Query 015945
Match_columns 398
No_of_seqs 306 out of 1295
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 2.5E-85 8.4E-90 637.4 32.2 268 111-395 6-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 1.2E-84 4.2E-89 639.8 32.0 273 110-396 5-284 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 7.1E-84 2.4E-88 622.2 30.1 261 110-393 2-267 (267)
4 3luy_A Probable chorismate mut 100.0 2.7E-81 9.1E-86 619.9 26.6 269 110-397 5-291 (329)
5 1phz_A Protein (phenylalanine 99.8 2.3E-20 8E-25 188.6 9.4 84 293-391 27-111 (429)
6 2d8d_A Aroag, phospho-2-dehydr 99.5 1.5E-15 5.3E-20 123.1 -1.0 76 27-111 4-87 (90)
7 3ret_A Salicylate biosynthesis 99.4 5.6E-15 1.9E-19 122.4 -3.2 81 21-110 3-91 (101)
8 1ecm_A Endo-oxabicyclic transi 99.4 4.4E-15 1.5E-19 124.5 -5.2 74 27-109 6-88 (109)
9 3nvt_A 3-deoxy-D-arabino-heptu 99.3 3.6E-13 1.2E-17 135.8 0.6 74 27-109 29-110 (385)
10 3rmi_A Chorismate mutase prote 99.3 1.5E-14 5E-19 122.5 -8.9 76 25-109 11-95 (114)
11 2gtv_X CM, chorismate mutase; 99.2 7.3E-14 2.5E-18 116.2 -6.5 75 27-110 4-95 (104)
12 1ybz_A Chorismate mutase; cons 99.2 8E-13 2.7E-17 107.4 -3.3 64 27-109 18-89 (91)
13 2vkl_A RV0948C/MT0975; helical 99.1 4.8E-12 1.6E-16 102.7 -1.0 65 26-101 12-84 (90)
14 2gbb_A Putative chorismate mut 98.3 1.3E-08 4.4E-13 90.5 -6.2 61 45-111 6-75 (156)
15 2fp1_A Chorismate mutase; alph 98.2 3.5E-08 1.2E-12 88.5 -5.0 61 45-111 9-78 (166)
16 2ko1_A CTR148A, GTP pyrophosph 96.8 0.0083 2.8E-07 46.2 9.1 67 299-383 4-70 (88)
17 1zpv_A ACT domain protein; str 96.6 0.013 4.6E-07 45.6 9.7 39 299-337 4-42 (91)
18 2f1f_A Acetolactate synthase i 96.2 0.028 9.7E-07 49.9 10.2 68 300-384 3-70 (164)
19 2pc6_A Probable acetolactate s 96.1 0.029 9.9E-07 49.9 9.8 68 300-384 4-71 (165)
20 2fgc_A Acetolactate synthase, 95.9 0.045 1.6E-06 49.8 10.0 72 300-388 29-100 (193)
21 1y7p_A Hypothetical protein AF 94.0 0.091 3.1E-06 48.7 6.6 68 299-382 3-70 (223)
22 2f06_A Conserved hypothetical 92.2 0.52 1.8E-05 39.7 8.3 35 301-335 72-107 (144)
23 2jhe_A Transcription regulator 91.8 0.88 3E-05 38.8 9.5 61 303-384 3-63 (190)
24 1wdn_A GLNBP, glutamine bindin 91.7 3.1 0.00011 35.6 13.0 99 110-226 108-206 (226)
25 2f06_A Conserved hypothetical 91.6 0.7 2.4E-05 38.9 8.4 35 301-335 7-41 (144)
26 4f3p_A Glutamine-binding perip 89.8 3 0.0001 36.9 11.5 85 110-201 129-213 (249)
27 3h7m_A Sensor protein; histidi 89.8 2.4 8.1E-05 36.7 10.5 99 110-226 116-214 (234)
28 3mpk_A Virulence sensor protei 89.6 1.3 4.4E-05 40.2 8.8 99 110-226 138-237 (267)
29 3k4u_A Binding component of AB 89.2 1.3 4.4E-05 39.2 8.4 98 111-226 115-212 (245)
30 1u8s_A Glycine cleavage system 88.8 4.4 0.00015 35.7 11.5 38 299-336 92-129 (192)
31 1xt8_A Putative amino-acid tra 88.3 4.2 0.00014 37.1 11.5 94 111-226 153-249 (292)
32 3kzg_A Arginine 3RD transport 87.3 2.7 9.1E-05 36.9 9.2 98 110-226 109-214 (237)
33 2nyi_A Unknown protein; protei 85.7 3.1 0.00011 37.1 8.7 37 299-335 92-128 (195)
34 2qpq_A Protein BUG27; alpha/be 84.0 2.8 9.4E-05 40.0 8.0 126 112-247 131-285 (301)
35 3lou_A Formyltetrahydrofolate 83.9 5.7 0.0002 38.0 10.1 67 300-381 10-81 (292)
36 3o1l_A Formyltetrahydrofolate 82.8 7.1 0.00024 37.6 10.3 69 298-381 20-91 (302)
37 3del_B Arginine binding protei 82.7 5.7 0.00019 34.6 9.1 49 110-161 117-165 (242)
38 3obi_A Formyltetrahydrofolate 81.4 8.2 0.00028 36.8 10.2 67 300-381 6-75 (288)
39 3tql_A Arginine-binding protei 80.9 3.9 0.00013 35.0 7.2 50 110-161 108-158 (227)
40 3k5p_A D-3-phosphoglycerate de 80.3 11 0.00037 38.0 11.0 68 299-385 342-409 (416)
41 1sc6_A PGDH, D-3-phosphoglycer 80.1 5 0.00017 40.1 8.5 63 300-381 331-393 (404)
42 3qax_A Probable ABC transporte 79.7 8.4 0.00029 33.9 9.2 49 110-161 138-186 (268)
43 1ygy_A PGDH, D-3-phosphoglycer 79.7 7.3 0.00025 40.2 9.9 73 300-389 454-526 (529)
44 3nrb_A Formyltetrahydrofolate 79.3 9.7 0.00033 36.3 9.9 67 300-381 7-74 (287)
45 4i62_A Amino acid ABC transpor 78.9 3.4 0.00012 36.6 6.3 50 110-161 149-198 (269)
46 3n0v_A Formyltetrahydrofolate 78.9 7 0.00024 37.3 8.8 67 300-381 8-76 (286)
47 1u8s_A Glycine cleavage system 78.6 7.8 0.00027 34.0 8.5 35 301-335 7-41 (192)
48 4dz1_A DALS D-alanine transpor 78.6 7.5 0.00026 34.7 8.6 82 110-201 136-225 (259)
49 2f5x_A BUGD; periplasmic bindi 77.2 4.4 0.00015 38.9 6.9 50 112-162 140-193 (312)
