Query 015941
Match_columns 398
No_of_seqs 305 out of 1476
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 4.2E-74 1.4E-78 576.9 30.3 350 1-397 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 4E-36 1.4E-40 270.2 9.9 123 273-395 21-171 (171)
3 3m62_B UV excision repair prot 99.8 1.2E-19 4E-24 151.7 7.9 77 1-80 2-78 (106)
4 4fbj_B NEDD8; effector-HOST ta 99.8 8.5E-19 2.9E-23 141.3 9.9 80 1-83 1-80 (88)
5 3phx_B Ubiquitin-like protein 99.8 1.1E-18 3.7E-23 137.1 10.0 75 1-78 5-79 (79)
6 1uel_A HHR23B, UV excision rep 99.8 2.3E-18 7.8E-23 140.8 12.2 78 1-81 1-81 (95)
7 4dwf_A HLA-B-associated transc 99.8 1E-18 3.5E-23 140.7 9.5 75 1-79 6-80 (90)
8 2wyq_A HHR23A, UV excision rep 99.7 3.8E-18 1.3E-22 135.6 9.9 76 1-79 6-84 (85)
9 3v6c_B Ubiquitin; structural g 99.7 3.1E-18 1E-22 138.6 9.5 74 1-77 18-91 (91)
10 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.6E-18 1.9E-22 137.9 10.6 78 1-81 2-79 (96)
11 4a20_A Ubiquitin-like protein 99.7 2.4E-18 8.1E-23 142.2 8.3 74 1-77 20-97 (98)
12 2kk8_A Uncharacterized protein 99.7 3.1E-18 1.1E-22 137.3 8.7 72 1-75 11-83 (84)
13 3plu_A Ubiquitin-like modifier 99.7 4.7E-18 1.6E-22 138.5 8.9 71 1-74 22-92 (93)
14 2lxa_A Ubiquitin-like protein 99.7 2.5E-18 8.6E-23 139.0 6.9 73 1-76 2-78 (87)
15 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.3E-17 4.4E-22 138.9 11.2 76 1-80 18-93 (106)
16 4hcn_B Polyubiquitin, ubiquiti 99.7 8.8E-18 3E-22 138.0 10.0 75 1-78 23-97 (98)
17 1ndd_A NEDD8, protein (ubiquit 99.7 1.5E-17 5E-22 128.6 10.3 75 1-78 1-75 (76)
18 3dbh_I NEDD8; cell cycle, acti 99.7 6.8E-18 2.3E-22 134.8 8.7 75 1-78 13-87 (88)
19 1pve_A HHR23B, UV excision rep 99.7 1.3E-18 4.6E-23 134.8 3.9 58 274-331 3-64 (72)
20 2faz_A Ubiquitin-like containi 99.7 1.3E-17 4.5E-22 130.4 9.2 73 1-76 3-77 (78)
21 3a9j_A Ubiquitin; protein comp 99.7 2.7E-17 9.2E-22 127.1 10.7 75 1-78 1-75 (76)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 1.4E-17 4.7E-22 132.0 9.0 76 1-79 4-79 (85)
23 1wy8_A NP95-like ring finger p 99.7 3E-17 1E-21 131.7 11.0 77 1-80 8-86 (89)
24 2f4m_B UV excision repair prot 99.7 8.4E-18 2.9E-22 126.6 7.1 55 275-329 2-60 (61)
25 1ttn_A DC-UBP, dendritic cell- 99.7 1.3E-17 4.4E-22 139.1 9.0 77 1-80 24-100 (106)
26 2dzi_A Ubiquitin-like protein 99.7 2.2E-17 7.5E-22 129.7 9.5 73 1-76 8-80 (81)
27 1uh6_A Ubiquitin-like 5; beta- 99.7 8.2E-18 2.8E-22 139.2 7.3 71 1-74 29-99 (100)
28 3mtn_B UBA80, ubcep1, ubiquiti 99.7 2.4E-17 8.2E-22 130.4 9.6 76 1-79 4-79 (85)
29 2uyz_B Small ubiquitin-related 99.7 1.5E-17 5.1E-22 130.6 8.1 75 1-78 4-78 (79)
30 4eew_A Large proline-rich prot 99.7 2.1E-17 7.1E-22 132.5 9.1 71 1-75 18-88 (88)
31 2hj8_A Interferon-induced 17 k 99.7 1.5E-17 5.2E-22 133.9 8.4 76 1-79 5-80 (88)
32 1wgd_A Homocysteine-responsive 99.7 2.8E-17 9.7E-22 133.5 10.0 77 1-80 8-90 (93)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3.4E-17 1.2E-21 130.7 10.3 76 1-79 8-83 (87)
34 1sif_A Ubiquitin; hydrophobic 99.7 3.2E-17 1.1E-21 132.1 9.8 76 1-79 10-85 (88)
35 1v2y_A 3300001G02RIK protein; 99.7 1.3E-17 4.4E-22 139.4 7.3 77 1-80 8-100 (105)
36 2kan_A Uncharacterized protein 99.7 4.6E-17 1.6E-21 133.1 10.2 76 1-80 16-92 (94)
37 1wia_A Hypothetical ubiquitin- 99.7 4.6E-17 1.6E-21 132.7 10.1 74 1-80 8-82 (95)
38 1wyw_B Ubiquitin-like protein 99.7 3.1E-17 1.1E-21 134.6 8.5 75 1-78 22-96 (97)
39 1v5o_A 1700011N24RIK protein; 99.7 6E-17 2.1E-21 134.1 9.8 77 1-80 8-89 (102)
40 3vdz_A Ubiquitin-40S ribosomal 99.7 7.5E-17 2.6E-21 135.7 9.8 75 1-78 36-110 (111)
41 1yx5_B Ubiquitin; proteasome, 99.7 1.2E-16 4.1E-21 130.9 10.7 76 1-79 1-76 (98)
42 2bwf_A Ubiquitin-like protein 99.7 1.1E-16 3.6E-21 124.5 9.7 71 1-75 5-75 (77)
43 1wju_A NEDD8 ultimate buster-1 99.7 8.8E-17 3E-21 133.1 9.4 73 2-78 17-93 (100)
44 1wx8_A Riken cDNA 4931431F19; 99.7 4.8E-17 1.6E-21 132.7 7.7 76 1-80 18-93 (96)
45 3b1l_X E3 ubiquitin-protein li 99.5 2.9E-18 9.9E-23 133.4 0.0 75 1-78 1-75 (76)
46 1j8c_A Ubiquitin-like protein 99.7 1.3E-16 4.4E-21 137.2 10.2 76 1-80 33-108 (125)
47 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.4E-16 4.9E-21 131.8 10.1 74 1-78 26-99 (101)
48 1yqb_A Ubiquilin 3; structural 99.7 1.1E-16 3.9E-21 132.2 8.9 75 1-79 23-97 (100)
49 1ify_A HHR23A, UV excision rep 99.7 5.3E-17 1.8E-21 117.5 5.4 49 165-216 1-49 (49)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2.9E-16 9.8E-21 133.4 10.8 77 1-77 17-100 (116)
51 2l7r_A Ubiquitin-like protein 99.7 1.7E-16 5.8E-21 129.3 8.9 73 1-78 20-92 (93)
52 3l0w_B Monoubiquitinated proli 99.7 3.5E-16 1.2E-20 141.1 11.9 78 1-81 1-78 (169)
53 1wgg_A Ubiquitin carboxyl-term 99.7 2.7E-16 9.3E-21 129.0 8.8 72 1-77 8-80 (96)
54 1dv0_A DNA repair protein HHR2 99.6 2.4E-17 8.4E-22 118.2 1.8 47 351-397 1-47 (47)
55 2ojr_A Ubiquitin; lanthide-bin 99.6 6.6E-16 2.3E-20 129.7 10.7 75 1-78 36-110 (111)
56 1x1m_A Ubiquitin-like protein 99.6 4.7E-16 1.6E-20 129.9 9.7 74 1-77 13-101 (107)
57 4ajy_B Transcription elongatio 99.6 3.8E-16 1.3E-20 132.6 8.1 73 1-76 1-81 (118)
58 1se9_A Ubiquitin family; ubiqu 99.6 5.7E-16 1.9E-20 133.1 9.3 79 1-79 17-106 (126)
59 3rt3_B Ubiquitin-like protein 99.6 6.4E-16 2.2E-20 136.8 9.9 76 1-79 82-157 (159)
60 2fnj_B Transcription elongatio 99.6 3.4E-16 1.2E-20 133.1 7.7 72 1-75 1-80 (118)
61 2kdi_A Ubiquitin, vacuolar pro 99.6 1.1E-15 3.7E-20 129.3 10.7 77 1-80 10-86 (114)
62 2kdb_A Homocysteine-responsive 99.6 3.8E-16 1.3E-20 129.1 7.1 71 1-73 24-99 (99)
63 2gow_A HCG-1 protein, ubiquiti 99.6 5.6E-16 1.9E-20 133.3 8.4 74 1-77 18-101 (125)
64 3m63_B Ubiquitin domain-contai 99.6 2.3E-16 7.9E-21 130.6 5.6 72 1-76 29-100 (101)
65 1we6_A Splicing factor, putati 99.6 7.2E-16 2.5E-20 129.4 8.4 76 1-79 28-107 (111)
66 1wxv_A BAG-family molecular ch 99.6 1.5E-15 5.2E-20 122.9 9.9 73 1-77 8-86 (92)
67 1v5t_A 8430435I17RIK protein; 99.6 1.2E-15 4.3E-20 123.4 9.2 72 1-76 8-83 (90)
68 3u30_A Ubiquitin, linear DI-ub 99.6 1.6E-15 5.5E-20 136.2 10.3 75 1-78 21-95 (172)
69 3q3f_A Ribonuclease/ubiquitin 99.6 1.1E-15 3.6E-20 140.3 9.1 77 1-80 106-182 (189)
70 2kd0_A LRR repeats and ubiquit 99.6 2.6E-15 8.9E-20 120.3 9.6 70 3-75 14-83 (85)
71 3rt3_B Ubiquitin-like protein 99.6 2.3E-15 8E-20 133.2 10.0 72 1-75 3-76 (159)
72 1v86_A DNA segment, CHR 7, way 99.6 1.1E-15 3.9E-20 125.0 6.9 71 1-76 18-88 (95)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.9E-15 1.3E-19 124.1 9.6 73 1-76 25-100 (105)
74 3u5e_m 60S ribosomal protein L 99.6 1.2E-16 4E-21 137.7 0.2 77 1-80 1-77 (128)
75 3b08_A Polyubiquitin-C, ubiqui 99.6 9.5E-15 3.3E-19 127.3 10.7 74 1-77 1-74 (152)
76 3u30_A Ubiquitin, linear DI-ub 99.6 5.3E-15 1.8E-19 132.9 8.5 75 1-78 97-171 (172)
77 2daf_A FLJ35834 protein; hypot 99.6 9.2E-15 3.2E-19 123.6 9.4 73 2-77 17-90 (118)
78 3b08_A Polyubiquitin-C, ubiqui 99.6 1.1E-14 3.8E-19 126.8 10.3 75 1-78 77-151 (152)
79 3u5c_f 40S ribosomal protein S 99.6 4.6E-16 1.6E-20 138.2 1.0 77 1-80 1-77 (152)
80 1we7_A SF3A1 protein; structur 99.6 1.2E-14 4.2E-19 122.7 9.7 77 1-80 26-112 (115)
81 2dzj_A Synaptic glycoprotein S 99.5 8.3E-15 2.8E-19 118.4 6.1 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 2E-14 6.8E-19 119.0 6.6 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.5 7E-14 2.4E-18 136.9 9.3 74 1-77 234-307 (307)
84 4b6w_A Tubulin-specific chaper 99.4 1.2E-13 4.1E-18 111.2 5.8 73 2-77 4-85 (86)
85 1wf9_A NPL4 family protein; be 99.4 2.1E-13 7.1E-18 113.9 7.2 71 1-75 8-94 (107)
86 2xzm_9 RPS31E; ribosome, trans 99.4 2E-14 6.9E-19 131.5 0.3 72 1-80 1-72 (189)
87 2kjr_A CG11242; UBL, ubiquitin 99.4 5.9E-13 2E-17 109.1 9.0 70 1-73 16-93 (95)
88 2lbc_A Ubiquitin carboxyl-term 99.4 1E-12 3.4E-17 113.0 10.3 41 356-396 80-121 (126)
89 2kj6_A Tubulin folding cofacto 99.4 1.1E-12 3.8E-17 107.9 8.3 71 2-75 16-95 (97)
90 1v6e_A Cytoskeleton-associated 99.4 1.4E-12 4.7E-17 106.4 8.3 73 1-76 8-88 (95)
91 2kzr_A Ubiquitin thioesterase 99.3 1.2E-12 4E-17 104.9 7.0 71 1-75 1-77 (86)
92 2io1_B Small ubiquitin-related 99.3 2.8E-12 9.7E-17 104.8 7.9 76 1-79 8-83 (94)
93 2g3q_A Protein YBL047C; endocy 99.3 1.9E-12 6.5E-17 90.8 5.7 40 172-214 4-43 (43)
94 1vg5_A RSGI RUH-014, rhomboid 99.3 2.3E-12 7.8E-17 100.5 6.2 44 169-215 26-69 (73)
95 1vej_A Riken cDNA 4931431F19; 99.3 3.9E-12 1.3E-16 99.4 7.3 46 169-217 26-72 (74)
96 2bwb_A Ubiquitin-like protein 99.3 3.7E-12 1.3E-16 90.8 5.3 41 170-213 5-46 (46)
97 3shq_A UBLCP1; phosphatase, hy 99.3 2.7E-12 9.1E-17 126.7 6.1 71 1-75 6-79 (320)
98 1t0y_A Tubulin folding cofacto 99.3 1.2E-11 4.1E-16 105.6 9.0 74 1-77 7-88 (122)
99 1wm3_A Ubiquitin-like protein 99.3 1.8E-11 6E-16 95.0 9.2 71 1-74 2-72 (72)
100 2io0_B Small ubiquitin-related 99.3 2.3E-11 7.9E-16 98.9 9.7 76 1-79 6-81 (91)
101 2knz_A Ubiquilin-4; cytoplasm, 99.2 1E-11 3.5E-16 91.1 5.6 43 170-215 9-52 (53)
102 3a4r_A Nfatc2-interacting prot 99.2 5.4E-11 1.8E-15 94.0 9.6 70 1-73 8-78 (79)
103 1veg_A NEDD8 ultimate buster-1 99.2 1.3E-11 4.5E-16 98.3 6.0 44 172-218 29-75 (83)
104 2d07_B Ubiquitin-like protein 99.2 4.8E-11 1.6E-15 97.3 8.8 74 1-77 18-91 (93)
105 1wz0_A Ubiquitin-like protein 99.2 4.7E-11 1.6E-15 99.4 8.8 76 1-79 25-100 (104)
106 2jy5_A Ubiquilin-1; UBA, alter 99.2 2.7E-11 9.1E-16 88.5 6.2 42 169-213 9-51 (52)
107 4ae4_A Ubiquitin-associated pr 99.2 2.1E-10 7.1E-15 97.5 12.2 40 353-392 75-114 (118)
108 1wji_A Tudor domain containing 99.2 2.4E-11 8.2E-16 92.2 5.6 42 172-216 9-50 (63)
109 2g3q_A Protein YBL047C; endocy 99.1 4.2E-11 1.4E-15 83.9 5.3 38 355-392 5-42 (43)
110 1wr1_B Ubiquitin-like protein 99.1 3.8E-11 1.3E-15 89.6 5.1 43 169-214 14-57 (58)
111 2dna_A Unnamed protein product 99.1 4.9E-11 1.7E-15 91.2 5.6 45 170-217 17-62 (67)
112 2k8h_A Small ubiquitin protein 99.1 9.1E-11 3.1E-15 98.6 7.4 75 1-78 27-101 (110)
113 2dak_A Ubiquitin carboxyl-term 99.1 4.2E-11 1.4E-15 90.8 4.2 42 172-216 9-50 (63)
114 2eke_C Ubiquitin-like protein 99.1 1.6E-10 5.6E-15 96.4 8.1 73 1-77 32-104 (106)
115 1wiv_A UBP14, ubiquitin-specif 99.1 1.3E-10 4.3E-15 90.8 5.6 41 172-215 29-69 (73)
116 1z96_A DNA-damage, UBA-domain 99.1 1.6E-10 5.5E-15 79.3 4.9 39 170-211 2-40 (40)
117 2crn_A Ubash3A protein; compac 99.0 1.1E-10 3.7E-15 88.9 4.0 44 170-216 7-51 (64)
118 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 1.5E-10 5.2E-15 88.0 4.3 42 173-217 10-52 (64)
119 2dag_A Ubiquitin carboxyl-term 99.0 2.7E-10 9.1E-15 89.2 5.7 43 172-217 9-52 (74)
120 1wji_A Tudor domain containing 99.0 2E-10 6.8E-15 87.1 4.8 43 354-396 9-51 (63)
121 2cpw_A CBL-interacting protein 99.0 2E-10 6.8E-15 87.4 4.2 40 173-215 20-60 (64)
122 2ekk_A UBA domain from E3 ubiq 99.0 2.7E-10 9.3E-15 81.3 4.3 38 172-213 9-46 (47)
123 1wjn_A Tubulin-folding protein 99.0 1E-09 3.5E-14 89.5 8.3 72 2-76 11-93 (97)
124 1vg5_A RSGI RUH-014, rhomboid 99.0 4.9E-10 1.7E-14 87.3 4.8 48 348-395 23-70 (73)
125 2cpw_A CBL-interacting protein 98.9 7.8E-10 2.7E-14 84.1 5.5 42 356-397 21-63 (64)
126 2dkl_A Trinucleotide repeat co 98.9 9.5E-10 3.3E-14 88.2 6.2 44 354-397 21-64 (85)
127 1ify_A HHR23A, UV excision rep 98.9 8.7E-10 3E-14 79.5 5.3 42 352-393 6-47 (49)
128 1z96_A DNA-damage, UBA-domain 98.9 8.8E-10 3E-14 75.6 5.0 39 352-390 2-40 (40)
129 1wgn_A UBAP1, ubiquitin associ 98.9 8.7E-10 3E-14 82.0 5.1 48 347-394 12-59 (63)
130 2dai_A Ubadc1, ubiquitin assoc 98.9 1.2E-09 3.9E-14 87.3 5.5 43 172-217 29-71 (83)
131 1vek_A UBP14, ubiquitin-specif 98.9 9.9E-10 3.4E-14 87.9 4.9 43 172-217 29-72 (84)
132 2dag_A Ubiquitin carboxyl-term 98.9 1E-09 3.5E-14 85.8 4.8 44 354-397 9-53 (74)
133 2dai_A Ubadc1, ubiquitin assoc 98.9 9.6E-10 3.3E-14 87.8 4.6 44 354-397 29-72 (83)
134 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 1.3E-09 4.6E-14 82.8 5.2 42 356-397 11-53 (64)
135 2jy5_A Ubiquilin-1; UBA, alter 98.9 1.5E-09 5.2E-14 79.2 4.7 38 356-393 14-52 (52)
136 1wiv_A UBP14, ubiquitin-specif 98.9 1.7E-09 5.7E-14 84.4 4.8 46 351-396 26-71 (73)
137 1wgn_A UBAP1, ubiquitin associ 98.9 1.8E-09 6.1E-14 80.3 4.6 39 172-213 19-57 (63)
138 2knz_A Ubiquilin-4; cytoplasm, 98.9 3.4E-09 1.2E-13 77.6 5.8 43 351-393 6-51 (53)
139 2dak_A Ubiquitin carboxyl-term 98.8 8.8E-10 3E-14 83.5 2.4 43 354-396 9-51 (63)
140 2crn_A Ubash3A protein; compac 98.8 3E-09 1E-13 80.8 5.1 42 356-397 11-53 (64)
141 2lbc_A Ubiquitin carboxyl-term 98.8 3E-09 1E-13 91.2 5.8 41 172-215 78-118 (126)
142 2dah_A Ubiquilin-3; UBA domain 98.8 4.4E-09 1.5E-13 77.3 5.2 41 171-214 8-49 (54)
143 2cwb_A Chimera of immunoglobul 98.8 4.5E-09 1.5E-13 87.7 5.9 43 170-215 64-107 (108)
144 2ooa_A E3 ubiquitin-protein li 98.8 4.7E-09 1.6E-13 75.5 5.1 37 356-392 13-49 (52)
145 2ekk_A UBA domain from E3 ubiq 98.8 2.9E-09 9.8E-14 76.0 3.9 39 354-393 9-47 (47)
146 3kyd_D Small ubiquitin-related 98.8 2.8E-08 9.7E-13 83.9 9.7 73 1-76 41-113 (115)
147 2bwb_A Ubiquitin-like protein 98.8 1E-08 3.4E-13 72.9 5.7 37 356-392 9-46 (46)
148 2d9s_A CBL E3 ubiquitin protei 98.7 8.3E-09 2.9E-13 74.6 4.6 38 356-393 11-48 (53)
149 1vek_A UBP14, ubiquitin-specif 98.7 7.3E-09 2.5E-13 82.9 4.8 44 354-397 29-73 (84)
150 1veg_A NEDD8 ultimate buster-1 98.7 1.1E-08 3.7E-13 81.4 5.5 42 354-395 29-70 (83)
151 2dkl_A Trinucleotide repeat co 98.7 1E-08 3.4E-13 82.2 5.3 39 173-214 22-60 (85)
152 1vej_A Riken cDNA 4931431F19; 98.6 4.5E-08 1.5E-12 76.3 5.9 42 355-396 30-72 (74)
153 1dv0_A DNA repair protein HHR2 98.6 7.4E-09 2.5E-13 73.9 1.3 41 171-214 3-43 (47)
154 1wr1_B Ubiquitin-like protein 98.6 4.4E-08 1.5E-12 73.0 5.1 43 351-393 12-57 (58)
155 2dah_A Ubiquilin-3; UBA domain 98.6 4.9E-08 1.7E-12 71.7 5.3 41 355-395 10-51 (54)
156 2dna_A Unnamed protein product 98.6 9.5E-08 3.2E-12 73.0 6.3 49 348-396 11-62 (67)
157 3pge_A SUMO-modified prolifera 98.5 2.2E-07 7.6E-12 85.6 9.5 77 1-81 30-106 (200)
158 2ooa_A E3 ubiquitin-protein li 98.5 1.5E-07 5.1E-12 67.7 5.1 38 172-212 11-48 (52)
159 3tix_A Ubiquitin-like protein 98.5 1.7E-07 5.9E-12 85.4 6.8 75 1-79 58-132 (207)
160 2pjh_A Protein NPL4, nuclear p 98.5 9.5E-08 3.2E-12 75.6 4.2 69 1-73 5-78 (80)
161 2juj_A E3 ubiquitin-protein li 98.5 1.8E-07 6.1E-12 67.8 4.9 40 353-392 6-45 (56)
162 2d9s_A CBL E3 ubiquitin protei 98.4 2.6E-07 8.9E-12 66.8 5.1 38 172-212 9-46 (53)
163 4ae4_A Ubiquitin-associated pr 98.4 1.8E-07 6E-12 79.4 4.6 39 172-213 76-114 (118)
164 3k9o_A Ubiquitin-conjugating e 98.4 2.4E-07 8.1E-12 85.4 5.5 74 307-392 128-201 (201)
165 2oo9_A E3 ubiquitin-protein li 98.4 4.6E-07 1.6E-11 63.3 4.8 38 355-392 5-42 (46)
166 2oo9_A E3 ubiquitin-protein li 98.3 6.4E-07 2.2E-11 62.6 5.4 41 169-212 1-41 (46)
167 3goe_A DNA repair protein RAD6 98.3 4.5E-06 1.5E-10 65.3 9.3 70 2-74 11-81 (82)
168 2cwb_A Chimera of immunoglobul 98.3 8.4E-07 2.9E-11 73.9 5.3 40 355-394 67-107 (108)
169 2juj_A E3 ubiquitin-protein li 98.2 1.1E-06 3.8E-11 63.6 4.8 39 172-213 7-45 (56)
170 3k9o_A Ubiquitin-conjugating e 98.2 1E-06 3.4E-11 81.2 5.1 43 167-212 158-200 (201)
171 3v7o_A Minor nucleoprotein VP3 98.2 2E-07 6.9E-12 86.0 0.2 75 1-79 22-96 (227)
172 3e46_A Ubiquitin-conjugating e 98.2 1.5E-06 5.2E-11 82.9 5.9 75 306-392 179-253 (253)
173 1wj7_A Hypothetical protein (R 98.1 3.3E-06 1.1E-10 69.6 6.4 43 353-395 38-81 (104)
174 2jxx_A Nfatc2-interacting prot 98.1 9.2E-06 3.1E-10 66.5 8.9 69 2-73 27-96 (97)
175 2cp8_A NEXT to BRCA1 gene 1 pr 98.1 1.7E-06 5.7E-11 63.2 3.5 47 350-396 3-52 (54)
176 1wj7_A Hypothetical protein (R 98.1 4.9E-06 1.7E-10 68.6 6.0 44 170-216 37-81 (104)
177 1oqy_A HHR23A, UV excision rep 97.9 5.6E-06 1.9E-10 82.9 3.8 43 354-396 168-210 (368)
178 3uf8_A Ubiquitin-like protein 97.8 3.6E-05 1.2E-09 71.2 8.3 74 2-79 23-96 (209)
179 2l76_A Nfatc2-interacting prot 97.8 6.5E-05 2.2E-09 61.0 8.7 72 1-76 22-93 (95)
180 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 1.7E-05 5.8E-10 57.9 4.2 42 169-213 6-48 (54)
181 2qsf_X RAD23, UV excision repa 97.8 1.7E-05 5.9E-10 71.1 4.9 42 169-213 127-168 (171)
182 4efo_A Serine/threonine-protei 97.7 8.7E-05 3E-09 60.3 7.6 68 4-74 16-87 (94)
183 2bps_A YUKD protein; ubiquitin 97.7 6.5E-05 2.2E-09 59.4 6.2 71 2-72 6-80 (81)
184 3ix6_A TS, tsase, thymidylate 97.6 7.3E-06 2.5E-10 81.6 0.0 74 1-78 22-95 (360)
185 2kc2_A Talin-1, F1; FERM, adhe 97.6 9.3E-05 3.2E-09 63.4 6.6 69 2-73 13-120 (128)
186 2al3_A TUG long isoform; TUG U 97.5 0.00032 1.1E-08 56.4 8.0 74 1-77 10-83 (90)
187 4da1_A Protein phosphatase 1K, 97.4 2.4E-05 8.2E-10 78.5 0.0 75 2-80 32-106 (389)
188 3qx1_A FAS-associated factor 1 97.3 0.00072 2.5E-08 53.3 8.1 68 2-73 9-81 (84)
189 2dzk_A UBX domain-containing p 97.3 0.0019 6.5E-08 53.6 10.8 71 2-75 15-90 (109)
190 2cos_A Serine/threonine protei 97.3 0.00033 1.1E-08 50.7 4.8 38 172-212 9-47 (54)
191 3e46_A Ubiquitin-conjugating e 97.1 0.0004 1.4E-08 66.1 5.3 44 166-212 209-252 (253)
192 3ihp_A Ubiquitin carboxyl-term 97.1 0.00052 1.8E-08 75.6 6.4 40 356-395 722-761 (854)
193 2pwq_A Ubiquitin conjugating e 96.8 0.00022 7.6E-09 66.3 0.6 73 307-392 143-215 (216)
194 1wj4_A KIAA0794 protein; UBX d 96.7 0.0037 1.3E-07 53.1 7.2 69 2-74 45-118 (124)
195 2cr5_A Reproduction 8; UBX dom 96.3 0.023 7.9E-07 46.9 9.4 69 2-74 25-97 (109)
196 1s3s_G P47 protein; AAA ATPase 96.2 0.014 4.7E-07 49.7 7.9 66 2-69 54-122 (127)
197 1wgl_A TOLL-interacting protei 96.2 0.0061 2.1E-07 45.2 4.9 41 356-396 11-53 (59)
198 1tte_A Ubiquitin-conjugating e 95.7 0.0077 2.6E-07 55.8 4.2 76 307-384 123-199 (215)
199 2pwq_A Ubiquitin conjugating e 95.4 0.0025 8.5E-08 59.2 0.0 41 171-214 176-216 (216)
200 2dam_A ETEA protein; KIAA0887, 95.3 0.039 1.3E-06 41.8 6.2 47 347-393 11-59 (67)
201 1wgl_A TOLL-interacting protei 95.2 0.017 5.9E-07 42.7 3.9 39 172-213 9-49 (59)
202 2cos_A Serine/threonine protei 95.2 0.015 5.1E-07 42.1 3.3 42 353-394 8-50 (54)
203 2dal_A Protein KIAA0794; FAS a 95.0 0.051 1.8E-06 40.4 6.0 47 347-393 8-55 (62)
204 2daj_A KIAA0977 protein, COBL- 95.0 0.1 3.5E-06 41.3 7.9 70 2-77 12-84 (91)
205 1v92_A NSFL1 cofactor P47; 3-h 94.5 0.058 2E-06 37.2 5.0 40 354-393 5-45 (46)
