Query 015940
Match_columns 398
No_of_seqs 156 out of 531
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 6E-25 2E-29 176.3 8.2 86 75-160 1-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.9 9.3E-06 3.2E-10 62.4 5.1 50 77-138 10-60 (64)
3 1w0t_A Telomeric repeat bindin 97.8 3.4E-05 1.2E-09 56.4 5.6 48 79-138 3-51 (53)
4 1ity_A TRF1; helix-turn-helix, 97.7 5.9E-05 2E-09 57.9 6.4 53 74-138 6-59 (69)
5 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00028 9.5E-09 55.9 7.2 55 74-138 14-68 (73)
6 2d9a_A B-MYB, MYB-related prot 97.4 0.00014 4.7E-09 54.3 4.7 52 73-137 3-54 (60)
7 2din_A Cell division cycle 5-l 97.4 0.00054 1.9E-08 52.0 7.9 53 74-141 5-57 (66)
8 1guu_A C-MYB, MYB proto-oncoge 97.4 0.00017 5.9E-09 52.2 4.5 47 78-137 3-49 (52)
9 2yum_A ZZZ3 protein, zinc fing 97.3 0.00064 2.2E-08 52.7 7.5 57 73-137 3-59 (75)
10 2dim_A Cell division cycle 5-l 97.3 0.00029 1E-08 54.0 5.1 52 73-137 4-55 (70)
11 1x41_A Transcriptional adaptor 97.2 0.00057 1.9E-08 51.3 5.9 50 75-137 5-54 (60)
12 2llk_A Cyclin-D-binding MYB-li 97.2 0.00031 1.1E-08 55.6 4.4 51 73-138 18-68 (73)
13 2cqq_A RSGI RUH-037, DNAJ homo 97.1 0.0017 5.7E-08 51.2 8.1 53 76-139 6-58 (72)
14 2elk_A SPCC24B10.08C protein; 97.1 0.00083 2.8E-08 50.2 5.8 46 79-136 10-55 (58)
15 1gvd_A MYB proto-oncogene prot 97.0 0.00051 1.8E-08 49.7 4.0 47 78-137 3-49 (52)
16 2cu7_A KIAA1915 protein; nucle 97.0 0.0011 3.8E-08 51.2 6.2 53 73-139 4-56 (72)
17 2roh_A RTBP1, telomere binding 97.0 0.0013 4.5E-08 56.8 7.1 57 74-139 27-83 (122)
18 2yus_A SWI/SNF-related matrix- 97.0 0.00078 2.7E-08 53.8 4.9 47 76-136 16-62 (79)
19 2juh_A Telomere binding protei 97.0 0.0029 1E-07 54.6 8.6 57 74-139 13-69 (121)
20 2ckx_A NGTRF1, telomere bindin 96.7 0.0025 8.5E-08 51.5 5.8 51 80-139 2-52 (83)
21 3osg_A MYB21; transcription-DN 96.6 0.0021 7.3E-08 54.3 5.2 52 74-139 58-109 (126)
22 2cjj_A Radialis; plant develop 96.6 0.0053 1.8E-07 50.6 7.2 58 78-145 8-65 (93)
23 2k9n_A MYB24; R2R3 domain, DNA 96.6 0.004 1.4E-07 51.1 6.5 52 74-139 49-100 (107)
24 2aje_A Telomere repeat-binding 96.4 0.0022 7.7E-08 54.0 4.1 55 74-138 9-64 (105)
25 3osg_A MYB21; transcription-DN 96.4 0.0035 1.2E-07 53.0 4.9 49 75-137 8-56 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 96.2 0.0026 8.9E-08 51.7 3.4 51 74-138 52-102 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0062 2.1E-07 50.0 4.8 46 79-137 2-47 (107)
28 2ltp_A Nuclear receptor corepr 94.9 0.0014 4.7E-08 53.0 0.0 53 74-140 12-64 (89)
29 1gv2_A C-MYB, MYB proto-oncoge 95.8 0.0059 2E-07 49.6 3.6 46 78-136 4-49 (105)
30 1h8a_C AMV V-MYB, MYB transfor 95.7 0.0081 2.8E-07 50.6 4.3 51 74-137 23-73 (128)
31 1x58_A Hypothetical protein 49 95.7 0.012 4E-07 45.8 4.7 49 78-138 8-57 (62)
32 1h8a_C AMV V-MYB, MYB transfor 95.4 0.0058 2E-07 51.5 2.1 51 74-138 75-125 (128)
33 3zqc_A MYB3; transcription-DNA 95.3 0.0077 2.6E-07 51.1 2.6 51 74-138 50-100 (131)
34 1h89_C C-MYB, MYB proto-oncoge 94.7 0.023 7.9E-07 49.4 3.9 51 74-137 54-104 (159)
35 1h89_C C-MYB, MYB proto-oncoge 94.1 0.02 7E-07 49.7 2.3 51 74-138 106-156 (159)
36 3zqc_A MYB3; transcription-DNA 94.0 0.014 4.8E-07 49.5 1.1 46 79-137 3-48 (131)
37 1ug2_A 2610100B20RIK gene prod 93.7 0.37 1.3E-05 40.2 8.9 69 68-147 23-91 (95)
38 1wgx_A KIAA1903 protein; MYB D 92.7 0.19 6.6E-06 39.9 5.6 50 78-137 8-57 (73)
39 1ign_A Protein (RAP1); RAP1,ye 91.4 0.11 3.8E-06 49.7 3.3 53 78-138 8-60 (246)
40 2lr8_A CAsp8-associated protei 89.3 0.061 2.1E-06 42.7 0.0 58 76-145 12-69 (70)
41 3hm5_A DNA methyltransferase 1 88.8 0.74 2.5E-05 38.1 5.8 56 79-144 31-87 (93)
42 2eqr_A N-COR1, N-COR, nuclear 88.5 0.58 2E-05 35.0 4.6 45 76-134 10-54 (61)
43 2iw5_B Protein corest, REST co 87.3 0.5 1.7E-05 45.0 4.4 48 76-137 131-178 (235)
44 1fex_A TRF2-interacting telome 79.9 1.9 6.7E-05 32.3 4.1 52 79-135 3-55 (59)
45 2xag_B REST corepressor 1; ami 78.0 3.2 0.00011 43.1 6.3 44 76-133 378-421 (482)
46 4iej_A DNA methyltransferase 1 59.9 17 0.0006 30.0 5.8 57 79-145 31-88 (93)
47 1ndd_A NEDD8, protein (ubiquit 55.3 30 0.001 24.7 6.0 57 277-339 15-71 (76)
48 2yqk_A Arginine-glutamic acid 50.8 40 0.0014 25.2 6.1 44 73-130 4-48 (63)
49 3a9j_A Ubiquitin; protein comp 50.5 46 0.0016 23.7 6.3 56 277-338 15-70 (76)
50 1wx7_A Ubiquilin 3; ubiquitin- 43.9 69 0.0024 25.3 6.9 68 266-339 18-87 (106)
51 3b08_A Polyubiquitin-C, ubiqui 35.5 97 0.0033 25.1 6.7 46 276-325 14-59 (152)
52 3n3k_B Ubiquitin; hydrolase, p 34.9 90 0.0031 22.8 5.9 56 278-339 19-74 (85)
53 1yx5_B Ubiquitin; proteasome, 34.5 96 0.0033 23.9 6.2 58 278-341 16-73 (98)
54 2xzm_J Ribosomal protein S10 c 34.2 15 0.0005 31.3 1.5 40 295-342 79-119 (120)
55 2bwf_A Ubiquitin-like protein 32.9 1.2E+02 0.004 21.8 6.1 65 268-338 7-73 (77)
56 3k9o_B Ubiquitin, UBB+1; E2-25 32.9 1.2E+02 0.0041 23.0 6.5 56 278-339 17-72 (96)
57 4eew_A Large proline-rich prot 32.7 81 0.0028 23.6 5.4 66 267-339 19-87 (88)
58 2c9l_Y EB1, zebra, BZLF1 trans 32.7 32 0.0011 26.3 2.9 21 126-146 13-33 (63)
59 3phx_B Ubiquitin-like protein 31.5 1.1E+02 0.0037 22.3 5.8 53 281-339 23-75 (79)
60 2zkq_j 40S ribosomal protein S 31.4 14 0.00047 31.4 0.8 39 295-341 79-118 (119)
61 3mtn_B UBA80, ubcep1, ubiquiti 31.3 1.1E+02 0.0036 22.4 5.7 55 279-339 20-74 (85)
62 3dbh_I NEDD8; cell cycle, acti 30.6 88 0.003 23.1 5.2 55 278-338 28-82 (88)
63 2l7r_A Ubiquitin-like protein 30.0 64 0.0022 25.0 4.5 67 266-339 20-88 (93)
64 3m63_B Ubiquitin domain-contai 29.6 80 0.0027 25.1 5.1 66 267-338 30-97 (101)
65 1irz_A ARR10-B; helix-turn-hel 28.5 1.2E+02 0.0041 23.3 5.6 53 73-134 2-54 (64)
66 4eef_G F-HB80.4, designed hema 27.9 3.4 0.00012 33.1 -3.3 45 78-132 20-64 (74)
67 2klc_A Ubiquilin-1; ubiquitin- 27.2 1.6E+02 0.0053 23.2 6.4 80 242-339 14-95 (101)
68 4dwf_A HLA-B-associated transc 27.1 1.2E+02 0.004 22.8 5.4 57 278-341 21-77 (90)
69 3v6c_B Ubiquitin; structural g 25.9 1.5E+02 0.0053 22.4 6.0 56 278-339 33-88 (91)
70 1wy8_A NP95-like ring finger p 24.8 1.1E+02 0.0037 22.9 4.9 69 265-339 7-80 (89)
71 4fbj_B NEDD8; effector-HOST ta 24.7 1.5E+02 0.005 22.6 5.6 55 279-339 17-71 (88)
