BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015941
(398 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 305/402 (75%), Positives = 335/402 (83%), Gaps = 25/402 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS QFQALR MVQANPQI
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQIL 281
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
LQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE
Sbjct: 282 QPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERE 339
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 340 SIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 381
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/402 (75%), Positives = 331/402 (82%), Gaps = 25/402 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K KVS SG ST S+AP +QAQ S+ PP++TQP+TT+Q PA T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES P PVSS +D+YGQAASNLVAGSNLEATVQQIL
Sbjct: 121 LPQSAAES-----------------TPVVNPVSSETDIYGQAASNLVAGSNLEATVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P A
Sbjct: 164 DMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPSA--T 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQQFQALR MVQANPQI
Sbjct: 222 AQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQQFQALRAMVQANPQIL 280
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
LQELGKQNPHLMRLIQEHQ DFLRLINEPVE G+GN+LGQLASA+PQ+V+VTPEERE
Sbjct: 281 QPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GDGNLLGQLASAVPQSVSVTPEERE 339
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMH+FE+
Sbjct: 340 AIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHDFEE 381
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/408 (73%), Positives = 331/408 (81%), Gaps = 33/408 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+SF VVML+KSKVSS G ST AAPA+QA SS P TQP+ TSQ P P A
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---SDVYGQAASNLVAGSNLEATVQ 177
PQS ES+P A V+S +++YGQAASNLVAGSNLEAT+Q
Sbjct: 121 LPQSAAESSP-------------------AVVTSALLDTNMYGQAASNLVAGSNLEATIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGN 234
+ILDMGGG W+RETV+RALRAA+NNPERA++YLYSGIPEQ VPPVA+ G G A N
Sbjct: 162 EILDMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVN 221
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
PPA A QP AP SGPNANPLDLFPQG + GSNAG G LDFLRNSQQFQALR MVQ
Sbjct: 222 PPAL--APQPVV-APNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQ 278
Query: 295 ANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 350
ANPQI LQELGKQNP+LMRLIQEHQ DFLRLINEPVE GEGNVLGQLASAMPQAVTV
Sbjct: 279 ANPQILQPMLQELGKQNPYLMRLIQEHQADFLRLINEPVE-GEGNVLGQLASAMPQAVTV 337
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TPEEREAIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 338 TPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDE 385
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/398 (72%), Positives = 320/398 (80%), Gaps = 37/398 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +PE PAPA AP+ +SS SD+YGQAASNLVAG+NLE T+QQIL
Sbjct: 119 LPEVIPE-------PAPAVAPS---------ISSDSDIYGQAASNLVAGNNLEVTIQQIL 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 163 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA- 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 222 PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP---------------- 265
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 360
QELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEERE+IER
Sbjct: 266 QELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEERESIER 323
Query: 361 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 324 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 361
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/433 (70%), Positives = 337/433 (77%), Gaps = 51/433 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+VVML KSK +S+GAS+ SA S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAG----TSQAKSTPPSTSQPSISPQTPASVAA 116
Query: 118 -----------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS 154
TV P +PE P PA P+ PAP AP S
Sbjct: 117 PVAPAPTRAPPPAPTPAPVAATETVTTP--IPE-------PVPATIPSSTPAPDSAPAGS 167
Query: 155 VSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+GI
Sbjct: 168 QGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGI 227
Query: 215 PEQTAVPPVARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
PEQ VPPVARA A GQ NP AQT QQPAA AP SGPNANPLDLFPQGLPN+G N G
Sbjct: 228 PEQAEVPPVARAPASFGQPANPSAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGNPG 284
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPV 329
AGTLDFLRNSQQFQALR MVQANPQ+ LQELGKQNP+LMRLIQ+HQ DFLRLINEPV
Sbjct: 285 AGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPV 344
Query: 330 EGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
EGG GN+LGQ+A+ M PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA
Sbjct: 345 EGGGESGNLLGQMAAGMPQPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 404
Query: 386 ANYLLDHMHEFED 398
ANYLLDHMHEFE+
Sbjct: 405 ANYLLDHMHEFEE 417
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/410 (73%), Positives = 327/410 (79%), Gaps = 33/410 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVSS+G S++SAA +N AQ S + Q T TP T A
Sbjct: 61 ENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQPDGS----TDQARQTITTPQATAA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQS ES AP PAP PA SSV+DVY QAASNLVAGSNLE TVQQIL
Sbjct: 117 LPQSASES-------------APTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------PPVARASAGGQA 232
DMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIPEQT + P A A QA
Sbjct: 164 DMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQA 223
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
NP AQ +Q P+SGPNANPLDLFPQGL N GSNAGAG LDFLRNS QFQALR M
Sbjct: 224 INPAAQDASQ---LAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRAM 280
Query: 293 VQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 348
VQANPQI LQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQ A A+PQAV
Sbjct: 281 VQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQTAGAIPQAV 339
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+HEF++
Sbjct: 340 TVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE 389
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/404 (70%), Positives = 322/404 (79%), Gaps = 9/404 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 297
Query: 299 ILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
ILQ ELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEE
Sbjct: 298 ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEE 357
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
R+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 358 RQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 401
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 305/406 (75%), Positives = 331/406 (81%), Gaps = 14/406 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K+K SS ST S AP+ + SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAK----PSATPTSTSVSTAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PPV A Q NPPA
Sbjct: 176 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPAD 235
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQAN
Sbjct: 236 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 294
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
PQILQ ELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA MPQAVTVTP
Sbjct: 295 PQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGTMPQAVTVTP 354
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EER+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 355 EERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 400
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/435 (68%), Positives = 339/435 (77%), Gaps = 53/435 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE 327
GAGTLDFLRNSQQFQALR MVQANPQ+ LQELGKQNP+LMRLIQ+HQ DFLRLINE
Sbjct: 285 PGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINE 344
Query: 328 PVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
PVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEE
Sbjct: 345 PVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEE 404
Query: 384 LAANYLLDHMHEFED 398
LAANYLLDHMHEFE+
Sbjct: 405 LAANYLLDHMHEFEE 419
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 301/403 (74%), Positives = 327/403 (81%), Gaps = 16/403 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K+K SS ST S AP+ +A SA PTST + Q PA T A
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKA----SATPTSTSVSAAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P V A P +A APAP + + P SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPE-------SDIYGQAASNLVAGSNLEGTIQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PPV R A Q NPPA
Sbjct: 170 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAAP 229
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 230 QAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQI 289
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLASAMPQAVTVTPEER
Sbjct: 290 LQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEER 349
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 350 QAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 392
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/409 (72%), Positives = 327/409 (79%), Gaps = 36/409 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ----TTSSAPPT--STQPTTTSQ 113
+E+KVAENSF+VVML+KSKVSS G ST +AAP N + T ++APPT S QPT+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLVSAQPTS--- 117
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
S+P + P++ + A PA A + A D+YGQAASNLVAGSNLE
Sbjct: 118 ----------SLPSNVTQPSSTSQAAVPAAAFSDA--------DMYGQAASNLVAGSNLE 159
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
AT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSGIPEQ VPPVA+ A G A
Sbjct: 160 ATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVAV 219
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N Q A P+ GPNANPLDLFPQGLP+ GSNAGAG LDFLRNSQQFQALR MV
Sbjct: 220 N---PPAQAQQPAAPPSGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQQFQALRAMV 276
Query: 294 QANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 349
QANPQI LQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQLASA+PQ VT
Sbjct: 277 QANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQLASAVPQTVT 335
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTPEEREAI+RL AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 336 VTPEEREAIDRLVAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFDE 384
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/408 (70%), Positives = 323/408 (79%), Gaps = 11/408 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTS----SAPPTSTQPTTTSQTPA 116
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS S PP S P ++ PA
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P A ++P S P + + SD+YGQAASNLVAGSNLE T+
Sbjct: 121 PAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VA+ A Q NPP
Sbjct: 181 QQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPP 240
Query: 237 AQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQ 294
A Q QPA P ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQ
Sbjct: 241 ADAPQTAQPA-PVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQ 299
Query: 295 ANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 350
ANPQILQ ELGKQNPHLMRLI++HQ DFLRLINEP EG EGN+LGQ+ASAMPQAVTV
Sbjct: 300 ANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVTV 359
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 360 TPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 407
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/435 (68%), Positives = 338/435 (77%), Gaps = 54/435 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 226
Query: 213 GIPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR ++ GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 227 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 283
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE 327
GAGTLDFLRNSQQFQALR MVQANPQ+ LQELGKQNP+LMRLIQ+HQ DFLRLINE
Sbjct: 284 PGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINE 343
Query: 328 PVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
PVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEE
Sbjct: 344 PVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEE 403
Query: 384 LAANYLLDHMHEFED 398
LAANYLLDHMHEFE+
Sbjct: 404 LAANYLLDHMHEFEE 418
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/403 (70%), Positives = 312/403 (77%), Gaps = 11/403 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEI+VKPED V+DVK NIE VQGSDVYPASQQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF V++ SK +S + ++ A + P + +
Sbjct: 61 ENKVAENSF--VVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTL 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P A + V S +D YGQAASNLVAG+N E +QQIL
Sbjct: 119 TAPQAP-VVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQIL 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVARA A GQA NPPAQ+Q
Sbjct: 178 DMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQ 237
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
QP PAP+SGPNANPLDLFPQG+PN+GSN AGAGTLDFLRNSQQFQALR MVQANPQI
Sbjct: 238 --QPV-PAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQI 294
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQ ELGKQNP LMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA+AMPQAVTVTPEER
Sbjct: 295 LQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEER 354
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 355 EAIARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/406 (73%), Positives = 320/406 (78%), Gaps = 32/406 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKP----------------------SATPTSTSVSTAPQAPASTGA 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQAASNLVAGSNLEATVQQ 178
V PA APAPAPAP + SSV SD+YGQAASNLVAGSNLE T+QQ
Sbjct: 99 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSG-SSVPESDIYGQAASNLVAGSNLEGTIQQ 157
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
ILDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PV A Q NPPA
Sbjct: 158 ILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPAD 217
Query: 239 T-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQAN 296
T QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQAN
Sbjct: 218 TPQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQAN 276
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
PQILQ ELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA AMPQAVTVTP
Sbjct: 277 PQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTP 336
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EER+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 337 EERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 382
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/402 (75%), Positives = 331/402 (82%), Gaps = 22/402 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + AP +APAPAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATAASVAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A S GQA NPP Q
Sbjct: 170 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPVS--GQAVNPP--VQ 225
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A PA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQI
Sbjct: 226 ASPPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 283
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
LQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEERE
Sbjct: 284 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEERE 342
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AIERLEAMGFDRALVL+VFFACNKNEE+AANYLLDHMHEF++
Sbjct: 343 AIERLEAMGFDRALVLQVFFACNKNEEMAANYLLDHMHEFDE 384
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/403 (69%), Positives = 316/403 (78%), Gaps = 10/403 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ++ P + AP A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPAST--PPVSVAPQAPAPA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 119 ATGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 178
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 179 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q QPAA ++GPNANPLDLFPQ + AGAG+LDFLRNSQQFQALR MVQANPQI
Sbjct: 239 QTAQPAA-VTSAGPNANPLDLFPQ--VAISGAAGAGSLDFLRNSQQFQALRAMVQANPQI 295
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQ ELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEER
Sbjct: 296 LQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEER 355
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 356 QAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 398
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/402 (74%), Positives = 330/402 (82%), Gaps = 24/402 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ PA APAPAPAPAPAPAPA + ++DVYGQAASNLVAGS LE TVQQIL
Sbjct: 110 PQATA--ASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP Q
Sbjct: 168 DMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--VQ 223
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A QPA P+ GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQI
Sbjct: 224 ASQPA--VPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQIL 281
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
LQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEERE
Sbjct: 282 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEERE 340
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AIERLEAMGFDRALVL+VFFAC KNEE+AANYLLDHMHEF++
Sbjct: 341 AIERLEAMGFDRALVLQVFFACXKNEEMAANYLLDHMHEFDE 382
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/404 (68%), Positives = 309/404 (76%), Gaps = 30/404 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+K+ STV A S PP S P + +
Sbjct: 61 ENKVAENTFIVIMLSKT-------STVPA----------STPPVSVAPQAPAPAATGALP 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + SD+YGQAASNLVAGSNLE T+QQIL
Sbjct: 104 ------ASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 158 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAP 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 218 QTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 276
Query: 299 ILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
ILQ ELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEE
Sbjct: 277 ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEE 336
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
R+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 337 RQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 380
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/406 (71%), Positives = 325/406 (80%), Gaps = 31/406 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAE SF+V+ML+KS +S + +A+ P QA AP STQP+T+ QTPAP
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQA---PPAPLASTQPSTSPQTPAPV 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P + + APAP + +D+YGQAASNLVAGSNLEAT+QQ
Sbjct: 118 AMPQAAPETAP------------------APAPAVTQTDIYGQAASNLVAGSNLEATIQQ 159
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPPA 237
ILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA+A ++GGQ N
Sbjct: 160 ILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTN--P 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q A APTSGPNANPLDLFPQGLPN+GSN GAGTLDFLRNSQQFQALR MVQANP
Sbjct: 218 PAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFLRNSQQFQALRAMVQANP 277
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTP 352
QI LQELGKQNP LMRLIQEHQ DFLRLINEPVEGGE GN+ QL AMPQA+ VTP
Sbjct: 278 QILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGGNISSQLGGAMPQAIQVTP 337
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EEREAIERLEAMGF+R LVLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 338 EEREAIERLEAMGFERGLVLEVFFACNKNEELAANYLLDHMHEFDE 383
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 301/424 (70%), Positives = 329/424 (77%), Gaps = 41/424 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+MLTK+K S+ ST S A +T+ AP T PA T+A
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTA------STTKAPQTII--------PA-TIA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----------------SDVYGQAA 163
PP VP SA P APAP PA APAPA APAP + DVYGQAA
Sbjct: 106 PPAPVPTSALPAPAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAA 165
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
SNLVAG+NLE +QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPV
Sbjct: 166 SNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPV 225
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----TLD 278
A S GQA N PAQ Q A P+ GPNANPLDLFPQGLPNMGS TLD
Sbjct: 226 APVSLSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLD 285
Query: 279 FLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FLRNSQQFQALR MVQANPQILQ ELGKQNP+L+RLIQEHQTDFLRLINEPVEGGEG
Sbjct: 286 FLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLINEPVEGGEG 345
Query: 335 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394
N++GQLA+AMPQAVTVTPEEREAIERLEAMGFDR LVLEVFFACNKNEELAANYLLDHMH
Sbjct: 346 NIMGQLAAAMPQAVTVTPEEREAIERLEAMGFDRGLVLEVFFACNKNEELAANYLLDHMH 405
Query: 395 EFED 398
EFED
Sbjct: 406 EFED 409
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 289/405 (71%), Positives = 310/405 (76%), Gaps = 34/405 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+K SS ST SAAP P T PT
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT---------PKVITLPT----------- 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SVP S P APAPAPAP + + S VYGQAASNLVAG+NLE VQQIL
Sbjct: 101 ---SVP-SPAPAPAPAPAPAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ PPVA+ QA PA
Sbjct: 157 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQA---PAAQP 213
Query: 241 AQQPAAP--APTSGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQFQALRTMVQANP 297
QQPA P P GPNANPLDLFPQGLPN+GS A AGTLDFLRNSQQFQALR MVQANP
Sbjct: 214 RQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQANP 273
Query: 298 QILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
QILQ ELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGNV G LA+AMPQ+VTVTPE
Sbjct: 274 QILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTPE 333
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EREAIERL AMGFD ALVLEV+FACNKNEELAANYLLDH+HEFED
Sbjct: 334 EREAIERLGAMGFDPALVLEVYFACNKNEELAANYLLDHIHEFED 378
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 281/403 (69%), Positives = 312/403 (77%), Gaps = 31/403 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 335 EAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 280/403 (69%), Positives = 311/403 (77%), Gaps = 31/403 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNS QFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSHQFQALRAMVQANPQI 275
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 335 EAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/402 (70%), Positives = 314/402 (78%), Gaps = 30/402 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+KVSSSGAST S+ P++TQ A TVA
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGAST-----------ASAPAPSATQ--------AQTVA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ SAP + P P A A APA A +DVYGQAASNLVAG+ LE+TVQQIL
Sbjct: 101 TPQV---SAPTVSVPEPTSGTATAAAPAAAAAVQ-TDVYGQAASNLVAGTTLESTVQQIL 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A + G+ Q Q
Sbjct: 157 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQPA-NPQAQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
QQ A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ+FQALR MVQANPQI
Sbjct: 216 PQQAAPVAATGGPNANPLNLFPQGMPAADAAAGAGNLDFLRNSQKFQALRAMVQANPQIL 275
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
LQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEERE
Sbjct: 276 QPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEERE 334
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 335 AIERLEAMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 376
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 265/402 (65%), Positives = 300/402 (74%), Gaps = 25/402 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAENSF+V+ML+KSK S ST S A A +A T SAPP+ PAP V
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQT-SAPPS---------VPAPAV- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P ++ P A V S ++VY AAS LVAGSNLE +QQIL
Sbjct: 110 ---SQPPASTLPVPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQIL 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TVIR +RAA+NNPERAVEYLYSGIPEQ PPVA + GQA NP Q
Sbjct: 167 DMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPP 226
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQI 299
A APA PNANPLDLFPQGLP+MGSN AGAG LDFLR +QQFQALR MVQ+NPQI
Sbjct: 227 AAAQPAPASAG-PNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQI 285
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQELGKQNPHLMRLIQEHQ DFL+LINEP+EGGE N+LG PQA++VTPEER
Sbjct: 286 LQPMLQELGKQNPHLMRLIQEHQADFLQLINEPMEGGE-NLLGH----GPQAISVTPEER 340
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
+AIERLEAMGFDR LVLEVFFACNKNEELAANYLLDHMHEFE
Sbjct: 341 DAIERLEAMGFDRELVLEVFFACNKNEELAANYLLDHMHEFE 382
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 263/403 (65%), Positives = 300/403 (74%), Gaps = 32/403 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAE+SFVV+ML+K+KVSSSGAST +AA ++ P S+ P T+S PT A
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAA---PPNPVTAPQPASSVPPTSSTPEPPTSA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q S P P A VS VYGQAASNL+AGSN++ TVQQIL
Sbjct: 118 VGQGASNSEQSPVITPPTAA--------------VSSVYGQAASNLIAGSNVDPTVQQIL 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ VP VAR+ + GQA NP
Sbjct: 164 EMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSV--- 220
Query: 241 AQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+P PA PT GPN NPL+LFPQG+PNMG+ AG LDFLRN+QQFQALR MVQANPQI
Sbjct: 221 --RPPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQI 278
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQELGKQNPHLM+LIQEHQ+DFL LINEP EG E LA+ M QA+TVTPEE
Sbjct: 279 LQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEE----NPLAAGMTQAITVTPEED 333
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI+RLE MGFDR LVLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 334 EAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD 376
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 254/406 (62%), Positives = 299/406 (73%), Gaps = 26/406 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTP 352
QI LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTP
Sbjct: 283 QILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTP 342
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 343 EENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 253/406 (62%), Positives = 297/406 (73%), Gaps = 26/406 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP +VP + +AP P +PAPA A VSS +D YGQA SNLVAGSNLEAT+Q I
Sbjct: 112 APATTVPVTV---SAPTPTATASPAPAVA---VSSEADNYGQATSNLVAGSNLEATIQSI 165
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP +
Sbjct: 166 LEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQAS 222
Query: 240 QAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQANP
Sbjct: 223 QATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANP 282
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVTP 352
QI LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTP
Sbjct: 283 QILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTP 342
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EE EAI RLE MGFDRALVL+VFFACNK+E+LAANYLLDHM+EF D
Sbjct: 343 EEDEAILRLEPMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFAD 388
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/409 (58%), Positives = 292/409 (71%), Gaps = 30/409 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+N++ EN F+VVMLTK+K SS+ ++ +++ + T +S P +A
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP----------------LA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + E+A P + PA APA + AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 105 PASNPVEAASPVVSQPPAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVAR-----ASAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR + A GQ
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A P+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 349
QANPQI LQEL KQNP LMRLIQ+HQ +FL LINE EG++LGQ A+ MPQ++
Sbjct: 285 QANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---EGDLLGQFAAEMPQSIN 341
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTPEEREAIERLEAMGFDRALV+E F AC+KNEELAANYLL+H ++ED
Sbjct: 342 VTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/409 (59%), Positives = 289/409 (70%), Gaps = 30/409 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS-GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+N + EN F+VVMLTKSK SS+ GAS+ S A ++ QPT TS PAP
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTA-------------STVQPTQTSTPPAPAS 107
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P V ++P + A AP V + +D YG+AAS LVAGSNLE T+QQ+
Sbjct: 108 NP---VEVASPVVSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQAG 233
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q
Sbjct: 165 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGT 224
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
N ++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTMV
Sbjct: 225 NNVIAGESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMV 284
Query: 294 QANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 349
QANPQI LQEL KQNP LMRLIQ+HQ +FL LINE +G++LGQ A+ MPQ++
Sbjct: 285 QANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---DGDLLGQFAAEMPQSIN 341
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTPEEREAIERLEAMGFDRALV+E F AC+KNEELAANYLL+H ++ED
Sbjct: 342 VTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/406 (60%), Positives = 293/406 (72%), Gaps = 23/406 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
E+KV EN+F+V+ML ++K SSS A S P+NQ APPT T P SQ P
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 115 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 172 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 225
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 285
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 352
QI LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 286 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 345
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EE EAI RLE MGFDRALVLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 346 EENEAILRLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 391
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 261/418 (62%), Positives = 306/418 (73%), Gaps = 27/418 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-TTSSAPPTSTQPTT-TSQTPAPT 118
N VAENSF+V+ML+K+K S SG ST S AP QAQ T A T + P T ++TP T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S E APP A P PA + PA A S +DVY QAASNLV+G +LE TVQ
Sbjct: 121 A--PVSASELAPPSAQP-PAGSDIPA---AAVTASGDADVYSQAASNLVSGGSLEQTVQH 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGNPPA 237
ILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA NP A
Sbjct: 175 ILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQA 234
Query: 238 QTQAQ-----QPAAPAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQF 286
+QA QP+ A ++GPNANPL+LFPQG+P GSN AGAG LD LR QF
Sbjct: 235 LSQAAPVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQF 293
Query: 287 QALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGNVLGQLA 341
QAL +VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE P G GN+LGQLA
Sbjct: 294 QALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAAGNILGQLA 353
Query: 342 SAMPQ-AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+AMPQ AVTVTPEERE+I+RLEAMGF+R LVLEVFFACN++EELAANYLLDH HE+ED
Sbjct: 354 AAMPQAAVTVTPEERESIQRLEAMGFNRELVLEVFFACNRDEELAANYLLDHGHEYED 411
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 247/407 (60%), Positives = 271/407 (66%), Gaps = 79/407 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDS-------------------------------------- 22
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
VV + K+ S GA PA + + T T TP P
Sbjct: 23 ----------VVDVKKNIESVQGADVY---PAAKQMLIHQGKVLKDETTETVTTPIPE-- 67
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + PAP APV S DVYGQAASNL AGSNLE+T+QQIL
Sbjct: 68 --------------PVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQIL 113
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR-ASAGGQAGNPPAQT 239
DMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR ++ GQ NPPAQT
Sbjct: 114 DMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQT 173
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
QQPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ+
Sbjct: 174 --QQPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQV 230
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVT 351
LQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ VT
Sbjct: 231 LQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVT 290
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 291 HEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 337
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 250/414 (60%), Positives = 297/414 (71%), Gaps = 28/414 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 344
+VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 349 PQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 265/433 (61%), Positives = 306/433 (70%), Gaps = 57/433 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE 327
AGAG LD LR QFQAL +VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 328 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
+ G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLEVFFACNK+EELA
Sbjct: 339 SPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELA 398
Query: 386 ANYLLDHMHEFED 398
ANYLLDH HEFED
Sbjct: 399 ANYLLDHGHEFED 411
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 265/433 (61%), Positives = 306/433 (70%), Gaps = 57/433 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA---------------PAPAPVSSVSDVYGQAASN 165
PPP AP P PAP A A SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 224
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 271
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE 327
AGAG LD LR QFQAL +VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 328 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
+ G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLEVFFACNK+EELA
Sbjct: 339 SPDSGTAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELA 398
Query: 386 ANYLLDHMHEFED 398
ANYLLDH HEFED
Sbjct: 399 ANYLLDHGHEFED 411
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/399 (63%), Positives = 284/399 (71%), Gaps = 58/399 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 359
LQ + +QE QL +AMPQAVTVTPEEREAIE
Sbjct: 276 LQPM----------LQE----------------------QLEAAMPQAVTVTPEEREAIE 303
Query: 360 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
RLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 304 RLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 342
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/424 (58%), Positives = 284/424 (66%), Gaps = 47/424 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+VVML+K+K +++G S+ AP S P Q A
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSSTQQAP-------PSVSPAPAQNPVAPVPAAAAAQ 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +A P A A DVYGQAASNLVAG+NLE +QQIL
Sbjct: 114 LSSLAPATATPTAGAGTTQTDA--------------DVYGQAASNLVAGNNLEHVIQQIL 159
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR-----ASAGGQAGN 234
DMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE V PPVAR A
Sbjct: 160 DMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAP 219
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN----------------MGSNAGAGTLD 278
PA A A+ +GPNA PLDLFPQGLPN G+ AGAG LD
Sbjct: 220 APAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALD 279
Query: 279 FLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FLRN+ QFQALRTMVQANPQI LQEL KQNP LMRLIQ+HQ DFLRL+NEPVEG EG
Sbjct: 280 FLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEG 339
Query: 335 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394
+ QLA AMPQA+ VTPEEREAIERLEAMGFDRALV+E F AC+KNE+LAANYLL+H
Sbjct: 340 DFFNQLAGAMPQAINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEQLAANYLLEHAG 399
Query: 395 EFED 398
++ED
Sbjct: 400 DYED 403
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/412 (59%), Positives = 291/412 (70%), Gaps = 27/412 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 346
++VQANPQILQ ELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MPQ
Sbjct: 288 SLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQ 347
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 348 TVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 399
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/402 (59%), Positives = 284/402 (70%), Gaps = 19/402 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K K S+S AS + P Q +AP QTP
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTPV---- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SAP P PA A A S+ +D YGQAAS+LVAGSNLE TVQ IL
Sbjct: 116 ----TPVSAP---VPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+P Q
Sbjct: 169 EMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQ 228
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+QQ A +SGPNANPLDLFPQ LPN +NA G LD LRN+ QF+ L ++VQANPQIL
Sbjct: 229 SQQAVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSLVQANPQIL 285
Query: 301 Q----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
Q ELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q + +PQ V VTP E E
Sbjct: 286 QPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLEQFGAGVPQTVAVTPAENE 345
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AI+RLE MGFDR LVLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 346 AIQRLEHMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 387
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 247/414 (59%), Positives = 293/414 (70%), Gaps = 28/414 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP A A A + +DVY QAASNLV+G++LE T+QQIL
Sbjct: 121 ------------AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 344
+VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 349 PQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 246/412 (59%), Positives = 290/412 (70%), Gaps = 27/412 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K SS+ ++++ PT + AP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSA-------------ASSTAKEPTKQPSVDRAIPTAPATQ 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + P AP P A APA A S+ +D YGQAASNLVAGSNLE TVQ IL
Sbjct: 108 PPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSIL 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPPA 237
+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA PA
Sbjct: 168 EMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPA 227
Query: 238 QTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 228 AVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLL 287
Query: 291 TMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 346
++VQANPQILQ ELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MPQ
Sbjct: 288 SLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQ 347
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E LAANYLLDHM+EF+D
Sbjct: 348 TVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDD 399
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/251 (84%), Positives = 227/251 (90%), Gaps = 8/251 (3%)
Query: 154 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 214 IPEQTAVPPVAR-ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
IPEQ VPPV R ++GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEP 328
GAGTLDFLRNSQQFQALR MVQANPQI LQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 305 GAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 364
Query: 329 VEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
VEGGE GN++ QLA +PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN
Sbjct: 365 VEGGEGGNIINQLAGGVPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 424
Query: 388 YLLDHMHEFED 398
YLLDH+HEF++
Sbjct: 425 YLLDHIHEFDE 435
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/383 (67%), Positives = 298/383 (77%), Gaps = 25/383 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAAS 164
APP SV S+PP +P P P PAPAPAP P P + +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 225 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 282
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 283 SQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
S QFQALR MV+ANPQI LQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+LG
Sbjct: 299 SPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNILG 357
Query: 339 QLASAMPQAVTVTPEEREAIERL 361
QLA AMPQA+TVTPEEREAI+R+
Sbjct: 358 QLAEAMPQAITVTPEEREAIQRV 380
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 258/383 (67%), Positives = 298/383 (77%), Gaps = 25/383 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV---------------SDVYGQAAS 164
APP SV S+PP +P P P PAPAPAP P P + +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 225 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 282
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 283 SQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
S QFQALR MV+ANPQI LQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+LG
Sbjct: 299 SPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNILG 357
Query: 339 QLASAMPQAVTVTPEEREAIERL 361
QLA AMPQA+TVTPEEREAI+R+
Sbjct: 358 QLAEAMPQAITVTPEEREAIQRV 380
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/400 (57%), Positives = 278/400 (69%), Gaps = 33/400 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+FVV+ML+K+KVSS S+AP+N TQP ++ + T
Sbjct: 61 ENKVVENNFVVIMLSKNKVSSGA----SSAPSN----------LGTQPQSSLPPTSSTSQ 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP S + +P P P +V +Y AASNL+AGSNLE T+QQIL
Sbjct: 107 PPASAVGQGESNSEQSPVITP---------PTIAVPSIYDHAASNLMAGSNLETTIQQIL 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV AL AA+NNPERA+EYLYSGIPE+ VP R+ GQA N + Q
Sbjct: 158 EMGGGNWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAEN--SSIQ 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ QPA PT GPN NPL+LFPQGLPNM + G LD LRN ++FQALR ++ NPQIL
Sbjct: 216 STQPA--VPTGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNREEFQALRETMRENPQIL 273
Query: 301 ----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
QELG+QNP LM++IQ+HQ D L L+NEP EG E N+ QL S + VT+TPEE E
Sbjct: 274 QPMIQELGQQNPQLMQIIQDHQEDILDLMNEP-EGDE-NLQSQLDSMISGTVTITPEENE 331
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
AI+RLEAMGF R +V+E FFACNKNE+LAANYLLDH EF
Sbjct: 332 AIQRLEAMGFHRDIVVEAFFACNKNEDLAANYLLDHPDEF 371
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 246/404 (60%), Positives = 283/404 (70%), Gaps = 33/404 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 219 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 274
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 354
LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 275 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 333
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 334 NEAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 377
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/414 (61%), Positives = 303/414 (73%), Gaps = 31/414 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA-------ASDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVARA A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 344
+VQANPQI LQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+AM
Sbjct: 286 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAM 345
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ+VTVTPEEREAI+RLE MGF+ LVLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 346 PQSVTVTPEEREAIQRLEGMGFNHELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/414 (61%), Positives = 303/414 (73%), Gaps = 31/414 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E+APP A APA A S +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA-------ASDDADVYSQAASNLVSGNNLEQTIQQIL 165
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVA A A GQ N A +
Sbjct: 166 DMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSP 225
Query: 241 AQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQAL
Sbjct: 226 AQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQAL 285
Query: 290 RTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 344
+VQANPQI LQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+AM
Sbjct: 286 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAAM 345
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ+VTVTPEEREAI+RLE MGF+R LVLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 346 PQSVTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/404 (61%), Positives = 283/404 (70%), Gaps = 29/404 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + APPT T P QT A A
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSS------AAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 113 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 165 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 221
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQI
Sbjct: 222 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 278
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 354
LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 279 QPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEE 337
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 338 NEAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 381
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 243/404 (60%), Positives = 283/404 (70%), Gaps = 37/404 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPAT---------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PPQ+ AP A A A A VS+ +D YGQA SNLVAGSNLE T++ IL
Sbjct: 103 PPQTSAAPDA--PAPIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSIL 160
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P Q
Sbjct: 161 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQ 214
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 215 AVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQIL 270
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 354
LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 271 QPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEE 329
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 330 NEAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 373
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/246 (84%), Positives = 216/246 (87%), Gaps = 10/246 (4%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV+RALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPA--APAPTSGPNANPLDLFPQGLPNMGSNAG-A 274
PPVA GGQA P AQ Q Q P A P+ GPNANPLDLFPQGLPN+GS AG A
Sbjct: 151 AEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 275 GTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
GTLDFLRNSQQFQALR MVQANPQILQ ELGKQNPHLMRLIQEHQ DFLRLINEPVE
Sbjct: 208 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVE 267
Query: 331 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
GEGNVLGQLA+AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL
Sbjct: 268 SGEGNVLGQLAAAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 327
Query: 391 DHMHEF 396
DHMHEF
Sbjct: 328 DHMHEF 333
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 76/101 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
ENK+ ENSFVV+ML+K + +S S S QA ++ A
Sbjct: 61 ENKIVENSFVVIMLSKVRFASLVLSFESYYVYGQAASSLVA 101
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/403 (55%), Positives = 272/403 (67%), Gaps = 45/403 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQ ELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPTEQ 320
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/403 (55%), Positives = 272/403 (67%), Gaps = 45/403 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQ ELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQ 320
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 274/403 (67%), Gaps = 45/403 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
LQ ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQ 320
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/407 (57%), Positives = 282/407 (69%), Gaps = 45/407 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPA-------QEQPA---AQTDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 264
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 351
QI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 265 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 324
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 325 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 235/419 (56%), Positives = 279/419 (66%), Gaps = 39/419 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S A Q+ T + P QP +S TPA V
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVS---------AGQSSTQPAQNPPVAQPVLSS-TPAAQVT 110
Query: 121 P---PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS---------DVYGQAASNLVA 168
P P + +P PA AP AP AP+ AP +S S D YGQAASNLVA
Sbjct: 111 PSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVA 170
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 227
G+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R
Sbjct: 171 GNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFG 230
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNS 283
+G Q + PAP SG PN PL++FPQ + G G+L+FLRN+
Sbjct: 231 SG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNN 282
Query: 284 QQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 339
QFQALRTMV NPQILQ ELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q
Sbjct: 283 PQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQ 342
Query: 340 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
MP A+ VTP E+ AIERLEAMGFDRALV+E F AC++NEELAANYLL++ +F+D
Sbjct: 343 AEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 401
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 231/407 (56%), Positives = 281/407 (69%), Gaps = 45/407 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPA-------QEQPA---AQTDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 264
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 351
QI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 265 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 324
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 325 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 237/421 (56%), Positives = 285/421 (67%), Gaps = 49/421 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPA---PAP----------APAPAPAPAPVSSV-SDVYGQAASNL 166
P S +S+P PA+P PA PA A P VS +D YGQAAS L
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTL 166
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PV 223
V+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P
Sbjct: 167 VSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPE 226
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
A+ + G A P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 227 AQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 284 QQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL 337
QFQ LRTMV +NPQI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++
Sbjct: 275 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMF 334
Query: 338 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FE
Sbjct: 335 DQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFE 394
Query: 398 D 398
D
Sbjct: 395 D 395
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/407 (55%), Positives = 275/407 (67%), Gaps = 51/407 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 351
QI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 319 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/407 (55%), Positives = 275/407 (67%), Gaps = 51/407 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTNPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 351
QI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 319 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/402 (54%), Positives = 266/402 (66%), Gaps = 58/402 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV+
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTVS 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P S PP A D YG AASNLVAGSNLE T+QQI+
Sbjct: 100 MSNSTPPSDPPVQTHVSA------------------DTYGLAASNLVAGSNLEQTIQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 142 DMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV--- 198
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQIL
Sbjct: 199 -----------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQIL 246
Query: 301 Q----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
Q ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+E
Sbjct: 247 QPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQE 306
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 307 AIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 348
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/407 (55%), Positives = 274/407 (67%), Gaps = 51/407 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI+
Sbjct: 113 -------ASPIPAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 205
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSNP 258
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 351
QI LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVT 318
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 319 PAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/423 (58%), Positives = 299/423 (70%), Gaps = 36/423 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 335
R QFQAL +VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+LG LA+ MPQAV VTPEEREAI+RLE+MGF+R LVLEVFFACN++EELAANYLLDH HE
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHE 409
Query: 396 FED 398
FE+
Sbjct: 410 FEE 412
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/411 (54%), Positives = 273/411 (66%), Gaps = 58/411 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+KSKV + +A + QT S+ P T P +TS V
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-------LGSAGTSSTQTASNPPITVPTPDSTS------VV 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS +A P AP + +D YGQAASNLVAGSNLE T+QQ++
Sbjct: 108 QTQSANNNASPAVL---------------APTNVTTDTYGQAASNLVAGSNLEQTIQQLI 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A
Sbjct: 153 DMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPA 196
Query: 241 AQQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
AQ P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRT
Sbjct: 197 AQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRT 255
Query: 292 MVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 347
MVQ+NPQILQ ELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP A
Sbjct: 256 MVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHA 315
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
V VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 316 VNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 225/406 (55%), Positives = 274/406 (67%), Gaps = 49/406 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVS-SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKV E F+VVML+KSK + S+G S+V A A TTSS P + P+TT P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASA----TTSSTKPET--PSTTQSIAVP-- 112
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++P A PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 --------ASPITAQEQPA---------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQ 238
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE VA A G Q AG+ A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE---TAEVAVAVPGAQMAGSGAA- 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NPQ
Sbjct: 206 -----PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQ 259
Query: 299 I----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTP 352
I LQELGKQNP L+RLIQE+Q +FL+L+NEP EG G+ ++L Q MP A+ VTP
Sbjct: 260 ILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGDADMLDQPEQEMPHAINVTP 319
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E+EAI+RLEAMGFD+ALV+E F AC++NEELAANYLL++ +FED
Sbjct: 320 AEQEAIQRLEAMGFDKALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 270/405 (66%), Gaps = 37/405 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK +++G S+ T +S + + +
Sbjct: 61 DNKVTEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSAS 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ +A SD YGQAASNLVAGS+LE T+QQI+
Sbjct: 121 ASDTATANAQ-------------------------SDTYGQAASNLVAGSSLEQTIQQIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 156 DVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQGIET 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--GTLDFLRNSQQFQALRTMVQANP 297
A A GPN++PL++FP+ L G +AG G+LDFLRN+QQFQALR+MVQANP
Sbjct: 211 GAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANP 270
Query: 298 QILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
QILQ ELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 271 QILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPA 330
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E+EAIERL AMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 331 EQEAIERLVAMGFDRALVIEAFLACDRNEELAANYLLENGADFED 375
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/408 (57%), Positives = 278/408 (68%), Gaps = 51/408 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN F+VVMLTKSK +AAP T+S A P+ST
Sbjct: 61 ENKVSENGFLVVMLTKSK---------TAAP-----TSSGATPSST-------------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AAPA PAPA ++ SDVYGQAASNLVAG+ LE T+QQ++
Sbjct: 93 ----------PQAAPATVTTTPSPAPPAPA-PTATSDVYGQAASNLVAGTGLEQTIQQLV 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+ PPVARA A +
Sbjct: 142 DMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSA 201
Query: 241 AQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NPQ
Sbjct: 202 APTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQ 261
Query: 299 I----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVTV 350
+ LQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++V
Sbjct: 262 LLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSISV 319
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TPEEREAIERLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 320 TPEEREAIERLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 367
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 265/404 (65%), Gaps = 46/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+S QPT+T+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TPSSAGPSSIQPTSTTTSTISPTP 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A PA P PA SD YGQAAS LV+GS++E VQQI+
Sbjct: 103 L------AAPSIAVPASNSTPVQEQLPAQ------SDTYGQAASTLVSGSSVEQMVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE A+P + G A
Sbjct: 151 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVAIPATNLSGVGSGA-------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
+ AP + GPN++PLDLFPQ + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 203 --ELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 260
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMPQAVTVTPEE 354
LQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G ++ Q MP AV VTPEE
Sbjct: 261 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDMDIFDQPEQEMPHAVNVTPEE 320
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL+H +FED
Sbjct: 321 QEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEHSADFED 364
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/404 (52%), Positives = 267/404 (66%), Gaps = 42/404 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +S SA P++ T+++ +++ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAS------SAGPSSTQPTSTTT-----STISSTTLAAPSTT 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 110 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 204
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 205 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 264
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEE 354
LQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE
Sbjct: 265 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 324
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 325 QESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/406 (56%), Positives = 271/406 (66%), Gaps = 48/406 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG---------- 50
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
+K SSS A S P+NQ APPT T P SQ P
Sbjct: 51 ---------------TNKGSSSAAPAKSKEPSNQ------APPTQTVPANPPSQAPVVPA 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P +AP P +PA A A VS+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 90 PPAAAAPAPIVPISAPTPTATASPASAVA---VSTEAETYGQAASNLVAGGNLEATIQSI 146
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 147 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 200
Query: 240 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 297
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 260
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 352
QI LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 261 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 320
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EE EAI RLE MGFDRALVLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 321 EENEAILRLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 366
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/406 (55%), Positives = 273/406 (67%), Gaps = 40/406 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENK+ E+ F+VVML+KSK AP + +++ T T +
Sbjct: 61 ENKITEDGFLVVMLSKSK-----------APGSTGSSSTQTTTIVPTTTPTPNS------ 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+PE+ PA PA + A + P ++ D YGQAASNLV+G+NLE T+Q+I+
Sbjct: 104 --TSIPEA---PAQPAASRNVAISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIM 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE V PVAR G
Sbjct: 156 DMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARPPTG-------QPI 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A AP + GPN++PL++FPQ G G+L+FLRN+ QFQALR+MVQAN
Sbjct: 209 DAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQAN 268
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
PQILQ ELGKQNP L+RLIQ+HQ +FL+LINEP+EG EG++ Q MP A+ VTP
Sbjct: 269 PQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVTP 328
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E++AIERLEAMGFDR V+E F AC++NEELAANYLL+H EFED
Sbjct: 329 AEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHGGEFED 374
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/408 (54%), Positives = 274/408 (67%), Gaps = 19/408 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHF--------- 231
Query: 236 PAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
PA + A AP SG PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQ
Sbjct: 232 PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQ 291
Query: 295 ANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 350
ANPQILQ ELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+ V
Sbjct: 292 ANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINV 351
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP E+EAIERLEAMGFDRALV+E F AC++NEELA NYLL++ ++ED
Sbjct: 352 TPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 399
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/407 (54%), Positives = 263/407 (64%), Gaps = 58/407 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK T+ SA +STQP
Sbjct: 61 ENKVSEEGFLVVMLSKSK------------------TSVSAGQSSTQPAQN--------- 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP A P + PA P S +D YGQAASNLVAG+NLE TVQQ++
Sbjct: 94 ---------PPVAQPVLSSTPAAQVTP-----SVQTDTYGQAASNLVAGNNLEQTVQQLM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 140 DMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------QA 191
Query: 240 QAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ QFQALRTMV
Sbjct: 192 TETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVHT 251
Query: 296 NPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 351
NPQILQ ELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q MP A+ VT
Sbjct: 252 NPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINVT 311
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+ AIERLEAMGFDRALV+E F AC++NEELAANYLL++ +F+D
Sbjct: 312 PAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 358
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/405 (54%), Positives = 266/405 (65%), Gaps = 54/405 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK ++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTGTAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P P A A A SD YGQAASNLVAGSNLE T+QQI+
Sbjct: 95 TTTPTSISTPAPDAQAFAQ----------------SDTYGQAASNLVAGSNLEQTLQQIM 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +T
Sbjct: 139 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQATET 193
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTMVQANP 297
A A PN++PL++FP+ + G AG G +LDFLRN+QQFQALR+MVQANP
Sbjct: 194 GAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANP 253
Query: 298 QILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
QILQ ELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 254 QILQPMLQELGKQNPQLLRIIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPA 313
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E+EAIERLEAMGFDRALV+E F AC++NE+LAANYLL++ +FED
Sbjct: 314 EQEAIERLEAMGFDRALVIEAFLACDRNEQLAANYLLENAGDFED 358
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/409 (55%), Positives = 281/409 (68%), Gaps = 35/409 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ-TPAPTV 119
ENKV+EN F+VVMLTKS+ SSG + S++ ++ + + S++ + + S+ +
Sbjct: 61 ENKVSENGFLVVMLTKSR--SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLF 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S+ PPAA SDVYGQAASNLVAG+ LE T+QQ+
Sbjct: 119 WCSLSLVFLRRPPAA--------------------TSDVYGQAASNLVAGTGLEQTIQQL 158
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGGSWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A T
Sbjct: 159 VDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPT 218
Query: 240 QAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NP
Sbjct: 219 AAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNP 278
Query: 298 QI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVT 349
Q+ LQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++
Sbjct: 279 QLLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSIS 336
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTPEEREAIERLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 337 VTPEEREAIERLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 385
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/407 (53%), Positives = 272/407 (66%), Gaps = 16/407 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
ENKV E+ F+VVML+KSK +S A + S T + AP + P +
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
+A P P AP A AP A S ++D YGQAASN+V+ ++LE T+
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNP 235
QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA A
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD------ 234
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+T + A + PN++PL++FPQ + + G G+L+FLRN+ QFQALR MVQA
Sbjct: 235 -QETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMVQA 293
Query: 296 NPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 351
NPQILQ ELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+ VT
Sbjct: 294 NPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAINVT 353
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E+EAIERLEAMGFDRALV+E F AC++NEELA NYLL++ ++ED
Sbjct: 354 PAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 400
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/348 (64%), Positives = 255/348 (73%), Gaps = 30/348 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
PQ P A P P A A APA +SV +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LQELGKQNP L+RLIQEHQ DFLRLINEPVEG E G + S+
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEEWECYGTVGSS 323
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/405 (54%), Positives = 268/405 (66%), Gaps = 47/405 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A S PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFA---------SNPPT-------------TV 98
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P A A A + ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 99 STPNSTP-------LVQPQSANNNASATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQL 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 152 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 202
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 203 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 261
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
PQILQ ELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP
Sbjct: 262 PQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTP 321
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
E+EAI RLEAMGFDRA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 322 AEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFE 366
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/405 (53%), Positives = 264/405 (65%), Gaps = 61/405 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A N PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFN--------PPT-------------TV 99
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P S P P ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 100 STPNSTPLVQP----------------------HVTTNTYGQAASNLVAGSNLEQTIQQL 137
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 138 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 188
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 189 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 247
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
PQILQ ELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP
Sbjct: 248 PQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTP 307
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
E+EAI RLEAMGFDRA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 308 AEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFE 352
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/404 (51%), Positives = 266/404 (65%), Gaps = 44/404 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P++ T+++ +++ AP+
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASS------AGPSSTQPTSTTT-----STISSTTLAAPSTT 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 108 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 153 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS---------- 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 203 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 262
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEE 354
LQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE
Sbjct: 263 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 322
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 323 QESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 366
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/404 (52%), Positives = 263/404 (65%), Gaps = 31/404 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+K++E+ F+VVML KSK SS T + A + + + P + PA V
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSS---TGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVI 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +VPE+ P +PA AP SD YG+AASN+VAGSNLE T+Q I+
Sbjct: 118 PNTTVPEA---PLSPAFAP----------------SDTYGEAASNVVAGSNLEQTIQHIM 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
DMGGG WD V RALRAAYNNPERAV+YLYSGIPE + AVP AGN
Sbjct: 159 DMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNAIS 218
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
AAP PN+ PL++FPQ + + AG G+L+FLRN+ QFQ LR+MVQ NPQ
Sbjct: 219 DNGVAGAAPG---APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTLRSMVQRNPQ 275
Query: 299 ILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
ILQ ELGKQNP L+R IQEH +FL+LINEPVE EG++ Q +PQ +TVT +
Sbjct: 276 ILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPVEASEGDMFDQPEQDVPQEITVTAAD 335
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+EAIERLEAMGFDR LV+E F AC++NEELA NYLL++ +FED
Sbjct: 336 QEAIERLEAMGFDRGLVIEAFLACDRNEELAVNYLLENAGDFED 379
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/399 (53%), Positives = 259/399 (64%), Gaps = 57/399 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEATVQQI 179
S+ S PP P A + + AP ++VS D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
GPN++PL++FPQ + + AG G+LDFLRN NPQ
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRN-------------NPQ- 246
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 359
ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+EAI
Sbjct: 247 --ELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQEAIG 304
Query: 360 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 305 RLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 343
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/403 (54%), Positives = 266/403 (66%), Gaps = 57/403 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI+
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ----------TDTYGQAASTLVSGSSLEQMVQQIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 157 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 211
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------- 251
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEER 355
QELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP E+
Sbjct: 252 ---QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQ 308
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 309 EAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 351
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/408 (56%), Positives = 273/408 (66%), Gaps = 49/408 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN FVVVMLTK+K + +GAS PP+S+ T
Sbjct: 61 ENKVSENGFVVVMLTKAK-TGAGAS----------------PPSSSGTT----------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ A P+P P + + YGQAASNLVAG+ LE TVQQI+
Sbjct: 93 --QAPAPVAAATPPAPARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQIM 150
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA--- 237
DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE + PV G PA
Sbjct: 151 DMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESAEMRPV--------GGRSPAVAG 202
Query: 238 --QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
PA AP GPNA PLDLFPQG+P M GAG LDFLRN+ Q +LRTMVQA
Sbjct: 203 VPAATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGGAGALDFLRNNPQ-ASLRTMVQA 261
Query: 296 NPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLGQLASAMPQAVTV 350
NPQI LQELGKQNP L+RLI ++Q +FLRLINE EG EG++LGQLA AMPQ++ V
Sbjct: 262 NPQILQPMLQELGKQNPALLRLINDNQAEFLRLINEAGAEGAEGDILGQLAGAMPQSINV 321
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TPEEREAI+RLE MGF+R LV+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 322 TPEEREAIDRLEGMGFERTLVIEAFLACDKNEQLAANYLLEHAGDYED 369
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/402 (55%), Positives = 268/402 (66%), Gaps = 48/402 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 350
NPQI LQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++ V
Sbjct: 263 NPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINV 322
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
TPEE+EAI RLE MGFDRA V+E FFAC++NE+LAANYLL+H
Sbjct: 323 TPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEH 364
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/402 (55%), Positives = 268/402 (66%), Gaps = 48/402 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AAP P AP P P P + S+ YGQAASNL++GSNL+ T+ Q++
Sbjct: 107 ------------AAPQPLVAPTRTPQPERPPAEAPSNAYGQAASNLLSGSNLDTTINQLM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN--PP 236
+MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N P
Sbjct: 155 EMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTTEP 208
Query: 237 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 209 SSTRE------ASLSGIPNASPLNLFPQGDANDGDGAGGGTLEFLRHNQQFQALREMVHT 262
Query: 296 NPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 350
NPQI LQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++ V
Sbjct: 263 NPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSINV 322
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
TPEE+EAI RLE MGFDRA V+E FFAC++NE+LAANYLL+H
Sbjct: 323 TPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEH 364
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 229/406 (56%), Positives = 269/406 (66%), Gaps = 24/406 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKVAEN F+VVMLTK ++ S T +S T
Sbjct: 61 DNKVAENGFLVVMLTKVRLHES-------------NTGTSRWRTRVVAPAAPAPAPAPAP 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P A P APA A A APA A D YGQAASNLVAGS LE+TVQQI+
Sbjct: 108 ASTSTPAPAAPAPAPAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
DMGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE VP PVAR G A A
Sbjct: 168 DMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPA 227
Query: 240 QAQQPAAPAPTS---GPNANPLDLFPQGLP-NMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
A A + GPNA PLDLFPQG+P G AG G LDFLRN+ QFQALRTMVQA
Sbjct: 228 GPGAAGAAAVAANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQA 287
Query: 296 NPQI----LQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAVT 349
NPQI LQELGKQNP L+RLI E+Q +FLRLIN G+ +G+LA PQ+V
Sbjct: 288 NPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDAVGRLAGGYPQSVN 347
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
VTPEERE+IERLEAMGF+RALV+E F AC+KNE+LAANYLL+H ++
Sbjct: 348 VTPEERESIERLEAMGFNRALVIEAFLACDKNEQLAANYLLEHAND 393
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/409 (54%), Positives = 268/409 (65%), Gaps = 61/409 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK S S ++ + A TT+ +++ TPA V
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAP---------SSNSTPAVEVQ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + +D YG+AASNLVAG NLE T+QQI+
Sbjct: 112 PP-------------------------------TQTDTYGEAASNLVAGDNLEQTIQQIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAG--GQAGNPPA 237
DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA AG + G PA
Sbjct: 141 DMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAPA 200
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
AP SG PN++PL++FPQ GS G G+LDFLRN+ QFQ LR+MV
Sbjct: 201 ----------APLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMV 250
Query: 294 QANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 349
QANPQILQ ELGKQNP L+R+IQEH +FL+L+NEP+EG EG++ Q MP A+
Sbjct: 251 QANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLNEPLEGSEGDIFDQGEQDMPHAIN 310
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP E+ AIERL AMGFDRALV+E F AC++NE LAANYLL++ +FED
Sbjct: 311 VTPAEQAAIERLVAMGFDRALVIEAFLACDRNEVLAANYLLENGGDFED 359
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 369 bits (948), Expect = e-99, Method: Compositional matrix adjust.