50 2y7i_A STM4351; arginine-bindi 77.1 4.2 0.00014 35.0 6.2 50 110-161 111-160 (229)
51 4h5g_A Amino acid ABC superfam 76.8 3.9 0.00013 36.4 6.0 49 111-161 123-171 (243)
52 3kbr_A Cyclohexadienyl dehydra 76.8 3 0.0001 36.4 5.2 49 111-161 125-173 (239)
53 1xs5_A 29 kDa protein, membran 75.7 48 0.0016 30.3 15.7 108 110-226 3-122 (241)
54 3i6v_A Periplasmic His/Glu/Gln 75.6 18 0.00062 31.5 10.1 93 113-226 108-201 (232)
55 2nyi_A Unknown protein; protei 74.5 11 0.00038 33.4 8.3 36 300-335 5-40 (195)
56 2yjp_A Putative ABC transporte 74.2 4.8 0.00016 36.9 6.1 49 111-161 164-212 (291)
57 2hpg_A ABC transporter, peripl 73.8 26 0.0009 33.4 11.4 165 104-274 3-220 (327)
58 3ksx_A Nitrate transport prote 73.6 57 0.0019 30.1 14.3 142 109-259 28-188 (324)
59 2vha_A Periplasmic binding tra 73.1 13 0.00044 33.5 8.7 49 111-161 130-182 (287)
60 2pfz_A Putative exported prote 73.0 60 0.0021 30.2 13.7 170 111-288 2-214 (301)
61 4ab5_A Transcriptional regulat 71.9 27 0.00093 29.2 10.1 137 109-263 7-163 (222)
62 3hv1_A Polar amino acid ABC up 71.5 4 0.00014 36.5 4.7 99 110-226 126-232 (268)
63 1ii5_A SLR1257 protein; membra 71.3 21 0.00073 30.4 9.3 117 134-263 45-168 (233)
64 2pyy_A Ionotropic glutamate re 70.7 27 0.00092 29.5 9.8 83 110-201 111-193 (228)
65 2pvu_A ARTJ; basic amino acid 69.0 5.3 0.00018 35.9 5.0 49 111-161 147-196 (272)
66 3mpk_A Virulence sensor protei 69.0 33 0.0011 30.5 10.4 113 134-262 72-192 (267)
67 3kzg_A Arginine 3RD transport 68.7 9.6 0.00033 33.1 6.5 115 134-263 44-164 (237)
68 1lst_A Lysine, arginine, ornit 68.6 7.6 0.00026 33.6 5.8 49 111-161 111-161 (239)
69 1wdn_A GLNBP, glutamine bindin 68.1 25 0.00084 29.7 8.9 114 134-263 42-163 (226)
70 2pfy_A Putative exported prote 68.1 77 0.0026 29.4 13.3 156 111-274 3-200 (301)
71 2yln_A Putative ABC transporte 67.0 17 0.00058 33.0 8.1 48 110-161 163-210 (283)
72 3p96_A Phosphoserine phosphata 66.5 18 0.0006 35.5 8.6 36 301-336 13-48 (415)
73 3del_B Arginine binding protei 65.6 14 0.00048 32.0 6.9 114 134-264 51-172 (242)
74 1ii5_A SLR1257 protein; membra 65.4 9.9 0.00034 32.5 5.8 47 111-161 116-162 (233)
75 2q88_A EHUB, putative ABC tran 62.7 10 0.00034 33.4 5.5 49 111-161 124-173 (257)
76 3jv9_A OXYR, transcriptional r 62.4 66 0.0022 26.6 11.6 136 109-262 3-164 (219)
77 3mtj_A Homoserine dehydrogenas 62.3 13 0.00045 37.6 6.8 68 300-382 357-426 (444)
78 2x26_A Periplasmic aliphatic s 62.2 91 0.0031 28.2 12.4 138 110-258 3-160 (308)
79 3un6_A Hypothetical protein sa 60.9 1.1E+02 0.0036 28.5 15.2 135 110-256 52-208 (341)
80 2dvz_A BUGE, putative exported 59.9 11 0.00039 36.0 5.6 50 112-162 144-197 (314)
81 4eq9_A ABC transporter substra 58.1 41 0.0014 28.8 8.6 50 110-161 114-169 (246)
82 2pyy_A Ionotropic glutamate re 57.9 82 0.0028 26.3 12.5 114 134-263 41-164 (228)
83 3tqw_A Methionine-binding prot 57.7 1.2E+02 0.004 28.0 12.3 109 111-228 4-125 (240)
84 3i6v_A Periplasmic His/Glu/Gln 57.0 36 0.0012 29.5 8.1 111 134-262 45-157 (232)
85 4go7_X Aspartokinase; transfer 56.6 25 0.00086 31.6 7.0 31 306-336 42-72 (200)
86 1tdj_A Biosynthetic threonine 56.5 13 0.00045 38.3 5.7 69 300-386 338-406 (514)
87 2ozz_A Hypothetical protein YH 56.1 55 0.0019 30.1 9.3 110 134-256 45-161 (231)
88 2re1_A Aspartokinase, alpha an 55.4 10 0.00036 32.6 4.1 35 300-334 25-60 (167)
89 3s1t_A Aspartokinase; ACT doma 54.9 20 0.00069 31.4 6.0 60 306-380 23-82 (181)
90 2hxr_A HTH-type transcriptiona 54.8 98 0.0033 26.2 12.2 144 109-262 29-185 (238)
91 3qax_A Probable ABC transporte 54.2 42 0.0014 29.2 8.0 114 134-264 71-193 (268)
92 3uif_A Sulfonate ABC transport 53.8 1.4E+02 0.0048 27.7 15.1 116 134-259 45-175 (348)
93 3n5l_A Binding protein compone 53.5 40 0.0014 31.6 8.2 84 110-202 115-213 (310)
94 3tql_A Arginine-binding protei 53.3 48 0.0017 27.8 8.1 114 134-263 42-164 (227)
95 3ho7_A OXYR; beta-alpha-barrel 52.8 54 0.0018 27.6 8.4 136 109-262 10-167 (232)
96 3onm_A Transcriptional regulat 52.6 1.1E+02 0.0037 26.1 13.0 133 109-261 26-171 (238)
97 4i62_A Amino acid ABC transpor 52.3 30 0.001 30.2 6.8 114 134-263 82-204 (269)
98 2vpn_A Periplasmic substrate b 52.1 1.5E+02 0.0052 27.6 15.2 172 111-288 2-217 (316)
99 3h7m_A Sensor protein; histidi 50.8 88 0.003 26.3 9.5 112 134-262 51-170 (234)
100 3kbr_A Cyclohexadienyl dehydra 50.1 8.7 0.0003 33.3 2.7 115 134-264 55-180 (239)