72 1wlx_A Alpha-actinin 4; three- 24.5 1.1E+02 0.0038 26.4 5.3 58 82-139 43-113 (129)
73 3u30_A Ubiquitin, linear DI-ub 24.5 1.7E+02 0.0057 24.8 6.5 55 278-338 36-90 (172)
74 2dzi_A Ubiquitin-like protein 24.0 1.6E+02 0.0054 21.3 5.5 66 267-338 9-77 (81)
75 3b08_A Polyubiquitin-C, ubiqui 23.6 2.1E+02 0.0071 23.0 6.7 69 265-339 76-147 (152)
76 2cuf_A FLJ21616 protein; homeo 23.2 2.6E+02 0.0089 21.8 7.0 64 76-145 9-82 (95)
77 1sif_A Ubiquitin; hydrophobic 23.1 1.7E+02 0.0057 22.2 5.7 55 279-339 26-80 (88)
78 3r8n_J 30S ribosomal protein S 23.0 24 0.00083 28.6 0.8 38 294-339 59-98 (98)
79 2dmt_A Homeobox protein BARH-l 22.7 2.5E+02 0.0084 21.1 9.3 60 74-144 17-76 (80)
80 1j8c_A Ubiquitin-like protein 22.6 3E+02 0.01 22.7 7.5 68 266-339 33-102 (125)
81 2faz_A Ubiquitin-like containi 22.0 2.3E+02 0.0078 20.4 6.8 67 267-339 4-75 (78)
82 3u5c_U 40S ribosomal protein S 21.2 28 0.00097 29.6 0.9 39 295-341 81-120 (121)
83 1uel_A HHR23B, UV excision rep 21.1 2.1E+02 0.0073 21.9 6.0 58 278-341 16-76 (95)
84 2kan_A Uncharacterized protein 21.0 1.9E+02 0.0064 22.5 5.7 72 261-338 10-85 (94)
85 1wh3_A 59 kDa 2'-5'-oligoadeny 20.7 1.5E+02 0.0051 21.9 4.9 68 266-339 8-78 (87)
86 1yqb_A Ubiquilin 3; structural 20.7 1.4E+02 0.0046 23.6 4.8 68 266-339 23-92 (100)
87 1ut1_A DRAA, DR hemagglutinin 20.3 25 0.00087 31.2 0.5 18 318-335 130-147 (148)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.91 E-value=6e-25 Score=176.33 Aligned_cols=86 Identities=91% Similarity=1.401 Sum_probs=81.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 015940 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK 154 (398)
Q Consensus 75 skRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd~nkGsGskk 154 (398)
++|..+||++||++||++|++++..|..++++..+|++||+.|.++||+||+.||+.||+||++.||++|++++.+|+.+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~ 80 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK 80 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 46889999999999999999999999998899999999999999999999999999999999999999999988778789
Q ss_pred CcChHH
Q 015940 155 MSYYKE 160 (398)
Q Consensus 155 WpYFDE 160 (398)
|+||++
T Consensus 81 ~~yf~e 86 (86)
T 2ebi_A 81 MSYYKE 86 (86)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 999975
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.95 E-value=9.3e-06 Score=62.42 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 015940 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (398)
Q Consensus 77 Rg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY-~RSaeQCr~KWKNLKK 138 (398)
+...||.+|-..|+++...+ .. .-|..||+.+ ++ .||+.||++||+||++
T Consensus 10 kk~~WT~eED~~L~~~V~~~----G~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKY----GE-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----CT-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc----CC-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 34589999999999988764 11 1399999764 33 4999999999999985
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.78 E-value=3.4e-05 Score=56.42 Aligned_cols=48 Identities=27% Similarity=0.592 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY-~RSaeQCr~KWKNLKK 138 (398)
..||.+|...|+++...+- ..-|..||..| ++ .||+.||+++|.||.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 5899999999999988641 12599999987 45 4999999999999975
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.73 E-value=5.9e-05 Score=57.93 Aligned_cols=53 Identities=25% Similarity=0.576 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY-~RSaeQCr~KWKNLKK 138 (398)
+..+...||.+|..+|+++...+ .. .-|..||..|. + .||+.||+++|.|+.+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKY----GE-----GNWSKILLHYK---FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC-----CcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence 44456799999999999998764 11 25999999873 5 7999999999999875
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.49 E-value=0.00028 Score=55.85 Aligned_cols=55 Identities=16% Similarity=0.478 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
+......||.+|-.+|+.+...+ . +....-|+.||..|- .||..||+.+|.+|..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~----g--~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQY----P--RGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHS----C--SSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHc----C--CCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 33345689999999999987643 2 124578999999884 4999999999999974
No 6
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.44 E-value=0.00014 Score=54.26 Aligned_cols=52 Identities=19% Similarity=0.532 Sum_probs=41.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
.|.-+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 3555567999999999999887631 124999999974 499999999998764
No 7
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00054 Score=51.98 Aligned_cols=53 Identities=19% Similarity=0.513 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK 141 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YK 141 (398)
|.-....||.+|-..||++... +. .-|..||. |- | ||+.||+++|.++.+.-.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~----~g------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL----MP------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH----CT------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----cC------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHh
Confidence 4555668999999999998653 21 15999999 64 4 999999999999986543
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.38 E-value=0.00017 Score=52.17 Aligned_cols=47 Identities=21% Similarity=0.583 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
...||.+|-..|+++...+- . .-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G----~-----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNG----T-----DDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHC----S-----SCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC----C-----CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 35899999999999987641 1 24999999974 599999999999875