Identities = 231/404 (57%), Positives = 262/404 (64%), Gaps = 54/404 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ G+S SAAPA T + APPT T P QT A A
Sbjct: 52 --------------------NKGSS--SAAPAKT--TANQAPPTQTVPVVPPQTSAAPAA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q IL
Sbjct: 88 PAPIVPVSALAATATASAAPAVAVSTEA--------DSYGQAASNLVAGSNLEGTIQSIL 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP Q
Sbjct: 140 EMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQ 196
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
A Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQI
Sbjct: 197 AAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQIL 253
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEE 354
LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 254 QPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEE 312
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 313 NEAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 356
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 220/379 (58%), Positives = 265/379 (69%), Gaps = 28/379 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQAL 289
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQAL
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQAL 288
Query: 290 RTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAM 344
+VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+
Sbjct: 289 LQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAV 348
Query: 345 PQAVTVTPEEREAIERLEA 363
PQ +TVTPEEREAI+R ++
Sbjct: 349 PQTLTVTPEEREAIQRCKS 367
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/230 (80%), Positives = 200/230 (86%), Gaps = 9/230 (3%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GN
Sbjct: 1 MIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGN 60
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMV 293
PPA A A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MV
Sbjct: 61 PPA---AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMV 117
Query: 294 QANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQAV 348
QANPQILQ ELGKQNPHLMRLIQ+HQ DFLRLINEPVEGGEGN+LGQ A +AMPQAV
Sbjct: 118 QANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQPAGAAMPQAV 177
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+VTPEEREAIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 178 SVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 227
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 267/404 (66%), Gaps = 46/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S + +S+QP S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGT------------------SSSQP---SNTPAARQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + Y AAS+L++GSN++ + Q+
Sbjct: 100 PPLDAPQQAPQPPVAPTTTSQPEGLPAQAP------PNTYDNAASSLLSGSNVDTMINQL 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 154 MEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEVAVP------IGGQGAN--- 204
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PL+LFPQG N G AG G LDFLRN+QQFQA+R MV N
Sbjct: 205 -TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAGGGPLDFLRNNQQFQAVREMVHTN 263
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTVT 351
PQILQ EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++VT
Sbjct: 264 PQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVT 323
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
PEE++AI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 324 PEEQDAIGRLESMGFDRARVIEAFIACDRNEELAANYLLEHAGE 367
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 218/404 (53%), Positives = 262/404 (64%), Gaps = 47/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSS---------------------QHSNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
T + P A SG PN PLDLFPQG N G AG G LDFLRN+ QFQA+R MV N
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHTN 262
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTVT 351
PQILQ EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++VT
Sbjct: 263 PQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISVT 322
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
PEE+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 323 PEEQEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 366
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 204/405 (50%), Positives = 257/405 (63%), Gaps = 45/405 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK S G++ ++ + S P ++ P T +
Sbjct: 61 ENKVTEEGFLVVMLSKSK--SGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIYNPVFTCS 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
++ +D YGQAAS LV+GS+LE VQQI+
Sbjct: 119 C------------------------FTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPPA 237
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 155 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA----- 209
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR-TMVQAN 296
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q L + N
Sbjct: 210 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVAILTISAFSLN 262
Query: 297 PQ-ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPE 353
+ +LQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP
Sbjct: 263 CEPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPA 322
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 323 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 367
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 213/405 (52%), Positives = 258/405 (63%), Gaps = 48/405 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSS---------------------QHSNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQA 295
T + P A SG PN PLDLFPQ + G LDFLRN+ QFQA+R MV
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHT 262
Query: 296 NPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 350
NPQILQ EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++V
Sbjct: 263 NPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISV 322
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
TPEE+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 323 TPEEQEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 367
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 210/386 (54%), Positives = 255/386 (66%), Gaps = 44/386 (11%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+KSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
AP + +++ T T + S+PE+ PA PA + A
Sbjct: 91 -------APGSTGSSSTQTTTIVPTTTPTPNS--------TSIPEA---PAQPAASRNVA 132
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
+ P ++ D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYNN
Sbjct: 133 ISDVPT---ANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNN 189
Query: 203 PERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAP--TSGPNANPLD 259
PERAV+YLYSGIPE V PVAR PP A AP + GPN++PL+
Sbjct: 190 PERAVDYLYSGIPETAEVAAPVAR---------PPTGQPIDAGGATAPPVSGGPNSSPLN 240
Query: 260 LFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMR 312
+FPQ G G+L+FLRN+ QFQALR+MVQANPQILQ ELGKQNP L+R
Sbjct: 241 MFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLR 300
Query: 313 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
LIQ+HQ +FL+LINEP+EG EG++ Q MP A+ VTP E++AIERLEAMGFDR V+
Sbjct: 301 LIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVI 360
Query: 373 EVFFACNKNEELAANYLLDHMHEFED 398
E F AC++NEELAANYLL+H EFED
Sbjct: 361 EAFLACDRNEELAANYLLEHGGEFED 386
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 203/314 (64%), Positives = 231/314 (73%), Gaps = 45/314 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+
Sbjct: 168 GSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYT 227
Query: 213 GIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G N
Sbjct: 228 GIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGGN 284
Query: 272 AGAGTLDFLRNSQQ 285
GAGTLDFLRNSQQ
Sbjct: 285 PGAGTLDFLRNSQQ 298
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 209/399 (52%), Positives = 261/399 (65%), Gaps = 44/399 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V E F+VVML+KSK ++S+ +S QP++T P +
Sbjct: 61 ENQVGEAGFLVVMLSKSK------------------ASASSGGSSAQPSST-----PVTS 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V + P P PA P+S+V D+ AAS+L++GSNL+ + QI+
Sbjct: 98 QAPPVAQPQAPQPQVPSTTTSQPERPPAETPLSTV-DI---AASDLLSGSNLDTMINQIM 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQ 238
+MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + AVP V GQ N
Sbjct: 154 EMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPVV------GQGAN---- 203
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T A P + PN PLDLFPQG + G AG G+LDFLRN+QQFQALR MV NPQ
Sbjct: 204 TTAAAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQQFQALREMVHTNPQ 263
Query: 299 I----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL-ASAMPQAVTVTPE 353
I LQEL KQNP L+RLIQE+ +FL+L+NE EGG+G+ L Q MP A++VTPE
Sbjct: 264 ILQPMLQELSKQNPQLLRLIQENNDEFLQLLNETFEGGDGDFLDQADQDEMPHAISVTPE 323
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
E+EAI RLEAMGF+RA V+E FFAC++NE+LAANYLL+H
Sbjct: 324 EQEAIGRLEAMGFERARVIEAFFACDRNEQLAANYLLEH 362
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 212/409 (51%), Positives = 257/409 (62%), Gaps = 63/409 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVS----------SSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
EN+V+E+ +VVML+KSK S SS T A P Q Q S+ P PTT
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVP----PTT 116
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
TSQ P PA P+++V V AS+L++GS
Sbjct: 117 TSQ-----------------------------PERPPAETPLNTVDHV----ASDLLSGS 143
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASA 228
NL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AVP
Sbjct: 144 NLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAVP------V 197
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
G Q N T A P + PN PL+LFPQG N G AG G+LDFLRN+QQFQA
Sbjct: 198 GPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFLRNNQQFQA 254
Query: 289 LRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASA 343
LR MV NPQI LQEL KQNP L+RLIQE+ +FL L+NE + G+G+ L Q
Sbjct: 255 LREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLGLLNENFDAGDGDFLDQPDEDE 314
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
MP A++VTPEE+EAI RLEAMGFDRA V+E FFAC++NE+LA NYLL+H
Sbjct: 315 MPHAISVTPEEQEAIGRLEAMGFDRARVIEAFFACDRNEQLAVNYLLEH 363
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 213/365 (58%), Positives = 249/365 (68%), Gaps = 35/365 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSA---A 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-SDVYGQAASNLVAGSNLEATVQQI 179
P AP P P APA + APA S +D YGQA SNLVAGSNLE T++ I
Sbjct: 110 P------DAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSI 163
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P
Sbjct: 164 LEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPV 217
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
QA QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 218 QAVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQI 273
Query: 300 ----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 353
LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPE
Sbjct: 274 LQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPE 332
Query: 354 EREAI 358
E EAI
Sbjct: 333 ENEAI 337
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 270/404 (66%), Gaps = 43/404 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-----DVYGQAASNLVAGSNLEAT 175
+S P A P AA PAP A A + P ++V+ DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQA-PVAASEPAPPSAQPSAVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 234
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 235 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 280
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 281 RNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 335
R QFQAL +VQANPQI LQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
+LG LA+ MPQAV VTPEEREAI+R++ +L + F C
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQRVQ-------YILMICFLCK 386
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/250 (63%), Positives = 192/250 (76%), Gaps = 12/250 (4%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
SD YGQAASNLVAGS+LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
Query: 216 EQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
E V PVAR A + +T A A GPN++PL++FP+ L G +AG
Sbjct: 165 ETAEVAVPVARFPA-----DQGIETGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGL 219
Query: 275 --GTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEP 328
G+LDFLRN+QQFQALR+MVQANPQILQ ELGKQNP L+R+IQEH +FL+LINEP
Sbjct: 220 VLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEP 279
Query: 329 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
++G EG++ Q MP A+ VTP E+EAIERL AMGFDRALV+E F AC++NEELAANY
Sbjct: 280 LDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLACDRNEELAANY 339
Query: 389 LLDHMHEFED 398
LL++ +FED
Sbjct: 340 LLENGADFED 349
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 169/223 (75%), Gaps = 17/223 (7%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQ 110
Query: 302 ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 355
EL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 111 PLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEEN 169
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 170 EAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 212
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 170/223 (76%), Gaps = 13/223 (5%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 301
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQ 114
Query: 302 ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 355
ELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 115 PLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEEN 173
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 174 EAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 216
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/251 (57%), Positives = 181/251 (72%), Gaps = 20/251 (7%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+YLYS IP
Sbjct: 46 TDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIP 105
Query: 216 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG--PNANPLDLFPQGLPNMGSN 271
E + AVP A P +QT G PN++PL++ PQ +P G+
Sbjct: 106 EAAEIAVPA---------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG 156
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINE 327
AG G+L+ + Q+FQALR+MVQ+NPQI LQELGKQN L RLIQEH +FL+LIN+
Sbjct: 157 AGIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLIND 216
Query: 328 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
PVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E AC+++E+LAAN
Sbjct: 217 PVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIE---ACDRDEQLAAN 273
Query: 388 YLLDHMHEFED 398
YLL++ +FED
Sbjct: 274 YLLENAGDFED 284
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 195/292 (66%), Gaps = 23/292 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E+APP P APA A + +DVY QAASNLV+G+NLE T+QQIL
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA-------ATDDADVYSQAASNLVSGNNLEQTIQQIL 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PP 236
DMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N P
Sbjct: 169 DMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAASP 228
Query: 237 AQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLR 281
AQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 229 AQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALR 280
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/230 (58%), Positives = 163/230 (70%), Gaps = 30/230 (13%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 242 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTM
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTM 103
Query: 293 VQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 348
VQ+NPQILQ ELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP AV
Sbjct: 104 VQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAV 163
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 164 NVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 213
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/285 (48%), Positives = 167/285 (58%), Gaps = 49/285 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+STQ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TASSAGPSSTQ------LAAPSTT 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI+
Sbjct: 97 QSIAVPASNSTPVQEQP---------------TAQSDTYGQAASTLVSGSSIEQMVQQIM 141
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 142 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG----------S 191
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + Q
Sbjct: 192 GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQ 236
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 233/426 (54%), Gaps = 60/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P S P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLL 390
AAN+LL
Sbjct: 397 AANFLL 402
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 236/433 (54%), Gaps = 70/433 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q + P P
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQ----APIPVPA 116
Query: 119 VAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPV-------------SSVSD 157
+A P S P S PP +A A PAPA A PA PA PV SS S+
Sbjct: 117 LA-PTSTPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 175
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-- 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 216 -EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
E AV PP A ++ Q+ A +SG G P
Sbjct: 233 RESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP------ 275
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 276 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 331
Query: 329 VEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
V+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 332 VQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 391
Query: 380 KNEELAANYLLDH 392
KNE LAAN+LL
Sbjct: 392 KNENLAANFLLQQ 404
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 158/428 (36%), Positives = 236/428 (55%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ A + +N A TT+ + T+T T S TPAP +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQ-SNSATTTAVSSSTATAVTQAS-TPAPALA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVSSV-------------SDVYG 160
P S P S P + + PAPA PA P PV++ S+++
Sbjct: 119 PT-STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFE 177
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 229
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LD 278
G+ +Q + P A A T P ++ + + +G L+
Sbjct: 230 ------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSGGHPLE 276
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE---- 330
FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 331 ------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 QGGGGGGSGNAGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 165/428 (38%), Positives = 232/428 (54%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 163/428 (38%), Positives = 230/428 (53%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 232/426 (54%), Gaps = 60/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLL 390
AAN+LL
Sbjct: 397 AANFLL 402
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 165/428 (38%), Positives = 232/428 (54%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 232/426 (54%), Gaps = 60/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLL 390
AAN+LL
Sbjct: 397 AANFLL 402
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 165/428 (38%), Positives = 232/428 (54%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 231/426 (54%), Gaps = 60/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A P PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLL 390
AAN+LL
Sbjct: 397 AANFLL 402
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 228/438 (52%), Gaps = 77/438 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQ------------- 107
E K+ E +FVVVM+TK K + +A PA +++ +P T +
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPT 114
Query: 108 ------PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVS 156
T S TPA T A + P A P PA PA +PAPA + SS S
Sbjct: 115 PALAPTSTPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P PP P +PA + + +
Sbjct: 232 DRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTS 271
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 272 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 331
Query: 329 VEGG----------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
V+ G + + S + VTP+E+EAIERL+A+GF LV+
Sbjct: 332 VQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVI 391
Query: 373 EVFFACNKNEELAANYLL 390
+ +FAC KNE LAAN+LL
Sbjct: 392 QAYFACEKNENLAANFLL 409
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/422 (36%), Positives = 227/422 (53%), Gaps = 53/422 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTT------- 111
E K+ E +FVVVM+TK K ++ A+T + PA +SS P Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 112 ----SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
S TPAPT A + P SA P PA PA P A +P SS S+++
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
G+ +Q P A + + P++ +N G L+FLR
Sbjct: 231 -----------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLR 279
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG----- 332
N QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 280 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGG 339
Query: 333 ----EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+
Sbjct: 340 GGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANF 399
Query: 389 LL 390
LL
Sbjct: 400 LL 401
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 230/426 (53%), Gaps = 60/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P S + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLL 390
AAN+LL
Sbjct: 397 AANFLL 402
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 227/440 (51%), Gaps = 78/440 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---------------- 104
E K+ E +FVVVM+TK K + +A PA Q +S+ PT
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 105 ----STQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ---ILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
+G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLALLQQIGRENPQLLQQISQHQEHFIQMLNEP 330
Query: 329 V-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
V E G G + + S + VTP+E+EAIERL+A+GF LVL
Sbjct: 331 VQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVL 390
Query: 373 EVFFACNKNEELAANYLLDH 392
+ +FAC KNE LAAN+LL
Sbjct: 391 QAYFACEKNENLAANFLLQQ 410
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 226/423 (53%), Gaps = 57/423 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +T + A Q+ ++ +S+ T Q PAP V
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVL 116
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPV-------------SSVSDVYG 160
P P S P A + PAP PA PA PV SS S+++
Sbjct: 117 APTPSPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 176
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 220
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 228
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
G+ +Q P A + + P++ ++ G L+FL
Sbjct: 229 ------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFL 276
Query: 281 RNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---- 332
RN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 336
Query: 333 -----EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 337 GGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 396
Query: 388 YLL 390
+LL
Sbjct: 397 FLL 399
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/428 (38%), Positives = 230/428 (53%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAI RL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIGRLKALGFPEGLVIQAYFACEKNENL 396
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 228/441 (51%), Gaps = 79/441 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
+G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 328 PV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 371
PV E G G + + S + VTP+E+EAIERL+A+GF LV
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLV 390
Query: 372 LEVFFACNKNEELAANYLLDH 392
++ +FAC KNE LAAN+LL
Sbjct: 391 IQAYFACEKNENLAANFLLQQ 411
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/424 (37%), Positives = 223/424 (52%), Gaps = 62/424 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV------------SSSGASTVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K S++G S +AAP + T +A P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD-----VYGQAA 163
TT A +S P S P PA PA AP + S+ D ++ A
Sbjct: 121 PTTPAPAAVAC---ESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAI 177
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVP 221
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 178 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAE 234
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P AS G +Q+ AA T +P ++ G L+FLR
Sbjct: 235 PTQAASTG--------TSQSSAVAAAVAT--------------IPTTATSLGGHPLEFLR 272
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
N QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F+ ++NEPV +
Sbjct: 273 NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVIESRQGLS 332
Query: 338 GQLASAMPQAVT-----------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 386
G SA V VTP+E+EAIERL+A+GF LV++ +FAC KNE LAA
Sbjct: 333 GSDDSASTGGVAEAGNGHMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 392
Query: 387 NYLL 390
N+LL
Sbjct: 393 NFLL 396
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 161/426 (37%), Positives = 228/426 (53%), Gaps = 76/426 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K ++P+ QA T A P++ QP +T+ T P V+
Sbjct: 61 EYKIDEEKFVVVMITKPK----------SSPSVQAAATQPATPSTPQPASTTPT-VPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAV 220
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT-- 221
Query: 221 PPVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
R+S Q A T + QPAAPAPTS N L+F
Sbjct: 222 ----RSSVNNPQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEF 256
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN QF +R ++Q NP +L +LG++NPHL++ I +HQ +F++++NEP++
Sbjct: 257 LRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANE 316
Query: 336 VLGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
V + SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 317 VA--VTSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ- 373
Query: 393 MHEFED 398
F+D
Sbjct: 374 -QNFDD 378
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 157/431 (36%), Positives = 227/431 (52%), Gaps = 64/431 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K +S + S+ A AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQA 162
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 332
FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337
Query: 333 -------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 338 QGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 397
Query: 380 KNEELAANYLL 390
KNE LAAN+LL
Sbjct: 398 KNENLAANFLL 408
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 232/421 (55%), Gaps = 66/421 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
QF +R ++Q NP +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 341 ASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFD 377
Query: 398 D 398
D
Sbjct: 378 D 378
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 231/434 (53%), Gaps = 76/434 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-----------------SSAPP 103
E K+ E +FVVVM+TK K + + APA Q++ +S P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPA 114
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA---PAPAPV-------- 152
+ PT+ TPAP +AP + S P PA+ A PA PA PA +P
Sbjct: 115 PALAPTS---TPAP-IAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGD 170
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 213 GIP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
GIP E AV +A++ G A T+ +P
Sbjct: 228 GIPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHP------------ 275
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI 325
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++
Sbjct: 276 -------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 326 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 376
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 377 ACNKNEELAANYLL 390
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 157/421 (37%), Positives = 232/421 (55%), Gaps = 66/421 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASN 165
P ++VP +A P + + + + +P+ + + + S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSA 170
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 226 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
QF +R ++Q NP +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 341 ASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFD 377
Query: 398 D 398
D
Sbjct: 378 D 378
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/428 (35%), Positives = 228/428 (53%), Gaps = 60/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQ------------TTSSAPPTSTQ 107
E K+ E +FVVVM+TK K VS+ + +A +N + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQ 161
T S TPA T P+ P SA PA PA P A +P P SS S+++
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPV-ATSPTPTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGAGTLD 278
G+ +Q P A A T P ++ + +++G L+
Sbjct: 231 -----------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTTSSGGHPLE 278
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 332
FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 279 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 338
Query: 333 ----------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 382
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 339 QGGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNE 398
Query: 383 ELAANYLL 390
LAAN+LL
Sbjct: 399 NLAANFLL 406
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 224/425 (52%), Gaps = 74/425 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPT-VPPAS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-------------------APAPAPVSSVSDVYGQ 161
P + E+ P + A P A SS+ DV
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV--- 166
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP +
Sbjct: 167 ATSALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER--- 220
Query: 222 PVARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
AR+S Q A T + QPAAPAPTS N L+FL
Sbjct: 221 --ARSSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFL 257
Query: 281 RNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 336
RN QF +R ++Q NP +L +LG++NPHL++ I +HQ +F++++NEP++ V
Sbjct: 258 RNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEV 317
Query: 337 LGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
+ SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KN LAAN+LL
Sbjct: 318 A--VTSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNGNLAANFLLQ-- 373
Query: 394 HEFED 398
F+D
Sbjct: 374 QNFDD 378
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 156/434 (35%), Positives = 224/434 (51%), Gaps = 74/434 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
+G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 328 PVEGGEGNVLGQLASAMPQA-----------VTVTPEEREAIERLEAMGFDRALVLEVFF 376
PV+ G + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 390
Query: 377 ACNKNEELAANYLL 390
AC KNE LAAN+LL
Sbjct: 391 ACEKNENLAANFLL 404
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 231/401 (57%), Gaps = 42/401 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K + + + +AAPA +++AP + ++TS PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA----PSTTAPAAQSDSSSTSDKPA---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
QS + P + P+ A + + + +++ +A SNLV GS+ +A V +++
Sbjct: 113 -EQSSTDDKPEESQPSTTEASSTSVGRS----GDAANLISEAVSNLVTGSSYDAMVNEMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RA+EYL +GIP + ++G A PPA
Sbjct: 168 LMG---YEREQVVAALRASFNNPDRAMEYLLTGIPSRN-----QGNASGRDAVAPPA--- 216
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
+ PA PA + AN + P+ G G L FLRN QFQ +R ++Q N
Sbjct: 217 SGTPAVPAGNASAPAN-----TRSSPSAG---GGNPLSFLRNQPQFQVMRQLIQQNAALL 268
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFLRLINEPV-----EGGEGNVLGQLASAMPQAVTVT 351
P +LQE+G++NP L++ I HQ F++++NEPV GG G + M + VT
Sbjct: 269 PALLQEIGRENPELLQEISSHQEQFIQMLNEPVPEPVPGGGSSGAGGGGGNQM-NYIQVT 327
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 328 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 368
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 156/439 (35%), Positives = 224/439 (51%), Gaps = 79/439 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
+G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 328 PVEGGEGNVLGQLASAMPQA----------------VTVTPEEREAIERLEAMGFDRALV 371
PV+ G + VTP+E+EAIERL+A+GF LV
Sbjct: 331 PVQEAGSQGEGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLV 390
Query: 372 LEVFFACNKNEELAANYLL 390
++ +FAC KNE LAAN+LL
Sbjct: 391 IQAYFACEKNENLAANFLL 409
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 227/421 (53%), Gaps = 51/421 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K ++ A+T + PA +S+ P Q T+ APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVSSV-------------SDVYGQA 162
P P S + PAPA A PA PA PV++ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 222
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD----- 232
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
R S P T A Q + A + A+ P G P L+FLRN
Sbjct: 233 --RESQAVVDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----------LEFLRN 280
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 332
QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 340
Query: 333 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 341 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 400
Query: 390 L 390
L
Sbjct: 401 L 401
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/166 (77%), Positives = 136/166 (81%), Gaps = 6/166 (3%)
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLIN 326
AGA TLDFLRNSQQFQALR MVQANPQI LQELGKQNPHLMRLIQEHQ DFLRLIN
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLIN 120
Query: 327 EPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 371
EPVEGGEG NVLGQLA+AMPQA++VTPEEREAIERLE MGFD LV
Sbjct: 121 EPVEGGEGTNVLGQLAAAMPQAISVTPEEREAIERLEQMGFDHDLV 166
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 223/431 (51%), Gaps = 71/431 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT----------- 109
E K+ E +FVVVM+TK K + + APA Q+ S+A T + T
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPA 114
Query: 110 --------TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----S 156
S TPAPT A + P SA PA P P + S+ S
Sbjct: 115 PASAPTPTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRS 174
Query: 157 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 215
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 216 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 272
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 275 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 330
Query: 329 VEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
V+ G G + A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 331 VQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 390
Query: 380 KNEELAANYLL 390
KNE LAAN+LL
Sbjct: 391 KNENLAANFLL 401
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 226/426 (53%), Gaps = 61/426 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV--------------SSSGASTVSAAPANQAQTTSSAPPTST 106
E K+ E +FVVVM+TK K +++ + S APA AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPA-VAQVPTPTPALAP 119
Query: 107 QPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQ 161
PT S TPA T +S P SA PA PA P + S+ S+++
Sbjct: 120 TPTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQ 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P A+ G + A +SG G P L
Sbjct: 237 AVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------L 275
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV---- 329
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 276 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 335
Query: 330 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 336 GQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 395
Query: 385 AANYLL 390
AAN+LL
Sbjct: 396 AANFLL 401
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 226/428 (52%), Gaps = 66/428 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K V+ APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPKA-------VTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPA 113
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV------SSV 155
P + P+ S TPAPT A + P SA P PA PA P A +P SS
Sbjct: 114 PALAPTPSPASITPAPTTASSEPAPASATQPEKPAEKPAETPV-ATSPTATDSTSGDSSR 172
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 173 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
G+ +Q P A + + P++ ++ G
Sbjct: 230 -----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGH 272
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 273 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 332
Query: 332 GEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 382
G G + + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 333 AGGQGGGGGGGSGGIGEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNE 392
Query: 383 ELAANYLL 390
LAAN+LL
Sbjct: 393 NLAANFLL 400
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/232 (59%), Positives = 154/232 (66%), Gaps = 29/232 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST-QPTTTSQTPAPTV 119
EN+VAENSF+V+ML+K+KVSSSGAS SAAP +S PP ST QP A TV
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLSTPQPL------ASTV 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S P P P SNL+AGS LE T+QQI
Sbjct: 115 GQGESNPAQGPVVTPPTTV----------------------VPESNLIAGSTLEPTIQQI 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P VA ++ GQ
Sbjct: 153 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 222/415 (53%), Gaps = 54/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA---------NQAQTTSSAPPTSTQPTTT 111
E K+ E FVVVM+TK K SS + PA ++ PT+T T
Sbjct: 61 EYKIDEEKFVVVMITKPK-SSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTETVP 119
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
+ T + +S + + +P+ + A SS+ DV A S LV G
Sbjct: 120 TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDV---ATSALVTGQQ 176
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG- 230
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNNP 228
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q A T + QPAAPAPTS N L+FLRN QF +R
Sbjct: 229 QQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQMR 267
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 346
++Q NP +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA Q
Sbjct: 268 QILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGEQ 325
Query: 347 A---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 326 QMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 154/426 (36%), Positives = 234/426 (54%), Gaps = 58/426 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TTS+ ++ + TP+P +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 121 PP---------------QSVPESAPPPAAPAPAPAPAP---APAPAPAPV--SSVSDVYG 160
P + +P SAP PA P AP +P + + + SS S+++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAPIGVSPTSSDSTLGDSSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDREN 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q+ V P AS G + A A A T+ +P
Sbjct: 238 QSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------------------- 278
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 329
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 279 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 338
Query: 330 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 339 GGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 398
Query: 385 AANYLL 390
AAN+LL
Sbjct: 399 AANFLL 404
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 217/421 (51%), Gaps = 59/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K A+ P+N T S T PAP A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----AAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPA 115
Query: 121 PPQSVPESAPPPAAPAPAPAP----------------APAPAPAPAPVSSVSDVYGQAAS 164
P P PAP P +P+ + +S S+++ A S
Sbjct: 116 PVPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDSTTGDTSRSNLFEDAIS 175
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--------- 223
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
QA P Q P T ++ + +P S+ G L+FLRN
Sbjct: 224 ---GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQP 272
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV----------- 329
QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F+ ++NEPV
Sbjct: 273 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVLESRQGLSGSD 332
Query: 330 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+G +G +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 333 DGASTGGIGDAGNAHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 392
Query: 390 L 390
L
Sbjct: 393 L 393
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 159/416 (38%), Positives = 222/416 (53%), Gaps = 41/416 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---STQPTTTSQTPAP 117
E ++ E FVV+M+TK K S A+ V+ P + S+ P+ TQP +Q PA
Sbjct: 60 EYEIDEKKFVVIMVTKPK-QSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKPAE 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T P +S PA +PA + A P P ++ + AAS LV G E VQ
Sbjct: 119 T---PSGTSKS------PAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQ 169
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-- 235
QI++MG ++R V RALRA++NNP+RAVEYL +GIP P A S G +
Sbjct: 170 QIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP--AEESHGATEESEEA 224
Query: 236 ----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
P+ T P + T+G PL+ L G N L FLR QFQ +R
Sbjct: 225 PRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-EDPLAFLRFQPQFQQMRQ 280
Query: 292 MVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMP 345
++Q NPQ +LQ+LG+ NP L++LI +Q F+R++NEP GG
Sbjct: 281 VIQQNPQLLNAVLQQLGQTNPQLLQLISRNQEAFVRMLNEPSPPPGGASQGGAPGGLGSG 340
Query: 346 QAVT------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
A VTP+++EAIERL+A+GF LV++ +FAC+KNE LAAN+LL ++
Sbjct: 341 GAPIEVNYGQVTPQDKEAIERLKALGFPEYLVVQAYFACDKNENLAANFLLSQNYD 396
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 221/415 (53%), Gaps = 67/415 (16%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 82 S---GASTVSAAPANQAQTTSSA--------PPTSTQPTTT--SQTPAPTVAPPQSVPES 128
+ + S PA A ++S+A P ++ PT+T S TPA T + P S
Sbjct: 161 TPVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPAS 220
Query: 129 APPPAAPAPAPAPAP-APAPAPAPV----SSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
A P PA PA +P +PAPA SS S+++ A S LV G + E V +I+ MG
Sbjct: 221 AAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 280
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP Q V P PP
Sbjct: 281 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------------PPQAV 325
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
P +PA + S+AG L+FLRN QFQ +R ++Q NP
Sbjct: 326 STGTPQSPAVAAAAATT--------TATTTSSAGGHPLEFLRNQPQFQQMRQIIQQNPSL 377
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------EGNVL 337
+LQ++G++NP L++ I +HQ F++++NEPV+ G +
Sbjct: 378 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGSGGGGI 437
Query: 338 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 438 AEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 492
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/193 (58%), Positives = 142/193 (73%), Gaps = 9/193 (4%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+S ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YL
Sbjct: 157 PLSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYL 216
Query: 211 YSGIPEQTAVP-PVARASAGGQAGNPPAQT----QAQQPAAPAPTSGPNANPLDLFPQGL 265
YSGIPE V PVA A + G + T + A + PN++PL++FPQ
Sbjct: 217 YSGIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQET 276
Query: 266 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDF 321
+ + G G+L+FLRN+ QFQALR MVQANPQI LQELGKQNPHL+RLIQEH +F
Sbjct: 277 LSGAAAGGLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEF 336
Query: 322 LRLINEPVEGGEG 334
L+LINEP+EG EG
Sbjct: 337 LQLINEPLEGSEG 349
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 224/428 (52%), Gaps = 66/428 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 232 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 270
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 271 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 330
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 331 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 390
Query: 385 AANYLLDH 392
AAN+LL
Sbjct: 391 AANFLLQQ 398
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 223/402 (55%), Gaps = 39/402 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN K++ V A +A + P + T + A A
Sbjct: 63 EN---------------KITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTA 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP P AA A A APA A ++S ++L+ G+ LE+T+ I+
Sbjct: 108 PAAEVPAQQPRAAAVPAAAAAAPAAGAAAGDLNS---------NSLLMGTQLESTIAGIV 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P A ++ A
Sbjct: 159 EMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAA 215
Query: 241 AQQPAAPAPTSGPNANPLDLF--PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
P SGPNA PLD+F G+ AG LDFLR++ QF ALR +VQ+NP
Sbjct: 216 GTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNPM 275
Query: 299 I----LQELGKQNPHLMRLIQEHQTDFLRLINEP--VEGGEGNVLGQLASAMP---QAVT 349
I LQELGKQNP L+ LI +Q +FLR+INEP V V L +A+P AV
Sbjct: 276 ILQPMLQELGKQNPELLTLINANQQEFLRIINEPPSVIMFWLTVRLLLFAALPPGAVAVH 335
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+T EE+ AI+RLE +GFDR +E F C ++E LAAN+L D
Sbjct: 336 LTEEEQAAIQRLETLGFDRNRCIEAFLLCERDETLAANFLFD 377
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/445 (33%), Positives = 222/445 (49%), Gaps = 81/445 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--------------------------------VSSSGASTVS 88
E K+ E +FVVVM+TK K ++ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 89 AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE--SAPPPAAPAPAPAPAPAPA 146
P ++ A PTS TTT AP + PE + PP +P+ P
Sbjct: 121 PVPLPLPTVSAPAAPTSELSTTT--------APKEEKPEEKTVSPPETESPSSTECSLPT 172
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ P ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RA
Sbjct: 173 DSSRP-----SLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRA 224
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
VEYL GIP + + GQA P + + P P P + A
Sbjct: 225 VEYLLMGIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------TTTV 268
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFL 322
+ G LDFL+N QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F+
Sbjct: 269 PSTPSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFI 328
Query: 323 RLINEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 373
+++N+PV GG V + S + VTP+E+EAIERL+A+GF LV++
Sbjct: 329 QMLNDPVPESGGQGGGGGGGRGVAAEAGSGQMNYIQVTPQEKEAIERLKALGFPEGLVIQ 388
Query: 374 VFFACNKNEELAANYLLDHMHEFED 398
+FAC KNE LAAN+LL F+D
Sbjct: 389 AYFACEKNENLAANFLLQ--QNFDD 411
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 155/425 (36%), Positives = 224/425 (52%), Gaps = 59/425 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-------------AAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K ++ A + + AQ + AP +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQA 162
PT S TPA T A + P SA PA PA P + S+ S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 218
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
V P AS G + A +SG G P L+
Sbjct: 238 VVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LE 276
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV----- 329
FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 330 ----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 337 QGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 396
Query: 386 ANYLL 390
AN+LL
Sbjct: 397 ANFLL 401
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 216/406 (53%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 154/406 (37%), Positives = 214/406 (52%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ T S T Q APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 P---APAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 216/406 (53%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 336
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 337 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 212/400 (53%), Gaps = 53/400 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTT-----------SQTPAPTVAPPQSVPESA 129
A+T + PA +SS P Q S TPAPT A + P SA
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 130 PPPAAPAPAPAPAPAPAPAPAPV------SSVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P PA PA P A +P SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TQPEKPAEKPAETPV-ATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 179
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 180 ---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRDSQAVVDT 219
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----I 299
P A + + P++ +N G L+FLRN QFQ +R ++Q NP +
Sbjct: 220 PPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPAL 279
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTV 350
LQ++G++NP L++ I +HQ F++++NEPV+ + + S + V
Sbjct: 280 LQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQV 339
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
TP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 340 TPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 379
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 157/459 (34%), Positives = 225/459 (49%), Gaps = 92/459 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVS- 88
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++ A +
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 89 -------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP 135
APA AQT + P + PT S TPA T A + P SA P
Sbjct: 121 QSNSATTTTVSSSTAPAV-AQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 136 APAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A PA P + S+ S+++ A S LV G + E V +I+ MG ++RE
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 191 TVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAA 246
VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATT 296
Query: 247 PAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQE 302
+SG G P L+FLRN QFQ +R ++Q NP +LQ+
Sbjct: 297 TTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 335
Query: 303 LGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPE 353
+G++NP L++ I +HQ F++++NEPV+ + + S + VTP+
Sbjct: 336 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQ 395
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 396 EKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 434
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 149/417 (35%), Positives = 219/417 (52%), Gaps = 53/417 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +++ +FVVVM TK K + + AA + ++APP +T S+ P
Sbjct: 61 EYNISDKNFVVVMATKPKTAPAATQPSPAA----SGPCTAAPPAPGACSTVSEVPTQQTT 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ E P AAPA P + P A ++ +A SNLV G + E+ V +I+
Sbjct: 117 KEDNAEEKPPSTAAPASTPEGGGSEVPTNA------NLIDEAVSNLVTGPSYESMVNEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE V+ ALRA++NNP+RAVEYL +GIP + GQA A+
Sbjct: 171 LMG---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGTTAEAT 217
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA---GTLDFLRNSQQFQALRTMVQAN- 296
+ A AP G A P G GS+ GA L FLRN QFQ +R ++Q N
Sbjct: 218 SAGVAPAAPLGGLRA------PTG---TGSSTGAERVNPLSFLRNQPQFQQMRQLIQQNA 268
Query: 297 ---PQILQELGKQNPHLMRLIQEHQTDFLRLINEP-----------VEGGEGNVLGQLAS 342
P +LQE+G++NP L++ I HQ F++++NEP + G +
Sbjct: 269 SLLPALLQEIGRENPELLQEISRHQEQFIQMLNEPNPEPVPGGGGGAAATAAGMAGTASG 328
Query: 343 AMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P + + VT +E+E+IERL+ +GF LV++ FFAC KNE +AAN+LL F+D
Sbjct: 329 ENPMRYIHVTAQEKESIERLKELGFPEGLVIQAFFACEKNENMAANFLLQ--QNFDD 383
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 223/435 (51%), Gaps = 81/435 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ------------------------ 96
E K+ E +FVVVM+TK K + + APA Q
Sbjct: 58 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPA 111
Query: 97 --TTSSAPPTSTQP--TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
++ P S P TT S PAP A Q P P A P A +PA +
Sbjct: 112 PALAPTSAPASIAPAVTTVSSEPAPASAAQQEKPSEKP---AETPV-ASSPASTDNTSGD 167
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 168 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 224
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P AS G AP S +A
Sbjct: 225 GIPGDRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTAATT 264
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRL 324
+++G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F+++
Sbjct: 265 TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 324
Query: 325 INEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 375
+NEPV GG + + S + VTP+E+EAIERL+A+GF LV++ +
Sbjct: 325 LNEPVQEAGSQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAY 384
Query: 376 FACNKNEELAANYLL 390
FAC KNE LAAN+LL
Sbjct: 385 FACEKNENLAANFLL 399
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 213/396 (53%), Gaps = 38/396 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K S++ S P Q + S + T + P+ A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + P P+ A PA S S A+S LV G+ EA + +I+
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGLD-ASSALVTGAEYEAMLTEII 179
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPP Q
Sbjct: 180 SMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPVQA- 224
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AP PT P + P G L FLRN QF +R +Q NP
Sbjct: 225 ----PAPLPTESPASPP--------------EGENPLAFLRNQPQFLHMRQAIQQNPNLL 266
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
+LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+E
Sbjct: 267 SALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGEMGAAGDEGSSVNYIQVTPQEKE 326
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
AIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 327 AIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 362
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 215/406 (52%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P S + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 159/267 (59%), Gaps = 42/267 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 237
++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN--- 203
Query: 238 QTQAQQPAAPAPTSG-PNANPLDLFPQ 263
T + P A SG PN PLDLFPQ
Sbjct: 204 -TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 215/406 (52%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC K E LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKRENLAANFLLQQ 383
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 212/401 (52%), Gaps = 57/401 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+T + A Q+ ++ +S+ T Q PAP V P P S P A + PAP
Sbjct: 58 AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPT 117
Query: 143 -------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDM 182
PA PA PV SS S+++ A S LV G + E V +I+ M
Sbjct: 118 SVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 177
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 178 G---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRESQAVVD 217
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL-- 300
P A + + P++ ++ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 218 TPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPA 277
Query: 301 --QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVT 349
Q++G++NP L++ I +HQ F++++NEPV+ G + + S +
Sbjct: 278 LLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQ 337
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 VTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 378
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 157/436 (36%), Positives = 212/436 (48%), Gaps = 124/436 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N V+E S V+ + K K +S+G ST APA+ +A P ST
Sbjct: 61 ANNVSEKS--VIGVIKKKPASTGTST---APASLTALVHAAHPYST-------------- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AA P PA AASN S E+ +QQIL
Sbjct: 102 ------------AAETPVTPTEPA---------------WDAASNGNYESISESNIQQIL 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL AY++ +A+EY+Y GIP ++ + + Q
Sbjct: 135 EMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKS-------------EDHYTTEEQ 181
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q+PA DL +LD LR++ +F+ LR +VQ++P +L
Sbjct: 182 TQEPAEA-----------DL-------------EWSLDSLRHTPEFEHLRPLVQSDPSLL 217
Query: 301 QE----LGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGE-GNVLG------------- 338
+ L KQNP RLIQ+++ DFLRL+ EP GG+ GN +G
Sbjct: 218 MDFLLMLKKQNPPFFRLIQDNKADFLRLLLEQPQEPNNGGDSGNQVGDSEETQVAQLPKE 277
Query: 339 ------------------QLASAMPQAVTV-TPEEREAIERLEAMGFDRALVLEVFFACN 379
Q+ + V V TPE+ E I+RLEA+GF+R +FACN
Sbjct: 278 LQADQTNEPNNGGGDGGNQVGESKEAKVEVATPEDYELIKRLEALGFERGDAAVAYFACN 337
Query: 380 KNEELAANYLLDHMHE 395
+N ++AAN+LL + HE
Sbjct: 338 RNLQVAANHLLGYKHE 353
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/212 (59%), Positives = 145/212 (68%), Gaps = 16/212 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SS SAAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSS------SAAPAK--VTANQAPSTQTVPATPPQTSAAPDA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP SAP A A A A D YGQA SNLVAGSNLE T++ IL
Sbjct: 113 PAPIVPVSAPAATATASAAPAVAVSTEA--------DSYGQATSNLVAGSNLEGTIKSIL 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+MGGG+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 165 EMGGGTWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 215/406 (52%), Gaps = 60/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 184
A PA PV SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 239
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 346
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGPMN 336
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 337 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/436 (35%), Positives = 225/436 (51%), Gaps = 111/436 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS-APPTSTQPTTTSQTPAPTV 119
E VA+ + V+M++K K PA + Q +S AP + +P+T + P
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQPSSEPAPSAAPKPSTPATEAPPAA 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q + PAP PA + AP+ AP S+ S Y +AS L+ G +LEATV QI
Sbjct: 107 PAVQP--------SQPAPPSTPAQS-APSTAPASTTS--YDASASALLTGESLEATVMQI 155
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------- 216
++MG ++RE V++ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 MEMG---FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSG 212
Query: 217 ---QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
++ P +S Q+Q QQ + T GP
Sbjct: 213 SGGGVSIDPEVLSSL---------QSQMQQHSESGGTGGP-------------------- 243
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPV 329
LDFLR+ QF LR ++QA PQ LQ ++G+Q+P ++R IQE+Q +F+RLINEPV
Sbjct: 244 ---LDFLRSDPQFAMLRGIIQARPQFLQPLLEQIGQQHPEVLRAIQENQDEFVRLINEPV 300
Query: 330 EGGEGNVLGQLASAMPQA-------------VTVTPEEREAIERLEAMGFDRALVLEVFF 376
+ Q + AM QA + +T EE EA+ RLEA+GF+R L LE +
Sbjct: 301 DQT------QFSQAM-QALEGRGEDEEGAVQIQLTQEEGEALARLEALGFNRQLALEAYL 353
Query: 377 ACNKNEELAANYLLDH 392
AC+KNEE+AANYL ++
Sbjct: 354 ACDKNEEMAANYLFEN 369
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 229/403 (56%), Gaps = 54/403 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ + +VS AP Q + S T+T+
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGS--------TSTAAPTTNPTP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG-QAASNLVAGSNLEATVQQI 179
P P + P P+ A + A A P P SS G A+S LV G+ EA + +I
Sbjct: 113 APAPAPAAVPIPSGEAKEESSAVATEPQ-QPASSSGGSQGLDASSTLVTGAEYEAMLTEI 171
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPPAQ
Sbjct: 172 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPAQ- 216
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN--- 296
APTSG P +P G L FLR QF +R +Q N
Sbjct: 217 --------APTSGTTEAP------SVPE-----GENPLAFLRTQPQFLHMRQAIQQNPAL 257
Query: 297 -PQILQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGEGNVLGQLASAMPQA-----VT 349
P +LQ+LG++NP L++ I +HQ F++++NEPV EGG+ +G++ +A + +
Sbjct: 258 LPALLQQLGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPEVGEMGAAGEEGAPVNYIQ 317
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
VTP+E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 318 VTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 360
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/414 (37%), Positives = 227/414 (54%), Gaps = 77/414 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K T S AP + + + A PT+ +PT +S A TV+P
Sbjct: 65 KIDEKNFVVVMVTKNK-------TGSGAPVS---SPTDAAPTA-EPTPSSGPTAATVSPL 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV--SDVYGQ---AASNLVAGSNLEATVQ 177
Q+ P S P P + +P + V SV S G+ AAS LV GS E +
Sbjct: 114 QASPSSEEKP------PEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLT 167
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G + A
Sbjct: 168 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP--------------GSSEPERA 210
Query: 238 QTQAQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q QP PAP G L+FLR+ QFQ +R ++Q N
Sbjct: 211 PIQESQPQDQPAP----------------------EGENPLEFLRDQPQFQNMRQVIQQN 248
Query: 297 ----PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAM 344
P +LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M
Sbjct: 249 PALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM 308
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 -NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 211/409 (51%), Gaps = 71/409 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPT-------------------TTSQTPAPTVAPPQ 123
+ + APA Q+ S+A T + T S TPAPT A +
Sbjct: 57 --AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSE 114
Query: 124 SVPESAPPPAAPAPAP-----APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P SA PA P A PA + + SS S+++ A S LV G + E V +
Sbjct: 115 PAPASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 175 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 231
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 232 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 270
Query: 295 ANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 347
NP +LQ++G++NP L++ I +HQ F++++NEPV+ G G + A
Sbjct: 271 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 330
Query: 348 ------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 331 GGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 379
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/439 (35%), Positives = 228/439 (51%), Gaps = 62/439 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP----- 115
E K+ E +FVVVM+TK K GAS S+AP+ +SA + + TP
Sbjct: 61 EYKIDEKNFVVVMVTKPK----GAS-CSSAPSPATSQPASAASPAPASPPLTYTPIARQN 115
Query: 116 APTVAP-PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS------------------ 156
AP P P S+P + P PAAP P+ AP +VS
Sbjct: 116 APIPLPVPFSLP-TVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDS 174
Query: 157 ---DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL G
Sbjct: 175 SRPSIFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 231
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP + QA P + + P P + P PL + +
Sbjct: 232 IP----------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPST 281
Query: 274 AGT----LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI 325
T LDFL+N QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++
Sbjct: 282 PSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQML 341
Query: 326 NEPV------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
N+PV GG V + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 342 NDPVPEGGREGGGGRGVAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 401
Query: 380 KNEELAANYLLDHMHEFED 398
KNE LAAN+LL F+D
Sbjct: 402 KNENLAANFLLQ--QNFDD 418
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 157/408 (38%), Positives = 219/408 (53%), Gaps = 64/408 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T + APT P P SA A+P PAPA
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPA 119
Query: 141 PA-----PAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDM 182
A PA PA PV+S S+++ A S LV G + E V +I+ M
Sbjct: 120 SATKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 179
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPA 237
G ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPPQAASTGAPQSSAVAA 236
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 237 AAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNP 275
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAM 344
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 276 SLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGH 335
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 336 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 383
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/411 (36%), Positives = 228/411 (55%), Gaps = 43/411 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
P + P S P APA PVSS S +++ +A S LV G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSALVTGQSYENMV 165
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 166 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 222
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQA 295
A A PA S P++ P S+A GA L+FLRN QF +R ++Q
Sbjct: 223 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQ 272
Query: 296 NPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---- 347
NP +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 273 NPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNY 332
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 381
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 174/488 (35%), Positives = 241/488 (49%), Gaps = 99/488 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSK-----------------------------------VSSSGAS 85
E K+ E +FVVVM+TK K V S+
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 86 TVSAA-PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP------- 137
T SAA PA+Q+ S APP+ + TT + A S ESAP + AP
Sbjct: 122 TTSAAVPASQSVPPSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGSTAPVASSTAP 181
Query: 138 -----APAPAPAPAPAPA-------------------PV----SSVSDVYG---QAASNL 166
APA P+ +P PA PV SS+ D G +AAS L
Sbjct: 182 EAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASIL 241
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + + +
Sbjct: 242 VTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASDLHNPQP 298
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT------L 277
S NP + + P P N +++F QG P GS AG G+ L
Sbjct: 299 SRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSGSIGNPL 356
Query: 278 DFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
+FLRN QFQ +R ++Q NP +L L G+ NP L++ I EHQ F++++NEP G
Sbjct: 357 EFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQERFVQMLNEPQAGDT 416
Query: 334 GNVLGQLASAM----PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
G G+ A A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 417 G---GEDADAHGSPHTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 473
Query: 390 LDHMHEFE 397
L + E
Sbjct: 474 LQQTWDDE 481
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 224/415 (53%), Gaps = 77/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ APA +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 212/401 (52%), Gaps = 51/401 (12%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T + PA +S+ P Q T+ APT P P S + PAPA A
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMGG 184
PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP R S P T A Q
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGD-------RESQAVVDTPPAVSTGAPQS 231
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----IL 300
+ A + A+ P G P L+FLRN QFQ +R ++Q NP +L
Sbjct: 232 SVAAAAATTTASTTTASPGGHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALL 281
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVT 351
Q++G++NP L++ I +HQ F++++NEPV+ + + S + VT
Sbjct: 282 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVT 341
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 342 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 218/408 (53%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 223/415 (53%), Gaps = 76/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 70 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 115
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 116 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 171
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 172 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 218
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 219 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 255
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 256 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 314
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 367
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 223/415 (53%), Gaps = 76/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 309
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 218/408 (53%), Gaps = 63/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 223/415 (53%), Gaps = 77/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 215/416 (51%), Gaps = 85/416 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K A PA +S PP + P + A T+ P
Sbjct: 65 KIDEKNFVVVMVTKAK----------AGPA------TSVPPEPSAPAS-----ANTLEPS 103
Query: 123 QSVPESAPPPAAPAPAPAP--------------APAPAPAPAPVSSVSDVYGQAASNLVA 168
P + A P P PAP P P P S S AAS LV
Sbjct: 104 TPTPPAPTIVAMPLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVT 163
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP S
Sbjct: 164 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP----------GSP 210
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
++G P Q ++Q P PAP G N L+FLR+ QFQ
Sbjct: 211 EPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLRDQPQFQN 246
Query: 289 LRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLG 338
+R ++Q NP +LQ+LG++NP L++ I HQ F++++NEP + EG V G
Sbjct: 247 MRQVIQQNPSLLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-G 305
Query: 339 QLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 306 AIGEESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 361
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 218/408 (53%), Gaps = 63/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 82 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 138
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 139 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 237
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 238 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 273
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 274 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 332
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 378
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 225/440 (51%), Gaps = 67/440 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP- 117
E K+ E +FVVVM+TK K SS + ++ PA+ A ++PP + P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 118 ---------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV-SSV 155
T AP + PE +P +P+ P SS
Sbjct: 121 PVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEE----KTDSPQETVSPSSTECSLPTDSSR 176
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 PSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 233
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
+ GQA P QT + P P P + A + G
Sbjct: 234 ----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPSTGGN 277
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV-- 329
LDFL+N QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 278 PLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPVPE 337
Query: 330 -----------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 378
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 338 SGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 397
Query: 379 NKNEELAANYLLDHMHEFED 398
KNE LAAN+LL F+D
Sbjct: 398 EKNENLAANFLLQ--QNFDD 415
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 223/415 (53%), Gaps = 77/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 217/408 (53%), Gaps = 63/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA + G L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL FED
Sbjct: 316 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 361
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 222/415 (53%), Gaps = 76/415 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFLPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 345
N P +LQ+LG++NP L++ I HQ F++++NEP + E V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAP 309
Query: 346 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 221/419 (52%), Gaps = 46/419 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E K+ E +FVVVM+TK K +++ + T + + T +S P + + PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 119 ------VAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVS--------SVSDVYGQAA 163
+ ESAP A PA P PA +P S S S+++ A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD------ 231
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
R S G +PP Q + A S A S+ G L+FLRN
Sbjct: 232 -RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTGGHPLEFLRNQ 283
Query: 284 QQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------G 331
QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 284 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGQGSGGS 343
Query: 332 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
G G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 344 GSGGGVVEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 220/423 (52%), Gaps = 93/423 (21%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK K +G T+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKGK---AGQGTL-------------APPEIS----------PTAAPE 98
Query: 123 QSVP---ESAPPPAAPAPAPAPAPAPAPAPAPVSS------------VSDVYGQAASNLV 167
S P SAP + P+PA +P+ AP +S S AAS LV
Sbjct: 99 PSAPFQLTSAPGMSHPSPATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP S
Sbjct: 159 TGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP----------GS 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ G+ ++QPA + AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQASEQPA------------------------TEAGENPLEFLRDQPQFQ 241
Query: 288 ALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 337
++R ++Q N P +LQ+LG++NP L++ I HQ F++++NEP V EG V
Sbjct: 242 SMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADVSDVEGEV- 300
Query: 338 GQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 301 GAMGEDAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QN 358
Query: 396 FED 398
F+D
Sbjct: 359 FDD 361
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 217/408 (53%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 209/401 (52%), Gaps = 63/401 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK-AAA 59
Query: 83 GASTVS----------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVP 126
GA+ S AP A P P + AP AP
Sbjct: 60 GATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPE---- 115
Query: 127 ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 186
E P P P A +P+ + +S S+++ A S LV G + E V +I+ MG
Sbjct: 116 EEKPAEKTPEPPAAISPSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG--- 172
Query: 187 WDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQP 244
++RE VI ALRA++NNP+RAVEYL GIP Q P AS G +Q+
Sbjct: 173 YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPSQAASTGA--------SQSSTV 224
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL---- 300
A T +P S+ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 225 ATSVAT--------------IPMTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALL 270
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEP-VEG-------GEGNVLGQLASA---MPQAVT 349
Q++G++NP L++ I +HQ F+ ++NEP VE +G +G +A A +
Sbjct: 271 QQIGRENPQLLQQISQHQEHFIHMLNEPAVESRQGLSGSDDGASIGGVAEAGNGHMNYIQ 330
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 331 VTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 371
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 201/395 (50%), Gaps = 55/395 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P V
