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ 163 (386)
T 3o2t_A 93 RDIE------L---LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLL 163 (386)
T ss_dssp HCGG------G---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHH------H---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 3222 1 1356788888888778888877776654442 22211 011111 123445566667
Q ss_pred ccccCHHHHHHHHHHHHHh----cCC-cc-----------------------hHHHHH--HcCChHHHHHHhcccCcchh
Q 015939 231 KLAEDQALNDAILSILITL----SVY-RS-----------------------VKAQLV--ELGMVQILTRILSDSRTQIL 280 (398)
Q Consensus 231 ~~~~~~~~~~~a~~aL~~L----s~~-~~-----------------------~~~~~v--~~g~v~~Lv~lL~~~~~~~~ 280 (398)
.+. +..++-.+++.+-.+ +.. .+ +...+- ..|.+..|++.+..+..++.
T Consensus 164 ds~-n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~ 242 (386)
T 3o2t_A 164 DSD-NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSI 242 (386)
T ss_dssp GCS-SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHH
T ss_pred ccC-CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccH
Confidence 666 777888888877665 211 00 123333 24567778888864333444
Q ss_pred hHHHHHHHHHHHhC
Q 015939 281 TVEKSIKMLSIVAT 294 (398)
Q Consensus 281 ~~~~al~~L~~La~ 294 (398)
....++..|..|+.
T Consensus 243 ~l~a~lnsLa~Iak 256 (386)
T 3o2t_A 243 NLTTALGSLANIAR 256 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666665
No 311
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.74 E-value=23 Score=17.84 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=7.7
Q ss_pred cccccCccccCCC
Q 015939 13 LFRCPISLDVMKS 25 (398)
Q Consensus 13 ~~~Cpi~~~~~~d 25 (398)
.|.|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3667766665544
No 312
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.65 E-value=43 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=12.0
Q ss_pred CcccccCccccCC-CceecCCCcccch
Q 015939 12 NLFRCPISLDVMK-SPVSLCTGVTYDR 37 (398)
Q Consensus 12 ~~~~Cpi~~~~~~-dPv~~~~g~~~~r 37 (398)
..-.|+-|.+... ..++..-|..|-+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~ 40 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHV 40 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECT
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccc
Confidence 3345666665543 3333334444433
No 313
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.81 E-value=16 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=10.2
Q ss_pred ccccCccccCCCceec
Q 015939 14 FRCPISLDVMKSPVSL 29 (398)
Q Consensus 14 ~~Cpi~~~~~~dPv~~ 29 (398)
|.|++|+..|..+-.+
T Consensus 3 ~~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSL 18 (29)
Confidence 5677777776665443
No 314
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.79 E-value=30 Score=24.69 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred CcccccCccccCC-CceecCCCcccchhHHHHHHh-cCCCCCCcccccCC
Q 015939 12 NLFRCPISLDVMK-SPVSLCTGVTYDRSSIQHWLE-SGHDTCPATMQILS 59 (398)
Q Consensus 12 ~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~ 59 (398)
..|.|++|...|. ..-.+. -| +...-. .....|+.|+..|.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~-~H------~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK-KH------MEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH-HH------HHHHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHH-HH------HHHHcCCCCCEECCCCCCccC
Confidence 4688999988887 554433 11 111111 22347999976654
No 315
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.57 E-value=23 Score=19.36 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=10.9
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|..+
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2els_A 8 KIFTCEYCNKVFKFK 22 (36)
T ss_dssp CCEECTTTCCEESSH
T ss_pred CCEECCCCCceeCCH
Confidence 457888888777654
No 316
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.34 E-value=51 Score=24.93 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=28.2
Q ss_pred CcccccCccccCC--CceecCCCcccchhHHHHHHh
Q 015939 12 NLFRCPISLDVMK--SPVSLCTGVTYDRSSIQHWLE 45 (398)
Q Consensus 12 ~~~~Cpi~~~~~~--dPv~~~~g~~~~r~~i~~~~~ 45 (398)
.=|.|-.|...+. +.....-|.-||+.|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 4589999999993 467777899999999998874
No 317
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.93 E-value=17 Score=18.61 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=11.4
Q ss_pred cccccCccccCCCceec
Q 015939 13 LFRCPISLDVMKSPVSL 29 (398)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~ 29 (398)
.|.|+.|+..|..+-.+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGAL 19 (30)
Confidence 36788887777665444
No 318
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=23.09 E-value=3.7e+02 Score=23.26 Aligned_cols=129 Identities=7% Similarity=0.167 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhc
Q 015939 194 DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILS 273 (398)
Q Consensus 194 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~ 273 (398)
+.+.....-...|..+.+.. +. ..+++.++.+-.+. +.++++..+..|...+..+.. .-..+++.|..++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~--ll--~~~l~~il~~~~~~-~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~ 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE--LA--EEFLESVLSLAHDS-NMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLR 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG--GH--HHHHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCHh--HH--HHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHc
Confidence 45555556666666654322 21 56788888876565 888999999999988743321 12236778888885
Q ss_pred ccCcchhhHHHHHHHHHH--------HhCCHH------HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939 274 DSRTQILTVEKSIKMLSI--------VATCSE------GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335 (398)
Q Consensus 274 ~~~~~~~~~~~al~~L~~--------La~~~~------~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~ 335 (398)
+.++.+.+.+..+..+ ++.++. .....+ ...-..++.++.+++..++-+|+..+..+-
T Consensus 101 --d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 101 --DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 4678888877765444 333321 222222 134445666667789999999999888754
No 319
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=23.03 E-value=32 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=22.6
Q ss_pred CCCcccchhHHHHHHhcC-CCCCCcccccCCCC
Q 015939 30 CTGVTYDRSSIQHWLESG-HDTCPATMQILSTK 61 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~ 61 (398)
.||+.|.+..+.+.+..+ .+.||.|+..+++.