101 2dt9_A Aspartokinase; protein- 50.1 27 0.00091 29.9 5.9 29 306-334 23-51 (167)
102 2dtj_A Aspartokinase; protein- 48.5 18 0.00063 31.4 4.6 34 300-333 15-49 (178)
103 2v25_A Major cell-binding fact 48.2 14 0.00048 32.2 3.8 50 111-162 148-201 (259)
104 2zzv_A ABC transporter, solute 47.8 1.3E+02 0.0046 28.6 11.1 133 110-247 34-210 (361)
105 4ddd_A Immunogenic protein; ss 47.7 1.6E+02 0.0056 27.5 11.6 133 110-248 32-195 (327)
106 3mah_A Aspartokinase; aspartat 47.5 15 0.0005 31.3 3.7 50 308-381 29-78 (157)
107 3k4u_A Binding component of AB 47.4 30 0.001 30.0 5.9 114 134-263 45-169 (245)
108 4f3p_A Glutamine-binding perip 44.5 77 0.0026 27.4 8.2 114 134-263 63-184 (249)
109 1ixc_A CBNR, LYSR-type regulat 44.3 1.6E+02 0.0056 25.8 14.4 144 108-261 89-247 (294)
110 1p99_A Hypothetical protein PG 44.0 62 0.0021 30.4 7.9 88 110-207 39-134 (295)
111 3qsl_A Putative exported prote 43.8 1.4E+02 0.0048 27.1 10.3 113 134-255 65-193 (346)
112 4dz1_A DALS D-alanine transpor 42.7 1.7E+02 0.0058 25.5 11.9 116 134-263 69-197 (259)
113 2fp1_A Chorismate mutase; alph 42.5 11 0.00037 33.1 2.1 29 24-57 93-121 (166)
114 4ib2_A Putative lipoprotein; p 41.5 64 0.0022 30.1 7.3 88 110-207 11-106 (252)
115 3tvi_A Aspartokinase; structur 41.3 82 0.0028 31.7 8.7 128 228-383 223-363 (446)
116 3ix1_A N-formyl-4-amino-5-amin 41.2 1.8E+02 0.0062 26.1 10.5 93 134-234 35-140 (302)
117 3k2d_A ABC-type metal ION tran 40.9 84 0.0029 29.0 8.0 91 109-208 5-103 (237)
118 2h9b_A HTH-type transcriptiona 40.6 2E+02 0.0069 25.8 11.9 141 111-261 91-248 (312)
119 3hv1_A Polar amino acid ABC up 40.3 8.8 0.0003 34.2 1.2 116 134-263 61-188 (268)
120 2pvu_A ARTJ; basic amino acid 40.2 87 0.003 27.6 8.0 114 134-263 81-202 (272)
121 1zbm_A Hypothetical protein AF 39.4 31 0.001 31.2 4.8 51 110-162 102-152 (280)
122 3p7i_A PHND, subunit of alkylp 38.4 39 0.0013 32.0 5.5 88 111-201 126-221 (321)
123 3hn0_A Nitrate transport prote 38.0 26 0.00087 32.4 4.0 51 110-161 95-150 (283)
124 2vha_A Periplasmic binding tra 37.5 2.1E+02 0.0072 25.1 10.2 115 135-263 65-188 (287)
125 3oxn_A Putative transcriptiona 37.5 76 0.0026 27.1 6.9 137 109-263 18-173 (241)
126 3hn0_A Nitrate transport prote 37.5 2.4E+02 0.0081 25.6 13.1 148 110-270 5-168 (283)
127 2v25_A Major cell-binding fact 37.4 62 0.0021 27.8 6.3 115 134-263 82-206 (259)
128 1lst_A Lysine, arginine, ornit 36.6 35 0.0012 29.2 4.5 115 134-262 44-166 (239)
129 2iee_A ORF2, probable ABC tran 36.1 63 0.0022 28.7 6.3 47 110-161 131-179 (271)
130 4ddd_A Immunogenic protein; ss 35.9 39 0.0013 32.0 5.1 51 111-162 146-203 (327)
131 3ab4_A Aspartokinase; aspartat 35.7 2.2E+02 0.0074 28.0 10.7 98 229-332 190-297 (421)
132 2dtj_A Aspartokinase; protein- 34.8 79 0.0027 27.3 6.5 34 299-332 96-130 (178)
133 3gxa_A Outer membrane lipoprot 34.8 72 0.0024 30.2 6.6 89 110-207 23-119 (275)
134 3qsl_A Putative exported prote 34.5 30 0.001 31.8 3.9 50 111-161 138-194 (346)
135 2xwv_A Sialic acid-binding per 34.2 2.9E+02 0.0099 25.7 16.2 173 111-288 4-220 (312)
136 2y7i_A STM4351; arginine-bindi 33.8 46 0.0016 28.1 4.8 114 134-263 46-166 (229)
137 4eq9_A ABC transporter substra 33.6 1E+02 0.0034 26.3 7.0 115 135-263 49-175 (246)
138 2yjp_A Putative ABC transporte 32.3 76 0.0026 28.6 6.3 114 134-263 98-218 (291)
139 2y7p_A LYSR-type regulatory pr 32.2 72 0.0025 27.1 5.8 143 109-262 7-162 (218)
140 2ql3_A Probable transcriptiona 32.0 2.1E+02 0.0072 23.4 10.6 139 110-258 5-156 (209)
141 1us5_A Putative GLUR0 ligand b 31.4 2.9E+02 0.0098 24.8 11.4 138 109-257 18-187 (314)
142 2q88_A EHUB, putative ABC tran 31.2 43 0.0015 29.1 4.2 113 135-263 54-179 (257)
143 4ef1_A Pheromone COB1/lipoprot 31.0 3.2E+02 0.011 25.2 13.9 89 110-208 4-100 (246)
144 4esw_A Pyrimidine biosynthesis 30.4 1.5E+02 0.0053 27.5 8.3 87 134-228 39-133 (342)
145 2re1_A Aspartokinase, alpha an 30.0 36 0.0012 29.1 3.4 33 300-332 105-138 (167)
146 1uth_A LYSR-type regulatory pr 29.5 3.1E+02 0.011 24.6 11.2 122 131-263 130-260 (315)
147 2dt9_A Aspartokinase; protein- 29.3 35 0.0012 29.1 3.2 34 299-332 96-130 (167)
148 4gvo_A LMO2349 protein; struct 29.1 1.9E+02 0.0065 24.9 8.2 81 110-201 117-205 (243)
149 3uif_A Sulfonate ABC transport 28.4 42 0.0014 31.5 3.8 49 110-161 118-173 (348)
150 3cg4_A Response regulator rece 28.1 1.5E+02 0.005 22.9 6.7 111 209-321 12-124 (142)