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSP---VT 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + + P AP SS + G S+LV G N E V++++
Sbjct: 109 EANEAPSSKPDANSQSNLPTVTTAP-------SSATSTLGFGESSLVTGENFERVVKELM 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 162 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 208
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP-- 297
++ P P T P G ++GS L L QFQ +R +VQANP
Sbjct: 209 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 255
Query: 298 --QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
Q++Q++G N L RLIQE++ FL IN PV G + S +T+T EER
Sbjct: 256 LPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEER 310
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 311 AAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 345
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 223/409 (54%), Gaps = 64/409 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-P 121
++ E +FVVVM+TK+K +S G S A +S+A P S+ TT+ PA ++ P
Sbjct: 82 RIDEKNFVVVMVTKAK-NSPGTSVPPEA-------SSTAAPESS--TTSPSAPASGMSHP 131
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
P ++ E P P +P P+ SS + AAS LV GS E + +I+
Sbjct: 132 PPTIREDKSPSEESVPTTSPESVSGSVPSSGSSGRE--EDAASTLVTGSEYETMLTEIMS 189
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 190 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 236
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----P 297
+QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 237 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 273
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 349
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 274 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 332
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 379
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 217/408 (53%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAGED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + E V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 220/410 (53%), Gaps = 65/410 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + SGA AP T++S P S+ T T A + P
Sbjct: 65 KIDEKNFVVVMVTKNK-AGSGA----PAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPA 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
E PP +P + + P+ D AAS LV GS E + +I+ M
Sbjct: 120 APSGEEKPPEEPVTVSPQESIVSSIPPSGSMGRED---DAASTLVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGI---------------------------- 205
Query: 243 QPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
P +P P GP + P + Q +P G L+FLR+ QFQ +R ++Q N
Sbjct: 206 -PGSPEPERGPIQESQPQE---QPVPE-----GENPLEFLRDQPQFQNMRQVIQQNPALL 256
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAMPQAV 348
P +LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M +
Sbjct: 257 PALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM-NYI 315
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 363
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 218/408 (53%), Gaps = 62/408 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQ--TPAPTVAPPQSVPESAPPPAAPAPAPA 140
ST S A Q+ ++ +S+ + +Q TP+P +AP + P PAA A P
Sbjct: 154 --STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPI 211
Query: 141 PA-------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA P APV SS S+++ A S LV G + E V +I+
Sbjct: 212 PTSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIM 271
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPP 236
MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 272 SMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAAQSSAV 328
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A A T+ +P L+FLRN QFQ +R ++Q N
Sbjct: 329 AAAAATTTATTTTTTTSGGHP-------------------LEFLRNQPQFQQMRQIIQQN 369
Query: 297 PQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV--------EGGEGNVLGQLASAM 344
P +LQ++G++NP L++ I +HQ F++++NEPV GG + + S
Sbjct: 370 PSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGGGSGGIAEAGSGH 429
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 430 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 477
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 217/408 (53%), Gaps = 63/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QP+ + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/416 (35%), Positives = 220/416 (52%), Gaps = 79/416 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ + A+ PT+ T+T+ PAP
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGTSAPLEAS------------PTAASETSTTFLPAPASGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ P +P S S AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP-----------------GSP 206
Query: 236 -PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
P + Q+ S + P + AG L+FLR+ QFQ +R ++Q
Sbjct: 207 EPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFLRDQPQFQNMRQVIQ 248
Query: 295 AN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 344
N P +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 249 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 307
Query: 345 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 308 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 216/408 (52%), Gaps = 63/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA + G L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 257 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 315
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 154/409 (37%), Positives = 218/409 (53%), Gaps = 70/409 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q + TP P +A P S P S P +A A +
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALA-PTSTPASITPASATASSEP 116
Query: 141 PA--------PAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEATVQQI 179
+ PA PA PV SS S+++ A S LV G + E V +I
Sbjct: 117 ASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEI 176
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGN 234
+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+
Sbjct: 177 MSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSA 233
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 234 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 272
Query: 295 ANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLA 341
NP +LQ++G++NP L++ I +HQ F++++NEPV+ + +
Sbjct: 273 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 332
Query: 342 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 333 SGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 207/409 (50%), Gaps = 71/409 (17%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQ-------------------TTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ + APA Q + AP + PT S TPA T A +
Sbjct: 58 --AVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSE 115
Query: 124 SVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNLVAGSNLEATVQQ 178
P SA PA PA AP + S+ S+++ A S LV G + E V +
Sbjct: 116 PAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 175
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 234
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 176 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 232
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 233 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 271
Query: 295 ANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLA 341
NP +LQ++G++NP L++ I +HQ F++++NEPV+ + +
Sbjct: 272 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 331
Query: 342 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 332 SGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 380
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 227/411 (55%), Gaps = 45/411 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS----DVYGQAASNLVAGSNLEATV 176
P + P S P APA PVSS S +++ +A S L G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSAL--GQSYENMV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 164 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 220
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQA 295
A A PA S P++ P S+A GA L+FLRN QF +R ++Q
Sbjct: 221 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQ 270
Query: 296 NPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---- 347
NP +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 271 NPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNY 330
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 331 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 379
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 207/409 (50%), Gaps = 67/409 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + APA++ ++ A P T P
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLT-----------P 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S E P A P P P P S AAS LV GS E + +I+ M
Sbjct: 114 SSPKEER--PTADNPTSLPPPETVTGSVPSSGSIGREDDAASTLVTGSEYETMLTEIMSM 171
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 172 G---YEQEQVVAALRASFNNPHRAVEYLLMGI---------------------------- 200
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
P +P P GP Q G L+FLR+ QFQ +R ++Q N P
Sbjct: 201 -PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLRDQPQFQNMRQVIQQNPALLPA 254
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP---------VEGGEGNVLGQLASAMPQAVT 349
+LQ+LG++NPHL++ I HQ F++++NEP +E GE +G + M +
Sbjct: 255 LLQQLGQENPHLLQQISLHQEQFIQMLNEPSGELGDMSDIE-GEIGAIGDEPTQM-SYIQ 312
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 313 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 205/406 (50%), Gaps = 84/406 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+VVM+TK K+ PA A ++ S P T QT T
Sbjct: 60 EYKIDEKKFIVVMVTKPKL----------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSN 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA V+S + +GQA S L+ G +++ I+
Sbjct: 110 EP------------------------PASENVNSGAS-FGQAESALLMGDEYNQSLRNIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + +E V RALRA++NNP+RAVEYL +GIP + V + GG+
Sbjct: 145 DMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--SDVDDTESSDVGGEE-------N 192
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
P P T G +PL FLR+ QFQ +R ++QANPQ
Sbjct: 193 TLNPLTPD-TCGNEEDPLA-------------------FLRSQPQFQQMRQVIQANPQLL 232
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------GEGNVLGQLASAM-- 344
+LQ++G+ NP L+++I ++Q F+R++NEP G G V G AS +
Sbjct: 233 NAVLQQIGQTNPALLQIISQNQDAFVRMLNEPGTGSGATPAPPAAGGNPVSGGAASNVFP 292
Query: 345 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
P + VTP+++EAIERL+A+GF LVLE +FAC+KNE LAAN+LL
Sbjct: 293 PSVIQVTPQDKEAIERLKALGFPEHLVLEAYFACDKNENLAANFLL 338
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 216/415 (52%), Gaps = 60/415 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 332
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 333 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
+ + S + VTP+E+EAIER+ + LVL ACN
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERVSLSKTLKKLVLGWAHACN 391
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 151/409 (36%), Positives = 222/409 (54%), Gaps = 64/409 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +SSG S A + A +S++ P + + S TP PTV
Sbjct: 65 RIDEKNFVVVMVTKAK-NSSGTSVPPEASSTAAPESSTSFPLAP-ASGMSHTP-PTVRED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P A+P P+ S S AAS LV GS E + +I+ M
Sbjct: 122 RSPSEESVPTASPESVSGSVPS--------SGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----P 297
Q+ TS P AG L+FLR+ QFQ +R ++Q N P
Sbjct: 214 QESQVSEQTS---TEP--------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 349
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDIEGEV-GAIGEEAPQMNYIQ 315
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 217/414 (52%), Gaps = 74/414 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S S P A PT+ ++TS +PAP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPG----TSVPP--------EASPTAAPESSTSFSPAPASGMS 112
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP A +P+ P +P VS G AAS LV GS E +
Sbjct: 113 HS-----PPTAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QPA A AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 297 ----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 346
P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 347 A--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 311 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 220/438 (50%), Gaps = 68/438 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TT+ + T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 121 PPQSVPESAPP-PAAPAPAPAPAPAPAP---APAPVS----------------SVSDVYG 160
S P + PP PAA PAP +P A P+ S S+++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 216
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
Q P AS G A A T+ S+ G
Sbjct: 238 QGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTT-----------------TSSTGGHP 280
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 340
Query: 333 --------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
G V + S + VTP+E+EAIERL+A+GF LV+
Sbjct: 341 GQGGGGSGGGGGGGGGGGGGGGGVAAEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVI 400
Query: 373 EVFFACNKNEELAANYLL 390
+ +FAC KNE LAAN+LL
Sbjct: 401 QAYFACEKNENLAANFLL 418
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/428 (34%), Positives = 222/428 (51%), Gaps = 72/428 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSS-----SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E K+ E +FVVVM+ K KV+ SGA+T + + ++A S P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNP------- 113
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P PE P P+ APA P + +++V +++ +A S LV G + E
Sbjct: 114 -----PEGGKPEDKPAEERPSNTSAPASTPTSSSGLLANV-NMFEEATSALVTGQSYENM 167
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQ 231
V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP + PV GG
Sbjct: 168 VTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGG- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQ 287
PA +G P + GS A A T L FL N QF
Sbjct: 224 --------------TPALNTGSMTTP--------ASTGSLASAATGANPLGFLVNQPQFL 261
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEP-------------VE 330
+R ++Q NP +LQ++G++NP L++ I HQ F++++NEP
Sbjct: 262 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEGGQGGGGVGGGG 321
Query: 331 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
G V G+ S M + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 322 GVGVGVGGEAGSGM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 380
Query: 391 DHMHEFED 398
F+D
Sbjct: 381 Q--QNFDD 386
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 225/446 (50%), Gaps = 83/446 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPA 116
++ V E+SF+VVM K + +S+ + A +A+TT TS + S T A
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T+ A + P +S+ V GS E TV
Sbjct: 120 VTINNNDRDETKATSSSQPTSG-----------------------TSSDFVIGSQYETTV 156
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAG 229
+ +++MG ++ + V RALRAA++NP+RAVEYL++GIPE QT++P G
Sbjct: 157 KNLMEMG---FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVG 213
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPN----ANPLDLF-PQ--------GLPNMGSNAGAGT 276
TQ + + +S N + P ++F PQ G + GS G+
Sbjct: 214 ---HTDRTATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TGS 267
Query: 277 LDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LDFL QF +R ++QANP+I LQEL + NP L+ LI ++Q +F+RL+NEP E
Sbjct: 268 LDFLTRIPQFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTEDS 327
Query: 333 EG----------NVLGQLA--------SAMPQAVTVTPEEREAIERLEA----MGFDRAL 370
EG N + L+ S+ + V+PEERE IERLE+ MG RA
Sbjct: 328 EGLSDEQVQELLNSISGLSEGGNTGEESSGVSYIQVSPEEREQIERLESLVGPMGVSRAA 387
Query: 371 VLEVFFACNKNEELAANYLLDHMHEF 396
+LE + AC++NEELAANY+L ++ E+
Sbjct: 388 ILEAWLACDRNEELAANYILSNLEEY 413
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 60/408 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QP+ + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 224 QPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 259
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 260 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQV 318
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 319 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 364
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 150/415 (36%), Positives = 223/415 (53%), Gaps = 71/415 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM++K+K S G S + P+ +SS+ +S P +
Sbjct: 61 EYKIDEKNFVVVMVSKTK--SPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---AASNLVAGSNLEATVQ 177
P PPA +PA +P +DV G+ A+S LV G +A +
Sbjct: 119 FTDECPRD-DPPATVSPASSP-----------DGGTDVVGEGEDASSTLVTGQEYDAMLT 166
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I+ MG ++R+ V+ AL+A+YNNP RAVEYL +GIP PV Q NP
Sbjct: 167 NIMSMG---YERDKVVAALKASYNNPHRAVEYLLNGIP----TVPV-------QETNPAP 212
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ P PT G N L+FLR+ QFQ++R ++Q NP
Sbjct: 213 ---AQLPTDTQPTEGENP---------------------LEFLRSQPQFQSMRQVIQQNP 248
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--------LGQLAS-AM 344
+LQ+LG++NP L++ I +HQ F++++N PV GEG + LG + A
Sbjct: 249 SLLPALLQQLGQENPELLQQISQHQELFIQMLNAPVGEGEGELGEGGEFADLGAIGDEAA 308
Query: 345 PQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P + + VT +E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ FED
Sbjct: 309 PGSFIQVTQQEKEAIERLKALGFSEALVVQAYFACEKNENLAANFLLN--QNFED 361
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 218/423 (51%), Gaps = 92/423 (21%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G ST+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKAK---AGQSTL-------------APPEVS----------PTAAPE 98
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG------------QAASNLV 167
S P P + P PA +P+ A +S V G AAS LV
Sbjct: 99 PSTPFQLSPASGMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLV 158
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
GS E + +I+ MG ++RE VI ALRA+YNNP RAVEYL +GIP +
Sbjct: 159 TGSEYETMLMEIMSMG---YERERVIAALRASYNNPHRAVEYLLTGIP----------GN 205
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ G+ ++QPA A AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQ 242
Query: 288 ALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 337
+R ++Q N P +LQ+LG++NP L++ I HQ F++++NEP + EG V
Sbjct: 243 NMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV- 301
Query: 338 GQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 302 GAIGEDAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QN 359
Query: 396 FED 398
F+D
Sbjct: 360 FDD 362
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 214/408 (52%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ +P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPA---PASGMSHPPPTAKED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTMSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + + ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHSSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A G L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------VGDNPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 155/418 (37%), Positives = 215/418 (51%), Gaps = 50/418 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVS--SSG---ASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E + E FVV+M+TK K SSG AS V AAP + T + A S T + P
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGAT-KGP 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
+S + PP A A AP + S A S LV G + +
Sbjct: 119 EAAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQRM 178
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA-----VPPVARASAGG 230
V QI++MG +D+ V RALRA++NNP+RAVEYL +G E PP A S G
Sbjct: 179 VSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQSPGR 235
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
+A PP A P T G +GS L FLR QFQ +R
Sbjct: 236 EAAAPPG-------ALPLSTEG---------------LGSGGAEDPLAFLRFQPQFQQMR 273
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL------GQL 340
++Q NPQ +LQ++G+ NP L++LI ++Q F+R++NEP G+ G L
Sbjct: 274 QVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLNEPSPPPGGSGGRTPPAAGAL 333
Query: 341 ASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
S P V VTP+++EAIERL+A+GF LV++ +FAC+KNE LAAN+LL ++
Sbjct: 334 GSGAPLEVNYGQVTPQDKEAIERLKALGFPEYLVIQAYFACDKNENLAANFLLSQNYD 391
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 198/395 (50%), Gaps = 68/395 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSPVT--- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A AP+ AP SS + G S+LV G N E V++++
Sbjct: 109 -----------EANEAPSITTAP---------SSATSTLGFGESSLVTGENFERVVKELM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R VI+A+RA +NNP+RA EYL SG IP V ++
Sbjct: 149 SMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREES 195
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP-- 297
++ P P T P G ++GS L L QFQ +R +VQANP
Sbjct: 196 ESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPEL 242
Query: 298 --QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
Q++Q++G N L RLIQE++ FL IN PV G + S +T+T EER
Sbjct: 243 LPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEER 297
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 298 AAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 332
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 208/428 (48%), Gaps = 97/428 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + A+ + T + +TTS P P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTA---------AEEDHTNTETKEESSTTSSVPEPSSN 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV ++ P + A + A A GQA S L+ G N V I+
Sbjct: 109 P--SVQGASNPVSTAQEQSAASTATECAG----------GQAESALLMGENYNTMVNNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 202 AQE------------------------QFQDHGQHPLAFLRMQPQFQQMREVIQQNPQLL 237
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------------------GEG 334
LQ++G+ NP L++LI ++Q F+R++NEPVE G G
Sbjct: 238 NAMLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVAPTSAPGGG 297
Query: 335 NVLGQLASAM-------PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
N G +A A + +TP+++EAIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 298 NS-GPVAGARRGGPFVETSIIEITPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAAN 356
Query: 388 YLLDHMHE 395
+LL +H+
Sbjct: 357 FLLSQIHD 364
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 147/435 (33%), Positives = 212/435 (48%), Gaps = 116/435 (26%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
S + G+ +QPA A AG
Sbjct: 204 ----------GSPEPEHGSVQESQAPEQPATEA-----------------------AGEN 230
Query: 276 TLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP--- 328
L+FLR+ QFQ +R ++Q N P +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 231 PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGE 290
Query: 329 ---VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
+ EG V G L PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE
Sbjct: 291 LADISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNEN 349
Query: 384 LAANYLLDHMHEFED 398
LAAN+LL F+D
Sbjct: 350 LAANFLLS--QNFDD 362
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 209/416 (50%), Gaps = 84/416 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 83 GASTVSAAPANQAQTT--------------------------SSAPPTSTQP--TTTSQT 114
+ + APA Q+ ++ PTS P TT S
Sbjct: 283 --AVTTPAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSE 340
Query: 115 PAPTVAPPQSVPESAP---PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSN 171
PAP A Q P P P AA +P + + SS S+++ A S LV G +
Sbjct: 341 PAPASATQQEKPTEKPTETPVAA-------SPTSTDSTSGDSSRSNLFEDATSALVTGQS 393
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARAS 227
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS
Sbjct: 394 YENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAAS 450
Query: 228 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G T +A +++G L+FLRN QFQ
Sbjct: 451 TG--------------------TPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQ 490
Query: 288 ALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV------- 336
+R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 491 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGS 550
Query: 337 --LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 551 GGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 606
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/408 (36%), Positives = 214/408 (52%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + G S AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-AGQGIS----APPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +A+
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQRAE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 217/414 (52%), Gaps = 74/414 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P PA ++ P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFP----------LAPASGMSHP 114
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
P PA +P+ P +P VS G AAS LV GS E +
Sbjct: 115 -------PSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QP PT NP L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQP----PTEAAGENP-------------------LEFLRDQPQFQNMRQVIQQN 251
Query: 297 ----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 346
P +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 347 A--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 311 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 206/423 (48%), Gaps = 81/423 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL-GQLASAMP--- 345
Q NPQ +LQ++G+ NP L++LI ++Q F+R++NEPV G SA P
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVGAASGGSTPASAISATPPVA 310
Query: 346 ----------------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+L
Sbjct: 311 PGGLGAGAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFL 370
Query: 390 LDH 392
L
Sbjct: 371 LSQ 373
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 203/404 (50%), Gaps = 62/404 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA-V 348
Q NPQ +LQ++G+ NP L++LI ++Q F+R++NEPV G +
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVAPGGLGAGAGAGVPGGPGVI 310
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 311 QISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 354
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 227/435 (52%), Gaps = 70/435 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPP-----------PAAPAPAPA--------PAPAPAPAPAPV 152
P V P SV P +APP P + PAPA A A + A +
Sbjct: 121 P-VEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+ + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN-----ANPLDLFPQGLPN 267
GIP ++ PP Q+ P P S P G +
Sbjct: 237 GIPAESEQPP-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAES 277
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLR 323
G+ A A L+FLR+ QFQ +R ++Q NP +LQ+LG+ NP L++ I +HQ F++
Sbjct: 278 GGAQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQ 337
Query: 324 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
++N A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 338 MLN-------EPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 390
Query: 384 LAANYLLDHMHEFED 398
LAAN+LL F+D
Sbjct: 391 LAANFLLQ--QNFDD 403
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 139/396 (35%), Positives = 197/396 (49%), Gaps = 85/396 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM VS GA + P T SS P + SQ
Sbjct: 61 EYKIDERNFVVVM-----VSKVGAGNQTHRP-----TVSSRPLAFCSSSDGSQGL----- 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+S LV G+ EA + +I+
Sbjct: 106 ----------------------------------------DASSALVTGAEYEAMLTEII 125
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP RAVEYL +GIP PV ++ QA A
Sbjct: 126 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPVQESNPPAQAP---APLP 175
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ PA+PA P A P G L FLRN QF +R +Q NP +L
Sbjct: 176 TESPASPAEGCFP-ACP---------------GENPLAFLRNQPQFLHMRQAIQQNPNLL 219
Query: 301 ----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
Q+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+E
Sbjct: 220 SALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGELGAAGEEGSSVNYIQVTPQEKE 279
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
AIER +A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 280 AIERFKALGFPEALVIQAYFACEKNENLAANFLLNQ 315
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 199/394 (50%), Gaps = 67/394 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
+LQ++G+ NP L++LI ++Q F+R++NEP +GG G +G + + VTP+++E
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPGDGGLGAGIGAGSDVEASVIQVTPQDKE 297
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 298 AIERLKALGFPEHLVVQAYFACEKNENLAANFLL 331
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 206/396 (52%), Gaps = 61/396 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG +++ VIRA+RA +NNP+RA EYL SG IP V + P+Q
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPSQ 200
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP- 297
+ + +P P D G + GS L L QFQ +R +VQANP
Sbjct: 201 REGSESVSPEA-------PGDADTPGSESAGSEDPIAALASL---PQFQQMRALVQANPE 250
Query: 298 ---QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
Q++Q++G N L RLIQE++ FL +N PV G + A +T+T EE
Sbjct: 251 LLPQLIQQIGNDNADLFRLIQENEQAFLEFLNTPVTG-----TTRPAGQRQTILTMTAEE 305
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
R A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 306 RAAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 341
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 211/409 (51%), Gaps = 65/409 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----P 297
Q+ AP + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 349
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 314
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 146/409 (35%), Positives = 211/409 (51%), Gaps = 65/409 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 82 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 133
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 134 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 190
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 191 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 230
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----P 297
Q+ AP + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 231 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 272
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 349
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 273 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 331
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 332 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 378
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 203/413 (49%), Gaps = 71/413 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSVSDVYGQAASNLVAGSNLE 173
+ P V E+A P + P P AP P A P P S + ++A L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSNPPESA--LLMGEEYN 168
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 169 AMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF-------------E 212
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 293
+PP + Q A PA +AG L FLR QFQ +R ++
Sbjct: 213 DPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQVI 250
Query: 294 QANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLGQ 339
Q NPQ +LQ++G+ NP L++LI ++Q F+R++NEP G
Sbjct: 251 QQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPASAISATPPVAPGGLGAGAGA 310
Query: 340 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
P + ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 311 GVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 363
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 211/408 (51%), Gaps = 62/408 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 202/388 (52%), Gaps = 62/388 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 61 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAREDKSPSEES--------APTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA A
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPATEA-------------- 202
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQ 318
AG L+FLR+ QFQ +R ++Q NP +L L G++NP L++ I HQ
Sbjct: 203 ---------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 253
Query: 319 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRAL 370
F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +L
Sbjct: 254 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 312
Query: 371 VLEVFFACNKNEELAANYLLDHMHEFED 398
V++ +FAC KNE LAAN+LL F+D
Sbjct: 313 VIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 202/419 (48%), Gaps = 93/419 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K S++ ++ ++ +T ST + +P PTV
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTS------DEQRTEGDNKEESTSSSVAQPSPNPTV- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q +A A PA GQA S L+ G + V+ I+
Sbjct: 111 --QDTSRAASTVQEQIAAAVPAAG--------------CGQAESALLMGEDYNTMVKNIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQT 239
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP AQ
Sbjct: 155 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQE 202
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
Q Q + L FLR QFQ +R ++Q NPQ
Sbjct: 203 QLQ----------------------------DQSQDPLAFLRMQPQFQQMRQVIQQNPQL 234
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL--------------- 337
+LQ++G NP L++LI ++Q F+R++NEPVE G VL
Sbjct: 235 LNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPTAGAGARVLPAGGVASAAASGGLT 294
Query: 338 ----GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
A+ + +TP++R+AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 295 GSAGTGAAAGAGGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANFLLSQ 353
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 207/395 (52%), Gaps = 77/395 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 204
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA-----PAP 137
G T SA P A PT+ ++TS PAPT S PPPAA P+
Sbjct: 205 GQGT-SAPP--------EASPTAAPESSTSFLPAPTSG------MSHPPPAAREDKSPSE 249
Query: 138 APAPAPAPAPAPAPVSSVSDVYGQ--AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 195
AP +P V S + AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 250 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 306
Query: 196 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 255
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 307 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 346
Query: 256 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLM 311
+ AG L+FLR+ QFQ +R ++Q NP +L L G++NP L+
Sbjct: 347 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 392
Query: 312 RLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEA 363
+ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A
Sbjct: 393 QQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKA 451
Query: 364 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 452 LGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 484
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 202/388 (52%), Gaps = 62/388 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 61 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 109
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 110 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 166
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA T G NPL+
Sbjct: 167 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----TEGAGENPLE--- 209
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQ 318
FLR+ QFQ +R ++Q NP +L L G++NP L++ I HQ
Sbjct: 210 ----------------FLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 253
Query: 319 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRAL 370
F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +L
Sbjct: 254 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 312
Query: 371 VLEVFFACNKNEELAANYLLDHMHEFED 398
V++ +FAC KNE LAAN+LL F+D
Sbjct: 313 VIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 63/388 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 185
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P +S E + AP +
Sbjct: 186 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAREDKSPSEES--------APTTS 234
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 235 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 291
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 292 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 324
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQ 318
+ AG L+FLR+ QFQ +R ++Q NP +L L G++NP L++ I HQ
Sbjct: 325 -------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 377
Query: 319 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRAL 370
F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +L
Sbjct: 378 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 436
Query: 371 VLEVFFACNKNEELAANYLLDHMHEFED 398
V++ +FAC KNE LAAN+LL F+D
Sbjct: 437 VIQAYFACEKNENLAANFLLS--QNFDD 462
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 212/407 (52%), Gaps = 52/407 (12%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
EE + E F+V M VS APA++ +T + +TT TP T
Sbjct: 58 EEYDIKEKDFIVCM-------------VSRAPASKVKTEQKT--EEKKQSTTESTPLNT- 101
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
++ P PAP P A A + + + G S+LV G+ A + +
Sbjct: 102 --------TSTSPKTPAPESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNM 151
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE +A A
Sbjct: 152 VEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNA 208
Query: 240 QAQQ-PAAPAPTSGPNANPLDLFPQ------GLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
A AAPA ++ P A P +LF Q G G+ +G L FLR QFQ LR +
Sbjct: 209 TAASGNAAPANSTQPAA-PGNLFEQAAAHAQGEEESGA-SGEDPLGFLRELPQFQQLRQI 266
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 348
VQ NPQ ILQ++G+ NP L ++I ++ FL+L+ E V+G G L Q +
Sbjct: 267 VQQNPQMLEGILQQIGESNPALAQIISQNPEAFLQLLAEGVDGE-----GVLPPGTIQ-I 320
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+TPEE ++IERL +GFDR +V++ + AC+KNEELAANYL +H HE
Sbjct: 321 EITPEENQSIERLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHE 367
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 230/433 (53%), Gaps = 66/433 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPPPAAPAPAPAPAPAPAPAPAPV-----------------SS 154
P V P SV P +APP A+ P A PAPV +S
Sbjct: 121 P-VEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEAS 178
Query: 155 VSD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
++D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 179 LTDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLL 235
Query: 212 SGIPEQTAVPP--VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 269
+GIP ++ PP V R + P Q PAA SG G
Sbjct: 236 TGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAESG----------------G 279
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLI 325
+ A A L+FLR+ QFQ +R ++Q NP +L Q+LG+ NP L++ I +HQ F++++
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQML 339
Query: 326 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
N A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 340 N-------EPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 392
Query: 386 ANYLLDHMHEFED 398
AN+LL F+D
Sbjct: 393 ANFLLQ--QNFDD 403
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/431 (32%), Positives = 208/431 (48%), Gaps = 115/431 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E + E F+VVM+TK K ++ ++ + + N+ ++TSSA +TQP++ P
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSA---TTQPSSN-----P 109
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
TV Q ++A + P PA GQA S L+ G + V
Sbjct: 110 TV---QETLQAASNVQEQSAVPTPAA----------------GQAESALLMGEDYNTMVN 150
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQA 232
I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q+
Sbjct: 151 NIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQS 207
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
+P L FLR QFQ +R +
Sbjct: 208 QDP-----------------------------------------LAFLRMQPQFQQMRQV 226
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL-------- 337
+Q NPQ +LQ++G NP L++LI ++Q F+R++NEPVE G VL
Sbjct: 227 IQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPATGAGARVLPTSGGGVA 286
Query: 338 ------------------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
G A + +TP++R+AIERL+A+GF LV++ +FAC
Sbjct: 287 SATAAAAAGGAVNGGAGTGAAAGVGSGTIQITPQDRDAIERLKALGFPEHLVVQAYFACE 346
Query: 380 KNEELAANYLL 390
KNE LAAN+LL
Sbjct: 347 KNENLAANFLL 357
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/213 (51%), Positives = 133/213 (62%), Gaps = 29/213 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q+
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP-------NTHDNAASNLLSGRNVDTIINQL 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 153 MEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 63/388 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +
Sbjct: 98 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEES--------VPTTS 146
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YNN
Sbjct: 147 PESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNN 203
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
P RAVEYL +GIP S + G+ ++QPA
Sbjct: 204 PHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----------------- 236
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQ 318
+ G L+FLR+ QFQ +R ++Q N P +LQ+LG++NP L++ I HQ
Sbjct: 237 -------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQ 289
Query: 319 TDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRAL 370
F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +L
Sbjct: 290 EQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESL 348
Query: 371 VLEVFFACNKNEELAANYLLDHMHEFED 398
V++ +FAC KNE LAAN+LL F+D
Sbjct: 349 VIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 135/412 (32%), Positives = 200/412 (48%), Gaps = 102/412 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK KVS S ++ S A ++ +T S A
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGD-----------------A 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P++VP P P A V++ N + + LEAT+Q I+
Sbjct: 103 KPKTVP--------------PEEVVKPTTAETERVTE-----TPNTTSDAELEATIQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 144 DMG---YDRPQVEQALRASFNNRERAVEYLITGIPEELL--------------------- 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
+Q A + P L FLR+ QFQ +R ++Q NP
Sbjct: 180 HEQEAEESSDEDP-----------------------LAFLRDQPQFQQMRAVIQQNPNLL 216
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLG----QLASAMPQ 346
+LQ++G+ NP L+++I +HQ F+R++NEPV + NV QL S
Sbjct: 217 NAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQ--N 274
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ V+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 275 VIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 324
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 211/397 (53%), Gaps = 75/397 (18%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK+K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK--- 118
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
A ++AP ++ ++ A + +P+T + VA P PP AP+ P
Sbjct: 119 --AGLATSAP---SEPSAPAAANTLEPSTPTPPAPAIVAMPL-------PPPAPSEEQKP 166
Query: 142 APAPAPAPAPVSSVSDVY--------GQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 193
A PA P + + AAS LV GS E + +I+ MG ++RE V+
Sbjct: 167 AEEPAAGTPPEAGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVV 223
Query: 194 RALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP 253
ALRA+YNNP RAVEYL +GIP S ++G P Q ++Q P PAP G
Sbjct: 224 AALRASYNNPHRAVEYLLTGIP----------GSPEPESG--PVQ-ESQAPEQPAPEGGE 270
Query: 254 NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPH 309
N L+FLR+ QFQ +R ++Q N P +LQ+LG++NP
Sbjct: 271 N---------------------PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQ 309
Query: 310 LMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERL 361
L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL
Sbjct: 310 LLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-GAIGEESPQMNYIQVTPQEKEAIERL 368
Query: 362 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 369 KALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 403
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 215/424 (50%), Gaps = 56/424 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ + SA+ + + SSA + + VA
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + E + A P P P S +D+ +A S LV GS+ + V +++
Sbjct: 121 PADKLEEK-------ESSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEMM 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQT 239
MG ++RE V+ ALRA+YNNP+RAVEYL SGIP Q + S G P +++
Sbjct: 174 LMG---YEREQVVAALRASYNNPDRAVEYLLSGIPGQD------QGSRTGPDSTPAVSES 224
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN--- 296
A A + ++P S G L FLRN QF +R ++Q N
Sbjct: 225 PAAPAGGTAAPTSTESSP------------SAGGGNPLGFLRNQPQFHVMRQLIQQNAAL 272
Query: 297 -PQILQELGKQNPHLMRLIQEHQTDFLRLINEP---------------------VEGGEG 334
P +LQE+G++NP L++ I HQ F++++NEP G G
Sbjct: 273 LPALLQEIGRENPELLQEISNHQEQFIQMLNEPNPDPVPGGGGGGGGGGGGGGGARGAGG 332
Query: 335 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394
+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 333 TGADTSGESQMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQ 390
Query: 395 EFED 398
F+D
Sbjct: 391 NFDD 394
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 209/396 (52%), Gaps = 60/396 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQA 162
P P SA + PAPA A PA PA PV SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 334 GNVLGQLASAMPQA---------VTVTPEEREAIER 360
G G + A + VTP+E+EAIER
Sbjct: 337 GQGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER 372
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 148/407 (36%), Positives = 219/407 (53%), Gaps = 39/407 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E++FVVVM++K K + + + + +T S + QP++++ P T A
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPTTTSA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + A + +S S + QA S LV G++ E TV ++
Sbjct: 120 PSGTTGTES----------TDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMV 169
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ----A 232
MG + R V+RAL+A+YNNP RA+EYL P E+ A P + AGGQ
Sbjct: 170 GMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPLT 226
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGTLDFLRNSQQFQALR 290
+PP Q+PA + S P +A P PQG L G + + L L QFQALR
Sbjct: 227 SSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQALR 284
Query: 291 TMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVL--GQLASA 343
VQ NP +LQE+G+ NP L++LI ++Q +F+ L+N+P + G G L G ++
Sbjct: 285 AAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPIGSGQELPPGTVS-- 342
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ VT EEREAI+RL+A+GF V++ + AC+KNE LAAN LL
Sbjct: 343 ----IQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLLL 385
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 202/389 (51%), Gaps = 62/389 (15%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK+K
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQ 95
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
S + +P ++++ PP PT+ P PP S + +P + A A
Sbjct: 96 STPAPPEVSPTAAPESSTPFPPA---PTSGMSHP-----PPASREDKSPSEES---ATAT 144
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
+P P S S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 145 SPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 201
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP RAVEYL +GIP S + G+ +QPA A
Sbjct: 202 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVPEQPAVEA------------- 238
Query: 262 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEH 317
AG L+FLR+ QFQ +R ++Q NP +L L G++NP L++ I H
Sbjct: 239 ----------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 288
Query: 318 QTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRA 369
Q F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +
Sbjct: 289 QEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPES 347
Query: 370 LVLEVFFACNKNEELAANYLLDHMHEFED 398
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 348 LVIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 209/430 (48%), Gaps = 70/430 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K+K T A ++ + S P S+ P T P A
Sbjct: 62 SYNIDEKGFIVCMVSKAK-------TAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAA 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+VP + P P PAP A S + S+L GS E+ + Q+
Sbjct: 115 SSSTVPAAVPE----------TPTPAPQVAATSQPTTAAFNDPSSLAMGSARESAILQMT 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG + R V A+RAA+NNP+RAVEYL +GIPE Q PP + A PP Q
Sbjct: 165 EMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRA------PPTQ 215
Query: 239 TQA-----------QQPAAPAPTSGPNANPLDLF---------PQGLPNMGSNAGA---- 274
QPAA A + P++LF +G P G A
Sbjct: 216 PTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPL 275
Query: 275 --------GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFL 322
LDFLRN+ QFQ LR ++Q +PQ ILQ++G+ NP L +LI + FL
Sbjct: 276 AALAGGGGANLDFLRNNPQFQQLRQVIQEHPQMLEPILQQVGQANPQLAQLISTNPEGFL 335
Query: 323 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 382
RL+ E ++ E A+ VT EER+AIERL +GF+R +V++ +FAC+KNE
Sbjct: 336 RLLGEGIDEEELAGAAPGGGL---AIHVTEEERDAIERLCQLGFERDVVIQAYFACDKNE 392
Query: 383 ELAANYLLDH 392
E+AAN+L ++
Sbjct: 393 EMAANFLFEN 402
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 119/155 (76%), Gaps = 5/155 (3%)
Query: 248 APTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL----QE 302
AP+SG PN+ PL+LFPQ AG G+LDFL N+QQFQALR+MVQANPQIL QE
Sbjct: 18 APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQILRPMLQE 77
Query: 303 LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLE 362
LGKQNP L+R IQEH +FL+LINEPV+G +G++ +P V+VTPEE+E IERLE
Sbjct: 78 LGKQNPQLLRSIQEHDQEFLQLINEPVDGSDGDMFDLADQEIPHTVSVTPEEQEVIERLE 137
Query: 363 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
AMGFDRALV+E F AC++NEELAANYLL+ ++E
Sbjct: 138 AMGFDRALVIEAFLACDRNEELAANYLLEQAGDYE 172
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/422 (34%), Positives = 217/422 (51%), Gaps = 62/422 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTT------SSAPPTSTQPTTTSQ 113
++ E +F V + + AP +QA+T+ S A PT+T ++TS
Sbjct: 65 RIDEKNF-------VVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSF 117
Query: 114 TPAPTVA---PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
AP PP + E P AP +P P+ S + AAS LV GS
Sbjct: 118 PSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGRE--EDAASTLVTGS 175
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P GG
Sbjct: 176 EYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP-------GG 225
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQA 288
+ P + + + P +PA G+ G G L+FLR+ QFQ
Sbjct: 226 ERWGGPGRAERRPPVSPARAEYAG--------------GAAVGTGENPLEFLRDQPQFQN 271
Query: 289 LRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLG 338
+R ++Q NP +L L G++NP L++ I HQ F++++NEP + EG V G
Sbjct: 272 MRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-G 330
Query: 339 QLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F
Sbjct: 331 AIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNF 388
Query: 397 ED 398
+D
Sbjct: 389 DD 390
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 198/405 (48%), Gaps = 78/405 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE-----------GGEGNVLGQLASAMP 345
+LQ++G+ NP L++LI ++Q F+R++NEP GG G +G +
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPANVTPPTAPGGISGGLGAGIGAGSDVEA 297
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 298 SVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 342
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 204/407 (50%), Gaps = 63/407 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E SFVV+M+ K K + + A + Q +++P STQ ++T+Q
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPA-AVAPAPVTTTIPQAATASP--STQASSTAQE------ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVY-GQAASNLVAGSNLEATVQQI 179
S PE+ P A A A A P +S Y +A S L G+ E V +I
Sbjct: 112 --DSKPEAKPDEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEI 169
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +P GGQ
Sbjct: 170 MNMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---LPSERVGDQGGQDEGEEETA 223
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN--- 296
+L+FLR QF +R MVQ N
Sbjct: 224 AEG-------------------------------VSSLEFLRTQPQFITMRRMVQQNPGV 252
Query: 297 -PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLGQLASAMP---- 345
PQ+LQ +G+ NP L++LI HQ +F+R++NEP + GGEG P
Sbjct: 253 LPQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDGPQPAAGGEGGQQSVPGEGAPPPGV 312
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ +TP E+EAIERL+ +GF LV++ +FAC KNE LAAN+LL+
Sbjct: 313 SYIQITPVEKEAIERLKQLGFPEPLVIQAYFACEKNENLAANFLLNQ 359
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 199/421 (47%), Gaps = 94/421 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-----------GEGNV--------- 336
+LQ++G+ NP L++LI ++Q F+R++NEPVE NV
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPPTAPGGI 297
Query: 337 -------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+G + + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 298 SGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFL 357
Query: 390 L 390
L
Sbjct: 358 L 358
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 213/418 (50%), Gaps = 56/418 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG + +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K+K + + +S +++ + ++ + P T P A T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S PP A PA ++ + S LV GS LE+ V+ ++
Sbjct: 121 SNIASPASEPP------------ASTPAAPTETTTTATPADTFSQLVTGSQLESVVENMM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R RALRA++NNP+RAVEYL++GIPE + +A Q Q +
Sbjct: 169 SMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----LNEMNAAQQ------QPE 215
Query: 241 AQQPAAPAPTSGPNAN----PLDLFPQGLPNMGSNAGAG----------TLDFLRNSQQF 286
QQ + PNAN ++LF + +L RN+ F
Sbjct: 216 VQQDTNTQSPTTPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPHF 275
Query: 287 QALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 342
Q +R +VQ NP +LQ +G+ NP L+R I FL+ E EG EG +G
Sbjct: 276 QQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEGAEGEEG-AMG---- 330
Query: 343 AMPQAVT--VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EFE 397
P+ T VTPEER+AI+RL A+GFD+A+ E +FAC+KNEELAANYL +H + +FE
Sbjct: 331 --PETTTIQVTPEERDAIDRLAALGFDKAVAAEAYFACDKNEELAANYLFEHGYDDFE 386
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 197/416 (47%), Gaps = 91/416 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P A + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASNPTNTAQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--------- 347
+LQ++G+ NP L++LI ++Q F+R++NEP GG + P A
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEP--GGRTTPVSAANVTPPTAPGGISGGLG 295
Query: 348 -------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 296 AGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 351
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 211/413 (51%), Gaps = 62/413 (15%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+++ K S+S + ++ N + P + P+ TV
Sbjct: 58 GEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASV---------PEKKVEAPSSTV 108
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A S ++ A AP+ A + AP+ A+ L G+ V+ +
Sbjct: 109 AESTSTTQTVA-----AAAPSNPDTTATSEAPID---------ANTLAVGAQRNVAVENM 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RA+RAA+NNP+RAVEYL +GIPE + +
Sbjct: 155 VEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL-------NRQREESAAALAA 204
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRTM 292
Q QQ A APTS P +LF Q + N G L FLR+ QFQ LR +
Sbjct: 205 QQQQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQI 262
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 347
VQ NPQ ILQ++G+ +P L + I ++ FL+L+ EG EG SA+P
Sbjct: 263 VQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLL---AEGAEGE------SALPSGG 313
Query: 348 --VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ +T EE E+I+RL +GFDR +V++ + AC+KNEELAANYL +H HE ED
Sbjct: 314 IQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/418 (35%), Positives = 216/418 (51%), Gaps = 55/418 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVM+ K+ V+++ A A +T ++ T + T + + T A
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEA----GKTITNESTTEKKKEDTPASKSTTTA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + PA A A A A S ++ QA +NLV G N VQ I+
Sbjct: 116 SSTSSPSKSSSEQSQQPAAAQETASGGAAASQSQIA----QAEANLVMGENYNTMVQNIM 171
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA----VPPVARASAGGQAGNPP 236
+MG +DR++V+RAL A++NNPERAVEYL +GIPE P +GG GN
Sbjct: 172 EMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQDRPAPVGGNEQSGGGGGNIG 228
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
A A + SG N D P L FLR QFQ +R ++Q N
Sbjct: 229 AALDRSSNLASSGESGGN----DESP--------------LAFLRRQAQFQQMRNVIQQN 270
Query: 297 PQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-----------GNVLGQL- 340
P+ +LQ++G+ NP L++LI E+Q F+ ++NE +G + GN G L
Sbjct: 271 PEMLNAVLQQIGQANPALLQLISENQEAFVNMLNESEDGRQAPSGGNDDDDRGNFGGLLD 330
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
++P+ T ++REAIERL+A+GF LV++ + AC KNE LAAN+LL F+D
Sbjct: 331 VGSVPE---FTQQDREAIERLKALGFPDELVVQAYIACEKNENLAANFLLSQT--FDD 383
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 195/421 (46%), Gaps = 94/421 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA S L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL---------------- 340
+LQ++G+ NP L++LI ++Q F+R++NEPVE G
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPATAPGGI 297
Query: 341 -----------ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 298 SGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFL 357
Query: 390 L 390
L
Sbjct: 358 L 358
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/421 (32%), Positives = 195/421 (46%), Gaps = 94/421 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +T + + SS QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P + A A V GQA L+ G + V I+
Sbjct: 112 ------QGASSPGNIIQEQSEASTTAGC---------VGGQAEXALLMGEDYNTMVNNIV 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q +
Sbjct: 157 DMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQLE 201
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 202 AQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQLL 237
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL---------------- 340
+LQ++G+ NP L++LI ++Q F+R++NEPVE G
Sbjct: 238 NAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPATAPGGI 297
Query: 341 -----------ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 298 SGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFL 357
Query: 390 L 390
L
Sbjct: 358 L 358
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 196/399 (49%), Gaps = 84/399 (21%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS-- 112
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP---TVAPPQSVPESAPPPAAPAPAP 139
P+S P TS T AP T PP + PP AP
Sbjct: 113 --------------------PSSAVPPETSPTAAPESSTTFPPAPASGMSHPPPAPREDK 152
Query: 140 APAPAPAPAPAPVSSVSDVYG--------QAASNLVAGSNLEATVQQILDMGGGSWDRET 191
+P+ PA +P S V AAS LV GS E + +I+ MG ++RE
Sbjct: 153 SPSEESIPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERER 209
Query: 192 VIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTS 251
V+ ALRA+YNNP RAVEYL +GIP S + G+ ++QP A
Sbjct: 210 VVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPTTEA--- 256
Query: 252 GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQN 307
AG L+FLR+ QFQ +R ++Q NP +L L G++
Sbjct: 257 --------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQET 296
Query: 308 PHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 359
L + I HQ F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 297 LSLPQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 355
Query: 360 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
RL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 356 RLKALGFPEGLVIQAYFACEKNENLAANFLLS--QNFDD 392
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 136/409 (33%), Positives = 201/409 (49%), Gaps = 97/409 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S NQ +++SAP +T S V
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSD-----------NQQASSTSAPEAGESASTESGDGKSKVV 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P P PA P A P PV+S + E+TVQ I+
Sbjct: 109 EEK-----------PKPQPAAEPERASEP-PVTS-------------NEPDFESTVQSIM 143
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++R+ V +ALRA++NN ERAVEYL +GIPE+ A SA
Sbjct: 144 DMG---YNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESA------------ 188
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
+ +P L FLR+ QFQ +R ++Q NP
Sbjct: 189 -------------DEDP-------------------LGFLRDQPQFQQMRAVIQQNPNLL 216
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA---SAMPQ----AVT 349
+LQ++G+ NP L++ I +HQ F+R++NEPV + + A + +PQ +
Sbjct: 217 NTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVIQ 276
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
V+P+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 277 VSPQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 323
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 209/412 (50%), Gaps = 64/412 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K++E F+VVM++K K ++ A V+ AP A + P + T S P
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVP----- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV P A VY A SNL +
Sbjct: 113 PADSVDTPVNPETLTTTTALATGA-------------VYENAVSNL-------------M 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQT 239
+MG + R+ V A+R A+NNP+RA EYL +GIP+ VAR A + T
Sbjct: 147 EMG---FPRDQVTHAMRTAFNNPDRAAEYLMTGIPD-----SVAREFASTAPVLSDTTTT 198
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGL-----PNMGSNA----GAG---TLDFLRNSQQFQ 287
+ A P + ++LF G+ A GAG TL FLRNS QFQ
Sbjct: 199 PSSTAAPATPAAPAATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQFQ 258
Query: 288 ALRTMVQANPQILQE----LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----GQ 339
LR +V + PQ+LQ +G+ NP L++LI ++Q FL+++NE E G GN+
Sbjct: 259 QLRQLVHSQPQLLQPLLQQIGQTNPELLQLISQNQGQFLQMLNEGSEEG-GNIASAEGAD 317
Query: 340 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+AM Q +TVT EE EAI RL A+GFDR L LE +FAC+KNEELAANYL D
Sbjct: 318 DTAAMGQQITVTTEENEAILRLAALGFDRGLALEAYFACDKNEELAANYLFD 369
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 113/143 (79%), Gaps = 5/143 (3%)
Query: 260 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQ 315
+FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+NPQILQ ELGKQNP L+RLI
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLID 59
Query: 316 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 375
EH ++FL+LINEP++G EG+ Q MP AV VTP E+EAI RLEAMGFDRA V+E F
Sbjct: 60 EHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAF 119
Query: 376 FACNKNEELAANYLLDHMHEFED 398
AC+++E+LAANYLL++ +FED
Sbjct: 120 LACDRDEQLAANYLLENAGDFED 142
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 199/423 (47%), Gaps = 97/423 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + +G +T + TS+ VA
Sbjct: 58 EYNIDEKKFIVVMVTKLK-TGNGHTTTEEEHTTNTDNKEESSTTSS------------VA 104
Query: 121 PPQSVP--ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P S P + A P + A A V GQA S L+ G + V
Sbjct: 105 QPSSNPTVQGASNPTNTVQEQSEASTTAGC---------VGGQAESALLMGEDYNTMVNN 155
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 IVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQ 200
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+AQ+ + G L FLR QFQ +R ++Q NPQ
Sbjct: 201 LEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQ 236
Query: 299 ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-----------GEGNV------- 336
+LQ++G+ NP L++LI ++Q F+R++NEPVE NV
Sbjct: 237 LLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPPTAPG 296
Query: 337 ---------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+G + + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 297 GISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAAN 356
Query: 388 YLL 390
+LL
Sbjct: 357 FLL 359
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 214/415 (51%), Gaps = 56/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+V M++K K SSS SAAP S P+T S+ A T A
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSS-----SAAP-------------SQGPSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA AP P+PA A S+ +D S L+ G E V Q+
Sbjct: 100 APPAPAPATSAPAQAAPPATPSPAATGASQSGSAFND-----PSALMTGRENENAVAQME 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A
Sbjct: 155 SMG---FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPT 211
Query: 241 AQQPAAPAP-TSGPNANPLDLFPQ----GLPNMGSNAGAG-----TLDFLRNSQQFQALR 290
Q P+ + T+ P++LF G + G +G LDFLR++ FQ LR
Sbjct: 212 PQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLR 271
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP- 345
+VQ NPQ ILQ+L NP + LI +++ FL+L++E E G A+P
Sbjct: 272 QLVQQNPQMLEPILQQLASGNPQIAALIGQNEEQFLQLLSEEDEEG----------ALPP 321
Query: 346 --QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VT EER+AIERL +GF R V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 322 GTHQIHVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANYLFENPDDPED 376
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 201/400 (50%), Gaps = 50/400 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E V+ SK ++ VS++P A T ++ P S + TS PAP
Sbjct: 61 EYNIEEKDSVL-----SKPATD--FLVSSSPGTPASTPAAVTPASRR---TSSEPAP--- 107
Query: 121 PPQSVPESAPPPAAPAPAP-APAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
E PP A AP A P A +S S++ A L G + + V +I
Sbjct: 108 ------EQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEI 161
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G PP+
Sbjct: 162 MSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAPPSPA 218
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
A + A S P PL+ + L+ Q Q +R P +
Sbjct: 219 SA---TSTAMASSPEGTPLEF---------------LQNQLQFQQLRQTIRQNPSLLPML 260
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTV 350
LQ+LG + PHL++LI ++Q F+++++EPV G Q V V
Sbjct: 261 LQQLGLRGPHLLQLISQYQEHFIQMLHEPVPEAGGQSGVGGAGDAGTAQAGHGQANYVRV 320
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
TP+EREAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 321 TPQEREAIERLKALGFPEGLVIQAYFACEKNETLAANFLL 360
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 210/420 (50%), Gaps = 52/420 (12%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP AS + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------ASPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLF---------------PQGLPNMGSNAGAGTL-DFLRNSQQF 286
QPA A A L + P P + ++ A FL QF
Sbjct: 221 QPATEAGGCARAACALQMHSPCAFAFAVCFTWRKPSASPILQASPPALVCSSFLARHSQF 280
Query: 287 QALRTMVQANPQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQL 340
+ + + Q + +P L + I HQ F++++NEP + EG V G +
Sbjct: 281 KGCDDLGRGGDQGCELPCLPHP-LPQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAI 338
Query: 341 ASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 339 GEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 396
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/393 (34%), Positives = 201/393 (51%), Gaps = 60/393 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTV 350
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + V
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQV 316
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
TP+E+EAIERL+A+GF +LV++ +FAC K ++
Sbjct: 317 TPQEKEAIERLKALGFPESLVIQAYFACEKKKK 349
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 125/210 (59%), Gaps = 21/210 (10%)
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
V+ ++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NNPE V+YLY
Sbjct: 62 VNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLY 121
Query: 212 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGS 270
SGIPE + S G P QT A G N++PL++FP+ + G
Sbjct: 122 SGIPEVVEI----FMSIGPY---PINQTTKIGGATARAVFGVHNSSPLNMFPKEII-CGV 173
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
AG G LDF RN+ Q +L ELGKQN L+RLI EH +FL L NEPVE
Sbjct: 174 GAGIGLLDFHRNNLQ------------PVLXELGKQNLSLLRLISEHHVEFLXLTNEPVE 221
Query: 331 GGEGNVLGQLASAMPQAVTVTPEEREAIER 360
G EG++ Q MP ++ VTP E+ AI+R
Sbjct: 222 GSEGDIFDQPEQDMPHSINVTPAEQHAIKR 251
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 212/435 (48%), Gaps = 64/435 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA--PT 118
+ +V E F V+ML K K A TV A T+++A P+ST + TPA P
Sbjct: 58 DIEVKEKDFFVIMLMKPKT----APTVPAP-----STSAAAVPSSTSAPVQTSTPAAPPA 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P + PES P A + PA AP G + GS L+ T+ +
Sbjct: 109 TSTPSANPESTPATTTEPQAAVDSSTPAVAP----------GTQDPGFLTGSGLQTTIDE 158
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-QTAVPPVARASAGGQAGNPPA 237
I++ G + RE V++A+RAA+NNP+RAVEYL +GIP A+PP A AG
Sbjct: 159 IVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATAT 216
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG---------------------AGT 276
A PAP + P +LF ++ +
Sbjct: 217 APTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSRV 275
Query: 277 LDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVE-- 330
L+ LRN+ Q LR +VQ NPQ+LQ +LG+ NP L+ + + + ++E +
Sbjct: 276 LESLRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFLSEGADQA 335
Query: 331 GGEG-------NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
G G LG Q V VTPEE+EAI+RL MGF+R L ++ +FAC+KNEE
Sbjct: 336 GDFGMDEGGFPPGLGGGDGTGAQYVQVTPEEQEAIDRLVGMGFERQLAIQAYFACDKNEE 395
Query: 384 LAANYLLDHMHEFED 398
+AANYL++ H FED
Sbjct: 396 MAANYLVE--HGFED 408
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 191/399 (47%), Gaps = 77/399 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ FVV+M++K PA AQ A T + A V
Sbjct: 62 TYDLKSVKFVVIMVSK--------------PATGAQ--PGAASTEQPAAPAAAAEAKPVE 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ P+ A P A P+ + A S LV G + V+ I
Sbjct: 106 SPEEKPKEAGTPTATRPSTTTPSTDSSAGN------------ESTLVVGEQYKQMVESIT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + ++ V RALRA+YNNP+RAVEYL +G P A NP A Q
Sbjct: 154 EMG---YPQDQVERALRASYNNPDRAVEYLVTGFP--------PEEEEARAAENPRAPRQ 202
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP--- 297
P G+ G L FLRN QFQ +R ++ NP
Sbjct: 203 -------------------------PGAGTQ---GDLSFLRNQPQFQQMRNAIRDNPALL 234
Query: 298 -QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVT---VT 351
I+Q+LG NP L+RLI ++Q DF+RL+NE + EG + LG+ A A V VT
Sbjct: 235 DTIIQQLGSNNPDLLRLITQNQDDFMRLLNEEDDAAEGALPELGEGAPAGGPLVIEAHVT 294
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
P++REAIERL+A+GF LV+E +FAC+KNE+LA N+LL
Sbjct: 295 PQDREAIERLKALGFPEHLVVEAYFACDKNEDLAVNFLL 333
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 199/415 (47%), Gaps = 98/415 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA-QTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M++K SG + V+ + N A Q +++ + P
Sbjct: 60 EYNIDEDKFIVIMVSK---PDSGTTEVANSGDNSATQPSATPAAAPAPAAPAAPAPVAPA 116
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ S ESA L+ G E VQ I
Sbjct: 117 SNLSSEAESA------------------------------------LLMGEEYENMVQNI 140
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V +ALRA+YNNP+RAVEYL +GIP A G+
Sbjct: 141 VDMG---YPRDQVEQALRASYNNPDRAVEYLINGIP------------AMGE-------- 177
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
Q AAP+ + G+ S+A + L FLR+ QFQ ++ +VQ NPQ
Sbjct: 178 --DQEAAPSMS-------------GIDERQSDA-SDPLAFLRSQPQFQQMKQVVQQNPQL 221
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----GEGNV--------LGQLASA 343
+LQ+LG+ NP L+ LI ++Q F+RL+NEP G GN G
Sbjct: 222 LNAVLQQLGQTNPALLNLISQNQESFVRLLNEPSAGAAPAATGNAPPAPVVAQGGGGTPP 281
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ TP++++AIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 282 QGTTIQFTPQDKDAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 334
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 147/244 (60%), Gaps = 24/244 (9%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAG-AGTLDF 279
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 280 LRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LR + QFQA+R MVQ NPQILQ EL +QNP L LI +Q +FL L+NEP+ +
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYHLINANQEEFLALLNEPLPENIQD 174
Query: 336 VLGQLASAMPQA--------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
++ +P+ + +T EERE ++RL +GF + +E F AC+KNE+LAAN
Sbjct: 175 LMSDFGEGVPELEGQGEGMQIELTQEERETVDRLAGLGFPVEICIEAFLACDKNEQLAAN 234
Query: 388 YLLD 391
YLL+
Sbjct: 235 YLLN 238
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 193/421 (45%), Gaps = 98/421 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K T + P TS + T + +
Sbjct: 58 EYNIDEKKFIVVMVTKPK-------------------TGATPKTSEEQRTEGDKKEESTS 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P S P A + A AP + ++ S L+ G + V I+
Sbjct: 99 SATTQPSSNPNVQDTTRAASNVQEQPVAAAPAAGQAE------SALLMGEDYNTMVNNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 153 DMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDP---------PEDPPEAQE 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
Q + P L FLR QFQ +R ++Q NPQ
Sbjct: 201 QLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLL 233
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL---------------- 337
+LQ++G NP L++LI ++Q F+R++NEP E G VL
Sbjct: 234 NNLLQQIGSTNPALLQLISQNQETFVRMLNEPAEPTTGTGARVLPSGGGVGPAAAATAGG 293
Query: 338 --------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
G + +TP++REAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 294 AVNGGPGAGAATGVGSGLIQITPQDREAIERLKALGFPEHLVVQAYFACEKNENLAANFL 353
Query: 390 L 390
L
Sbjct: 354 L 354
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 203/404 (50%), Gaps = 77/404 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K + S + ++ ++ P ++ T+ QT +
Sbjct: 59 DVGIKEGERLVVLLSKGASQKAAESQQNKQNNTSNESNTNTDPAASATTSNIQTQSGNSD 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P AS L+ G+ LE T+ I+
Sbjct: 119 PS------------------------------------IDSRASALLTGTELEETITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------- 176
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGL---PNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+ P AP PT+ N GL + S G L+ LR + FQ LR++VQ +P
Sbjct: 177 -ENPVAPNPTNITPVNSNASLNAGLTPSEELSSEQLPGNLESLRTNPLFQQLRSVVQQDP 235
Query: 298 QILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTP 352
+IL EL G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP
Sbjct: 236 RILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTP 291
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
+E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 292 QEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 197/400 (49%), Gaps = 66/400 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+++K GA ++ +Q + ++ T P TT+
Sbjct: 59 DIGIKEGERLVVLVSK------GAIQQKSSEISQTKNIGNSTSAQTTPVTTN-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + Y +AS L+ G+ LE T+ I+
Sbjct: 105 --------------------------TGVIPNNCDQNTYESSASALITGTELETTINNIV 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R VI A+RAA+NNP+RAVEYL SGIP P GQ +
Sbjct: 139 NMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP-----LPGIIIQGQGQGQGQSEVSL 190
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P + N + N + G LD LR + FQ LR +VQ +P+IL
Sbjct: 191 SQAATTPINPEMSDINQIS------TNASGDTVTGALDSLRTNPIFQQLRMVVQQDPRIL 244
Query: 301 QEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
EL G+ NP +++LI E+Q +F+RL+ E + + +G++ A +V +T +E E
Sbjct: 245 PELLARVGQTNPEILQLITENQEEFIRLM----ERTDSDDIGEINGAT--SVYLTQQEAE 298
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
A+ERL+ +GF R LE F C KNEELAANYL+++ +F
Sbjct: 299 AVERLQGLGFPRNAALEAFLICEKNEELAANYLIENSADF 338
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 202/441 (45%), Gaps = 93/441 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SS+ S + A Q + + P ++ T+ S T +
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A + +VS + +A SNL+ G TVQ ++
Sbjct: 120 QPIIIS-----------ATNETKQRNDLVGELENVS-LQSRAESNLLMGDEYTQTVQSLI 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPPAQT 239
+MG + RE V RA+ A++NNPERAVEYL +G+P E + V S NP
Sbjct: 168 EMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST-----NPSLVQ 219
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
Q + T + D F +FLR+ QF +R+++ NP
Sbjct: 220 SGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQFLQMRSLIYQNPHL 263
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT------ 349
+LQ++G+ NP L++LI E+Q FL ++N+P+E G A A+P+ T
Sbjct: 264 LHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIENDSG-----AADAVPRTSTNRRRRV 318
Query: 350 ----------------------------------------VTPEEREAIERLEAMGFDRA 369
+ +E+EAIERL+A+GF A
Sbjct: 319 FSSELEGAVAAHRLGTNELRENQTGGNDEPFEHPGVATIRLNSQEQEAIERLKALGFPEA 378
Query: 370 LVLEVFFACNKNEELAANYLL 390
LVL+ +FAC KNEELAAN+LL
Sbjct: 379 LVLQAYFACEKNEELAANFLL 399
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 171 bits (432), Expect = 8e-40, Method: Composition-based stats.