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~ 158 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN 158 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEE
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCcc
Confidence 588888887766655432 46899998776643
No 320
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.99 E-value=22 Score=17.92 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=8.1
Q ss_pred cccccCccccCCC
Q 015939 13 LFRCPISLDVMKS 25 (398)
Q Consensus 13 ~~~Cpi~~~~~~d 25 (398)
.|.|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 3667777666554
No 321
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.86 E-value=54 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=13.5
Q ss_pred ccccCccccCCC-ceecCCCcccchhHHHH
Q 015939 14 FRCPISLDVMKS-PVSLCTGVTYDRSSIQH 42 (398)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~~~g~~~~r~~i~~ 42 (398)
|.|..|...+.+ +....-|.-||+.+..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 455555554443 33333455555555443
No 322
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.81 E-value=26 Score=19.14 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=10.5
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|..+
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elq_A 8 KPFKCSLCEYATRSK 22 (36)
T ss_dssp CSEECSSSSCEESCH
T ss_pred CCccCCCCCchhCCH
Confidence 347888887777654
No 323
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=22.58 E-value=31 Score=23.84 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=24.4
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~ 60 (398)
..|.|++|+..|..+-.+. .| +..........|+.|+..+..
T Consensus 2 k~~~C~~C~k~f~~~~~L~-~H------~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLT-TH------IRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CCEECTTTCCEESCHHHHH-HH------HHHHHCCCCEECTTTCCEESS
T ss_pred CCCcCCCCCCccCCHHHHH-HH------HHHcCCCCCccCCCCCCccCC
Confidence 3588999888777654333 11 122222223469999876643
No 324
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=22.23 E-value=31 Score=24.59 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=32.0
Q ss_pred cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC--CC-cccHHHHHHHHHH
Q 015939 8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK--EF-VPNLTLHRLIAHW 76 (398)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~--~l-~~n~~l~~~i~~~ 76 (398)
..+|..|.||.|.-.=. |.. .+++. -..|.-.|-.|++.++.. .+ .|.....+-|+..
T Consensus 18 ~~L~t~F~CPfCnh~~s--V~v----kidk~-----~~~g~l~C~~Cg~~~~~~i~~L~epiDVYs~WiDac 78 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKS--CDV----KMDRA-----RNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDAC 78 (85)
T ss_dssp CCCSSCCCCTTTCCSSC--EEE----EEETT-----TTEEEEEESSSCCEEEEECCSSCCTTHHHHHHHHHH
T ss_pred CCCCCeEcCCCCCCCCe--EEE----EEEcc-----CCEEEEEcccCCCeEEeccCccCcchhhHHHHHHHH
Confidence 47889999999986431 111 23332 112345789998876532 22 3444444444443
No 325
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.00 E-value=38 Score=23.33 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=21.9
Q ss_pred cccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
.|+-|.+...+.++..-|.+|-..| ..|..|+.+|...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 17 ICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp BCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 5777777666666666665555433 2455555555533
No 326
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.98 E-value=26 Score=18.98 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=10.2
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 8 KPYKCPQCSYASAIK 22 (36)
T ss_dssp CSEECSSSSCEESSH
T ss_pred CCCCCCCCCcccCCH
Confidence 357888877766554
No 327
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=32 Score=18.83 Aligned_cols=15 Identities=13% Similarity=0.261 Sum_probs=9.9
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|..+
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 347788877766553
No 328
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.32 E-value=28 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=9.4
Q ss_pred cccccCccccCCCc
Q 015939 13 LFRCPISLDVMKSP 26 (398)
Q Consensus 13 ~~~Cpi~~~~~~dP 26 (398)
.|.|++|+..|...