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00064 Score=52.69 Aligned_cols=57 Identities=11% Similarity=0.349 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
.|......||.+|-..|+++... |........-|..||+.|. .||+.||+.+|.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 45555679999999999998764 3222223468999999995 499999999996554
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00029 Score=54.05 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=41.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
.+.-+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 4555667999999999999887631 125999999985 699999999998754
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.22 E-value=0.00057 Score=51.25 Aligned_cols=50 Identities=12% Similarity=0.373 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 75 skRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
.-....||.+|-..||++...+ .. .-|..||..|. .||+.||+.+|.+..
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC----GF-----GNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT----CT-----TCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----Cc-----CcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 3345689999999999997653 11 24999999994 499999999998764
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.20 E-value=0.00031 Score=55.63 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=41.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
.|.-....||.+|-..||++..++- + -|..||..| .||..||+++|+.|++
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G--------~--kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG--------N--DWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS--------S--CHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC--------C--CHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 4555567999999999999987631 1 199999998 4999999999998864
No 13
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.15 E-value=0.0017 Score=51.20 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
.....||.+|-++|+.+.. .|.... ..-|+.||+.| | ||++||+.+|+.|+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3456899999999998876 343222 35699999998 4 9999999999999764
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.11 E-value=0.00083 Score=50.20 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNL 136 (398)
..||.+|-..|+++...+- ..-|..||+.|. -.||+.||+.+|.++
T Consensus 10 ~~WT~eED~~L~~~v~~~G---------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLG---------LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTT---------TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 4799999999999887531 135999999984 259999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.05 E-value=0.00051 Score=49.74 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 35899999999999887631 124999999874 599999999998753
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.04 E-value=0.0011 Score=51.22 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
.|.-....||.+|-.+||++...+- .-|..||..|. .||..||+++|.++.+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 4555567999999999999887631 15999999884 49999999999988753
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.03 E-value=0.0013 Score=56.85 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
..++...||.+|..+|++....+ .. .-|..|+..+...=-.||..||++||+||.+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GT-----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SS-----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 33445699999999999988864 11 25999998654211259999999999999964
No 18
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.99 E-value=0.00078 Score=53.78 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNL 136 (398)
.....||.+|..+||++...+ . .-|..||+.|. .||+.||+.+|.+|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~----G------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMY----K------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHS----S------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHh----C------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 346799999999999987652 2 35999999985 49999999999866
No 19
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.95 E-value=0.0029 Score=54.62 Aligned_cols=57 Identities=14% Similarity=0.333 Sum_probs=43.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
+......||.+|..+|++....+- ..-|..|+..+...--.||..||++||+||.+.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G---------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHG---------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 344456999999999999888642 126999998874311259999999999999975
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.70 E-value=0.0025 Score=51.51 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 80 TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 80 ~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
.||.+|..+|++....+ .. .-|..|++.-...=-.||..||++||+||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~-----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC-----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999988763 11 25999998521100259999999999999863
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.64 E-value=0.0021 Score=54.31 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=41.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
|.-....||.+|-..|+++..++- .-|..||..|. .||..||+++|.+|.+.
T Consensus 58 p~~~~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 58 PSISHTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 344456899999999999988752 13999998763 59999999999999864
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.60 E-value=0.0053 Score=50.61 Aligned_cols=58 Identities=12% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd 145 (398)
...||.+|-.+|+.+...+ .. -...-|+.||..|- .||..||+.+|++|...-+.++.