206 2l32_A Small archaeal modifier 94.5 0.11 3.8E-06 39.9 6.9 60 1-73 1-60 (74)
207 2dhy_A CUE domain-containing p 94.4 0.074 2.5E-06 40.3 5.7 45 168-213 14-58 (67)
208 2di0_A Activating signal coint 94.4 0.12 4E-06 39.7 6.7 50 167-219 8-60 (71)
209 1otr_A Protein CUE2; protein-p 94.4 0.057 1.9E-06 38.5 4.6 39 172-213 4-44 (49)
210 2dhy_A CUE domain-containing p 93.8 0.085 2.9E-06 40.0 4.9 39 354-392 18-58 (67)
211 4e71_A Plexin-B2, MM1; transme 93.7 0.32 1.1E-05 40.4 8.7 64 10-74 23-109 (111)
212 3ihp_A Ubiquitin carboxyl-term 93.6 0.05 1.7E-06 59.9 4.9 41 170-213 718-758 (854)
213 1pve_A HHR23B, UV excision rep 93.6 0.041 1.4E-06 42.3 2.9 41 277-317 19-61 (72)
214 4a3p_A Ubiquitin carboxyl-term 93.5 0.29 1E-05 45.0 9.2 61 13-76 142-209 (217)
215 1ryj_A Unknown; beta/alpha pro 93.4 0.44 1.5E-05 35.8 8.4 61 1-74 5-65 (70)
216 3jyu_A Ubiquitin carboxyl-term 93.1 0.47 1.6E-05 44.0 10.0 61 13-76 154-221 (231)
217 2f4m_B UV excision repair prot 92.6 0.065 2.2E-06 39.9 2.5 38 279-316 19-58 (61)
218 2r2o_A Plexin-B1; effector dom 92.4 0.4 1.4E-05 41.3 7.7 65 11-76 41-129 (138)
219 4fp9_B Mterf domain-containing 92.2 0.5 1.7E-05 46.4 9.3 49 345-393 138-195 (335)
220 1vjk_A Molybdopterin convertin 92.1 0.83 2.8E-05 36.4 8.9 68 1-73 10-92 (98)
221 2cp9_A EF-TS, EF-TSMT, elongat 92.0 0.21 7.2E-06 37.5 4.8 37 356-392 11-48 (64)
222 2cp9_A EF-TS, EF-TSMT, elongat 92.0 0.24 8.2E-06 37.2 5.0 35 174-211 11-46 (64)
223 1otr_A Protein CUE2; protein-p 91.6 0.25 8.4E-06 35.1 4.5 39 355-393 5-45 (49)
224 3rpf_C Molybdopterin convertin 90.7 0.67 2.3E-05 35.0 6.6 65 1-73 1-68 (74)
225 3ivf_A Talin-1; FERM domain, c 90.3 0.62 2.1E-05 45.8 7.8 72 2-74 5-83 (371)
226 2llw_A Heat shock protein STI1 90.1 0.42 1.4E-05 36.5 5.0 38 277-315 22-59 (71)
227 3h6n_A Plexin-D1; structural g 89.0 1.8 6.1E-05 36.7 8.5 65 10-75 16-104 (127)
228 1ufz_A Hypothetical protein BA 87.9 0.95 3.3E-05 35.5 5.6 46 347-392 23-75 (83)
229 4e74_A Plexin-A4; RBD, structu 87.7 1.4 4.7E-05 36.9 6.8 63 12-75 28-114 (117)
230 2dzl_A Protein FAM100B; UBA-li 87.5 1 3.5E-05 33.7 5.5 42 353-394 16-58 (66)
231 2lnm_A Protein TIC 40, chlorop 86.8 0.75 2.6E-05 33.9 4.3 38 277-315 14-51 (62)
232 3po0_A Small archaeal modifier 86.4 5.9 0.0002 30.5 9.7 58 11-73 18-83 (89)
233 1oey_A P67-PHOX, neutrophil cy 85.9 1.2 4.2E-05 34.9 5.3 45 3-50 6-50 (83)
234 4dbg_B Ring finger protein 31; 85.6 0.6 2E-05 41.0 3.7 38 172-211 102-139 (162)
235 1p3q_Q VPS9P, vacuolar protein 85.6 0.35 1.2E-05 35.1 1.8 39 353-391 11-51 (54)
236 1q02_A Sequestosome 1; helical 85.2 0.85 2.9E-05 32.6 3.6 39 352-390 8-48 (52)
237 2di0_A Activating signal coint 85.2 1.6 5.4E-05 33.3 5.4 44 350-393 8-54 (71)
238 2qho_B E3 ubiquitin-protein li 84.9 1.7 5.9E-05 30.6 5.0 39 352-392 9-49 (53)
239 2juo_A GA-binding protein alph 84.7 2.4 8.1E-05 33.4 6.3 59 15-76 7-65 (89)
240 1ip9_A BEM1 protein; ubiquitin 84.7 1.3 4.4E-05 34.9 4.9 41 3-48 13-54 (85)
241 1ef1_A Moesin; membrane, FERM 84.5 3.5 0.00012 38.7 9.0 74 1-78 2-81 (294)
242 4dbg_B Ring finger protein 31; 83.8 1.2 4E-05 39.2 4.7 38 353-390 101-139 (162)
243 3m66_A Mterf3, mterf domain-co 83.7 3.8 0.00013 38.2 8.7 40 173-215 6-54 (270)
244 1wgk_A Riken cDNA 2900073H19 p 83.5 1.3 4.3E-05 36.8 4.6 70 1-75 12-104 (114)
245 1h4r_A Merlin; FERM, neurofibr 83.5 4.1 0.00014 38.8 9.0 73 1-77 23-100 (314)
246 1tyg_B YJBS; alpha beta barrel 82.6 1.7 5.9E-05 34.3 4.9 57 8-74 25-82 (87)
247 3e21_A HFAF1, FAS-associated f 82.5 1.1 3.7E-05 31.2 3.2 36 355-390 6-43 (45)
248 3onh_A Ubiquitin-activating en 80.9 4 0.00014 34.5 6.8 51 20-74 19-78 (127)
249 3dwg_C 9.5 kDa culture filtrat 80.7 5.4 0.00018 31.0 7.2 72 1-74 1-88 (93)
250 1ixs_A Holliday junction DNA h 79.9 1.3 4.6E-05 32.7 3.2 29 169-200 14-42 (62)
251 2kmm_A Guanosine-3',5'-BIS(dip 79.6 3.6 0.00012 30.3 5.6 62 1-74 1-62 (73)
252 1q02_A Sequestosome 1; helical 79.0 2 6.7E-05 30.7 3.6 38 170-210 8-47 (52)
253 3mva_O Transcription terminati 79.0 2.7 9.2E-05 40.8 6.0 39 171-212 18-60 (343)
254 2k5p_A THis protein, thiamine- 78.7 2.7 9.4E-05 32.3 4.7 61 1-74 1-64 (78)
255 2kl0_A Putative thiamin biosyn 78.1 3.1 0.00011 31.5 4.9 60 1-74 1-60 (73)
256 1f0z_A THis protein; ubiquitin 77.8 3.1 0.00011 30.5 4.7 61 1-74 1-61 (66)
257 2k9x_A Tburm1, uncharacterized 77.3 0.74 2.5E-05 38.0 1.2 69 1-74 5-97 (110)
258 2i1j_A Moesin; FERM, coiled-co 77.2 6 0.0002 41.5 8.4 75 1-78 5-84 (575)
259 1tte_A Ubiquitin-conjugating e 77.1 1.5 5.2E-05 40.3 3.3 23 173-198 170-192 (215)
260 2qjl_A URM1, ubiquitin-related 76.5 3.7 0.00013 32.6 5.1 35 1-35 2-46 (99)
261 3kuz_A Plexin-C1; structural g 76.1 4 0.00014 34.4 5.4 60 11-73 39-124 (126)
262 3hm6_X Plexin-B1; structural g 75.9 7.2 0.00025 41.2 8.3 63 12-75 275-361 (644)
263 3ivf_A Talin-1; FERM domain, c 74.7 9.7 0.00033 37.1 8.7 71 2-74 87-166 (371)
264 1vd2_A Protein kinase C, IOTA 73.8 11 0.00036 29.9 7.0 45 3-50 7-53 (89)
265 2l52_A Methanosarcina acetivor 73.2 14 0.00047 29.3 7.7 69 1-73 4-93 (99)
266 1wgr_A Growth factor receptor- 73.1 10 0.00035 30.6 7.0 71 3-75 12-92 (100)
267 3ig3_A Plxna3 protein; plexin 72.8 12 0.00041 39.5 9.1 65 11-76 247-335 (627)
268 3qij_A Protein 4.1; cytoskelet 71.5 11 0.00039 35.6 8.1 71 1-73 18-93 (296)
269 1fm0_D Molybdopterin convertin 70.4 17 0.00059 27.0 7.5 56 12-73 18-75 (81)
270 1y8x_B Ubiquitin-activating en 70.4 3.5 0.00012 33.3 3.5 59 12-73 6-82 (98)
271 2q5w_D Molybdopterin convertin 70.1 7.1 0.00024 29.0 5.1 54 11-73 16-71 (77)
272 2cu3_A Unknown function protei 68.9 6.9 0.00024 28.4 4.7 56 8-74 4-59 (64)
273 4eut_A Serine/threonine-protei 68.0 18 0.00063 34.8 9.0 60 11-73 322-384 (396)
274 1tr8_A Conserved protein (MTH1 65.0 9.1 0.00031 31.1 5.0 39 349-389 63-101 (102)
275 1ufz_A Hypothetical protein BA 65.0 13 0.00044 29.1 5.6 42 172-213 34-75 (83)
276 2llv_A Heat shock protein STI1 62.9 3.8 0.00013 30.9 2.2 36 279-315 27-63 (71)
277 2kvr_A Ubiquitin carboxyl-term 61.1 6.3 0.00022 33.2 3.5 31 14-47 59-89 (130)
278 1vdl_A Ubiquitin carboxyl-term 60.3 14 0.00046 28.4 4.8 37 357-393 27-65 (80)
279 1p3q_Q VPS9P, vacuolar protein 58.1 4.3 0.00015 29.3 1.6 42 170-212 10-51 (54)
280 1tr8_A Conserved protein (MTH1 58.0 11 0.00036 30.7 4.2 36 173-211 66-102 (102)
281 1ixs_A Holliday junction DNA h 57.3 13 0.00044 27.3 4.2 26 353-378 16-41 (62)
282 1aip_C EF-TS, elongation facto 57.1 12 0.00041 33.9 4.8 36 174-212 5-41 (196)
283 2lva_A Ubiquitin carboxyl-term 61.6 2.3 7.8E-05 35.8 0.0 36 357-392 21-58 (129)
284 2g1e_A Hypothetical protein TA 56.1 34 0.0012 25.8 6.8 59 14-73 18-84 (90)
285 3qa8_A MGC80376 protein; kinas 55.8 12 0.0004 40.1 5.3 50 10-62 321-371 (676)
286 1wgy_A RAP guanine nucleotide 54.9 45 0.0016 27.0 7.5 68 5-75 14-86 (104)
287 1xb2_B EF-TS, elongation facto 54.2 13 0.00044 35.7 4.8 36 174-212 6-42 (291)
288 2l9b_A MRNA 3'-END-processing 53.8 17 0.00058 29.9 4.7 29 286-314 58-86 (109)
289 2lnm_A Protein TIC 40, chlorop 53.8 10 0.00036 27.6 3.2 38 277-319 5-45 (62)
290 1q1o_A Cell division control p 53.5 25 0.00086 28.3 5.7 26 10-35 22-47 (98)
291 2kmc_A Fermitin family homolog 52.0 84 0.0029 25.3 8.4 73 2-75 21-99 (102)
292 2ns5_A Partitioning-defective 49.7 91 0.0031 24.3 8.6 72 1-74 3-81 (85)
293 1rws_A Hypothetical protein PF 48.7 6.2 0.00021 29.8 1.3 48 14-73 24-71 (77)
294 1v92_A NSFL1 cofactor P47; 3-h 46.0 42 0.0014 22.3 5.1 37 172-211 5-42 (46)
295 2ylm_A Ubiquitin carboxyl-term 45.9 55 0.0019 33.7 8.4 58 12-72 353-418 (530)
296 3ge3_C Toluene-4-monooxygenase 44.8 49 0.0017 25.8 5.8 61 13-74 17-82 (84)
297 2c7h_A RBBP6, retinoblastoma-b 44.2 55 0.0019 25.7 6.1 34 2-35 8-43 (86)
298 4gdk_A Ubiquitin-like protein 43.3 76 0.0026 24.9 7.0 60 14-76 23-86 (91)
299 3hvz_A Uncharacterized protein 42.4 58 0.002 24.7 6.0 62 2-75 7-68 (78)
300 3q8g_A CRAL-TRIO domain-contai 41.9 39 0.0013 32.3 6.1 45 346-390 31-83 (320)
301 4g3o_A E3 ubiquitin-protein li 39.6 59 0.002 23.6 5.2 46 166-213 11-56 (58)
302 2llw_A Heat shock protein STI1 39.5 49 0.0017 24.8 5.1 38 277-319 13-53 (71)
303 2hj1_A Hypothetical protein; s 38.5 36 0.0012 27.1 4.4 59 11-74 26-84 (97)
304 3u52_E Phenol hydroxylase comp 37.7 1.1E+02 0.0037 25.4 7.2 61 13-73 40-107 (119)
305 2inc_C TOUB protein; DIIRON, 4 37.3 1.4E+02 0.005 23.1 8.5 62 13-75 15-82 (83)
306 2eel_A Cell death activator CI 36.8 1E+02 0.0036 24.3 6.8 50 21-76 28-79 (91)
307 3e7l_A Transcriptional regulat 36.7 18 0.0006 26.0 2.1 24 366-389 19-42 (63)
308 3au4_A Myosin-X; protein-prote 36.4 50 0.0017 33.9 6.3 58 1-61 217-280 (555)
309 3rui_B Autophagy-related prote 36.3 1.2E+02 0.0042 24.8 7.5 59 15-76 51-113 (118)
310 1ltl_A DNA replication initiat 35.5 28 0.00094 32.7 3.8 51 277-327 19-75 (279)
311 1umq_A Photosynthetic apparatu 34.4 20 0.00067 27.7 2.1 23 367-389 42-64 (81)
312 2dhz_A RAP guanine nucleotide 34.1 93 0.0032 25.8 6.4 63 7-74 16-91 (120)
313 3k6g_A Telomeric repeat-bindin 33.7 62 0.0021 26.3 5.0 42 351-392 7-52 (111)
314 2dal_A Protein KIAA0794; FAS a 33.3 56 0.0019 23.6 4.4 40 170-212 13-53 (62)
315 3h9d_A ATG8, microtubule-assoc 33.1 1.3E+02 0.0044 24.8 7.1 59 15-76 52-114 (119)
316 3w1s_C Ubiquitin-like protein 33.0 1.6E+02 0.0054 23.1 7.3 57 14-75 26-85 (91)
317 2kna_A Baculoviral IAP repeat- 32.6 31 0.0011 27.8 3.1 22 175-199 30-51 (104)
318 2ztd_A Holliday junction ATP-d 32.3 29 0.001 31.6 3.3 26 172-200 164-189 (212)
319 3cz6_A DNA-binding protein RAP 32.2 41 0.0014 29.5 4.0 46 169-217 60-112 (168)
320 1eo6_A GATE-16, golgi-associat 32.2 1.2E+02 0.0041 24.7 6.8 59 15-76 49-111 (117)
321 3m95_A Autophagy related prote 31.8 1.1E+02 0.0038 25.4 6.6 59 15-76 57-119 (125)
322 2zjd_A Microtubule-associated 31.0 99 0.0034 25.9 6.2 58 15-75 57-119 (130)
323 3pvl_A Myosin VIIA isoform 1; 30.9 89 0.003 33.1 7.2 46 1-48 264-309 (655)
324 3e7l_A Transcriptional regulat 30.3 55 0.0019 23.3 3.9 41 165-215 5-45 (63)
325 3hk0_A Growth factor receptor- 29.5 89 0.003 29.1 6.2 57 3-62 11-74 (256)
326 2r2q_A Gamma-aminobutyric acid 28.9 1.4E+02 0.0049 23.9 6.7 58 15-75 48-109 (110)
327 1v8c_A MOAD related protein; r 28.9 1.4E+02 0.0049 25.8 7.1 56 14-73 17-81 (168)
328 2nvu_B Maltose binding protein 28.7 76 0.0026 34.0 6.3 60 13-73 714-789 (805)
329 1b4u_A LIGA, LIGB, protocatech 28.3 1.2E+02 0.0041 25.8 6.2 45 299-368 40-89 (139)
330 3eye_A PTS system N-acetylgala 28.1 57 0.002 28.6 4.3 52 314-366 87-143 (168)
331 2ylm_A Ubiquitin carboxyl-term 27.8 45 0.0015 34.4 4.2 70 3-75 133-217 (530)
332 4gmv_A RAS-associated and plec 27.6 1.7E+02 0.0058 27.6 7.9 68 3-73 34-112 (281)
333 1aua_A Phosphatidylinositol tr 27.6 70 0.0024 29.6 5.2 44 347-390 23-74 (296)
334 1f2r_I Inhibitor of caspase-ac 27.6 82 0.0028 25.4 4.8 49 21-75 37-89 (100)
335 1cuk_A RUVA protein; DNA repai 26.4 36 0.0012 30.7 2.8 25 172-199 160-184 (203)
336 1vsq_C Mannose-specific phosph 26.1 73 0.0025 27.7 4.7 52 314-366 85-141 (165)
337 2zc2_A DNAD-like replication p 26.0 71 0.0024 23.7 4.0 30 349-378 17-47 (78)
338 3lxf_A Ferredoxin; iron, iron- 24.9 71 0.0024 25.2 4.0 27 2-28 2-28 (104)
339 2dam_A ETEA protein; KIAA0887, 24.6 1.7E+02 0.0057 21.5 5.7 43 170-213 16-58 (67)
340 4a6q_A Histone deacetylase com 24.5 2.2E+02 0.0076 24.3 7.2 63 13-77 56-140 (143)
341 3r8s_T 50S ribosomal protein L 24.4 1.4E+02 0.0047 23.5 5.6 41 10-53 27-68 (93)
342 1zoq_C CREB-binding protein, i 24.0 72 0.0025 22.0 3.2 15 286-300 19-33 (47)
343 1oai_A Nuclear RNA export fact 23.9 1.6E+02 0.0056 21.0 5.4 40 349-388 2-42 (59)
344 2v1y_A Phosphatidylinositol-4, 23.7 95 0.0033 25.3 4.6 69 4-75 23-104 (108)
345 2h5n_A Hypothetical protein PG 23.5 1.5E+02 0.005 24.4 5.9 39 349-387 34-74 (133)
346 1n62_A Carbon monoxide dehydro 23.3 58 0.002 28.4 3.4 27 2-29 5-31 (166)
347 3kxe_C Antitoxin protein PARD- 23.1 85 0.0029 24.5 4.0 40 347-386 7-48 (88)
348 3m66_A Mterf3, mterf domain-co 23.0 1.3E+02 0.0045 27.4 6.1 25 171-198 40-64 (270)
349 3hrd_D Nicotinate dehydrogenas 23.0 57 0.002 28.3 3.3 27 1-28 4-30 (160)
350 1ntc_A Protein (nitrogen regul 22.7 25 0.00086 27.1 0.9 24 366-389 51-74 (91)
351 1nrz_A PTS system, sorbose-spe 22.2 95 0.0033 26.9 4.6 52 314-366 82-138 (164)
352 3p3v_A PTS system, N-acetylgal 22.0 1E+02 0.0035 26.7 4.8 52 314-366 84-141 (163)
353 1t3q_A Quinoline 2-oxidoreduct 21.9 62 0.0021 28.0 3.4 28 1-29 10-37 (168)
354 1pgy_A SWA2P; UBA, ubiquitin, 21.6 1.8E+02 0.006 20.0 4.8 32 352-383 4-36 (47)
355 2ekf_A Ancient ubiquitous prot 20.4 2.5E+02 0.0085 20.5 5.8 42 170-213 11-52 (61)
356 2ba3_A NIKA; dimer, bacterial 20.4 91 0.0031 21.1 3.4 28 347-374 19-47 (51)
357 1ffv_A CUTS, iron-sulfur prote 20.0 74 0.0025 27.6 3.4 27 2-29 5-31 (163)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=4.2e-74 Score=576.93 Aligned_cols=350 Identities=35% Similarity=0.614 Sum_probs=241.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||++|+.++++..+++++|||||+||+|+|+++|++|||+++++|++|++|.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999432111999999999999999999999999999999997777766544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 015941 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (398)
Q Consensus 81 ~~~~~~~~~~~~~a~~~~~sa~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
+....+++..+.+++++ .++++ +...+.++++..+.+....+. ..+.+..+|..+..+.+..+....++
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~ 156 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPES---STSFP---PAPTSGMSHPPPAAREDKSPS-----EESAPTTSPESVSGSVPSSGSSGREE 156 (368)
T ss_dssp SCCCCCSSCCCCCSSSC---CCSCC---CSSSCCCCCCCSSSSCCCCCS-----CSCCCCSSTTCSCCCSCSCCCSCCCC
T ss_pred CCCCCCcccCCCCCccc---cCCCC---CCCCCCCCCCCccccccCCcc-----ccCCCCCCCCcccccccccccccccc
Confidence 32111111111110100 00000 000000000000000000000 00000001111111111111123345
Q ss_pred cccccccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCccc
Q 015941 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (398)
Q Consensus 161 ~~~s~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
.+.|+||+|++++.+|++||+|| |+|++|++|||++|||||||||||++|||++.+...+ ...+ .
T Consensus 157 ~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~--------~~~~--~-- 221 (368)
T 1oqy_A 157 DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG--------SVQE--S-- 221 (368)
T ss_dssp CCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC--------CCCC--C--
T ss_pred cccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC--------Cccc--c--
Confidence 67899999999999999999999 9999999999999999999999999999987442210 0000 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhccHHHHHHHHHHHhChHHH----HHHhhhCHHHHHHHHH
Q 015941 241 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQE 316 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~nlf~~~~~~~~~~~~~~~l~~Lr~~P~f~~lrq~vq~nP~lL----qqi~~~nP~L~q~I~~ 316 (398)
+..+. .+.++++.++|+|||++|||++||++||+||++| |+|+++||+|+++|++
T Consensus 222 -----~~~~~----------------~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~ 280 (368)
T 1oqy_A 222 -----QVSEQ----------------PATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISR 280 (368)
T ss_dssp -----CSSCC----------------CCSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHH
T ss_pred -----ccccc----------------cCccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 00000 0112234578999999999999999999999998 9999999999999999
Q ss_pred CHHHHHHHhcCCCCCC-CCC----cccccc--ccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHH
Q 015941 317 HQTDFLRLINEPVEGG-EGN----VLGQLA--SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389 (398)
Q Consensus 317 n~e~Fl~~l~~~~~~~-~~~----~~~~~~--~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L 389 (398)
||++||+||+++.++. .+. +.+... ......|+||+||+++|+||++|||++.+||+||++|+||+++|+|||
T Consensus 281 n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L 360 (368)
T 1oqy_A 281 HQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 360 (368)
T ss_dssp HHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHH
T ss_pred CHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999886421 010 001110 112357899999999999999999999999999999999999999999
Q ss_pred hccCCCCC
Q 015941 390 LDHMHEFE 397 (398)
Q Consensus 390 ~~~~~d~~ 397 (398)
|++++|+|
T Consensus 361 ~~~~~d~~ 368 (368)
T 1oqy_A 361 LSQNFDDE 368 (368)
T ss_dssp HHHHCCCC
T ss_pred hhCcCcCC
Confidence 99988764
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=4e-36 Score=270.15 Aligned_cols=123 Identities=33% Similarity=0.547 Sum_probs=95.2
Q ss_pred CCCchHHhh-ccHHHHHHHHHHHhChHHH----HHHhhhCHHHHHHHHHCHHHHHHHhcCCCCCC------------CCC
Q 015941 273 GAGTLDFLR-NSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 335 (398)
Q Consensus 273 ~~~~l~~Lr-~~P~f~~lrq~vq~nP~lL----qqi~~~nP~L~q~I~~n~e~Fl~~l~~~~~~~------------~~~ 335 (398)
++++|++|| ++|+|++||++|++||++| |+|+++||+|+++|++||++||+||+++..+. ++.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 466799999 9999999999999999988 99999999999999999999999999875431 010
Q ss_pred ------cccccc-----ccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 336 ------VLGQLA-----SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 336 ------~~~~~~-----~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
..+... ...+..|++|+||+++|+||++|||+|+.||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 000000 111247899999999999999999999999999999999999999999999765
No 3
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-19 Score=151.67 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 4
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.77 E-value=8.5e-19 Score=141.34 Aligned_cols=80 Identities=34% Similarity=0.492 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+|++|++|+|+++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999988765
Q ss_pred CCC
Q 015941 81 SSG 83 (398)
Q Consensus 81 ~~~ 83 (398)
...
T Consensus 78 ~~~ 80 (88)