Identities = 135/405 (33%), Positives = 201/405 (49%), Gaps = 72/405 (17%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+ K K Q P+ ++
Sbjct: 1097 ESYDIKEKDFIVCMVQKPK----------------------------------QVPSASI 1122
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+V + P A AP + P + VSS S+ + S LV G + ++ +
Sbjct: 1123 VAESTVSTNQSDPKASAPETSLPSVPGTS---VSSSSETFNDPNS-LVVGLLCDTAIKNM 1178
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V A+RAA+NNP+RAVEYL +GIPE + + ++S+ Q
Sbjct: 1179 MEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQIV 1235
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGSNAGAGTLDFLRNSQQF 286
Q+ + P T + N +L Q G MGSN A +L FLRN+ QF
Sbjct: 1236 QSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGSN-NAESLAFLRNNPQF 1294
Query: 287 QALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 342
LR +VQ PQ +LQ+LG+ N L LI ++ FL+L++E +E G+G +
Sbjct: 1295 LMLRRLVQTQPQMLESVLQQLGQGNLQLATLINQNSDAFLQLLSEGME-GDG------TA 1347
Query: 343 AMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
AMP V +T EER+AIERLEA+GF +V++ +FAC+KNEE++
Sbjct: 1348 AMPNIVQLQLTEEERQAIERLEALGFSHGVVVQAYFACDKNEEVS 1392
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/454 (31%), Positives = 216/454 (47%), Gaps = 90/454 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P Q+ LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVMLT+ SS +ST ++ A+ S T+ +PT T+ +PA A
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAEKPSEK-KTNPEPTPTAPSPAAVSA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P VP S A + +P +P + +D +A S+L+ G TV ++
Sbjct: 119 P---VPASVASSGASG-TTSDSPNTETTVSPTAPSTD-QTRAESSLLMGEEYNRTVSSMV 173
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V RA+ A++NNPERAVEYL +GIP + + Q
Sbjct: 174 EMG---YPREQVERAMAASFNNPERAVEYLINGIPAE--------------------EDQ 210
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
P S PN D P+ S A +FLR+ QF +R+++ NPQ
Sbjct: 211 LFNDTDPTSQSNPNPRVADASSINAPSGRSTADP--FEFLRSQPQFLQMRSLIYQNPQLL 268
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---------GEGNVLGQLASAMPQA 347
+LQ++G+ NP L++LI E+Q FL ++N+P+EG EG G L A ++
Sbjct: 269 DAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEGESSARGTARSEGLASGLLEVAAQRS 328
Query: 348 -------------------------------------------VTVTPEEREAIERLEAM 364
+ + P++++AIERL+A+
Sbjct: 329 AAGAQETTSAARASVPGSPSATEGGASERETAEQQQLAEGVATIRLNPQDQDAIERLKAL 388
Query: 365 GFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 389 GFPEALVLQAYFACEKDEELAANFLLS--SSFDD 420
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 180/357 (50%), Gaps = 63/357 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSV 155
T S PA T A + P A P PA PA +PAPA + SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P +A + G +P A A +
Sbjct: 231 GDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTT 270
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRL 324
+G L+FLRN QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F R
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 208/403 (51%), Gaps = 75/403 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 80 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 119 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 164 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 205
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 206 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 257
Query: 299 ILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPE 353
IL EL G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP+
Sbjct: 258 ILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTPQ 313
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 314 EAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 356
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 161/312 (51%), Gaps = 51/312 (16%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 336 V---------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 267 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 326
Query: 381 NEELAANYLLDH 392
NE LAAN+LL
Sbjct: 327 NENLAANFLLQQ 338
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 132/207 (63%), Gaps = 21/207 (10%)
Query: 151 PVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210
P+++V V AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YL
Sbjct: 97 PLNTVDHV----ASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYL 152
Query: 211 YSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
YSGIP + AVP V + + T A P + PN PL LFPQ N
Sbjct: 153 YSGIPVTAEVAVPVVPQGA---------NSTDATPPGVTGLSGIPNTAPLSLFPQWASNA 203
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRL 324
G AG G+LDFLRN+QQFQALR MV NPQI LQELG+ +P L+RLIQE+ +F L
Sbjct: 204 GGAAGGGSLDFLRNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGL 263
Query: 325 INEPVEGGEGNVLGQ--LASAMPQAVT 349
NE + G+G Q L++ +P A+
Sbjct: 264 PNENFDAGDGLEFYQSVLSAPLPLALV 290
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 192/403 (47%), Gaps = 92/403 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVV+M+ + K V A PA S+ P++ Q +Q T
Sbjct: 61 EVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIPAAAQV---TTV 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P SV +++P AAP + P E T Q I+
Sbjct: 106 TPASVTDNSP--AAPQNSDGLTPEQ---------------------------EETAQAIV 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 137 AMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------QES 179
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP--- 297
A+ G LDFLR QF+ LR +VQ+NP
Sbjct: 180 AEHEE-----------------------GERGQGLGLDFLRQLPQFEQLRELVQSNPALL 216
Query: 298 -QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQ---AVTVTP 352
QI+Q++ + NP LM IQ +Q +F+ L+N G G G+++ SA Q A+ VT
Sbjct: 217 PQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIHVTE 276
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 277 AERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 319
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 208/403 (51%), Gaps = 75/403 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 59 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I+
Sbjct: 98 -------NTDPAASATTSNIQAQSGNSDPSIDSR--------ASALLTGTELEKTITNIV 142
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPAQ 238
+MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 143 NMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PNH 184
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P+
Sbjct: 185 TNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDPR 236
Query: 299 ILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPE 353
IL EL G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP+
Sbjct: 237 ILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTPQ 292
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 293 EAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 162/313 (51%), Gaps = 52/313 (16%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P +A + G +P A A + +G L+F
Sbjct: 167 VDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTTSGGHPLEF 206
Query: 280 LRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 336 V----------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 267 GGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 326
Query: 380 KNEELAANYLLDH 392
KNE LAAN+LL
Sbjct: 327 KNENLAANFLLQQ 339
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 197/422 (46%), Gaps = 103/422 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVS--AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM+TK K ++ ++ A + ++TSSA +TQP++ T
Sbjct: 75 NIDEKKFIVVMVTKPKAGATPKTSEEQRAEGDKKEESTSSA---TTQPSSNLNIQDTT-- 129
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A + ++ + GQA S L+ G + V I+
Sbjct: 130 ----------------------RAASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNIM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP +
Sbjct: 168 DMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQE 215
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
Q + P L FLR QFQ +R ++Q NPQ
Sbjct: 216 QLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQLL 248
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--------- 347
+LQ++G NP L++LI ++Q F+R++NEPVE G L ++
Sbjct: 249 NNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAAGTGARVLPASGGGVAPATAAAVG 308
Query: 348 -------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+ +TP++R+AIERL+A+GF LV++ +FAC KNE LAAN+
Sbjct: 309 GAVNGGAGTGAAAGVGSGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANF 368
Query: 389 LL 390
LL
Sbjct: 369 LL 370
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 161/312 (51%), Gaps = 51/312 (16%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA-----PAPAPAPAPAPVSSVSDVYGQAA 163
T S TPA T A + P A P PA PA +PAPA + SS S+++ A
Sbjct: 40 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 99
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 100 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 156
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
V P PP P +PA + + +G L+F
Sbjct: 157 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 196
Query: 280 LRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 197 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 256
Query: 336 V---------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 257 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 316
Query: 381 NEELAANYLLDH 392
NE LAAN+LL
Sbjct: 317 NENLAANFLLQQ 328
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 215/471 (45%), Gaps = 110/471 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKS-------KVSSSGASTVSAAPA-NQAQTTS-----------SA 101
KV E F+VVMLT+ +++ VS+ A QA+ T+ S
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG- 160
P + +++S+ A T E A +PAPA + + V ++
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELANT 179
Query: 161 ----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
+A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQ 236
Query: 217 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 276
+ + +A N + PA A A+P
Sbjct: 237 EENLFTPGDDEESSRASNIHQGAASDLPAESA------ADP------------------- 271
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE-- 330
+FLR+ QF +R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 272 FEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEDE 331
Query: 331 -GGEGNVLGQ----------LASAMPQAVT------------------------------ 349
LG+ L S+ QA T
Sbjct: 332 VATNAQRLGRTQSNSSRTENLTSSASQAATTEGQRSAAGSENQPISVALEGDGTVSAERN 391
Query: 350 ----------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+TP++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 392 VPTESLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 442
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 210/425 (49%), Gaps = 87/425 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT--TSQTPAPT 118
+ E F+V M+TK K + + +S A + ++ P + + TS T P
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVP- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A P+PA A PAP P+ + L G+ A + +
Sbjct: 117 --------------ATPSPAGASIPAPQATPS----------NETTGLAMGAERSAQIAE 152
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+ MG ++R + A+RAA+ N ERA+EYL +GIPE+ P A A QA +PP
Sbjct: 153 MESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPP 209
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------------------- 275
A +G +P+DLF Q N G+ GA
Sbjct: 210 A-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGL 255
Query: 276 -TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
LDFLRN+ QFQ LR +VQ PQ ILQ++G NP L LI +H FL+L++E +
Sbjct: 256 GNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENAD 315
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P QA+ VTPEER+AIERL +GF+R ++ +FAC+KNEELAAN
Sbjct: 316 DD---------APLPPGAQAIEVTPEERDAIERLCRLGFNREQAIQAYFACDKNEELAAN 366
Query: 388 YLLDH 392
+L +
Sbjct: 367 FLFEQ 371
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 146/244 (59%), Gaps = 34/244 (13%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 281
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 282 NSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPV-------- 329
++ QFQA+R MVQ P ILQ EL +QNP L LI +Q +FL L+NEP+
Sbjct: 231 DNPQFQAIRAMVQGQPHILQPMLAELQRQNPQLYHLINNNQEEFLALLNEPLPENIRDLM 290
Query: 330 -EGGEGNVLGQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
EG V +L A + ++ EERE I+RL +GF + +E + AC+KNE+LAAN
Sbjct: 291 AEGFGDGVAPELQGDDDGAQIELSQEERETIDRLAGLGFPLEICVEAYLACDKNEQLAAN 350
Query: 388 YLLD 391
YLL+
Sbjct: 351 YLLN 354
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 205/405 (50%), Gaps = 36/405 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 298 ----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
Q+LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E EA++RLE++GF R +E + AC++NEE+AANYL +++++ D
Sbjct: 332 EMEALQRLESLGFSRHQAVEAYLACDRNEEMAANYLFENLNDLGD 376
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 182/356 (51%), Gaps = 60/356 (16%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPAP---APAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 336
R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 217 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 276
Query: 337 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 277 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 332
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 202/447 (45%), Gaps = 96/447 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QTPAP 117
V + F+VVMLT+ SS+ NQ S ST + S +
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSN---------PNQLSVKESDKLISTDDSKDSMPGEEANH 110
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ +P E + P+ P A A + S +A SNL+ G TV
Sbjct: 111 SNSPCTKNTEESVLPSETTPLSTDNLIGDLAQASLQS------RAESNLLMGEEYNQTVL 164
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIPE+ + ++ NP
Sbjct: 165 SMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEGTID----NGVNESTNPSV 217
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q + + P + D F +FLR QF +R+++ NP
Sbjct: 218 IASGPQTVSASSVERPAESNSDPF----------------EFLRRQPQFLQMRSLIYQNP 261
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE------------------GGEGN 335
+LQ++G+ NP L++LI E+Q FL ++N+P+E +GN
Sbjct: 262 HLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESSTTVPGVSSAGTHSTQGN 321
Query: 336 VLGQLASAMPQA--------------------------------VTVTPEEREAIERLEA 363
V +S + A + + ++++AIERL+A
Sbjct: 322 VSNLFSSDLGAASAQRSTAGTSAAQQSGSSAEHEDLEQPLGASTIRLNRQDQDAIERLKA 381
Query: 364 MGFDRALVLEVFFACNKNEELAANYLL 390
+GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 382 LGFPEALVLQAYFACEKNEELAANFLL 408
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 222/470 (47%), Gaps = 112/470 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------- 331
+R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 263 LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESASGNNTQRS 322
Query: 332 --------------------GEGNVLGQLASAMPQA-----------------------V 348
EG V Q +SA A +
Sbjct: 323 TPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRPDVADREVTEQSAGIATI 382
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 383 RLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 197/433 (45%), Gaps = 91/433 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E ++ E+ FVVVM K+K + + + APAN T++ P T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A VP S+P LV G+ LE +++
Sbjct: 121 TA---EVPVSSP----------------------------------GLVVGAELEKAIEE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V A +A A
Sbjct: 144 LQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAAP 200
Query: 239 TQAQQPAAPAPTS-------------------GPNANPLDLFPQGLP------------N 267
A T+ + PL+LFPQG+P
Sbjct: 201 GADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAEE 260
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLR 323
TL FLR++ QFQA+R MVQ NP ILQ EL +QNP L LI +Q +FL+
Sbjct: 261 EAQEGEVNTLAFLRDNPQFQAIRAMVQGNPSILQPMLGELQRQNPQLYHLINSNQEEFLQ 320
Query: 324 LINEPVEG-----GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 378
L+NEP + GEG + + + ++ EE EA ERL A+GF +E + AC
Sbjct: 321 LLNEPSDFEAQGMGEGEM---------EQIELSKEENEACERLMALGFTMEQCVEAYIAC 371
Query: 379 NKNEELAANYLLD 391
+KNEE+AANYL +
Sbjct: 372 DKNEEMAANYLFE 384
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 210/431 (48%), Gaps = 63/431 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVV--VMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVV VM+TK K S+ A+T +APA+ TSS T Q T A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYG 160
T P P S + PAPA A A PA PV SS S+++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQ 217
A S LV G E V +I MG ++ E VI A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
V P AS G + A A A +SG + L
Sbjct: 238 VVVDPHQAASTGVPQSSTLAAVAATTTATTTTSSGXHP---------------------L 276
Query: 278 DFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
+FL N QFQ +R ++Q N P +LQ +G +NP L++ I +H+ F++++NEPV +
Sbjct: 277 EFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLNEPVXEAD 336
Query: 334 GNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
G G + A + VTP+E+EAIER G LV++ +FAC KN+ L
Sbjct: 337 GRGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER---XGIPEGLVIQAYFACEKNKNL 393
Query: 385 AANYLLDHMHE 395
AA++LL +
Sbjct: 394 AADFLLQQTFD 404
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/402 (33%), Positives = 181/402 (45%), Gaps = 95/402 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 83 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 104
Query: 121 PPQSVPE--SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P +S P+ + PA AP P+ + D+ + E T Q
Sbjct: 105 PVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQ----------EETAQA 154
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 155 IVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------Q 197
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP- 297
A+ G A LDFLR QF+ LR +VQ+NP
Sbjct: 198 ESAEHEE-----------------------GERAQGLGLDFLRQLPQFEQLRELVQSNPA 234
Query: 298 ---QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ-AVTVTPE 353
QI+Q++ + NP LM IQ +Q +F+ L+N G + A Q A+ VT
Sbjct: 235 ILPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVSSGGGGVAPSAGEQRQVAIHVTEA 294
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 295 ERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 336
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 222/470 (47%), Gaps = 112/470 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ---------AASNLVA 168
P ESAP + + A P SS SD+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSS-SDLVGELANASLQTRAESNLLM 168
Query: 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +A
Sbjct: 169 GEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFNA 221
Query: 229 GGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
G + N Q P AP P S P + LP S+ +FLR+ QF
Sbjct: 222 GDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQF 262
Query: 287 QALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------- 331
+R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 263 LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESASGNNTQRS 322
Query: 332 --------------------GEGNVLGQLASAMPQA-----------------------V 348
EG V Q +SA A +
Sbjct: 323 TPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRRDVADREVTEQSAGIATI 382
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 383 RLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 201/436 (46%), Gaps = 72/436 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP PPV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
+ LRN+ Q LR +VQ NP +LQ +LG+ NP+L+ + + T + + E EG +
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEGLD 326
Query: 334 GN----------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
+ Q V V+ EER+AIERL +GF+R LV++ +FAC+KNEE
Sbjct: 327 DDSSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIERLVGLGFERQLVVQAYFACDKNEE 386
Query: 384 LAANYLLDH-MHEFED 398
+AANYL++H +FE+
Sbjct: 387 MAANYLIEHGFDDFEE 402
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 182/356 (51%), Gaps = 60/356 (16%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPA---PAPAPAPAPAPV-------------SSVSDVYGQAASNLVAGSNLEA 174
+ PAPA A PA PA PV SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGV 177
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 336
R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 217 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 276
Query: 337 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 277 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 332
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 201/436 (46%), Gaps = 72/436 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K A TV A P S + A
Sbjct: 58 QIGVKEKDFFVVMLIKPKT----APTVPA-------------PASVPSGAGAAASTSATA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAP-APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + + A + APA A A A P S D + GSNL+ T+ +I
Sbjct: 101 PTPAAAQPATATPSSTTAPASTDADNASAATPASGTQD------PGFLVGSNLQKTIDEI 154
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVA------------- 224
++ G + RE V +A+RAA+NNP+RAVEYL +GIP P PV
Sbjct: 155 VN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVTLPTNAPSTVNPSA 212
Query: 225 -------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+AG + A Q P + P A P Q +P + L
Sbjct: 213 TTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQSIPT------SRAL 266
Query: 278 DFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
+ LRN+ Q LR +VQ NP +LQ +LG+ NP+L+ + + T + + E EG +
Sbjct: 267 EALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEGLD 326
Query: 334 GN----------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
+ Q V V+ EER+AIERL +GF+R LV++ +FAC+KNEE
Sbjct: 327 DDPSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIERLVGLGFERQLVVQAYFACDKNEE 386
Query: 384 LAANYLLDH-MHEFED 398
+AANYL++H +FE+
Sbjct: 387 MAANYLIEHGFDDFEE 402
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 198/398 (49%), Gaps = 65/398 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + FVVVM+ SK + + +T + A+ A TS + ST +T PA
Sbjct: 60 DCNIDSKKFVVVMV--SKATGAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADN-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S+P + P P+P A P ++ASN E T+Q I+
Sbjct: 116 --SSIPIAQPRVVEQLPSPVETRASEP-------------ESASN----DETERTIQNIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAGNPPA 237
DMG ++R V ALRA++NNP+RAVEYL +GIP++ P R+ +G+
Sbjct: 157 DMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTISPNRSVLSEDSGDLSG 213
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+Q P + P L FLRN FQ +RT+VQ NP
Sbjct: 214 SSQV-------PATDP-----------------------LAFLRNQPTFQQMRTVVQQNP 243
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS-AMPQAVTVTP 352
+ +LQ++G+ NP L+++I +Q F+R++NEP EG A V V+
Sbjct: 244 ELLNSVLQQIGQTNPALLQMISNNQEAFVRMLNEPNEGAAAAPAAASRGPADGFEVPVST 303
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+++EAI+RL+A+GF V++ +FAC KNE +AAN LL
Sbjct: 304 QDKEAIDRLKALGFPEHQVVQAYFACEKNENMAANLLL 341
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 157/303 (51%), Gaps = 46/303 (15%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P SA PA PA AP + S+ S+++ A S L
Sbjct: 53 SITPASTTASSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-- 336
QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 209 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 268
Query: 337 -------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 269 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 328
Query: 390 LDH 392
L
Sbjct: 329 LQQ 331
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/169 (61%), Positives = 117/169 (69%), Gaps = 10/169 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+KSK +S ST S AP +A TS+A PTST P + S A
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAA-PTSTPPVSVSPQAPAATA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
P + + P APAP + SDVYGQAASNLVAG
Sbjct: 120 APPASVAAPSPAPAPAPISSATATEG---------SDVYGQAASNLVAG 159
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 196/414 (47%), Gaps = 100/414 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-----------KVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT 109
GKVL D T+EE + + FVV+M+ + K V A PA S+ P++ Q
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIP 108
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+Q T P SV +++P AAP S +SD G
Sbjct: 109 AAAQV---TTVTPASVTDNSP--AAPQN---------------SGISD--GLTPEQ---- 142
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + G
Sbjct: 143 ---EETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------G 188
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
G Q A+ G LDFLR QF+ L
Sbjct: 189 GH------QESAEHEE-----------------------GERGQGLGLDFLRQLPQFEQL 219
Query: 290 RTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAM 344
R +VQ+NP QI+Q++ + NP LM IQ +Q +F+ L+N G G G+++ SA
Sbjct: 220 RELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAG 279
Query: 345 PQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
Q A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 280 EQRQVAIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 333
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 195/413 (47%), Gaps = 35/413 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
E ++ E F+VVM++K K + +A ++ + A +T + S TPA P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + S P AA A + PAP+ P ++ + ++G+ LE V I
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSI 177
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP---P 236
++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P P P
Sbjct: 178 IEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPATPSPAP 234
Query: 237 AQTQAQQPAAPAPTSGPNAN-PLDLFPQ-------------GLPNMGSNAGAGTLDFLRN 282
+ + P PNA +LF Q GL G LD L N
Sbjct: 235 VTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQSGTNRASEGLLGEEDAQGRQILD-LGN 293
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
Q LRT+++ NP ++Q L + NP L + LR++ GEG + G
Sbjct: 294 PQVLSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVLRML-----AGEG-LEG 347
Query: 339 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+ + +P + E+R +E++ AMG +E +F C +N E+A Y +
Sbjct: 348 EDSFEVPSLQQLADEDRTQVEQIVAMGIPERKAIESYFMCGRNLEMAVQYYFE 400
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 201/448 (44%), Gaps = 98/448 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ S + NQ S TST + S
Sbjct: 60 SYNVDEKKFIVVMLTRDS---------SYSNRNQLSVKESDKLTSTDDSRHSM------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAP--VSSVS--DVYGQAASNLVAGSNLEATV 176
P + S P + P P+ + ++ + +A SNL+ G TV
Sbjct: 104 PCEEANHSNSPSCRNTDDSVLSRETRPLPSDELIGELAQASLQSRAESNLLMGDEYNQTV 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 164 LSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNGLNESTNPS 216
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
Q A+ T P +++ + +FLR+ QF +R+++ N
Sbjct: 217 LIPSGPQTASATSTERP----------------ADSNSDPFEFLRSQPQFLQMRSLIYQN 260
Query: 297 PQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-------------------- 332
P +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESVATVPHVSNARTPSTLD 320
Query: 333 ---------EGNVLGQLASAMPQA---------------------VTVTPEEREAIERLE 362
EG Q ++A A + + ++++AIERL+
Sbjct: 321 NVSLFSPDLEGATSAQRSTAGTSAAQQIGSAADNEDLEQPLGVSTIRLNRQDKDAIERLK 380
Query: 363 AMGFDRALVLEVFFACNKNEELAANYLL 390
A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 381 ALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 189/406 (46%), Gaps = 86/406 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ F+VVM+ + K A+ + PA A +A ST+ T
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPSTEAVT---------- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+AP A + A A P E TVQ I+
Sbjct: 111 -------AAPTGTAQPAPQQASAAAPDALTP-------------------EQEETVQAIV 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R+ VIRALRAA+ N +RAVEYL + IP++ + GQ A+
Sbjct: 145 AMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDEEEL--------AGQHDEGEAEES 193
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
A + +A QG L+FLR QF+ LR +VQ+N
Sbjct: 194 AGEESA----------------QG------------LEFLRQLPQFEQLRELVQSNPAIL 225
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFLRLINEP-----VEGGEGNVLGQLASAMPQ--AVT 349
PQI+Q++ + NP LMR IQ +Q F+ L+N P +GG A A P+ A+
Sbjct: 226 PQIIQQIAQSNPALMRAIQSNQEQFVNLLNAPSTEGGGQGGAAPGGAPQAHAQPRGIAIE 285
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
VT ER+AI RL+AMGF LV+E +FAC+KNE+LA NY+L M E
Sbjct: 286 VTAAERDAINRLKAMGFPEQLVIEAYFACDKNEDLAVNYILARMDE 331
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 219/418 (52%), Gaps = 60/418 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++ A+ S++ A + P T + P +
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVN-------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
APP PA P+PA + + ++ +D S L+ G+ + + Q+L
Sbjct: 110 --------APPLQTPA-TPSPAGGASSGASSGATFND-----PSALLMGNQGQEAITQML 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAAY NP+RA+EYL +GIP++ P SA PA T+
Sbjct: 156 AMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE---PEREAPSAPAAGSARPAATE 209
Query: 241 A-------------QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+Q AA A G + G + S G+L+FLRN+ FQ
Sbjct: 210 GASESQVQESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNNPHFQ 269
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E V+ +
Sbjct: 270 QLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQ 320
Query: 344 MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 321 LPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 378
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/430 (32%), Positives = 202/430 (46%), Gaps = 77/430 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K ++ PT P ++ TPAP
Sbjct: 58 STKIKADDQVIFMISK---------------------VAAKKPT---PAASTPTPAPAAQ 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P Q +SAP + PAPAP+ A P P AS GS E + I
Sbjct: 94 PTQPTAQSAPVQPSTRTVPAPAPSSQSAQPTPSQQPEQAGDFDASTFATGSAREKAIANI 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-------------TAVPPVARA 226
++MG ++R V +ALRAA+NNP+RAVEYL +GIPEQ TAV
Sbjct: 154 MEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVEESGEQ 210
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 285
+ G G A QP+AP+ T A DLF G N G+G+ +
Sbjct: 211 TEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAAGGNPGSGSSPGASHRTG 265
Query: 286 -------FQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI----NEPVE 330
+R +V+ NP+ +L++L +Q P L LIQ++ +F+ +I NE
Sbjct: 266 GAPSGGGLDQIREIVRTNPEMLEPLLEQLSQQYPQLNGLIQQNPEEFINMILNGVNEDEL 325
Query: 331 GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
GEG LG PQA V +T E++ AI RL +GF+ L ++V+FAC+KNEE
Sbjct: 326 SGEG--LG--TEVAPQAGEDGTVEVPITEEDQAAINRLVELGFESNLAIQVYFACDKNEE 381
Query: 384 LAANYLL-DH 392
LAAN L DH
Sbjct: 382 LAANILFNDH 391
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREA 357
+LQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 358 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
I+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 61 IQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 101
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 153/303 (50%), Gaps = 46/303 (15%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSV-----SDVYGQAASNL 166
S TPA T A + P S PA P P + S+ S+++ A S L
Sbjct: 53 SVTPASTTASSEPAPASVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 282
AS G + A +SG G P L+FLRN
Sbjct: 170 PPTASTGAPQSSVAAAAATTTATTTTASSG-----------GHP----------LEFLRN 208
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 332
QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 209 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 268
Query: 333 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 269 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 328
Query: 390 LDH 392
L
Sbjct: 329 LQQ 331
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 208/434 (47%), Gaps = 93/434 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 117 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 153 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 209
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 210 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 254
Query: 274 AG--TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
G LDFLRN+ FQ LR +VQ PQ ILQ++ NP + +LI +++ FL+L++E
Sbjct: 255 EGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 314
Query: 328 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+G A+P + VT EER+AIERL +GF R +V+E +FAC+KNEEL
Sbjct: 315 EGDG-----------ALPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEEL 363
Query: 385 AANYLLDHMHEFED 398
AAN+L ++ + ED
Sbjct: 364 AANFLFENTDDPED 377
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 207/414 (50%), Gaps = 58/414 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E FVV M +S P + ++++ +++ P TPA +
Sbjct: 58 DYKIEEKGFVVCM-------------ISNKPKAASSSSAAGSSSASTPVKAPSTPAQSSV 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP SAP A + + + A P P +V G+ I+
Sbjct: 105 PPTP---SAPAQAVTGSSTSTSAAVPETPTPAGAV-------------GTTFNDPEDAIV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA----GGQAGNPP 236
+M G ++R + RA+RAA+ NP+RAV+YL +GIPE A++S A +
Sbjct: 149 NMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAA 208
Query: 237 AQTQAQQPAAPAPTSGPNANP--LDLFPQ---------GLPNMGSNAGA---GTLDFLRN 282
A PA SG A P ++LF G + G + GA G LDFLRN
Sbjct: 209 RPAAATAPATGGSASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRN 268
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
+ QFQ LR +VQ PQ ILQ++G NP L I + FLRL++E +G L
Sbjct: 269 NPQFQQLRQVVQQQPQMLEPILQQVGMGNPQLAATISSNPEAFLRLLSEDPADEDGGALP 328
Query: 339 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
++ ++VTPEE +AIERL +GFDR +V++ +FAC+KNEELAAN+L +
Sbjct: 329 PGSNH----ISVTPEESDAIERLCRLGFDRDMVIQAYFACDKNEELAANFLFEQ 378
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 156/298 (52%), Gaps = 55/298 (18%)
Query: 126 PESAPPPAAPAPAPAPA---PAPAPAPAPVSSV-------------SDVYGQAASNLVAG 169
P SA + PAP A P PA PV++ S+++ A S LV G
Sbjct: 132 PASATASSEPAPVSATKQENPVEQPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTG 191
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 192 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP-------------- 234
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G+ +Q P P T+GP ++ +++G L+FLRN QFQ
Sbjct: 235 ---GDRESQAVVDPP--PVATTGPPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQ 289
Query: 288 ALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV------- 336
+R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 290 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGG 349
Query: 337 ----LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 350 GSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 407
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 200/407 (49%), Gaps = 63/407 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E++F++ M++K KV ++ A+ +AAP A + P T+ +V
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSR-----SV 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A P + P P A S+ D+ ++ A + + + +
Sbjct: 112 ATPGA-------PTNSGNVVGNTETPTTGGADASTTGDIGAESGPAASATAAVTTAINNM 164
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+DMG + R+ V A+RAAYNNPERAVEYL +GIP+
Sbjct: 165 VDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI-------------------- 201
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----TLDFLRNSQQFQALRTMVQA 295
++ P S + DLF + + G A LDFLR++ QF +R MVQ
Sbjct: 202 -GEEADDDVPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQQ 257
Query: 296 NPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT-- 349
P +L Q+L NP L LI ++ FL L+ E +E G G V P+ T
Sbjct: 258 QPHLLEPLIQQLAASNPQLAALITQNSEAFLHLLGEGLEEGSGGV--------PEGTTEI 309
Query: 350 -VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
VTPEE +AIERL A+GF+R LV++ +FAC+KNEE+ ANYLL+H ++
Sbjct: 310 QVTPEESDAIERLAALGFERNLVIQAYFACDKNEEVTANYLLEHGYD 356
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 190/409 (46%), Gaps = 94/409 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S + AS+ S A + S+ S +T +TP P
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKDKSTAEETPQP--- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PE PAAP + A + E+TVQ I+
Sbjct: 116 PTAAEPERTAEPAAPV-----------------------------ISAELDFESTVQSIM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG ++R+ V +ALRA+++N ERAVEYL +GIPE+ A + P
Sbjct: 147 DMG---YNRQQVEQALRASFSNRERAVEYLITGIPEELL----QEQEAEESSEEDPLSFL 199
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
QP + NP L N L+ + Q NP +L
Sbjct: 200 RDQPQFQQMRAVIQQNP------SLLNT-------------------VLQQIGQTNPALL 234
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPV----------EGGEGNVLGQLASAMPQAVT- 349
Q I +HQ F+R++NEPV + G N + Q PQ+V
Sbjct: 235 QA-----------ISQHQQAFVRMLNEPVNPPATGAVIQDSGVDNPIPQ----QPQSVVQ 279
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
V+P++REAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 280 VSPQDREAIERLKALGFPEHMVVQAYFACEKNENLAANFLLS--QNFDD 326
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 207/434 (47%), Gaps = 93/434 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 83 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 141
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S + P SD S L++GS EA + +
Sbjct: 142 ATPSPAAATQP------------------------SDAAFNDPSALLSGSQGEAVISHME 177
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-------------------- 220
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 178 SMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQ 234
Query: 221 PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNAG 273
PP A A GN PA T ++P AA A T GP+ GS AG
Sbjct: 235 PPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAAG 279
Query: 274 AG--TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
G LDFLRN+ FQ LR +VQ PQ ILQ++ NP + +LI +++ FL+L++E
Sbjct: 280 EGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 339
Query: 328 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+G A+P + VT EER+AIERL +GF R +V+E +FAC+KNEEL
Sbjct: 340 EGDG-----------ALPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEEL 388
Query: 385 AANYLLDHMHEFED 398
AAN+L ++ + ED
Sbjct: 389 AANFLFENTDDPED 402
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 211/416 (50%), Gaps = 66/416 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ P+PA A S S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPS-TPSPAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A + ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQSAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQAL 289
AP++G + P++LF G G +L+FLRN+ FQ L
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGGRGARAAGGAELPSLEFLRNNPHFQQL 261
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 345
R +VQ PQ ILQ++ NP + +LI +++ FL+L++E + E A+P
Sbjct: 262 RQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------ALP 312
Query: 346 QAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + ED
Sbjct: 313 PGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 191/406 (47%), Gaps = 69/406 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K + + PPT+ +S++
Sbjct: 58 SYKIKEGDSIIYMISKAK---------------KPVVPVAEPPTAATTGDSSES------ 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A P AP P+ A APVS +A S GS EAT+Q I+
Sbjct: 97 -------AASEPVAPTPS-------ATTVAPVSE------EAGSAFAQGSEREATIQNIM 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPAQ 238
+MG +DR+ V +ALRAA+NNP RAVEYL +GIPE Q V P A A+
Sbjct: 137 EMG---YDRDQVEQALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVAAE 193
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQALRTMVQ 294
T TS N N LF ++AG G + L ++ Q Q LR +Q
Sbjct: 194 TTQDDKDHDHDTSDRNVN---LFEAAAAANNASAGEGDASDPVGELDDAAQLQLLREAIQ 250
Query: 295 ANPQILQELGKQ----NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 347
NP+++ EL +Q NPH+ +LIQ+ F IN+ G AM +
Sbjct: 251 TNPELIHELLEQISRSNPHIAQLIQQDPEGF---INQFFGAGAEEGFEIDDEAMEEGEDA 307
Query: 348 ---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ ++ E++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L
Sbjct: 308 GVRIEISEEDQSAINRLCELGFDRNLVIQVYMACDKNEEVAADILF 353
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 204/415 (49%), Gaps = 51/415 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++E +FVVVM+TK K + STV + PA +AP +QP +
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPA-------TAP---SQPAEKPKEEKKEET 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + + P +A A A A ++S A S L+ G+ E V +++
Sbjct: 111 KEEKIDDKPPTESASASTETAAGTTTTASTSLASTLS---AAESTLLTGAAYENVVAELM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + + + PA +
Sbjct: 168 NMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEAEAPAPAAAEQPEPAAAR 223
Query: 241 AQQPAAPAPTSGP---------NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
+ PA PA T G P G +G + L FLR QFQ +R
Sbjct: 224 TESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMRQ 282
Query: 292 MVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 347
++Q NP +LQ+LG+ NP L++LI +HQ F++++N PV G + + G
Sbjct: 283 IIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQFIQMLNNPVGGEQQSGGGGGGGGSGGG 342
Query: 348 -----------------VTVTPEEREAIERLEAMGFDRA---LVLEVFFACNKNE 382
+ VTP+E+EAIER+ A + + + E+ C+ +E
Sbjct: 343 APTSGGQVGTGPGGTSYIQVTPQEKEAIERVLAKMYSKCNSDIRYELMKKCHVDE 397
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 192/402 (47%), Gaps = 74/402 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVA-ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + +FVVVM K KV + S ++ Q S+ + QP++T +
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETVQPSSTPLLTSTAS 119
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + + + P D+ ++ + GS L++++ ++
Sbjct: 120 ASETTSVSTTSTAVSSQP-------------------DI----GTSFLTGSALDSSINEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ +G + RE V+RAL+ ++ N +RA EYL SG VP + + P
Sbjct: 157 MSLG---FSREQVLRALQRSFQNADRAAEYLLSG-----NVPELVE--------DAPGDI 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANP- 297
+ A PA + GA G L+FLR+ QF+ +R+ VQ +P
Sbjct: 201 DEESEALPA----------------------DVGAEGDLNFLRDFPQFRMMRSQVQRHPD 238
Query: 298 ---QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG------GEGNVLGQLASAMPQAV 348
Q+LQE+G+ NP L++LI ++Q F+ L+NEP G E G + +
Sbjct: 239 TLPQLLQEIGRSNPQLLQLISQNQEAFIALLNEPETGESSAPVSEDAFGGDAGAGGGFQI 298
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
VT EE+ AI+R+ MGF+ A V++ FFAC KNE+LA +LL
Sbjct: 299 HVTTEEKAAIDRIVGMGFNEAEVIQAFFACEKNEQLAIEFLL 340
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 184/398 (46%), Gaps = 117/398 (29%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG---------------------- 160
++ P +AP P+ P P PAPA + P S+ D
Sbjct: 90 EASPTAAPEPSTPFP---PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGS 146
Query: 161 -----QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 147 SGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 203
Query: 216 EQTAVPPVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
G+P P Q+ AP + AG
Sbjct: 204 -----------------GSPEPEHGSVQESQAPE------------------QPATEAGE 228
Query: 275 GTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP-- 328
L+FLR+ QFQ +R ++Q N P +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 229 NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPG 288
Query: 329 ----VEGGEGNVLGQLASAMPQA--VTVTPEEREAIER 360
+ EG V G L PQ + VTP+E+EAIER
Sbjct: 289 ELADISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIER 325
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 204/445 (45%), Gaps = 95/445 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + + +++ +T + + + + S +P T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTR 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+S+ S P + A A + S +A SNL+ G TV +
Sbjct: 119 NSEESILLSETTPISTDNLIGEL-----AQASLQS------RAESNLLMGDEYNQTVLSM 167
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 168 VEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTID----NDVNESTNPNGPQ 220
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+ P S N++P +FLR+ QF +R+++ NP
Sbjct: 221 TGSASSVERP-SESNSDP-------------------FEFLRSQPQFLQMRSLIYQNPHL 260
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE------------------GNVL 337
+LQ++G+ NP L++LI E+Q FL ++N+P+E NV
Sbjct: 261 LHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESSATVPRVSSARTHSTLANVN 320
Query: 338 GQLASAMPQA--------------------------------VTVTPEEREAIERLEAMG 365
+S + A + + ++++AIERL+A+G
Sbjct: 321 NLFSSDLEAASAERSTVATSAAQQSGSAAENEDLEQPLGVSTIRLNRQDQDAIERLKALG 380
Query: 366 FDRALVLEVFFACNKNEELAANYLL 390
F ALVL+ +FAC KNEELAAN+LL
Sbjct: 381 FPEALVLQAYFACEKNEELAANFLL 405
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 188/384 (48%), Gaps = 91/384 (23%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV------ 188
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTVAPPQ--SVPESAPPPAAPAPA 138
+ P+ + + P + +P + Q+ PA TVA Q +VP S P AA
Sbjct: 189 -------SKPSKEPTASVEKLPEAAKPVQSEQSIPANTVASVQETTVPRSDVPAAA---- 237
Query: 139 PAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRA 198
P S+ + S LV G+ E + +I+ MG ++R VIRA+RA
Sbjct: 238 -----------GPESATGE------SALVTGAEYERAISEIVGMG---FERSMVIRAMRA 277
Query: 199 AYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNAN 256
++NNP+RAVEYL SG IP V AGG+ + P + A+ +P+S +
Sbjct: 278 SFNNPDRAVEYLLSGNIPNAV----VREQPAGGRERVDTPGD---EHSASESPSSEDPIS 330
Query: 257 PLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMR 312
L P QFQ +R +VQAN PQ++Q++G N L+R
Sbjct: 331 ALASLP----------------------QFQQMRALVQANPELLPQLIQQIGADNSELLR 368
Query: 313 LIQEHQTDFLRLINEP----------VEGGEGNVLGQLASAMPQAV--TVTPEEREAIER 360
LIQE++ FL +N P +E E G + P+ + T+T EER AIER
Sbjct: 369 LIQENEQGFLEFLNAPISQDAGEPEGIESSETTTPGNVRQGEPRQIILTMTQEERAAIER 428
Query: 361 LEAMGFDRALVLEV---FFACNKN 381
L+A+GF LV++V F N+N
Sbjct: 429 LQALGFPEELVIQVNEGIFVLNRN 452
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 184/361 (50%), Gaps = 70/361 (19%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q + TP P +A P S P S
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALA-PTSTPASIT 55
Query: 131 PPAAPAPAPAPA--------PAPAPAPAPV-------------SSVSDVYGQAASNLVAG 169
P +A A + + PA PA PV SS S+++ A S LV G
Sbjct: 56 PASATASSEPASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTG 115
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVA 224
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A
Sbjct: 116 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQA 172
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
++ Q+ A +SG G P L+FLRN
Sbjct: 173 ASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQP 211
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-------- 332
QFQ +R ++Q NP +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 212 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGG 271
Query: 333 -EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 272 GGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ 331
Query: 392 H 392
Sbjct: 332 Q 332
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP 102
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 46/261 (17%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 8 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 64
Query: 213 GIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM 268
GIP Q V P PP P +PA +
Sbjct: 65 GIPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATTT--------ATT 104
Query: 269 GSNAGAGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRL 324
+ +G L+FLRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F+++
Sbjct: 105 TTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 164
Query: 325 INEPVEGGEGNV---------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRA 369
+NEPV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 165 LNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEG 224
Query: 370 LVLEVFFACNKNEELAANYLL 390
LV++ +FAC KNE LAAN+LL
Sbjct: 225 LVIQAYFACEKNENLAANFLL 245
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 214/418 (51%), Gaps = 68/418 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +S+ A T S AP T ++ ++ P A
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAA------------TPSQAPSTPSRAVASTPAAPPAPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P APA A P V S L++G+ EA V Q+
Sbjct: 106 PSAATSTPAVPATPSPAAPAQPSADTP----------VAFNDPSALLSGAQSEAVVAQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQAGNPP 236
MG + R + RA+RAA+ NP+RA+EYL +GIPE + + + G A +PP
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASPP 212
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---------------TLDFLR 281
A + + P+ T G P++LF + G+ GAG L+FLR
Sbjct: 213 APSAPSGESVPSSTGGDE--PVNLF-EAAAQAGTGEGAGRGARAGVEGAGEALPNLEFLR 269
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
N+ FQ LR +VQ PQ ILQ++ NP + +LI +++ FL+L++E +G
Sbjct: 270 NNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG------ 323
Query: 338 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
A+P A++VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 324 -----ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 376
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 187/400 (46%), Gaps = 101/400 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + P +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------VPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 358
+LQ+LG++NP L+
Sbjct: 258 LLQQLGQENPQLL----------------------------------------------- 270
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL FED
Sbjct: 271 -QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 307
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 144/419 (34%), Positives = 199/419 (47%), Gaps = 78/419 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPAPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ+ A A A A P S L+ G E + Q+
Sbjct: 106 NPQTTDAPATTSPAAPAAAGGATFNDP----------------SALLMGPQGEQVIAQME 149
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 150 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 197
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNMGSNAGA--GTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 198 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNL 255
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
DFLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 256 DFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD- 314
Query: 334 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 315 ----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 368
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 137/252 (54%), Gaps = 41/252 (16%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 216 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 271
Q V P A+ G + A +SG G P
Sbjct: 200 GDRESQAVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 243
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINE 327
L+FLRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NE
Sbjct: 244 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 298
Query: 328 PVEGGEGNVLGQLA---------SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 378
PV+ G G S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 299 PVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 358
Query: 379 NKNEELAANYLL 390
KNE LAAN+LL
Sbjct: 359 EKNENLAANFLL 370
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 205/418 (49%), Gaps = 75/418 (17%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K SSS A T S AP+ ++ +S P P ++ A S
Sbjct: 126 GFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPPATPSPAA 184
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
+ P SD S L++GS EA + + MG +
Sbjct: 185 ATQP------------------------SDAAFNDPSALLSGSQGEAVISHMESMG---F 217
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAP 247
R+ + RA+RAA+ NP RA+EYL +GIPE + + Q A A P P
Sbjct: 218 PRDDINRAMRAAFFNPTRAIEYLLNGIPEN-----IQQEQEQQQQQQQAATATAASPQPP 272
Query: 248 APTSGPNA-------NPLDLF-----------PQGLPNMGSNAGAG--TLDFLRNSQQFQ 287
A ++G NA P++LF P G GS AG G LDFLRN+ FQ
Sbjct: 273 AASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHGA-RSGSAAGEGLPNLDFLRNNPHFQ 331
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LR +VQ PQ ILQ++ NP + +LI +++ FL+L++E +G A
Sbjct: 332 QLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEGDG-----------A 380
Query: 344 MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+P + VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 381 LPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 438
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 201/418 (48%), Gaps = 67/418 (16%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K + S ++ VS+ + +++ P + + T T P + P
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPAAPV 564
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSW 187
AP P S L+ G E V Q+ MG +
Sbjct: 565 VAPVAGGSTTFNDP----------------------SALLMGPQGEQVVAQMESMG---F 599
Query: 188 DRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVARA 226
R + RA+RAAY NP+RA+EYL +GIPE TA PP A
Sbjct: 600 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTT-A 658
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNSQ 284
+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 659 AVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLG--NLDFLRSNP 713
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E ++ QL
Sbjct: 714 HFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQL 768
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 769 PPGAHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 825
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 197/447 (44%), Gaps = 98/447 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + EN V+VM K SS T+ T ++ + V
Sbjct: 59 D-ILKENDIVIVMACKKIFSS------------------------TKNNQTKESSSKDVI 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S PP A + AP ++S A S LV G L+ T+ I
Sbjct: 94 KSNEKASSLPPNCDQNNATSNAPEEGTENRSLNS-------AESALVTGEKLKETIDNIC 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT---------------------A 219
MG ++RETV +A+ A+NNP RA++YL +G PE++ A
Sbjct: 147 AMG---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEINAINTITGMNEMNPLNA 203
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAG--- 273
+P V + + + ++ AP+ P L N S N+G
Sbjct: 204 MPDVNETNETNETNETNDNSYEREDNENAPS----------LPNLLNNYNSLADNSGQSV 253
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI---- 325
A T D R+S F LR + +NPQ IL+ +G+ +P + I+E+Q +F+R I
Sbjct: 254 ADTPDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYG 313
Query: 326 ---------NEPVEGGEGNVLGQLASAMPQA----VTVTP---EEREAIERLEAMGFDRA 369
N+ +EG E G L P + +TP E E+I++LE++GF +
Sbjct: 314 NNDHVGSSENDLMEGEEFADPGNLNITDPNNENFQIPITPLNENEMESIKKLESLGFPKH 373
Query: 370 LVLEVFFACNKNEELAANYLLDHMHEF 396
L LE F AC+KNEE+AANYL ++M+++
Sbjct: 374 LALEAFIACDKNEEMAANYLFENMNDY 400
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 187/400 (46%), Gaps = 101/400 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 358
+LQ+LG++NP L+
Sbjct: 258 LLQQLGQENPQLL----------------------------------------------- 270
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 -QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 192/407 (47%), Gaps = 115/407 (28%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSVSDVYG----QAASNLVAGSNLEAT 175
S PPPAA +P+ AP +P S S AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 296 N----PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 351
N P +LQ+LG++NP L+
Sbjct: 251 NPALLPALLQQLGQENPQLL---------------------------------------- 270
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 --------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 153/254 (60%), Gaps = 12/254 (4%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +
Sbjct: 121 SSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMT 177
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGS 270
GIP+ A P + A+ A + A+ + PA P L MG
Sbjct: 178 GIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQ 237
Query: 271 NAGAG-TLDFLRNSQQFQALRTMVQANPQILQELGKQ----NPHLMRLIQEHQTDFLRLI 325
GAG ++LR QF ++ MVQ NPQ+L L +Q NP ++++I +HQ +F+ L+
Sbjct: 238 QGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALL 297
Query: 326 NEPVEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
NEP++GG G G A P + + VT EE+EAI+RL+A+GF+R +V+E FFAC+K+E+
Sbjct: 298 NEPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKEAIDRLQALGFERHVVIEAFFACDKDEQ 357
Query: 384 LAANYLLDHMHEFE 397
+ ANYL DH HE E
Sbjct: 358 VTANYLFDHGHELE 371
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 194/413 (46%), Gaps = 86/413 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ EN V+ M++K K +++ + A
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQA---------------------------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+PA A AP PA PA S + AS +GS E +Q I+
Sbjct: 90 -------------SPAGAAAPVAEPA-QPAQEGSSATPAAFDASTFASGSVRETAIQNIM 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP A Q+G P QT+
Sbjct: 136 AMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP-----AAAQSGEP--QTE 185
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL-DFLRNSQQFQALRTMVQANPQ- 298
QPAA + PN + L + G +A DF+ +LR ++Q P+
Sbjct: 186 -DQPAAEDTNASPNPDNLFEAAAAAGSQGQDADQQQEGDFMG------SLREILQQQPEM 238
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLIN---------------EPVEGGEGNVLGQL 340
+LQ+L NP L ++Q + F+R I E +EG EG G+L
Sbjct: 239 AEAVLQQLAASNPQLAEIVQSNPEAFMRYITDGDQNALAQALGVPPEYMEGVEGE--GEL 296
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 392
+ + +T EE EAI RL +GF+R LV++V+FAC+KNEE+ AN L DH
Sbjct: 297 PEGATR-IQITQEENEAINRLCELGFERDLVIQVYFACDKNEEMTANLLFSDH 348
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 187/400 (46%), Gaps = 101/400 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAAGED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 358
+LQ+LG++NP L+
Sbjct: 258 LLQQLGQENPQLL----------------------------------------------- 270
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 -QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 198/444 (44%), Gaps = 89/444 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD----V 56
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD V
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 57 TTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L+EN + V+VM K SS T + ++SSA ++ T
Sbjct: 59 DVLKENDI-----VIVMACKKIFSSKNNQT-------KESSSSSANVLKSKEKT------ 100
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P PA AP A S A S LV G L+ T+
Sbjct: 101 ------------------PLPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETI 142
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAG 233
I MG ++RE V +A+ A+NNP RA++YL +G P++ V ++ + + G
Sbjct: 143 DNICAMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEMG 199
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-------GLPNMGSNAGA----------GT 276
A + T+ N + + + LPN+ +N A +
Sbjct: 200 AANAANAMRDVNETNETNETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPDS 259
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI-----NE 327
D R+S F LR + +NPQ IL+ +G+ +P + I+E+Q +F+R I N+
Sbjct: 260 TDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGTND 319
Query: 328 PVEGGEGNVLG--QLASAMPQAVT----------VTP---EEREAIERLEAMGFDRALVL 372
E +++ A Q +T +TP E E+I++LE++GF + L L
Sbjct: 320 HTANTENDLMAGDAFADQGNQNITDPNNENFNIPITPLNENEMESIKKLESLGFPKHLAL 379
Query: 373 EVFFACNKNEELAANYLLDHMHEF 396
E F AC+KNEE+AANYL ++M+++
Sbjct: 380 EAFIACDKNEEMAANYLFENMNDY 403
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 209/418 (50%), Gaps = 75/418 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K AP ++ P+ TP+ A
Sbjct: 58 TYNIEEKGFIVCMVSKPK----------------------APSSAATPSQAPSTPSRAAA 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AAP+ PA APAP + + S L++GS EA + Q+
Sbjct: 96 STPAAPSAPAPSAAPSAPAVPATPSPAAPAPAPTDASAAFNDPSALLSGSQSEAVISQME 155
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ +A+A A P A +
Sbjct: 156 SMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQEQQQQAAAAAAAPRPSAPS- 211
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------------------TLDFLR 281
AP+S P++LF + AG G LDFLR
Sbjct: 212 ----GESAPSSTGGDEPVNLF-----EAAAQAGTGEGTGRGARAGAVGAGEGLPNLDFLR 262
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
N+ FQ LR +VQ PQ ILQ++ NP + +LI +++ FL+L++E +G
Sbjct: 263 NNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG------ 316
Query: 338 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
A+P A++VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 317 -----ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 369
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 186/400 (46%), Gaps = 101/400 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K + A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTPAPPEASPTAAPESSTSFPPA---PTSGMSHPPPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 358
+LQ+LG++NP L+
Sbjct: 258 LLQQLGQENPQLL----------------------------------------------- 270
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 -QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 199/419 (47%), Gaps = 74/419 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATSTPAAPAPAPAAAGGATFNDP------------SALLMGPQGEQVIAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 154 SMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATTA 201
Query: 241 AQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGTL 277
PAAPA T G ++LF QGL G G L
Sbjct: 202 PSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNL 259
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
DFLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 260 DFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD- 318
Query: 334 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 319 ----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 197/408 (48%), Gaps = 95/408 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLK E+EV V D+ K +E + + A+ Q LIH GK+LK L
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLPN--MQANSQKLIHAGKILKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E ++V+ S T SA PA ++SA T + T ++
Sbjct: 59 DYPDIKEGDKIIVI--------SSKKTESAKPAEPKLDSTSAVATPPKVETATENS---- 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