151 2esn_A Probable transcriptiona 27.6 3.2E+02 0.011 24.1 10.7 115 131-263 126-259 (310)
152 2rjz_A PILO protein; structura 26.9 56 0.0019 27.7 4.0 78 25-127 14-93 (147)
153 3fzv_A Probable transcriptiona 26.3 1.3E+02 0.0044 26.6 6.7 140 109-258 94-246 (306)
154 1tdj_A Biosynthetic threonine 26.2 53 0.0018 33.8 4.3 34 303-337 436-469 (514)
155 3mst_A Putative nitrate transp 26.1 1E+02 0.0036 28.5 5.8 64 110-177 88-153 (244)
156 3fxq_A LYSR type regulator of 26.1 3.4E+02 0.012 23.9 10.6 137 110-262 92-248 (305)
157 1xt8_A Putative amino-acid tra 25.8 1.8E+02 0.0063 25.8 7.6 114 134-263 87-207 (292)
158 2czl_A Hypothetical protein TT 25.7 72 0.0025 28.5 4.8 50 110-161 95-144 (272)
159 2h98_A HTH-type transcriptiona 25.5 3.7E+02 0.013 24.1 12.0 138 111-261 91-248 (313)
160 3lte_A Response regulator; str 25.4 61 0.0021 24.9 3.7 38 210-247 12-49 (132)
161 3aon_B V-type sodium ATPase su 24.6 1.5E+02 0.0053 24.0 6.1 67 112-184 3-72 (115)
162 1vk8_A Hypothetical protein TM 23.9 46 0.0016 27.0 2.7 36 143-178 35-70 (106)
163 2gbb_A Putative chorismate mut 23.8 41 0.0014 29.1 2.5 26 26-56 91-116 (156)
164 3grc_A Sensor protein, kinase; 23.5 51 0.0017 25.7 2.9 77 210-289 12-89 (140)
165 3ksx_A Nitrate transport prote 23.4 79 0.0027 29.1 4.7 49 110-161 130-185 (324)
166 2yln_A Putative ABC transporte 23.2 86 0.0029 28.1 4.8 113 134-262 97-215 (283)
167 3ir1_A Outer membrane lipoprot 23.0 1.6E+02 0.0054 27.3 6.6 88 111-207 2-97 (245)
168 2cdq_A Aspartokinase; aspartat 22.1 83 0.0028 32.3 4.9 100 261-381 299-410 (510)
169 3up9_A Putative uncharacterize 21.8 1.9E+02 0.0066 26.7 6.9 90 109-208 6-104 (245)
170 3kht_A Response regulator; PSI 21.8 92 0.0031 24.4 4.2 79 210-290 11-91 (144)
171 2rc8_A Glutamate [NMDA] recept 21.5 93 0.0032 28.2 4.7 80 111-201 170-259 (294)
172 3i42_A Response regulator rece 21.4 53 0.0018 25.1 2.6 77 211-290 10-87 (127)
173 1sw5_A Osmoprotection protein 21.1 3.3E+02 0.011 24.6 8.5 138 134-272 35-207 (275)
174 2d00_A V-type ATP synthase sub 20.8 1E+02 0.0034 24.8 4.2 64 111-178 3-68 (109)
175 3eod_A Protein HNR; response r 20.8 1E+02 0.0036 23.4 4.3 77 209-289 12-88 (130)
176 2fyi_A HTH-type transcriptiona 20.7 3.7E+02 0.013 22.4 11.1 142 109-260 13-168 (228)
177 2ozz_A Hypothetical protein YH 20.4 1.3E+02 0.0046 27.4 5.4 47 112-160 113-161 (231)
178 3gl9_A Response regulator; bet 20.2 68 0.0023 24.6 3.0 77 210-289 8-85 (122)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=2.5e-85 Score=637.41 Aligned_cols=268 Identities=50% Similarity=0.761 Sum_probs=255.1
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEE
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL 190 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l 190 (398)
.++|+||||+|||||+||+++| ++++|.||++||++|++|++||||||||||++|.|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4689999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCcee
Q 015945 191 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 269 (398)
Q Consensus 191 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~~-~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il 269 (398)
||+|||++++|.++++|++||||||||+||++||+++ +++.++++|||+||++|+++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999994 999999999999999999887778999999999999999999
Q ss_pred ecccccCCCCceEEEEEecCCCCC-------CCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCc
Q 015945 270 AEKIQDDDDNVTRFLILAREPIIA-------GTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 342 (398)
Q Consensus 270 ~~~I~D~~~N~TRF~vi~~~~~~~-------~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~ 342 (398)
++||||.++|+|||+||++++... .+++.+||||+|+++|+||+|+++|+.|+.+|||||||||||+++++
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 240 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA-- 240 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCCCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC--
Confidence 999999999999999999986430 12346899999999999999999999999999999999999999864
Q ss_pred cccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCC
Q 015945 343 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMD 395 (398)
Q Consensus 343 ~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp~~ 395 (398)
|+|.|||||+||.+|++++++|++|++.|.++|+|||||+.