T 4fbj_B 78 GLR 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=137.14 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998753
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.3e-18 Score=140.76 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~---~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 015941 78 KVSS 81 (398)
Q Consensus 78 ~~~~ 81 (398)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 7
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=1e-18 Score=140.74 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|+| +|++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 8
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=3.8e-18 Score=135.58 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~---~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+||+++|+++.++|++++||.+||++|+.+ .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999876
Q ss_pred CC
Q 015941 78 KV 79 (398)
Q Consensus 78 ~~ 79 (398)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 9
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=3.1e-18 Score=138.60 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+.+|++|||++|++|+|++|.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999864
No 10
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=5.6e-18 Score=137.88 Aligned_cols=78 Identities=36% Similarity=0.584 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||++|+..+| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 015941 81 S 81 (398)
Q Consensus 81 ~ 81 (398)
.
T Consensus 79 ~ 79 (96)
T 3k9o_B 79 D 79 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 11
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=2.4e-18 Score=142.16 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~i--eV~~~~TV~dLK~~I-~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gI-k~~s~I~v~v~k 76 (398)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 015941 77 S 77 (398)
Q Consensus 77 ~ 77 (398)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=3.1e-18 Score=137.26 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~-L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999975
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.74 E-value=4.7e-18 Score=138.52 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|+|+-
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999863
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.5e-18 Score=139.02 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~dLK~~I-~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gI-k~~s~I~v~v~k 76 (398)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+|+++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999874
No 15
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.3e-17 Score=138.94 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|+ |.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|+|+++++|||+++++..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999999876543
No 16
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.8e-18 Score=138.00 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.+ +|+++|||+|+||.|+|+++|++|+|++|++|+|+++.++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.73 E-value=1.5e-17 Score=128.64 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||.+|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998754
No 18
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.73 E-value=6.8e-18 Score=134.77 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|++|.|+|++++||.+||.+|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 19
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.73 E-value=1.3e-18 Score=134.78 Aligned_cols=58 Identities=45% Similarity=0.901 Sum_probs=54.4
Q ss_pred CCchHHhhccHHHHHHHHHHHhChHHH----HHHhhhCHHHHHHHHHCHHHHHHHhcCCCCC
Q 015941 274 AGTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPVEG 331 (398)
Q Consensus 274 ~~~l~~Lr~~P~f~~lrq~vq~nP~lL----qqi~~~nP~L~q~I~~n~e~Fl~~l~~~~~~ 331 (398)
.+++++||++|+|++||++||+||++| ++|+++||+|+++|++||++|++||+++.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 356899999999999999999999999 9999999999999999999999999998653
No 20
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.3e-17 Score=130.44 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~-~ie-V~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+||+++|+++ .++ |++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 21
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.72 E-value=2.7e-17 Score=127.14 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998754
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.4e-17 Score=131.98 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||++|+++.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999998764
No 23
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3e-17 Score=131.70 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.8
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g-~~~~i-eV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++| +++.| +|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998776
Q ss_pred CC
Q 015941 79 VS 80 (398)
Q Consensus 79 ~~ 80 (398)
..
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 24
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.72 E-value=8.4e-18 Score=126.56 Aligned_cols=55 Identities=47% Similarity=0.962 Sum_probs=52.2
Q ss_pred CchHHhhccHHHHHHHHHHHhChHHH----HHHhhhCHHHHHHHHHCHHHHHHHhcCCC
Q 015941 275 GTLDFLRNSQQFQALRTMVQANPQIL----QELGKQNPHLMRLIQEHQTDFLRLINEPV 329 (398)
Q Consensus 275 ~~l~~Lr~~P~f~~lrq~vq~nP~lL----qqi~~~nP~L~q~I~~n~e~Fl~~l~~~~ 329 (398)
+++++||++|+|++||++|++||++| ++|+++||+|+++|++||++|++||+++.
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999 99999999999999999999999998864
No 25
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.3e-17 Score=139.12 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||.+|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||++++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999876543
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=129.66 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 27
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=8.2e-18 Score=139.24 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||||.||+|+|+.+|++|||+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999874
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.4e-17 Score=130.43 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.|+|++++||.+||++|+.+.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987764
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=1.5e-17 Score=130.61 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=132.53 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=133.87 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||.+|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 32
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.8e-17 Score=133.51 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~dLK~~I~~~~--g~~~ip~~~QkLIf~GK~L~D~~tL~d~--gIk~~s~I~v~v 74 (398)
|+|+||+++++ .+.|+|++++||.+||++|+.+. + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999998 67788889999999999999998 8 999999999999999999999999 999999999999
Q ss_pred ecCCCC
Q 015941 75 TKSKVS 80 (398)
Q Consensus 75 ~k~~~~ 80 (398)
+.+...
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876643
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.4e-17 Score=130.74 Aligned_cols=76 Identities=29% Similarity=0.446 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987654
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.2e-17 Score=132.08 Aligned_cols=76 Identities=33% Similarity=0.582 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.++.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 35
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.3e-17 Score=139.39 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCccccccc
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~---------------~~QkLIf~GK~L~-D~~tL~d~gI 64 (398)
|+|+||+++|++|.|+|++++||.+||++|+.+.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCcEEEEEEecCCCC
Q 015941 65 AENSFVVVMLTKSKVS 80 (398)
Q Consensus 65 k~~s~I~v~v~k~~~~ 80 (398)
++|++|||+++.+...
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999987654
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=4.6e-17 Score=133.10 Aligned_cols=76 Identities=30% Similarity=0.370 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~-~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++| ++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+ ++|++|||+++++|+|+++.++.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999988 899999999999999999999999 999999999999999999 99999999999999999987764
Q ss_pred C
Q 015941 80 S 80 (398)
Q Consensus 80 ~ 80 (398)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.6e-17 Score=132.68 Aligned_cols=74 Identities=27% Similarity=0.300 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~-~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+.|.|+|++++||.+||++|+.+ . +++|||||+||.|+|+ ++|++|||++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999876 3 7899999999999999 99999999999999999987654
Q ss_pred C
Q 015941 80 S 80 (398)
Q Consensus 80 ~ 80 (398)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.70 E-value=3.1e-17 Score=134.63 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.|+|.+++||.+||.+|+.+.| +|+++|||||+|+.|+|+++|++|+|+++++|+|+++.++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 39
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=6e-17 Score=134.11 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=70.7
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g----~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~-~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+||++++ ++|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+ ++|++|+|+++++|+|+++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999988 6999999999999999987
Q ss_pred cCCCC
Q 015941 76 KSKVS 80 (398)
Q Consensus 76 k~~~~ 80 (398)
.+..+
T Consensus 85 ~~gg~ 89 (102)
T 1v5o_A 85 DNVGL 89 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=7.5e-17 Score=135.67 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|++|.|+|++++||.+||.+|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998764
No 41
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.69 E-value=1.2e-16 Score=130.93 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||.+|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.1e-16 Score=124.54 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+||+ +|+.+.++|++++||.+||.+|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 43
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=8.8e-17 Score=133.06 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=65.5
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 2 kI~VKtl~----g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
.|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|++|++|+|| +++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl-~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL-ELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE-CCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE-EEC
Confidence 36677666 77899999999999999999999999 99999999999999999999999999999999555 444
Q ss_pred C
Q 015941 78 K 78 (398)
Q Consensus 78 ~ 78 (398)
.
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=4.8e-17 Score=132.68 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+. |++|.|+|++++||.+||++|+...+ +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 45
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=2.9e-18 Score=133.43 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||.+|+...| +|+++|+|+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.3e-16 Score=137.24 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||++ |++|.|+|++++||.+||++|+.+.| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999999 99999999999999999999999999 999999999999999999999999999999999999876543
No 47
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=131.76 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+. |+++.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999997654
No 48
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=132.23 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+ +.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999987653
No 49
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.66 E-value=5.3e-17 Score=117.49 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.2
Q ss_pred cccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCC
Q 015941 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (398)
Q Consensus 165 ~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~ 216 (398)
+|++|+.+++.|++||+|| |+|++|++|||+++||++||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999985
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.9e-16 Score=133.43 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCcccccccCCCc--EEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~---~i--p~~~QkLIf~GK~L~D~~tL~d~gIk~~s--~I~v~ 73 (398)
|+|+||+++|++++|+|++++||.+||++|+...+.+ .+ ++++|||||.||+|+|+.+|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999943211 13 69999999999999999999999998775 56666
Q ss_pred EecC
Q 015941 74 LTKS 77 (398)
Q Consensus 74 v~k~ 77 (398)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 6543
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=129.26 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+ |+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 8999998 89999999999999999999999999 9999999999999999999999999999999999998764
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.66 E-value=3.5e-16 Score=141.09 Aligned_cols=78 Identities=35% Similarity=0.544 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|++|++|||+++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987654
Q ss_pred C
Q 015941 81 S 81 (398)
Q Consensus 81 ~ 81 (398)
.
T Consensus 78 k 78 (169)
T 3l0w_B 78 G 78 (169)
T ss_dssp -
T ss_pred c
Confidence 3
No 53
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.7e-16 Score=129.05 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.3
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+|| +.|++| .|+|++++||.+||.+|++++| +|+++|||+|+||.|+|+ +|++|||+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 789999 478999 6999999999999999999999 999999999999999999 99999999999999997643
No 54
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.65 E-value=2.4e-17 Score=118.24 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015941 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397 (398)
Q Consensus 351 t~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~~ 397 (398)
|+||.++|+||++|||+|.+||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987753
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=129.73 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 56
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.7e-16 Score=129.87 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCcccccccC
Q 015941 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (398)
Q Consensus 1 MkI~VKtl~g---~~~~ieV~--------~-~~TV~dLK~~I~~~~--g~~~ip~~~-QkLIf~GK~L~D~~tL~d~gIk 65 (398)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+.+. | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCcEEEEEEecC
Q 015941 66 ENSFVVVMLTKS 77 (398)
Q Consensus 66 ~~s~I~v~v~k~ 77 (398)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 57
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.63 E-value=3.8e-16 Score=132.56 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCC-------CcEEEE
Q 015941 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~-------~s~I~v 72 (398)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78899888877 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 015941 73 MLTK 76 (398)
Q Consensus 73 ~v~k 76 (398)
++|+
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 58
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=5.7e-16 Score=133.15 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=67.8
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCC--CCCCC--CCeEEEeCCeecCCCCcccccccCCC------cE
Q 015941 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (398)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~dLK~~I~~~~g~--~~ip~--~~QkLIf~GK~L~D~~tL~d~gIk~~------s~ 69 (398)
|+|+||+++|+.| .++|++++||.+||++|+...+. ..+|+ ++|||||+||+|+|+++|++|+|+++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 69999999999999999665421 12776 79999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 015941 70 VVVMLTKSKV 79 (398)
Q Consensus 70 I~v~v~k~~~ 79 (398)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888887653
No 59
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=6.4e-16 Score=136.84 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|+|++|++|||+++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999998764
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.63 E-value=3.4e-16 Score=133.13 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=68.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccC-------CCcEEEE
Q 015941 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk-------~~s~I~v 72 (398)
|+++||.+.++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|||+ .+++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 78888888776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 015941 73 MLT 75 (398)
Q Consensus 73 ~v~ 75 (398)
++|
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-15 Score=129.27 Aligned_cols=77 Identities=34% Similarity=0.525 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
++|+||+++|+++.++|++++||.+||.+|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+...