Q++P +A P + +P+ S LV GS L+ + +I
Sbjct: 107 ---QNLPRTATPNVSQESHQSPS---------------------SRLVMGSELDQNINRI 142
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG +DR +V RA+ AA+NNPERAVE+L +G +P V + G Q N PA+
Sbjct: 143 CEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPSVNLENPGTQ--NTPAE- 191
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
QA+ NA D+F L++ F+ +R VQ++PQ+
Sbjct: 192 QAE-----------NAGGEDVF----------------RMLQSHPMFEQIRQAVQSDPQL 224
Query: 300 LQEL----GKQNPHLMRLIQEHQTDFLRLIN-----EPVEGGEGNVLGQLASAMPQAVTV 350
LQ++ G+ NP L++ I + Q +F+ LIN +P E N P V++
Sbjct: 225 LQQILENIGQTNPELLQTIIQRQDEFMDLINSGAEVDPYSNPETN---------PNIVSL 275
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
T E E+IERLE +GF R V+E + AC+KNEELAANYLL++ H+F D
Sbjct: 276 TQVEMESIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFTD 323
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 198/420 (47%), Gaps = 76/420 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V M+TK P T+T T+SQ P+ PT
Sbjct: 58 SYNIEEKGFIVCMVTK-------------------------PKTTTPAATSSQAPSTPTP 92
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + AP PA ++ S L+ G E + Q+
Sbjct: 93 AVASTPAAPAPASNPQPTDAPATTTPAAPAPAPAAAGGATFNDPSALLMGPQGEQVIAQM 152
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 153 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 200
Query: 240 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGT 276
PAAPA T G ++LF QGL G G
Sbjct: 201 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGN 258
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LDFLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 319 -----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 208/416 (50%), Gaps = 66/416 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ P + P AA P+ A + + S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPSTPSPAAAGAAQAQGSAFNDP-SALLSGTQSEAVVAQME 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A ++
Sbjct: 154 AMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQTAAPES- 209
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQAL 289
AP++G + P++LF G GA +L+FLRN+ FQ L
Sbjct: 210 -------APSAGDD-EPVNLFEAAAQAGGQEGGARGARAAGGAELPSLEFLRNNPHFQQL 261
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 345
R +VQ PQ ILQ++ NP + +LI +++ FL+L++E + E A+P
Sbjct: 262 RQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------ALP 312
Query: 346 QAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + ED
Sbjct: 313 PGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 216/418 (51%), Gaps = 70/418 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL +GIPE R++A A
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQRSAATTPA--- 203
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLDFLRNSQQFQ 287
A A AP TSG + P++LF GAG +LDFLRN FQ
Sbjct: 204 -APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQ 261
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LR +VQ PQ ILQ++G+ NP + +LI +++ FL+L++E + +A
Sbjct: 262 QLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-----------AA 310
Query: 344 MPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + +D
Sbjct: 311 LPPGTTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 368
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 202/417 (48%), Gaps = 78/417 (18%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTS----------------SAPPTSTQPTTTSQTPA 116
++ + + +++ A + A A Q+ + +AP TST+ TPA
Sbjct: 73 LVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPATSTR-----ATPA 127
Query: 117 P-TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P + SVP ++ A P P P+P P A A SS + QAA L+ E
Sbjct: 128 PASSTCAMSVPATS-TRATPRLPPCPSPTPDDAIAGPSSRAQPSEQAARALLTRPASEQM 186
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARASAGG 230
V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S G
Sbjct: 187 VAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSSGAG 243
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
++ + +A + AA TSG +PLD+ LRN +F+ LR
Sbjct: 244 RS----SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFEELR 277
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLIN--------------EPVEGG 332
++Q P +LQ L Q+P L ++++Q + ++ E V+
Sbjct: 278 RIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEEDGSEGGGGGEGVDNA 337
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
E + + VTP+E+ AIERL+A+GF LV++ +FAC KNE LAA+ L
Sbjct: 338 E---TAETVREDDSYIEVTPQEQAAIERLKALGFPEGLVIQAYFACEKNEILAASLL 391
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 166/362 (45%), Gaps = 117/362 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N+V+E S + VM K + + S+ S P QA A P+ST T
Sbjct: 58 ANEVSEKSIIAVMKRKHASTVTSTSSASLKPQVQA-----AHPSSTASNMTY-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+S+ ES +QQIL
Sbjct: 105 --ESISESG----------------------------------------------IQQIL 116
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M G+W RE V AL A N+ ++AVEYLY G+PEQ+ P +T+
Sbjct: 117 EMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQS---------------EDPHKTE 161
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
Q P + +A +LD LRN+ +F+ +R +VQ++P
Sbjct: 162 GTQEHTQEPEASQDA----------------IQEWSLDALRNTPEFEYVRPLVQSDPSFL 205
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLI-----------------NEPVEGGE-GNVLG 338
L+ + + NP L++ I +++ DFLRL+ NEP GGE GN +G
Sbjct: 206 EEILEVIEEHNPQLVQFILDNKADFLRLVLDQPQEHQDDDVLHFQSNEPNNGGESGNQVG 265
Query: 339 QL 340
+
Sbjct: 266 KF 267
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 138/405 (34%), Positives = 201/405 (49%), Gaps = 50/405 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG V Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQGHAV---ESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ A++ S + + P T P+ P
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P AP PA P AP PA A D Q+ N++
Sbjct: 118 QPPNAPLLAPAPATPVAAPQPAQERALGDLSSFVTGDALQQSIQNMI------------- 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V+RALRA++NNP+RAVEYL++GIP + A N Q
Sbjct: 165 EMG---FERDQVMRALRASFNNPDRAVEYLFNGIPAHLEATAAGTPAP---APNLFQLAQ 218
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
QQ +G G P M G L L+N+ QFQ LR ++ NP ++
Sbjct: 219 QQQQQQQQQATG-----------GFPGM---PGGVDLAALQNNPQFQQLRQVIAQNPALV 264
Query: 301 QELGKQ----NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPE 353
Q L +Q NP +L+ ++ L + GEG+ G A+P + +TPE
Sbjct: 265 QPLIQQLAGANPQFAQLLAQNPEALLTALGL----GEGDFEGD-EGALPPGTHVINITPE 319
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E+EAI+RLEA+GF R V+E +FAC+KNEELAANYL D FED
Sbjct: 320 EQEAIQRLEALGFPRQAVIEAYFACDKNEELAANYLFD--SGFED 362
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 208/434 (47%), Gaps = 92/434 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSRAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARAS-----A 228
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE + A ARA A
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTPA 203
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------- 272
GG AG A QA P+SG + P++LF
Sbjct: 204 GGNAG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAGGARSGGTGGAGGGA 253
Query: 273 -GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
A +LDFLRN+ QFQ LR +VQ PQ ILQ++G NP L ++I + FL+L+ E
Sbjct: 254 LNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQLLAE 313
Query: 328 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ + +P QA++VT EEREAIERL +GF+R LV++ +FAC+KNEEL
Sbjct: 314 DADED---------APLPPGAQAISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEEL 364
Query: 385 AANYLLDHMHEFED 398
AAN+L D + +D
Sbjct: 365 AANFLFDQPDDADD 378
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 128/468 (27%), Positives = 201/468 (42%), Gaps = 110/468 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSS-----------------GAST-VSAAPANQAQTTSSAP 102
KV E F+VVML++ +S G++T + P Q SSA
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 103 PTSTQPTTTS-QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
S + S ++ A P PA + +++ S + +
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAPEVPIPATDYSSIDLVGELANAS-LQSR 178
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP
Sbjct: 179 AESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIP------ 229
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
Q + P PN GLP + + A +FLR
Sbjct: 230 ------------------QDENLFNPGDEEEPNRVETSHRQGGLP---AESAADPFEFLR 268
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEG 334
+ QF +R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 269 SQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLDEEAADNA 328
Query: 335 NVLGQLASAMPQAVTVTP------------------------------------------ 352
G+ S+ P+ TP
Sbjct: 329 QRAGRTQSSSPRRTESTPTTNPSEESNAGGHRSVAGSDNPSIAIAPEGDDSVATGRNIQA 388
Query: 353 ----------EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 389 ENLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 436
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 207/437 (47%), Gaps = 98/437 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA-------------------------------LTMGGEREAAIA 146
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 147 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ------------ 190
Query: 238 QTQAQQPAAPAPTSG-----PNANP-------LDLFPQGLPNMGSNA------------- 272
QTQA+ P +P P G ANP ++LF
Sbjct: 191 QTQARAPNSPTPAGGNTGATAQANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGAG 250
Query: 273 ----GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRL 324
A +LDFLRN+ QFQ LR +VQ PQ ILQ++G NP L ++I + FL+L
Sbjct: 251 AGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQL 310
Query: 325 INEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 381
+ E + + +P QA++VT EEREAIERL +GF+R LV++ +FAC+KN
Sbjct: 311 LAEDADED---------APLPPGAQAISVTEEEREAIERLCRLGFERDLVIQAYFACDKN 361
Query: 382 EELAANYLLDHMHEFED 398
EELAAN+L D + +D
Sbjct: 362 EELAANFLFDQPDDADD 378
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 90/113 (79%), Gaps = 6/113 (5%)
Query: 292 MVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMP 345
MV +NPQILQ ELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 61 HSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 113
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 196/438 (44%), Gaps = 83/438 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++ E+ V V++ + + +++ A + A A Q+ + ++ P A
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATATAGQSHPATAASAGAGAPARGPALPA-A 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP----------------------------APAPV 152
P S A PAPA A A A A
Sbjct: 120 PATST------RATPAPASVSASGTASAQPAPAGAPQAAGQQAGPPGSPSPTPDDAIAGP 173
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
SS + QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 174 SSRAQPSEQAARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLM 230
Query: 213 GIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 267
G+P A PP A +S G ++ A + A TSG +P
Sbjct: 231 GLPGDRASAAEVEPPQAGSSGAG-------RSSAVEADAGTATSGSGGHP---------- 273
Query: 268 MGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLR 323
LDFL N +FQ LR ++Q + P++LQ + +NP L+ ++Q R
Sbjct: 274 ---------LDFLLNHPEFQQLRQIIQHDPSLLPEVLQGIRPRNPQLLAQFSQYQGYLSR 324
Query: 324 LINEPVEGGEGNVL----------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 373
++ PVE G + A A + +TP E AIERL+A+GF LV+E
Sbjct: 325 MLTAPVEEAGGERRGGEGVDSVGTAEAARADGSYIKITPRELAAIERLKALGFPEGLVVE 384
Query: 374 VFFACNKNEELAANYLLD 391
+FAC KNEE AAN+LL+
Sbjct: 385 AYFACEKNEEWAANFLLE 402
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 191/411 (46%), Gaps = 78/411 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQTPAPT 118
+ E FVV M+ K K +++ A+ S+ PP Q +T
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTST-------- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A PPA P P + A P S L GS +
Sbjct: 110 ---------QAAPPATPTPNRS-AGTP------------------SGLAMGSERAEAIAN 141
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE Q NPP
Sbjct: 142 MEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESVQ------QEQQQQRANPPQA 192
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQ----------GLPNMGSNAGAGTLDFLRNSQQFQA 288
A G N DL Q + G LDFLR++ QFQ
Sbjct: 193 ASTAAAPAADDDGG--VNLFDLAAQRRGAPASGGAPAAAAAAQNDLGNLDFLRHNAQFQQ 250
Query: 289 LRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 344
LR +VQ PQ ILQ+LG NP L +LI + FL+L+ E E +
Sbjct: 251 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAEDD---------VPL 301
Query: 345 P---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 302 PPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 352
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 43/212 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV EN F VVML+K+ ++ + N + Q +
Sbjct: 61 DNKVLENEFFVVMLSKT------SNILKQGLCNLSMRAFFCVKYLNQHS----------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A S +V NLVAG NLE+ Q+IL
Sbjct: 104 -----------------------GIGKGTAHFQSSRNV---CCFNLVAGINLESKAQEIL 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
D+GGGSWD +TV+ ALRAA NN ERA+EYL S
Sbjct: 138 DIGGGSWDFDTVVHALRAASNNVERALEYLSS 169
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 209/429 (48%), Gaps = 75/429 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA----PANQAQTTSSAPPTSTQPTTTSQTPA 116
+ E F+V M++K K + S ++ S+ PA A +T +AP + PTT+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTPAPVAASTPTAPAPRSNPTTSDAPAT 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
P+ A P + P P S L+ G E +
Sbjct: 118 PSPAAPAAAPAVGGAATFNDP--------------------------SALLMGPQGEQVI 151
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
Q+ MG + R + RA+RAA+ NP+RA+EYL +GI P ++A A PP
Sbjct: 152 AQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGI------PETSQAEQREAAPAPP 202
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQ----GLPNMGS-------------------NAG 273
A T AAPA + ++LF G P G+
Sbjct: 203 ATTAPTGGAAPAAAATEGDEHVNLFEAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGGS 262
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV 329
G LDFLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E +
Sbjct: 263 LGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDI 322
Query: 330 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L
Sbjct: 323 DDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFL 376
Query: 390 LDHMHEFED 398
+ E +D
Sbjct: 377 FEQPDEGDD 385
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 187/400 (46%), Gaps = 98/400 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P + P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTATPESSTSFP---SAPASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E +AP +P P+ DV AA + V GS E + +I+ M
Sbjct: 122 KSPSEE----SAPTTSPESVSGSVPSSGSSGREEDV-AFAAPSTVTGSEYETMLTEIMSM 176
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 177 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 223
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QP+ A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 224 QPSTEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 260
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI 358
+LQ+LG++NP L+
Sbjct: 261 LLQQLGQENPQLL----------------------------------------------- 273
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 274 -QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 310
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 198/402 (49%), Gaps = 78/402 (19%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
VK+ I T +G +PASQQ LI+ GK+L+D T+E + E F+V M++K K + S ++
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
S+ A + + S APT A SAP PA P+P
Sbjct: 68 ASSSQTPAAAPSAPAPITPS----------APTRA-------SAPASETPA-----TPSP 105
Query: 146 APAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 205
A + ++ +D S L+ G+ + + Q+L MG + R + RA+RAAY NP+R
Sbjct: 106 AGGASSGATFND-----PSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPDR 157
Query: 206 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 265
A+EYL +GIPE++ + +A + P+ L+LF Q
Sbjct: 158 AIEYLLNGIPEESEREAPSAPAA-------AGGAARPSTTSEEPSDAQVQESLNLFEQAA 210
Query: 266 PNMGSNA----------------------GAGTLDFLRNSQQFQALRTMVQANPQ----I 299
G+L+FLRN+ FQ LR +VQ PQ I
Sbjct: 211 AQASGGGGARGRGAGAGAGAGAGAGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEPI 270
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEERE 356
LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT EER+
Sbjct: 271 LQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVTEEERD 321
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AIERL +GF R V++ +FAC+KNEELAAN+L D E E+
Sbjct: 322 AIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENEE 363
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 204/410 (49%), Gaps = 57/410 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+++ +FVVVM TK K +++ +A ++APP +
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG--------TTAPPALDPGPDPCRRHRLRPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP PE+ P P P + SS +++ +A SNLV G + E+ V +I+
Sbjct: 113 PPPPRPENRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ ALRA++NNP+RAVEYL TA P A A+ A PA T
Sbjct: 173 LMG---YEREQVVAALRASFNNPDRAVEYLL------TAAGPAAEATPASSAPAAPAGT- 222
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
+PA G NP L FLRN QFQ +R ++Q N
Sbjct: 223 ----GSPAGAEG--VNP-------------------LSFLRNQPQFQQMRQLIQQNAALL 257
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFL-------RLINEPVEGGEGNVLGQLASAMP-QAV 348
P +LQE+G++NP L+R+ +T LI + G A P + +
Sbjct: 258 PTLLQEIGRENPELLRVTLAARTQRCSASTSAPHLIFXXXGATAAGMAGGTAGENPMRYI 317
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
VT +E+EAIERL+ +GF LV++ FFAC KNE LAAN+LL F+D
Sbjct: 318 QVTAQEKEAIERLKELGFPEGLVIQAFFACEKNENLAANFLLQ--QNFDD 365
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 180/412 (43%), Gaps = 116/412 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ +K
Sbjct: 59 DYPDIKDGDKVIVIASKV------------------------------------------ 76
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
V SAP P A P P AP S VY +S L+ G L+ V +I
Sbjct: 77 -----VESSAPQPVAKVEEKTPESTPVQQEAPEKS-EPVYDNPSSKLLIGQELQDNVNRI 130
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 238
+MG ++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 131 CEMG---FERAMVERAMAAAFNNPERAVEFLSTGHIPE---------------------- 165
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-----GAGTLDFLRNSQQFQALRTMV 293
P A +DL P+M + + L++ F+ LR +V
Sbjct: 166 --------------PEAMGMDL-----PSMEHSGDMPRTNEDVIQMLQSHPMFEQLRQVV 206
Query: 294 QANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ--------LA 341
Q++PQ+LQ+L G+ NP L++ I EHQ +F+ LI+ G E G
Sbjct: 207 QSDPQMLQQLLDNIGRNNPELLQSIIEHQDEFMDLISS---GAEVEPFGMPLERPDSVND 263
Query: 342 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
P +++T E E+++RLEA+GF R V+E F AC+KNE+LAANYLL+H
Sbjct: 264 ENNPNIISLTESEMESVQRLEALGFPRPAVIEAFLACDKNEQLAANYLLEHF 315
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 159/331 (48%), Gaps = 75/331 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + EN F+VVM++K+K S + TS+ P T+T T T P P+ +
Sbjct: 58 EYNIKENDFIVVMVSKAKGS---------------RPTSALPSTATAQTPTVPPPVPSTS 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S S P + + P A + S+ +AA+ V Q+
Sbjct: 103 AVSSSETSTPLSVSSSTRPTTEGTMASGSSGTSTTPSSTAEAAN-----------VGQLC 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG + E V L+AA+ NP+RAVEYL +GIPE P
Sbjct: 152 DMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNP------------------- 189
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN---- 296
AA APT+G AG+L+ LRN QF + R +V+ N
Sbjct: 190 --TSAAAAPTTG------------------GPSAGSLEQLRNHPQFASFREVVRTNPAAL 229
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFLRLINE 327
P +LQ++G QNP L+RLI E+Q+ FL+++NE
Sbjct: 230 PALLQQIGGQNPELLRLIHENQSQFLQMLNE 260
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 138/411 (33%), Positives = 191/411 (46%), Gaps = 39/411 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F +EV+P +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K+ + SS NQ + P T + A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCF----NQTGRLTYLQPKEKPAPTAESSAAAAPP 113
Query: 121 PPQSVPESAPP--PAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
+ P ++ P PAAPA + A P P S + G+ S L G+ +
Sbjct: 114 ATPAQPVASTPAVPAAPAQSSTTQSAAPATPTPQRS-GEAGGETGSGLAMGAERAEAITN 172
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-------- 230
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A
Sbjct: 173 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAAAGPTQAAPA 229
Query: 231 --QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
+ G AA A + + A LDFLR++ QFQ
Sbjct: 230 AQEGGEDDGGVNLFDLAAQAGGGRGGSGSGNAAAAAATATQGGADLSNLDFLRHNPQFQQ 289
Query: 289 LRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 344
LR +VQ PQ ILQ+LG NP L +LI + FL L+ E + +
Sbjct: 290 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD---------VPL 340
Query: 345 P---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 341 PPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 391
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 128/246 (52%), Gaps = 50/246 (20%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V +I+ MG + R+ V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 159 EQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVL---------ETQT 206
Query: 233 GNPPAQTQAQQPAAP---------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 283
P TQ++ A P NPL PQG G L FLR+
Sbjct: 207 AETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------GPLGFLRSQ 256
Query: 284 QQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--- 336
F +R +VQ+NP+ +LQ+LG+ NP L+ LI+ HQ++F+ L+NEP+ G+ +
Sbjct: 257 AVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFMELMNEPITEGQPRIAPY 316
Query: 337 ------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
++VT EE+EAI+RL+A+GFD LV++ +FAC+KNE L
Sbjct: 317 QQQQQQQQPSRQSPGGPGLGSLGISVTQEEKEAIDRLKALGFDEGLVVQAYFACDKNENL 376
Query: 385 AANYLL 390
AAN+LL
Sbjct: 377 AANFLL 382
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 136/241 (56%), Gaps = 47/241 (19%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
+A PP Q +++ P P P NPL+ FLR QF
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENPLE-------------------FLREQPQF 95
Query: 287 QALRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---LGQ 339
Q +R ++Q NP +L L G++NP L++ I +HQ F++++NEP+ G G++ +G
Sbjct: 96 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPL-GELGDLEGEMGA 154
Query: 340 LASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 155 IGDESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 212
Query: 398 D 398
D
Sbjct: 213 D 213
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 173/343 (50%), Gaps = 40/343 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E++FVV+M+TK+K + + A PA Q + A + + + TP T
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAP-EAKPAEQPTPSQPAATPAAASSEPAATPTET-- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA---PAPAPAPVSSVSDVYGQ--------AASNLVAG 169
P + P +PAPA A + +PA V+ + A S LV G
Sbjct: 117 -----PAAVDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTG 171
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
+ E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++ A
Sbjct: 172 ESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPEAPVAAPPA 228
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
P A Q AP + S AG L FLR++ QF+ +
Sbjct: 229 AGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLRSTPQFETM 275
Query: 290 RTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
R +VQ+NP LQE+ + NP L ++I E+Q F++++N+P
Sbjct: 276 RRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 318
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 212/428 (49%), Gaps = 75/428 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V +QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSF--VVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F +V K+ +++ AS+ A P+ TPAP
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAAAAASSSRAVPS---------------------TPAPV 96
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
A ++ P+APAP+ P APA + S S L G EA +
Sbjct: 97 AA------QTPAAPSAPAPSSNPQNAPATPSPAPAQASGERFNDPSALTMGGEREAAIAN 150
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A A PA
Sbjct: 151 MESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPAG 207
Query: 239 TQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGSNAGA--------GTL 277
A AP + P+ P++LF P G GS GA +L
Sbjct: 208 NTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSL 264
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
DFLRN+ QFQ LR +VQ PQ ILQ++G NP L ++I ++ FL+L+ E +
Sbjct: 265 DFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDADED- 323
Query: 334 GNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ +P QA++VT +EREAIERL +GF+R LV++ +FAC+KNEELAAN+L
Sbjct: 324 --------APLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYFACDKNEELAANFLF 375
Query: 391 DHMHEFED 398
D + +D
Sbjct: 376 DQPDDADD 383
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 204/412 (49%), Gaps = 67/412 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + + +S+ + AP+ A T++ P P +S T V
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAV- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P+PA A P+ P+ + L G+ A QI
Sbjct: 117 -----------PATPSPAGASVPSVQATPS----------NETTGLAMGAERSA---QIA 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+M ++R + A+RAA+ N ERA+EYL +GIPE + + P A
Sbjct: 153 EMEAMGFERSQIDLAMRAAFFNSERAIEYLLTGIPEN-----LLQEQRQAAPAAPAAGQA 207
Query: 241 AQQPAAPAPTSGPNANPLDLF-------------PQGLPNMGSNAGAGTLDFLRNSQQFQ 287
+ QPAA G P+DLF G G LDFLRN+ QFQ
Sbjct: 208 SSQPAA-----GGEDEPVDLFAAAANAGNRGGAARADNAAAPGGGGLGNLDFLRNNAQFQ 262
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LR +VQ PQ ILQ++G NP L LI +H FL+L++E + +
Sbjct: 263 QLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENADDD---------AP 313
Query: 344 MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+P QA+ V+ EER+AIERL +GF+R ++ +FAC+KNEELAAN+L +
Sbjct: 314 LPPGAQAIEVSGEERDAIERLCRLGFNRDQAIQAYFACDKNEELAANFLFEQ 365
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 88/113 (77%), Gaps = 6/113 (5%)
Query: 292 MVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMP 345
MVQANPQILQ ELGKQNP L+RLI E+Q +FLRLINE G + LGQLA P
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALGQLAGGYP 60
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q+V VTPEEREAIERLE MGF RALV+E F AC+KNE+LAANYLL++ +E++D
Sbjct: 61 QSVNVTPEEREAIERLEGMGFSRALVIEAFLACDKNEQLAANYLLENANEYDD 113
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 216/427 (50%), Gaps = 79/427 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS-QTPAPTV 119
+ E F+V M++K K TQP++ S TPA +V
Sbjct: 58 FYNIEEKGFIVCMVSKPK---------------------------TQPSSQSPSTPAKSV 90
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN----LVAGSNLEAT 175
+ P + P + P PA P+P SS + + N L+ GS E
Sbjct: 91 TSTPAPPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSALLTGSQSEEV 149
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS---------GIPEQTAVPPVARA 226
+ Q++ MG ++RE + RA+RAA+ NP+RA+EYL + GIPE R+
Sbjct: 150 INQMMSMG---FEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGIPENIQQEQQQRS 206
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLD 278
+A A A A AP TSG + P++LF GAG +LD
Sbjct: 207 AATTPA----APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLD 261
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FLRN FQ LR +VQ PQ ILQ++G+ NP + +LI +++ FL+L++E +
Sbjct: 262 FLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD---- 317
Query: 335 NVLGQLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+A+P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL +
Sbjct: 318 -------AALPPGTTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFE 370
Query: 392 HMHEFED 398
+ + +D
Sbjct: 371 NSDDGDD 377
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 197/413 (47%), Gaps = 54/413 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM K+ S++ V+A +T + T P+ ++T T
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAI-----KTAKPSEQTRASPSAAAETIKKTEE 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ-AASNLVAGSNL------- 172
P + PPPAA A A A A P++ ++ N++ +
Sbjct: 115 PKRQEKAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAAS 174
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQ 231
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQF 286
PT P+ NP+ G G L+FLR +F
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRF 266
Query: 287 QALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 342
+R +++ P++L +G+ NP L+ +I+EHQ DF+ ++NEP + G +
Sbjct: 267 IQMRRVIRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEPEDEGSEEAPSEGHE 326
Query: 343 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
A Q +++T EE AIERL A+GF R +VL+ + AC +NEE A++L HM +
Sbjct: 327 A--QEISLTEEESNAIERLVALGFPRQIVLQAYIACERNEEQTADFLCRHMED 377
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 192/403 (47%), Gaps = 51/403 (12%)
Query: 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63
+ LK F +EV+P D +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 64 VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ E FVV M+ K K + A+ + AP + TPA AP Q
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQP------------VTSTPAVPAAPNQ 793
Query: 124 S-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S +S PP P+P + + + G A+ L G+ A + + M
Sbjct: 794 SSANQSTAPPVTPSPNRS------------ADAAAPTGADAAGLTMGAERAAAITSMEAM 841
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++R + A+RAA+NNP+RAVEYL +GIP+ AR +A + PA A
Sbjct: 842 G---FERSQIEAAMRAAFNNPDRAVEYLLTGIPDNIQQEQQARQAAAAASAAAPAAPAAP 898
Query: 243 QPAAPAPTSGPNANPLDLFPQ----------GLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
Q N DL Q G++A G LDFLR + QFQ LR +
Sbjct: 899 QTTQTGGDEEGGINLFDLAAQHGGTGGSRGSSGDAGGASADLGNLDFLRTNPQFQQLRQV 958
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 348
VQ PQ ILQ+LG NP L +LI + FL L+ E E G QA+
Sbjct: 959 VQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLHLLGEDAEDDVPLPPGA------QAI 1012
Query: 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 1013 SVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFD 1055
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 201/416 (48%), Gaps = 63/416 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V M++K K ++G + A A A ++ AP Q P+ PT
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPARAAPAATPSAPAPAPPASTAAVPQVPSTPTP 116
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + S PA P S L G+ EA + Q+
Sbjct: 117 ASSGAAAASGEAPAFNDP--------------------------SALAMGTQGEAVISQM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG + R + RA+RAA+ NP+RAV+YL +GIPE A A A +P A T
Sbjct: 151 EAMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPENIEQ---EHAQARAAAASPSAAT 204
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA----------GTLDFLRNSQQFQAL 289
A +P++LF G+ G LDFLRN+ FQ L
Sbjct: 205 TPAAAVAAVAPEATGDDPVNLFEAAAQAGGATGRGAAGAGDAGTLGNLDFLRNNPHFQQL 264
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 345
R +VQ PQ ILQ++G NP L +LI ++Q FL+L+ E + G EG +P
Sbjct: 265 RQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDL-GDEGE--------LP 315
Query: 346 ---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E ED
Sbjct: 316 PGAHEIRVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFEQPDEGED 371
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 128/241 (53%), Gaps = 46/241 (19%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 228
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
PP P +PA + + +G L+FLRN QFQ
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEFLRNQPQFQQ 97
Query: 289 LRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-------- 336
+R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 98 MRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGG 157
Query: 337 -------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 158 GGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 217
Query: 390 L 390
L
Sbjct: 218 L 218
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 197/405 (48%), Gaps = 47/405 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KT + F+IE+ D ++ +K I+ QG +P + Q +I+ GK+L + T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M++K K + + ++ S+AP + Q +S P P ++S V+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQD-VQMDTSPPAPPAAPPSSSTPAPVLVS 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
SV + PA PA +V+ +G S ++G L++ + +
Sbjct: 117 DTTSVTQPT------------TPAATPAATAPPAVAPAFGDM-STFLSGEALQSAITNMT 163
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + R+ V+RA+RA+YNN +RAVEYL +GIP PA
Sbjct: 164 EMG---FPRDQVLRAMRASYNNADRAVEYLMTGIPAHLEAEAAGPTPPTAAPATQPAAAA 220
Query: 241 AQQPAAPAPTSGPNANPLDLF----------PQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
P P P +LF G N L+ LR++ Q Q LR
Sbjct: 221 PISANVPPPN-----QPQNLFQATGGVGPAAAGGAAGAPQNPVHLNLEALRDNPQIQQLR 275
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 346
+ +PQ ++Q+L QNP + +++ ++ +L+ G L +
Sbjct: 276 QQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL--------GVELDEEVPPGAH 327
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
V+VT EER+AIERLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 328 VVSVTAEERDAIERLEALGFPRQAVLEAYFACDKNEELAANYLFE 372
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 83/406 (20%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAP 121
++ E F+VVM++K K QP T + A P
Sbjct: 60 LQIKEKDFLVVMVSKPK---------------------------PQPATPKKDEAKVEQP 92
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILD 181
Q +S P P PA + P+ Q +NL GS LE V +++
Sbjct: 93 AQ---KSEQPEQPEQPQQTQQPASSSTPS----------QPGNNLAMGSELETAVSNMVE 139
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG +DR V++A+RA++NNPERAVEYL +GIP+ P + P T A
Sbjct: 140 MG---FDRAQVMKAMRASFNNPERAVEYLMTGIPQHLQQPEQSEQPQQQSEQQPNQPTGA 196
Query: 242 QQPAAPAPTSGPNANPLDLFP----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA-- 295
PL+LF Q P G A G + QQ Q L +VQA
Sbjct: 197 ---------------PLNLFDAARQQSSPAAGQAAPGG------DGQQAQ-LAELVQAAQ 234
Query: 296 -NPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 350
NP +LQ E+ + NP L +L+ ++ L L++ EG EG+ Q Q + +
Sbjct: 235 ENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDLLSG--EGAEGDF--QDEDGPGQVIHL 290
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
T E+ EA+ RLEA+GF R + + AC NEELAANYL + +
Sbjct: 291 TEEQAEAVARLEALGFSREMSAQALLACEGNEELAANYLFEQQEDL 336
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 198/428 (46%), Gaps = 77/428 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------------- 47
MKV + LK F +EV+P D +S VK+ I T +G D P Q+++
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD--PKHQKLIYSGADEQNPAPTAP 58
Query: 48 -----HQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
GK+LKD T+ + E FVV M+ K K + A+ +AAP +
Sbjct: 59 PFLTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQG- 117
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPE-SAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
TPA AP QS +A PA P P + A APA G
Sbjct: 118 -----------TPAAPAAPNQSSASLTANIPATPTPNRS---TDATAPA---------GG 154
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
++ L G+ A + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 155 DSAGLTMGTERAAAITSMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIQQE 211
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ----------GLPNMGSN 271
AR +A A Q G + N DL Q +
Sbjct: 212 QQARQAAAAAPA---APAAPQTTQTGGDEEGGSVNLFDLAAQHGGSGGSRGGSGDAAAAA 268
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
A G LDFLR + QFQ LR +VQ PQ ILQ+LG NP L +LI + FL+L+ E
Sbjct: 269 ADLGNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLGE 328
Query: 328 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
E +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEEL
Sbjct: 329 DAEDD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEEL 379
Query: 385 AANYLLDH 392
AAN+L D
Sbjct: 380 AANFLFDQ 387
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 205/416 (49%), Gaps = 40/416 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++V +K L+ F +E++P + D+K+ IE+ QG + + Q +I GKVL D T+
Sbjct: 31 VRVTLKNLQQKTFTLELEPSQTILDLKQKIESDQG---HAVALQKIIFSGKVLADDKTIG 87
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F +V++ +S+ + + A+ ++SAP + P T + A
Sbjct: 88 DCNIKEKDF-MVLMVNKPKASAAPAVANLPAASAPAASASAPAPTATPATATPASAAAPE 146
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + ++ P A A A A + AP +S + + G+ LEA++ +++
Sbjct: 147 PTAAASTASAPATPAATASADATTASAETAPAAS------DDPTAFLTGARLEASIAEMV 200
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP---VARASAGGQAGNPPA 237
MG + RE RA+RA+YNNP RAVEYL +GIP + P V A+ G
Sbjct: 201 SMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRAVPAATTGATPAAATT 257
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNMGSNAGAGTLDFLR 281
T+ A + P++LF + AG LD LR
Sbjct: 258 TTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAARPGATEAG---LDALR 314
Query: 282 NSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNV 336
F+ LRT+VQ NP + LQ+L + NP L+ +IQ++Q FL+ + E EG G+
Sbjct: 315 REPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFLQFLGEGAEGEGDFGF 374
Query: 337 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
G Q V V+ +E +AI+RL +GFDR V++ F AC++NEE+AAN+L ++
Sbjct: 375 EGDDGQEGMQHVQVSADEAQAIDRLCELGFDRQNVIQAFLACDRNEEMAANFLFEN 430
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 190/413 (46%), Gaps = 89/413 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+EE ++ E F+V+M+TK KV + + +T S TPA
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKP---------EPTPAAPAAAASTESSTPAE 111
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
+ + + + P A A AP +NL+A E+ V+
Sbjct: 112 STSSTDATTTPSQPVATEAAAPV-------------------NPHVANLMAMGFPESQVK 152
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
Q AL AA+NNPERAVEYL +GIPE+ +A+ + +A A
Sbjct: 153 Q----------------ALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAASA 192
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
T A AAP T+ S + TL+ +RN QFQ +RT+++ NP
Sbjct: 193 GTTADASAAPTVTA-----------------PSRSVGSTLEQIRNEPQFQQIRTLIRNNP 235
Query: 298 QIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------------GEGNVL 337
Q+L Q+L +NP I +Q +F+ +INEP E G+G +
Sbjct: 236 QLLSQFIQQLQIENPEAFAAISANQQEFINMINEPGEAQPAGDDSAEAAAPATPGDGPRV 295
Query: 338 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
Q + +T E+R +IERL+ +GF VL+ FFAC+KNE AAN+LL
Sbjct: 296 RQTEDGRVM-LEITAEDRASIERLKELGFPEQAVLQAFFACDKNENDAANFLL 347
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 192/435 (44%), Gaps = 88/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V P+D + D+KK +E V P+ +Q LI GK+LKD
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLAD--MPSDKQKLIFSGKILKD----- 53
Query: 61 ENK----VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E+K + +N V+VM+T+ ++ + N+ + + +
Sbjct: 54 EDKATDILKDNDTVIVMVTRRIINKNN----QKEDINKESLSKIENNNNNNNNKSDDNIN 109
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
T + + E+ ++ + + A S L+ G L+ ++
Sbjct: 110 VTTSNTEEQKENKENKNDNTN---------------DNIYNSFNNAESMLLTGDKLKESI 154
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
I MG +++E V +A+ AYNNP RA++YL +G P + V +
Sbjct: 155 DNICAMG---FEKEQVKKAMILAYNNPNRAIDYLTNGFPNENVNVNVNENINNESNFSNL 211
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++ P +S P + SN RNS F A+R M +N
Sbjct: 212 LNSE-NNPLLEENSSHP--------------LSSNEET-----FRNSTFFNAIRDMALSN 251
Query: 297 PQ----ILQELGKQNPHLMRLIQEHQTDFL-------RLINEPVEGGEGNV--------- 336
PQ +LQ +G+ +P + I+++QT+FL IN+ E + N+
Sbjct: 252 PQRLPELLQMIGRTDPSFLEYIRQNQTEFLAALQNYGNNINDHEEHSDDNLDNADDENAI 311
Query: 337 --------LGQLASAMPQA----VTVTP---EEREAIERLEAMGFDRALVLEVFFACNKN 381
+GQ + P + +TP E E+I++LE++GF + + LE F AC+KN
Sbjct: 312 QNDSFLQDVGQQVLSDPNNENINIPITPLNENEMESIKKLESLGFPKHVALEAFIACDKN 371
Query: 382 EELAANYLLDHMHEF 396
EE+AANYL ++M++F
Sbjct: 372 EEMAANYLFENMNDF 386
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 206/437 (47%), Gaps = 63/437 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP--TTTSQTPAPT 118
E ++ E ++ M++K K STV+ A + A P TT S + P
Sbjct: 59 ECQLKEGDQIIFMISKKK------STVTKVTEPPAAAAAQAQAPGANPEITTASNSATPG 112
Query: 119 V---APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDV-YGQAASNLVAGSNLEA 174
+ A PE P A A A A AP ++ + +++ V G+
Sbjct: 113 LIETAAASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNE 172
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE + QA
Sbjct: 173 TVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA-- 227
Query: 235 PPAQTQAQQPAAPAPTSGPNANPL------DLFPQ---GLPNMGS-------NAGAGTLD 278
Q A + +A A +G +A+ DLF Q G N GS + G GT
Sbjct: 228 -SPQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGSAVGGSTGEGTPG 286
Query: 279 FLRNS-QQFQALRTMVQANPQI--------------LQELGKQNPH-LMRLIQEHQTDFL 322
+ + Q +LR V +P+ L+E NP + ++ E D L
Sbjct: 287 SIGLTIQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEAVGDNL 346
Query: 323 RLINE---------PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 373
+ + + G+ + +G+ ASA P + +TPE+ +AI RL +GF+R+LV++
Sbjct: 347 QSLEGLGDIGGDLGEINEGDNDTMGE-ASAAPPTIQLTPEDEQAISRLCELGFERSLVIQ 405
Query: 374 VFFACNKNEELAANYLL 390
V+FAC+KNEE+AAN L
Sbjct: 406 VYFACDKNEEIAANMLF 422
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 207/422 (49%), Gaps = 60/422 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE++P + ++ VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+ +A+P+ A+ ++ A + + + A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + P PAA A P A + SV +A +N+ A
Sbjct: 118 ---AAVAATPSPAARAAGPTAGGATSYTDPNSFSVGPALQEAITNMEA------------ 162
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYS--GIPEQTAVPPVARASAGGQAGNPPAQ 238
MG ++R + A+RAAYNNP+RAVEYL + GIP+ PP A + A
Sbjct: 163 -MG---FERSQISAAMRAAYNNPDRAVEYLLTLQGIPDNLQPPPAAAGAGAESEAAAAAP 218
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------------GAGTL 277
A PAA + N DL Q GS G G L
Sbjct: 219 AAAAAPAAGIEEHPESVNLFDLAAQHGQGGGSRGAAAQPSADSAAAAAAAAAGSQGLGNL 278
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 333
DFLR++ QFQ LR +VQ PQ ILQ+LG NP L +LI ++ FL L++E +G E
Sbjct: 279 DFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--DGDE 336
Query: 334 GNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 337 DD------APLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLF 390
Query: 391 DH 392
D
Sbjct: 391 DQ 392
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 130/234 (55%), Gaps = 42/234 (17%)
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 229
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 1 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 57
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 58 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 96
Query: 290 RTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--------- 336
R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+ G
Sbjct: 97 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 156
Query: 337 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 157 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 210
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 187/401 (46%), Gaps = 70/401 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV EN ++ ML + P N S++ TT + AP +A
Sbjct: 58 AFKVKENDVIIFMLP--------SVFKKEEPKNLENRIDKTSTESSKTTTIA---APGIA 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P PV++ AS G++ E ++ I+
Sbjct: 107 VP--------------------------PVPVNTSGSF---NASTFAVGNDRENAIRNIM 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DR V ALRAA+NNP+RAVEYL +G+P P AG ++ ++Q
Sbjct: 138 EMG---YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPI-----AGSRSAPNDGRSQ 189
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT--MVQANPQ 298
TS A DLF + A +G N+Q+ ++ ++Q NP+
Sbjct: 190 PVSSTGVESTSTETAPGTDLFE-----AAAVASSGQQQ-RENTQRDDLMQIGELIQNNPE 243
Query: 299 I----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
+ LQ++ NP L LIQ++ +F+R + +EG G G+L Q + V PEE
Sbjct: 244 MVEPFLQQIASSNPQLAELIQQNPEEFMRAL---MEGDNGE--GELEDEGVQ-IQVAPEE 297
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DHMH 394
AI RL +GFDR LV++V+FAC+KNEE+ A+ L +H+
Sbjct: 298 EAAINRLCELGFDRNLVVQVYFACDKNEEMTADLLFSEHID 338
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 193/437 (44%), Gaps = 102/437 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K IE+ + +S K+ I + D ASQ LI+ GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E V+ M++K+K + T S ++ P +Q T +++T
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADVKVTES----------TTEPQDESQATASAET------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+A A APA A + + G ++ V GS TV +I+
Sbjct: 102 ------------SAVANAPAEATTTGTRTGTTAVTQE-EGTTDASFVTGSQRNETVNRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG +DRE V RALRAA+NNP+RAVEYL GIPE + P+Q Q
Sbjct: 149 EMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE----------------ASEPSQQQ 189
Query: 241 AQQPAAPAPTSGPNANPL--------------DLFPQGLPNMG-----SNAG-----AGT 276
A+ A +G NAN +LF Q N G S AG GT
Sbjct: 190 AE---AVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLGGEEMGT 246
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 329
+ + LR +V P+ + + L + PHL + + F+ L+ E V
Sbjct: 247 IGL--TMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLLEAVGGS 304
Query: 330 --------------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 375
EG G+ GQ A P VT++ E+ EAI RL +GF+R LV++++
Sbjct: 305 LTDSLGENLGDDIAEGDLGDFGGQTQGAPPN-VTISAEDEEAINRLCELGFERTLVVQIY 363
Query: 376 FACNKNEELAANYLLDH 392
FAC+KNEE+AAN L ++
Sbjct: 364 FACDKNEEIAANMLFNN 380
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 194/423 (45%), Gaps = 80/423 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTL 59
MKV + LK F +EV+P D +S VK+ I +G D P Q+++ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 EENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
+ E FVV M+ K K ++ ++ A Q ++ A P + +T+Q+
Sbjct: 59 ASYNIEEKGFVVCMVNKPKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPSTTQSA 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
AP PQ E+ G+ S L G+
Sbjct: 119 APATPTPQRSGEAG------------------------------GETGSGLAMGAERAEA 148
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ + MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A AG
Sbjct: 149 ITNMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAA--AGPT 203
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------------GTLD 278
A A G N DL Q +G+ G LD
Sbjct: 204 QATPAAPAAQEGGEDDG-GVNLFDLAAQAGGGGRGGSGSGSAAAAAAGATQGGADLGNLD 262
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FLR++ QFQ LR +VQ PQ ILQ+LG NP L +LI + FL L+ E +
Sbjct: 263 FLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESAD---- 318
Query: 335 NVLGQLASAMP-----QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 319 -------DDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 371
Query: 390 LDH 392
D
Sbjct: 372 FDQ 374
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 199/419 (47%), Gaps = 67/419 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G D P Q+ LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + +S+ P T QP + TPA A
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAA----------ESSAPPATPAQPI--ANTPAAPAA 105
Query: 121 PPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P QS A PA P P + A + AP+ P S L G+ + +
Sbjct: 106 PVQSTSHQAAVPATPTPQRSVEAGSGAPSNEP------------SGLAMGAQRAEAIANM 153
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
MG ++R + A+RAA+NNP+RAVEYL +GIPE + A +
Sbjct: 154 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIRQEQQQQQQQQHHAASGGQAP 210
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-------------------GTLDFL 280
AQ A G + N DL Q + +G G LDFL
Sbjct: 211 AAQPAAHGGDEGG-SVNLFDLAAQRGGSGRGGSGGNQAAAAAAAAAAAGQGGDLGNLDFL 269
Query: 281 RNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 336
R++ QFQ LR +VQ PQ ILQ+LG NP L LI + FL+L+ E +
Sbjct: 270 RHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDADDD---- 325
Query: 337 LGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 326 -----VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 379
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 163/330 (49%), Gaps = 51/330 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAPE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQ 298
QPA A AG L+FLR+ QFQ +R ++Q N P
Sbjct: 221 QPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPA 257
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEP 328
+LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 258 LLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 170/365 (46%), Gaps = 53/365 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST-----VSAAPANQAQTTSSAP------------ 102
KV E F+VVMLT+ V+ SG+ T V++A Q T++ P
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ- 161
PTS T +S+ E P + A A A A S D+ G+
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVE---PASTAAVAGAARATDVDVTASDYSSIDLVGEL 176
Query: 162 --------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +G
Sbjct: 177 ANASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITG 233
Query: 214 IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
IP++ ++ Q Q S ++ +++
Sbjct: 234 IPQEESLFNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDSS 278
Query: 274 AGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV 329
A +FLR+ QF +R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P+
Sbjct: 279 ADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPL 338
Query: 330 EGGEG 334
EG G
Sbjct: 339 EGEVG 343
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 37/43 (86%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ +TP++++AIERL+A+GF LVL+ +FAC K+EELAAN+LL
Sbjct: 422 IRLTPQDQDAIERLKALGFPETLVLQAYFACEKDEELAANFLL 464
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 194/401 (48%), Gaps = 83/401 (20%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K K
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPK--- 59
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
AP ++ P+ TP+ A + P + P AAP+ P
Sbjct: 60 -------------------APSSAATPSQAPSTPSRAAASTPAAPSAPAPSAAPSAPAVP 100
Query: 142 APAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 201
A APA + + S L++GS EA + Q+ MG + R + RA+RAA+
Sbjct: 101 ATPSPAAPAQAPADASAAFNDPSALLSGSQSEAVISQMESMG---FPRSDINRAMRAAFF 157
Query: 202 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 261
NP+RA+EYL +GIP+ + + A + AP+S P++LF
Sbjct: 158 NPDRAIEYLLNGIPDN-----IQQEQQQQAAAAAAPPAPSAPSGESAPSSTGGDEPVNLF 212
Query: 262 P-----------------------QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+GLPN LDFLRN+ FQ LR +VQ PQ
Sbjct: 213 EAAAQAGTGEGTGRGARAGAAGAGEGLPN---------LDFLRNNPHFQQLRQLVQQQPQ 263
Query: 299 ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVT 351
ILQ++ NP + +LI +++ FL+L++E +G A+P A++VT
Sbjct: 264 MLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG-----------ALPPGTHAISVT 312
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 313 EEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 353
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 131/417 (31%), Positives = 187/417 (44%), Gaps = 110/417 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-----YPASQQM-LIHQGKVLK 54
MKV VK++ G +FE+E+ V D+KK I V+ DV +S+ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D +QT SS P +
Sbjct: 61 D---------------------------------------SQTISSLGP---------KI 72
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
+ PP+ V + P PA V+S G + ++ G +LEA
Sbjct: 73 SFFVMMPPEGVTLKKVEVSKPQDQPA-----------VTS-----GLQNNTILMGEDLEA 116
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+V++I MG + V RALR A+NNP+RAVE LY+G + A+ Q
Sbjct: 117 SVREICGMG---FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPAE 167
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTM 292
Q Q P AP+ S P +D L S AGAG L+ LR QF +R
Sbjct: 168 QQQQQQGASPEAPSHGSMPLRFNMD----ALAVNASEAGAGGNQLEMLRRDPQFAFVRHC 223
Query: 293 VQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ-- 346
VQ+ P +L EL G+ NP L+ I ++Q +F+R++NEP G N PQ
Sbjct: 224 VQSQPSLLPELLLQIGRVNPSLLATINQNQAEFVRIVNEP---GMQN---------PQEP 271
Query: 347 ---AVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
+ +T EE + +ERLE MG DR VLE + AC+K+E+LAANYLL+++ +
Sbjct: 272 SQHTIQLTREELDQVERLEQLVVPMGLDRQAVLEAWLACDKDEQLAANYLLNNLEDI 328
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 196/431 (45%), Gaps = 86/431 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT--SSAPPTSTQPTTTSQTPAPT 118
+ + V+ M++ K +++ T S+AP Q++ T S P TSTQP T
Sbjct: 59 SCNFKDGNEVIFMVSAKKATATKV-TESSAPKAQSEETPSESTPATSTQPETNQNETTE- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
PA + AP + D + V GS AT+++
Sbjct: 117 --------------------PATNSSSENTEAPNAGTDDGF-------VVGSERNATIER 149
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I++MG ++R V RALRAA+NNP+RAVEYL GIPE T P Q G +
Sbjct: 150 IMEMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE-TLRP---------QEGQTSQE 196
Query: 239 TQAQQPAAPAPTSGPNANP---LDLFPQG-----LPNMGSNAGAGTLDFLRNS------- 283
+A ++ NA P DLF Q P+ AG T + ++
Sbjct: 197 HEADVDMNEEESTEGNAEPPAEDDLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGS 256
Query: 284 -----QQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV----E 330
+ ALR +V NP+ +L+ L + P L I + F+ ++ E V +
Sbjct: 257 IGLTMEDLLALRQVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEAVGDNLQ 316
Query: 331 G---------GEGN-VLGQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
G GEG+ V G A A +T++PE+ +AI RL +GF+R LV++V+FAC+
Sbjct: 317 GAMDFEAIAEGEGDTVEGADGFAEENAPITLSPEDEQAISRLCELGFERTLVIQVYFACD 376
Query: 380 KNEELAANYLL 390
KNEE+AAN L
Sbjct: 377 KNEEIAANMLF 387
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 138/241 (57%), Gaps = 28/241 (11%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 222
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 223 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGT 276
+ AGGQ +PP Q+PA + S P +A P PQG L G + +
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNV 224
Query: 277 LDFLRNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG- 331
L L QFQALR VQ NP +LQE+G+ NP L++LI ++Q +F+ L+N+P +
Sbjct: 225 LQGLSQLPQFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPI 284
Query: 332 GEGNVL--GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
G G L G ++ + VT EEREAI+RL+A+GF V++ + AC+KNE LAAN L
Sbjct: 285 GSGQELPPGTVS------IQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLL 338
Query: 390 L 390
L
Sbjct: 339 L 339
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++FVVVM++K
Sbjct: 60 DYSIQESNFVVVMVSK 75
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 192/412 (46%), Gaps = 56/412 (13%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTK-----SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ F+V+M+TK V S + V + ++ +S +T S A
Sbjct: 65 DDKKFLVIMVTKPKAPPPPVGPSDPTIVETEETPAEEPAATTESSSQSTSTPSTESAAAA 124
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ + + + A PA AP SV G A S LV G V+ I
Sbjct: 125 GTNTTTTTTTTSSSQSSAASNTQSTPATQAAPGGSV----GSAESLLVMGEEFNRMVENI 180
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRA++NNP AV+YL GIP P Q
Sbjct: 181 MEMG---YERSQVERALRASFNNPYTAVQYLVDGIPPNLEEP-------AAQPAQGGDGG 230
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
+Q A + P+ +P L+FLR+ QF+ +R M+++NP +
Sbjct: 231 GEEQVVAEG-EADPDEDP-------------------LNFLRSQPQFEQMRQMIRSNPSL 270
Query: 300 L----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN---------VLGQLASAMP- 345
L +++G+ NP L+++IQ++Q F+R+ + G A P
Sbjct: 271 LDAFIRQIGQTNPQLLQVIQQNQEAFVRMTERRGQFWRWKHSGGSGNQGGDGSGGRAAPG 330
Query: 346 -QAVTVTPEEREAIERLEAMG-FDRALVLEVFFACNKNEELAANYLLDHMHE 395
A+ V+P++R+AIERL+A+G F +V++ +FAC KNE LAA +L +
Sbjct: 331 QNAILVSPQDRDAIERLKALGNFPEDVVIQAYFACEKNENLAAEFLFSQTWD 382
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 181/429 (42%), Gaps = 92/429 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +S + PA + TS+ +T+ T S TPA
Sbjct: 58 SFKIKEGDSIIFMISKAKKASP-----APGPAKAEEKTSTDASATTESTNASSTPAA--- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A+ A P A A G + EAT+Q I+
Sbjct: 110 ------------ASGASTNQQGSEPGSAFAQ-----------------GDDREATIQNIM 140
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAGGQAG 233
+MG ++R + ALRAA+NNP RAVEYL +GIPE Q+ P+ ++
Sbjct: 141 EMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTN---- 193
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL----------DFLRNS 283
T + G +LF G T D L
Sbjct: 194 ----TTNDHEEEHEHDHEGEEGQGENLFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGED 249
Query: 284 QQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG- 338
Q + LRT +Q NP+++Q +L NP + LIQ+ F+R G G+ +G
Sbjct: 250 NQMRLLRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LGSGDDMGF 304
Query: 339 ------------QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
P+ V + T ++ AI RL +GFDR LV++V+ AC+KNEE+
Sbjct: 305 DFEEGEGEGVEGAGQGNEPETVRIALTEQDESAINRLCELGFDRNLVIQVYMACDKNEEV 364
Query: 385 AANYLLDHM 393
AA+ L M
Sbjct: 365 AADILFRDM 373
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 193/409 (47%), Gaps = 68/409 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P D++S VK+ I +G + Q LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K P + AP
Sbjct: 58 SYNIEEKGFVVCMVNK--------------------------PRPAAAAAPAAAAAPPAT 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA-TVQQI 179
P Q VP + PA P PAP+ + AP P + + ++ S V+G + A + I
Sbjct: 92 PAQRVPST---PAVP---PAPSQTSSQAPPPATPTPNRSVESPSGGVSGLAMGAERAEAI 145
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+M ++R + A+RAA+NNP+RAVEYL +GIPE RAS
Sbjct: 146 ANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIPENIQQEQQQRASQ-------QQAA 198
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQ---------GLPNMGSNAGAGTLDFLRNSQQFQALR 290
A AAPA N DL Q G LDFLR++ QFQ LR
Sbjct: 199 AAAPTAAPAADDDGGVNLFDLAAQRRGGGASDAPAAAGAGQGDLGNLDFLRHNAQFQQLR 258
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP- 345
+VQ PQ ILQ+LG NP L +LI + FL+L+ E + +P
Sbjct: 259 QVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDADDD---------VPLPP 309
Query: 346 --QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 310 GAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 358
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 182/408 (44%), Gaps = 88/408 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ + F+V M+TK K S + +A T++ QPT P VA
Sbjct: 61 EYKIEDGKFIVAMVTKPK--SVSPPAPTPPEPTEAAVTTTTSTQEEQPTN-----QPAVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ + +PA A + +P VS QA S LV G V I+
Sbjct: 114 ------------STTSSSPAEEQASSASPLNVS-------QAESTLVTGEAYNELVTSIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE V+ AL A++ NP+RAVEYL SG + G A PP Q
Sbjct: 155 AMG---FERERVVAALNASFCNPDRAVEYLMSG------------TTNVGTA--PPQQQP 197
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
P AP S N + L ++ + Q + +Q NP +
Sbjct: 198 DTIPTENAPISDSNV---------------------FNDLMDNPEIQVMAQQIQQNPHLL 236
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINE-----------PVEGGEGNVLGQLASAMP 345
LQ++ + NP L ++ H +F+ + P G G V
Sbjct: 237 QPYLQQIEQSNPSLFNMVSSHPEEFVSFLTTLRRGTSQTQPPPASAGAGGV--------- 287
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
V VT E++ IE+L+++GF + ++ + AC+KN ++AAN+LL +
Sbjct: 288 SYVRVTAGEQQDIEQLKSLGFSESECVQAYMACDKNLDMAANFLLSDI 335
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 137/288 (47%), Gaps = 66/288 (22%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
+SVS A S L+ G + VQ I+DMG + R+ V RALRA++NNP+RAVEYL +
Sbjct: 118 ASVSTGLLAAESALIVGDDYNQMVQNIMDMG---YPRDQVERALRASFNNPDRAVEYLLT 174
Query: 213 GIPEQTAVPPVARASAG------------GQAGNPPAQTQAQQPAAPAPTSGPNANPLDL 260
GIP++ V A G G G A + P +PL
Sbjct: 175 GIPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSMEGEGEEGDELAPGEDPLA- 233
Query: 261 FPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQE 316
FLR+ QF +R +VQ NP ILQ++G+ NP L+++I +
Sbjct: 234 ------------------FLRSQPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQ 275
Query: 317 HQTDFLRLINEPVEGGEGNV----------------------LGQLASA----MPQAVTV 350
+Q F R++ EP G G+ GQ A P + V
Sbjct: 276 NQAAFFRMLTEPSSGTAGSASVTPASGAQPGTGSGRAAESPRQGQEEGAGDYFAPGVIHV 335
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
TP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 336 TPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 381
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 123/438 (28%), Positives = 199/438 (45%), Gaps = 68/438 (15%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT 57
M++ KTL + ++ + P+ V ++K+ + + PA Q LI G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 58 -TLEENKVAENSFVVVMLTK-SKVSSSGASTVSAAPAN-----QAQTTSSAPPTSTQPTT 110
L + + ++ F+VVM + + S ++VS+A A QA S A ++T +
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATIASE 120
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S+ P +PP SV +A + PA + A + P + G A+S L G
Sbjct: 121 ASRG-IPADSPPASV-------SAKSSGATPAESGALSQTPQVEGTTTSGIASSGLAVGD 172
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA--VPPVARASA 228
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P T P+ +
Sbjct: 173 EYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEAR 229
Query: 229 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 288
+ PAQ Q + PA P LD +R F
Sbjct: 230 RPEHQTLPAQAGMDQTSRPAEAVHPEL---------------QQSRSELDIIRRLPHFAL 274
Query: 289 LRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASA 343
LR +Q +P +L EL + NP L+ +IQ +Q DF+ ++NEPV E G + QL
Sbjct: 275 LRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQADFINMLNEPVTDEEAGREMRQLREL 334
Query: 344 MPQ---------------------AVTVTPEEREAIERLEA----MGFDRALVLEVFFAC 378
+ Q + V+ EE E + +LE MG R L+V+ +C
Sbjct: 335 VAQQGRGNMYAGADAPSMEPTNAIRIEVSQEEAEQLRQLEQMMEPMGVSRDTCLQVWLSC 394
Query: 379 NKNEELAANYLLDHMHEF 396
++N ELAA +L+D++ ++
Sbjct: 395 DRNTELAAMHLMDNLEDY 412
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 193/434 (44%), Gaps = 92/434 (21%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA--------------- 107
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 185
SA P APA A P P S+ V + V G+ T+++I++MG
Sbjct: 108 --SADAPTAPA-----AEELQPQEEPNSNTEQVESVSTPGFVVGTQRNETIERIMEMG-- 158
Query: 186 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQP 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+QP
