BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015942
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AKF|A Chain A, Crystal Structure Of Vipd From Legionella Pneumophila
          Length = 577

 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 155 GFSFSAAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQ------E 208
           G   S  G     +LG+ Q L E+G IK  T ++G+SAGA+  +++A G  ++      E
Sbjct: 39  GLVLSGGGAKGISYLGMIQALQERGKIKNLTHVSGASAGAMTASILAVGMDIKDIKKLIE 98

Query: 209 ALNATKTLAENC---RRRGTAFR 228
            L+ TK L  +    R RG  FR
Sbjct: 99  GLDITKLLDNSGVGFRARGDRFR 121


>pdb|3ISM|C Chain C, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM OF
           ENDOG Inhibition
          Length = 359

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 153 TPGFSFSA-AGLLFPY--HLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGASMQEA 209
           TP   F A AG   P+   L V   L E+  + +  P   ++ G ++    A+ +   EA
Sbjct: 152 TPPLEFYAHAGCTAPFAASLKVRAALEEQASLDQDGPATPTTPGELSADDAAALSGEFEA 211

Query: 210 LNATKTLAENCRRRGTAFRLGAVLRDILQKFLPDDVHTRSSGRVRVAVTQILWRPRGLLV 269
               +   E  R     F L  ++       +PD VH  S  ++  A  +I+W+   LL 
Sbjct: 212 TLTKENPLEEYRTLMKRFVLTKII-------VPDSVHQASVKKIAAAAREIIWK---LLF 261

Query: 270 DQFDSKED 277
           D   S ED
Sbjct: 262 DGTPSAED 269


>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
           Full-Length Spcu In Complex With Full-Length Exou From
           The Type Iii Secretion System Of Pseudomonas Aeruginosa
          Length = 711

 Score = 32.0 bits (71), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 160 AAGLLFPYHLGVAQLLIEKGYIKETTPLAGSSAGAIACAVIASGAS 205
           A G  +P   G    L EKG +     ++GSSAG I  A++ASG S
Sbjct: 138 AKGAAYP---GAMLALEEKGMLDGIRSMSGSSAGGITAALLASGMS 180


>pdb|2L2O|A Chain A, Solution Structure Of Human Hspc280 Protein
          Length = 89

 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 103 LIERSEKLGSSGEDYK--ERIGAVMEDEIEPEVIWEQRVRDIEAEKERRVVTTPG 155
           L+E   +LGS   D K   + G +  D+ +   ++E  V  ++A K R++VT PG
Sbjct: 10  LVEEIHRLGSKNADGKLSVKFGVLFRDD-KSANLFEALVGTLKAAKRRKIVTYPG 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,932,506
Number of Sequences: 62578
Number of extensions: 428370
Number of successful extensions: 910
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 6
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)