T Consensus 8 ~~~WT~eEd~~L~~al~~~----~~--~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY----DK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS----CT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----CC--CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhc
Confidence 4589999999999887642 21 13467999999985 39999999999999977655543
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.59 E-value=0.004 Score=51.11 Aligned_cols=52 Identities=23% Similarity=0.502 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~ 139 (398)
|.-....||.+|-..||.+...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 49 p~i~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 49 PALRTDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 444456999999999999987641 14999999884 59999999999999875
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.44 E-value=0.0022 Score=54.04 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkG-Y~RSaeQCr~KWKNLKK 138 (398)
+..+...||.+|..+|++....+ .. .-|..|+..+.. - -.||..||++||+||.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKL----GT-----GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHH----CS-----SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHh
Confidence 34445699999999999988753 11 259999875421 1 25999999999999996
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.36 E-value=0.0035 Score=52.99 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 75 skRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
..+...||.+|...|+++...+- .-|..||..|. .||+.||+.+|.|..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHG----------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHT----------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 34456899999999999998651 14999998874 599999999999755
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.25 E-value=0.0026 Score=51.70 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|.+|.+
T Consensus 52 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 52 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred CcccccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 444456999999999999987642 24999998663 4999999999999865
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.06 E-value=0.0062 Score=49.98 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 4799999999999987642 125999999885 599999999998753
No 28
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.86 E-value=0.0014 Score=53.05 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 140 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~Y 140 (398)
|.-....||.+|-.+||++...+ +.-|..||..|. .||..||++.|.++.+.+
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~----------G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEH----------GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 44446699999999999988764 123999999985 499999999999887654
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.83 E-value=0.0059 Score=49.59 Aligned_cols=46 Identities=20% Similarity=0.598 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNL 136 (398)
...||.+|...|+++...+-. .-|..||..|. .||+.||+.+|.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 358999999999999876421 24999999874 59999999999875
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.74 E-value=0.0081 Score=50.58 Aligned_cols=51 Identities=22% Similarity=0.627 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
|.-....||.+|...|+++...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYG----P-----KRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTC----S-----CCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC----C-----CCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 444456899999999999887531 1 24999999874 599999999998744
No 31
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.74 E-value=0.012 Score=45.77 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY-~RSaeQCr~KWKNLKK 138 (398)
...||.+|+..||+...++ . .-|..|+..-.- + .||....++||+||++
T Consensus 8 r~~WT~EE~~~L~~gV~k~----G------~~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTM----G------NHWNSILWSFPF--QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHH----C------SCHHHHHHHSCC--CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH----h------HhHHHHHHhCCC--ccCcccchHHHHHHHHHh
Confidence 4699999999999998875 1 249999865321 3 5999999999999985
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.40 E-value=0.0058 Score=51.49 Aligned_cols=51 Identities=18% Similarity=0.623 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|.+|.+
T Consensus 75 p~~~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 75 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444456899999999999988642 24999998763 5999999999998864
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.31 E-value=0.0077 Score=51.10 Aligned_cols=51 Identities=14% Similarity=0.424 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
|.-....||.+|-..||+++.++- .-|..||..|. .||..||+++|.++.+
T Consensus 50 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 50 PAVVKHAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 344455899999999999887632 13999998764 5999999999998764
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.66 E-value=0.023 Score=49.36 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
|.-....||.+|-..|+.+...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 54 p~~~~~~Wt~eEd~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 54 PELIKGPWTKEEDQRVIKLVQKYG----P-----KRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHC----S-----CCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCcCCCCCChHHHHHHHHHHHHhC----c-----ccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 444567999999999999987641 1 23999998874 599999999998753
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.13 E-value=0.02 Score=49.71 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
|.-+...||.+|-..||++...+- .-|..||..|. .||..||+++|..|.+
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444567999999999999987642 24999998763 4999999999998764
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.02 E-value=0.014 Score=49.49 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
..||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 3799999999999887641 124999998873 599999999998765
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.69 E-value=0.37 Score=40.18 Aligned_cols=69 Identities=16% Similarity=0.476 Sum_probs=55.3
Q ss_pred CCCccCCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccC
Q 015940 68 DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQD 147 (398)
Q Consensus 68 ~~~~s~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd~n 147 (398)
+..++.+....-.||+++-+.+|..+.+ .....+.|..||.+|. +|++.|.+++|..|.+-|.+.....
T Consensus 23 N~~~~s~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 23 NSKVSSTGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CCCCCCCCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred cceecCCCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHhccC
Confidence 3345556677889999999988887765 3355678999999986 5899999999999999999876654
No 38
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.67 E-value=0.19 Score=39.86 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
...||.+|.++|...... |.. ....-|+.||+.+- .||+++|..+++.|.
T Consensus 8 ~~~WT~eE~k~fe~ALa~----~~~--~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFAS----LPK--HKPGFWSEVAAAVG----SRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHH----SCS--SSSSHHHHHHHHTT----TSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHH----CCC--CCccHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 457999999999887653 322 23468999999875 299999998887774
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.35 E-value=0.11 Score=49.67 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK 138 (398)
...||.+|-..||++...+-.. ....+.|.+||..|. .||..||+++|+++.+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~----r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTR----RTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGG----TTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCcC----ccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 3489999999999988763221 123355999998765 4999999999998653
No 40
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=89.34 E-value=0.061 Score=42.70 Aligned_cols=58 Identities=19% Similarity=0.501 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd 145 (398)
...-.||.+|-+.+|....+ .....+.|..||.+| +||+.|..++|..|.+-|++-|.