Sbjct: 159 -YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQP 216
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQF 286
A DLF Q G N + G++ +
Sbjct: 217 AED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVEDL 261
Query: 287 QALRTMVQANPQ----ILQELGKQNPH---------------LMRLIQEHQTDFLRLINE 327
+LR +V NP+ +L+ + + P L+ + ++ D + ++
Sbjct: 262 LSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADD 321
Query: 328 PVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R LV++V+FAC+
Sbjct: 322 MVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACD 381
Query: 380 KNEELAANYLL-DH 392
KNEE AAN L DH
Sbjct: 382 KNEEAAANILFSDH 395
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 138/276 (50%), Gaps = 78/276 (28%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 282 NSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 331
+ QFQ +R ++Q N P +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 163 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 222
Query: 332 GEGNVLGQLASAMPQA--VTVTPEEREAIER---------------------------LE 362
EG V G + PQ + VTP+E+EAIER L+
Sbjct: 223 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERVRSLAKEPLMVGSPMLPSFLPLPIFPQLK 281
Query: 363 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 282 ALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 315
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 154/319 (48%), Gaps = 67/319 (21%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A SSAPP ++ PT ++ A + A P
Sbjct: 65 RIDEKNFVVVMVTKAK----------------AGQGSSAPPEAS-PTAAPESSATSPAAP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG------QAASNLVAGSNLEATV 176
S PP +P+ AP +P VS G AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++QPA + AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
Query: 297 PQILQELGKQNPHLMRLIQ 315
P +L P L+R Q
Sbjct: 251 PALL-------PALLRHCQ 262
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 154/320 (48%), Gaps = 63/320 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
+S E + AP +P P S S AAS LV GS E + +I+ M
Sbjct: 122 KSPSEES--------APTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 242
G ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ ++
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSE 220
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV--------- 293
QPA + AG L+FLR+ QFQ +R ++
Sbjct: 221 QPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPA 256
Query: 294 ------QANPQILQELGKQN 307
Q NPQ+LQ GKQ+
Sbjct: 257 LLQQLGQENPQLLQVPGKQD 276
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 184/403 (45%), Gaps = 101/403 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL E++VK V ++ K +ET S P+ +Q LIH GKVLK L
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVETHLPS--MPSDRQKLIHSGKVLKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ K Q++TTS+ STQ
Sbjct: 59 DYADIKDGDKVIVIAQK-----------------QSETTSTV---STQ------------ 86
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ AP P P++ A S LV GS LE + +I
Sbjct: 87 -------------SQKAPVADDRTKAVDVPQPIN-------LAESTLVTGSELEMNIARI 126
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG + R V A+ AA+NNP+RAVE+L +G +P + S AG
Sbjct: 127 CEMG---FPRAEVEAAMAAAFNNPDRAVEFLTTG-----TIPDTSMISNSSDAG------ 172
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
A+ L P M N + +++ FQ LR ++Q++PQ+
Sbjct: 173 ----------VYDGGADMLRNIP-----MSDNLAS-----IQSHPAFQQLRQVIQSDPQV 212
Query: 300 LQEL----GKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAVTVTPE 353
LQ L G+ +P L++ I EHQ +F+ ++N + + G A P V +T
Sbjct: 213 LQRLLENIGETDPELLQKIIEHQDEFMEMLNSSDDMNGFPS------ADDGPNFVHLTEA 266
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
E +++ERLE +GF RA V+E F AC+KNEELAANYLL++ ++F
Sbjct: 267 EIQSVERLEGLGFSRAAVIEAFLACDKNEELAANYLLENANDF 309
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 117/198 (59%), Gaps = 25/198 (12%)
Query: 77 SKVSSSGASTVSAA--PANQAQTTS--SAP--PTSTQPTTTSQTPAPTVAPPQSVPESAP 130
+K SSSGAST +AA PA Q +AP P ++ T +Q P T
Sbjct: 1 AKASSSGASTATAAKVPATPGQVCGHPAAPVVPATSVARTPTQAPVAT------------ 48
Query: 131 PPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 190
A AP A A A S +DVY QAASNLV+G+NLE +QQILDMGGG+W+R+
Sbjct: 49 --AETAPPSAQPQAAPAATLAASGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERD 106
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PPAQTQAQQPAA 246
TV+RALRAAYNNPERA++YLYSGIP PPVA A AGGQ N PAQ P
Sbjct: 107 TVVRALRAAYNNPERAIDYLYSGIPVNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQ 166
Query: 247 PAPTSG-PNANPLDLFPQ 263
P+ S P+ANPL LFPQ
Sbjct: 167 PSAASARPDANPLILFPQ 184
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 192/434 (44%), Gaps = 92/434 (21%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATA--------------- 107
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGG 185
SA P APA A P P S+ + V G+ T+++I++MG
Sbjct: 108 --SADAPTAPA-----AEELQPQEEPSSNTEQAESVSTPGFVVGTQRNETIERIMEMG-- 158
Query: 186 SWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQP 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+QP
Sbjct: 159 -YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTAEQP 216
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQF 286
A DLF Q G N + G++ +
Sbjct: 217 AED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVEDL 261
Query: 287 QALRTMVQANPQ----ILQELGKQNPH---------------LMRLIQEHQTDFLRLINE 327
+LR +V NP+ +L+ + + P L+ + ++ D + ++
Sbjct: 262 LSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADD 321
Query: 328 PVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R LV++V+FAC+
Sbjct: 322 MVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACD 381
Query: 380 KNEELAANYLL-DH 392
KNEE AAN L DH
Sbjct: 382 KNEEAAANILFSDH 395
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 69/234 (29%)
Query: 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 226
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP----------- 178
Query: 227 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
PA P L+FLR+ QF
Sbjct: 179 -----------------PAMENP---------------------------LEFLRDQPQF 194
Query: 287 QALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------V 336
+R ++++NP +L Q LG+ NP L++ I +HQ +F+ ++NEPVEG G V
Sbjct: 195 NNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPVEGEGGAAGSGPPV 254
Query: 337 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ QL + + VTP+E+EAIERL+A+GFD LV++ +FAC+KNE LAAN+LL
Sbjct: 255 MEQLPTGQ-NVIPVTPQEKEAIERLKALGFDEGLVIQAYFACDKNENLAANFLL 307
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 51/233 (21%)
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
++QPA A AG L+FLR+ QFQ +R ++Q NP
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNP 87
Query: 298 QILQEL----GKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA 347
+L L G++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 88 ALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQM 146
Query: 348 --VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 147 NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 197
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 195/433 (45%), Gaps = 79/433 (18%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + +T + PP + + TT P +
Sbjct: 64 DGDQVVFMVSQKKST---------------KTKVTEPPIAPESATT---------PGREN 99
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN--LVAGSNLEATVQQILDMG 183
A P + APA P + + ++AS V G+ T+++I++MG
Sbjct: 100 STEASPSTDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG 159
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE P + +A A T A+Q
Sbjct: 160 ---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQ 216
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQFQ 287
P+ A T+ A DLF Q G NA +G L + +
Sbjct: 217 PSTAATTAEQPAED-DLFAQAA--QGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLL 273
Query: 288 ALRTMVQANPQ----ILQELGKQNPH---------------LMRLIQEHQTDFLRLINEP 328
+LR +V NP+ +L+ + + P L+ + ++ D + ++
Sbjct: 274 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 333
Query: 329 VEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 334 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 393
Query: 381 NEELAANYLL-DH 392
NEE AAN L DH
Sbjct: 394 NEEAAANILFSDH 406
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 166/343 (48%), Gaps = 58/343 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS--------VSDVYGQAASNLVAGSN 171
QS+P E A +P+ + P+SS + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
+ NP + P+ P P S +A + + + +FLR+ QF +R+
Sbjct: 212 STNP-----SLIPSGPQPASATSA-----------ERSTESNSDPFEFLRSQPQFLQMRS 255
Query: 292 MVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
++ NP +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 256 LIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL FED
Sbjct: 366 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLS--SSFED 414
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 166/343 (48%), Gaps = 58/343 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS--------VSDVYGQAASNLVAGSN 171
QS+P E A +P+ + P+SS + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 231
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 232 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 291
+ NP + P+ P P S +A + + + +FLR+ QF +R+
Sbjct: 212 STNP-----SLIPSGPQPASATSA-----------ERSTESNSDPFEFLRSQPQFLQMRS 255
Query: 292 MVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
++ NP +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 256 LIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 366 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 193/434 (44%), Gaps = 88/434 (20%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ + + + + AP A TT+ ST+P +TS T APT A +
Sbjct: 64 DGDQVVFMISQKRSTKTKVTEPPIAPETAA-TTNPVRDDSTEPASTS-TDAPT-AETSTA 120
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS-NLVAGSNLEATVQQILDMGG 184
E + P PA G A++ V G+ T+++I++MG
Sbjct: 121 AEGSQPQEEQTSTTEPA-----------------GSASTPGFVVGTQRNETIERIMEMG- 162
Query: 185 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA--Q 242
+ RE V RALRAA+NNP+RAVEYL GIPE P +P Q A +
Sbjct: 163 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLRQP------------DPQQQAVAANE 208
Query: 243 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQF 286
QPA A T+ A DLF Q G N +G L + ++ +
Sbjct: 209 QPATAATTTEQPAED-DLFAQAA--QGGNTSSGALGSVGSAADAAQGGPPGSIGLTVEDL 265
Query: 287 QALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----- 337
+LR +V NP+ +L+ + + P L I + F+ ++ E V +V+
Sbjct: 266 LSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADE 325
Query: 338 ------------------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
GQ V TPE+ +AI RL +GF+R LV++V+FAC+
Sbjct: 326 MVEGEEVEVAGESSTAGPGQSEGESSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACD 385
Query: 380 KNEELAANYLL-DH 392
KNEE AAN L DH
Sbjct: 386 KNEEAAANILFSDH 399
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 189/398 (47%), Gaps = 94/398 (23%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L E + +N FV++M + K A A ++ TTS+A T+T PTT P P
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAP--QQAQSDTTSTTSAASTTATNPTTV---PKPA 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
V+ P + ++ S+L+ G LEA +++
Sbjct: 113 VSQPATTQQTGSQGTG-----------------------------SDLLQGPELEAKIKE 143
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPA 237
I MG ++R V++AL+AAY NPERAV+YL SG IP++ P+
Sbjct: 144 IESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE------------------PS 182
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q Q+ PL QGL G L L + QFQ + ++ NP
Sbjct: 183 QQQS---------------PL----QGL----QGPGVEQLAQLAQNPQFQHIAQAIRQNP 219
Query: 298 QILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
+LQ +L + NP + RL+Q++ FL+L+ E G L P A+ VTPE
Sbjct: 220 ALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGGQTLP------PNAIQVTPE 273
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
E+ I+ + +MGFD+ LE + C+KN+ELA NYL +
Sbjct: 274 EKADIDDIISMGFDKNDALEAYITCDKNKELAINYLFE 311
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 140/269 (52%), Gaps = 54/269 (20%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G A + + MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 135 SALAMGEQRAAAIAGMEAMG---FARDQIDAAMRAAFFNPDRAVEYLLNGIPESARQEQR 191
Query: 224 ARASAGGQAGNPPAQTQAQQPA--APAPTSGPNAN--PLDLFPQGLPNMGSNAG------ 273
A A++ PA TQ QQPA A A T+ A+ P++LF G G
Sbjct: 192 AAAAS-----PQPAPTQGQQPADTAGAETTQQQASDEPVNLFEAAAQAGGGGRGGAGGRG 246
Query: 274 --------------------AGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPH 309
+ LDFLRN+ QFQ LRT+VQ PQ ILQ + NP
Sbjct: 247 AGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGNPQ 306
Query: 310 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGF 366
L ++I +H F++L+ E + G+ A+P Q ++VT EER+AIERL +GF
Sbjct: 307 LAQIITQHPEQFMQLLAE--DAGDD-------VAIPPGAQEISVTAEERDAIERLCRLGF 357
Query: 367 DRALVLEVFFACNKNEELAANYLLDHMHE 395
DR LV++ +FAC+KNEELAAN+L D E
Sbjct: 358 DRDLVVQAYFACDKNEELAANFLFDQPDE 386
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 88/407 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQADSLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTT-SQTP 115
L++ + + + V+V+ +K+ S P + P + S T
Sbjct: 56 LLKDYSDIKDGDKVIVISSKT----------------------SDPSKNQDPNSQPSSTT 93
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
PT PPQ PP P P+ V S Y +S V GS LE +
Sbjct: 94 TPTSKPPQ------PPTQDDTPN-------QPSSGNVVS-EQTYENVSSKFVMGSELEQS 139
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +I +MG ++R V RA+ AA+NNP+RAVE+L +G N
Sbjct: 140 INRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTG--------------------NI 176
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
PA ++ PN N +L G AG L L++ F+ L V++
Sbjct: 177 PA------------SNMPNINAQNL---ATAEHGDPAGDDVLQMLQSHPMFEQLIQAVRS 221
Query: 296 NPQILQE----LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 351
+P +LQ+ LG+ NP L++ I + Q +F+ L++ P +T+T
Sbjct: 222 DPNLLQQMLENLGQTNPELLQAIIQRQDEFVELLSSSARAAATADQYSTTENNPNIITLT 281
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P E E+I+RLE +GF R V+E + AC+KNEELAANYLL++ ++F++
Sbjct: 282 PVEMESIQRLEGLGFSRPAVIEAYLACDKNEELAANYLLENFNDFQE 328
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 179/424 (42%), Gaps = 124/424 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTT 58
MK+ TLK +EV P D V + I GS + AS+ LIH GK+LK
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 59 LEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + + + + ++V+ +K Q+ A
Sbjct: 57 ISDYSDIKDGDKIIVLFSK------------------------------------QSEAS 80
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
T+A P P S P A P P P P + L+ G LE +
Sbjct: 81 TIANPTPAPTSTPIADANTSPPKPIPTTDP----------------NALLMGEELEKAIN 124
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
I++MG +D E+V A+ AA+NNP RA+E L R +
Sbjct: 125 GIVEMG---FDVESVKAAMSAAFNNPNRAIELL-------------TRHEVDVSDHDTH- 167
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q+ Q T + L +G LD LR F+ +R +V++NP
Sbjct: 168 --QSVQTTVSISTICYKNHEL---------------SGVLDELRQHPMFEQMRAIVRSNP 210
Query: 298 Q----ILQELGKQNPHLMRL---------------IQEHQTDFLRLINEPVEGGEGNVLG 338
Q IL +G+ +P L+++ I E+Q +F++L++EPV G G+ +
Sbjct: 211 QTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAITENQEEFIQLLSEPVLGTSGDFID 270
Query: 339 QLASAMPQAVTVTPEEREAIER------LEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
Q++T+TPEE E+I R LE +GF R +E F AC+KNEE+AANYLL++
Sbjct: 271 ------AQSITLTPEEMESINRVSDTIYLEGLGFSRPAAVEAFLACDKNEEMAANYLLEN 324
Query: 393 MHEF 396
+ ++
Sbjct: 325 IADY 328
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 187/430 (43%), Gaps = 99/430 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
MK+ V+TL+ T EI V D + D+KK IE V +P +Q LI G +L
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIENV-----FPEMACDKQKLIFSGNIL---- 51
Query: 58 TLEENK----VAENSFVVVMLTKSKV------SSSGASTVSAAPA--NQAQTTSSAPPTS 105
++E+K + EN V+VM+T+ + S+ A+ ++++ + N+ + S
Sbjct: 52 -IDEDKAVDILKENDIVIVMVTRKIITNKKNNSTKNANELASSDSLKNKDEKNSDDKNND 110
Query: 106 -TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAAS 164
T+ T T ++ P+S+
Sbjct: 111 KTKNTDTENKGNENISNPESI--------------------------------------- 131
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 224
L+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G Q +
Sbjct: 132 -LLTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGF--QDIIDDGH 185
Query: 225 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 284
S + P + + N N LD M N+ + LRNS
Sbjct: 186 DISEMKDSSENP--NDRDENYSNLSNLLMNYNLLD--ENERQEMSVNSES-----LRNSP 236
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
F +R +NPQ IL+ +G+ +P L+ I+E+Q +FL + + +G N L
Sbjct: 237 FFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL-QNYDGDNNNAENDL 295
Query: 341 ASAMPQA--------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 386
A ++ E E++ +LE++GF + + LE F AC+KNEE+AA
Sbjct: 296 IPNYEYADETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAA 355
Query: 387 NYLLDHMHEF 396
NYL ++M+++
Sbjct: 356 NYLFENMNDY 365
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 178/422 (42%), Gaps = 85/422 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K SA P+S QP +
Sbjct: 58 SLKIKEGDAIIFMISKTK--------------------KSATPSSEQPQASK-------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + +P PA A + A A + ++ Q G E ++ I+
Sbjct: 90 PEKESSKESEDKGSPTPA---AEEESGAGASGAQAGSIFAQ-------GDERENNIRNIM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQT 239
+MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS+GG P +
Sbjct: 140 EMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSASSGG--AQPAVEA 194
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNM-------GSNAGAGTLDFLRNSQQFQALRTM 292
++ G N LF +A G D L Q + LR
Sbjct: 195 ESTHNEDEENEHGEN-----LFEAAAAAAAQEGGAGDQDAAEGAGDDLNEENQMRLLRAA 249
Query: 293 VQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG---------- 338
+Q NP+++Q +L NP + LIQ+ F+R G G L
Sbjct: 250 LQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LGSGEDLDFEFEEGEGDA 304
Query: 339 -----QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
P V + T ++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L
Sbjct: 305 EGGESGGQGEQPGTVRIELTEQDESAINRLCELGFDRNLVIQVYMACDKNEEVAADILFR 364
Query: 392 HM 393
M
Sbjct: 365 DM 366
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 187/427 (43%), Gaps = 93/427 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ T EI V D +SD+KK IE V P +Q LI G +L +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNIL-----MN 53
Query: 61 ENKVA----ENSFVVVMLTKSKVSSSGASTV--------SAAPANQAQTTSSAPPTS-TQ 107
E+KV EN V+VM+T+ ++S ++ S + N+ + S T+
Sbjct: 54 EHKVVDILKENDIVIVMVTRKIITSKKNNSTKNANELASSDSLKNKDEKNSDDKNNDKTK 113
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLV 167
T T + ++ P+S+ L+
Sbjct: 114 NTDTENKESENISNPESI----------------------------------------LL 133
Query: 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 227
G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G + +
Sbjct: 134 TGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGFQD-----IIGDGH 185
Query: 228 AGGQAGNPPAQ-TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 286
+ +P + + + N N LD M N+ + LRNS F
Sbjct: 186 DISEIKDPSENPNERDEKYSNLSNLLMNYNLLD--ENERQEMPVNSES-----LRNSPFF 238
Query: 287 QALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLR-LINEPVEGG--EGNVL-- 337
+R +NPQ IL+ +G+ +P L+ I+E+Q +FL L N + E +++
Sbjct: 239 NIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDTDNNNSENDLIPN 298
Query: 338 -------GQLASAMPQAVTVTPE-EREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
Q +T E E E++ +LE++GF + + LE F AC+KNEE+AANYL
Sbjct: 299 YEYTDETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANYL 358
Query: 390 LDHMHEF 396
++M+++
Sbjct: 359 FENMNDY 365
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 182/430 (42%), Gaps = 102/430 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
++V K K ++V E + V DVK+ + + D A Q LI GKVL+D
Sbjct: 2 VQVVFKDFKKNKETLDVDLEHESVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAKPF 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + EN V++M++K K + PA +
Sbjct: 59 AETGLKENDHVIMMVSKKK----------SVPAKE------------------------- 83
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P PE+ P PA V V + + V G TV++I
Sbjct: 84 --PVKEPETEPVATTETPAATTTEPAPAGAGSV-----VADNSTPDFVTGQQRNETVERI 136
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
++MG ++R V RALRAA+NNP+RAVEYL +GIP A A P QT
Sbjct: 137 MEMG---YERAQVERALRAAFNNPDRAVEYLITGIP------------AAQPAEQPAEQT 181
Query: 240 --QAQQPAAPAPTSGPNA-NPLDLFPQGLPNMGSNAGA---------------GTLDFLR 281
QAQ A+P + P + DLF Q L N G +AGA G++
Sbjct: 182 PEQAQSSASPEHSEPPEQPHEDDLFAQALGNNGQSAGAEGTPGTPGTASAAPPGSIGL-- 239
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI------------ 325
+ ALR +V NP+ +L+ L + P L I + F+ ++
Sbjct: 240 TVEDLMALREVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEVVGENLTHMD 299
Query: 326 -----NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
+E + GE G +S Q V ++ + +A+ERL +GF+R LV++V+FAC K
Sbjct: 300 EFTAESEAAQSGEAPGAGGPSSESAQIVQLSEHDEQAVERLCELGFERTLVIQVYFACEK 359
Query: 381 NEELAANYLL 390
NEE+ AN L
Sbjct: 360 NEEITANMLF 369
>gi|195604818|gb|ACG24239.1| hypothetical protein [Zea mays]
Length = 98
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 311 MRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 368
M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI RLE MGFDR
Sbjct: 1 MQLIQENQAEFMRLISEPLEGDEENEMMLDQMADA-TETIAVTPEENEAILRLEGMGFDR 59
Query: 369 ALVLEVFFACNKNEELAANYLLDHMHEFED 398
ALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 60 ALVLEVFFACNKNEQLAANYLLDHMHEFDN 89
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 183/408 (44%), Gaps = 101/408 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + FVVVML K KV T+ +P +T+ + AP V
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------------------------TAAEPASTATSSAPVV- 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+AP A + A APA ++ S E TV I
Sbjct: 97 -----QENAPSTPAAPAPASIADPVPAAPAAAEQLT-------------SQQEDTVSAIT 138
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 139 GMG---YDREQTIAALRAAFWNADRAVEFLLTGIPEDVV--------------------- 174
Query: 241 AQQPA---APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
Q+P APA + +AN L+ L N Q +R M+Q NP
Sbjct: 175 DQEPLLADAPAVENEEDAN------------------DDLNMLANMPQLGEIRNMIQQNP 216
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGG--EGNVLGQLASAMPQAVT 349
+ +LQ+L NP L++ IQ +Q F+ ++N P GG EGN Q +
Sbjct: 217 EMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGSAPPAGGVEEGN--AQARQPRRHVIH 274
Query: 350 VTPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 395
++PEE EAI R++++ + ALV+E +FAC+KNEE A N++ + E
Sbjct: 275 LSPEEAEAIARIKSIVSNAPEALVVEAYFACDKNEEAAINFIFSSLDE 322
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 178/397 (44%), Gaps = 86/397 (21%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQ----ILQELGKQNPH---------- 309
+ + +LR +V NP+ +L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALRPLLENISARYPQLREHIMANPE 299
Query: 310 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 356
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 392
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 178/397 (44%), Gaps = 86/397 (21%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQ----ILQELGKQNPH---------- 309
+ + +LR +V NP+ +L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 310 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 356
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 392
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 178/397 (44%), Gaps = 86/397 (21%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQ 161
PP + + TT P + A P + APA P + + +
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTEGTE 135
Query: 162 AAS--NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
+AS V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 279
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 280 LRNS----------------QQFQALRTMVQANPQ----ILQELGKQNPH---------- 309
+ + +LR +V NP+ +L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 310 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 356
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 392
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 176/385 (45%), Gaps = 51/385 (13%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN---------------ETSTSGNSGTSNT 112
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ S S + +G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 113 SGVSGSGSGSGAVTSGGGDFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP---- 262
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 263 ---QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQ 315
QG G+ +GA + Q + LRT +Q NP+++Q +L NP + LIQ
Sbjct: 226 AAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQ 283
Query: 316 EHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFDR 368
+ F+R E +E + A+ ++ ++ AI RL +GFDR
Sbjct: 284 QDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDR 343
Query: 369 ALVLEVFFACNKNEELAANYLLDHM 393
LV++V+ AC+KNEE+AA+ L M
Sbjct: 344 NLVIQVYIACDKNEEVAADILFRDM 368
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 172/397 (43%), Gaps = 67/397 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTV 119
+ ++ F+ +M+ K + A + AP+ TT ST +T P +
Sbjct: 58 SYNITDSGFIXMMIKKPR----EAPATTPAPS----TTPHLNYISTNHHHYCRTNPNHXL 109
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
S P PA + S S Q +S+ G+ LEAT++ I
Sbjct: 110 TNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKNI 169
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
DMG + R+ V+RALR +NN ERA+EYL S GN PA
Sbjct: 170 TDMG---FARDQVLRALRLTFNNAERAIEYLVS--------------------GNIPAAN 206
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ- 298
+ G NP + LRN F LR + NP
Sbjct: 207 DPEDEEEMEGGGGSGDNPFEA-------------------LRNHPHFNLLREAISKNPSI 247
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
ILQ+L + NP L+R IQE+ +F+RL G + + VT EE
Sbjct: 248 IPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG--------GNPGQFTLQVTQEES 299
Query: 356 EAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 391
EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 300 EAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 336
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 194/417 (46%), Gaps = 73/417 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M++K K + S++ ++ T P +Q A
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + + AP + ++ + QA +N+ A
Sbjct: 118 APATPSPN-------------RTSGAPNDSSALAMGEQRAQAIANMEA------------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+ NPERAVEYL +GIPE V + +A + G+
Sbjct: 153 -MG---FERSQIDAAMRAAFFNPERAVEYLLTGIPEN-----VQQQTAAQRVGHAIPPPA 203
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRN 282
+ ++G A DL + L ++ + AG G L +LR
Sbjct: 204 PAAASPAPASAGEAAG--DLEGENLFDLAARAGGARSGSGGAAAAGASAQDLGNLSWLRQ 261
Query: 283 SQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
+ QFQ LR +VQ P QILQ+L NP L + I ++ FL+L++E G
Sbjct: 262 NAQFQQLRQVVQQQPGMLEQILQQLSAGNPQLAQTIAQNPEQFLQLLSEH---------G 312
Query: 339 QLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ +P ++VT EER+AIERL +GF + ++ +FAC KNEELAAN+L D
Sbjct: 313 DDDAPLPPGAHQISVTEEERDAIERLTRLGFSQDQAIQAYFACEKNEELAANFLFDQ 369
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 175/385 (45%), Gaps = 51/385 (13%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A + + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN---------------ETSTSGNSGTSNT 112
Query: 147 PAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 206
+ S S + G EA++Q I++MG ++R V ALRA++NNP RA
Sbjct: 113 SGVSGSGSGSGAVTSGGGDFALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRA 169
Query: 207 VEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP---- 262
VEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 170 VEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAAA 225
Query: 263 ---QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQ 315
QG G+ +GA + Q + LRT +Q NP+++Q +L NP + LIQ
Sbjct: 226 AAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLIQ 283
Query: 316 EHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFDR 368
+ F+R E +E + A+ ++ ++ AI RL +GFDR
Sbjct: 284 QDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFDR 343
Query: 369 ALVLEVFFACNKNEELAANYLLDHM 393
LV++V+ AC+KNEE+AA+ L M
Sbjct: 344 NLVIQVYIACDKNEEVAADILFRDM 368
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/253 (38%), Positives = 135/253 (53%), Gaps = 26/253 (10%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPP 222
++ V G L TV+ +++MG ++RE V+RALRA+YNNP+RAVEYL++GIP A
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAEAA 191
Query: 223 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF---------PQGLPNMGSN-- 271
A A A AP P P P +LF QG G+N
Sbjct: 192 GPAAPPAQPPAGGGAAPAAAPAPAPQPAVPPPNQPQNLFQLAQQQQQQQQGPATGGANPF 251
Query: 272 AGAGTLDF--LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI 325
GAG +D LR++ Q Q LR +V ANPQ I+Q+L NP ++ ++ ++L+
Sbjct: 252 GGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFAQMFAQNPEALMQLL 311
Query: 326 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
+G Q + VTPEE+ AIERLEA+GF R V+E +FAC+KNEELA
Sbjct: 312 M-----NQGEGGEGGLPPGAQYINVTPEEQAAIERLEALGFPRQAVIEAYFACDKNEELA 366
Query: 386 ANYLLDHMHEFED 398
ANYL + E +D
Sbjct: 367 ANYLFEGGFEDDD 379
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 127/421 (30%), Positives = 177/421 (42%), Gaps = 101/421 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + + QGK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + S+ + A T + + + SQ A
Sbjct: 36 SYNIEEKGFVVCMVNKPKPTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAV--- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P P +D + S L GS + +
Sbjct: 93 -----------PATPTP---------------QRSADAGSEEPSGLAMGSQRTEAIANME 126
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+NNP+RAVEYL +GIP+ R + P A
Sbjct: 127 AMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPDNI------RQEQQQREAAPAAHAA 177
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----------------------GAGTLD 278
A A G ++LF + G+NA G LD
Sbjct: 178 QPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGGSGGNEAAAAAAAAAAGQGGDLGNLD 237
Query: 279 FLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FLR++ QFQ LR +VQ PQ ILQ+LG NP L LI + FL+L+ E +
Sbjct: 238 FLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD-- 295
Query: 335 NVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 296 -------VPLPPGAQAISVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFD 348
Query: 392 H 392
Sbjct: 349 Q 349
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 196/420 (46%), Gaps = 69/420 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F I+ +P + VS +K+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+A A A + T P +QT A
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSASAAPATPAPAQTATPAAPAAPAQTAGTPAA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + S A P + A GQ + +A NLEA
Sbjct: 118 APATPTPSRTAAAEPGVGVGDSNTLA------------IGQERAEAIA--NLEA------ 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++R + A+RAA+ NPERAVEY+ +GIPE + SA A
Sbjct: 158 -MG---FERSQIDAAMRAAFYNPERAVEYILNGIPEN-----LQHTSARPAPAAAAAPAA 208
Query: 241 AQQPAAPAPTSGPNANPLDLFPQ---------------------GLPNMGSNAGAGTLDF 279
A A N N DL Q + + G G L+F
Sbjct: 209 APAAPAAGGDDDGNVNLFDLAAQQGRGSGARGGAGADAGAGAAAAVAAAAAQQGFGNLEF 268
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LR++ QFQ LR +VQ PQ ILQ+LG NPHL +LI ++ FL+L++E
Sbjct: 269 LRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSES------- 321
Query: 336 VLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
G + +P Q ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L D
Sbjct: 322 --GDDDAPLPHGAQQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAANFLFDQ 379
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 180/416 (43%), Gaps = 65/416 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +N V++M++K K A P++T+ T
Sbjct: 58 SCGLKDNDQVIMMISKKK----------------------ATPSATKVT----------E 85
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
PPQ E P P+ P+ A + +++ V GS TV+
Sbjct: 86 PPQQSEEQ--PVQEPSQEQEPSGTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVE 143
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+I++MG ++R+ V RALRAA+NNP+RAVEYL GIPE PP + +
Sbjct: 144 RIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQQPPPPQQESQSAETQQQQ 200
Query: 238 QTQAQQPAAPAP---TSGPNANPLDLFPQGLPNMGSNAGAGTLD-------FLRNSQQFQ 287
Q Q + P ++ DLF Q G+G +
Sbjct: 201 QQQQESERQNQPEAESTNEQYEGEDLFAQAAQGTRDTTGSGADSNASAPGSIGLTMEDLL 260
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
ALR +V NP+ +L+ L + P L I + F+ ++ + V G N + +
Sbjct: 261 ALRQVVSGNPEALAPLLESLSTRYPQLREQIMANPEVFISMLLDAV-GDNLNAMENITEP 319
Query: 344 MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ A + +T ++ +AI RL +GF+R LV++V+FAC+KNEE+AAN L +
Sbjct: 320 VENAEPTEAPSLDLTEDDEQAISRLCELGFERTLVIQVYFACDKNEEIAANMLFND 375
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 174/399 (43%), Gaps = 97/399 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+AE+ F+V+M G A PA A + PPT P T
Sbjct: 60 DYKIAEDKFIVLM---------GKKMPPAKPAGTA-AEENVPPT----------PPLTAG 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P ++ PP +S + A ++ Q++
Sbjct: 100 PSETRTHEIPP-----------------------LSPAPALVMAPPPAPPSMTPNEQRVR 136
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
D+ + + V ALRA++N+PERA+EYL SGIP+ P A A+A G A
Sbjct: 137 DLMAMGYGEQEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPA-------- 186
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
PN P P +F +R M++ NP++L
Sbjct: 187 ------------PNLQPWMSDP----------------------RFARVRDMLRQNPELL 212
Query: 301 Q----ELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL---GQLASAMPQAVTVT 351
+ L + +P I++HQ +FL +IN G GEG+ L ++ +A +T+T
Sbjct: 213 EVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAGSVGEGSDLSEDSEMDAASRHQITLT 272
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
EE A+ERL ++GF R L ++ + AC+KNEELAA+ L
Sbjct: 273 SEEAAAVERLVSLGFHRDLAVQAYLACDKNEELAADILF 311
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 186/400 (46%), Gaps = 73/400 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E KV E ++ M+++ K + + V+A A++A + S P TSTQ
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEAVSAPSEPETSTQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+A AA A PA S SD + A +Q ++
Sbjct: 105 ----TPETASSTAANASTPA-------------SSSD-FASGQDREAA-------IQNMM 139
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R + RALRAA+NNP RAVEYL +GIPE A +A PP Q
Sbjct: 140 EMG---YERPQIERALRAAFNNPHRAVEYLITGIPE-----------ALTRAEQPP---Q 182
Query: 241 AQ-QPAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLDFLRNSQQFQALRTMVQANP 297
AQ +PAA A + + + NM + A AG + LR +Q+ P
Sbjct: 183 AQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEPVPAQEDRLALLRAAIQSEP 242
Query: 298 Q----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT---V 350
+ +LQE+ NP +LI++ F+ + G+ + G + V +
Sbjct: 243 ELVQSVLQEIAASNPQAAQLIEQDPEAFISTL-----LGQHDDAGYEIEEEEEGVVRVQL 297
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + AI RL +GFDR +V++V+ AC++NEE+AA+ L
Sbjct: 298 SESDESAIRRLCELGFDRDMVVQVYLACDRNEEVAADILF 337
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 136/253 (53%), Gaps = 27/253 (10%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQT 218
G ++S+ V G L+A + +++MG ++ + V+RALRA+YNNP+RAV+YL SG IPE
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRASYNNPDRAVDYLMSGNIPEVE 186
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPT----------SGPNANPLDLFPQGLPNM 268
P A A A P AAP+ T SG + +LF +
Sbjct: 187 GPAPAATAPPTQTAPTIPTPA-----AAPSQTPAAPAAQPAPSGSAGSAENLFATVARDR 241
Query: 269 GSNAGAG--TLDFLRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEHQTDFL 322
G++A A +L+ L NS Q Q LR MVQ NP + LQ++ NP L +LI +H
Sbjct: 242 GTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQHPEAVY 301
Query: 323 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 382
+ V GGEG L + +T +E EA++RLE +GFDR +VL+ + C+KNE
Sbjct: 302 EWLG--VGGGEGEDDDDLMGPQTMRIDLTQQEAEAVQRLEQLGFDRQVVLQAYLLCDKNE 359
Query: 383 ELAANYLLDHMHE 395
ELAANYL + E
Sbjct: 360 ELAANYLFEQGEE 372
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 150/334 (44%), Gaps = 83/334 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+VVM+TK+K P + +P T TP P
Sbjct: 59 SAGIKENDFLVVMVTKAK-----------------------KPVAAKPAATP-TPVPAAT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP AA A PAP A PA + DV +A +NL + EA V+
Sbjct: 95 P-------GPPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVK--- 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
LRAA+ NP+ AVE+L +GIPE VA A+A A N A T
Sbjct: 145 -------------HCLRAAHGNPDIAVEFLTNGIPE-----GVAEAAA---AMNTSAVTS 183
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ + SG L LRN QF LR +VQ+NPQ+L
Sbjct: 184 PSASSESSSGSGQ----------------------PLQALRNHPQFNDLRRLVQSNPQML 221
Query: 301 Q----ELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
Q ++G+Q P L++ I +Q FL+++NEPVE
Sbjct: 222 QQVLTQIGQQQPQLLQEINANQALFLQIMNEPVE 255
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
Q + +T EE A++RL MGFDR+ + F AC+KNE LAAN L+D M
Sbjct: 357 QVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSM 404
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 159/332 (47%), Gaps = 60/332 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K A AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDM 182
S + +P + +P P S S AAS LV GS E + +I+ M
Sbjct: 117 TSREDKSP---SEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSM 173
Query: 183 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQA 241
G ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 174 G---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGSV 213
Query: 242 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----P 297
Q+ AP + AG L+FLR+ QFQ +R ++Q N P
Sbjct: 214 QESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 298 QILQELGKQNPHLM------RLIQEHQTDFLR 323
+LQ+LG++NP L+ R +++ + FLR
Sbjct: 256 ALLQQLGQENPQLLQVRPRVRELRQPPSQFLR 287
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 134/279 (48%), Gaps = 63/279 (22%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 224 ARASAGGQAGNPPAQTQAQQ--PAAPAPTSGPNANPLDLF-----------------PQG 264
A +A PP + Q PAAP S P +N PQ
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSNSPAAPAPAPATAPAAAAPPANQPQN 248
Query: 265 LPNMGSNAGAGT---------------------LDFLRNSQQFQALRTMVQANPQILQ-- 301
L + G L L + Q Q LR +V+ NP ++Q
Sbjct: 249 LFQLAQQQQTGGGGGAAAGMGGMGGMGGMGAPDLAALAANPQIQQLREIVRQNPALIQPL 308
Query: 302 --ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 359
+L QNP + + + + L+L+ EG G+ Q ++VT EEREAI
Sbjct: 309 IQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGPEGE-VPPGAQVISVTVEEREAIA 367
Query: 360 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 368 RLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 404
>gi|6688552|emb|CAB65692.1| Rad23 Protein [Solanum lycopersicum var. cerasiforme]
Length = 65
Score = 121 bits (303), Expect = 7e-25, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 334 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
GNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+
Sbjct: 1 GNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHL 60
Query: 394 HEFED 398
HEF++
Sbjct: 61 HEFDE 65
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 137/262 (52%), Gaps = 42/262 (16%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 216
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 579 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 635
Query: 217 --------------QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
TA PP A+ G + AQ A AP G
Sbjct: 636 EAAPATPATTTPSGSTAAPPTT-AAVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAG 691
Query: 263 QGL--PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQE 316
QGL P G N G LDFLR++ FQ LR +VQ PQ ILQ++G NP L +LI +
Sbjct: 692 QGLAPPAEGGNLG--NLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQ 749
Query: 317 HQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 376
+Q FL+L++E ++ QL Q +TVT EER+AIERL +GF R V++ +F
Sbjct: 750 NQDQFLQLLSEDIDDD-----AQLPPGAHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYF 803
Query: 377 ACNKNEELAANYLLDHMHEFED 398
AC+KNEELAAN+L + E +D
Sbjct: 804 ACDKNEELAANFLFEQPDEGDD 825
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
A S L G LE T+ ++ MG + R+ +A+RAA+NNP+RAVEYL +G+P
Sbjct: 151 AESALFTGPQLEETLTHLVAMG---FPRDQAEQAMRAAFNNPDRAVEYLMNGMP------ 201
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
P A GG +G +AQ A +A+ + +G+ LR
Sbjct: 202 PEVSALFGGASG------EAQDAEGDAIADEGDADGDEGDEDDGNPLGA---------LR 246
Query: 282 NSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
+ F +R MVQANP Q+LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 247 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSGQGTGEAGAP 306
Query: 338 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
G A + +TP+E EA++RLEA+GF R +E + AC++NEE+AANYL +++++
Sbjct: 307 GTGFGA-GGIIQMTPDEMEALQRLEALGFSRHQAVEAYLACDRNEEMAANYLFENLNDLG 365
Query: 398 D 398
D
Sbjct: 366 D 366
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 74/97 (76%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
EQ A ASA QA + PA QA PTSG
Sbjct: 218 EQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 177/368 (48%), Gaps = 36/368 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSVSDVYGQAA-SNLVAGSNLEATVQ 177
+ P + + + PA PA A +P+ AP ++ + AA S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 298 ----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 353
Q+LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 354 EREAIERL 361
E EA++R+
Sbjct: 332 EMEALQRV 339
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 188/408 (46%), Gaps = 79/408 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K++E F+V+M+ K + +T + +++ ++ S T++QP T+ P T
Sbjct: 58 SYKISEQGFIVMMIKKPR---EAPATATTTSPSESTSSPSNSTTTSQPANTTSAPVTTPN 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P + P + P P+ +P+ +S +D V G+ LE T++ I+
Sbjct: 115 PTPARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTD--------FVTGTELENTIKNIV 166
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP------PVARASAGGQAG 233
DMG + RE VIRALR YNN +RAVE L SG IPE A V Q G
Sbjct: 167 DMG---FQREQVIRALRLGYNNADRAVELLLSGSIPENAADDEEEDNMDVGGGGNDQQGG 223
Query: 234 NPPAQTQAQQPAAP----APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
+ P + P P A PN P
Sbjct: 224 DNPFEALRNHPYFPMLRQAIAQDPNIIP-------------------------------- 251
Query: 290 RTMVQANPQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----GQLASAMP 345
T++Q +L + NP L+R I E DF+R+ G G V GQ
Sbjct: 252 -TLLQ-------QLAQSNPELVRQISERPNDFIRIFQGEEGGNGGGVGGSQPGQF----- 298
Query: 346 QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 392
+ VT EE +AIERL+ + G ++ +V+E +FAC+KNEELAA+YL +
Sbjct: 299 -TIQVTREENDAIERLQQLTGLEKQVVIEAYFACDKNEELAASYLFER 345
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 134/260 (51%), Gaps = 38/260 (14%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE------- 216
S L+ G E V Q+ MG + R + RA+RAAY NP+RA+EYL +GIPE
Sbjct: 139 SALLMGPQGEQVVAQMESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHR 195
Query: 217 --------------QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP 262
TA PP A + N + AQ A AP G
Sbjct: 196 EAAPAPPATTTPSGSTAAPPTTAAVGDDEHINL-FEAAAQ---AGAPQLGGAGRGARAAG 251
Query: 263 QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQ 318
QGL G LDFLR++ FQ LR +VQ PQ ILQ++G NP L +LI ++Q
Sbjct: 252 QGLAPPAEGGNLGNLDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQ 311
Query: 319 TDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 378
FL+L++E ++ QL Q +TVT EER+AIERL +GF R V++ +FAC
Sbjct: 312 DQFLQLLSEDIDDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFAC 365
Query: 379 NKNEELAANYLLDHMHEFED 398
+KNEELAAN+L + E +D
Sbjct: 366 DKNEELAANFLFEQPDEGDD 385
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 187/415 (45%), Gaps = 106/415 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +S+TP
Sbjct: 56 LLKDYSDIKDGDKVIVI-------------------------------------SSKTPD 78
Query: 117 PTVA-PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVS-DVYGQAASNLVAGSNLEA 174
P+ P S P S P + AP P+P P+ +VS Y +S LV GS LE
Sbjct: 79 PSKHQDPNSQPSSTTTPTSKAPQPSPLDNSPHQPSSGHNVSQQTYETVSSKLVMGSELEQ 138
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G + +P + +
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTGNIPVSNMPNIDHQNVTA---- 191
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF----QALR 290
P G + G L +++ F QA++
Sbjct: 192 -------------------------------PEHGHSGGEDVLQMIQSHPMFEQLSQAVQ 220
Query: 291 TMVQANPQILQELGKQNPHLMRLIQEHQTDFLRLIN-------EPVEGGEGNVLGQLASA 343
+ Q Q+L+ LG+ +P L++ I + Q +F+ L+N +P E N
Sbjct: 221 SDPQLLQQLLESLGQTHPELLQTIIQRQDEFMELLNSGAGAEADPYSNTEHN-------- 272
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
P +++TP E E+IERLE +GF R V+E + AC+KNEELAANYLL++ H+F++
Sbjct: 273 -PNIISLTPVEMESIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFQE 326
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 130/262 (49%), Gaps = 80/262 (30%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+A + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL
Sbjct: 54 SAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL---------- 100
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
T++Q PA +G N L+FLR
Sbjct: 101 -----------------TESQVSEQPATEAGDNP---------------------LEFLR 122
Query: 282 NSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEP--------- 328
+ QFQ +R ++Q NP +L L G++NP L++ I HQ F++++NEP
Sbjct: 123 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 182
Query: 329 --VEGGEGNVLGQLASAMPQAVTVTPEEREAIER----------LEAMGFDRALVLEVFF 376
VEG E +G+ A M + VTP+E+EAIER L+A+GF +LV++ +F
Sbjct: 183 VDVEG-EVGAIGEEAPQM-NYIQVTPQEKEAIERGRGPAGRAPSLKALGFPESLVIQAYF 240
Query: 377 ACNKNEELAANYLLDHMHEFED 398
AC KNE LAAN+LL F+D
Sbjct: 241 ACEKNENLAANFLLS--QNFDD 260
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 180/439 (41%), Gaps = 90/439 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ + + K I + + D+ Q LI+ GK+LK+ T+
Sbjct: 2 VSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATIL 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + +N ++ M++K K + ASTV P S TT +T A
Sbjct: 59 NSGLKDNDHIIFMISKKKKKTEPASTVKVTE-----------PASV--TTNVETQAE--G 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S P + P PA + A A S+ A V G+ T+Q+I+
Sbjct: 104 TPNSDPSANATPEVPAATTSNAAAGDDTETTTSA-------ADPGFVVGTERNETIQRIM 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG + RE V ALRAA+NNP+RAVEYL GIPE +
Sbjct: 157 EMG---YQREEVEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQLQQTTIQTEGATSAN 213
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD------FLRNSQQFQALRTMVQ 294
+ PA DLF Q G+ A + D + ALR +V
Sbjct: 214 MELPAED-----------DLFAQAA--RGNQANQQSTDDTPPGSIGLTMEDLLALRQVVS 260
Query: 295 ANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE----------------------- 327
NP+ +L+ L + P L I + F+ ++ E
Sbjct: 261 GNPEALPPLLENLTTRYPQLREQIMANPEVFVSMLLEAVGDNLQHSLGNDLDGISELDQH 320
Query: 328 PVEGGEGNVLGQLASAM-------PQA---------VTVTPEEREAIERLEAMGFDRALV 371
P G V + SA+ P A +++T ++ +AI RL +GF+R+LV
Sbjct: 321 PTANTNGEVTAEHDSAIVTETNEAPAAGEQPSNNYNISLTEQDEQAIGRLCELGFERSLV 380
Query: 372 LEVFFACNKNEELAANYLL 390
++V+FAC+KNEE+AAN L
Sbjct: 381 VQVYFACDKNEEIAANMLF 399
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 184/462 (39%), Gaps = 113/462 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V + ++ M +K + S P +AQ S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKS-----KPEPKPEAQAXXGXAEXSS-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
E+A ++ PA A SS S G + VQ I+
Sbjct: 99 ------ENAAVESSSTSNXXSXPAQIXAENQESSTG-AXEFTESTFAIGRARQTAVQNIM 151
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG--------------------------- 213
MG ++RE V RAL AA+NNP+RAVEYL +G
Sbjct: 152 GMG---FEREQVERALTAAFNNPDRAVEYLLNGIPESHHQASAPAPPAPAAEPSAEAAXE 208
Query: 214 -----IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP------------NAN 256
+ E P + +AG + ++++P A N N
Sbjct: 209 KSXGXVDEXQXTAPKNASEGNTEAG---SSGKSEEPVKIAENVENTNATATTXQTPXNPN 265
Query: 257 PLDLFPQGLP-----NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQN 307
+LF + N G N+ G D++ +LR ++Q P+ +LQ++ N
Sbjct: 266 SQNLFERAAAXAQGQNTGENSQEG--DYMG------SLRELLQQRPEMAEIVLQQMAXSN 317
Query: 308 PHLMRLIQEHQTDFLRLINE------------PVEGGEGNVLGQLASAMPQA----VTVT 351
P L +IQ + F+R I P E EG+ A +A + VT
Sbjct: 318 PQLAEVIQRNPEAFMRYITSGDQDALAESLGIPKEYLEGSGXVDDAEDGEEANVPRIEVT 377
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 392
PEE AI RL +GFDR+LV++V+FAC+KNEE+AAN L DH
Sbjct: 378 PEENAAINRLCELGFDRSLVIQVYFACDKNEEMAANLLFSDH 419
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 41/262 (15%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 134 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 190
Query: 224 ARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNANPLDLF-----------PQGLPNMGSN 271
+A A P T A A AP+ P++LF P G GS
Sbjct: 191 QQAQARAPTSPTPAGNTGATATPANAPSGADE--PMNLFEAAAQAANRDRPSGGQRGGSA 248
Query: 272 AGA--------GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQT 319
GA +LDFLRN+ QFQ LR +VQ PQ ILQ++G NP L ++I ++
Sbjct: 249 PGATGGAALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPE 308
Query: 320 DFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFF 376
FL+L+ E + + +P QA++VT +EREAIERL +GF+R LV++ +F
Sbjct: 309 QFLQLLAEDADED---------APLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYF 359
Query: 377 ACNKNEELAANYLLDHMHEFED 398
AC+KNEELAAN+L D + +D
Sbjct: 360 ACDKNEELAANFLFDQPDDADD 381
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKV-SSSGASTVSA 89
+NKV+E+ F+VVML+KSKV S+G S+ A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQA 90
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 178/417 (42%), Gaps = 87/417 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ V KK + + D SQ LI+ GKVL+D ++E
Sbjct: 2 VSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSIE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++K K STV+ T+PT + + AP VA
Sbjct: 59 GCGLKDGDQVIFMISKKK------STVTQV---------------TEPTESKEVAAPEVA 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
V ES A APA + PV++ +D V GS V +I+
Sbjct: 98 ASAPVAESTET----ATEAAPAHSTTEGQQPVTASND------PGFVVGSQRNEAVDRIM 147
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V RALRAA+NNP+RAVEYL GIP+ +
Sbjct: 148 EMG---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQQQQQQPQVT----------QE 194
Query: 241 AQQPAAP----APTSGP--NANPLDLFPQGLPNMGSNAGAGTL-------DFLRNSQQFQ 287
AQ+P + A T+G + N DLF Q N ++ G +
Sbjct: 195 AQEPTSGSTEVAQTAGEQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGLTMEDLL 254
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
ALR +V NP+ +L+ L + P L I + F+ ++ E V G+ N+ G + S
Sbjct: 255 ALRQIVAGNPEALGPLLENLSTRYPQLREQILSNPEVFVSMLLEAV--GD-NLQGSMDSE 311
Query: 344 MPQA--------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
+++T + +AI RL +GF+R+LV++V+FAC+K
Sbjct: 312 FDNLGLTEGAEGDEGEESELAQPPISLTEADEQAISRLCELGFERSLVVQVYFACDK 368
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 28/214 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ PA + +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSASAPGNPAGEG-----------RPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P S P++ P+ P + G S+LV G N E VQ++
Sbjct: 108 ESPSSKPDANSQPSLPTVTTTQSTTTN-----------TLGFGESSLVTGENFERVVQEL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+ MG +++ VIRA+RA +NNP+RA EYL SG
Sbjct: 157 VSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQA------FPTSG 110
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 74/100 (74%), Gaps = 12/100 (12%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+
Sbjct: 5 STEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYT 64
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
G+P Q A ASA QA + PA QA PTSG
Sbjct: 65 GLPGQ------AEASAVVQALSVPAAVQA------FPTSG 92
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 184/428 (42%), Gaps = 88/428 (20%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + +T + PP + + TT P +
Sbjct: 64 DGDQVVFMVSQKKST---------------KTKVTEPPIAPESATT---------PGREN 99
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN--LVAGSNLEATVQQILDMG 183
A P + APA P + + ++AS V G+ T+++I++MG
Sbjct: 100 STEASPSTDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG 159
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 243
+ RE V RALRAA+NNP+RAVEYL GIPE P + +A A T A+Q
Sbjct: 160 ---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQ 216
Query: 244 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQFQ 287
PA DLF Q G NA +G L + +
Sbjct: 217 PAED-----------DLFAQAA--QGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLL 263
Query: 288 ALRTMVQANPQ----ILQELGKQNPH---------------LMRLIQEHQTDFLRLINEP 328
+LR +V NP+ +L+ + + P L+ + ++ D + ++
Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323
Query: 329 VEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 324 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 383
Query: 381 NEELAANY 388
+ Y
Sbjct: 384 KRRSCSKY 391
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 131/255 (51%), Gaps = 42/255 (16%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPP------V 223
E + I +M ++R + A+RAAYNNPERAVEYL +GIP +Q A
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAP 236
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 274
A A A A P A AQ + A G + P++LF +G++AG
Sbjct: 237 AAAPAAAPAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGA 295
Query: 275 -------GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLR 323
G LDFLRN+ QFQ +R +VQ PQ ILQ+LG NP L ++I ++ FL
Sbjct: 296 GAEAAGLGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL- 354
Query: 324 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 383
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EE
Sbjct: 355 -----------NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEE 403
Query: 384 LAANYLLDHMHEFED 398
LAAN+L D E +D
Sbjct: 404 LAANFLFDQGPEEDD 418
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
K+ E FVV ++ K K ++
Sbjct: 58 SYKIEEKGFVVCVVNKPKTTA 78
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 123/243 (50%), Gaps = 30/243 (12%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN+ QFQ +R +VQ PQ ILQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D E
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPE 375
Query: 396 FED 398
+D
Sbjct: 376 EDD 378
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 156 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 158 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
Query: 216 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 252
Q A ASA QA + PA QA PTSG
Sbjct: 218 GQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 123/243 (50%), Gaps = 30/243 (12%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 279
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN+ QFQ +R +VQ PQ ILQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D E
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPE 375
Query: 396 FED 398
+D
Sbjct: 376 EDD 378
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 130/271 (47%), Gaps = 60/271 (22%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 135
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 283
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 136 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 182
Query: 284 --------------QQFQALRTMVQANPQ----ILQELGKQNPH---------------L 310
+ +LR +V NP+ +L+ + + P L
Sbjct: 183 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 242
Query: 311 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 362
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 243 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 302
Query: 363 AMGFDRALVLEVFFACNKNEELAANYLL-DH 392
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 303 ELGFERDLVIQVYFACDKNEEAAANILFSDH 333
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 183/431 (42%), Gaps = 74/431 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K ++++ V D KK I + + SQ LI+ GKVL++ +T+
Sbjct: 2 VSITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTIG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K S+G A P + ++ + Q TVA
Sbjct: 59 DCGLKDGDQVIFMISKKK--STGTKVTEATPVAASTAADASATSVAAVAEPEQ---QTVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
Q+ + A P AP V SD V GS V++I+
Sbjct: 114 SEQATESNGNEEA---PQQEEAPQQGGQQEQVQVQSD------EGFVVGSQRNEAVERIM 164
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V RA+RAA+NNP+RAVEYL GIPE + +
Sbjct: 165 EMG---YERDEVNRAMRAAFNNPDRAVEYLLMGIPEHLQQQEQQQEQQ------QEQHVE 215
Query: 241 AQQPAAPAPTSGP---NANPLDLFPQGLPNMGSNA-----------------GAGTLDFL 280
+ + A T+ + +DLF Q G ++ G D L
Sbjct: 216 STEVATTEETNDNEDVDNGEVDLFTQAAQGNGDSSAAPRGAAGAAGGPPGSIGLTMEDLL 275
Query: 281 RNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 336
ALR +V NP+ +L+ L + P L I + F+ ++ E V V
Sbjct: 276 -------ALRQVVAGNPEALAPLLENLSIRYPQLREQILANPEVFVSMLLEAVGDNLQGV 328
Query: 337 LGQL--------------ASAMPQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
+G+ ASA Q V ++ E+ +AI RL +GF+R LV++V+FAC+
Sbjct: 329 MGEEFEGLAGGELGGNDDASAAGQEQHIVQLSEEDEQAISRLCELGFERNLVIQVYFACD 388
Query: 380 KNEELAANYLL 390
KNEE+AAN L
Sbjct: 389 KNEEIAANILF 399
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ + TTS+ + T + TP+P +AP P P P PA
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 143 PAPAPAPAPVS-------------------SVSDVYGQAASNLVAGSNLEATVQQILDMG 183
P AP +S S S+++ A S LV G + E V +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYL 210
++RE VI ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 16/226 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ ++ AP AQ + S TST ++ APT A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGS---TSTAAPPSNPPAAPTPA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE A + A A P SS + A+S LV G+ EA + +I+
Sbjct: 118 AVPIPPEEAKQEQS-------AEATEPQQPASSSGGNQGLDASSALVTGAEYEAMLTEIM 170
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPV 223
MG ++RE V+ ALRA++NNP RAVEYL +GIP Q + PPV
Sbjct: 171 SMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPV 213
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRL 313
++G L FLR QF +R +Q N P +LQ+LG++NP L+++
Sbjct: 351 SSGENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 27/244 (11%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 218
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 219 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 332 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 360
Query: 389 LLDH 392
L +
Sbjct: 361 LFEQ 364
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 194/455 (42%), Gaps = 87/455 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E + ++ M+ K+K T + P ++ T S++ +T+++ + + +
Sbjct: 58 SYKLKEGASIIFMINKTK------KTPTPVPETKSTTESTSQEQVQAQGSTNESTSSSTS 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN---LVAGSNLEATVQ 177
+ +A AA A + P QA SN GS EA++Q
Sbjct: 112 STTTTTAAAAAAAAGAASTGTTTTSEQQPE----------QAVSNESTFAVGSEREASIQ 161
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAGG 230
I++MG ++R V ALRAA+NNP RAVEYL +GIPE VP + G
Sbjct: 162 NIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQHPTPPVPVPAPVPTAPTG 218
Query: 231 QAGNPPAQTQAQQPAAPAPTSGP-----NANPLDLFPQGL-----PNMGSNAGAGTLDFL 280
Q QQ A G + +LF N G ++ GT +
Sbjct: 219 QQTERNTSETGQQGANEEHGDGDEEGEESTQHENLFEAAAAAAAATNQGDSSIGGTTSGV 278
Query: 281 RNS-----------------QQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQT 319
QQ Q LR +Q+NP+++Q +L NP + LI +
Sbjct: 279 GAGAGAGAGGEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLISQDPE 338
Query: 320 DFLRLINEPVEG--GEGNVLG-------------------QLASAMPQAVTVTPEEREAI 358
F+R+ + G G GN LG + + ++ ++ AI
Sbjct: 339 AFVRMF---LSGAPGSGNDLGFEFEDEGAGGAGGATTGGDEEEEEGTIRIQLSEQDNNAI 395
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 396 NRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 430
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 27/244 (11%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 218
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 219 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 332 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 360
Query: 389 LLDH 392
L +
Sbjct: 361 LFEQ 364
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 127/258 (49%), Gaps = 39/258 (15%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----TAVP 221
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------G 275
+ Q P ++ + P A+ DLF Q + G G G
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGGDSARAPG 251
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
T+ + +LR +V NP+ +L+ L + P L I + F+ ++ E V G
Sbjct: 252 TIGL--TMEDLLSLRQVVTGNPEALPPLLESLSTRYPELREQIMTNPEMFISMLLEAVGG 309
Query: 332 G--EGNVLG-----------------QLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
EG + G + A PQ + ++P+++EAI RL +GF+R LV+
Sbjct: 310 SLPEGIMEGDAGMEAGAEGALAGADVEGAEQAPQ-LEISPQDQEAISRLCELGFERTLVV 368
Query: 373 EVFFACNKNEELAANYLL 390
+V+FAC+KNEE+AAN L
Sbjct: 369 QVYFACDKNEEIAANMLF 386
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 27/244 (11%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 218
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 180 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 236
Query: 219 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 275
A +A + P A T++++P + A + G
Sbjct: 237 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 296
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 297 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 356
Query: 332 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 357 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 407
Query: 389 LLDH 392
L +
Sbjct: 408 LFEQ 411
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 192/422 (45%), Gaps = 68/422 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K + ++ + V D K + + + SQ LI+ GKVL+D TLE
Sbjct: 2 INITFKDFKKEKIPLALESTNTVLDAKTQLAQNKSCE---ESQIKLIYSGKVLQDAKTLE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K +++ + ++ A TT++ T+T +