T Consensus 7 ~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 7 GYVCALCLKKFVSS 20 (35)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCcchhCCH
Confidence 47788877666553
No 329
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.27 E-value=54 Score=23.06 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=27.0
Q ss_pred CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK 61 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~ 61 (398)
..-.|.-|.+...+.++..-|..|-..| ..|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCC
Confidence 3346888888877777766776666544 3466677666543
No 330
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.26 E-value=59 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=10.9
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.||+|...|..+
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457788888877654
No 331
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.93 E-value=35 Score=22.87 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=8.1
Q ss_pred ccccCccccCCCc
Q 015939 14 FRCPISLDVMKSP 26 (398)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (398)
|.|++|+..|.+.
T Consensus 2 ~~C~~C~~~f~~~ 14 (82)
T 2kmk_A 2 FDCKICGKSFKRS 14 (82)
T ss_dssp EECSSSCCEESSH
T ss_pred ccCCCCcccccCc
Confidence 5677776666543
No 332
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.67 E-value=28 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=15.3
Q ss_pred cCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939 29 LCTGVTYDRSSIQHWLESGHDTCPATMQIL 58 (398)
Q Consensus 29 ~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l 58 (398)
..|||+|+-. .-...||+|+.+-
T Consensus 159 ~~CG~~~~g~-------~~p~~CP~C~~~k 181 (191)
T 1lko_A 159 RNCGYVHEGT-------GAPELCPACAHPK 181 (191)
T ss_dssp TTTCCEEEEE-------ECCSBCTTTCCBG
T ss_pred CCCCCEeeCC-------CCCCCCCCCcCCH
Confidence 4599999821 2123799999863
No 333
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=37 Score=19.24 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=10.6
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|+..|..+
T Consensus 9 k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 9 KPYSCAECKETFSDN 23 (42)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeECCCCCCccCCH
Confidence 347888887777654
No 334
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.53 E-value=29 Score=24.23 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=11.2
Q ss_pred CcccccCccccCCCce
Q 015939 12 NLFRCPISLDVMKSPV 27 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv 27 (398)
..|.|++|...|..+-
T Consensus 6 ~~~~C~~C~~~f~~~~ 21 (95)
T 2yt9_A 6 SGVACEICGKIFRDVY 21 (95)
T ss_dssp SCEECSSSCCEESSSH
T ss_pred CCeECCCCCCccCChH
Confidence 4578888887776543
No 335
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.52 E-value=43 Score=19.52 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=11.8
Q ss_pred CcccccCccccCCCce
Q 015939 12 NLFRCPISLDVMKSPV 27 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dPv 27 (398)
..|.|++|...|..+-
T Consensus 11 k~~~C~~C~k~F~~~~ 26 (46)
T 2enh_A 11 KPYECDVCRKAFSHHA 26 (46)
T ss_dssp SSCBCTTTCCBCSSSH
T ss_pred CCcCCCCcCchhCCHH
Confidence 4588999888776653
No 336
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=20.41 E-value=38 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=20.8
Q ss_pred CCCcccchhHHHHHHhcC-CCCCCcccc-cCCC
Q 015939 30 CTGVTYDRSSIQHWLESG-HDTCPATMQ-ILST 60 (398)
Q Consensus 30 ~~g~~~~r~~i~~~~~~~-~~~CP~~~~-~l~~ 60 (398)
.||+.|.+..+.+.+..+ .+.||.|+. .+++
T Consensus 128 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lrP 160 (253)
T 1ma3_A 128 DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKP 160 (253)
T ss_dssp TTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEE
T ss_pred CCCCcCcHHHHHHHhccCCCCCCCCCCCccccc
Confidence 577777776665554432 478999997 6654
No 337
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=30 Score=18.81 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=10.4
Q ss_pred CcccccCccccCCCc
Q 015939 12 NLFRCPISLDVMKSP 26 (398)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (398)
..|.|++|...|..+
T Consensus 8 k~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 8 LLYDCHICERKFKNE 22 (36)
T ss_dssp CCEECSSSCCEESSH
T ss_pred CCeECCCCCCccCCH
Confidence 357888887766654
Done!