T Consensus 12 e~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 34568999998888776554 334557899999887 49999999999999999998764
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=88.80 E-value=0.74 Score=38.08 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHhc
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKEFKKTK 144 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY-~RSaeQCr~KWKNLKK~YKKIK 144 (398)
..||.+||..|+++..+++-+ |-.|+..+.-.++ .||.++.+.++-.+.+...+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----------W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999875543 6677777764444 5999999999999998877776
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.48 E-value=0.58 Score=34.99 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWK 134 (398)
+....||.+|..+|++.+..+ .+-|..||..|. .||..||...|-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy 54 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYY 54 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHH
Confidence 456899999999999888763 135999996664 599999986654
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.33 E-value=0.5 Score=44.96 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLK 137 (398)
+....||.+|..++++....+-. -|..||+.|. .||..||++-|-+-+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK----------DW~~IAk~Vg----TKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR----------DFQAISDVIG----NKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS----------CHHHHHHHHS----SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----------CHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 44679999999999887765321 2999999874 599999998875433
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=79.92 E-value=1.9 Score=32.35 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA-KMREKGFDRSPTMCTDKWRN 135 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAe-kMaEkGY~RSaeQCr~KWKN 135 (398)
..+|.+|-..|++.-.++.. .........+|+++++ ++ -..|+++|+++|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 47899999999998877533 1123356799999988 43 36899999999974
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=77.96 E-value=3.2 Score=43.11 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKW 133 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KW 133 (398)
+....||.+|..++++....+ . +-|..||+.+. .||..||+.=+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y----G------kdw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY----G------RDFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH----T------TCHHHHHHHHS----SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH----C------cCHHHHHHHhC----CCCHHHHHHHH
Confidence 557899999999999877653 1 23999999875 58999999743
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=59.87 E-value=17 Score=30.01 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhcc
Q 015940 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLKEFKKTKH 145 (398)
Q Consensus 79 ~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkG-Y~RSaeQCr~KWKNLKK~YKKIKd 145 (398)
..||.+||..|+++..+.+-+ |--|+.+..-.+ ..||.++.+.++-.+.+...+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 379999999999999986544 344444443222 358888888888887776666553
No 47
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=55.32 E-value=30 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=39.4
Q ss_pred eeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 277 RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 277 ~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|..|- +.+|-+|.+..
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 71 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYK--ILGGSVLHLVL 71 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 344456788999999999999876665444432 2466688898884 45777776643
No 48
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.76 E-value=40 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHH-HHHcCCCCCHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAK-MREKGFDRSPTMCT 130 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAek-MaEkGY~RSaeQCr 130 (398)
.|......||.+|..++.+....+-. -|..|+.. |. .+|..||-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK----------df~~I~~~~v~----~Kt~~~~v 48 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK----------NFFRIRKELLP----NKETGELI 48 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS----------CHHHHHHHSCT----TSCHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc----------cHHHHHHHHcC----CCcHHHHH
Confidence 45555689999999888776654211 28888875 32 48999995
No 49
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=50.52 E-value=46 Score=23.71 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=38.1
Q ss_pred eeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 277 RRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 277 ~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
-.+.-+-|-..+|+.|...+++-..+--++-.. +.|+-+.+|..|- +.+|-+|.+.
T Consensus 15 i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~ 70 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQRESTLHLV 70 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 344456688999999999999876654444332 2356678888884 4567777654
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.89 E-value=69 Score=25.30 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.3
Q ss_pred eEEEEeec--ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 266 KVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 266 ~~~~~~~~--~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|.||+- .++-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|.|..
T Consensus 18 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 87 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 87 (106)
T ss_dssp EEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETT----EECCTTSCHHHHT--CCTTEEEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcC--CCCCCEEEEEE
Confidence 44677763 355556667889999999999999876665554432 3466678888885 45787777654
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=35.49 E-value=97 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=31.1
Q ss_pred ceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcce
Q 015940 276 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNY 325 (398)
Q Consensus 276 t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
+-++.-+-|-..+|+.|...+++-..+--++-.. +.|+-+..|..|
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g----~~L~d~~tL~~~ 59 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDY 59 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEECC----eECcCcccHHHh
Confidence 3344556788999999999999876554443322 235667777777
No 52
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=34.95 E-value=90 Score=22.85 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=39.9
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|.|.+
T Consensus 19 ~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 74 (85)
T 3n3k_B 19 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IHNHSALYLLL 74 (85)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EECCCCcHHHHHHHHHHHHCCCHHHEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 34456688999999999999877765544432 3467788898884 56777777643
No 53
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=34.53 E-value=96 Score=23.90 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=40.1
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 341 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|-+..-.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~~~ 73 (98)
T 1yx5_B 16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVLRL 73 (98)
T ss_dssp ECCTTCBHHHHHHHHHHHTCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEECC
T ss_pred EECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEEeC
Confidence 34445678999999999998876655444432 2456688899884 4578787765543
No 54
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=34.15 E-value=15 Score=31.28 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=29.9
Q ss_pred hhcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecCC
Q 015940 295 AFGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDE 342 (398)
Q Consensus 295 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (398)
-|.+|| ||-+-+.+.+++|+.|- .|+|.+|+.|+|.++|.
T Consensus 79 qFE~RthKRlIdI~~~~~tv~~l~--------~l~lp~GV~ieI~i~~~ 119 (120)
T 2xzm_J 79 RFEMRIYKRIIDLTCNVPDVKTIT--------NFRIDPGVEIELTMTAD 119 (120)
T ss_dssp EEEEEEEEEEEEEEECHHHHHHHS--------CSCCCSSEEEEEEEEC-
T ss_pred heEEEEEEEEEEEeCCcHHHHHHH--------cCcCCCCCEEEEEEecc
Confidence 467777 56666777777888872 46788999999998874
No 55
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=32.93 E-value=1.2e+02 Score=21.79 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=41.3
Q ss_pred EEEeeccc--ceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 268 ISVKCGDY--TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 268 ~~~~~~~~--t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
|.||++.- +-.+.-+-|-..+|+.|...+++-..+--.+-.- +.|+-|.+|+.|- +.+|-+|-|.
T Consensus 7 i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~ 73 (77)
T 2bwf_A 7 IHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESYH--IQDGHSVHLV 73 (77)
T ss_dssp EEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEE
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECC----eEcCCCCCHHHcC--CCCCCEEEEE
Confidence 45554322 2233445688999999999999866554443322 3466678898885 4577777653
No 56
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=32.88 E-value=1.2e+02 Score=22.98 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=40.7
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|-|.+
T Consensus 17 ~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~i~l~~ 72 (96)
T 3k9o_B 17 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 72 (96)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred EECCCCCHHHHHHHHHhhhCCChhHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 34445678999999999999987776555432 3467788999985 46777777764
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=32.71 E-value=81 Score=23.62 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=45.5
Q ss_pred EEEEeec---ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 267 VISVKCG---DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 267 ~~~~~~~---~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
-|.||+- .++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|+.|-+ +|-+|.+.+
T Consensus 19 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~i---~g~~i~lv~ 87 (88)
T 4eew_A 19 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVE 87 (88)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----EECCCCCcHHHcCC---CCcEEEEEE
Confidence 4667762 223345556688999999999999877766554422 34666889999866 488887754
No 58
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=32.69 E-value=32 Score=26.32 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 015940 126 PTMCTDKWRNLLKEFKKTKHQ 146 (398)
Q Consensus 126 aeQCr~KWKNLKK~YKKIKd~ 146 (398)
+..|+.||+||..-|+.+-..