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 48999999999999999999999999999999999 999999999999999999999999999999999999877643
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=129.15 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.4
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCcEEEEE
Q 015941 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~dLK~~I~~~~-g~~~ip~~~QkLIf~GK~L~D~~tL~d~--gIk~~s~I~v~ 73 (398)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. |. +++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 456999999999999999999999 99999999985
No 63
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=133.28 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCcccccccCCCcE--E
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET------VQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--V 70 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~------~~g~~~i--p~~~QkLIf~GK~L~D~~tL~d~gIk~~s~--I 70 (398)
|+|+||+++|+++.|+|++++||.+||++|+. +.+ + ++++|||||+||+|+|+++|++|+|+++++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999998 445 5 589999999999999999999999998874 5
Q ss_pred EEEEecC
Q 015941 71 VVMLTKS 77 (398)
Q Consensus 71 ~v~v~k~ 77 (398)
||+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 6666543
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.3e-16 Score=130.64 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+||+ +|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 899999999999999999999999999 99999999999999999999999999999999999764
No 65
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=7.2e-16 Score=129.40 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.4
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl---~g~~~~ieV~~-~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+||++ +|+.+.++|++ ++||.+||.+|+...| +|+++|||+|+|++|+|+.+|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999988
Q ss_pred CCC
Q 015941 77 SKV 79 (398)
Q Consensus 77 ~~~ 79 (398)
++.
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 66
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.5e-15 Score=122.91 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~-----~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D-~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+||+ .|++|.|+|+++ .||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999985 999999999999999 99999999999999998 6689999999999999997
Q ss_pred ecC
Q 015941 75 TKS 77 (398)
Q Consensus 75 ~k~ 77 (398)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=1.2e-15 Score=123.37 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~i-eV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI---f~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+||. .|++|.| +|++++||.+||.+|++++| +|+++|||+ |+||.|+|+.+|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999999753
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=136.25 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|||+++++|+|+++.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeecccc
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999997653
No 69
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.61 E-value=1.1e-15 Score=140.34 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=74.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.++..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987644
No 70
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.6e-15 Score=120.31 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
+++++++|++|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567788999999999999999999999999999 9999999999999999999999999999999999864
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=2.3e-15 Score=133.18 Aligned_cols=72 Identities=29% Similarity=0.411 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI-f-~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+||+++|++|.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+++|++|||++|++|+|+++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 89999999999999999999999999999999999 999999999 9 799999999999999999999999987
No 72
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=1.1e-15 Score=124.97 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+|| +.+++|.|+|++++||.+||++|+.++| +|+++|||+|+||.| |+.+|++|+|+++++|+||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 5789999999999999999999999999 999999999999999 5569999999999999998754
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=3.9e-15 Score=124.13 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015941 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gI-k~~s~I~v~v~k 76 (398)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|+++|||||+||.|+|+++|.+||| ++|++|||++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999984 6899999999999999999999999 99999999999999999999999999 599999999853
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.58 E-value=1.2e-16 Score=137.68 Aligned_cols=77 Identities=35% Similarity=0.540 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999887643
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.57 E-value=9.5e-15 Score=127.30 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998643
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=132.89 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|.+|+|++|++|||+++.++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999998764
No 77
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=123.58 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=67.0
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 2 kI~VK-tl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
.|+|+ ...++.|.++++++.||.+||++|+.+.+ +|+++|+|||+||+|+|+.||++|||++|.+|||+++..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 45688999999999999999999999999 999999999999999999999999999999999999753
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.1e-14 Score=126.85 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998764
No 79
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.55 E-value=4.6e-16 Score=138.17 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.++..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977654
No 80
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.2e-14 Score=122.67 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=70.3
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEE
Q 015941 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (398)
Q Consensus 1 MkI~VKtl----------~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I 70 (398)
++|+|+.. +|+++.|+|++++||.+||.+|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 578999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 015941 71 VVMLTKSKVS 80 (398)
Q Consensus 71 ~v~v~k~~~~ 80 (398)
||+++.++..
T Consensus 103 ~lv~rl~GGk 112 (115)
T 1we7_A 103 HLALKERSGP 112 (115)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999987643
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=118.42 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCcccccccCCCcEEEE
Q 015941 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g~~~--~i-eV~~~~TV~dLK~~I~~~-~g~~~ip~~~QkLIf~--GK~L~D~~tL~d~gIk~~s~I~v 72 (398)
|+|+||+++|+++ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|+|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7999999998775 58 999999999999999995 67 99999999976 99999999999999999999775
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=119.01 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf--~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|.+++++++|+++.|+|++++||.+||.+|++++| +|+++|||+| .|+ |+|+.+|++|+|+.|++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 66788889999999999999999999999999999 9999999996 566 99999999999999999999764
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=7e-14 Score=136.91 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|++|.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998763
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=1.2e-13 Score=111.21 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=63.9
Q ss_pred EEEEE--eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCcccccccCCCcEEEE
Q 015941 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 2 kI~VK--tl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf-------~GK~L~D~~tL~d~gIk~~s~I~v 72 (398)
+|.|. ..+.+.+++.|++++||.+||.+|+.++| +|+++||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 34444 34556789999999999999999999999 9999999997 489999999999999999999999
Q ss_pred EEecC
Q 015941 73 MLTKS 77 (398)
Q Consensus 73 ~v~k~ 77 (398)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97654
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.42 E-value=2.1e-13 Score=113.90 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCccccccc
Q 015941 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK-----------~----L~D~~tL~d~gI 64 (398)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ +|+++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCcEEEEEEe
Q 015941 65 AENSFVVVMLT 75 (398)
Q Consensus 65 k~~s~I~v~v~ 75 (398)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.41 E-value=2e-14 Score=131.48 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|||+++.+...
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 89999999999999999999999999999999999 9999999999999999999998 889999999987543
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.41 E-value=5.9e-13 Score=109.10 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCcccccccCCCcEEEE
Q 015941 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~--GK---~L-~D~~tL~d~gIk~~s~I~v 72 (398)
++|+|+.-.+ +.++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|||++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4789999999999999999999999 99999999997 55 34 8999999999999999998
Q ss_pred E
Q 015941 73 M 73 (398)
Q Consensus 73 ~ 73 (398)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 88
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=112.99 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCC-CC
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EF 396 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~-d~ 396 (398)
+.|++|++|||++..|++||.+|++|++.|++|||+++. |.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 569999999999999999999999999999999999877 54
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.37 E-value=1.1e-12 Score=107.91 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=62.3
Q ss_pred EEEEEeCC--CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015941 2 KVFVKTLK--GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 2 kI~VKtl~--g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G---K~----L~D~~tL~d~gIk~~s~I~v 72 (398)
+|+|+.-. ++.++++|++++||.+||++|+.++| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 56777543 35789999999999999999999999 999999999988 43 58899999999999999999
Q ss_pred EEe
Q 015941 73 MLT 75 (398)
Q Consensus 73 ~v~ 75 (398)
+-+
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=106.43 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015941 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G---K~----L~D~~tL~d~gIk~~s~I~v 72 (398)
++|+|+..... .++++|++++||.+||.+|+.+.| +|+++|||+|.| +. |+|+++|.+|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778876543 689999999999999999999999 999999999986 54 58999999999999999999
Q ss_pred EEec
Q 015941 73 MLTK 76 (398)
Q Consensus 73 ~v~k 76 (398)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=104.86 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ie-V~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~--GK~L~---D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+||+.+|+. .++ |++++||.+||.+|+++.| +++++|+|+|+ +|.|. |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999965 477 9999999999999999999 99999999986 58874 68899999999999998875
Q ss_pred e
Q 015941 75 T 75 (398)
Q Consensus 75 ~ 75 (398)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=2.8e-12 Score=104.82 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+.+|+.+.+.|.+++++..||.+++++.| +++.++||+|+|+.|.++.|+++|++.++|+|+|+++.++.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987664
No 93
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.32 E-value=1.9e-12 Score=90.84 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
.++.|++|++|| |+|++|++|||+++||++||++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368899999999 9999999999999999999999999986
No 94
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.31 E-value=2.3e-12 Score=100.49 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.9
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
...+++.|++||+|| |+|++|++|||+++||++||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 356789999999999 99999999999999999999999999954
No 95
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.30 E-value=3.9e-12 Score=99.36 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCCCCC
Q 015941 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GIP~~ 217 (398)
...|+..|++|++|| | +|+.|++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 467899999999999 9 899999999999999999999999999864
No 96
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.28 E-value=3.7e-12 Score=90.77 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
..|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35789999999999 9 78999999999999999999999987
No 97
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.27 E-value=2.7e-12 Score=126.67 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI---f~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||.|+|+.+|++|||++|++|+||.+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578999 5899999999999999999999999999 999999999 8999999999999999999999999964
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=105.58 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015941 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G---K~----L~D~~tL~d~gIk~~s~I~v 72 (398)
|+|+|+...+. .++++|++++||.+||.+|+...| +|+++|||+|.| +. ++|+++|.+|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999977 43 48899999999999999999
Q ss_pred EEecC
Q 015941 73 MLTKS 77 (398)
Q Consensus 73 ~v~k~ 77 (398)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 99
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.27 E-value=1.8e-11 Score=94.99 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+||+.+|+.+.+.|.+++++..|+..++++.| +++.++||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999874
No 100
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.25 E-value=2.3e-11 Score=98.86 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+.+|+.+.+.|.+++++..||..++++.| +++.++||+|+|+.|.++.|.++|++.+||+|.|++...+.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999887653
No 101
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.22 E-value=1e-11 Score=91.09 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
..|+..|+.|++|| | +|+.|++||++++||.+||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 56899999999999 9 9999999999999999999999999875
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.21 E-value=5.4e-11 Score=94.02 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
|+|+|++.+|+ .+.+.|..++++..||..++++.| ++++++||+|.|+.|.++.|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67899999996 899999999999999999999999 99999999999999999999999999999999987
No 103
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.21 E-value=1.3e-11 Score=98.30 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc--C-CCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 218 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~--G-IP~~~ 218 (398)
.+..|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 478999999999 99999999999999999999999999 7 77654
No 104
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.19 E-value=4.8e-11 Score=97.25 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889999999999999999999999999999999 899999999999999999999999999999999998764
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=4.7e-11 Score=99.38 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+||+.+|+.+.+.|..++++..||..++++.| +++..+||+|.|+.|.++.|+.+|++.++++|+|++...+.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999877653
No 106
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.19 E-value=2.7e-11 Score=88.52 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
...|+..|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 356899999999999 9 99999999999999999999999976
No 107
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.18 E-value=2.1e-10 Score=97.50 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 353 ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
+....|.+|++|||++.+|.+|+..|+.|.+.|+.|||..
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4557899999999999999999999999999999999965
No 108
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.17 E-value=2.4e-11 Score=92.23 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~ 216 (398)
.++.|++|++|| |+|++|++|||+++||++||||||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999999543
No 109
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.14 E-value=4.2e-11 Score=83.89 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 355 ~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
.++|++|++|||++++|++||.+|++|++.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999986
No 110
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.14 E-value=3.8e-11 Score=89.58 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=39.8
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
...|+..|++|++|| | +|+.+++||+++++|++||||||++|.
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 356899999999999 9 799999999999999999999999983
No 111
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.13 E-value=4.9e-11 Score=91.21 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCCCCC
Q 015941 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GIP~~ 217 (398)
..|+..|.+|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 56889999999999 9 788889999999999999999999998863
No 112
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.12 E-value=9.1e-11 Score=98.59 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
|+|+|++.+|+.+.+.|..++++..||..++++.| +++.++||+|.|+.|.++.|+++|++.++|+|+|++...+
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987654
No 113
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=90.82 Aligned_cols=42 Identities=40% Similarity=0.706 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~ 216 (398)
.+..|++||+|| |+|++|++|||+++||++||||||+.++++
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 578999999999 999999999999999999999999999775
No 114
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.10 E-value=1.6e-10 Score=96.40 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|+|+|++ +|+.+.+.|..++++..||..++++.| +++.++||+|.|+.|.++.|.++|++.++|+|+|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 899999999999999999999999999999999998764
No 115
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.07 E-value=1.3e-10 Score=90.75 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999999843
No 116
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.05 E-value=1.6e-10 Score=79.34 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~ 211 (398)
+++++.|++||+|| |+|++|++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999995
No 117
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.04 E-value=1.1e-10 Score=88.85 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHcCCCC
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPE 216 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NPdRAvEYL~~GIP~ 216 (398)
...+..|++|++|| |+|+.|++||++++| |+++|++||+.++++
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 34567899999999 999999999999999 999999999999875
No 118
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.03 E-value=1.5e-10 Score=88.04 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHh-cChHHHHHHHHcCCCCC
Q 015941 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (398)
Q Consensus 173 e~~I~~i~~MG~~~f~r~qv~~ALrAaf-nNPdRAvEYL~~GIP~~ 217 (398)
+..|++||+|| |+|++|++|||+++ +|+++||+||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 46899999999 99999999999995 89999999999998753
No 119
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.7e-10 Score=89.15 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=39.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHcCCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NPdRAvEYL~~GIP~~ 217 (398)
.+..|++||+|| |+|++|++|||+++| |.+||+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 120
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.02 E-value=2e-10 Score=87.14 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
+.++|++|++|||++++|++||.+|++|.+.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4578999999999999999999999999999999999986553
No 121
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=2e-10 Score=87.40 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHcCCC
Q 015941 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (398)
Q Consensus 173 e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NPdRAvEYL~~GIP 215 (398)
+..|++||+|| |+|++|++|||++.| |+++|||||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 56899999999 999999999999998 99999999999864
No 122
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=81.31 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.+..|++|++|| |+|++|++|||++ ||++||+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 7999999999864
No 123
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=1e-09 Score=89.53 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCcccccccCCCcEE
Q 015941 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (398)
Q Consensus 2 kI~VKt---l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G------K~-L-~D~~tL~d~gIk~~s~I 70 (398)
+|+|+. .+|+.+.+.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|+.+|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566765 4678899999999999999999999999 999999999863 23 5 56789999999999999
Q ss_pred EEEEec
Q 015941 71 VVMLTK 76 (398)
Q Consensus 71 ~v~v~k 76 (398)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 124
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.96 E-value=4.9e-10 Score=87.27 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=43.7
Q ss_pred ccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 348 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 348 ~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
.+.+++..++|++|++|||+|++|++||.+|++|.+.|++|||++...
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 567778888999999999999999999999999999999999987543
No 125
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=7.8e-10 Score=84.12 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 397 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~-ne~~A~~~L~~~~~d~~ 397 (398)
+.|++|++|||++..|++||.+|++ |++.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5799999999999999999999997 99999999999987754
No 126
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.94 E-value=9.5e-10 Score=88.17 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~~ 397 (398)
+.++|++|++|||+|+.|++||.+|++|++.|++|||++..|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 46779999999999999999999999999999999999988866
No 127
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.94 E-value=8.7e-10 Score=79.47 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 352 ~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
++..+.|++|++|||+|++|+.|+.+|++|.+.|++|||++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 456778999999999999999999999999999999999864
No 128
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.94 E-value=8.8e-10 Score=75.59 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHh
Q 015941 352 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 390 (398)
Q Consensus 352 ~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~ 390 (398)
++..++|++|++|||++++|++||.+|++|.+.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 455678999999999999999999999999999999997
No 129
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=8.7e-10 Score=82.03 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=45.7
Q ss_pred cccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCC
Q 015941 347 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 394 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~ 394 (398)
+..|++.|.++|+.|+.|||++++++.|+-+|+.|.|.|++|||+|+.
T Consensus 12 l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 467999999999999999999999999999999999999999999965
No 130
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=87.33 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~~ 217 (398)
.+..|++||+|| |+|++|++|||+++||.++|+|||++++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 578999999999 9999999999999999999999999997653
No 131
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.90 E-value=9.9e-10 Score=87.94 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHcCCCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NPdRAvEYL~~GIP~~ 217 (398)
.+..|++||+|| |+|++|++|||+++| |.++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999998753
No 132
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1e-09 Score=85.81 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 397 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~-ne~~A~~~L~~~~~d~~ 397 (398)
+.+.|++|++|||++..|++||.+|++ |+|.|++|||++..|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 456799999999999999999999995 89999999999987654
No 133
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.6e-10 Score=87.78 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 397 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~~ 397 (398)
+.++|++|++|||++..|++||.+|++|++.|++|||++..|.+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 45679999999999999999999999999999999999876643
No 134
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.90 E-value=1.3e-09 Score=82.81 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015941 356 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 397 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac-~~ne~~A~~~L~~~~~d~~ 397 (398)
+.|++|++|||++..|++||.+| ++|++.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 57999999999999999999999 7999999999999877654
No 135
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.88 E-value=1.5e-09 Score=79.16 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=36.1
Q ss_pred HHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 356 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 356 ~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
..|++|++||| +|+.|++||.+|++|.+.|++|||+++
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 67999999999 999999999999999999999999874
No 136
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.86 E-value=1.7e-09 Score=84.41 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 351 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 351 t~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
++.+.+.|++|++|||+|++|++||.+|++|++.|++|||++..|.
T Consensus 26 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 4456678999999999999999999999999999999999987664
No 137
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.86 E-value=1.8e-09 Score=80.34 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
-++.|..|++|| |.++|+.+||++.-||.+||+|||++-
T Consensus 19 e~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 19 ERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367899999999 999999999999999999999999975
No 138
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.85 E-value=3.4e-09 Score=77.59 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=38.1
Q ss_pred CHHHH--HHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 351 TPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 351 t~ee~--~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
++|+. +.|++|++||| +++.|++||.+|++|.+.|++|||++.
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 34554 34999999999 999999999999999999999999875
No 139
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=8.8e-10 Score=83.51 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
+.+.|++|++|||+|+.|++||.+|++|.+.|++|||++..|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3567999999999999999999999999999999999986554
No 140
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.83 E-value=3e-09 Score=80.85 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 397 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~-ne~~A~~~L~~~~~d~~ 397 (398)
+.|++|++|||+++.|++|+++|++ |++.|.||||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 4699999999999999999999975 99999999999987643
No 141
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.83 E-value=3e-09 Score=91.16 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
.+..|++|++|| |+|++|++|||+++||++||+|||++|++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 142
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.81 E-value=4.4e-09 Score=77.31 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.1
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 171 ~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
.|+..|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4789999999999 9 556689999999999999999999874
No 143
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.81 E-value=4.5e-09 Score=87.67 Aligned_cols=43 Identities=35% Similarity=0.514 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
..++..|++|++|| | +|+.+++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 35789999999999 9 7899999999999999999999999854
No 144
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.81 E-value=4.7e-09 Score=75.53 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
+.|++|++|||+|++||+|+..|++|+++|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6899999999999999999999999999999999975
No 145
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.9e-09 Score=75.96 Aligned_cols=39 Identities=31% Similarity=0.572 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
+.+.|++|++|||+++.|++||.+|+ |.|.|++|||+++
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 34679999999999999999999996 9999999999874
No 146
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.77 E-value=2.8e-08 Score=83.90 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
|+|+|++.+|+.+.+.|..++++..|+...+++.| +++..+||+|.|+.|.++.|..++++.+||+|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788888899999999999999999999999999 99999999999999999999999999999999999753
No 147
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.77 E-value=1e-08 Score=72.93 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=34.0
Q ss_pred HHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 356 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 356 ~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
..|++|++||| +++.+++|+.+|++|.+.|++|||++
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34999999999 68889999999999999999999974
No 148
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.74 E-value=8.3e-09 Score=74.59 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
..|++|++|||+|++||+|+..|++|+|+|+|+|++.-
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44999999999999999999999999999999999753
No 149
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.74 E-value=7.3e-09 Score=82.87 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 397 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac-~~ne~~A~~~L~~~~~d~~ 397 (398)
+.++|++|++|||+|..|++|+++| ++|++.|++|||++..|.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 5678999999999999999997766 5899999999999877643
No 150
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.73 E-value=1.1e-08 Score=81.43 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
..+.|++|++|||+|++|++||.+|++|++.|++|||+|..+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 356799999999999999999999999999999999998664
No 151
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.73 E-value=1e-08 Score=82.21 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 173 e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
+..|++|++|| |+|++|++||++.++|++||+|||+...
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 78999999999 9999999999999999999999999863
No 152
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.62 E-value=4.5e-08 Score=76.35 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 355 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 355 ~~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
.+.|++|++||| +|+.+++|+.+|++|++.|++|||++...+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 345999999999 799999999999999999999999986543
No 153
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.62 E-value=7.4e-09 Score=73.94 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.4
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 171 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
+-+++|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999875
No 154
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.60 E-value=4.4e-08 Score=72.96 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=37.4
Q ss_pred CHHHH--HHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 351 TPEER--EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 351 t~ee~--~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
.+|++ ..|++|++||| +++.+++|+.+|++|.+.|++|||+++
T Consensus 12 ~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 12 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp SHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 34553 35999999999 688999999999999999999999874
No 155
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.60 E-value=4.9e-08 Score=71.69 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 355 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 355 ~~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
.+.|++|++||| +++.+++|+.+|++|++.|++|||+++..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 356999999999 55668999999999999999999988643
No 156
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.57 E-value=9.5e-08 Score=72.97 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=41.0
Q ss_pred ccCCHHHHH--HHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 348 VTVTPEERE--AIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 348 ~~lt~ee~~--ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
....+|++. .|++|++||| +++.+++|+.+|++|.+.|++|||++..+.