Sbjct: 59 DCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAEVS--------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAA + PA PA A +S + ++ V GS + TV++I+
Sbjct: 110 -----------PAAASETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIM 158
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++RE V ALRAA+NNP+RAVEYL GIPE ARA+A Q P+ TQ
Sbjct: 159 EMG---YEREQVESALRAAFNNPDRAVEYLLMGIPENLQ----ARAAAP-QETAAPSITQ 210
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------QQFQALR 290
+ P DLF Q GSN G T + Q +LR
Sbjct: 211 DVTTTTASTEDAPAEE--DLFAQAA--QGSNTGPNTEGESEHHGPPGSIGLTVQDLLSLR 266
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV----------------- 329
++ NP+ +L+ L + P+L + + F+ ++ E V
Sbjct: 267 QVISGNPEALTSLLESLSVRYPNLREQMMNNPQAFISMLLEAVGDNLQGLEGLEGLGEEG 326
Query: 330 -EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
G+ A +P V +TPE+ +AI RL +GF+R+LV++V+FAC KNEE+AAN
Sbjct: 327 HIEEGELEEGEEAHPIPH-VELTPEDEQAISRLCELGFERSLVIQVYFACEKNEEVAANM 385
Query: 389 LL 390
L
Sbjct: 386 LF 387
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 165/400 (41%), Gaps = 109/400 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E+K +DK + + V+ ++ P LI+ G++++D +
Sbjct: 1 MKLTIRTLDQKTISLELK-DDKQNVLHLKQRLVELPEISQPVDSLQLIYSGRIMQDDRPI 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M KS + PP T Q
Sbjct: 60 SEYNIMEDRFIVLMTKKS-------------------VNAVEPPKKN--TEAEQK----- 93
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
ES P + PA P P+ AP Q++
Sbjct: 94 -------ESQQPKSGNTEQLRPAEPPRPSVAPDE-----------------------QRV 123
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
D+ +D V ALRA++N+PERA+EYL +GIP T VP V + QT
Sbjct: 124 RDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIP--THVPAVNQT-----------QT 170
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q AA A G A L++L F +R +++ NP++
Sbjct: 171 QTNANAADANLIG-------------------ETAERLNYLATDPHFAHVRDLIRQNPEL 211
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
L+ L + +P I+ +Q +F+ ++N P MP ++ EE
Sbjct: 212 LELVLTHLRESDPAAFEAIRNNQEEFISMLNAP---------------MPMTASLNTEEE 256
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
A+ERL A+GFDR +V+ V+ AC+KNEELAA+ L E
Sbjct: 257 AAVERLMALGFDRDVVVPVYLACDKNEELAADILFRQTDE 296
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 131/412 (31%), Positives = 179/412 (43%), Gaps = 100/412 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+ LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKI-----------------------------LKDDDTVQ 31
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + A+ + PA A +++ P + S T A
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQSATQAAAPP 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ S P+ A A A A N+EA
Sbjct: 92 ATPTPNRSTGTPSGLAMGSERAEAIA------------------------NMEA------ 121
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT------------AVPPVARASA 228
MG ++R + A+RAA+NNP+RAVEYL +GIPE P A A
Sbjct: 122 -MG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESIQQEQQQQRANPPQAAPAAAAPT 177
Query: 229 GGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
G G+ AQ+ APA P A QG G LDFLR++ QFQ
Sbjct: 178 GDDDGSVNLFDLAAQRRGAPASGGSPAAATAAAAAQG--------DLGNLDFLRHNAQFQ 229
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
LR +VQ PQ ILQ+LG NP L +LI + FL+L+ E +
Sbjct: 230 QLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDADDD---------VP 280
Query: 344 MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 281 LPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 332
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 135/420 (32%), Positives = 187/420 (44%), Gaps = 64/420 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V + +K P A T SS P+ TPA
Sbjct: 59 SYNIQEKDFLVCLPSKQ-------------PKAAASTASSQVPS---------TPAARAP 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
AP AA P P+PA A + S S L G E V Q+
Sbjct: 97 VSTPAAPPAPHAAAAPPPSVAPATPSPAGAAPAPSSGPAFGDPSALTMGPAAEGAVVQME 156
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ + A
Sbjct: 157 AMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDNIQEQQQQQQQAS------ETAPT 207
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----------------TLDFLRNSQ 284
PAAPA SG + L+LF G +L+FLR++
Sbjct: 208 GAAPAAPAAPSGGDEPHLNLFEAAAQAGGEGGRPRGAAGAGAGAAGGEALGSLEFLRSNP 267
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
FQ LR +VQ P ILQ++ NP + +I ++ F G L
Sbjct: 268 HFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF--------LQLLGEELEDE 319
Query: 341 ASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
A+P QA++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E E
Sbjct: 320 EGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPDEDE 379
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 118/425 (27%), Positives = 181/425 (42%), Gaps = 78/425 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+ + + V+ M++K K ++ A+ + A A+ + + SA TT ++T A A
Sbjct: 59 ESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSA-------TTNTETQAAGSA 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ A P AP P + V G TV +I+
Sbjct: 112 AETTATAPAQPSTTQAPVSTP-----------------------DFVVGQQRNETVDRIM 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R+ V RALRAA+NNP+RAVEYL GIPE AG + P Q Q
Sbjct: 149 EMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQ-------RAGARQQQPEQQAQ 198
Query: 241 AQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGA---------------GTLDFLRN 282
+ P DLF Q N + G++
Sbjct: 199 QESQPQQESQPQQATEPQEGEDLFAQAEQRTQGNTASAEGAAAADGAQGGVPGSIGL--T 256
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV--------- 329
+ ALR +V NP+ +L+ L + P L I + F+ ++ E V
Sbjct: 257 MEDLLALRQVVSGNPEALAPLLESLSSRYPQLREQIMSNPEVFVSMLLEAVGDNLQDAMT 316
Query: 330 --EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
E G+ A+ V +T + +AI RL +GF+RA+ ++V+FAC KNEE+AAN
Sbjct: 317 DLETGDDPEGAAAAAEGAFQVELTESDEQAITRLCELGFERAVAIQVYFACGKNEEIAAN 376
Query: 388 YLLDH 392
LL+
Sbjct: 377 MLLND 381
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 107/182 (58%), Gaps = 29/182 (15%)
Query: 153 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
S+ +++ +A SNLV G++ +A V +++ MG ++RE V+ ALRA++NNP+RAVEYL +
Sbjct: 76 STNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEYLLT 132
Query: 213 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP-NMGSN 271
GIP G+ P A A P P SG ++ P+ LP N GS+
Sbjct: 133 GIP--------------GRDPGPAAGLDAVVP----PVSGVHSAPIGGI--SLPANTGSS 172
Query: 272 -AGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTDFLRLIN 326
+G L FLR+ QF +R ++Q N P +LQE+G++NP L++ I HQ F++++N
Sbjct: 173 PSGGNPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLN 232
Query: 327 EP 328
EP
Sbjct: 233 EP 234
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEP 328
G L+FLRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEP
Sbjct: 46 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 105
Query: 329 VE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 380
V+ G + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 106 VQESGGQGGGGSGSGGVAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 165
Query: 381 NEELAANYLL 390
NE LAAN+LL
Sbjct: 166 NENLAANFLL 175
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 85/136 (62%), Gaps = 19/136 (13%)
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 329
L FLR+ QFQ +R ++Q NP +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 124 LAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 183
Query: 330 -------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 382
+ G N + Q P V V+P++REAIERL+A+GF +V++ +FAC KNE
Sbjct: 184 APGAAVEDSGAENPMPQ---PPPSVVQVSPQDREAIERLKALGFPEHMVIQAYFACEKNE 240
Query: 383 ELAANYLLDHMHEFED 398
LAAN+LL F+D
Sbjct: 241 NLAANFLLS--QNFDD 254
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 65 DFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 125/266 (46%), Gaps = 39/266 (14%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S+ VAG L + ++ ++ MG ++RE ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETA 220
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-----------PLDLFPQGLPNMGSN- 271
AS G A + P PA + PL+LF Q G N
Sbjct: 221 PPASGGPAATPAASNPAPAAPTTPAAAPAARSTTTSGTGGGASGPLNLFAQAAAQSGGNP 280
Query: 272 -----------------AGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHL 310
L+ L+NS FQ ++ NP +LQ +L + NP +
Sbjct: 281 STGAGADAGEGAGGGAGINPAALESLQNSPMFQNTLGAIRENPALLQPLIQQLAQSNPAI 340
Query: 311 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFD 367
+ + + +++ + + +P + +T EE EAI RLEA+GF
Sbjct: 341 AQQLTSNPELLYQILGGLGGDDQDDDGDGEGGGIPPGAHVINITQEEAEAIARLEALGFP 400
Query: 368 RALVLEVFFACNKNEELAANYLLDHM 393
R L +E +F C+KNEELAANYL +++
Sbjct: 401 RQLAIEAYFTCDKNEELAANYLFENV 426
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 187/447 (41%), Gaps = 98/447 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K A+T S P +++P+ Q+ A T
Sbjct: 60 GCKLKDGDQVIFMISKKK----------------AETRVSEPEPASEPSGGPQSEAST-- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + A P A V S ++ V GS TV++I+
Sbjct: 102 ---------GLETVTTPGVSAAVDPESTGAAVGS--------GASFVTGSARSQTVERIM 144
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAG-GQAGNPPA 237
+MG +DR V ALRAA+NNP+RAVEYL +GIPE Q + AR SA +G P
Sbjct: 145 EMG---YDRAQVEMALRAAFNNPDRAVEYLLTGIPEHLQNSSAFSARQSASVAASGVPET 201
Query: 238 QTQAQQPAA---------PAPTSGPNANPLDLFPQGLPNMGSN-----AGAGTLDFLRNS 283
AQ + + + + DLF Q N T ++S
Sbjct: 202 GATAQTGTETETGTGTGTASEVNDEHVHEDDLFAQAAAVGSENPTTGADATTTGTVSQDS 261
Query: 284 QQFQA----------LRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPV 329
Q LR ++ +P+ +L+ L ++ P L I + F+ ++ + V
Sbjct: 262 SPLQTIGLTFEDLVQLRGVINGDPEALPPLLESLSERYPELREQIMSNPEMFISMLLQAV 321
Query: 330 EG----------------------GEGNVLG----QLASAMPQAVTVTPEEREAIERLEA 363
G G+G+ A A + ++++ E+ IERL
Sbjct: 322 GGALPSEALDDASAYQADSEAIAEGDGSTASANQDTAADAQNELLSLSEEDLTTIERLCE 381
Query: 364 MGFDRALVLEVFFACNKNEELAANYLL 390
+GF+R LV++++ AC+KNEE+ AN L
Sbjct: 382 LGFERDLVIQIYVACDKNEEVTANMLF 408
>gi|242079217|ref|XP_002444377.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
gi|241940727|gb|EES13872.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
Length = 137
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 304 GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLE 362
G+QN + +LIQE+Q +FLR+IN+P E ++ Q A M + + V PEE EAI+RLE
Sbjct: 45 GEQNLQITQLIQENQAEFLRVINDPAGRAEESLPDQFGGAGMHRTIAVKPEENEAIQRLE 104
Query: 363 AMGFDRALVLEVFFACNKNEELAANYLLDHM 393
M FDR LVLEVFFACNK+E LAANYLLDHM
Sbjct: 105 QMTFDRDLVLEVFFACNKDEHLAANYLLDHM 135
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 165/400 (41%), Gaps = 71/400 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + FVVVM N+ TT+ A P ++ T +
Sbjct: 60 SHYSLDDKKFVVVM-------------------NKKPTTAPAEPAASSSATAPAESKSST 100
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A ES A A A +++ VQ+I
Sbjct: 101 AKS----ESGAQSEATAAASKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQRI 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+MG + E AL NNP+RAVEYL S I + +GG + T
Sbjct: 157 TEMG---YSLEEARIALEICDNNPDRAVEYLLSEIATSSMGGGGGGGGSGGGSAAVSGGT 213
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP-- 297
+ A FLR F ++ ++Q +P
Sbjct: 214 TQESRLA--------------------------------FLREHPTFLEMKRLLQEDPSL 241
Query: 298 --QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-----LGQLASAMPQAVTV 350
+LQ++ NP LMR+I E+Q +FL LINE E G + L A+AM ++T
Sbjct: 242 LPHLLQKIQSSNPDLMRIISENQVEFLSLINEGTEEPTGRMGVPRELETTAAAMVDSLTQ 301
Query: 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + +AI+RL+A+GF LV++ + AC +NE AA++L+
Sbjct: 302 S--DMDAIDRLKALGFPEHLVIQAYIACERNEYQAADFLV 339
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 158/385 (41%), Gaps = 92/385 (23%)
Query: 46 LIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
LI+ GKVL+D +L+E+ + + V+ M++ + + Q+ ++ P S
Sbjct: 44 LIYSGKVLQDSKSLQESGLKDGDQVIFMIS--------KKKSTTTTVTEPQSKETSAPVS 95
Query: 106 TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASN 165
P S+TPA A Q S P
Sbjct: 96 QSPAPQSETPA---AETQQEASSTTDPG-------------------------------- 120
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
V G+ V++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE +
Sbjct: 121 FVVGAQRNEAVERIMEMG---YEREQVDRALRAAFNNPDRAVEYLLMGIPENLQQQQQPQ 177
Query: 226 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNMG 269
A Q + + P +G A DLF Q
Sbjct: 178 QQAEQPQEQEEEQQETESNTEP---TGEAAGE-DLFAQAAQRGGAPGGETGGEGTTGGPP 233
Query: 270 SNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLI 325
+ G D L ALR +V NP+ +L+ L + P L I + F+ ++
Sbjct: 234 GSIGLTMEDLL-------ALRQVVSGNPEALAPLLESLSNRFPQLREQIVANPEVFVSML 286
Query: 326 NEPV------------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 373
E V EG EG + V V+ + +AI RL +GF+RALV++
Sbjct: 287 LEAVGENLEDAMTGMDEGTEGGAVAAGQQGEEVNVEVSESDEQAIARLCELGFERALVMQ 346
Query: 374 VFFACNKNEELAANYLLDHMHEFED 398
V+FAC KNEE+AAN L +EF D
Sbjct: 347 VYFACGKNEEIAANMLF---NEFGD 368
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 186/433 (42%), Gaps = 140/433 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA 95
K+L++ T+E + E FVV M++K K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------------- 100
Query: 96 QTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSS- 154
T AP T P+ PPA PAPA PA APAP ++
Sbjct: 101 --TQPAPSTPAGPSQ--------------------PPATPAPAQTSTPAAPSAPAPATND 138
Query: 155 -------VSDVYGQAA-----SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
S G AA S L+ GS EA VQ++ MG + R + RA+RAA+ +
Sbjct: 139 PSAPPATPSPAGGDAAAFNNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFH 195
Query: 203 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNA 255
P+RA+EYL +GIP+ T P AR +QP+APA P++ P A
Sbjct: 196 PDRAIEYLLNGIPD-TPEQPAAR----------------EQPSAPAQSNVPVPPSNQPAA 238
Query: 256 N-----PLDLFPQGLPNMGSNAGAGT------------------LDFLRNSQQFQALRTM 292
N P++LF GT LDFLRN+ FQ LR +
Sbjct: 239 NAEPDEPINLFEAAAQAAQGGGARGTRTAGASLGGAAGGEGLSNLDFLRNNPHFQQLRQL 298
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 348
VQ P ILQ+LG NP L +LI ++Q FL+L++E +E QL +
Sbjct: 299 VQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQFLQLLSEDIEDD-----TQLPPGT-HTI 352
Query: 349 TVTPEEREAIERL 361
+VT EER+AIER+
Sbjct: 353 SVTEEERDAIERV 365
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 44/242 (18%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 221
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG IP + A
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSGHIPSRPAFE 178
Query: 222 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 281
+ Q G + N+G G L L
Sbjct: 179 QPPQQPQQPQQGGVLGEEGV------------------------GNLG---GLEELQQLA 211
Query: 282 NSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
+ QFQ + ++ NP +LQ +L + NP L L+Q++ FL+L+ + GGE +
Sbjct: 212 QNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQAT-GGEQCIF 270
Query: 338 GQ--------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
A+ VTPEE+ I+ + ++GFD+ LE + +C+KN+ELA NYL
Sbjct: 271 FDNVILIFFFFVEVSRNAIQVTPEEKADIDEIVSLGFDKNDALEAYISCDKNKELAINYL 330
Query: 390 LD 391
D
Sbjct: 331 FD 332
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 124/280 (44%), Gaps = 54/280 (19%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQ 315
G + L + QQ Q LR +Q+NP+++Q +L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 316 EHQTDFLRLINEPVEG--GEGNVLG-----------------QLASAMPQA---VTVTPE 353
+ F+R+ + G G GN LG Q + ++ +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 124/280 (44%), Gaps = 54/280 (19%)
Query: 162 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 219 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 273
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 274 A--------------GTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQ 315
G + L + QQ Q LR +Q+NP+++Q +L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 316 EHQTDFLRLINEPVEG--GEGNVLG-----------------QLASAMPQA---VTVTPE 353
+ F+R+ + G G GN LG Q + ++ +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++ F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLE
Sbjct: 45 LRGFEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLE 103
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E++ VV+ML+K
Sbjct: 104 ENKVVEDNSVVIMLSK 119
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 179/407 (43%), Gaps = 76/407 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTKSKV----SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ + E++ +V + K V S SG +APA P
Sbjct: 56 QLGIGEDTVIVYVGKKQSVQQLASKSGGCASPSAPAE-------------GPAKGELNEN 102
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P VA SVP P P+ A APA P+ PAPA + SV A
Sbjct: 103 PGVAGASSVPVDVPAPSPSAQAPATTQQPSGPAPASLRSVD----------------PAL 146
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQA 232
+ I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G+A
Sbjct: 147 IDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRA 204
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
P A T P + A + G ++ L +P++ DF R++
Sbjct: 205 AVPSAGT----PPSDAGSGGTQSD-LRRALSAIPHID--------DF----------RSL 241
Query: 293 VQANPQILQELGKQ----NPHLMRLIQEHQTDFLRLI--NEPVEGGEGNVLGQLASAMPQ 346
+Q NPQ L Q P + L Q+ +F R + + + ++ + +
Sbjct: 242 LQNNPQAFSALAGQLLENFPQVGELAQQDPEEFARFMMAGSVPDNADQTLVTAGETEVDD 301
Query: 347 AVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAANYLL 390
A + E+R A+ RL +G + E + C + E+ AA++LL
Sbjct: 302 AQPLGEEDRAAVNRLVLLGEGAWGEREATEAYRMCGRREDAAAHFLL 348
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 350 DNEVSEDGFLVVMLSKIWISN 370
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 21/214 (9%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 62
Query: 82 SGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAP 139
+ A T + PA TSS P Q + AP P P S + PAPA
Sbjct: 63 TPAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPAS 122
Query: 140 A---PAPAPAPAPAPVSSV-------------SDVYGQAASNLVAGSNLEATVQQILDMG 183
A PA PA PV++ S+++ A S LV G + E V +I+ MG
Sbjct: 123 ATKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 182
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
++RE VI ALRA++NNP+RAVEYL I +
Sbjct: 183 ---YEREQVIAALRASFNNPDRAVEYLLMQISQH 213
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 309 HLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIE 359
+L+ I +HQ F++++NEPV+ G + + S + VTP+E+EAIE
Sbjct: 205 YLLMQISQHQEHFIQMLNEPVQEAGGQGGGGGSGSGGIAEAGSGHMNYIQVTPQEKEAIE 264
Query: 360 RLEAMGFDRALVLEVFFACNKNEELAANYLL 390
RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 265 RLKALGFPEGLVIQAYFACEKNENLAANFLL 295
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 631 DNEVSEDGFLVVMLSKIWISN 651
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 332 DNEVSEDGFLVVMLSKIWISN 352
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 120/261 (45%), Gaps = 37/261 (14%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI------PEQ 217
S G+ EAT+Q I++MG ++R V ALRAA+NNP RAVEYL +GI PEQ
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
P A + G + + G + N LF + G
Sbjct: 138 PVAPVAPVAQSEAPVGESTTTSAHDEEDDDEHEGGQHEN---LFEAAAAAAAAQEGGAHA 194
Query: 278 DFLR------------NSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDF 321
+ QQ Q LR +Q+NP+++Q +L NP + LIQ+ F
Sbjct: 195 ATAGGDAASAGGAGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAF 254
Query: 322 LRL--------INEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 372
+R + +EG E G G+ + ++ +++ AI RL +GF+R LV+
Sbjct: 255 IRTFLGAGGEDLGFEIEGDESGFTGGEAGEEGTVRIQLSEQDQSAINRLCELGFERDLVI 314
Query: 373 EVFFACNKNEELAANYLLDHM 393
+V+ AC+KNEE+AA+ L M
Sbjct: 315 QVYLACDKNEEVAADILFRDM 335
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 608 DNEVSEDGFLVVMLSKIWISN 628
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 33/238 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K + + A S A A + S+ T +P ++ PTV
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPAPVSSTPAAEAAASASTGDSTKVEPAGST----PTV- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PAAP A AP S S GS E T+Q I+
Sbjct: 113 -----------PAAPTSGAATNIEGESAPTETSE---------STFALGSERETTIQNIM 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 236
+MG ++R V ALRAA+NNP RAVEYL SGIPE P PVA A+ G +G P
Sbjct: 153 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGAAP 207
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 132/263 (50%), Gaps = 46/263 (17%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L G +A V + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 133 SALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAAFFNPDRAVEYLLNGIPASAEQEQR 189
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA--NPLDLFPQG----------------- 264
A A+ A N PA Q QP A +G P++LF
Sbjct: 190 AAATPQRPASNQPAPQQQAQPPAQTGNTGATGGDEPVNLFEAAAQAGQRGGVGGNRGTGD 249
Query: 265 --------LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMR 312
G A A LDFLRN+ QFQ LR +VQ P ILQ++ NP L +
Sbjct: 250 LAAALGGGQGGQGGQATANELDFLRNNPQFQQLRQLVQQQPAMLEPILQQVAAGNPQLAQ 309
Query: 313 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRA 369
+I ++ F++L+ E + +V A+P Q + VT EEREAIERL +GF+R
Sbjct: 310 MITQNPEQFMQLL---AEDADDDV------ALPPGAQQIAVTEEEREAIERLCRLGFERD 360
Query: 370 LVLEVFFACNKNEELAANYLLDH 392
L ++ +FAC+KNEELAAN+L D
Sbjct: 361 LAIQAYFACDKNEELAANFLFDQ 383
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K T + P SS P +T+ T ++ T T
Sbjct: 58 ECKLKEGASIIFMISKAK------ETPTPVPG------SSVP--ATEATASASTGDSTKV 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + P APAPA A A A SS + S GS E T+Q I+
Sbjct: 104 EP-----AGSTPTAPAPASETATNAEGATASTSSTGPAE-TSESTFALGSERETTIQNIM 157
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+MG ++R V ALRAA+NNP RAVEYL SGIPE P
Sbjct: 158 EMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRP 195
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 127/275 (46%), Gaps = 60/275 (21%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ------ 217
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 146 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 202
Query: 218 ------------------------------TAVPPVARASAGGQAGNPPAQTQA---QQP 244
+ PP ASAGG A N A +A +
Sbjct: 203 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDR 259
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----IL 300
PA P P G P + + Q A+R MVQ NP +L
Sbjct: 260 GVPAAAGAPG------LP-GAPGLPGAGAGMPGG-MGGGDQLSAIRQMVQQNPAMIQPLL 311
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 360
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 312 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAVER 369
Query: 361 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 370 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 404
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 126/244 (51%), Gaps = 43/244 (17%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E + I +M ++R + A+RAA+ NP+RAVEYL +GIPE Q+
Sbjct: 144 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPEHLQ-----------QS 192
Query: 233 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGA----------------G 275
+ P Q A+ A N N DL Q G+ +G+ G
Sbjct: 193 ASAPRQAAQTAAASSAGADDDSNVNLFDLAAQAGRGSGARSGSGADVGTGAAAAAGQDLG 252
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
L++LR + QFQ LR +VQ PQ ILQ+LG NP L +LI ++ FL L++E G
Sbjct: 253 NLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGASNPQLAQLIAQNPDQFLSLLSES--G 310
Query: 332 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
G+ + + +P ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN+
Sbjct: 311 GDDD------APLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANF 364
Query: 389 LLDH 392
L D
Sbjct: 365 LFDQ 368
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 127/275 (46%), Gaps = 60/275 (21%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ------ 217
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 144 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 200
Query: 218 ------------------------------TAVPPVARASAGGQAGNPPAQTQA---QQP 244
+ PP ASAGG A N A +A +
Sbjct: 201 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDR 257
Query: 245 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----IL 300
PA P P G P + + Q A+R MVQ NP +L
Sbjct: 258 GVPAAAGAPG------LP-GAPGLPGAGAGMPGG-MGGGDQLSAIRQMVQQNPAMIQPLL 309
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 360
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 310 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVMR--VNLTQEEAAAVER 367
Query: 361 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 368 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 402
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L D
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILND----- 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ A + LT + ++ A + PA T S P T+T P +T +P
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPAPAVPT--SEPTTTTAPKEEEKTDSP--- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PE+ P + P+ + P+ ++ A S LV G + E V +I+
Sbjct: 111 -----PETMSPSSTECSVPSDSSRPS-----------LFVDATSALVTGQSYENMVTEIM 154
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++RE VI ALRA++NNP+RAVEYL GIP GQA P QT
Sbjct: 155 SMG---YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQTL 201
Query: 241 AQQPAAP 247
A P P
Sbjct: 202 ASTPTQP 208
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 237 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 285
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 158/367 (43%), Gaps = 86/367 (23%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK-----------------------------SKVSSSGASTVSAAPANQAQTTSSAPP 103
++ + + + + AAPA + SAP
Sbjct: 73 LVARPEAATTAAPATATATATAGQSHPATAALAGAGAPARGPALPAAPATSTR-AKSAPA 131
Query: 104 TSTQPTTTSQTPAPTVAPPQSVP------------ESAPPPAAPAPAPAPAPAPAPAPAP 151
TST+ + + + + + A PP AP+P P A A P+
Sbjct: 132 TSTRAKSAPASVSASSTASAQPAPAGAPASPQAAGQQAGPPGAPSPTPDDAIA---GPSS 188
Query: 152 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211
+ S+ QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 189 RAQPSE---QAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYLL 242
Query: 212 SGIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLP 266
G+P A PP A +S G++ A A A TSG +PLD+
Sbjct: 243 MGLPGDRASAAEVEPPQAGSSGAGRSSAVVAD-------AGATTSGSGGHPLDV------ 289
Query: 267 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFL 322
L N+ +FQ LR ++Q P +LQ + Q+P L R +++Q +
Sbjct: 290 -------------LWNAPEFQLLRQILQYFPSLLPGVLQRICPQDPLLRRQFRQYQDYLV 336
Query: 323 RLINEPV 329
++ P+
Sbjct: 337 HMLTAPM 343
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 27/217 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT-TTSQTPAPTV 119
K+ E F+VVM++K K AAPA A T+ +A P +P +TS + P+
Sbjct: 58 ACKIKEKDFLVVMVSKPK----------AAPA--ATTSKTATPEPAKPVASTSSSAVPSE 105
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
+ P A A A ++ + +G S G+ L+ V+ +
Sbjct: 106 P-------AVVPAPAEPVAAPAPVPAATEQPAAAAAAPAWGD-QSAFFTGAALQGAVENM 157
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG ++R V+RAL+AAYNNP+RAVEYL SGIP+
Sbjct: 158 MEMG---FERAQVMRALKAAYNNPDRAVEYLMSGIPD 191
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 128/258 (49%), Gaps = 44/258 (17%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 223
S L GS E Q+ MG + R + RA+RAA+ NP+RA+EYL +GIP+ +
Sbjct: 139 SALTMGSAAEGAAAQMEAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----I 190
Query: 224 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------- 275
+ + PA T A APA SG + +LF G G
Sbjct: 191 QEQQQQQRQASEPASTGA----APAAPSGGDEPHFNLFEAAAQAGGEGGGRSRGVAGAGA 246
Query: 276 ---------TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFL 322
+L+FLR++ FQ LR +VQ P ILQ++ NP + +I ++ FL
Sbjct: 247 GTAGGEALGSLEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQFL 306
Query: 323 RLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 379
+L+ L A+P QA++VT EER+AIERL +GF R V++ +FAC+
Sbjct: 307 QLLG--------EELEDEEGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACD 358
Query: 380 KNEELAANYLLDHMHEFE 397
KNEELAAN+L D E E
Sbjct: 359 KNEELAANFLFDQPEEDE 376
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 96/193 (49%), Gaps = 39/193 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK K+
Sbjct: 1 VKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKL--- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
PA A ++ S P T QT T P
Sbjct: 57 -------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSNEP-------------------- 89
Query: 143 PAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 202
PA V+S + +GQA S L+ G +++ I+DMG + +E V RALRA++NN
Sbjct: 90 ----PASENVNSGAS-FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNN 141
Query: 203 PERAVEYLYSGIP 215
P+RAVEYL +GIP
Sbjct: 142 PDRAVEYLLNGIP 154
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 98/166 (59%), Gaps = 32/166 (19%)
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANPQ- 298
++ PA P+P G G AG+ G+L+FLRN+ FQ LR +VQ PQ
Sbjct: 112 SETPATPSPAGGA---------------GETAGSLGSLEFLRNNPHFQQLRQLVQQQPQM 156
Query: 299 ---ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 352
ILQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 157 LEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGTQSISVTE 207
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 208 EERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 253
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 16/122 (13%)
Query: 285 QFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPV----------E 330
QFQ +R +VQANP Q++Q++G N L+RLIQE++ FL +N P+ E
Sbjct: 26 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 85
Query: 331 GGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
E G + P+ + T+T EER AIERL+A+GF LV++ ++AC KNE+ AAN+
Sbjct: 86 SSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQAYYACEKNEDAAANF 145
Query: 389 LL 390
LL
Sbjct: 146 LL 147
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 131/254 (51%), Gaps = 27/254 (10%)
Query: 160 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 219
G + ++G+ + VQ +++MG + +E V+RA+RA++NNP+RAV+YL +GIP
Sbjct: 136 GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRASFNNPDRAVDYLMNGIPAHLE 192
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLPNMGSNA------ 272
A+ AG PA A APAP AN P +LF
Sbjct: 193 AEAAGPAAPAPAAGGAPAAAAAPAAQAPAPAPAAPANQPQNLFQLAQQQQQGGGGAGAGG 252
Query: 273 ----GAGTLDFLRNSQQFQALRTMVQANPQILQELGKQ----NPHLMRLIQEHQTDFLRL 324
G ++ LRN+ Q A+R + NPQ Q L +Q NP + ++I D L
Sbjct: 253 PTLPGGLNIETLRNNPQIAAIRQAMAQNPQAAQALIQQLAQQNPQIAQIIGS-DPDLLTN 311
Query: 325 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
+ P GEG++ V +TPEE AIERL+ +GF R +V++ +FAC+KNEEL
Sbjct: 312 LFLP---GEGDI-----PPGATVVNITPEENAAIERLQGLGFPREVVIQAYFACDKNEEL 363
Query: 385 AANYLLDHMHEFED 398
AANYL +H + +D
Sbjct: 364 AANYLFEHGFDDDD 377
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Query: 300 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAI 358
L+E+ KQNP L ++I+ + F+ ++N+ E E N L Q + Q + VT + EAI
Sbjct: 79 LEEMEKQNPPLFQMIRHNSAGFVPVLNK--ESFERDNELAQPEEDLLQ-LQVTAVDDEAI 135
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394
RLEAMGF+R +VLEVF ACNKNE+LAAN+LLDH+H
Sbjct: 136 NRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 43/227 (18%)
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
+ +L + G +DRE I ALRAA+ NP+RAVE+L +G+P+ A
Sbjct: 131 ENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAA----------------- 173
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
P GP Q + N+ + G L+ L N Q +R ++Q N
Sbjct: 174 ---------DQEPDLGP--------EQNIDNVDED-GNDDLNMLANMPQLAEIRALIQQN 215
Query: 297 PQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ--AVTV 350
P+ +LQ+L NP L++ IQ +Q F+ L+N +G P+ + +
Sbjct: 216 PEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHL 275
Query: 351 TPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 395
+PEE AIER++A+ + A+V+E +FAC+KNEE A N++ ++ E
Sbjct: 276 SPEEAAAIERIKAIVVNAPEAVVVEAYFACDKNEEAAINFIFSNLDE 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA 89
E + FVVVML+K KV+ S+ A
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVA 90
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A P A+
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA--PSMDAT----- 168
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
P PA G P +L + L FL ++ F LR +
Sbjct: 169 -----------PDEPAGGEGEAVVPQEL-----------SEDSPLYFLASNPSFLQLRQL 206
Query: 293 VQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 347
VQ P +L Q++ NP L+ LI E+Q DF L+N E G + G +A
Sbjct: 207 VQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLNAEDENGGAPMPGAGGAAGAGGS 266
Query: 348 ----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
V +T EE A+ERL +GFDR L L+ + AC K+E +AAN+LL
Sbjct: 267 GFPGVQLTQEEMAAVERLSQLGFDRNLALQAYIACEKDENMAANWLL 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVM 73
E F+VVM
Sbjct: 60 SANFQEKDFLVVM 72
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 167/382 (43%), Gaps = 71/382 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++ P QA+T SS PTS T+P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 111 TSQTPAPT-VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ AP + P+ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGAPGGITEPRQGAE--PPPSEEAPSQGLA---------------LHGVDPT----- 153
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 345
R++VQANP+ ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 247 RSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPP 306
Query: 346 QAVTV--TPEEREAIERLEAMG 365
+V++ EER AI+RL +G
Sbjct: 307 DSVSIPLREEERVAIQRLVELG 328
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 38/258 (14%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG----I 214
Y S L+ G L+ + I MG ++RE V +A+ AYNNP A++YL +G I
Sbjct: 1 YSNPESILLTGDKLKEAIDNICAMG---FERELVQKAMVLAYNNPNVAIDYLTNGFQDII 57
Query: 215 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 274
E + + S NP + + + N N LD +M N+ A
Sbjct: 58 DEGHDISDIKDPSE-----NPNDRDENYSNLSNLLM---NYNLLD--ENERQDMSVNSEA 107
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLR-LINEPV 329
LRNS F +R +NPQ IL+ +G+ +P L+ I+E+Q +FL L N
Sbjct: 108 -----LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDT 162
Query: 330 EGGEGNVL---GQLASAMPQAV--------TVTPEEREAIERLEAMGFDRALVLEVFFAC 378
+ N L + A Q ++ E E++ +LE++GF + + LE F AC
Sbjct: 163 DNNAENDLIPNYEYADEANQNTDNFNIPIASLNESEMESVRKLESLGFPKHVALEAFIAC 222
Query: 379 NKNEELAANYLLDHMHEF 396
+KNEE+AANYL ++M+++
Sbjct: 223 DKNEEMAANYLFENMNDY 240
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 24/216 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K V+ PA A T++S TS+ + PAP
Sbjct: 58 SCEIKEKDFLVLMVSKPK-------NVTNLPA--ASTSTSIAATSSPAPVPAPAPAPQPV 108
Query: 121 PPQSVPESAPPPAAPAPAP---APAPA-PAPAPAPVSSVSDVYGQAASNLVAGSNLEATV 176
SAP PA P PA A P AP + +D +++ + G L++T+
Sbjct: 109 SEPPSVPSAPSPAPQPPNAPILTPAQAQPIAAPTTEQAFND-----SNSFLTGEALQSTI 163
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212
Q +++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 164 QNMMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 162/404 (40%), Gaps = 120/404 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ +V +K+ + + PA LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEV-AMPAENLQLIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE+ +V+M K KV S +P VA
Sbjct: 60 EYRIAEDKIIVLM-GKKKVDKS-------------------------------SPEEKVA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PP A P P+ AP +D + V ++
Sbjct: 88 PT--------PPLAAGPNVLRTEDVVPSLAP----NDQW----------------VSDLM 119
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT- 239
MG G E V ALRA++N+PERA+EYL +GIP++ S G A P QT
Sbjct: 120 SMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVV-------SEQGLAAIPSVQTS 169
Query: 240 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
Q QQ A L+ R +R M+ NP+
Sbjct: 170 DQLQQLMA-----------------------------DLNITR-------MREMINQNPE 193
Query: 299 ILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
++ L + +P + Q +Q + + +I+ GG ++ +T+T EE
Sbjct: 194 LIHRLMNRLAETDPATFEVFQRNQEELMNMIS----GGASRTPNEIEHL---QITLTAEE 246
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 247 TAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRD 290
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 166/395 (42%), Gaps = 118/395 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E++ +DK ++ VQ ++ P LI+ G++++D L
Sbjct: 1 MKLSIRTLDQKTISLELQ-DDKQKVIQLKQRLVQLPEITQPVESLQLIYGGRIMQDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E+ F+V+M +S AN V
Sbjct: 60 ADYNIKEDRFIVLMTKRS--------------AN-------------------------V 80
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P+S P P PA P P+ P E V+ +
Sbjct: 81 QEPESEPRQEHHPEQIV-QPAEPPRPSVTPD----------------------EQRVRDL 117
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG ++ + V AL A++N+PERA+EYL +GIP S+ A N T
Sbjct: 118 MLMG---YEEQDVRAALSASFNHPERAIEYLITGIP-----------SSHVTAMNGTTTT 163
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
++PA +S + A L++L +F +R +++ NP++
Sbjct: 164 -----SSPAESSVISET-----------------AEHLNYLATDPRFAHVRDLIRQNPEL 201
Query: 300 LQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 355
L+ L + +P I+ +Q +F+ ++NEP ++ G L+ EE
Sbjct: 202 LELVLTHLRESDPAAFEAIRSNQEEFISMLNEPT----AHLTGSLSH----------EEE 247
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
A+ERL A+GFDR +VL ++ AC+KNEEL A+ L
Sbjct: 248 AAVERLMALGFDRDVVLPIYLACDKNEELTADILF 282
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 164/381 (43%), Gaps = 69/381 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++AP Q +T SS PTS T P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAITDPAT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
S +S + PPP+ AP+ A ++G +
Sbjct: 116 -SGAGGAPGGIAESRQGAEPPPSEAAPSQGLA---------------LHGIDPT------ 153
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 ----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL----------- 196
Query: 231 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 290
Q N PA P+ +S ++ D + ++ + + L QF +R
Sbjct: 197 QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIR 247
Query: 291 TMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 346
++VQANP+ ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 248 SIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGVDVPPD 307
Query: 347 AVTV--TPEEREAIERLEAMG 365
+V++ EER A++RL +G
Sbjct: 308 SVSIPLREEERVAVQRLVELG 328
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 168/399 (42%), Gaps = 92/399 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDELPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+AE+ F+V+M K KV + P +T S+A T + P+ T A + A
Sbjct: 60 EYKIAEDKFLVLM-GKQKVQQVTKVELEKKPK---ETASAATGTGSTPS--GDTGAESYA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S+ P E VQ+++
Sbjct: 114 TGGGNPTSSVAPN---------------------------------------EEMVQRLM 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++ V AL A++N+PE A+EYL + IP + +A G A
Sbjct: 135 GMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSE---------AASGTAS------- 175
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
P +P+ A ++L P L + +F LR M+ NP
Sbjct: 176 ---PVCVSPSVAEMA--VNLAP-----------------LMSDPRFAQLREMILQNPDQL 213
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
IL ++ NP + ++ H +F+ L+N + + + Q A + Q +T E
Sbjct: 214 EAILGQMSGSNPEVFEGLRNHHGEFVDLLNYDLSLSDDDEFPQQADS-AQQTPLTAAEAA 272
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 273 AVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 311
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 115/456 (25%), Positives = 192/456 (42%), Gaps = 82/456 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K + S + + + + T +A P ++S T
Sbjct: 60 ACKLKDGDQVIFMISKKKTGTL-MSPAATTTSTETKVTEAAAPGIRAVESSSDKAKKTAG 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P+ +A +A A A A P S+ D V GS T+++I+
Sbjct: 119 APEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPD------HGFVTGSQRNETIERIM 172
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
+MG ++R V ALRAA+NNP+RAVEYL GIPE P S G A
Sbjct: 173 EMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAPQPAGS-----GVVAASQS 224
Query: 241 AQQPAAPAPT---------------SGPNANPLDLFPQ-GLPNMGSNAGA------GTLD 278
+A APT G +A+ +LF Q G AG GTL
Sbjct: 225 MDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESGDTAGVTEASATGTLS 284
Query: 279 FLRNSQQ--------FQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLIN 326
+ Q LR ++ +P+ +L+ L + P + I + F+ ++
Sbjct: 285 HGSSPLQTIGLTFEDLMQLRGVINGDPEALPPLLESLSDRYPEVREQIMGNPEMFISMLL 344
Query: 327 EPV-------------------EGGEGNV-----------LGQLASAMPQAVTVTPEERE 356
+ V EG +GN + ++ A + +T ++
Sbjct: 345 QAVGGAIPSDSLDDAMSFRTEGEGEDGNTHANSEANPDGAVVSVSEAAQDRLQLTSDDIT 404
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
AI+RL +GFDR LV++V+ AC+KNE++ A+ L ++
Sbjct: 405 AIDRLCELGFDRDLVVQVYVACDKNEDITADMLFNN 440
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 16/131 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G+L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 258 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 317
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 318 D---------ETQLPPGTQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 368
Query: 388 YLLDHMHEFED 398
+L D E ED
Sbjct: 369 FLFDQPDENED 379
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 16/123 (13%)
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LDFLRN+ QFQ LR +VQ P IL +G NP L +LI ++ FL+L++E + G
Sbjct: 314 LDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSE--DAG 371
Query: 333 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ + +P QA++VT EER AIERL A+GF R L ++ + AC+KNEELAAN+L
Sbjct: 372 DD-------APLPPGAQAISVTEEERAAIERLCALGFPRDLAIQAYIACDKNEELAANFL 424
Query: 390 LDH 392
+
Sbjct: 425 FEQ 427
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 16/131 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G+L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 257 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 316
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 317 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 367
Query: 388 YLLDHMHEFED 398
+L D E ED
Sbjct: 368 FLFDQPDENED 378
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 16/131 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G+L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 256 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 315
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 316 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 366
Query: 388 YLLDHMHEFED 398
+L D E ED
Sbjct: 367 FLFDQPDENED 377
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+ V++ + + + A A T+++ + PA ++
Sbjct: 58 SCNIKEKGFL-VLMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA A AP P S + + A V G++L+ VQ ++
Sbjct: 117 AAAPPQPPNAPILTPAQA-------APVSTPAQSARAINDENA--FVTGADLQTAVQNMM 167
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 168 EMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 16/131 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G+L+FLRN+ FQ LR +VQ PQ ILQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 254 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDID 313
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 314 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 364
Query: 388 YLLDHMHEFED 398
+L D E ED
Sbjct: 365 FLFDQPDEGED 375
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LDFLRN+ QFQ +R +VQ PQ ILQ+LG NP L ++I ++ FL
Sbjct: 129 GNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL-------- 180
Query: 331 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 181 ----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLF 236
Query: 391 DHMHEFED 398
D E +D
Sbjct: 237 DQGPEEDD 244
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
L + Q Q LR ++Q NPQ I+QEL QNP L +++ ++ +L++ + GEG+
Sbjct: 274 LADHPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGAL-AGEGD 332
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
G + Q V VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 333 EGGDIPPGA-QVVHVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 387
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 170/395 (43%), Gaps = 87/395 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD T
Sbjct: 1 MKIIVKTIQGVLNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + + V+ P N T P +TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPAPKPAPVTQ-PENHP--TEPVPQVTTQPITTNQ----- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P+ PV D++ V E +
Sbjct: 110 ----------------------------PSTQPV----DIFQPQQRQQVNVEPTEENINH 137
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+++MG + R+ I+ALR + NN A ++L SG+ + + AGG P +
Sbjct: 138 LVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV----DLDNIPDQPAGGYEEEDPQE 190
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA--LRTMVQAN 296
P + N+ ++ R Q L+ + N
Sbjct: 191 -----------------------PNSILNLTKEQ---FIELCREQPQIIEPFLQHIESEN 224
Query: 297 PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
PQ+ Q L + NP ++ I + QT+ R+ E + Q + P ++PE+
Sbjct: 225 PQLAQ-LMRNNPGMVYDIIKGQTNNNRV------PSESQPIPQQPNHAPSQPQLSPEDNA 277
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
AI+RL A+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 278 AIDRLCALGFGRSQCLQAYIACDKNEQLAANFLLD 312
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 165/405 (40%), Gaps = 124/405 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L +E+ +V +K+ + + +V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMDESQEVRALKQRLG--KSPEVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S PP + APT
Sbjct: 59 SEYRIAEDKIIVLMGKKRVIES--------------------PP--------EEQVAPT- 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
PP A P AP+ AP +D + V +
Sbjct: 90 -----------PPLAAGPTVLRTEDVAPSLAP----NDQW----------------VNDL 118
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P Q
Sbjct: 119 MSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVPNVQA 168
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q L L +R M+ NP++
Sbjct: 169 SEQ----------------------------------LQHLLADPSITRMREMLNQNPEL 194
Query: 300 LQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVTVTPE 353
+ L + +P + +Q DFL +I+ GG N +G L +T+T E
Sbjct: 195 MHRLMDRLAETDPATFEALGSNQ-DFLNMIS----GGARRTNEVGHLE------ITLTAE 243
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 244 EAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 39/222 (17%)
Query: 191 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT 250
+VI AL NN E AVEYL +A A + Q A+ PAA P
Sbjct: 77 SVIVALEICSNNREAAVEYLMD--------------NAADMAVDLLEQQSAETPAASVPG 122
Query: 251 SGPNANPLDLFPQGL--PNMGSNAGAGT----LDFLRNSQQFQALRTMVQANPQIL---- 300
G + GL P+M AG L FLR + F ++ ++Q +P +L
Sbjct: 123 IGVS---------GLQAPDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPSLLPYLM 173
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVE----GGEGNVLGQLASAMPQAVTVTPEERE 356
Q + NP+LMR+I E+Q +FL +INE E E L +A+AM ++TP + +
Sbjct: 174 QRIQYSNPNLMRIISENQEEFLAMINENSELAPDNREAQELESIAAAMVN--SLTPSDMD 231
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
AI+RL+A+G+ LV++ + AC ++E AA +L+ E ED
Sbjct: 232 AIDRLKALGYPEHLVIQAYIACERDEYKAAEFLVSQNLEDED 273
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ I + G YP +Q LI+ GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 60 EENKVAENSFVV 71
+ + + FV+
Sbjct: 60 SQYNLDDKKFVM 71
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 27/177 (15%)
Query: 158 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
+ +A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 74 LQSRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAE 130
Query: 218 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 277
+ ++ NP + P+ P P S +A + + +
Sbjct: 131 EGT----FYNRLNESTNP-----SLIPSGPQPASATSA-----------ERSTESNSDPF 170
Query: 278 DFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
+FLR+ QF +R+++ NP +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 171 EFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 227
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 295 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 337
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 102/405 (25%), Positives = 164/405 (40%), Gaps = 124/405 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L + +E+ +V +K+ + V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQSSITLEMDESQEVRALKQRLGN--SPKVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S P+ Q V
Sbjct: 59 SEYRIAEDKIIVLMGKKKVIES---------------------PSEEQ-----------V 86
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
AP PP A P AP+ AP +D + V +
Sbjct: 87 APT--------PPLAAGPTVLRTEDVAPSLAP----NDQW----------------VNDL 118
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 239
+ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P Q
Sbjct: 119 MSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVPNVQA 168
Query: 240 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 299
Q L L +R M+ NP++
Sbjct: 169 SEQ----------------------------------LQHLLADPSITRMREMLNQNPEL 194
Query: 300 LQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVTVTPE 353
+ L + +P + +Q DFL +I+ GG N +G L +T+T E
Sbjct: 195 MHRLMDRLAETDPATYEALGRNQ-DFLNMIS----GGARRTNEVGHLE------ITLTAE 243
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
E A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 244 EAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 153/398 (38%), Gaps = 96/398 (24%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ +KTLKG FEI + E +S +K I +G + L+H+GK L D
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+E + EN F+++M+ T Q Q PA
Sbjct: 59 CQELGIKENDFLIMMVF----------------------------TKKQGQIPKQQPAEI 90
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
Q+ PP A P P +S Q+ N S E V+
Sbjct: 91 QNEQQT---QINPPVQSDSAQNHLQKP---PCQISQ-----QQSTEN----SEFEQKVKD 135
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
I MG +++ +I+AL+AA+NN ERA+EYL +G + P
Sbjct: 136 IEAMG---FEKSKIIQALQAAFNNQERAIEYLLNGNIPILQQQQQQPNLQNQEQPLDPVN 192
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 298
+ Q A P QFQ + +++ NPQ
Sbjct: 193 LEELQALAQNP-----------------------------------QFQQIVQVIRQNPQ 217
Query: 299 ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
ILQEL + NP L +L+Q + FL I + + + + A+ + +E
Sbjct: 218 LILPILQELSQTNPQLAQLLQSNPQAFLSYILQQEDQQD-------DNDESNAIQLNNQE 270
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+E + +GFD+ LE + AC+K +ELA NYL D
Sbjct: 271 SNDVEEIIMLGFDKNDALEAYIACDKQKELAINYLFDQ 308
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 164/382 (42%), Gaps = 71/382 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ + VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQP-T 109
E V EN+ ++ K + A ++ P Q +T SS PTS T+P T
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAG 169
+ + + + PQ E PPP+ AP+ A + V N++A
Sbjct: 116 SGAGGASGGITEPQQGAE--PPPSEAAPSQGLA------------LHGVDPTLVDNIIAM 161
Query: 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 229
G DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 162 ---------------GFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 230 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 289
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 290 RTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 345
R++VQANP+ ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 247 RSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVPP 306
Query: 346 QAVTV--TPEEREAIERLEAMG 365
+V++ EER AI+RL +G
Sbjct: 307 DSVSIPLREEERVAIQRLVELG 328
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 157/405 (38%), Gaps = 132/405 (32%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ + V +K+ + ++ + P + Q LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQ-LIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE +V+M G V P P V+
Sbjct: 60 EYRIAEGRIIVLM---------GKKKVDERP-----------------------PVEQVS 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP +P A P DV ASN E V++++
Sbjct: 88 PP------SPLAAGPIAM---------------RTQDVTPSIASN-------EQLVRELM 119
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG G D V ALRA++N+PERA+EYL +GIP
Sbjct: 120 SMGYGEQD---VRSALRASFNHPERAIEYLINGIP------------------------- 151
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q A+P Q L + S L L + +R M++ NP+++
Sbjct: 152 --QEASPQ--------------QELAEIPSGQSTEELQHLMADPRLTRMREMIRENPELM 195
Query: 301 Q----ELGKQNPHLMRLIQEHQTDFLRLI-----------NEPVEGGEGNVLGQLASAMP 345
Q L + +P +Q Q F+ ++ + P EG V
Sbjct: 196 QLIMERLAETDPAAFEAVQHDQEGFMSMLSGAAGSAGGASHNPDEGEHFQV--------- 246
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
++ EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L
Sbjct: 247 ---ALSAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLF 288
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 83/124 (66%), Gaps = 13/124 (10%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LD+LRN+ QFQ LR +VQ PQ ILQ +G NP L +LI +H FL+L+ E E
Sbjct: 273 GNLDWLRNNPQFQQLRQVVQQQPQMLEPILQSVGAGNPQLAQLIGQHPEQFLQLLGE--E 330
Query: 331 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
G EG+ L A P A ++VTPEE EAIERL +GF+R L ++ +FAC+KNEELAAN+
Sbjct: 331 GEEGDAL-----APPGATQISVTPEESEAIERLCGLGFERDLAIQAYFACDKNEELAANF 385
Query: 389 LLDH 392
L +
Sbjct: 386 LFEQ 389
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 59/253 (23%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--- 220
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPDSARQEQA 168
Query: 221 -------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA- 272
P +AGG G A AP+ G P++LF G A
Sbjct: 169 QAAQANAPSSPTPAAGGNTG-----------ATAAPSGGDE--PINLFEAARGGSGGAAR 215
Query: 273 ----------------GAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMR 312
A +L+FLRN+ QFQ LR +VQ PQ ILQ++G NP L +
Sbjct: 216 SGATGAAAGAGGATALNANSLEFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQ 275
Query: 313 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRA 369
+I + FL+L+ E + + +P QA++VT +EREAIERL +GF+R
Sbjct: 276 MIAANPEQFLQLLAEDADDD---------APLPPGTQAISVTEDEREAIERLCRLGFERD 326
Query: 370 LVLEVFFACNKNE 382
+V++ +FAC+KNE
Sbjct: 327 IVIQAYFACDKNE 339
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPAN 93
+ E F+V M++K+ + + + +SA N
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAPLSAVSQN 90
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 79/128 (61%), Gaps = 16/128 (12%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE 327
G G LDFLRN+ QFQ LR +VQ PQ ILQ+LG NP L +LI + FL+L+ E
Sbjct: 264 GGFGNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLQLLGE 323
Query: 328 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384
V+ +P QA+ VT EER+AIERL +GFDR ++ +FAC+KNEEL
Sbjct: 324 EVDDD---------VPLPPGAQAIQVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEEL 374
Query: 385 AANYLLDH 392
AAN+L D
Sbjct: 375 AANFLFDQ 382
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-SSAPPTSTQPTTTSQTPAPTV 119
E K+ E ++ M++K+K S+ S+ P QA T P + +QP +
Sbjct: 58 EYKIKEGVSIIFMISKAK------SSQSSTPQPQAAATPEQKPASESQPKQETSQLGNAA 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A + + A APA S GS EAT+Q I
Sbjct: 112 ATSAAAAAAPASDEAVTEAPA-----------------------STFAVGSEREATIQNI 148
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 149 MEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
>gi|224587227|gb|ACN58624.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 102
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%), Gaps = 10/104 (9%)
Query: 302 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQA-----VTVTPEE 354
+LG++NP L++ I ++Q F++++NEP G G+V +G L +A+ + + VTP+E
Sbjct: 1 QLGRENPQLLQQISQYQELFIQMLNEPA-GEVGDVPEVGDLGAAVEEGAPVNYIQVTPQE 59
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ FED
Sbjct: 60 KEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQG--FED 101
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 22/128 (17%)
Query: 279 FLRNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 334
FL F LR +V NP +LQ L NP L++LI ++Q DF LIN P
Sbjct: 11 FLHIDPAFNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAPS----- 65
Query: 335 NVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+AMPQ + ++PE+ EAIERL A GFDRA + +FAC+K+E AAN
Sbjct: 66 ------VAAMPQGPPPGAQGLQLSPEDAEAIERLVAFGFDRATAAQAYFACDKDENAAAN 119
Query: 388 YLLDHMHE 395
+L +H +E
Sbjct: 120 WLFEHGNE 127
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 16/126 (12%)
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LDFLRN+ QFQ LR +VQ P ILQ++G+ NP L +LI +H FL L++E +
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSEDHDDD 323
Query: 333 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ +P Q V++T EE EAI+RL +GF+R LV++ +FAC+KNEELAAN+L
Sbjct: 324 ---------TPLPPGAQVVSITEEESEAIDRLCRLGFERDLVVQAYFACDKNEELAANFL 374
Query: 390 LDHMHE 395
D E
Sbjct: 375 FDQPEE 380
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 16/131 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LDFLRN+ QFQ LR +VQ PQ ILQ+LG NP L +LI + FL L+ E V+
Sbjct: 268 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVD 327
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 328 DD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 378
Query: 388 YLLDHMHEFED 398
+L D + +D
Sbjct: 379 FLFDQPEDDDD 389
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 15/123 (12%)
Query: 277 LDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
L+FLRNS FQ LR +VQ P +L Q++ + NP L ++I + FL+L+ E EG
Sbjct: 285 LEFLRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAEDQEGD 344
Query: 333 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
G +P A++VTPEER+AIERL +GF R V++ +FAC+KNEELAAN+L
Sbjct: 345 GG--------PLPPGSTAISVTPEERDAIERLCGLGFSRDQVIQAYFACDKNEELAANFL 396
Query: 390 LDH 392
+
Sbjct: 397 FEQ 399
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 28/226 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL+ F ++V+PE V +K+ I G +P + Q LI+ GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
+ E F+V+M++K+K + + +++ +A+ + A + P +T++ A PT
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDATPTT 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
A P PA A A AP S S + GS LE +Q +
Sbjct: 118 T------------TASNPQPASESTTAAAAAPGSDTS---------FLTGSALETAIQGL 156
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 225
+DMG ++R V RA+RA++NNP+RA +YL++GIP P AR
Sbjct: 157 MDMG---FERPQVERAMRASFNNPDRAADYLFNGIPPGLLPTPAAR 199
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 14/121 (11%)
Query: 280 LRNSQQFQALRTMVQANPQILQELGKQ----NPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN QF LR +Q NPQ++ EL +Q NP L+R I E+ +FLRL + + N
Sbjct: 17 LRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQDQQGAPQPN 76
Query: 336 VLGQLASAMPQAVTVTPEEREAIERL-EAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394
+ A+ VTPEER AIERL + G D+ V+E +FAC+KNEEL A+YL +
Sbjct: 77 QV---------AIQVTPEERAAIERLIQLTGMDKHEVIEAYFACDKNEELTASYLFERAD 127
Query: 395 E 395
E
Sbjct: 128 E 128
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 175/400 (43%), Gaps = 98/400 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQTP 115
L + E +V+++ KS V AP Q +T S+ P PT TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPP-----KLAPVTQPETHSTEPIQQPT-TQPITTNQ-- 109
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEAT 175
P+ PV D++ V E
Sbjct: 110 -------------------------------PSTQPV----DIFQSQQRQTVNVEPTEEN 134
Query: 176 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 235
+ +++MG + R+ I+ALR + NN A ++L SG+ + +P +
Sbjct: 135 INHLVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV-DLDNIP------------DQ 178
Query: 236 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ- 294
PA + + P P + N+ + ++ R +Q Q + + +Q
Sbjct: 179 PAGSYEEYPQEPG---------------SILNLTKDQ---FIELCR--EQPQIIESFIQH 218
Query: 295 ---ANPQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 351
NP Q L + NP ++ I + QT+ R+ +EP A + PQ ++
Sbjct: 219 VESENPSAAQ-LIRNNPGMIYDIIKSQTNDNRVPSEP---QHTQPQPNHAPSQPQ---LS 271
Query: 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 272 PEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 311
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++G + A A A ++ A S Q P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVPS---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P PA + A A ++ +D S L GS EA + Q+
Sbjct: 113 ---------------TPTPASSGATTAATGEAAAFND-----PSALAMGSQGEAVISQME 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 153 AMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPE 185
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 16/130 (12%)
Query: 276 TLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331
LDFLRN+ QFQ LR +VQ PQ ILQ+LG NP L +LI + FL L+ E V+
Sbjct: 269 NLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDD 328
Query: 332 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 388
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 329 D---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 379
Query: 389 LLDHMHEFED 398
L D + +D
Sbjct: 380 LFDQPEDDDD 389
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 277 LDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LD LR+ QF LR +VQ NP LQ ++G+Q P L++ I +Q +FL+++NEP+
Sbjct: 216 LDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPMISA 275
Query: 333 --EGNVLGQLASAM-PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
+ V + AM Q + ++ EE A++RL MGFDR+ + + AC+KNE LAAN L
Sbjct: 276 MPQEQVQQYMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 12/103 (11%)
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEER 355
ILQ++ NP L ++I ++ F++L+ E G+ +V A+P Q ++VT EER
Sbjct: 307 ILQQVAAGNPQLAQIITQNPEQFMQLL---AEDGDDDV------ALPPGAQQISVTEEER 357
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
EAIERL +GF+R +V++ +FAC+KNEELAAN+L D E E+
Sbjct: 358 EAIERLCRLGFERDMVIQAYFACDKNEELAANFLFDQPDEPEE 400
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 45/227 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + E F+VVM++K K A+ V +APA
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVESAPA------------------------- 92
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSD---VYGQAASNLVAGSNLEA 174
E A A APA + +P+S ++ G + + + G LE+
Sbjct: 93 --------AEEANKDDATAPAANTTATQSTTTSPISDSTEGQTTTGGDSGSFLTGGPLES 144
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 221
+ +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A P
Sbjct: 145 AMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLANP 188
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+P ++ ++R ++E++ AMG A +E +F C KN E+A Y ++ +FED