T Consensus 241 ------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 ------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp ------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred ------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999965
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=1.2e-84 Score=639.80 Aligned_cols=273 Identities=30% Similarity=0.460 Sum_probs=257.5
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCC--CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcC-CeEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH-RLHIVG 186 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg--~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~-~l~I~~ 186 (398)
...+|+||||+|||||+||+++|+ +.++++|.||++||++|++|++||||||||||++|.|.+|||+|.++ +++|+|
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Ivg 84 (313)
T 3mwb_A 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIR 84 (313)
T ss_dssp --CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEE
T ss_pred cccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEE
Confidence 357999999999999999999884 57899999999999999999999999999999999999999999985 899999
Q ss_pred EEEEeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015945 187 EVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 264 (398)
Q Consensus 187 Ei~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~y 264 (398)
|+.+||+|||++++|.++++|++||||||||+||++||++ ++++.++++|||+||++|+++++++.|||||+.||++|
T Consensus 85 E~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 164 (313)
T 3mwb_A 85 EALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQ 164 (313)
T ss_dssp EEEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHC
T ss_pred EEEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHc
Confidence 9999999999999999999999999999999999999998 48999999999999999998766678999999999999
Q ss_pred C-CceeecccccCCCCceEEEEEecCCCCCCCCCCceEEEEEEeC-CCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCc
Q 015945 265 G-LDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLE-EGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 342 (398)
Q Consensus 265 g-L~il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~ktsi~f~~~-~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~ 342 (398)
| |+||+++|||.++|+|||+||+++...+.+++.+||||+|+++ |+||+|+++|+.|+.+|||||||||||+++++
T Consensus 165 g~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 242 (313)
T 3mwb_A 165 PGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242 (313)
T ss_dssp TTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred CChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC--
Confidence 9 9999999999999999999999986545557889999999997 99999999999999999999999999999864
Q ss_pred cccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCC
Q 015945 343 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDT 396 (398)
Q Consensus 343 ~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp~~~ 396 (398)
|+|.||||++||.+|++++++|++|++.|.++|+|||||+..
T Consensus 243 ------------~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 284 (313)
T 3mwb_A 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
T ss_dssp ------------TSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred ------------ccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCc
Confidence 999999999999999999999999999999999999999854
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=7.1e-84 Score=622.17 Aligned_cols=261 Identities=27% Similarity=0.389 Sum_probs=249.3
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCC--ccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKC--ETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGE 187 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~--~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~E 187 (398)
.+++|+||||+|||||+||+++|+.. ++++|.||++||++|++|++||||||||||++|.|.+|||+|.+++++|+||
T Consensus 2 ~~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE 81 (267)
T 2qmw_A 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGE 81 (267)
T ss_dssp --CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEE
T ss_pred CccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEE
Confidence 46799999999999999999999864 4999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCc
Q 015945 188 VQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLD 267 (398)
Q Consensus 188 i~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~ 267 (398)
+.+||+|||++++|.++++|++||||||||+||++||++++++.++++|||+||++|++ + .|||||+.||++|||+
T Consensus 82 ~~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~ 157 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFT 157 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCC
T ss_pred EEEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 3 8999999999999999
Q ss_pred eeecccccCCCCceEEEEEecCCCCCCCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccc
Q 015945 268 ILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTL---EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVV 344 (398)
Q Consensus 268 il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~ktsi~f~~---~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~ 344 (398)
||+++|||+++|+|||+||++++ .+ + .+||||+|++ +|+||+|+++|+.|+.+|||||||||||+++++
T Consensus 158 il~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~---- 229 (267)
T 2qmw_A 158 PIDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL---- 229 (267)
T ss_dssp EEEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST----
T ss_pred EeeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCC----
Confidence 99999999999999999999986 22 4 7899999999 899999999999999999999999999999864
Q ss_pred cCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEcccc
Q 015945 345 DDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYP 393 (398)
Q Consensus 345 ~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp 393 (398)
|+|.||||++ |.+|++++++|++|+..+.++|+|||||
T Consensus 230 ----------~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 230 ----------GMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp ----------TCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ----------ccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 9999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=2.7e-81 Score=619.89 Aligned_cols=269 Identities=24% Similarity=0.330 Sum_probs=248.5
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCC--------CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcC-
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYP--------KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH- 180 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg--------~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~- 180 (398)
.+++|+||||+|||||+||+++|+ +.++++|.||++||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~ 83 (329)
T 3luy_A 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAK 83 (329)
T ss_dssp CCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccC
Confidence 568999999999999999998752 567899999999999999999 9999999999999999999999875
Q ss_pred CeEEEEEEEEeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHh
Q 015945 181 RLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQA 260 (398)
Q Consensus 181 ~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~a 260 (398)
+++|+||+.+||+|||++++|.++++|++||||||||+||++||++++++.++++|||+||+.++. +.|||||+.|
T Consensus 84 ~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~~----~~AAIas~~A 159 (329)
T 3luy_A 84 DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLIP----GEIAFGPAIC 159 (329)
T ss_dssp SCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCCT----TEEEEECTTH
T ss_pred CcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhCC----CCceeCCHHH
Confidence 899999999999999999999999999999999999999999999998999999999999998863 6799999999
Q ss_pred HHHcCCceeecccccCCCCceEEEEEecCCCC-------CCCCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceeeee
Q 015945 261 AEIYGLDILAEKIQDDDDNVTRFLILAREPII-------AGTDRPYKTSIVFTLE--EGPGMLFKALAVFALRDINLTKI 331 (398)
Q Consensus 261 A~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~-------~~~~~~~ktsi~f~~~--~~pGaL~~~L~~F~~~~INLt~I 331 (398)
|++|||+||+++|||+++|+|||+||++++.. ....+.+|||++|.++ |+||+|+++|++|+.+|||||||
T Consensus 160 AelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkI 239 (329)
T 3luy_A 160 GELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239 (329)
T ss_dssp HHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEE
Confidence 99999999999999999999999999997532 1112347888888776 58999999999999999999999
Q ss_pred eeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCCC
Q 015945 332 ESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDTT 397 (398)
Q Consensus 332 ESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp~~~~ 397 (398)
||||++++ .|+|.|||||+||.+|++++++|++|++.|.++|+|||||+...