T Consensus 11 ~~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 344567744 4999999998 777789999999999999999999986653
No 157
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.2e-07 Score=85.58 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
++|+|+ .+|+.+.+.|..++++..||+.++++.| ++..++||+|.|+.|.++.|..++++.+||+|+|++...+..
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4889999999999999999999999999 999999999999999999999999999999999999876654
Q ss_pred C
Q 015941 81 S 81 (398)
Q Consensus 81 ~ 81 (398)
.
T Consensus 106 k 106 (200)
T 3pge_A 106 G 106 (200)
T ss_dssp -
T ss_pred C
Confidence 3
No 158
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.49 E-value=1.5e-07 Score=67.73 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
.+..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457999999999 99999999999999999999999974
No 159
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.7e-07 Score=85.39 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|+|+.|.++.|..++++.++|+|.|++...+.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 356776 4888999999999999999999999999 99999999999999999999999999999999999877654
No 160
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.47 E-value=9.5e-08 Score=75.55 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~---L--~D~~tL~d~gIk~~s~I~v~ 73 (398)
|.|.||+.+| ++.|+|++++||.+||.+|.+..+ ++.+.|.|.++-.. | .++.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998877 778999999999999999999999 88888777554332 3 46789999999999999864
No 161
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.46 E-value=1.8e-07 Score=67.81 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 353 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 353 ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
.-.+.|.+|++|||+|+.|++|+..|+.|.|+|.|+|+|-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3345799999999999999999999999999999999974
No 162
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.43 E-value=2.6e-07 Score=66.78 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
.+..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356799999999 99999999999999999999999984
No 163
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.41 E-value=1.8e-07 Score=79.43 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
+.+.|.+|++|| |++++|+.||+..-||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 164
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.40 E-value=2.4e-07 Score=85.40 Aligned_cols=74 Identities=26% Similarity=0.273 Sum_probs=54.6
Q ss_pred CHHHHHHHHHCHHHHHHHhcCCCCCCCCCccccccccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHH
Q 015941 307 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 386 (398)
Q Consensus 307 nP~L~q~I~~n~e~Fl~~l~~~~~~~~~~~~~~~~~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~ 386 (398)
|++..++...|++.|.+...+-... ... .....++-.+.|++|++|||+|++|++|+..|+||++.|.
T Consensus 128 n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~ 195 (201)
T 3k9o_A 128 DAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETAT 195 (201)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHH
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHH
Confidence 5677778888888887765432110 000 0012334467899999999999999999999999999999
Q ss_pred HHHhcc
Q 015941 387 NYLLDH 392 (398)
Q Consensus 387 ~~L~~~ 392 (398)
++||++
T Consensus 196 e~L~~~ 201 (201)
T 3k9o_A 196 ELLLSN 201 (201)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999975
No 165
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.36 E-value=4.6e-07 Score=63.32 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 355 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 355 ~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
..+|.+|+.|||+++.|++|+..|+.|.|+|.|.|++.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 35799999999999999999999999999999999875
No 166
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.35 E-value=6.4e-07 Score=62.57 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
|+.+|..|..||+|| |+|+.|++||-.|-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 577899999999999 99999999999999999999999973
No 167
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.27 E-value=4.5e-06 Score=65.29 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
.+.++..+...+.+.|.++.+|.+|-+..+.+.| ++.. ..+|+|.|..|..+.++.||++.++|.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4566777777899999999999999999999999 9999 99999999999999999999999999999986
No 168
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.26 E-value=8.4e-07 Score=73.94 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccCC
Q 015941 355 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMH 394 (398)
Q Consensus 355 ~~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~~ 394 (398)
.+.|++|++||| +++.+++||.+|++|++.|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 457999999999 7789999999999999999999998753
No 169
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=63.63 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.|..|..||+|| |+|+.|++||+.+-||.+-|-..|+.=
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 578999999999 999999999999999999999999853
No 170
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.20 E-value=1e-06 Score=81.17 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.4
Q ss_pred cCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 167 ~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
..+..+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 45678999999999999 99999999999999999999999985
No 171
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.19 E-value=2e-07 Score=86.00 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
|+|+| +.+|+.+.+.|..++++..||+..+++.| +++..+||+|+|+.|.++.|.+++++.+||+|.|+....+.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56777 66888899999999999999999999999 99999999999999999999999999999999999876554
No 172
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.18 E-value=1.5e-06 Score=82.86 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=57.6
Q ss_pred hCHHHHHHHHHCHHHHHHHhcCCCCCCCCCccccccccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHH
Q 015941 306 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 385 (398)
Q Consensus 306 ~nP~L~q~I~~n~e~Fl~~l~~~~~~~~~~~~~~~~~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A 385 (398)
-|++..++...|++.|.+...+-... ... .....++-.+.|++|++|||+++.|++|+..|+||++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47788899999999998876432110 000 011234556789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015941 386 ANYLLDH 392 (398)
Q Consensus 386 ~~~L~~~ 392 (398)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999975
No 173
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.14 E-value=3.3e-06 Score=69.64 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 353 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 353 ee~~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
+-.+.|++|++| ||++++|+.||..|++|++.|+++||+...|
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 334669999999 9999999999999999999999999988643
No 174
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.14 E-value=9.2e-06 Score=66.52 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=63.2
Q ss_pred EEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 2 KVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 2 kI~VKtl~g~-~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
+|+|+.-+|+ .+.+.|..+.++..|....+++.| +++...||+|.|..|..+.|..++++.+||+|.|+
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 5677777784 788999999999999999999999 88999999999999999999999999999999886
No 175
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.11 E-value=1.7e-06 Score=63.20 Aligned_cols=47 Identities=28% Similarity=0.244 Sum_probs=40.6
Q ss_pred CCHHHHHH--HHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 350 VTPEEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 350 lt~ee~~a--i~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
+.+||+.+ +++|.+||| |++..++++..|++|.+.|++.|+.....|
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CCHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 34566666 889999999 999999999999999999999999765443
No 176
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.07 E-value=4.9e-06 Score=68.60 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCCC
Q 015941 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (398)
Q Consensus 170 ~~~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP~ 216 (398)
.+++..|+.||+| | |++++|+.||.-+-++.++|++||+.|.++
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4578999999999 9 999999999999999999999999999874
No 177
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.89 E-value=5.6e-06 Score=82.92 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 354 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 354 e~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
..++|.+|++|||+|++|++|+.+|++|.+.|++|||++..|.
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 210 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 4567999999999999999999999999999999999886653
No 178
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.85 E-value=3.6e-05 Score=71.21 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=67.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~ 79 (398)
.|+|+. +++.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.++.+..++.+.++|+|.++......
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 566776 677888999999999999999999999 99999999999999999999999999999999999876553
No 179
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.85 E-value=6.5e-05 Score=61.02 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
+.|.|+ .+|..+.+.|..++....|.+..+.+.| +.+...|++|.|..+.++.|-.++++.++|+|.+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357777 4788899999999999999999999999 89999999999999999999999999999999999864
No 180
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.81 E-value=1.7e-05 Score=57.88 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHHcCCCCC-CHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 169 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f-~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
-+.|...+.+|.+|| | +++..++|||...+|.+|||+.|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 356778999999999 9 99999999999999999999999975
No 181
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.79 E-value=1.7e-05 Score=71.11 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.++-+++|++|++|| |+|+.|++|+.++.+|.+.|++||+.+
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345678899999999 999999999999999999999999976
No 182
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.72 E-value=8.7e-05 Score=60.33 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=51.5
Q ss_pred EEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecC--CCCccccccc-CCCcEEEEEE
Q 015941 4 FVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK--DVTTLEENKV-AENSFVVVML 74 (398)
Q Consensus 4 ~VKtl-~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~--D~~tL~d~gI-k~~s~I~v~v 74 (398)
.|=.+ ++..++|.|.+++||..||++|++++| +++++|+|||.||.|. .++.-..|-- ...+-|.|+-
T Consensus 16 HVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 16 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 34344 466788999999999999999999999 9999999999998764 4555556543 3445555553
No 183
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.69 E-value=6.5e-05 Score=59.45 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=58.9
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCcccccccCCCcEEEE
Q 015941 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 2 kI~VKt--l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~--~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v 72 (398)
+|+|.. ..++.|.+.|+...||+.|+..+.+.++....+. ...|+.-+|..|.+++.|.||+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 5789999999999999999999999988431111 2457788999999999999999999999876
No 184
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.63 E-value=7.3e-06 Score=81.57 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~ 78 (398)
++|+|++ +|+.+.+.|..++++..|++..+++.| +++..+|++|+|+.|.++.|.+++++++||+|.|+....+
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3566776 677788999999999999999999999 8999999999999999999999999999999999987544
No 185
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.61 E-value=9.3e-05 Score=63.42 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=56.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-------------------------------------~Q 44 (398)
.|+|+.++|...++.|+.+.||.+++..|+.+.| ++.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3889999999999999999999999999999999 5433 44
Q ss_pred EEEe--CCeecCCCCcccccccCCCcEEEEE
Q 015941 45 MLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 45 kLIf--~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
||.. .+.-|+++.+|.++||.++++|.|-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2366788999999999999996543
No 186
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.51 E-value=0.00032 Score=56.43 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
|.|+|-..+++.+.|.|.++.++.++-+..+.++| +.+++-.|.|++|.|+-+..+.-.||-+|..|.++.+.+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67899989999999999999999999999999999 888899999999999889999999999999999986543
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.39 E-value=2.4e-05 Score=78.53 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k~~~~ 80 (398)
.|+|+. ++..+.+.|..++++..||+..+++.| ++..+++|+|.|+.|.++.|.+++++.+|++|.+++...+..
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 456665 667778999999999999999999999 999999999999999999999999999999999998765533
No 188
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.34 E-value=0.00072 Score=53.28 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC---CCCcccccccCCCcEEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI--f~GK~L~---D~~tL~d~gIk~~s~I~v~ 73 (398)
+|.||..+|+.+.-.+..++||.+|...|.. .+ ++....+|+ |-.|.|. .+++|.++|+..+.+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999888889999999999999987 56 667888998 6688884 4689999999998888774
No 189
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.32 E-value=0.0019 Score=53.60 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=60.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCcccccccCCCcEEEEEEe
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI--f~GK~L~--D-~~tL~d~gIk~~s~I~v~v~ 75 (398)
+|.||..+|+.+.-.+..++||.+|...|....+ .+....+|+ |-.|.|. | +++|+++|+....+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999999877 556777886 6788886 4 68999999998877776643
No 190
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.27 E-value=0.00033 Score=50.71 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-ChHHHHHHHHc
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYS 212 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafn-NPdRAvEYL~~ 212 (398)
.-++++.|++|| |+++-|++||+..-| ..+-|+|||.-
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 457899999999 999999999999877 79999999973
No 191
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.12 E-value=0.0004 Score=66.07 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=40.8
Q ss_pred ccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 166 l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
-+.+.+|++.|++|++|| |+|++|+.||+..-+|-++|+|||+.
T Consensus 209 ~~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 209 PVSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345678999999999999 99999999999999999999999985
No 192
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.00052 Score=75.62 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015941 356 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 395 (398)
Q Consensus 356 ~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d 395 (398)
+.|..|.+|||++.++++|+.+|+.|.+.|++|||+++.|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 5578889999999999999999999999999999998654
No 193
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.83 E-value=0.00022 Score=66.33 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=14.8
Q ss_pred CHHHHHHHHHCHHHHHHHhcCCCCCCCCCccccccccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHH
Q 015941 307 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 386 (398)
Q Consensus 307 nP~L~q~I~~n~e~Fl~~l~~~~~~~~~~~~~~~~~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~ 386 (398)
|++..++...|++.|.+...+-...-.. .. . ..+-.+.|++|++|||+++.++.|+..|+||++.|.
T Consensus 143 n~eaa~~~~~d~~~f~~~ar~~t~~ya~-------~~---~---~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~ 209 (216)
T 2pwq_A 143 DAEVAKMYKENHALFVKTASVWTKTFAT-------GP---K---EEPREVIIKKITEMGFSEDQAKNALIKANWNETLAL 209 (216)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHSC-------CC-------------------------------------------
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhcC-------CC---c---ccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHH
Confidence 5666677777777777664322100000 00 0 002246799999999999999999999999999999
Q ss_pred HHHhcc
Q 015941 387 NYLLDH 392 (398)
Q Consensus 387 ~~L~~~ 392 (398)
+.||++
T Consensus 210 ~~l~~~ 215 (216)
T 2pwq_A 210 NTLLEN 215 (216)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999974
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.70 E-value=0.0037 Score=53.06 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=58.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCcccccccCCCcEEEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVML 74 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI--f~GK~L--~D-~~tL~d~gIk~~s~I~v~v 74 (398)
+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.....|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999988999999999999999886 6 667788887 678999 44 7899999999888777653
No 195
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.28 E-value=0.023 Score=46.90 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=57.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC-C-CCcccccccCCCcEEEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK-D-VTTLEENKVAENSFVVVML 74 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI--f~GK~L~-D-~~tL~d~gIk~~s~I~v~v 74 (398)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. | +++|+++||....+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999999888899999999999999865 4 456778886 6688886 3 6899999999888776653
No 196
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.22 E-value=0.014 Score=49.70 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=54.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCcccccccCCCcE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSF 69 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI--f~GK~L~D-~~tL~d~gIk~~s~ 69 (398)
+|.||..+|+.+.-.+..++||.+|...|...... +......|+ |-.|.|.| +++|.++|+.+..+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 58899999999999999999999999999886321 445677887 67899976 68999999997443
No 197
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.21 E-value=0.0061 Score=45.20 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015941 356 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHEF 396 (398)
Q Consensus 356 ~ai~rl~~l--Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~~d~ 396 (398)
+.|+.|.+| ++++..+..+|.+|++|.+.|.+.||+-.++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 568888998 56999999999999999999999999865543
No 198
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=95.68 E-value=0.0077 Score=55.83 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=46.2
Q ss_pred CHHHHHHHHHCHHHHHHHhcCCCCCC-CCCccccccccCCccccCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHH
Q 015941 307 NPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 384 (398)
Q Consensus 307 nP~L~q~I~~n~e~Fl~~l~~~~~~~-~~~~~~~~~~~~~~~~~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~ 384 (398)
|++..++...|++.|.+...+-...- .....+..+. -....+-..+.+.|+||++|||+++.|++||..|++|++.
T Consensus 123 n~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~~ 199 (215)
T 1tte_A 123 DAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGN--VEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLD 199 (215)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCC--CSCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccc--hhhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCccc
Confidence 55666667777777766542211000 0000000000 0123445567789999999999999999999999999843
No 199
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.45 E-value=0.0025 Score=59.22 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCC
Q 015941 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (398)
Q Consensus 171 ~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GI 214 (398)
.+++.|+++++|| |+|++|++||+..-.+-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4588999999999 9999999999999999999999999884
No 200
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.039 Score=41.76 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=42.7
Q ss_pred cccCCHHHHHHHHHHHHc-C-CChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 347 AVTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~l-G-f~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
...||.+..+.|.+++++ | -+...|++.+.+|+||-+.|++..|++.
T Consensus 11 ~~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 11 ERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 358899999999999997 8 6999999999999999999999999864
No 201
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.20 E-value=0.017 Score=42.71 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.7
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.|+.|..|.+| . ++++.|+..|++.-||.|+||+.|+.-
T Consensus 9 ~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 58999999999 6 899999999999999999999999975
No 202
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.15 E-value=0.015 Score=42.05 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhC-CCHHHHHHHHhccCC
Q 015941 353 EEREAIERLEAMGFDRALVLEVFFACN-KNEELAANYLLDHMH 394 (398)
Q Consensus 353 ee~~ai~rl~~lGf~~~~~~~a~~ac~-~ne~~A~~~L~~~~~ 394 (398)
+-+.-++.|.+||||++.|..|+-..+ |..+.|.+||+.-.+
T Consensus 8 vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 345669999999999999999998775 489999999985443
No 203
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.96 E-value=0.051 Score=40.40 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=42.4
Q ss_pred cccCCHHHHHHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 347 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
...|++...+.|.+++++ |-++..+++-+.+|+||.+.|++..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456788888899999997 89999999999999999999999999764
No 204
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.96 E-value=0.1 Score=41.31 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=58.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCcccccccCCCcEEEEEEecC
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf---~GK~L~D~~tL~d~gIk~~s~I~v~v~k~ 77 (398)
++.|.....+++.+.|++..++.+|--.|+++.. +.++.-.|.. .+..|+-+++|.||||++ +..+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5677777788899999999999999999999987 8888888864 466788899999999997 66665554
No 205
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.51 E-value=0.058 Score=37.22 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 354 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 354 e~~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
..+.|.+.+++ |-++..+++-+.+|+||-+.|++..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999987 89999999999999999999999999764
No 206
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.45 E-value=0.11 Score=39.87 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
|+|+||........+++....||.+|-++ .| ++++..-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977555566899999999998754 56 8888887788999987655 3348888776
No 207
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.41 E-value=0.074 Score=40.35 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred CCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 168 ~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.+.+++..|+.|.+|= -.++++-|+..|++.-+|.|+||+-|+.-
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4677899999999991 12799999999999999999999999863
No 208
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.36 E-value=0.12 Score=39.66 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=43.7
Q ss_pred cCCcchHHHHHHHHHc--CCCCCCHHHHHHHHHHHhcChHHHHHHHHcC-CCCCCC
Q 015941 167 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (398)
Q Consensus 167 ~~g~~~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNPdRAvEYL~~G-IP~~~~ 219 (398)
+.+.+.+..|..|.++ - |....|.++|..--+|+++.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4678899999999997 4 779999999999778999999999999 777654
No 209
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.35 E-value=0.057 Score=38.47 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=35.9
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~M--G~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.+..|+.|.|| . -++++|.++|+++-+|-||||.-|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 4 599999999999999999999999987
No 210
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.75 E-value=0.085 Score=39.99 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHHHHHHHHc--CCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 354 EREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 354 e~~ai~rl~~l--Gf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
..+++++|.+| .+++..+..+|.+|++|.+.|++.||+-
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34569999999 4589999999999999999999999963
No 211
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.70 E-value=0.32 Score=40.36 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CcccccccCC
Q 015941 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (398)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLIf----~GK~L~D~-------------~tL~d~gIk~ 66 (398)
+..+.+.|-..+||..+|+||-...-+. +| ++.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457788888999999999999765332 33 34556665 35778762 2688999999
Q ss_pred CcEEEEEE
Q 015941 67 NSFVVVML 74 (398)
Q Consensus 67 ~s~I~v~v 74 (398)
|.+|.|+-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 212
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=93.64 E-value=0.05 Score=59.90 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
...++.|..|++|| |++++.++||++.-||.+|||+||.+.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34578999999999 999999999999999999999999985
No 213
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=93.59 E-value=0.041 Score=42.34 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=32.8
Q ss_pred hHHhhccHHHH--HHHHHHHhChHHHHHHhhhCHHHHHHHHHC
Q 015941 277 LDFLRNSQQFQ--ALRTMVQANPQILQELGKQNPHLMRLIQEH 317 (398)
Q Consensus 277 l~~Lr~~P~f~--~lrq~vq~nP~lLqqi~~~nP~L~q~I~~n 317 (398)
.+.+++||++. -|.++-++||++++.|.++.-+|+++|++.
T Consensus 19 R~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 19 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCC
Confidence 35566799976 678899999999999987766799998653
No 214
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.53 E-value=0.29 Score=44.97 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=50.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEE--e-CC--eecCC-CCcccccccCCCcEEEEEEec
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLI--f-~G--K~L~D-~~tL~d~gIk~~s~I~v~v~k 76 (398)
+++.++..+||.+|+++++..++ ++.+ +.||- | .+ ..|.| +++|.+++|.++..|+|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 68873 4 23 34666 579999999999999988764
No 215
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.38 E-value=0.44 Score=35.78 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=44.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+|..-. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -|++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566666332 23566777778999999875 4 5566777889999997655 588999998873
No 216
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.13 E-value=0.47 Score=44.03 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCcccccccCCCcEEEEEEec
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLIf-~----GK~L~D-~~tL~d~gIk~~s~I~v~v~k 76 (398)
+++.++..+||.+|+++++..++ ++.+ +.||-. . ...|.| +.+|.+++|.++..|.|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55678999999999999999999 8887 688842 2 345766 689999999999999888775
No 217
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=92.56 E-value=0.065 Score=39.91 Aligned_cols=38 Identities=21% Similarity=0.576 Sum_probs=29.6
Q ss_pred HhhccHHHH--HHHHHHHhChHHHHHHhhhCHHHHHHHHH
Q 015941 279 FLRNSQQFQ--ALRTMVQANPQILQELGKQNPHLMRLIQE 316 (398)
Q Consensus 279 ~Lr~~P~f~--~lrq~vq~nP~lLqqi~~~nP~L~q~I~~ 316 (398)
.+++||++. -|.++-++||++++.|.++.-+|+++|++
T Consensus 19 ~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 19 IIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcc
Confidence 344588875 67889999999999997766668888853
No 218
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.44 E-value=0.4 Score=41.27 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=47.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CcccccccCC
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~------~~QkLIf----~GK-~L~D~-------------~tL~d~gIk~ 66 (398)
..+.+.|-.-+||.++|+||-+..-++ +|. ++.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457788888999999999999876543 443 3445554 344 47663 2799999999
Q ss_pred CcEEEEEEec
Q 015941 67 NSFVVVMLTK 76 (398)
Q Consensus 67 ~s~I~v~v~k 76 (398)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887553
No 219
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=92.24 E-value=0.5 Score=46.39 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=33.6
Q ss_pred CccccCCHHHHHH-HHHH-HHcCCChhHHHHHHHHhC-------CCHHHHHHHHhccC
Q 015941 345 PQAVTVTPEEREA-IERL-EAMGFDRALVLEVFFACN-------KNEELAANYLLDHM 393 (398)
Q Consensus 345 ~~~~~lt~ee~~a-i~rl-~~lGf~~~~~~~a~~ac~-------~ne~~A~~~L~~~~ 393 (398)
|..+.++.+.... +.-| ..+||+++++..++..|= .+-.--.+||...+
T Consensus 138 P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 138 PEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp GGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred chhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 4467788887655 4555 478999999999998883 33444555665544
No 220
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.10 E-value=0.83 Score=36.40 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.0
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCcccccccC
Q 015941 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (398)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~dLK~~I~~~~g~--~~i------p~~~QkLIf~GK~L~D~~tL~d~gIk 65 (398)
|+|+||... | ....+++....||.+|.+.+...... ..+ ......+..+|+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888652 3 46678887788999999999877420 000 0134556778887753 55688
Q ss_pred CCcEEEEE
Q 015941 66 ENSFVVVM 73 (398)
Q Consensus 66 ~~s~I~v~ 73 (398)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 221
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.04 E-value=0.21 Score=37.48 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 356 EAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 356 ~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
+.|+.|.+. |....+|.+|+..||+|.+.|..||-+.