T Consensus 13 srk~rakfkn~lqh~r~vaaa 33 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVAAA 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999988543
No 59
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=31.49 E-value=1.1e+02 Score=22.34 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=38.1
Q ss_pred ccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 281 IDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 281 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.|- +.+|-+|.+.+
T Consensus 23 ~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~l~l~~ 75 (79)
T 3phx_B 23 LTQTVAHLKQQVSGLEGVQDDLFWLTFEG----KPLEDQLPLGEYG--LKPLSTVFMNL 75 (79)
T ss_dssp TTSBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred CcChHHHHHHHHHhhcCCCHHHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 34578999999999999877665554432 3466788899884 56777777653
No 60
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.44 E-value=14 Score=31.42 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=24.0
Q ss_pred hhcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 015940 295 AFGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 341 (398)
Q Consensus 295 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
-|.+|| ||-+-+.+.+++|+.|- .|+|.+|+.|+|.++|
T Consensus 79 qFE~RthKRlIdI~~~~~~v~~l~--------~~~lp~GV~ieI~i~~ 118 (119)
T 2zkq_j 79 RFQMRIHKRLIDLHSPSEIVKQIT--------SISIEPGVEVEVTIAD 118 (119)
T ss_dssp EEEEEEBCCCCCBCSCTHHHHHHH--------HCCCCSSEEEEEC---
T ss_pred heEeEEEEEEEEEeChHHHHHHHH--------cCcCCCCCEEEEEEec
Confidence 455665 45555555566666664 3677899999998876
No 61
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=31.26 E-value=1.1e+02 Score=22.40 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=39.1
Q ss_pred ecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 279 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 279 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|.|.+
T Consensus 20 v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~~ 74 (85)
T 3mtn_B 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKWSTLFLLL 74 (85)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTGGGT--CCTTCEEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 3445688999999999999877665444332 3467788899884 46777777643
No 62
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=30.60 E-value=88 Score=23.15 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=38.3
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|-|.
T Consensus 28 ~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~i~l~ 82 (88)
T 3dbh_I 28 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYK--ILGGSVLHLV 82 (88)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCCEEETT----EECCTTSBGGGGT--CCTTCEEEEC
T ss_pred EECCCCCHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 34445578999999999999876655444332 3466788899884 5677777664
No 63
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=30.04 E-value=64 Score=25.01 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=43.7
Q ss_pred eEEEEeecccceeecc--cCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 266 KVISVKCGDYTRRIGI--DGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 266 ~~~~~~~~~~t~r~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|.||+|. +-.+-| +-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|-|.+
T Consensus 20 m~I~Vk~g~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~y~--I~~gstI~lv~ 88 (93)
T 2l7r_A 20 MQLFVRAQE-LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG----APLEDEATLGQCG--VEALTTLEVAG 88 (93)
T ss_dssp CEEEEESSS-EEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETT----EECCTTSBHHHHT--CCSSCEEEEEC
T ss_pred EEEEEECCC-EEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 456788763 223333 4678899999999988765554444332 2466678888884 56777777653
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.64 E-value=80 Score=25.07 Aligned_cols=66 Identities=24% Similarity=0.383 Sum_probs=45.9
Q ss_pred EEEEeecccceeec--ccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 267 VISVKCGDYTRRIG--IDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 267 ~~~~~~~~~t~r~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
-|.||++.-+-.+- -+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.| .+.+|-+|-|.
T Consensus 30 ~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~--gI~~g~tI~lv 97 (101)
T 3m63_B 30 NIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESY--HIQDGHSVHLV 97 (101)
T ss_dssp CEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETT----EECCTTSBTTTT--TCCTTEEEEEC
T ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCcCcHHHC--CCCCCCEEEEE
Confidence 46788754444444 44578999999999999877765554432 456678889988 45678777664
No 65
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=28.48 E-value=1.2e+02 Score=23.29 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 015940 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (398)
Q Consensus 73 ~pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWK 134 (398)
++.+....||.+.-..++++....- ..+..++.|.+.|...| .|-.|++.-.-
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHLQ 54 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHLQ 54 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence 4556678999999999998887532 23467788888887655 67777776544
No 66
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=27.94 E-value=3.4 Score=33.08 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 015940 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (398)
Q Consensus 78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~K 132 (398)
+..||.+|-++|-.... .|. +-...-|+.||+.+- .||..+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa----~yp--~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALS----FTN--KDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTS----SSC--SSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHH----HCC--CCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 56899999988765543 232 223567999998765 3899999754
No 67
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.18 E-value=1.6e+02 Score=23.22 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCccCCCccccceEEEEeec--ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccC
Q 015940 242 PPWNWRDPPPGNGNLCGEGQSFGGKVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD 319 (398)
Q Consensus 242 ~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~--~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
-.|.|..+.+ . .--|.||.. .++-.+.-+-|-..+|+.|....++-..+--++-.- +.|+-+
T Consensus 14 ~~~~~~~~~~--~----------~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~ 77 (101)
T 2klc_A 14 RENLYFQGHP--K----------IMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAG----KILKDQ 77 (101)
T ss_dssp ---------C--C----------CEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETT----EEECTT
T ss_pred ccccccCCCC--C----------eEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCc
Confidence 3688887722 1 133555552 233345556789999999999998876654444332 346678
Q ss_pred CCCcceEEecCCCceeEEee
Q 015940 320 MPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~ 339 (398)
..|+.|- +.+|-+|-|..