T Consensus 240 ESRP~~~~--------------~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~~ 291 (329)
T 3luy_A 240 ISRPIKGR--------------TGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRREH 291 (329)
T ss_dssp EEEEETTE--------------EEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCCC
T ss_pred EeeECCCC--------------CccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCCc
Confidence 99999985 49999999999999999999999999999999999999998653
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.81 E-value=2.3e-20 Score=188.63 Aligned_cols=84 Identities=30% Similarity=0.429 Sum_probs=79.0
Q ss_pred CCCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHH
Q 015945 293 AGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRA 372 (398)
Q Consensus 293 ~~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v 372 (398)
+..++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+ |+|.|||||+ |.+|+++
T Consensus 27 e~~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~--------------~eY~FfVD~e-h~~d~~v 91 (429)
T 1phz_A 27 DNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------DEYEFFTYLD-KRTKPVL 91 (429)
T ss_dssp CCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCT--------------TEEEEEECBC-GGGHHHH
T ss_pred CCCCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCC--------------ccEEEEEEEe-eCCCHHH
Confidence 334578899999999999999999999999999999999999999864 9999999999 9999999
Q ss_pred HHHHHHHHHh-cCceEEEcc
Q 015945 373 QFALGHLQEF-ATFLRVLGC 391 (398)
Q Consensus 373 ~~al~~L~~~-~~~vkiLGs 391 (398)
+++|++|+.. +.++|+||+
T Consensus 92 ~~AL~eL~~~~~~~vkiLGs 111 (429)
T 1phz_A 92 GSIIKSLRNDIGATVHELSR 111 (429)
T ss_dssp HHHHHHHHHTTCCCEEEEET
T ss_pred HHHHHHHHhhccceEEECCC
Confidence 9999999999 999999999
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=99.49 E-value=1.5e-15 Score=123.11 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=67.4
Q ss_pred CcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccCCCccc
Q 015945 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPKPLS 98 (398)
Q Consensus 27 ~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G~lp~~~i~~~~~I~ 98 (398)
+|.++|.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +++++++.+.+.|+|+++.++ +||
T Consensus 4 ~L~~lR~~ID~iD~~---l~~Ll~~--R~~~~~~i~~~K~~~~~~i~dp~RE-~~vl~~~~~~~~~~l~~~~i~---~if 74 (90)
T 2d8d_A 4 RIQALRKEVDRVNRE---ILRLLSE--RGRLVQEIGRLQTELGLPHYDPKRE-EEMLAYLTAENPGPFPDETIR---KLF 74 (90)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHTCCSCCHHHH-HHHHHHHHHHCCSSSCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcCHHHH-HHHHHHHHHHccCCCCHHHHH---HHH
Confidence 599999999999999 9999999 999999999 4 6 999999 999999988778999999999 499
Q ss_pred hhhcccCCCCCce
Q 015945 99 IMELSSSPDDGTK 111 (398)
Q Consensus 99 R~iis~s~~~q~~ 111 (398)
+.||++|...|.+
T Consensus 75 ~~ii~~s~~~q~~ 87 (90)
T 2d8d_A 75 KEIFKASLDLEER 87 (90)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 7
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=99.41 E-value=5.6e-15 Score=122.37 Aligned_cols=81 Identities=9% Similarity=-0.005 Sum_probs=72.1
Q ss_pred CCCCCCCcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C----C-CCCchhhHHHHHhhhhc-cCCCCcccccc
Q 015945 21 LPDLVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R----P-YTPDVQSSEANERSQDS-QSSGFHKDLNL 92 (398)
Q Consensus 21 ~~~~~~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k----~-~~P~rE~~~il~rl~~~-~~G~lp~~~i~ 92 (398)
.|+...+|.++|.+||+||.+ |++||++ |+.++.+|| | | |+|.|| +++++++.+. +.++|+++.++
T Consensus 3 ~p~~~~~L~~lR~~ID~iD~~---il~LL~~--R~~~~~~i~~~K~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~ 76 (101)
T 3ret_A 3 TPEDCTGLADIREAIDRIDLD---IVQALGR--RMDYVKAASRFEASEAAIPAPERV-AAMLPERARWAEENGLDAPFVE 76 (101)
T ss_dssp CGGGCCSHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHGGGCSSGGGTTCHHHH-HHHHHHHHHHHHHTTSCHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHhhcCCCCCCHHHH-HHHHHHHHHHhhhCCCCHHHHH
Confidence 366667899999999999999 9999999 999999999 5 5 999999 9999998884 56779999999
Q ss_pred CCCccchhhcccCCCCCc
Q 015945 93 LPKPLSIMELSSSPDDGT 110 (398)
Q Consensus 93 ~~~~I~R~iis~s~~~q~ 110 (398)
.||+.||++|+..|.
T Consensus 77 ---~if~~ii~~s~~~Q~ 91 (101)
T 3ret_A 77 ---GLFAQIIHWYIAEQI 91 (101)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 499999999987663
No 8
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=99.39 E-value=4.4e-15 Score=124.54 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=68.2
Q ss_pred CcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhc-cCCCCccccccCCCcc
Q 015945 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDS-QSSGFHKDLNLLPKPL 97 (398)
Q Consensus 27 ~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~-~~G~lp~~~i~~~~~I 97 (398)
+|.++|.+||+||++ |++||++ |+.++.+|| | | |+|+|| +++++++.+. +.|+|+++.++ .|
T Consensus 6 ~L~~lR~~ID~iD~~---L~~LL~~--R~~~~~~v~~~K~~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~---~i 76 (109)
T 1ecm_A 6 PLLALREKISALDEK---LLALLAE--RRELAVEVGKAKLLSHRPVRDIDRE-RDLLERLITLGKAHHLDAHYIT---RL 76 (109)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHHTCCHHHHH---HH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHHHhHhCCCCHHHHH---HH
Confidence 699999999999999 9999999 999999999 4 6 999999 9999998884 77789999999 49
Q ss_pred chhhcccCCCCC
Q 015945 98 SIMELSSSPDDG 109 (398)
Q Consensus 98 ~R~iis~s~~~q 109 (398)
|+.||++|...|
T Consensus 77 f~~ii~~s~~~q 88 (109)
T 1ecm_A 77 FQLIIEDSVLTQ 88 (109)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997765
No 9
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=99.28 E-value=3.6e-13 Score=135.85 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=67.0
Q ss_pred CcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccCCCccc
Q 015945 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPKPLS 98 (398)
Q Consensus 27 ~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G~lp~~~i~~~~~I~ 98 (398)
+|.++|.+||+||++ |++||++ |++++.+|| | | |+|+|| +++++++.+.+.|+|+++.++ +||
T Consensus 29 ~L~~lR~~ID~ID~~---il~LL~e--R~~~~~~Va~~K~~~g~~i~dp~RE-~~vl~~~~~~~~~~l~~~~i~---~if 99 (385)