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 447788775 9999999999999999999999999654
No 222
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=91.95 E-value=0.24 Score=37.16 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 015941 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (398)
Q Consensus 174 ~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~ 211 (398)
..|..|.++ | ....+|..||..+-+|.+.|++||-
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 679999996 8 9999999999999999999999996
No 223
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=91.60 E-value=0.25 Score=35.14 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHc--CCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 355 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 355 ~~ai~rl~~l--Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
.+.++.|.+| .-++.++..+|.+|++|.+.|.+.|++..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4668999999 56999999999999999999999999763
No 224
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.67 E-value=0.67 Score=34.96 Aligned_cols=65 Identities=6% Similarity=0.184 Sum_probs=44.2
Q ss_pred CEEEEEeCCCcE-EEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGTH-FEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~-~~ieV~~~~TV~dLK~~I~~~~g~~~ip~--~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
|+|+||....-. -.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-|++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 889999774311 34666 56799999999976533 221 44566678887543 24568899999887
No 225
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.33 E-value=0.62 Score=45.75 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=54.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCcccccccCCCcEEEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~-~ip~~~QkLIf------~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
.+.|... +.+.++.++++.||.++..+|.++.... ..+.++--|.. +|+=|+++++|..|++++++.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455544 6778899999999999999998886520 12455556655 45668889999999999999887663
No 226
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=90.11 E-value=0.42 Score=36.49 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=27.3
Q ss_pred hHHhhccHHHHHHHHHHHhChHHHHHHhhhCHHHHHHHH
Q 015941 277 LDFLRNSQQFQALRTMVQANPQILQELGKQNPHLMRLIQ 315 (398)
Q Consensus 277 l~~Lr~~P~f~~lrq~vq~nP~lLqqi~~~nP~L~q~I~ 315 (398)
+..+.++|.+.++-+-+++||..++... +||.++..|+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~-~nP~v~~~i~ 59 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHM-KNPEVFKKIQ 59 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHH-hCHHHHHHHH
Confidence 4456677777777777888888886653 4788887764
No 227
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.05 E-value=1.8 Score=36.70 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=46.8
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccC
Q 015941 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVA 65 (398)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLIf----~GK-~L~D~-------------~tL~d~gIk 65 (398)
+..+.+.|-..+||..+|+||-+..-+. +| ++++.|-| .|+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4457788888999999999999775332 33 34566765 244 37652 368899999
Q ss_pred CCcEEEEEEe
Q 015941 66 ENSFVVVMLT 75 (398)
Q Consensus 66 ~~s~I~v~v~ 75 (398)
+|.+|.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 228
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=87.87 E-value=0.95 Score=35.54 Aligned_cols=46 Identities=9% Similarity=0.257 Sum_probs=39.0
Q ss_pred cccCCHHHHHH----HHHHHH-cC--CChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 347 AVTVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 347 ~~~lt~ee~~a----i~rl~~-lG--f~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
..+|++.|+.. +++|.+ +| .++...++|-+.||-|.+.|.+++|+.
T Consensus 23 ~~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 23 NHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 34688888877 566666 47 799999999999999999999999954
No 229
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=87.66 E-value=1.4 Score=36.90 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCeEEEe-CC---e-ecCCC-------------CcccccccCCC
Q 015941 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH-QG---K-VLKDV-------------TTLEENKVAEN 67 (398)
Q Consensus 12 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~------~~QkLIf-~G---K-~L~D~-------------~tL~d~gIk~~ 67 (398)
.+.+.|-.-+||..+|+||-+..-+. +|. +.+.|-| .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 47777878999999999998765332 443 3455655 23 3 46551 26889999999
Q ss_pred cEEEEEEe
Q 015941 68 SFVVVMLT 75 (398)
Q Consensus 68 s~I~v~v~ 75 (398)
.+|.|+-+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99998754
No 230
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.50 E-value=1 Score=33.75 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHHHhccCC
Q 015941 353 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMH 394 (398)
Q Consensus 353 ee~~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~~ 394 (398)
.+.+.|.+.+.+ |-++..+++.+.+|+||-+.|++.+|++..
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 343679999987 899999999999999999999999997643
No 231
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=86.85 E-value=0.75 Score=33.92 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.6
Q ss_pred hHHhhccHHHHHHHHHHHhChHHHHHHhhhCHHHHHHHH
Q 015941 277 LDFLRNSQQFQALRTMVQANPQILQELGKQNPHLMRLIQ 315 (398)
Q Consensus 277 l~~Lr~~P~f~~lrq~vq~nP~lLqqi~~~nP~L~q~I~ 315 (398)
+..+.++|.|.+.-+-+++||..++.. .+||.+.+.|+
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~-~~dP~v~~~~~ 51 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKY-QNDKEVMDVFN 51 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHH-TTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHH-HhChHHHHHHH
Confidence 556677899998888899999999765 46899988874
No 232
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.40 E-value=5.9 Score=30.46 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=40.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCC---CCCC-----CCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSD---VYPA-----SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~---~ip~-----~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
+...+++....||.+|++.+...+..- .+.. ....+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 567888887889999999998875310 0000 12566778888765 4558889999887
No 233
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.89 E-value=1.2 Score=34.95 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=37.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 015941 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (398)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G 50 (398)
++||-.-..++.|.|....+..+|..+|.++.+ ++.+..+|.|+-
T Consensus 6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 344433347899999999999999999999999 888899999964
No 234
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=85.64 E-value=0.6 Score=41.04 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=32.1
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~ 211 (398)
+...|.+|++.| -|+|++|+.||+.+-.|.++|+--|-
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 445688899999 23999999999999999999996663
No 235
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=85.59 E-value=0.35 Score=35.08 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHc--CCChhHHHHHHHHhCCCHHHHHHHHhc
Q 015941 353 EEREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLD 391 (398)
Q Consensus 353 ee~~ai~rl~~l--Gf~~~~~~~a~~ac~~ne~~A~~~L~~ 391 (398)
|-.++|+.|.+| .+|++.+.-+++++++|.+.|++.||+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 445679999999 689999999999999999999999985
No 236
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=85.22 E-value=0.85 Score=32.63 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCChhHH--HHHHHHhCCCHHHHHHHHh
Q 015941 352 PEEREAIERLEAMGFDRALV--LEVFFACNKNEELAANYLL 390 (398)
Q Consensus 352 ~ee~~ai~rl~~lGf~~~~~--~~a~~ac~~ne~~A~~~L~ 390 (398)
+.=.++|.+|.+|||+.+-- .+.+.+++.|...|.+.|-
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34457899999999976655 5999999999999998773
No 237
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.18 E-value=1.6 Score=33.35 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCHHHHHH-HHHHHHc--CCChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 350 VTPEEREA-IERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 350 lt~ee~~a-i~rl~~l--Gf~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
++..+++. |.++++| -+....+.+.+..++.|.|..+|.||++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 35555554 9999998 57899999999999999999999999874
No 238
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=84.92 E-value=1.7 Score=30.64 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHH--cCCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 352 PEEREAIERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 352 ~ee~~ai~rl~~--lGf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
|||. |++... -|=+|+..|+-+...+-|.++|+|-|++.
T Consensus 9 Pe~l--i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 9 PEEL--ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp CHHH--HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred cHHH--HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 4444 555444 49999999999999999999999999987
No 239
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=84.70 E-value=2.4 Score=33.44 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=50.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
-.++-..++..||+.++.+.| +..+...+...+..|+++++|.|-+|+-...|.+.+--
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345567789999999999999 88888888888888999999999999988888877654
No 240
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.70 E-value=1.3 Score=34.94 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=31.5
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015941 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (398)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf 48 (398)
+.||.. ++-.|.|.|..+.+..+||.+|..+.. + +.+.|++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ 54 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQT 54 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEE
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEE
Confidence 344433 466899999999999999999999977 4 5666543
No 241
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.52 E-value=3.5 Score=38.71 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=54.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe---CCe--ecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip-~~~QkLIf---~GK--~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|.|.|..++| ++.+.|+.+.|+.+|-..|+...| +. .+-.=|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688898988 788999999999999999999999 43 23334444 343 36778888888776666666666
Q ss_pred ecCC
Q 015941 75 TKSK 78 (398)
Q Consensus 75 ~k~~ 78 (398)
+++-
T Consensus 78 r~kf 81 (294)
T 1ef1_A 78 RAKF 81 (294)
T ss_dssp EESS
T ss_pred EEEE
Confidence 6543
No 242
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=83.83 E-value=1.2 Score=39.20 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCC-ChhHHHHHHHHhCCCHHHHHHHHh
Q 015941 353 EEREAIERLEAMGF-DRALVLEVFFACNKNEELAANYLL 390 (398)
Q Consensus 353 ee~~ai~rl~~lGf-~~~~~~~a~~ac~~ne~~A~~~L~ 390 (398)
.-+..++.|..+|| ++++|++|+....+|++.|...|=
T Consensus 101 ~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 101 TRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33456899999995 999999999999999999988763
No 243
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=83.69 E-value=3.8 Score=38.17 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-------Hh-cChHHHHHHHHc-CCC
Q 015941 173 EATVQQILDMGGGSWDRETVIRALRA-------AY-NNPERAVEYLYS-GIP 215 (398)
Q Consensus 173 e~~I~~i~~MG~~~f~r~qv~~ALrA-------af-nNPdRAvEYL~~-GIP 215 (398)
..+|+.|.+|| ++..++.+..+. .. .|...-++||.. |++
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~ 54 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIE 54 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCC
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCC
Confidence 47899999999 999999887555 22 256667888864 454
No 244
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.54 E-value=1.3 Score=36.79 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=42.6
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCCcc---
Q 015941 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTTL--- 59 (398)
Q Consensus 1 MkI~VKtl~------g--~~~~ieV~~---~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~-GK------~L~D~~tL--- 59 (398)
|+|+|+... | +.++|++.. ..||.+|...|.+.+. ..+-+|+.. |+ +|-++..+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678887552 3 356788873 3699999999987742 223333222 22 23333321
Q ss_pred --cccccCCCcEEEEEEe
Q 015941 60 --EENKVAENSFVVVMLT 75 (398)
Q Consensus 60 --~d~gIk~~s~I~v~v~ 75 (398)
-++-|++||.|.++-.
T Consensus 87 ~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIST 104 (114)
T ss_dssp CTTTCBCCSSEEEEEEEC
T ss_pred CCcCcCCCCCCEEEEeCC
Confidence 3567999999888643
No 245
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=83.51 E-value=4.1 Score=38.75 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=54.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCeEEEe--CCe--ecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip-~~~QkLIf--~GK--~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
+.|.|..++| ++.+.|+.+.|+.+|=..|+...| +. .+-.=|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 43 23334444 443 377788898887766666666665
Q ss_pred cC
Q 015941 76 KS 77 (398)
Q Consensus 76 k~ 77 (398)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 53
No 246
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=82.59 E-value=1.7 Score=34.26 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 8 l~g~~~~ieV~~~-~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|.++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 35664 445665 8999998875 4 556677788999998543 34456689999998874
No 247
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=82.51 E-value=1.1 Score=31.18 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHc-CCCh-hHHHHHHHHhCCCHHHHHHHHh
Q 015941 355 REAIERLEAM-GFDR-ALVLEVFFACNKNEELAANYLL 390 (398)
Q Consensus 355 ~~ai~rl~~l-Gf~~-~~~~~a~~ac~~ne~~A~~~L~ 390 (398)
.+.|.+++++ |.+. ++|++-+.+|+||-+.|++-.|
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 4568999998 9876 9999999999999999987543
No 248
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.92 E-value=4 Score=34.50 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCcccccccCCCcEEEEEE
Q 015941 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (398)
Q Consensus 20 ~~TV~dLK~~I~~~~g~~~ip~~~QkLIf--~GK~L-----~D--~~tL~d~gIk~~s~I~v~v 74 (398)
..|+.+|-+.|..++| +. +...++- ..+.| +| +++|+++||+.|++|.|+-
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999888988888 54 3454442 33454 23 5799999999999998874
No 249
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=80.68 E-value=5.4 Score=31.02 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=43.8
Q ss_pred CEEEEEeC------CCcEEEEEeCCCCCHHHHHHHHHHHhCCC--CC-C-------CCCeEEEeCCeecCCCCccccccc
Q 015941 1 MKVFVKTL------KGTHFEIEVKPEDKVSDVKKNIETVQGSD--VY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (398)
Q Consensus 1 MkI~VKtl------~g~~~~ieV~~~~TV~dLK~~I~~~~g~~--~i-p-------~~~QkLIf~GK~L~D~~tL~d~gI 64 (398)
|+|+||.. .|+...++++ ..||.+|+..+..++..- .+ . .....+..+|+...+..- .+.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 78888854 2333346654 579999999998875310 00 0 013456668877654222 24568
Q ss_pred CCCcEEEEEE
Q 015941 65 AENSFVVVML 74 (398)
Q Consensus 65 k~~s~I~v~v 74 (398)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 250
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=79.90 E-value=1.3 Score=32.67 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 015941 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAY 200 (398)
Q Consensus 169 g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAaf 200 (398)
+...++.|.-|+.+| |.+.++.+|++...
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v~ 42 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDLL 42 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 445678999999999 99999999999863
No 251
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=79.63 E-value=3.6 Score=30.25 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=40.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788998778876 456678899999888743322 1112223588876554 4456778777764
No 252
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=79.04 E-value=2 Score=30.74 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHcCCCCCCHHH--HHHHHHHHhcChHHHHHHH
Q 015941 170 SNLEATVQQILDMGGGSWDRET--VIRALRAAYNNPERAVEYL 210 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~q--v~~ALrAafnNPdRAvEYL 210 (398)
+..+++|..|++|| |+-+- ..+.|.+.-.|-.+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 44789999999999 96554 4689999999999999987
No 253
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=78.98 E-value=2.7 Score=40.82 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=28.8
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHH----HHHhcChHHHHHHHHc
Q 015941 171 NLEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLYS 212 (398)
Q Consensus 171 ~~e~~I~~i~~MG~~~f~r~qv~~AL----rAafnNPdRAvEYL~~ 212 (398)
+.+.+|..|.++| +++++++++- ..+-.|||.-++||..
T Consensus 18 ~~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~ 60 (343)
T 3mva_O 18 KNEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLS 60 (343)
T ss_dssp --CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHH
Confidence 3457899999999 9999887652 1234589999999963
No 254
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=78.65 E-value=2.7 Score=32.27 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=43.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~dLK~~I~~~~g~~~ip-~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+| +|+.+. +. ...||.+|.+.+ + ++ ....-+.++|.++.. ....++-|++||.|-++-
T Consensus 1 M~I~v---NGe~~e--~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPST--VDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEE--CSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEE--cCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 66655 577554 45 567999988754 5 66 666778899999854 345666789999998874
No 255
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=78.11 E-value=3.1 Score=31.50 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=43.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+| +|+.+. + ...||.+|.+. .+ +++...-+.++|.++.. ....+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEc
Confidence 55655 576554 4 56899998764 45 77777788899998853 235556789999998874
No 256
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=77.85 E-value=3.1 Score=30.48 Aligned_cols=61 Identities=7% Similarity=0.202 Sum_probs=42.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55544 56654 556778999999876 4 556667778899888532 22344588999988773
No 257
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=77.28 E-value=0.74 Score=38.00 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=41.7
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCC--e------ecCCCCcc--
Q 015941 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLI-HQG--K------VLKDVTTL-- 59 (398)
Q Consensus 1 MkI~VKtl~------g~~~~ieV~~----~~TV~dLK~~I~~~~g~~~ip~~~QkLI-f~G--K------~L~D~~tL-- 59 (398)
|+|+||... |+...+++.. ..||.+|-..|.+.+. ..+-+|+ -+| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677777553 4555677763 2499999888877643 2333333 123 1 34444433
Q ss_pred ---cccccCCCcEEEEEE
Q 015941 60 ---EENKVAENSFVVVML 74 (398)
Q Consensus 60 ---~d~gIk~~s~I~v~v 74 (398)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987754
No 258
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.22 E-value=6 Score=41.47 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=55.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CC--eecCCCCcccccccCCCcEEEEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QG--KVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf---~G--K~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|.|.|..++| ++.|.|+++.|+.+|=..|+...|. ...+-.=|.| +| ..|+.+++|.+.+++.+..+.+..+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL--~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGL--REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCC--CCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4578888888 7889999999999999999999993 2233445544 22 3467788888887777776666666
Q ss_pred cCC
Q 015941 76 KSK 78 (398)
Q Consensus 76 k~~ 78 (398)
++-
T Consensus 82 vkf 84 (575)
T 2i1j_A 82 AKF 84 (575)
T ss_dssp ESS
T ss_pred EEE
Confidence 544
No 259
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=77.06 E-value=1.5 Score=40.30 Aligned_cols=23 Identities=13% Similarity=0.514 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015941 173 EATVQQILDMGGGSWDRETVIRALRA 198 (398)
Q Consensus 173 e~~I~~i~~MG~~~f~r~qv~~ALrA 198 (398)
+..|+++++|| |+|+.|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999964
No 260
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.48 E-value=3.7 Score=32.62 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=25.7
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 015941 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (398)
Q Consensus 1 MkI~VKtl------~-g-~~~~ieV~--~~~TV~dLK~~I~~~~g 35 (398)
|+|+||.. . | +..++++. ...||.+|...+.+++.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 57888744 2 2 45667776 67899999999988853
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=76.09 E-value=4 Score=34.45 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=40.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHh----CCCCCCC----CCeEEEe-C---CeecCC----------C----Cccccccc
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPA----SQQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~----g~~~ip~----~~QkLIf-~---GK~L~D----------~----~tL~d~gI 64 (398)
..+.+.|-..+||..+|+||-+.. | +|. +++.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 357788888999999999997643 5 443 3444544 1 234433 1 25778999
Q ss_pred CCCcEEEEE
Q 015941 65 AENSFVVVM 73 (398)
Q Consensus 65 k~~s~I~v~ 73 (398)
.+|.+|.++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999776
No 262
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=75.87 E-value=7.2 Score=41.19 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCeEEEe----CCe-ecCCC-------------CcccccccCCC
Q 015941 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAEN 67 (398)
Q Consensus 12 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~------~~QkLIf----~GK-~L~D~-------------~tL~d~gIk~~ 67 (398)
.+.+.|-..+||..+|+||-+..-++ +|. ++..|-| .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788888999999999999654222 333 4455554 233 46653 27899999999
Q ss_pred cEEEEEEe
Q 015941 68 SFVVVMLT 75 (398)
Q Consensus 68 s~I~v~v~ 75 (398)
.+|.++-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99987654
No 263
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=74.70 E-value=9.7 Score=37.09 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=51.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCcccccccCCCcEEEE
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G---------K~L~D~~tL~d~gIk~~s~I~v 72 (398)
.+.|..++|....+.|+.+.|+.+|-..|+.+.|. ...+..-|.+.. +-|+-+++|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57888999999999999999999999999999983 234455665532 2355567777776655555555
Q ss_pred EE
Q 015941 73 ML 74 (398)
Q Consensus 73 ~v 74 (398)
.+
T Consensus 165 rv 166 (371)
T 3ivf_A 165 RR 166 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 264
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=73.75 E-value=11 Score=29.90 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=34.9
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCC
Q 015941 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQG 50 (398)
Q Consensus 3 I~VKt-l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-~QkLIf~G 50 (398)
|+||. .+|..+.+.|+++.+..+|..+|.+.++ +... ...|-|..