T Consensus 78 ~tL~~~g--I~~g~~I~l~~ 95 (101)
T 2klc_A 78 DTLSQHG--IHDGLTVHLVI 95 (101)
T ss_dssp CCTGGGT--CCTTCEEEEEE
T ss_pred CcHHHcC--CCCCCEEEEEE
Confidence 8999985 46787777643
No 68
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=27.12 E-value=1.2e+02 Score=22.84 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=41.1
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 341 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|-+ +|-+|.+.+-.
T Consensus 21 ~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~d~~tL~~~~i---~g~~i~l~~~~ 77 (90)
T 4dwf_A 21 IVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVERA 77 (90)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEECC
T ss_pred EECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----eECCCCCCHHHcCC---CCcEEEEEecC
Confidence 34445688999999999999877665554432 34667889999976 48888876643
No 69
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=25.87 E-value=1.5e+02 Score=22.36 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=40.6
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
++.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|+.|- +.+|-+|-|.+
T Consensus 33 ~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 88 (91)
T 3v6c_B 33 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 88 (91)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTCBTGGGT--CCTTCEEEEEC
T ss_pred EECCCCCHHHHHHHHHhhhCCChhhEEEEECC----eECCCcCcHHHCC--CCCCCEEEEEE
Confidence 34456688999999999999877765444432 3477788999985 56787877753
No 70
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.84 E-value=1.1e+02 Score=22.86 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=45.8
Q ss_pred ceEEEEee--c--ccce-eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 265 GKVISVKC--G--DYTR-RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 265 g~~~~~~~--~--~~t~-r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
.--|.||. | .++- .+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|.+.+
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~~ 80 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRG----KQLENGYTLFDYD--VGLNDIIQLLV 80 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTCEEEEEE
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 34567776 5 2443 35556788999999999998876665554432 3456677888874 45777777654
No 71
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.67 E-value=1.5e+02 Score=22.57 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=39.1
Q ss_pred ecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 279 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 279 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..| .+.+|-+|-+.+
T Consensus 17 v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~--~i~~g~~l~l~~ 71 (88)
T 4fbj_B 17 IEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADY--KILGGSVLHLVL 71 (88)
T ss_dssp CCTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTTTT--TCCTTCEEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHCcChhHEEEEECC----eECCCCCcHHHc--CCCCCCEEEEEE
Confidence 3345578999999999999877665444322 346678899998 456787877754
No 72
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=24.53 E-value=1.1e+02 Score=26.41 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHH----cC--------CC-CCHHHHHHHHHHHHHH
Q 015940 82 VQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRE----KG--------FD-RSPTMCTDKWRNLLKE 139 (398)
Q Consensus 82 T~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaE----kG--------Y~-RSaeQCr~KWKNLKK~ 139 (398)
|-+|+..|+.....+...+......-..=..|+..|.+ .| |. .|......||++|.+-
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 57899999988777666665433333333334444544 33 43 6789999999999864
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=24.45 E-value=1.7e+02 Score=24.81 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=37.3
Q ss_pred eecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 278 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
++.-+-|-..+|+.|...+++-..+--++-.- +.|+.+..|..|- +.+|-+|.+.
T Consensus 36 ~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~ 90 (172)
T 3u30_A 36 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLV 90 (172)
T ss_dssp EECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEE
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHEEEEECC----ccccccCCHhHcC--Ccccceeeee
Confidence 44455688999999999999987766555432 4477788898884 2344444433
No 74
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.00 E-value=1.6e+02 Score=21.25 Aligned_cols=66 Identities=11% Similarity=0.276 Sum_probs=42.4
Q ss_pred EEEEee--cc-cceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 015940 267 VISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 338 (398)
Q Consensus 267 ~~~~~~--~~-~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (398)
-|.||. |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|+.|- +.+|-+|-+.
T Consensus 9 ~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~ 77 (81)
T 2dzi_A 9 QLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKG----KALADGKRLSDYS--IGPNSKLNLV 77 (81)
T ss_dssp EEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETT----EECCTTSBGGGGT--CCSSBCCEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 355553 22 34455567789999999999998866554444332 2356678888884 4567666553
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.57 E-value=2.1e+02 Score=23.05 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=46.2
Q ss_pred ceEEEEee--c-ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 265 GKVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 265 g~~~~~~~--~-~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
|..|.||. | .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|.+.+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 45566764 2 345556667788999999999988866555554432 3456677888884 45777777654
No 76
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.18 E-value=2.6e+02 Score=21.75 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH----HcCCC------CCHHHHHHHHHHHHHHHHHhcc
Q 015940 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMR----EKGFD------RSPTMCTDKWRNLLKEFKKTKH 145 (398)
Q Consensus 76 kRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMa----EkGY~------RSaeQCr~KWKNLKK~YKKIKd 145 (398)
.....|+..++..|-..|.. ........=++||+.|. +.|.. .+..|.+..|.|=....|+...
T Consensus 9 r~R~~ft~~ql~~Le~~F~~------~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNE------NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 33568999998888777765 23355566678888876 22222 8999999999998888877644
No 77
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=23.05 E-value=1.7e+02 Score=22.21 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=37.9
Q ss_pred ecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 279 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 279 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|-+..
T Consensus 26 v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 80 (88)
T 1sif_A 26 MEPSDTIENLKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 80 (88)
T ss_dssp CCTTSBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBSGGGT--CCTTCEEEEEC
T ss_pred ECCCChHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 3345688999999999998876655444332 2456688898885 45777776653
No 78
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=22.99 E-value=24 Score=28.58 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred Hhhcccc-cceeeccccc-hhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 294 SAFGIRT-KRAFWLEDED-QIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 294 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|-+|| ||-+-+.+.+ ++|+.| | .++|.+|+.|+|.+
T Consensus 59 eqfE~rthkRlIdi~~~~~~~v~~l---~-----~~~lp~GV~vev~~ 98 (98)
T 3r8n_J 59 DQYEIRTHLRLVDIVEPTEKTVDAL---M-----RLDLAAGVDVQISL 98 (98)
T ss_dssp EEEEEECBCCCCCBSCCCTTTTTTT---T-----TCCCCTTCEEECCC
T ss_pred HhEEEEEEEEEEEEeCCCHHHHHHH---H-----cCcCCCCcEEEEEC
Confidence 3577777 5677777776 477777 3 58889999998853
No 79
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.72 E-value=2.5e+02 Score=21.13 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 015940 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (398)
Q Consensus 74 pskRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIK 144 (398)
+.......|.+....|-..|.. ........=++||..| ..+..|++..|.|=...+|+.+
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~------~~yp~~~~r~~LA~~l-----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK------QKYLSTPDRIDLAESL-----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHh-----CCCHHHeeeccHHHHHHhhccc
Confidence 3344567899988888877754 1223444456677665 4789999999998877666543
No 80
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.62 E-value=3e+02 Score=22.66 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=45.4
Q ss_pred eEEEEeec--ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 266 KVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 266 ~~~~~~~~--~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|.||.. .++-.+--+-|-..+|+.|...+++-..+--.+-.- +.|+-|..|+.|-+ .+|-+|-|..