T 3nvt_A 29 NLEELRTQVDQLNID---LLELISK--RANLVQEIGKIKGTQGSLRFDPLRE-REMLNTILAANEGPFEDSTVQ---KLF 99 (385)
T ss_dssp ---CCTTTTTHHHHH---HHHHHHH--HHHHHHHHHHHCC-----CCCHHHH-HHHHHHHHHHCCSSSCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHhhhhcCCCCCChHHH-HHHHHHHHHhccCCCCHHHHH---HHH
Confidence 799999999999999 9999999 999999999 5 5 999999 999999999888999999999 499
Q ss_pred hhhcccCCCCC
Q 015945 99 IMELSSSPDDG 109 (398)
Q Consensus 99 R~iis~s~~~q 109 (398)
|+||+.|+..|
T Consensus 100 r~Ii~~s~~~Q 110 (385)
T 3nvt_A 100 KEIFKAGLELQ 110 (385)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 10
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=99.27 E-value=1.5e-14 Score=122.49 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=68.8
Q ss_pred CCCcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhc-cCCCCccccccCCC
Q 015945 25 VPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDS-QSSGFHKDLNLLPK 95 (398)
Q Consensus 25 ~~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~-~~G~lp~~~i~~~~ 95 (398)
..+|.++|.+||+||.+ |++||++ |+.++.+|| | | |+|.|| ++|++++.+. +.++|+++.++
T Consensus 11 ~~~L~~lR~~ID~ID~~---il~LL~~--R~~~~~~I~~~K~~~~~~i~dp~RE-~~vl~~~~~~a~~~~l~~~~i~--- 81 (114)
T 3rmi_A 11 LSELAYLRQSIDNFDIT---LIHILAE--RFRCTQAIGRLKARYNLPAVDPLRE-QYQIKRLRKLAIDTHFDPDFAE--- 81 (114)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHTTCCHHHHH---
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcCHHHH-HHHHHHHHHHHHhCCCCHHHHH---
Confidence 35799999999999999 9999999 999999999 4 6 999999 9999998885 47779999999
Q ss_pred ccchhhcccCCCCC
Q 015945 96 PLSIMELSSSPDDG 109 (398)
Q Consensus 96 ~I~R~iis~s~~~q 109 (398)
.||+.||..|+..|
T Consensus 82 ~if~~Ii~~S~~~Q 95 (114)
T 3rmi_A 82 KFLKFIIKEVVHQH 95 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999998766
No 11
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=99.23 E-value=7.3e-14 Score=116.23 Aligned_cols=75 Identities=7% Similarity=0.118 Sum_probs=68.7
Q ss_pred CcchhhhHHHhhhchhhHHH--------HHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCC-CCccc
Q 015945 27 NRCGFGLDLRVLNKWECTCV--------GVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSS-GFHKD 89 (398)
Q Consensus 27 ~l~~lR~~Id~iD~~~~~i~--------~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G-~lp~~ 89 (398)
+|.++|.+||+||.+ |+ +||++ |+.++.+|| | | |+|+|| +++++++.+.+.+ +++++
T Consensus 4 ~L~~lR~~ID~ID~~---il~~~~~~~~~Ll~e--R~~l~~~Va~~K~~~g~pi~dp~RE-~~vl~~~~~~~~~~~l~~~ 77 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNK---ILKARWPWAEKLIAE--RNSLAKDVAEIKNQLGIPINDPERE-KYIYDRIRKLCKEHNVDEN 77 (104)
T ss_dssp HHHHHHHHHHHHHHH---HHTSSSSSCCCCHHH--HHHHHHHHHHHHHHHTSCSCCHHHH-HHHHHHHHHHHHHHTSCSH
T ss_pred HHHHHHHHHHHHHHH---HHHcccccHHHHHHH--HHHHHHHHHHHHHHCCCCCcChHHH-HHHHHHHHHHhhcCCCCHH
Confidence 599999999999999 99 99999 999999999 5 6 999999 9999999987766 79999
Q ss_pred cccCCCccchhhcccCCCCCc
Q 015945 90 LNLLPKPLSIMELSSSPDDGT 110 (398)
Q Consensus 90 ~i~~~~~I~R~iis~s~~~q~ 110 (398)
.++ .||+++|+.|...|.
T Consensus 78 ~i~---~if~~ii~~s~~~Q~ 95 (104)
T 2gtv_X 78 IGI---KIFQRLIEHNKALQK 95 (104)
T ss_dssp HHH---HHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHH
Confidence 999 499999999977654
No 12
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=99.16 E-value=8e-13 Score=107.45 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=57.9
Q ss_pred CcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccCCCccc
Q 015945 27 NRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPKPLS 98 (398)
Q Consensus 27 ~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G~lp~~~i~~~~~I~ 98 (398)
+|.++|.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +++++++.. ++ +||
T Consensus 18 ~L~~lR~~ID~ID~~---Ll~LL~~--R~~~~~~Ig~~K~~~~~~i~dp~RE-~~vl~~~~~----------i~---~if 78 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQ---IISLLKK--RLEIAQAIGKIKKELNLPIEDRKRE-EEVLRRAGE----------FR---EIF 78 (91)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHGG----------GH---HHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCcChHHH-HHHHHHHHH----------HH---HHH
Confidence 599999999999999 9999999 999999999 4 6 999999 999999765 45 499
Q ss_pred hhhcccCCCCC
Q 015945 99 IMELSSSPDDG 109 (398)
Q Consensus 99 R~iis~s~~~q 109 (398)
+.||+.|...|
T Consensus 79 ~~Ii~~s~~~Q 89 (91)
T 1ybz_A 79 EKILEVSKDVQ 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhH
Confidence 99999987655
No 13
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=99.11 E-value=4.8e-12 Score=102.69 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=57.3
Q ss_pred CCcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCCCCccccccCCCcc
Q 015945 26 PNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSSGFHKDLNLLPKPL 97 (398)
Q Consensus 26 ~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G~lp~~~i~~~~~I 97 (398)
++|.++|.+||+||.+ |++||++ |+.++.+|| | | |+|+|| +++++++.+.+. ++++.++. |
T Consensus 12 ~~L~~lR~~ID~iD~~---Ll~LL~~--R~~~~~~Ig~~K~~~~~~i~dp~RE-~~vl~~~~~~a~--~~p~~~e~---i 80 (90)
T 2vkl_A 12 PEIDTLREEIDRLDAE---ILALVKR--RAEVSKAIGKARMASGGTRLVHSRE-MKVIERYSELGP--DGKDLAIL---L 80 (90)
T ss_dssp -CHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHTCCCCTTTHH-HHHHHHHHTTCH--HHHHHHHH---H
T ss_pred ccHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHcc--CCHHHHHH---H
Confidence 4799999999999999 9999999 999999999 5 6 999999 999999887553 88888884 8
Q ss_pred chhh
Q 015945 98 SIME 101 (398)
Q Consensus 98 ~R~i 101 (398)
||.+
T Consensus 81 ~r~~ 84 (90)
T 2vkl_A 81 LRLG 84 (90)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7754
No 14
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=98.26 E-value=1.3e-08 Score=90.46 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=55.1
Q ss_pred HHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccCC-CCccccccCCCccchhhcccCCCCCce
Q 015945 45 CVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQSS-GFHKDLNLLPKPLSIMELSSSPDDGTK 111 (398)
Q Consensus 45 i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~G-~lp~~~i~~~~~I~R~iis~s~~~q~~ 111 (398)
|++||++ |+.++.+|| | | |+|+|| ++|++++.+.+.| +++++.++ .||+.||++|+..|..