Sbjct: 370 LPTLAELSEQDRTSVEQIVAMGIPEAKAIESYFMCGKNVEMAVQYYFENPQDFED 424
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 111/239 (46%), Gaps = 62/239 (25%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-PEQTAV 220
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GI P T+
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 221 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 280
PP AS GQ PPA AQQP G PN
Sbjct: 181 PPAPVASGQGQ---PPA---AQQPV------------------GQPN------------- 203
Query: 281 RNSQQFQALRTMVQANPQILQELGKQ--------NPHLMRLIQEHQTDFLRLINEPVEGG 332
Q Q LR + Q NPQ + +L Q NP L + ++ L+++
Sbjct: 204 ----QIQQLRQLYQQNPQAVLQLLPQLLQQIQQTNPELHAQVSQNPEMLLQMLMGA---- 255
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
GQ P ++ +T +E + IE + +GF + LE + AC+KN E+A NYL +
Sbjct: 256 -----GQQQGPPPGSIQLTQQEFKDIETIMQLGFTKQDSLEGYIACDKNVEMAINYLFE 309
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 280 LRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN Q Q LR +VQ+NP ++Q +L QNP L + ++ ++ E G
Sbjct: 298 LRNHPQIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANILGVDDEEGLAG 357
Query: 336 VLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+ G +P V VTPEER AIERLE +GF R +E +FAC+KNEELAANYL +
Sbjct: 358 MEG--GGDLPPGAHVVQVTPEERAAIERLEGLGFPRQAAIEAYFACDKNEELAANYLFE 414
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E SFVVVM+TK + A P T ++ + VA
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEE----------KKEEAKPQETAAAASASASSAPVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+ ++A A PA S + + A S LV G + V +++
Sbjct: 110 MEEGTTKAAEEKKTEEKAAEPAAETKTQEESSSGLQ-AFHSAESTLVTGEEYQNMVTELM 168
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYL 210
+G + R+ VIRA++A+YNNP RA EYL
Sbjct: 169 SLG---FPRDKVIRAMQASYNNPNRAAEYL 195
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 35/173 (20%)
Query: 159 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 209 FHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPDPP 265
Query: 219 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 278
P G+ P + Q + + G ++P +L+
Sbjct: 266 PETP----------GDQPPSQPSLQSSQSSSQPGGESSP------------------SLE 297
Query: 279 FLRNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINE 327
FL QFQ LR + ++P Q LQ LG+ NP L+++I + Q +F+ LIN+
Sbjct: 298 FLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQ 350
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ + PEER+AIERL+ +GF LV++ +FAC+KNE LAAN+LL
Sbjct: 422 IELMPEERDAIERLKGLGFPEELVIQAYFACDKNENLAANFLL 464
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD---PKLQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + + ++ SA PA A SS P P TS T A
Sbjct: 58 TYKIEEKGFVVCVVNKPKPAPAPEASSSAVPATPAPAQSSTPAPPAAPAQTSGTAAAV-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PA P P AP AP A + + +A +N+ A
Sbjct: 116 -----------PATPTPNRTAAPEAAPNDANALATGEQRAEAIANMEA------------ 152
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG ++R + A+RAA+ NP+RA+ ++ GIPE
Sbjct: 153 -MG---FERAQIDAAMRAAFYNPDRAL-TIHKGIPEH 184
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 95/217 (43%), Gaps = 49/217 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 61 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 82
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +S P+ P PA A A AP V+ Q L S E T Q I+
Sbjct: 83 PVESTPQ---PSNLQIPAGAQA---TTAPVSVADSGPSTPQNPDGLT--SEQEETAQAIV 134
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217
MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 135 AMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 16/125 (12%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LDFLR++ QFQ LR +VQ PQ ILQ+LG NP L LI + FL+L+ E +
Sbjct: 263 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIATNPDQFLQLLGEYAD 322
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 323 DD---------TPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 373
Query: 388 YLLDH 392
+L D
Sbjct: 374 FLFDQ 378
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 20/127 (15%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LDFLRN+ QFQ LR +VQ PQ ILQ+LG NP L +LI + FL L+ E +
Sbjct: 253 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDAD 312
Query: 331 GGEGNVLGQLASAMP-----QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 313 -----------DDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELA 361
Query: 386 ANYLLDH 392
AN+L D
Sbjct: 362 ANFLFDQ 368
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 23/214 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E E F VVM+ K K + + A+ SAAP+ A + + + + P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S +A PAPA A PA A++ ++GS LE ++ +++
Sbjct: 119 AAPSSAPAATEAETPAPA-------ANQPA----------DEATSFISGSALETSISEMV 161
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + RE V RA+RA++NNP RAVEYL +GI
Sbjct: 162 AMG---FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 182/453 (40%), Gaps = 108/453 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N F+V+ K K+ ++ P+ + Q T +AP S AP A
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKP-----ASMPSAEPQKTEAAPEFS----------APLSA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP--------------------------------- 147
+APPPA P A
Sbjct: 101 -------TAPPPAMPTSASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTP 153
Query: 148 ---APAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE 204
+ PV+S + +YG A NL + ++ M G DR + ALRAA+ N +
Sbjct: 154 PAGSAIPVASAASIYG-VAPNL---------IDEVAAM--GFEDRNQIALALRAAFMNVD 201
Query: 205 RAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG 264
RAVEYL+ GIP V ++ G P +A P+A + T+ A P+
Sbjct: 202 RAVEYLFDGIPPHL----VEELTSHGLPAAPAEAPRASNPSASSATA---AVPVST-SLA 253
Query: 265 LPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN----PQILQELGKQNPHLMRLIQEHQTD 320
S A + D L QF +RT+ N P ++Q++ ++P + I+ +
Sbjct: 254 SAATLSTAASEMRDALSRIPQFDEIRTLYNQNTDTLPVVMQQIALRHPAVYEQIERNPEV 313
Query: 321 FLRLINEPVEGGEGNV------------------LGQLASAMPQAVTVTPEEREAIERLE 362
FL ++ E + G N G + + V +T E+R A+++L
Sbjct: 314 FLSIMGEAGQPGTSNAPPGSVASPTAEAVVGDTEEGSFMNELQAGVELTAEDRMAVQQLV 373
Query: 363 AMG---FDRALVLEVFFACNKNEELAANYLLDH 392
+G +D + V+ A +N+E+AA+ L +H
Sbjct: 374 ELGGGMWDEQSAVLVYLATQRNQEVAASVLFEH 406
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 58/218 (26%)
Query: 177 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 236
Q++ D+ ++ + V ALRA++N+PERA+EYL +GIP Q + +AG G
Sbjct: 111 QRVRDLILMGYEEQDVRAALRASFNHPERAIEYLITGIPNQA---DQQQTTAGSHDGAEV 167
Query: 237 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 296
++ A L++L +F +R +V+ N
Sbjct: 168 SE----------------------------------AAERLNYLATDPRFAHVRDLVRQN 193
Query: 297 PQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 352
P++L+ L + +P I+ +Q +F+ ++N+P A ++
Sbjct: 194 PELLELVLSHLRETDPAAFATIRNNQEEFVNMLNQPT-----------------AADLSS 236
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
++ A+ERL A+GF+R +V+ V+ AC+KNEEL A+ L
Sbjct: 237 DDEAAVERLMALGFERDVVVPVYLACDKNEELTADLLF 274
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 14/117 (11%)
Query: 282 NSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
N Q Q LR ++ NP ++QE+ QNP L +L ++ +++ G++
Sbjct: 273 NHPQIQHLREIMAQNPALIQPVIQEIAAQNPQLAQLFAQNPEALAQILG-------GDLG 325
Query: 338 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
+ +P Q + VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 326 DEEEGGIPPGAQVIQVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 382
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 182/427 (42%), Gaps = 64/427 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST------QPTTTSQT 114
+ V +N +V+ K K+ A + P +A SSAP +ST P T+ +
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMSAPALTTTS 115
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEA 174
PA + AP + P AA PA AP +S ++ YG A NL
Sbjct: 116 PATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNL-------- 166
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 234
+ ++ MG DR + ALRAA+ N ERAVEYL+ GIP V +
Sbjct: 167 -IDEVASMGFE--DRSQIALALRAAFMNVERAVEYLFEGIPSHL----VEELAPFSAPAA 219
Query: 235 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 294
P A A P+A + T+ A+ + S A L QF +R +
Sbjct: 220 PAAAPGASNPSASSATAVAPASASPAPAATPSSAESEMRAA----LSRIPQFDEIRILYN 275
Query: 295 AN----PQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------ 332
N P ++Q++ ++P + I+ FL +++E + G
Sbjct: 276 QNTDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMSESGQPGTASAPAGSAAPSTAQAVA 335
Query: 333 ----EGNVLGQLASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELA 385
E + + QL S + +T E+R A+++L +G +D V+ A +N+E+A
Sbjct: 336 GDAEESSFMNQLQSGLE----LTAEDRTAVQQLVELGGGMWDEQSAALVYLATQRNQEVA 391
Query: 386 ANYLLDH 392
A+ L +H
Sbjct: 392 ASVLFEH 398
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 70/251 (27%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 228
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 229 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 287
GG+A A+ +AQ+ LD L N Q +
Sbjct: 164 QGGEAPAVDAEAEAQEHE------------------------------DLDILANLPQLE 193
Query: 288 ALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 343
+R +VQ NP+ ILQ++ NP L+R IQ +Q +F+ ++N G GQ
Sbjct: 194 EIRQLVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN----GA-----GQYDQN 244
Query: 344 MP------------------QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEEL 384
+P + V + E+ +AI R++A+ A V+E +FAC+++EE
Sbjct: 245 LPGAGAGAAGAAAGGQGGRRRVVHLNQEQLDAINRIKAIVNASEATVVEAYFACDQDEEA 304
Query: 385 AANYLLDHMHE 395
A N++ + M E
Sbjct: 305 AINFIFNTMDE 315
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 118/232 (50%), Gaps = 35/232 (15%)
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 233
A + I +M ++R + A+RAA+NNPERAVEYL +GIP P + A Q
Sbjct: 147 ARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIP------PHLQQEA--QPS 198
Query: 234 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------GTLDFLRN 282
PA A AAPA N N DL Q GS + G L++LR+
Sbjct: 199 RSPAGASAAPSAAPAAPEDDNVNLFDLAAQQGRGSGSRGASGAGAAAQQQGLGNLEWLRH 258
Query: 283 SQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 338
+ QFQ LR +VQ PQ ILQ L NP L +I + FL L++E G
Sbjct: 259 NSQFQQLRQVVQQQPQMLEPILQTLSASNPQLAHVIATNPDQFLELLSET---------G 309
Query: 339 QLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN
Sbjct: 310 DDDAPLPPGAHQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAAN 361
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
K+ E F+V M +K K APP+ P T +++ A T
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APPSKPADPATPAKSVASTP 95
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
APP + + A A+ APA + A V++ +D S L G A + +
Sbjct: 96 APPAAPAQFATSAASQAPATPSPAPASTASGDVATFND-----PSALAMGEQRAAAIANM 150
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 151 EAMG---FPRDQIDAAMRAAFFNPDRAVEYLLNGIPE 184
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 155/396 (39%), Gaps = 116/396 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ + +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K A Q P +
Sbjct: 58 DLGIQEKDFLVVMVNVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIE------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P P P + + + S+ Y QA NL+
Sbjct: 105 -------------------VPKPLNNPTTSNMVTGSE-YDQAIQNLIQ------------ 132
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG + E A++AA+NN RA+EYL +G+P PP
Sbjct: 133 -MGFAKSECEA---AMKAAFNNQNRAIEYLLNGLPVIDQPPP------------------ 170
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI- 299
QPA NAN +D Q + Q LR NPQ
Sbjct: 171 --QPAL-------NANQVD---QNI--------------------LQLLREQFMQNPQAV 198
Query: 300 ---LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEERE 356
+Q+L + NP L + IQ++ ++L+ + GEG+ +T EE +
Sbjct: 199 LQSIQQLQQTNPQLYQQIQQNPETLIQLLMGAGQ-GEGD---------EIETEITQEEEQ 248
Query: 357 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ +L MGF + LE F AC+KN E AA+YL +
Sbjct: 249 QLNQLMMMGFSKEDALEGFLACDKNVETAASYLFEK 284
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 92/290 (31%)
Query: 162 AASNLVAGSNLEATVQQILD------MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
A+SN V ++ T++ LD + + + +V+ AL+ AYNNP+ A++YL SG+
Sbjct: 260 ASSNTVTANDRHETMELQLDDNLVNELCMMGFRKSSVVVALKMAYNNPDVAIDYLTSGVD 319
Query: 216 ----EQTAVPPVARASAGGQ-AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 270
++ +A++ GQ GN P Q
Sbjct: 320 LIRLKERIDNEIAQSRTVGQDGGNEPEYDGIAQ--------------------------- 352
Query: 271 NAGAGTLDFLRNSQQFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLIN 326
LR++ + LR +VQ +P +L E+ + NP++ RLIQE+Q F++L+N
Sbjct: 353 ---------LRHNPAIKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQLLN 403
Query: 327 ------EPVEGGEGNVLGQLASAMPQA--------------------------------V 348
EP++ Q Q +
Sbjct: 404 ERVDQNEPMKQEVQKQQQQPQQQQQQQQQQPQQQRRRQQQQQQHQQQEQSTSSGTRIFRI 463
Query: 349 TVTPEEREAIER---LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+T EER+A++R L AMGF + V+E +FAC+KNE LAAN+LL + E
Sbjct: 464 HLTAEERDAVDRCQALVAMGFSESQVIEAYFACDKNEALAANFLLQSLEE 513
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 153/395 (38%), Gaps = 115/395 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L F +E+ V +KK++ + + A Q LI+ G++++D L
Sbjct: 1 MKLLIRSLDQKSFNVEMNVSQSVLALKKHLAGIPEISL-SAEQLQLIYAGRIMEDTQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + ++VM+ K+K P + + PT
Sbjct: 60 EYNIQDGK-IIVMMGKNK------------------------PVQVETPVKEELVPPT-- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PP + S P P+ AP E V++++
Sbjct: 93 PPLTAQSSQQEPRRPSQAPN--------------------------------EDRVRELV 120
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG ++ E V ALRA++N+PERA+EYL +G+ PP+Q
Sbjct: 121 SMG---YEEEEVRAALRASFNHPERAIEYLINGL--------------------PPSQPL 157
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+ + S A L R Q A+R +A +L
Sbjct: 158 PTPSTTSSSSLS-----------------SPDWAELLSDPRFIQFRDAIRDHPEALEGLL 200
Query: 301 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 360
+ +G+ +P + E + G N + V++TPEE A+ER
Sbjct: 201 RRIGESDPETL---------------EAIRNGIQNGFEDDGGSESIQVSLTPEELAAVER 245
Query: 361 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
L ++GF R +VL+V+ AC+KNEELAA+ L E
Sbjct: 246 LISLGFQREMVLQVYLACDKNEELAADILFRESEE 280
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 19/124 (15%)
Query: 280 LRNSQQFQALRTMVQANPQILQELGKQ----NPHLMRLIQEHQTDFLRLIN-----EPVE 330
LR++ Q LR +V NP ++Q L +Q NP L +LI ++ +L+ + +
Sbjct: 273 LRDNPQIAQLRELVAQNPALIQPLIQQLAGSNPQLAQLIAQNPEALFQLLGGENGLDFED 332
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
GEG +P Q + +T EER+AIERLEA+GF R V+E +FAC+KNEELAAN
Sbjct: 333 DGEG-------GGLPPGAQVINITEEERQAIERLEALGFPRQAVIEAYFACDKNEELAAN 385
Query: 388 YLLD 391
YL +
Sbjct: 386 YLFE 389
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 280 LRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 332
L NS Q Q +R VQ NP + LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 286
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
E A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 287 E-----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEI 341
Query: 393 MHEFE 397
E E
Sbjct: 342 AEEDE 346
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKSK 78
K+LKD T+ + K+ E F+VVM++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 280 LRNSQQFQALRTMVQANPQI----LQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 332
L NS Q Q +R VQ NP + LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 277
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
E A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 278 E-----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEI 332
Query: 393 MHEFE 397
E E
Sbjct: 333 AEEDE 337
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 50 -GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 79/123 (64%), Gaps = 11/123 (8%)
Query: 277 LDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 332
LDFLRN+ QFQ LR +VQ P ILQ++ +P L ++I ++ F++L+ E G
Sbjct: 272 LDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLL---AEDG 328
Query: 333 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+ + LA+ ++ VT EER+AIERL +GF+R V++ +FAC+KNEELAAN+L D
Sbjct: 329 DDD----LAAPPGGSIAVTEEERDAIERLCRLGFERQDVIQAYFACDKNEELAANFLFDQ 384
Query: 393 MHE 395
E
Sbjct: 385 PDE 387
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 59/227 (25%)
Query: 184 GGSWDRETVIRALRAAYNNPERAVEYLYSGI----PEQTAVPPVARA--SAGGQAGNPPA 237
G +++E ++RALR A N+ + A + L SG P+Q A ++ G Q +P A
Sbjct: 119 GMGFEQEQIVRALRLARNDLQNACDLLLSGAQRTDPQQEASNLMSDLIQRMGQQNSDPQA 178
Query: 238 QTQ--AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 295
Q + QQP QFQ +R+++Q
Sbjct: 179 QFEWVVQQP----------------------------------------QFQRIRSLLQT 198
Query: 296 NPQI----LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------VLGQLASAMP 345
P + L +LG NP L LI ++Q +FL +N+ EGG+G+ V
Sbjct: 199 RPDLFAALLTQLGGSNPQLHELISQNQAEFLEWLNDE-EGGDGDGSDIAVVQTGGGGGGG 257
Query: 346 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
A ++ + +I RL +GF R +V + + AC KNEE+AANYL ++
Sbjct: 258 AAAQLSQRDESSITRLMELGFGRDVVRQAYLACGKNEEMAANYLFEN 304
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 12/97 (12%)
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEER 355
ILQ+LG NP L LI + FL+L+ E + +P QA++VT EER
Sbjct: 18 ILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD---------VPLPPGAQAISVTEEER 68
Query: 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 69 DAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 105
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 195 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
ALRAA+N+ RA YL GIP+ V S G A A A A +
Sbjct: 98 ALRAAFNDVSRAASYLMEGIPDN-----VGAGSGGSDARGGGDAALAAAMMAGAEDEDGD 152
Query: 255 ANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQANP----QILQELGKQNPH 309
MG AG G L+F+R QF LR +V+ NP Q+LQ L Q+P
Sbjct: 153 EGGGGAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQGLATQSPE 212
Query: 310 LMRLIQEHQTDFLRLINEP--VEG---GEGNVLGQLASAMPQA----------------- 347
L+ I +H DFLRL+NEP EG E V G L +
Sbjct: 213 LIERINQHPDDFLRLMNEPPDAEGQAIMEMGVEGLLEGMDQEDDEEEEGGDAEAVAAGGG 272
Query: 348 --------------------VTVTPEEREAIERLEAM--GFDRALVLEVFFACNKNEELA 385
V +T EE ++ L AM G R V+E F AC+KN E+A
Sbjct: 273 GGSPGVGVAGGDGGQGQIVTVELTEEEDAVVQNLMAMVPGAGRDQVIEAFIACDKNAEMA 332
Query: 386 ANYLLDH 392
AN L ++
Sbjct: 333 ANLLFEN 339
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTLKG F I+V E +SDVK I V+G D P + Q+LI GK LKD +L V
Sbjct: 7 VKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD--PGT-QVLICGGKTLKDGDSL-AGSV 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS 100
A F+V+M+ + + ++A + Q T++
Sbjct: 63 AAGGFLVLMVKALAIDPANVEMLTAMGFPEDQATAA 98
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 12/123 (9%)
Query: 280 LRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 335
LRN+ Q Q LR + +P+ ++Q+L Q P L++ ++ F+RL++ +
Sbjct: 35 LRNNPQIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLDLDPQS---- 90
Query: 336 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+A ++VT EER AIERLEA GF R VLE + AC+K+E +AANYL +H +E
Sbjct: 91 ----MAPQGSHVISVTEEERAAIERLEAFGFPRHKVLEAYLACDKDETMAANYLFEHGYE 146
Query: 396 FED 398
+D
Sbjct: 147 DDD 149
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 285 QFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
Q Q LR +V+ NP ++Q +L QNP + + + + L+L+ EG G+
Sbjct: 295 QIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGPEGE- 353
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
Q ++VT EEREAI RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 354 VPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 409
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 56/300 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +SF+VV+ +G++ +AAP+N + S+ T T T T AP
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQQ 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + PAPA PA + S ++ + E ++++
Sbjct: 121 PTR---------------PAPASGTTPAASQDS------------FLSAESREKALRELT 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
DMG +DR ALRA++ + ERA EYL +G +P ++ S A NP +
Sbjct: 154 DMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNISEPS----AANPEGGS- 200
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
Q P+ ++G G G L L S QFQALR ++Q NP L
Sbjct: 201 GQTPSGSESSTG----------------GRRGGEDDLVELSQSPQFQALRQLIQQNPDQL 244
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 23/133 (17%)
Query: 268 MGSNAGAG---TLDFLRNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTD 320
M G G + LRN+ F LR +Q NP ++LQ+ + NP L+R I E+ +
Sbjct: 1 MAEAEGTGEPNIFEALRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQE 60
Query: 321 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACN 379
FLRL EP + A+ V+ EEREAIERL + G ++A V+E +FAC+
Sbjct: 61 FLRLFQEPQQV---------------AIQVSQEEREAIERLILLTGLEKAEVVEAYFACD 105
Query: 380 KNEELAANYLLDH 392
K+E+L A+YL +
Sbjct: 106 KDEQLTASYLFER 118
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 189 RETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA 248
R+ I ALRAA+NNP+RA EYL SG+ Q G G+ + +
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGVNLQALASQPGGQEGAGAGGDDMGDDYGDEEGSSD 206
Query: 249 PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQELGKQ-- 306
P G NP Q PN F +R + +PQ Q+ Q
Sbjct: 207 PFGGA-GNPFAALAQN-PN------------------FALIRQRILQDPQFYQQFMSQLQ 246
Query: 307 --NPHLMRLIQEHQTDFLRLI------------NEPVEGGEGNVLGQLASAMPQAVTVTP 352
P L LIQ++ F+ LI G G + P ++ VT
Sbjct: 247 QTQPQLFALIQQNPAAFMNLILAGDPNAGLAGMAGAGAGAGHAHGGAGGANPPGSIRVTQ 306
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+E EAI RL ++GF + E +FAC+KNEELAANYL + E E+
Sbjct: 307 DEMEAINRLTSLGFPKHKAAEAYFACDKNEELAANYLFETGFEDEE 352
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 52/214 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+ K Q P Q
Sbjct: 58 ELGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
A P APAP N+V GS +A +Q ++
Sbjct: 105 ---------------------AFKPVVAPAP------------QNMVTGSEYDAAIQNLI 131
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214
MG + E A++AAYNNP+RA+EYL +GI
Sbjct: 132 QMGFAKSECEA---AMKAAYNNPDRAIEYLLNGI 162
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 150/401 (37%), Gaps = 124/401 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ V +K+ + + + PA LI+ G++++D L
Sbjct: 1 MKLSIRMLDQHTITLEMNESQDVKTLKQILGNLPEVSL-PAENVQLIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +AE +V+M K + S P PT
Sbjct: 60 EYNIAEGRIIVLMGKK-------------------KADVSLPEEQVSPT----------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
+P +A P P+ AP E V ++
Sbjct: 90 ----IPLAAEPMRTQDVTPSMAPN----------------------------EQWVCDLM 117
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG G + V ALRA++N+PERA+EYL +GIP++ + P
Sbjct: 118 SMGYGE---QEVRSALRASFNHPERAIEYLINGIPQEAS----------------PEHEL 158
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
A+ P S L L + +R M++ NP+
Sbjct: 159 AEIP-------------------------SGQSTEQLQHLMGDPRLTQVREMIRENPELM 193
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-------LGQLASAMPQAVT 349
IL+ L +P + Q + ++ V G G+ G+L V
Sbjct: 194 QLILERLADTDPAAFEDVHRDQEGLMTMLA-GVAGSVGDANHNHNPDEGELLQ-----VA 247
Query: 350 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+T EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L+
Sbjct: 248 LTAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLI 288
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F ++ + D VS VK+ I+ +Q +P SQQ LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIKELQK---FPVSQQKLIHAGKVLKDDSTLA 57
Query: 61 ENKVAENSFVVVMLTK 76
E V EN F+VVM+TK
Sbjct: 58 EYNVKENDFLVVMVTK 73
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 16/120 (13%)
Query: 275 GTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
G LDFLRN+ QFQ LR +VQ PQ ILQ+LG NP L +LI ++ FL L+ E +
Sbjct: 278 GNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGEDAD 337
Query: 331 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
+ +P QA+ VT EER+AIERL +GF R ++ +FAC+KNEELAAN
Sbjct: 338 ED---------APLPPGAQAIAVTEEERDAIERLCRLGFGREQAIQAYFACDKNEELAAN 388
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 17/97 (17%)
Query: 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVTVTPE 353
ILQ LG NP L +LI + FL+L+ E V+ +P QA+ VT E
Sbjct: 259 ILQ-LGAGNPQLAQLIANNPDQFLQLLGEEVD-----------DDVPLPPGAQAIAVTEE 306
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
ER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 307 ERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLF 343
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M+ K K + S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P S A + P+ A G ++A N+EA
Sbjct: 118 XXXXAPRSTGGGDAASNDPSMA----------------MGAQRQEVIA--NMEA------ 153
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 154 -MG---FERSQIDAAMRAAFYNPDRAVEYLLNGIPE 185
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+K S
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135
Query: 82 SGA 84
G
Sbjct: 136 MGG 138
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 57/267 (21%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTA 219
+S L G+ A + ++ MG ++R + A+RAA+ N ERA+EYL +GIPE Q
Sbjct: 69 SSGLAMGAERAAQIAEMESMG---FERSQIDLAMRAAFFNSERAIEYLLTGIPENLQQEQ 125
Query: 220 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG--------------L 265
P A ++ + PPA Q AA P DLF +
Sbjct: 126 RAPPAADASADTSDAPPAAE--DQAAAGVPD--------DLFERARLGAAAGGGGGGSPF 175
Query: 266 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQELGKQNPHLMR------------- 312
+MG+ AG LR Q Q L+++ +QNP ++
Sbjct: 176 GSMGAGGAAGAGAAPGGLGNLDFLRNNAQF--QQLRQVVQQNPQMLEPILQQVGAGNPQL 233
Query: 313 --LIQEHQTDFLRLINEPVEGGEGNVLGQL-ASAMPQAVTVTPEEREAIERLEA----MG 365
LI +H FL+L++E +G+ L A ++VT ER AIER+ + G
Sbjct: 234 AALIGQHPEQFLQLLSE-----DGDNDAPLPPGAQATQISVTEPERAAIERVSSPDITFG 288
Query: 366 FDRALVLEVFFACNKNEELAANYLLDH 392
F R ++ +FAC+KNEELAAN+L D
Sbjct: 289 FPRDQAIQAYFACDKNEELAANFLFDQ 315
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 139/340 (40%), Gaps = 62/340 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +K + G E EV E V D+KK +E D Y + + +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + +V + K + + +T A ++ SA S Q S +
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVESVPQSTATE 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
PQSV + PP+A + P ++ G + A + ++
Sbjct: 116 VPQSVAHN--PPSASSTETNP------------------------MLRGVD-PALIDTVV 148
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240
MG DR V ALRAAY N +RAVE+L SGIP + P
Sbjct: 149 SMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDLGPVFHDD 195
Query: 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 300
+Q P P+S A P + +G+ L +F+ +R +V+ANPQ +
Sbjct: 196 SQHGMFPIPSSMAPAAPTE-----------GSGSALEQALMAVPRFEEIREIVRANPQAI 244
Query: 301 ----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 336
Q+L P + RL+Q++ +F ++ G G+V
Sbjct: 245 ASAVQQLQLHYPDIARLVQQNPQEFATIMLR--HGAAGHV 282
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 56/252 (22%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
+ TVQQ L+MG +DR + ++A++ + A E+L SGIPE +
Sbjct: 153 DETVQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPENV------KQMMQENG 203
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
GN P P G A+ L G+ G D S Q LR
Sbjct: 204 GNLPT----------PPQGGSLASAL---------AGNQQGFSLRDLFTLSPQLNNLRNA 244
Query: 293 VQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEPVEGGE--------------- 333
++ NP +L+E + +P L ++IQ + +FL +INE
Sbjct: 245 IRQNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINETGPVTGTTGTQPQTTPTTTTG 304
Query: 334 ------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 387
G L Q A P + ++ ++ I L +GF + ++ + AC+KN+E+AAN
Sbjct: 305 GEHPPSGEELQQ--QAPPGTIFISQDDERKINELVGLGFTKNEAIQAYLACDKNQEMAAN 362
Query: 388 YLLDHMHE-FED 398
L ++ FED
Sbjct: 363 LLFENRDRGFED 374
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 49/229 (21%)
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 232
E VQ+++ MG ++ V AL A++N+PE A+EYL + IP + +A G A
Sbjct: 127 EEMVQRLMGMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSE---------AASGTA 174
Query: 233 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 292
P + +P+ A ++L P L + +F +R M
Sbjct: 175 S----------PVSVSPSVAEMA--VNLAP-----------------LMSDPRFAQVREM 205
Query: 293 VQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINE--PVEGGEGNVLGQLASAMPQ 346
+ NP IL ++ NP + ++ H +F+ L+N V + Q SA Q
Sbjct: 206 ILQNPDQLEAILGQMSGSNPEVFEALRNHHGEFVDLLNYDLSVLSDDDEFPQQADSA--Q 263
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
+T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 264 QTPLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 312
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDGLPLS 59
Query: 61 ENKVAENSFVVVMLTKSKV 79
E K+AE+ F +VM+ K KV
Sbjct: 60 EYKIAEDKF-LVMMGKQKV 77
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVST 82
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F ++ + D VS VK+ IE +Q +P +QQ LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIEGLQN---FPVAQQKLIHAGKVLKDDSTLA 57
Query: 61 ENKVAENSFVVVMLT 75
E V EN F+VVM+T
Sbjct: 58 EYNVKENDFLVVMVT 72
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ +T EE A++RL MGF+R V++ + AC+KNE LAAN+L+
Sbjct: 387 IMLTEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLM 429
>gi|380476277|emb|CCF44800.1| hypothetical protein CH063_14080, partial [Colletotrichum
higginsianum]
Length = 94
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 302 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAI 358
+LG NP L +LI + FL+L+ E V+ +P QA+ VT EER+AI
Sbjct: 1 QLGAGNPQLAQLIANNPDQFLQLLGEEVDDD---------VPLPPGAQAIQVTEEERDAI 51
Query: 359 ERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
ERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 52 ERLCRLGFDRDAAIQAYFACDKNEELAANFLF 83
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 73.6 bits (179), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 32/251 (12%)
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-ATVQQILD 181
Q+V E AP + + APA A AP P P + + + S++ A ++ A + I
Sbjct: 18 QNVKE-APHVSEGSEAPATASAPTPGEQPSAETAAAAPRTGSSVAATQGVDPALIDSIAA 76
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MG DR+ + ALRAAY NP+RAVE+L++GIP V R A Q P T
Sbjct: 77 MG--FEDRDQIALALRAAYMNPDRAVEFLFTGIPSH-----VQRELAESQLRAVPGNTSV 129
Query: 242 QQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ-- 298
A P SG + LF NA L Q + +R++V++NPQ
Sbjct: 130 SGGVDATHPQSGRGGDTESLF---------NA-------LMAVPQMEEIRSIVRSNPQAL 173
Query: 299 --ILQELGKQNPHLMRLIQEHQTDFLR-LINEPVEGGEGNVLGQLASAMPQAV-TVTPEE 354
++Q+L ++ P + +L+Q+ +F+R ++ + V V A+ +A+ + EE
Sbjct: 174 GTVIQQLQERFPQIAQLVQQDPEEFMRFMVGDAVTADTEAVSDGGAALASEAIPPLREEE 233
Query: 355 REAIERLEAMG 365
R A+ RL +G
Sbjct: 234 RAAVNRLVVLG 244
>gi|349604998|gb|AEQ00385.1| UV excision repair protein RAD23-like protein B-like protein,
partial [Equus caballus]
Length = 94
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 314 IQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIERLEAM 364
I +HQ F++++NEPV+ G + + S + VTP+E+EAIERL+A+
Sbjct: 2 ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKAL 61
Query: 365 GFDRALVLEVFFACNKNEELAANYLL 390
GF LV++ +FAC KNE LAAN+LL
Sbjct: 62 GFPEGLVIQAYFACEKNENLAANFLL 87
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
Q A+R MVQ NP +LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 339
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 340 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 392
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 37/217 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K PT +++ A A
Sbjct: 58 SYNIEEKGFVVCMVNKPK-----------------------------PTKPAESSAAPPA 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSVSDVYGQAASNLVAGSNLEATVQQI 179
P + P P A A A PA P P S +D + S L GS + +
Sbjct: 89 TPAAPPTRTPAAPAAPAQSASQQAAVPATPTPQRS-ADAGSEEPSGLAMGSQRTEAIANM 147
Query: 180 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 148 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 181
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 285 QFQALRTMVQANPQ----ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
Q A+R MVQ NP +LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 276 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 335
Query: 341 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 336 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 388
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPP 103
++ E +FVVVM+TK+K S + A+P ++++S PP
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPP 122
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPVPAAVQA 54
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 182 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 241
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPIPAAVQA 54
>gi|158430391|pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
gi|158430393|pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
gi|158430397|pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 16/124 (12%)
Query: 279 FLRN-SQQFQALRTMVQANPQILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 337
L N S ++ LR + ANP++ + L+ + ++ D + ++ VEG + V
Sbjct: 52 LLENISARYPQLREHIMANPEVFVSM------LLEAVGDNMQDVMEGADDMVEGEDIEVT 105
Query: 338 GQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+KNEE AAN L
Sbjct: 106 GEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANIL 165
Query: 390 L-DH 392
DH
Sbjct: 166 FSDH 169
>gi|407042326|gb|EKE41271.1| RAD23 protein, putative [Entamoeba nuttalli P19]
Length = 317
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 174/399 (43%), Gaps = 93/399 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K+ I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKEMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + V+ + + T+TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPPKPAPVAQPETHSTEPIQQPTTTTTQPITTNQ----- 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQ 178
P+ PV D++ V E +
Sbjct: 113 ----------------------------PSIQPV----DIFQSQQRQTVNVEPTEENINH 140
Query: 179 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 238
+++MG + R+ I+ALR + NN A ++L SG+ + + AGG P
Sbjct: 141 LVEMG---FLRDNAIKALRKSQNNTAIAADFLISGVD----LDNIPDQPAGGYEEYP--- 190
Query: 239 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ---- 294
Q+P + + D F ++ R +Q Q + + +Q
Sbjct: 191 ---QEPGSILNLTK------DQF---------------IELCR--EQPQIIESFIQHVES 224
Query: 295 ANPQILQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAVTVTP 352
NP Q L + NP ++ I + QT+ R+ + +P + + A A PQ ++P
Sbjct: 225 ENPSAAQ-LIRNNPGMIYDIIKSQTNDNRVPSGPQPTQPQPNH-----APAQPQ---LSP 275
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 391
E+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 276 EDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 314
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 133 AAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETV 192
+AP+ A P A + YG+A SNL+AGS LE T+QQI D+G R+ V
Sbjct: 36 SAPSKKAIRPKARHPQGAASRMLLGTYGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIV 93
Query: 193 IRALRAAYNNPERAVEYLY 211
IRAL AAYNNPER VEYLY
Sbjct: 94 IRALSAAYNNPERTVEYLY 112
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 285 QFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 340
Q R V NP +LQ ++ + NP+L + ++++ L+L+ G
Sbjct: 287 QLGQFRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQLLGAIGGEGGLEEGEGG 346
Query: 341 ASAMPQAVTV---TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397
+P TV TPEER AIERLEA+GF R V+E +FAC+KNEE+AANYL + + FE
Sbjct: 347 EGGIPPGATVLQVTPEERAAIERLEALGFPRQQVVEAYFACDKNEEMAANYLFE--NGFE 404
Query: 398 D 398
D
Sbjct: 405 D 405
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 37/196 (18%)
Query: 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
++ +P D V +K IE G +P + Q +I+ GK+L D T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA 134
+K K P A T+S+ P + + + T +
Sbjct: 58 SKPK------------PTPAATTSSTPAPATPVAAPPTSESSSTTTTAPPPAAAPVSSTE 105
Query: 135 PAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIR 194
PA A +G +S ++GS L+ T+ +++MG + ++ V+R
Sbjct: 106 PAQQRA------------------FGDTSS-FLSGSALQDTINNMVEMG---FPKDQVLR 143
Query: 195 ALRAAYNNPERAVEYL 210
ALRA++NNP+RAVEYL
Sbjct: 144 ALRASFNNPDRAVEYL 159
>gi|123504409|ref|XP_001328742.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121911689|gb|EAY16519.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 310
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 152/395 (38%), Gaps = 96/395 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + G E+EV + ++DVKK I V+ + + + L+ + K LK +TL+
Sbjct: 1 MKIICQIFSGDKLELEVTEDQDINDVKKQISEVKNAKI---EEIKLLFKSKFLKSPSTLK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + ENS ++VM+ K + T PA + + AP QP T + P +A
Sbjct: 58 ECGITENSKLIVMVPNKKPAPPINKTTETKPAEE----NKAP---NQPEETKKIIQPEIA 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P +V + + P + E ++Q+
Sbjct: 111 PLPTVDKKSKIELPP-----------------------------------DFEDKIKQLQ 135
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQT 239
+G ++ RALR A N E A L SG IP++
Sbjct: 136 QLG---YEYSECSRALRVAGFNTEIAANILLSGSIPDEIDY------------------- 173
Query: 240 QAQQPAAPAPTSGPNAN--PLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+ A PT G + N D P + + + + ++ Q L M+ +
Sbjct: 174 ---ELAGDLPTDGDDENGEEEDASLHITPEIKKH-------YEEHPEKIQELIDMLLLSD 223
Query: 298 QILQELGKQNPHLMRL---IQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 354
L K NP L+ + DF +L G ++ +L + T EE
Sbjct: 224 PAYYFLAKNNPMLLLTQLGFDVSKFDFSKL-------GPKSMYQELLDKL------TDEE 270
Query: 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389
++ ++RLE G+D VL+ F ACNK+E+L L
Sbjct: 271 KQVVKRLEEKGYDSMEVLQTFEACNKDEKLTEECL 305
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQ 94
+ K+ E +FVVVM++K+K S++ AST S+ NQ
Sbjct: 61 DYKIDEKNFVVVMVSKAK-STTAASTPSSEAPNQ 93
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 151/392 (38%), Gaps = 69/392 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V ++T+ G ++ V+P ++++K + + ++V P + LI+ K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELK--VLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS---APPTSTQPTTTSQTPAP 117
E+ + +++ + SK A Q Q SS P P + AP
Sbjct: 58 ESNIQPGQAIIMHVQSSK------------NAKQPQKKSSEKRKSPKKESPIKVQEAAAP 105
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQ 177
AP Q E+ P P + AP P +A LV N A VQ
Sbjct: 106 --APTQPKEEATQKPEQPGHSMV-----APLPE---------LEAKHQLVDPPNFNALVQ 149
Query: 178 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 237
+ +MG D ALRAA NP+RA E+L + +P + + N
Sbjct: 150 TLTEMGFSEGD---AAHALRAAVYNPDRAAEFLLTNY-----IPEMPQLYDPNDLANEEE 201
Query: 238 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 297
+ + A TL FLR Q L P
Sbjct: 202 DYDDDDNSD---------------------EEDDEQASTLQFLRQLHQNPELL------P 234
Query: 298 QILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA 357
L++L NP + LI+ FL + + + L + T EE++A
Sbjct: 235 IYLKDLADNNPAVAPLIRNDPASFLVSLGVNPSEFDLSSLKHKSEFETLMEKFTEEEQKA 294
Query: 358 IERLEAMGFDRALVLEVFFACNKNEELAANYL 389
I RLE +GFD V++VF AC+++E L + L
Sbjct: 295 IHRLEKLGFDTTDVIQVFEACDRDENLTKSCL 326
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 19/128 (14%)
Query: 285 QFQALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRL--------INEPVEGG 332
Q Q LR +Q+NP+++Q +L NP + +I E F+R + +EG
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTFLGAGGEDLGFDIEGE 291
Query: 333 EGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385
+ ++LG A + ++ ++ AI RL +GFDR LV++V+ AC+KNEE+A
Sbjct: 292 DADMLGGADGDGEGADAPGTVRIPISEQDENAINRLCELGFDRNLVIQVYLACDKNEEVA 351
Query: 386 ANYLLDHM 393
A+ L M
Sbjct: 352 ADILFRDM 359
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 62/172 (36%)
Query: 281 RNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINEPVE------ 330
RN QF +LR +VQ+NP Q+L ++G+Q P L++ I +Q +FL ++NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366
Query: 331 ----------------------------GGEGNVLGQLASAMP----------------- 345
G G+ G +A+
Sbjct: 367 GADAGGADAGHDGADDGRRRRAAPGHRAGHRGHAAGATRTALTDGRRGHGAGGMPPGMMG 426
Query: 346 -------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
Q + ++ EE A+ RL MGFDR + + AC+KNE LAAN L+
Sbjct: 427 GGGEGGPQVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLLM 478
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 50/120 (41%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNI-----------ETVQGSDV--------------- 38
VKTLKG F IEV P + V++VK I E V G+ +
Sbjct: 6 VKTLKGGKFTIEVDPSNSVAEVKAVIRGGGDHAHDPEEVVAGNFLNSSWRSSNSKIQTGL 65
Query: 39 ------------------------YPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
PA+ LIH GKVLKD +E + N F+VVM+
Sbjct: 66 NSEMRLAPTRSHALLFRQENTKSELPAAGMKLIHSGKVLKDDEKIESCNIKPNDFLVVMI 125
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 12/114 (10%)
Query: 287 QALRTMVQANPQILQ----ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 342
Q LR +V NP +LQ +L + NP L + + L+++ G EG LG
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL--AAAGAEG--LGDDDE 340
Query: 343 A-MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392
+P Q V +T EE ++++RLE +GF R VLE + AC+KNEELAANYL ++
Sbjct: 341 GPLPPGAQVVQLTQEEMQSVQRLEQLGFSRQAVLEAYLACDKNEELAANYLFEN 394
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Query: 162 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
A S LV G + E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP+
Sbjct: 93 AESTLVTGESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 144
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 36/213 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + +V ++ V+++K + +Q + AS Q LI+ GKVL++ L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+V M+ K K +T ++ P + QP TT
Sbjct: 58 TYNITENGFLVCMVKKPK----------------EETVATTAP-AVQPATT--------- 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
P + + PA P PAP P + S S+ + G EA + ++
Sbjct: 92 -----PVAPTSAPSTTPASTSTPTNTPAPTPSPASSTSPSGGNSSFIVGPEYEAAITNLM 146
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
+M G +RE VIRALRA++NN ERA + L SG
Sbjct: 147 EMSGA--NREMVIRALRASFNNAERAADILLSG 177
>gi|195609762|gb|ACG26711.1| hypothetical protein [Zea mays]
Length = 38
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 364 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 1 MGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 35
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 104/225 (46%), Gaps = 27/225 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP----------TT 110
+ + +N +V+ K K+ A + +A SSAP +S P TT
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGS 170
+ T A V PP +A A A APA AP +SV++ YG A NL
Sbjct: 116 SPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAPNL---- 170
Query: 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+ ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 171 -----IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 92/215 (42%), Gaps = 46/215 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++K FE+E V +K+ I + SD Q LI G++LKD LE
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN F+VVM G ++ PA + T+S + + +TPA +
Sbjct: 61 SLNFKENDFLVVM--------GGKRPAASKPAADKKDTAS--------SKSEETPASS-- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLEATVQQIL 180
S P + + + AP+ P +S E ++ +
Sbjct: 103 -------STTEPKPASTTTSSSTPAAPSSGPAAS------------------EESLNTLT 137
Query: 181 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
MG +DR RAL AA+ N ERAVEYL +GIP
Sbjct: 138 AMG---FDRAQAERALSAAFGNIERAVEYLQNGIP 169
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 43/51 (84%), Gaps = 3/51 (5%)
Query: 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
+LV G+ L+ +VQ +++MG ++RE V+RAL+A++NNP+RAVEYL++GIP
Sbjct: 128 DLVTGAALQTSVQNMIEMG---FEREQVLRALKASFNNPDRAVEYLFNGIP 175
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTKSKVSSSGA 84
K+ E +FVV M+TK K ++ A
Sbjct: 114 KIDEKNFVVFMVTKPKAVTTPA 135
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus
anophagefferens]
Length = 371
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKSK 78
+ V E SF+V M+TK K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|402580657|gb|EJW74606.1| hypothetical protein WUBG_14486, partial [Wuchereria bancrofti]
Length = 80
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395
A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 30 AIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 78
>gi|109126538|ref|XP_001116344.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Macaca
mulatta]
Length = 53
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 37/43 (86%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 4 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 46
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVAENSFVVVMLTKSK 78
++ E +FVVVM+TK+K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|389583319|dbj|GAB66054.1| DNA repair protein RAD23, partial [Plasmodium cynomolgi strain B]
Length = 117
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 348 VTVTP---EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396
+ +TP E E+I++LE++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 30 IPITPLNENEMESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 81
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 164 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
S+ V G+ L+ TV + +MG + RE V+RALRA++NNP+RAVEYL +GIP
Sbjct: 133 SSFVTGNVLQETVNNMTEMG---FPREQVLRALRASFNNPDRAVEYLMNGIP 181
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 34/161 (21%)
Query: 53 LKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
++D +L++ KV ++ FVVVM +VS P + A+ S TS T
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM------------SVSKLPRDIAKEAS----TSVLSNLTD 44
Query: 113 QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNL 172
E P P+ +P + A P S+ ++ S+LV G +
Sbjct: 45 --------------EGKPMPSEKSPNVDVIESVNVATTP-STATNTLSFLKSSLVLGEDF 89
Query: 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213
E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 90 ESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 195 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 254
ALRAAY NP+RAVE+L +GIP Q N PA P+ +S
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVM-----------QRMNEPA-------INPSASSERM 152
Query: 255 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ----ILQELGKQNPHL 310
++ D + ++ + + L QF +R++VQANP+ ++Q+L +P +
Sbjct: 153 SSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEV 210
Query: 311 MRLIQEHQTDFLRLINEPVE-------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEA 363
+ LIQ+ FLR++ P + GG NV S + + EER AI+RL
Sbjct: 211 IGLIQQDLEGFLRIMGNPGQTEFTTSAGGGDNVPHDSVS-----IPLREEERVAIQRLVE 265
Query: 364 MG 365
+G
Sbjct: 266 LG 267
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 58.9 bits (141), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|12084372|pdb|1F4I|A Chain A, Solution Structure Of The Hhr23a Uba(2) Mutant P333e,
Deficient In Binding The Hiv-1 Accessory Protein Vpr
Length = 45
Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+E+EAIERL+A+GF+ +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 1 QEKEAIERLKALGFEESLVIQAYFACEKNENLAANFLLS--QNFDD 44
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 43/58 (74%), Gaps = 4/58 (6%)
Query: 277 LDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVE 330
L+FLRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV+
Sbjct: 6 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 163 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 218
A+ LV + E + Q+++ G ++R+ V+RALRAA+NNP+RA EYL++GIP
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHV 129
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 277 LDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPV 329
L+FLRN QFQ +R ++Q NP +L Q++G++NP L++ I +HQ F++++NEPV
Sbjct: 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 675 DYSIQKDSTLHLVL 688
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|343470186|emb|CCD17040.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 230
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 40/209 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L G E EV P+ KV D+K+ +E + Y + + VL+D+ T+
Sbjct: 56 MKIILRSLTGKEHEQEVTPDTKVQDIKRVLE-----EEYAPESLRICYNNSVLEDLETMG 110
Query: 61 ENKVAENSFVVVMLTKSK-----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
V + S V+V + K + V+ + T+S A Q Q + P + +
Sbjct: 111 NLGVGDKS-VLVFVGKKRTIQKLVAKAIEDTLSLASVGQTQEQN----VKEAPHVSEGSE 165
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE-A 174
APT A S P + P+A APAP + S++ A ++ A
Sbjct: 166 APTTA---SAPTAGEQPSAETAAPAP-------------------RTGSSVAATQGVDPA 203
Query: 175 TVQQILDMGGGSWDRETVIRALRAAYNNP 203
+ I MG DR+ + ALRAAY NP
Sbjct: 204 LIDSIAAMGFE--DRDQIALALRAAYMNP 230
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTKSKVSSS 82
+ FVVVMLTK K + +
Sbjct: 64 GFDSSKFVVVMLTKKKAAET 83
>gi|7245807|pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 46
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANP----QILQELGKQNPHLMRLIQEHQTDFLRLINE 327
+ L FLRN QFQ +R VQ +P Q+LQE+G+ NP L++LI ++Q F+ L+NE
Sbjct: 1 SAVADLSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK---------SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
+ K+ + F+VVM K K S G A + + T ++++P+T
Sbjct: 60 SQYKLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEPATSASKPST 119
>gi|254568464|ref|XP_002491342.1| hypothetical protein [Komagataella pastoris GS115]
gi|238031139|emb|CAY69062.1| hypothetical protein PAS_chr2-1_0892 [Komagataella pastoris GS115]
Length = 383
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 5 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
KV S + L KS + G S S A AN + +TS+ +T
Sbjct: 62 FYKV--QSGHTIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNT 104
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 133 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 192
Query: 73 MLTK 76
++ +
Sbjct: 193 LVAR 196
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 27/108 (25%)
Query: 273 GAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINEP 328
G L+FLR+ QFQ +R ++Q NP +L L G++NP L++ I HQ F++++NEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
Query: 329 VEGGEGNVLGQLAS-------------AMPQA--VTVTPEEREAIERL 361
G+LA PQ + VTP+E+EAIER+
Sbjct: 61 P--------GELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIERV 100
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|390367531|ref|XP_783007.3| PREDICTED: ubiquilin-1-like [Strongylocentrotus purpuratus]
Length = 607
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VKT K IE+ P+ + ++K I + V Q LI GK+LKD TL+
Sbjct: 16 ISVVVKTPKDKE-TIEINPDSTIKELKDEISKKFSTTV---EQLCLIFAGKILKDNDTLK 71
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS----AAPAN 93
+N + +N VV ++ +SK +G ST + A+PAN
Sbjct: 72 QNNIKDN-MVVHLVIRSKKDQAGTSTATTSSPASPAN 107
>gi|328352143|emb|CCA38542.1| mitochondrial intermediate peptidase [Komagataella pastoris CBS
7435]
Length = 1191
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 813 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 869
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQ----- 113
KV + L KS + G S S A AN + +TS+ A TS+ P+ +
Sbjct: 870 FYKVQSGH--TIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNTSSAPSNIAAGQGAF 926
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAP 147
P + + P P+A P P P
Sbjct: 927 NPLAGLTGARYAGMDVPMPSASMFGPDGGMGPMP 960
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393
+ ++ EE A+ RL +GF+R + + AC+KNE LAAN+LL+ M
Sbjct: 342 IRLSEEEGAAVARLTELGFERTDAAQAYLACDKNEALAANFLLNDM 387
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +EI K+S++K E + PAS Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEITFNSSIKISELK---ELIAEKSSIPASSQRLIYSGKVLKDTETAE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
K+ +NS + ++ + + + A++ S+ AQT SS P++
Sbjct: 61 SYKI-QNSHTIHLVKSANAAPTPATSESSTTQTAAQTPSSNIPSN 104
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 98 TSSAPPTSTQPT--TTSQTPAPTVAPPQS-----VPESAPPPAAPAPAPAPAPAPAPA-- 148
TS + T+PT T + P P A P P+ PP PAP PAP
Sbjct: 7 TSGSKEFGTRPTQNTPEEAPKPQEALPAHEEPAPKPQEEAPPVHEEPAPKQQEDPAPQVQ 66
Query: 149 -PAPVSSVSDVYGQ----AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNP 203
P P SV+ Q + S+ ++ S+L V QI+DMG D E +ALR +NN
Sbjct: 67 QPTPTISVTQPQHQTSHTSGSDALSFSDL---VDQIVDMGFSKADAE---KALRKNHNNV 120
Query: 204 ERAVEYLYSG 213
RA+EYL SG
Sbjct: 121 TRAIEYLLSG 130
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
+ + + S + ++L + + + G P + +SSAP
Sbjct: 58 DYNIQKESTLHLVL-RLRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q A + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPDCTREAMK--LVYKGKVLDDATTVG 58
Query: 61 ENKVAENSFVVVML 74
+N+V E F+VV +
Sbjct: 59 DNQVTEQGFIVVFI 72
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 272 AGAGTLDFLRNSQQFQALRTMVQANPQILQEL----GKQNPHLMRLIQEHQTDFLRLINE 327
AG L+FLR+ QFQ +R ++Q NP +L L G++NP L++ I HQ F++++NE
Sbjct: 7 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 66
Query: 328 P 328
P
Sbjct: 67 P 67
>gi|294872216|ref|XP_002766209.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
gi|239866868|gb|EEQ98926.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKK V+ S V PA QQ LI++G++LKD T+
Sbjct: 3 INITFKVSGGSSFEQSFDPETTIGDVKKG--CVEKSGV-PAEQQRLIYKGRILKDADTVG 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|425772801|gb|EKV11188.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum PHI26]
gi|425782032|gb|EKV19963.1| RNA polymerase I specific transcription initiation factor Rrn7,
putative [Penicillium digitatum Pd1]
Length = 770
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G ++V+ D + +VK I+ +G P QQ LI GK L+D TL
Sbjct: 606 MQIFVKTLTGKTITLDVESSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 662
Query: 61 ENKVAENSFVVVML 74
+ + + S + ++L
Sbjct: 663 DYNIQKESTLHLVL 676
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 344 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+P ++ ++R +E++ AMG + +E +F C KN E+A Y ++ +FED
Sbjct: 380 LPTLAELSDDDRAGVEQIVAMGIPESKAIESYFMCGKNVEMAVQYYFENPQDFED 434
>gi|255074919|ref|XP_002501134.1| predicted protein [Micromonas sp. RCC299]
gi|226516397|gb|ACO62392.1| predicted protein [Micromonas sp. RCC299]
Length = 308
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ VK G+ + V+ V ++K +E +D P++QQ LI++G VLKD TLE
Sbjct: 6 IHVKATSGSKITVSVELSTTVGELKTTLEAADKADT-PSAQQRLIYKGHVLKDEKTLESY 64
Query: 63 KVAENSFV 70
V E+ +
Sbjct: 65 GVGEDHVI 72
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum
CBS 127.97]
Length = 478
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D T L E F +T ++ ++ T +A+ T SA T S
Sbjct: 249 DGTILIERNDENERFYGRKVTVKEIMAAHVRTENASVRMLTHTLHSAQGDKQFDQTPSGV 308
Query: 115 PAPTVAPPQSV-PESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYGQAASNLVAGSNLE 173
PT P + PE A APA P + + + +L N E
Sbjct: 309 AVPTGPSPSDIAPEDLANSNLMAHGALAAPAQTATETPAT-----FNDRSVHLDGVQNEE 363
Query: 174 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216
A V Q+ MG + R + RA+RAA NP+RAVEYL +G P+
Sbjct: 364 AVVAQMESMG---FARIDIDRAMRAASFNPDRAVEYLLNGFPD 403
>gi|401419818|ref|XP_003874398.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490634|emb|CBZ25896.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 317
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV V++ KK I ET++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGNQHTVEVPDFSITVAEFKKQIAETLE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + + V+ + +SK S++ ST +A+ A +S+P + QP+TT+
Sbjct: 57 LSAIGMEDGN--VIHVVRSKKSAAVPSTTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 398
+R +++++ AMG A +E +F C KN E+A Y ++ +F+D
Sbjct: 403 DRASVQQIVAMGIPEAKAIECYFMCGKNVEMAVQYYFENPQDFDD 447
>gi|308463692|ref|XP_003094118.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
gi|308248530|gb|EFO92482.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
Length = 518
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLIHQGKVLKDVT 57
+KVFVK+ +E+E+ P+ VSD+K + + P + Q +I+ GK+LKD
Sbjct: 8 IKVFVKS-PTQKYEVEIAPDATVSDLKDKVLVL-----VPTANKEQICIIYTGKILKDEE 61
Query: 58 TLEENKVAENSFVVVML 74
TL NK+ + V +++
Sbjct: 62 TLSHNKIGDGHTVHLVI 78
>gi|149239781|ref|XP_001525766.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146449889|gb|EDK44145.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 382
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ FE+ P+ V ++K+ I T + PA+ Q LI+ GKVLKD T+E
Sbjct: 4 ITITIKSSGDQKFEVTFDPKITVLELKELIATKSST---PAASQRLIYSGKVLKDDQTVE 60
Query: 61 ENKVAENSFVVVML 74
KV +NS V ++
Sbjct: 61 SYKV-QNSHTVHLV 73
>gi|440297658|gb|ELP90315.1| UV excision repair protein rad23, putative [Entamoeba invadens
IP1]
Length = 330
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ VKT++GT E EV+ + +K+ I Q D S L+ + ++LKD T T+
Sbjct: 1 MKINVKTVQGTSSEYEVQDATTIGQLKEMIHEKQNIDAASIS---LVLKSRMLKDDTQTI 57
Query: 60 EENKVAENSFVVVMLTKS 77
+ + EN FV++++ K+
Sbjct: 58 QAVGIKENDFVIMVVRKN 75
>gi|401410066|ref|XP_003884481.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
gi|325118899|emb|CBZ54451.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
Length = 405
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K GT F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGTQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDDDLIST 61
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT----PAP 117
+ V + + ++ + + V++S + +A + AQ + A T+ TS+T A
Sbjct: 62 HDVQDGHIIHLVKSAAAVAASSNTAPAAGATSAAQPSPDASGTNGSLGGTSRTASSLAAR 121
Query: 118 TVAPPQSVPESAPPPAAPAPAP 139
T + S ESAPP + P P
Sbjct: 122 TASTNASPAESAPPLSNPTADP 143
>gi|154345506|ref|XP_001568690.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066032|emb|CAM43817.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 317
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-KVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV + V++ K I ET+ PA +Q +I +GKVLKD
Sbjct: 1 MTVTIKLANGNQHTVEVADFNITVAEFKNQIAETL----AIPAEEQRIILRGKVLKDEGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + + + + V+ +K V+++ A+ VS+ P TS +Q+PA T
Sbjct: 57 LSAIGMEDGNVIHVVRSKKSVATAPATNVSSTPGTSDTVTS----------LNTQSPA-T 105
Query: 119 VAPPQSVPESAPPPAA 134
VA ++P++ P A
Sbjct: 106 VATQPALPQATANPYA 121
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ F+V+M+ K
Sbjct: 58 SYNITDSGFIVMMIKK 73
>gi|221486256|gb|EEE24517.1| ubiquitin, putative [Toxoplasma gondii GT1]
Length = 399
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|237833513|ref|XP_002366054.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|211963718|gb|EEA98913.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|221508044|gb|EEE33631.1| ubiquitin, putative [Toxoplasma gondii VEG]
Length = 399
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|157876560|ref|XP_001686626.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
gi|68129701|emb|CAJ09007.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
Length = 317
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +K G+ +EV P+ ++ + + + ++ PAS+Q +I +GKVLKD L
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSITVAEFKKQIAEALEI-PASEQRIIMRGKVLKDDGVLS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST---QPTTTS 112
+ + + + V+ +K V+ ++ S+ T +++ PTS+ QP+TT+
Sbjct: 59 AIGMEDGNVIHVVRSKKNVAVPSSTNASS-------TLAASDPTSSPNVQPSTTT 106
>gi|341892156|gb|EGT48091.1| hypothetical protein CAEBREN_08871 [Caenorhabditis brenneri]
Length = 684
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 76 KSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP-QSVPESA-PPPA 133
K V+++ AS V PAN A T+ AP T+ P TT PAP PP + P SA PPA
Sbjct: 162 KPPVTTTPASAVKP-PANPAPNTTPAPNTTPAPNTT---PAPATKPPVTTTPASAVKPPA 217
Query: 134 APAPAPAPAPAPAPAPA 150
PAP PAP PAPA
Sbjct: 218 TPAPNTTPAPNTTPAPA 234
>gi|238883910|gb|EEQ47548.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 339
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +EI P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEITFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|68477671|ref|XP_717148.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
gi|68477834|ref|XP_717069.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438766|gb|EAK98092.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438848|gb|EAK98173.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
Length = 339
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|294886433|ref|XP_002771708.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
gi|239875444|gb|EER03524.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
Length = 348
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 353 EEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLD 391
E+R A +E L +MGF D A LE C+ N ELA NYL D
Sbjct: 302 EQRYASELETLRSMGFVDTAANLEALRVCDGNVELAVNYLFD 343
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV ++ + + +V E+KV +K E + + + Q LI+ GK+L++ L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ EN F+V M+ K K S
Sbjct: 58 TYNITENGFIVCMVKKPKEES 78
>gi|146103390|ref|XP_001469550.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
gi|134073920|emb|CAM72659.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
Length = 317
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS--DVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVT 57
M V +K G+ +EV P+ V+ + KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSVTVAEFKKQIAEMLE----IPASEQRIIMRGKVLKDDA 55
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + S V+ + +SK S + AS+ +A+ A +S+P + QP+TT+
Sbjct: 56 VLSAIGMEDGS--VIHVVRSKKSGAAASSTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + + + A Q ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 61 ENKVAENSFVVVMLT 75
E K+ E ++ M++
Sbjct: 58 EFKIKEGDSIIFMIS 72
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,383,671,402
Number of Sequences: 23463169
Number of extensions: 308976127
Number of successful extensions: 8207107
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 34194
Number of HSP's successfully gapped in prelim test: 63295
Number of HSP's that attempted gapping in prelim test: 5409114
Number of HSP's gapped (non-prelim): 1400817
length of query: 398
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 253
effective length of database: 8,957,035,862
effective search space: 2266130073086
effective search space used: 2266130073086
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)