T Consensus 33 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~dygI--~~gstI~lv~ 102 (125)
T 1j8c_A 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAG----KILKDQDTLIQHGI--HDGLTVHLVI 102 (125)
T ss_dssp EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETT----EEESTTSCGGGTTC--SSSEEEEEEE
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECC----EEcCCCCCHHHcCC--CCCCEEEEEe
Confidence 45667763 233455556789999999999998866554443321 24666788888854 5788877654
No 81
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.00 E-value=2.3e+02 Score=20.43 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEEee--ccc--cee-ecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 267 VISVKC--GDY--TRR-IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 267 ~~~~~~--~~~--t~r-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
-|.||. |.- +=. +--+-|-..+|+.|....++-..+--++-.- +.|+-+..|+.|- +.+|-+|-+.+
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 75 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRG----KQMEDGHTLFDYE--VRLNDTIQLLV 75 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 456665 432 333 4456788999999999998866655444332 2366678888885 45777776653
No 82
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=21.18 E-value=28 Score=29.65 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=26.6
Q ss_pred hhcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 015940 295 AFGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 341 (398)
Q Consensus 295 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
-|.+|| ||-+-|.+-+++|+.|-+ |.|.+|+.|+|.+-|
T Consensus 81 qFE~RtHKRlIdI~~~~~~v~~l~~--------~~lp~GV~vei~i~~ 120 (121)
T 3u5c_U 81 TYEMRIHKRYIDLEAPVQIVKRITQ--------ITIEPGVDVEVVVAS 120 (121)
T ss_dssp EEEEEEEEEEEEECCCHHHHHHHHH--------SSCCTTCEEEECCSC
T ss_pred heEEEEEEEEEEecCCHHHHHHHHc--------CcCCCCCEEEEEEcC
Confidence 455665 556666666777777643 667889999987765
No 83
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.12 E-value=2.1e+02 Score=21.90 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=38.3
Q ss_pred eecccCChHHHHHHHHHhh---cccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 015940 278 RIGIDGTPDAIKEAIKSAF---GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 341 (398)
Q Consensus 278 r~g~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (398)
.+.-+-|-..+|+.|...+ ++-..+--++-.- +.|+-|..|+.|- +.+|-+|-|..-.
T Consensus 16 ~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~G----k~L~D~~tL~~yg--I~~g~~i~l~~~~ 76 (95)
T 1uel_A 16 DIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG----KILNDDTALKEYK--IDEKNFVVVMVTK 76 (95)
T ss_dssp ECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT----EECCTTSBGGGGT--CCSSSEEEEEESS
T ss_pred EECCCCHHHHHHHHHHhhcccCCCChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEEeC
Confidence 4445678899999999985 4544443333221 3466678899884 5688888876644
No 84
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.96 E-value=1.9e+02 Score=22.49 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=47.8
Q ss_pred cccc-ceEEEEeecc--cceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccC-CCCcceEEecCCCceeE
Q 015940 261 QSFG-GKVISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD-MPVGNYTLHLDEGLTIK 336 (398)
Q Consensus 261 ~~~~-g~~~~~~~~~--~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 336 (398)
|.|. .--|.||+.. ++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-| ..|+.|- +.+|-+|-
T Consensus 10 ~~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~~tL~~yg--I~~gstl~ 83 (94)
T 2kan_A 10 HAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG----IELADDYRNLNEYG--ITEFSEIV 83 (94)
T ss_dssp CSSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETT----EEECCTTSBHHHHT--CCTTEEEE
T ss_pred ccCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----EECCCCcccHHHCC--CCCCCEEE
Confidence 4444 4458888864 55555666788999999999998866654443321 345556 7888885 45777766
Q ss_pred Ee
Q 015940 337 VC 338 (398)
Q Consensus 337 ~~ 338 (398)
|.
T Consensus 84 lv 85 (94)
T 2kan_A 84 VF 85 (94)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 85
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.69 E-value=1.5e+02 Score=21.93 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=43.4
Q ss_pred eEEEEee--cc-cceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 266 KVISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 266 ~~~~~~~--~~-~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|.||. |. ++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-|..|..|- +.+|-+|.|..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G----k~L~d~~tL~~~~--i~~g~~i~l~~ 78 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG----QVLQDWLGLGIYG--IQDSDTLILSK 78 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC----EEccCCCCHHHCC--CCCCCEEEEEE
Confidence 3456665 21 23344556788999999999988766554444332 2356677888774 45777776654
No 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=20.67 E-value=1.4e+02 Score=23.60 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=44.5
Q ss_pred eEEEEeec--ccceeecccCChHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 015940 266 KVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 339 (398)
Q Consensus 266 ~~~~~~~~--~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (398)
--|.||+. .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|-|..
T Consensus 23 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~yg--I~~gstI~l~~ 92 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 92 (100)
T ss_dssp EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBHHHHT--CCTTCEEEEEE
T ss_pred EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEE
Confidence 34666653 344445556788999999999998766554443322 3456677888884 46777777654
No 87
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=20.32 E-value=25 Score=31.24 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.2
Q ss_pred cCCCCcceEEecCCCcee
Q 015940 318 RDMPVGNYTLHLDEGLTI 335 (398)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~ 335 (398)
-+-|-|+|||+||-|.=+
T Consensus 130 t~~ptG~YTLnL~GGyW~ 147 (148)
T 1ut1_A 130 TNTPPGNYTLTLTGGYWA 147 (148)
T ss_dssp TTCCSEEEEEEEEEEEEE
T ss_pred ccCCCccEEEEecccEec
Confidence 478999999999988644
Done!