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEEC
Confidence 44543 3578889999999999999999999988 5544 46777764
No 265
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=73.17 E-value=14 Score=29.27 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=41.3
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC-CCC----Ce-------EEEeCCeecCCCCcc
Q 015941 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY-PAS----QQ-------MLIHQGKVLKDVTTL 59 (398)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~dLK~~I~~~~g~--~~i-p~~----~Q-------kLIf~GK~L~D~~tL 59 (398)
|+|+||... | +.+.++ ..||.+|...+...+.. ..+ ... .. .+..+|+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 788888653 3 344444 57999999999877421 001 001 12 5667777663221 1
Q ss_pred cccccCCCcEEEEE
Q 015941 60 EENKVAENSFVVVM 73 (398)
Q Consensus 60 ~d~gIk~~s~I~v~ 73 (398)
.+.-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 24468899998876
No 266
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.11 E-value=10 Score=30.63 Aligned_cols=71 Identities=18% Similarity=0.091 Sum_probs=48.7
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCccccc----ccCCCcEEEE
Q 015941 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEEN----KVAENSFVVV 72 (398)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI------f~GK~L~D~~tL~d~----gIk~~s~I~v 72 (398)
|+|-..+|....|.|+..+|+.++-+++..+.++. ....--|+ +--+.|+|...|-+. .+.....|++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45566789999999999999999999999998842 12222332 123778997765444 4555666665
Q ss_pred EEe
Q 015941 73 MLT 75 (398)
Q Consensus 73 ~v~ 75 (398)
.-+
T Consensus 90 ~kr 92 (100)
T 1wgr_A 90 RKN 92 (100)
T ss_dssp CSC
T ss_pred ecc
Confidence 443
No 267
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=72.75 E-value=12 Score=39.46 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=45.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccCC
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip------~~~QkLIf----~GK-~L~D~-------------~tL~d~gIk~ 66 (398)
..+.+.|-..+||..+|+||-+..-++ +| +++.-|-| .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788888999999999999765322 33 34555654 233 46552 2688999999
Q ss_pred CcEEEEEEec
Q 015941 67 NSFVVVMLTK 76 (398)
Q Consensus 67 ~s~I~v~v~k 76 (398)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 268
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=71.54 E-value=11 Score=35.58 Aligned_cols=71 Identities=14% Similarity=0.001 Sum_probs=49.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CC--eecCCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QG--KVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf---~G--K~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
|.+.|..++|....+.|+...|+.+|=..|+.+.|. ...+-.-|.| +| .-|+.++.|.+......-.+.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 568899999999999999999999999999999993 2233345544 23 33677788877643333344443
No 269
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=70.44 E-value=17 Score=27.03 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 12 HFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 12 ~~~ieV~~~~TV~dLK~~I~~~~g~--~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
.+.++ ....||.+|++.+...... ..+......+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45555 5667999999998754210 0011234567789988753 4468899999887
No 270
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=70.40 E-value=3.5 Score=33.30 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=40.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----Cee--------cCC------CCcccccccCCCcEEEEE
Q 015941 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----GKV--------LKD------VTTLEENKVAENSFVVVM 73 (398)
Q Consensus 12 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~----GK~--------L~D------~~tL~d~gIk~~s~I~v~ 73 (398)
...|+|+++.|+.+|-+.|.+.-. +....=-|-+. ||. |+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 356899999999999999988533 22222223222 332 321 577999999999998874
No 271
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=70.07 E-value=7.1 Score=29.00 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q--kLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999998877421 1233 677899988753 568899998876
No 272
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=68.90 E-value=6.9 Score=28.40 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 8 l~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4677654 4 568999998876 4 555666777899888543 23445689999998873
No 273
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=67.98 E-value=18 Score=34.81 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=44.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCcccccccCCC-cEEEEE
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKVAEN-SFVVVM 73 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G-K~L~D-~~tL~d~gIk~~-s~I~v~ 73 (398)
....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ ......|.-... .-|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 384 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEE
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEE
Confidence 4467788899999999999999999 999999999998 45444 445555544332 334443
No 274
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=64.99 E-value=9.1 Score=31.06 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHHHHcCCChhHHHHHHHHhCCCHHHHHHHH
Q 015941 349 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 389 (398)
Q Consensus 349 ~lt~ee~~ai~rl~~lGf~~~~~~~a~~ac~~ne~~A~~~L 389 (398)
.+++||.+.|- ...|-+|..+++||..|++|.=-|.-+|
T Consensus 63 ~i~~edi~lv~--~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVM--NQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHH--HHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHH--HHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 46677655442 2369999999999999999998887766
No 275
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=64.96 E-value=13 Score=29.12 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=33.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
+..-+.+|-+.=|.+.++.+.+.|.-.+-+|++||+.|+++.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 444566777743467999999998888899999999999964
No 276
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=62.89 E-value=3.8 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=26.0
Q ss_pred HhhccHHHHHHHHHHHhChHHHHH-HhhhCHHHHHHHH
Q 015941 279 FLRNSQQFQALRTMVQANPQILQE-LGKQNPHLMRLIQ 315 (398)
Q Consensus 279 ~Lr~~P~f~~lrq~vq~nP~lLqq-i~~~nP~L~q~I~ 315 (398)
.+..+|.|.++-+-|++||+.+++ . .+||.+.+.|.
T Consensus 27 ~~~~DP~~~~~lq~i~~NP~~i~~~~-~~dPrv~~~l~ 63 (71)
T 2llv_A 27 EMMKDPQLVAKLIGYKQNPQAIGQDL-FTDPRLMTIMA 63 (71)
T ss_dssp HHHHSCTHHHHHHHHHHSCTTHHHHT-TTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHH-hhCcHHHHHHH
Confidence 344567777777888888888855 5 36888887764
No 277
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=61.09 E-value=6.3 Score=33.24 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=28.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI 47 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI 47 (398)
.+.|-.+.||.+||..|++..| +++++|||-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW 89 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLW 89 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEE
Confidence 5678889999999999999999 999999984
No 278
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.33 E-value=14 Score=28.43 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=32.0
Q ss_pred HHHHHHHc-CC-ChhHHHHHHHHhCCCHHHHHHHHhccC
Q 015941 357 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDHM 393 (398)
Q Consensus 357 ai~rl~~l-Gf-~~~~~~~a~~ac~~ne~~A~~~L~~~~ 393 (398)
-+++|+++ |. |-...-+||-+.++|...|+.||-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 48899998 87 677777899999999999999998753
No 279
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=58.15 E-value=4.3 Score=29.30 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
.+.++.|+.|.+|= -.++|+=++..|++--.|-|-||+.||.
T Consensus 10 ~e~~~~~~~L~~MF-P~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMF-PDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHS-TTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHc-ccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45788999999992 1189999999999999999999999873
No 280
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=58.01 E-value=11 Score=30.66 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 015941 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (398)
Q Consensus 173 e~~I~~i~~-MG~~~f~r~qv~~ALrAafnNPdRAvEYL~ 211 (398)
++.|.-+|+ +| -.|++.++||+.+-++.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 467888888 79 9999999999999999999999883
No 281
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=57.30 E-value=13 Score=27.29 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHh
Q 015941 353 EEREAIERLEAMGFDRALVLEVFFAC 378 (398)
Q Consensus 353 ee~~ai~rl~~lGf~~~~~~~a~~ac 378 (398)
...+++.-|..|||++.++.+|.-.+
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34579999999999999999998776
No 282
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=57.06 E-value=12 Score=33.91 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 174 ~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
..|.+|-++ | ..=-+|..||..+-+|-|.|+|||--
T Consensus 5 ~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 5 ELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578889887 7 88889999999999999999999963
No 283
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.56 E-value=2.3 Score=35.79 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.4
Q ss_pred HHHHHHHc-CC-ChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 357 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 357 ai~rl~~l-Gf-~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
-|++|+|+ |. |-...-+||-||++|.+.|+.||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 38889998 87 57778899999999999999999765
No 284
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=56.06 E-value=34 Score=25.80 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=36.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCC--C--CCC----CCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGS--D--VYP----ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~--~--~ip----~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
.++++...||.+|.+.+...... . .+. .....+..+|+..... .-.+.-|++||.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEe
Confidence 34566568999999999877310 0 000 1345677788877522 1234468999998886
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.84 E-value=12 Score=40.06 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=40.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCCCCccccc
Q 015941 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKDVTTLEEN 62 (398)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G-K~L~D~~tL~d~ 62 (398)
.+...+.+.++.|+.+||..|+..+| ++.+.|.|++.+ ..|........|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 44567888999999999999999999 999999999865 445555566665
No 286
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.94 E-value=45 Score=27.05 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=46.0
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCcccccccCCCcEEEEEEe
Q 015941 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI---f~GK~--L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
|-..+..-+++.+..+.|+.+|+..+.++.+ +..+.++|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4444666778888889999999999999998 655578775 67744 45544322223444567776654
No 287
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=54.23 E-value=13 Score=35.69 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 174 ~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
.+|.+|-++ | +.=-+|..||..+-+|-|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578888887 8 88899999999999999999999983
No 288
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.82 E-value=17 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHHHHHhChHHHHHHhhhCHHHHHHH
Q 015941 286 FQALRTMVQANPQILQELGKQNPHLMRLI 314 (398)
Q Consensus 286 f~~lrq~vq~nP~lLqqi~~~nP~L~q~I 314 (398)
+.+|++++..||+....|-.+||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHCchHHHHH
Confidence 45999999999999988889999998765
No 289
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=53.79 E-value=10 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=22.7
Q ss_pred hHHhhccHHHHHHHHHHHhChHHH---HHHhhhCHHHHHHHHHCHH
Q 015941 277 LDFLRNSQQFQALRTMVQANPQIL---QELGKQNPHLMRLIQEHQT 319 (398)
Q Consensus 277 l~~Lr~~P~f~~lrq~vq~nP~lL---qqi~~~nP~L~q~I~~n~e 319 (398)
++-|.++|.+..+ .+||++. ++| ++||+-++-+..||.
T Consensus 5 ~~kl~~dPe~~~~----m~dP~~~~~lq~i-~~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVAMA----FQNPRVQAALMEC-SENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHHHH----TTSHHHHHHHHHH-TTCGGGHHHHTTCHH
T ss_pred HHHHHcChHHHHH----cCCHHHHHHHHHH-HHCHHHHHHHHhChH
Confidence 4556667766433 3567776 555 446776666666665
No 290
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=53.50 E-value=25 Score=28.29 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 015941 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (398)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~~I~~~~g 35 (398)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999987
No 291
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=52.04 E-value=84 Score=25.35 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=53.0
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCcccccccCCCcEEEEEEe
Q 015941 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 2 kI~VKtl~g---~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~G---K~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
+|+|..++. ..+++.|..+.-|+-|.-+|-++.... -.-.+--|-+.- ..|+-..+|..|||..+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 678887654 568899998899999999998776511 123344444322 3467788999999999999988743
No 292
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=49.65 E-value=91 Score=24.34 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=44.2
Q ss_pred CEEEEEeCCCcEEEEEe-CCCCCHHHHHHHHHHHhCCC-CCCCCC-e---EEEe-CCeecCCCCcccccccCCCcEEEEE
Q 015941 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNIETVQGSD-VYPASQ-Q---MLIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV-~~~~TV~dLK~~I~~~~g~~-~ip~~~-Q---kLIf-~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
|||+|+.- +..+.|=. +...||..|-++--.++-+. ...++. . +|-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 89999964 55566655 34569999877655544210 011222 2 2223 77899888888886 5677777655
Q ss_pred E
Q 015941 74 L 74 (398)
Q Consensus 74 v 74 (398)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 293
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.68 E-value=6.2 Score=29.81 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=34.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
.+++....||.+|.+.+ + ++.....+..+|+.+..+ .-|++||.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666678999998765 4 556666788899998765 457888877655
No 294
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=45.99 E-value=42 Score=22.33 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=32.0
Q ss_pred hHHHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 015941 172 LEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (398)
Q Consensus 172 ~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~ 211 (398)
.+..|.+.++. | -+++.++.-|.++-+|-++||....
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999996 6 6999999999999999999997544
No 295
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=45.95 E-value=55 Score=33.69 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCcccccccCCCcEEEE
Q 015941 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (398)
Q Consensus 12 ~~~ieV~~~~TV~dLK~~I~~~~g~~~ip---~~~QkL--If~GK~---L~D~~tL~d~gIk~~s~I~v 72 (398)
.+.|-|..+.||.||-..+..+.+ ++ ....|| +|+||+ +.++.+|..+.=....+|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466777889999999999998887 54 466777 588875 57777887653221444443
No 296
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=44.78 E-value=49 Score=25.82 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=48.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCC--CCCCeEEEeCCee--cCCCCcccccccCCCcEEEEEE
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVY--PASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~-g~~~i--p~~~QkLIf~GK~--L~D~~tL~d~gIk~~s~I~v~v 74 (398)
.-+.|+..+|+.++-++++... |.. + .+.-.+.-++|+. |.++.++.+-||+.-+.|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4568999999999999998653 422 2 1235677889988 9999999999999999998875
No 297
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=44.17 E-value=55 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.5
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhC
Q 015941 2 KVFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQG 35 (398)
Q Consensus 2 kI~VKtl~g~~-~~ieV~-~~~TV~dLK~~I~~~~g 35 (398)
.|+.|....+. ..|.++ ...+|.+||..|..+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 35667666554 456777 56899999999999887
No 298
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=43.30 E-value=76 Score=24.88 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeec-CCCCccccc--ccCCCcEEEEEEec
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf-~GK~L-~D~~tL~d~--gIk~~s~I~v~v~k 76 (398)
.+-|..+.||..|...|..+.. +.+++--.+| +...+ ..+.+++++ .-+++.+|+|.-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4667889999999999999988 6666544444 66554 446676655 23467788877653
No 299
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=42.43 E-value=58 Score=24.73 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
+|+|.+.+|..+ ++....|+.|+=..|....+.. -.--..+|+...-+ +-+++|+.|.++-.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~-----~v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR-----MIGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT-----EEEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc-----eEEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 578888999765 4567789999988887665521 12223477776543 45788898888754
No 300
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=41.92 E-value=39 Score=32.27 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=38.4
Q ss_pred ccccCCHHHHHHHHHHHHc----C----CChhHHHHHHHHhCCCHHHHHHHHh
Q 015941 346 QAVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 390 (398)
Q Consensus 346 ~~~~lt~ee~~ai~rl~~l----G----f~~~~~~~a~~ac~~ne~~A~~~L~ 390 (398)
..-.||++++++|++|.++ | .|....++=+.||++|.+.|...|-
T Consensus 31 ~~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 31 TPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3568999999999988865 4 5778889999999999999998874
No 301
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=39.56 E-value=59 Score=23.63 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=38.6
Q ss_pred ccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 166 l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
+-..+.++.+|+.+.+|=- -++++++..-|+-. +|.+.-+|=++.|
T Consensus 11 ~~~~sql~~Mve~V~~mFP-qv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 11 LYFQGQLNAMAHQIQEMFP-QVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 3445678899999999921 17999999999998 9999999999988
No 302
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=39.46 E-value=49 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred hHHhhccHHHHHHHHHHHhChHHH---HHHhhhCHHHHHHHHHCHH
Q 015941 277 LDFLRNSQQFQALRTMVQANPQIL---QELGKQNPHLMRLIQEHQT 319 (398)
Q Consensus 277 l~~Lr~~P~f~~lrq~vq~nP~lL---qqi~~~nP~L~q~I~~n~e 319 (398)
+..+.+.|.++.+ .+||++. ++| .+||..++-...||.
T Consensus 13 ~~~~m~dPEi~~i----m~DP~~~~~lq~~-~~NP~~~~k~~~nP~ 53 (71)
T 2llw_A 13 YQRAMKDPEVAAI----MQDPVMQSILQQA-QQNPAALQEHMKNPE 53 (71)
T ss_dssp HHHHHHSHHHHHH----HTCTHHHHHHHHH-HHCHHHHHHHHHSHH
T ss_pred HHHHhcCHHHHHH----hCCHHHHHHHHHH-HHCHHHHHHHHhCHH
Confidence 3445556655432 3677766 444 346666666666664
No 303
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=38.53 E-value=36 Score=27.12 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015941 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (398)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~v 74 (398)
+.+.+++....||.++-+...-......+.....++-.+|++... +.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 456778889999999988775432211144556778788888873 44578899998874
No 304
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=37.67 E-value=1.1e+02 Score=25.41 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=46.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHH-hCCC----CCCCCCeEEEeCCeecC--CCCcccccccCCCcEEEEE
Q 015941 13 FEIEVKPEDKVSDVKKNIETV-QGSD----VYPASQQMLIHQGKVLK--DVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~-~g~~----~ip~~~QkLIf~GK~L~--D~~tL~d~gIk~~s~I~v~ 73 (398)
+.+-|.+..+..+|-+.+-.. ++.+ .|.-++-....+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999988776543 3311 13444557788999984 4789999999999998776
No 305
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=37.25 E-value=1.4e+02 Score=23.11 Aligned_cols=62 Identities=6% Similarity=0.073 Sum_probs=48.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCCC--CC-CeEEEeCC--eecCCCCcccccccCCCcEEEEEEe
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--AS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~-g~~~ip--~~-~QkLIf~G--K~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
.-+.|+..+|+.++-++++-.. |.. +. +. -.+..++| +.|..+.|+.+-||+.-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4568999999999999998643 432 31 22 35667888 8999999999999999999988753
No 306
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.77 E-value=1e+02 Score=24.29 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCcEEEEEEec
Q 015941 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (398)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~~~QkLIf--~GK~L~D~~tL~d~gIk~~s~I~v~v~k 76 (398)
.+..+|+.|...+.+ ++....+|+. .|-+++|+.-+..+ ++.++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999988 7655677754 68888776554443 24555555543
No 307
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.68 E-value=18 Score=26.01 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHhCCCHHHHHHHH
Q 015941 366 FDRALVLEVFFACNKNEELAANYL 389 (398)
Q Consensus 366 f~~~~~~~a~~ac~~ne~~A~~~L 389 (398)
|.+..+.+++..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788999999999999999876
No 308
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=36.44 E-value=50 Score=33.86 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeC--C--eecCCCCcccc
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQ--G--KVLKDVTTLEE 61 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~--~~QkLIf~--G--K~L~D~~tL~d 61 (398)
|.+.|..++|....+.|+...|+.+|-..|+.+.| +.. +..-|.+. + +.|+++..+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 35788999999999999999999999999999999 542 34445432 2 22555554433
No 309
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=36.31 E-value=1.2e+02 Score=24.84 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=40.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf-~GK~L~D~~tL~d~--gI-k~~s~I~v~v~k 76 (398)
+-|..+.||.+|...|..... +.+++--++| ++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 6665544444 66545556777665 22 346688887653
No 310
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.52 E-value=28 Score=32.71 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=39.2
Q ss_pred hHHhhccHHHHHHHHHHHhChHH--H----HHHhhhCHHHHHHHHHCHHHHHHHhcC
Q 015941 277 LDFLRNSQQFQALRTMVQANPQI--L----QELGKQNPHLMRLIQEHQTDFLRLINE 327 (398)
Q Consensus 277 l~~Lr~~P~f~~lrq~vq~nP~l--L----qqi~~~nP~L~q~I~~n~e~Fl~~l~~ 327 (398)
.+||++.-...+|+++++.++.- | ..|..-+|+|+..|..||..++.++.+
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 75 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQ 75 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHH
Confidence 35777644567888888554433 2 778889999999999999999999743
No 311
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=34.37 E-value=20 Score=27.69 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHhCCCHHHHHHHH
Q 015941 367 DRALVLEVFFACNKNEELAANYL 389 (398)
Q Consensus 367 ~~~~~~~a~~ac~~ne~~A~~~L 389 (398)
.+..+.++|..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35667889999999999999876
No 312
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=34.13 E-value=93 Score=25.85 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=41.5
Q ss_pred eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCCc--ccccccCCCcEEEEE
Q 015941 7 TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGK--VLKDVTT--LEENKVAENSFVVVM 73 (398)
Q Consensus 7 tl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~------~QkLI---f~GK--~L~D~~t--L~d~gIk~~s~I~v~ 73 (398)
..+..-+++.+..+.|+.+|+..+..+.+ +..+ .++|+ ++|. +|+++.. ...++ -+..|++.
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgRLfvc 90 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSHLFAC 90 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEEEEEE
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEe
Confidence 33455567788888999999999999988 4333 67775 6774 3555443 34444 45666655
Q ss_pred E
Q 015941 74 L 74 (398)
Q Consensus 74 v 74 (398)
.
T Consensus 91 ~ 91 (120)
T 2dhz_A 91 T 91 (120)
T ss_dssp C
T ss_pred e
Confidence 3
No 313
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=33.66 E-value=62 Score=26.27 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHc----CCChhHHHHHHHHhCCCHHHHHHHHhcc
Q 015941 351 TPEEREAIERLEAM----GFDRALVLEVFFACNKNEELAANYLLDH 392 (398)
Q Consensus 351 t~ee~~ai~rl~~l----Gf~~~~~~~a~~ac~~ne~~A~~~L~~~ 392 (398)
++|--++|++|..| .-|--.|.+||+...++-+.|..||+..
T Consensus 7 ~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 7 QPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 34444556666554 5688999999999999999999999864
No 314
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.34 E-value=56 Score=23.62 Aligned_cols=40 Identities=30% Similarity=0.307 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHc-CCCCCCHHHHHHHHHHHhcChHHHHHHHHc
Q 015941 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (398)
Q Consensus 170 ~~~e~~I~~i~~M-G~~~f~r~qv~~ALrAafnNPdRAvEYL~~ 212 (398)
+..++.|++.|++ | =+++.++.-|.++-+|-++||...+.
T Consensus 13 ~~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 13 SALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3456789999996 6 78999999999999999999985553
No 315
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=33.11 E-value=1.3e+02 Score=24.80 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~-QkLIf~GK~L~D~~tL~d~--gI-k~~s~I~v~v~k 76 (398)
+-|..+.||.+|...|....+ +.+++ .-|..++....-+.+++++ .- .++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 457789999999999999988 66665 4444577766667787766 23 346688887653
No 316
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=33.03 E-value=1.6e+02 Score=23.09 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=40.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCccccc--ccCCCcEEEEEEe
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~GK~L-~D~~tL~d~--gIk~~s~I~v~v~ 75 (398)
.+-|..+.||..|...|..+.+ + +..-|..+...+ ..+.+++++ .-+++.+|+|.-+
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4668889999999999999988 5 555555577654 446676665 2346778887764
No 317
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=32.57 E-value=31 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH
Q 015941 175 TVQQILDMGGGSWDRETVIRALRAA 199 (398)
Q Consensus 175 ~I~~i~~MG~~~f~r~qv~~ALrAa 199 (398)
.|++.++|| |.+..|.++++--
T Consensus 30 vV~~alemG---f~~~~V~~~v~~k 51 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEK 51 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHH
Confidence 799999999 9999999999763
No 318
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=32.31 E-value=29 Score=31.60 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAaf 200 (398)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 468999999999 99999999999874
No 319
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=32.25 E-value=41 Score=29.53 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=37.3
Q ss_pred CcchHHHHHHH-HHcCCCCCCH---HHHHHHHHHHhcC-hHHHHHHHHcC--CCCC
Q 015941 169 GSNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 217 (398)
Q Consensus 169 g~~~e~~I~~i-~~MG~~~f~r---~qv~~ALrAafnN-PdRAvEYL~~G--IP~~ 217 (398)
-+..+..|+.| .+-| |.+ ++|+-||+..-.+ |..=++||..| ||.+
T Consensus 60 ~s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 60 PSQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TTCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 34567888888 6789 865 6788899999999 99888999998 7765
No 320
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=32.23 E-value=1.2e+02 Score=24.73 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=40.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~-QkLIf~GK~L~D~~tL~d~--gI-k~~s~I~v~v~k 76 (398)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+|+++ .. .++.+|+|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 346678899999999999988 55555 4454456545557777766 22 347789888764
No 321
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=31.84 E-value=1.1e+02 Score=25.43 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=41.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-CCeecCCCCccccc--ccC-CCcEEEEEEec
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf-~GK~L~D~~tL~d~--gIk-~~s~I~v~v~k 76 (398)
+-|..+.||.+|...|..+.. +.+++--++| ++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 457789999999999999988 6666544444 66555567777766 233 56688887654
No 322
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=31.04 E-value=99 Score=25.92 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.3
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCccccc--cc-CCCcEEEEEEe
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLT 75 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLI-f~GK~L-~D~~tL~d~--gI-k~~s~I~v~v~ 75 (398)
+-|..+.||.+|...|..+.+ +.+++--++ |-++.+ .-+.+++++ .- .++.+|+|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457788999999999999988 666665545 766555 456777766 22 24678888764
No 323
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=30.93 E-value=89 Score=33.08 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=38.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf 48 (398)
|.+.|..++|....+.|+...|+.+|-..|+.+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999984 3345566655
No 324
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=30.29 E-value=55 Score=23.25 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.4
Q ss_pred cccCCcchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcCCC
Q 015941 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (398)
Q Consensus 165 ~l~~g~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~GIP 215 (398)
.++.+..+...+.+ |+|+-+.+||+.+-+|-.+|.+.| ||.
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 34455556665553 788899999999999999999988 553
No 325
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=29.49 E-value=89 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCccccc
Q 015941 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN 62 (398)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~-------GK~L~D~~tL~d~ 62 (398)
|+|-.-+|....|.|+++.|+.+|-..+..+.+ +....-..+|. -|.|+|...+-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 455566888999999999999999988887765 33333333332 3778887665444
No 326
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.95 E-value=1.4e+02 Score=23.92 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=39.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCcEEEEEEe
Q 015941 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLT 75 (398)
Q Consensus 15 ieV~~~~TV~dLK~~I~~~~g~~~ip~~~-QkLIf~GK~L~D~~tL~d~--gI-k~~s~I~v~v~ 75 (398)
+-|..+.||.+|...|....+ +.+++ .-|+.++....-+.+|+++ .. .++.+|+|...
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 456668899999999999987 55555 4554466545557777776 22 34678887653
No 327
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.94 E-value=1.4e+02 Score=25.78 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=37.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015941 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (398)
Q Consensus 14 ~ieV~~~~TV~dLK~~I~~~~g~~~ip---------~~~QkLIf~GK~L~D~~tL~d~gIk~~s~I~v~ 73 (398)
.++++. .||.+|.+.+...+.. +. .....+..+|+...... -.+.-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 455665 8999999999877320 10 13446677888876532 234568999998887
No 328
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=28.68 E-value=76 Score=34.02 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----cCC--CCcccccccCCCcEEEEE
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--V----LKD--VTTLEENKVAENSFVVVM 73 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~--------~QkLIf~GK--~----L~D--~~tL~d~gIk~~s~I~v~ 73 (398)
..+.|+.+.|+.+|-..|+.+.... +..- ..+++|... . .++ +++|.++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577887889999988888853300 2111 246666532 1 112 678999999999998875
No 329
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=28.30 E-value=1.2e+02 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHhhhCHHHHHHHHHCHHHHHHHhcCCCCCCCCCccccccccCCccccCCHHHHHHH-----HHHHHcCCCh
Q 015941 299 ILQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDR 368 (398)
Q Consensus 299 lLqqi~~~nP~L~q~I~~n~e~Fl~~l~~~~~~~~~~~~~~~~~~~~~~~~lt~ee~~ai-----~rl~~lGf~~ 368 (398)
++++|. .|++++...++|+.++. ...||+||++|| .+|..+|-.-
T Consensus 40 f~~sL~--~~~~RerF~aDpeA~l~-----------------------~~gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 40 FAMSLM--KAENRERFKADESAYLD-----------------------EWNLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHTT--SHHHHHHHHHCHHHHHH-----------------------TTTCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHC--CHHHHHHHHhCHHHHHH-----------------------HcCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 345564 48999999999998853 235789999994 5677887543
No 330
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=28.06 E-value=57 Score=28.56 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHCHHHHHHHhcCCCCCCCCCccccc---cc--cCCccccCCHHHHHHHHHHHHcCC
Q 015941 314 IQEHQTDFLRLINEPVEGGEGNVLGQL---AS--AMPQAVTVTPEEREAIERLEAMGF 366 (398)
Q Consensus 314 I~~n~e~Fl~~l~~~~~~~~~~~~~~~---~~--~~~~~~~lt~ee~~ai~rl~~lGf 366 (398)
|-.||+.+++++..+.. ...-..|+. ++ .....+.+++||.+++++|.++|.
T Consensus 87 l~k~p~d~~~lve~Gv~-i~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~Gv 143 (168)
T 3eye_A 87 ICRTPQTVRKLVEGGID-LKDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGV 143 (168)
T ss_dssp EESSHHHHHHHHHTTCC-CCEEEECCBCCCTTCEEEETTEEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCC-CCEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHCCC
Confidence 34677788888765531 000001110 01 112368899999999999999995
No 331
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.85 E-value=45 Score=34.38 Aligned_cols=70 Identities=11% Similarity=0.239 Sum_probs=51.9
Q ss_pred EEEEeCC--CcEE----EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCccccc--ccCCC
Q 015941 3 VFVKTLK--GTHF----EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (398)
Q Consensus 3 I~VKtl~--g~~~----~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~----G--K~L~-D~~tL~d~--gIk~~ 67 (398)
|++|..+ .+++ .+-|+.+.+|.+|-..|.+..| +|++.--++|. + ..|+ .+.+|.++ .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666443 3343 3578889999999999999999 88876555553 3 3467 47899999 99999
Q ss_pred cEEEEEEe
Q 015941 68 SFVVVMLT 75 (398)
Q Consensus 68 s~I~v~v~ 75 (398)
++|++=..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 98876653
No 332
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=27.63 E-value=1.7e+02 Score=27.61 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=45.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCccccc----ccCCCcEEE
Q 015941 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEEN----KVAENSFVV 71 (398)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~QkLIf~-------GK~L~D~~tL~d~----gIk~~s~I~ 71 (398)
|.|-..+|....|.|++++|+.||-..+..+.+ +....-..+|. -|.|.|...|-+. .......|+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~---~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~ 110 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSH---CGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLI 110 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSC---CCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcC---CCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEE
Confidence 444456788899999999999999998888877 33333232321 2778887766553 444455555
Q ss_pred EE
Q 015941 72 VM 73 (398)
Q Consensus 72 v~ 73 (398)
+.
T Consensus 111 f~ 112 (281)
T 4gmv_A 111 FM 112 (281)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 333
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=27.59 E-value=70 Score=29.63 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=36.3
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChhHHHHHHHHhCCCHHHHHHHHh
Q 015941 347 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 390 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~l----G----f~~~~~~~a~~ac~~ne~~A~~~L~ 390 (398)
.-.||+++.++|++|.+. | .|....++=+.+|+.|.+.|...|-
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 446899999999888763 4 4778888999999999999998874
No 334
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=27.58 E-value=82 Score=25.35 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCC--CCeEEE--eCCeecCCCCcccccccCCCcEEEEEEe
Q 015941 21 DKVSDVKKNIETVQGSDVYPA--SQQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (398)
Q Consensus 21 ~TV~dLK~~I~~~~g~~~ip~--~~QkLI--f~GK~L~D~~tL~d~gIk~~s~I~v~v~ 75 (398)
.+..+|+.|...+.+ ++. ...+|+ ..|.+++|+.-+..+ .+ .++.|++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~-nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--CS-CCEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--CC-CCEEEEEc
Confidence 379999999999998 654 235554 479999887665543 23 44444443
No 335
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=26.43 E-value=36 Score=30.71 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 015941 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (398)
Q Consensus 172 ~e~~I~~i~~MG~~~f~r~qv~~ALrAa 199 (398)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999986
No 336
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=26.11 E-value=73 Score=27.68 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=31.4
Q ss_pred HHHCHHHHHHHhcCCCCCCCCCccccc---c--ccCCccccCCHHHHHHHHHHHHcCC
Q 015941 314 IQEHQTDFLRLINEPVEGGEGNVLGQL---A--SAMPQAVTVTPEEREAIERLEAMGF 366 (398)
Q Consensus 314 I~~n~e~Fl~~l~~~~~~~~~~~~~~~---~--~~~~~~~~lt~ee~~ai~rl~~lGf 366 (398)
|-.||+.+++++..+.. ...-..|+. + ......+.+++||.++++.|.++|.
T Consensus 85 l~k~p~d~~~lve~Gv~-i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~Gv 141 (165)
T 1vsq_C 85 LFTNPTDVERLVEGGVK-ITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGI 141 (165)
T ss_dssp EESSHHHHHHHHHTTCC-CSEEEEEECCCCTTSEECSSSCEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCC-CCEEEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHCCC
Confidence 34567788888754431 100001110 0 1123468899999999999999994
No 337
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=26.03 E-value=71 Score=23.67 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHH-cCCChhHHHHHHHHh
Q 015941 349 TVTPEEREAIERLEA-MGFDRALVLEVFFAC 378 (398)
Q Consensus 349 ~lt~ee~~ai~rl~~-lGf~~~~~~~a~~ac 378 (398)
.||+-|++.|..+.+ .||+.+.+..|+.-|
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 478899999988875 699999999999988
No 338
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.90 E-value=71 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~ 28 (398)
+|+|...+|..+.|++....||.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 789999999999999999999988553
No 339
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.57 E-value=1.7e+02 Score=21.47 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
.+.+..|++.+++-+ .=+.+.++.-|..+-+|-++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456788999999742 1278889999999999999999877665
No 340
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=24.53 E-value=2.2e+02 Score=24.27 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=43.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC----eEEEe-----------------CCeec-CCCCcccccccCCCcEE
Q 015941 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQ----QMLIH-----------------QGKVL-KDVTTLEENKVAENSFV 70 (398)
Q Consensus 13 ~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~----QkLIf-----------------~GK~L-~D~~tL~d~gIk~~s~I 70 (398)
+.|-...+.|+.+|-..|.+.... .+... .+||| .|+.- +|++||.+++..-||+|
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 566667899999999999877431 11111 23333 33332 46899999999999999
Q ss_pred EEEEecC
Q 015941 71 VVMLTKS 77 (398)
Q Consensus 71 ~v~v~k~ 77 (398)
.|-+..+
T Consensus 134 dvaI~pP 140 (143)
T 4a6q_A 134 DIAITPP 140 (143)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 9988643
No 341
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=24.39 E-value=1.4e+02 Score=23.53 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 015941 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (398)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~~Q-kLIf~GK~L 53 (398)
..++.+.|+...|=.++|+.|+..++ +.+... .|+..||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36899999999999999999999999 777766 456777653
No 342
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=24.02 E-value=72 Score=21.98 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=9.1
Q ss_pred HHHHHHHHHhChHHH
Q 015941 286 FQALRTMVQANPQIL 300 (398)
Q Consensus 286 f~~lrq~vq~nP~lL 300 (398)
=+++-.++++||+++
T Consensus 19 qqqvl~ILksnPqLM 33 (47)
T 1zoq_C 19 QQQVLNILKSNPQLM 33 (47)
T ss_dssp HHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCHHHH
Confidence 345666666666665
No 343
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.88 E-value=1.6e+02 Score=21.03 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHc-CCChhHHHHHHHHhCCCHHHHHHH
Q 015941 349 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANY 388 (398)
Q Consensus 349 ~lt~ee~~ai~rl~~l-Gf~~~~~~~a~~ac~~ne~~A~~~ 388 (398)
.|+++-..-|.+|... |-..+=+...+..|+||-+.|..-
T Consensus 2 ~ls~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4677777778888876 888999999999999999998864
No 344
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=23.69 E-value=95 Score=25.27 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=44.3
Q ss_pred EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------CeEEEe---CCee--cCC-CCcccccccCCCcEE
Q 015941 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------QQMLIH---QGKV--LKD-VTTLEENKVAENSFV 70 (398)
Q Consensus 4 ~VKtl~g~~~~ieV~~~~TV~dLK~~I~~~~g~~~ip~~-------~QkLIf---~GK~--L~D-~~tL~d~gIk~~s~I 70 (398)
.+-..+|-.+.++|..+.|+.++|..+.++-.+ +|.. .-.+.. .|.+ |.| ++.|.|+... -.++
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piL 99 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFL 99 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEE
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEE
Confidence 334458888999999999999999999987442 3221 112221 2433 755 5788888765 3455
Q ss_pred EEEEe
Q 015941 71 VVMLT 75 (398)
Q Consensus 71 ~v~v~ 75 (398)
.|+-|
T Consensus 100 klver 104 (108)
T 2v1y_A 100 KVIEP 104 (108)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 55543
No 345
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=23.54 E-value=1.5e+02 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHH-cCCChhHHHHHHHHhC-CCHHHHHH
Q 015941 349 TVTPEEREAIERLEA-MGFDRALVLEVFFACN-KNEELAAN 387 (398)
Q Consensus 349 ~lt~ee~~ai~rl~~-lGf~~~~~~~a~~ac~-~ne~~A~~ 387 (398)
.++++|++.+.++.. +|++..+..+.+..|+ -....+..
T Consensus 34 ~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~ 74 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVA 74 (133)
T ss_dssp CCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHH
Confidence 478999999998876 8999988888877775 34555554
No 346
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=23.33 E-value=58 Score=28.42 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~ 29 (398)
+|+|+ ++|+.+.+++++..||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56665 6899999999999999986554
No 347
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=23.14 E-value=85 Score=24.47 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.1
Q ss_pred cccCCHHHHHHHHHHHHcC-C-ChhHHHHHHHHhCCCHHHHH
Q 015941 347 AVTVTPEEREAIERLEAMG-F-DRALVLEVFFACNKNEELAA 386 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~lG-f-~~~~~~~a~~ac~~ne~~A~ 386 (398)
.|.|+++-.+-|+.+++-| | ++.+||+..+......+...
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l 48 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKL 48 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHH
Confidence 6889999999999999987 6 89999999888776655443
No 348
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=22.97 E-value=1.3e+02 Score=27.39 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.3
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015941 171 NLEATVQQILDMGGGSWDRETVIRALRA 198 (398)
Q Consensus 171 ~~e~~I~~i~~MG~~~f~r~qv~~ALrA 198 (398)
.....|.-+.++| |+++++.+.++.
T Consensus 40 ~l~~~l~fL~~lG---~~~~~i~~il~~ 64 (270)
T 3m66_A 40 DIKQMLLFLKDVG---IEDNQLGAFLTK 64 (270)
T ss_dssp HTHHHHHHHHHHT---CCGGGHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHh
Confidence 4667899999999 999999988864
No 349
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=22.95 E-value=57 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~ 28 (398)
|+|+|+ ++|+.+.+++++..|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 356666 789999999999999998754
No 350
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.67 E-value=25 Score=27.14 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHhCCCHHHHHHHH
Q 015941 366 FDRALVLEVFFACNKNEELAANYL 389 (398)
Q Consensus 366 f~~~~~~~a~~ac~~ne~~A~~~L 389 (398)
|.+..+.++|..|++|...||..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356778899999999999999876
No 351
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=22.19 E-value=95 Score=26.93 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=31.3
Q ss_pred HHHCHHHHHHHhcCCCCCCCCCcccccc---c--cCCccccCCHHHHHHHHHHHHcCC
Q 015941 314 IQEHQTDFLRLINEPVEGGEGNVLGQLA---S--AMPQAVTVTPEEREAIERLEAMGF 366 (398)
Q Consensus 314 I~~n~e~Fl~~l~~~~~~~~~~~~~~~~---~--~~~~~~~lt~ee~~ai~rl~~lGf 366 (398)
|-.||+.+++++..+.. ...-..|+.. + .....+.+++||.+++++|.++|.
T Consensus 82 l~k~p~d~~~lve~Gv~-i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~Gv 138 (164)
T 1nrz_A 82 LFTNPHDVLTMVRQGVQ-IATLNIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKLGV 138 (164)
T ss_dssp EESSHHHHHHHHTTTCC-CSEEEEEEBCCCTTCEEEETTEEECHHHHHHHHHHHHTTC
T ss_pred EECCHHHHHHHHHcCCC-CCEEEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHCCC
Confidence 34567788888755431 1000011110 0 112368899999999999999994
No 352
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=21.96 E-value=1e+02 Score=26.73 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHCHHHHHHHhcCCCCCCCCCccccc---c--ccCCccccCCHHHHHHHHHHHH-cCC
Q 015941 314 IQEHQTDFLRLINEPVEGGEGNVLGQL---A--SAMPQAVTVTPEEREAIERLEA-MGF 366 (398)
Q Consensus 314 I~~n~e~Fl~~l~~~~~~~~~~~~~~~---~--~~~~~~~~lt~ee~~ai~rl~~-lGf 366 (398)
|-.||+.+++++..+.. ...-..|+. + ......+.+++||.+++++|.+ +|.
T Consensus 84 l~k~p~d~~~lv~~g~~-i~~vNvG~m~~~~g~~~i~~~v~v~~ed~~~lk~L~~~~Gv 141 (163)
T 3p3v_A 84 VVKDLQDAKLLVEGGVP-ITEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHV 141 (163)
T ss_dssp EESSHHHHHHHHHTTCC-CCEEEEEEBCCCTTSEESSSSBEECHHHHHHHHHHHHTSCC
T ss_pred EECCHHHHHHHHHcCCC-CCEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHhcCC
Confidence 34677788888765531 000001110 0 1123468999999999999999 895
No 353
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=21.93 E-value=62 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015941 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (398)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~~ 29 (398)
|.|+|+ ++|+.+.++|++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 6899999999999999887654
No 354
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.63 E-value=1.8e+02 Score=20.02 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHH-HHHHHHcCCChhHHHHHHHHhCCCHH
Q 015941 352 PEEREA-IERLEAMGFDRALVLEVFFACNKNEE 383 (398)
Q Consensus 352 ~ee~~a-i~rl~~lGf~~~~~~~a~~ac~~ne~ 383 (398)
.|.++. |.||+.||.+-+.+..-|..--.=|.
T Consensus 4 DEvkDmEiAkLMSLGl~id~A~~~Ye~gi~ye~ 36 (47)
T 1pgy_A 4 DEVKDMEIARLMSLGLSIEEATEFYENDVTYER 36 (47)
T ss_dssp HHHHHHHHHHHHHHCCCSHHHHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHccCChhhHHHHHHcCchHHH
Confidence 455555 99999999999999888876544443
No 355
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.43 E-value=2.5e+02 Score=20.47 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHcCCCCCCHHHHHHHHHHHhcChHHHHHHHHcC
Q 015941 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (398)
Q Consensus 170 ~~~e~~I~~i~~MG~~~f~r~qv~~ALrAafnNPdRAvEYL~~G 213 (398)
++++.+|+.+.+|= =-++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 11 ~ql~~mv~~V~~mf-P~vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVL-PHVPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHC-SSSCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 56889999999992 117999999999876 5999999999999
No 356
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=20.42 E-value=91 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.2
Q ss_pred cccCCHHHHHHHHHHHHc-CCChhHHHHH
Q 015941 347 AVTVTPEEREAIERLEAM-GFDRALVLEV 374 (398)
Q Consensus 347 ~~~lt~ee~~ai~rl~~l-Gf~~~~~~~a 374 (398)
.+.||+||.+.|+..... |.+..+.|..
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~s~SeyiR~ 47 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGLTVSAYIRN 47 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 578999999999988765 8877666654
No 357
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=20.02 E-value=74 Score=27.61 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015941 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (398)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~~ 29 (398)
.|+|+ ++|+.+.+++++..||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45555 6899999999999999986554
Done!