T Consensus 6 Ll~LL~e--R~~la~~Va~~K~~~g~pI~Dp~RE-~evL~~l~~~a~~~gL~~~~i~---~ifr~Ii~~S~~~Q~~ 75 (156)
T 2gbb_A 6 TAPLINE--RLSYMKDVAGYKAENHLPIEDRIQE-EKVINSAMAQAESLGLNGESIK---PLMVAQINAAKAIQYR 75 (156)
T ss_dssp SHHHHHH--HHTTHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHTTBCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHhhcCCCCHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999999 999999999 5 6 999999 9999999987666 79999999 4999999999887754
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=98.18 E-value=3.5e-08 Score=88.47 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=54.2
Q ss_pred HHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhccC-CCCccccccCCCccchhhcccCCCCCce
Q 015945 45 CVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQS-SGFHKDLNLLPKPLSIMELSSSPDDGTK 111 (398)
Q Consensus 45 i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~~-G~lp~~~i~~~~~I~R~iis~s~~~q~~ 111 (398)
|++||++ |+.++.+|| | | |+|+|| ++|++++.+.+. ++|+++.++ .||+.||++|+..|..
T Consensus 9 Lv~LLae--R~~la~~Va~~K~~~~~pI~dp~RE-~eVL~r~~~~a~~~gL~~~~i~---~ifr~Ii~~S~~~Q~~ 78 (166)
T 2fp1_A 9 LVDAAAE--RLEVADPVAAFKWRAQLPIEDSGRV-EQQLAKLGEDARSQHIDPDYVT---RVFDDQIRATEAIEYS 78 (166)
T ss_dssp HHHHHHH--HHHTHHHHHHHHHHHTCCSCCHHHH-HHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCCCCCChHHH-HHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999999 999999999 5 6 999999 999999888544 679999999 4999999999887644
No 16
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.75 E-value=0.0083 Score=46.25 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=49.2
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHH
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGH 378 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~ 378 (398)
..+.|.+..+|+||.|.++.+.|+++|+|+..+...+... .+...+.++.. +...+.++++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-----------------~~~~~i~v~~~-~~~~l~~l~~~ 65 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-----------------IFTCNLMIFVK-NTDKLTTLMDK 65 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-----------------EEEEEEEEEES-SHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-----------------EEEEEEEEEEC-CHHHHHHHHHH
Confidence 4567788889999999999999999999999999876421 12233333332 34677888888
Q ss_pred HHHhc
Q 015945 379 LQEFA 383 (398)
Q Consensus 379 L~~~~ 383 (398)
|++..
T Consensus 66 L~~~~ 70 (88)
T 2ko1_A 66 LRKVQ 70 (88)
T ss_dssp HTTCT
T ss_pred HhcCC
Confidence 87553
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.63 E-value=0.013 Score=45.64 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=34.0
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 337 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~ 337 (398)
.+..|.+..+|+||.|.++.+.|+++|+|+..+......
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 355677888999999999999999999999999887643
No 18
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.20 E-value=0.028 Score=49.86 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
+-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... +-..+.+-+++ ++..+..+.+.|
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~---------------~~sriti~V~~--d~~~leqI~kqL 65 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP---------------TLSRMTIQTVG--DEKVLEQIEKQL 65 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS---------------SEEEEEEEEES--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC---------------CEEEEEEEEec--cHHHHHHHHHHH
Confidence 3456677789999999999999999999999999997531 23455556665 357788888888
Q ss_pred HHhcC
Q 015945 380 QEFAT 384 (398)
Q Consensus 380 ~~~~~ 384 (398)
++.-.
T Consensus 66 ~Kl~d 70 (164)
T 2f1f_A 66 HKLVD 70 (164)
T ss_dssp HHSTT
T ss_pred cCCCC
Confidence 87644
No 19
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.12 E-value=0.029 Score=49.87 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
|-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|+... +-..+.+-+++. +..+..+.++|
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~---------------g~sritivV~~d--~~~leql~kQL 66 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP---------------TLSRMTLVTNGP--DEIVEQITKQL 66 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST---------------TEEEEEEEEEEC--HHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC---------------CEEEEEEEEecc--HHHHHHHHHHh
Confidence 4567777889999999999999999999999999987531 234455555553 57788888888
Q ss_pred HHhcC
Q 015945 380 QEFAT 384 (398)
Q Consensus 380 ~~~~~ 384 (398)
.+.-.
T Consensus 67 ~Kl~d 71 (165)
T 2pc6_A 67 NKLIE 71 (165)
T ss_dssp HHSTT
T ss_pred cCCCC
Confidence 87644
No 20
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=95.86 E-value=0.045 Score=49.80 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=53.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
+-.|.+.++|+||.|.++.+.|+.+|+|+..+-.-|+... +-..+.|-++|. +..+..+.++|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~---------------gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP---------------GLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST---------------TEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC---------------CEEEEEEEEECC--HHHHHHHHHHh
Confidence 4567777889999999999999999999999999886542 234555555553 56777888888
Q ss_pred HHhcCceEE
Q 015945 380 QEFATFLRV 388 (398)
Q Consensus 380 ~~~~~~vki 388 (398)
.+...-+++
T Consensus 92 ~KLidVikV 100 (193)
T 2fgc_A 92 YKLVEVVKV 100 (193)
T ss_dssp TTSTTEEEE
T ss_pred cCcCceEEE
Confidence 775443333
No 21
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=94.01 E-value=0.091 Score=48.69 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=44.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHH
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGH 378 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~ 378 (398)
...+|.+...|+||.|.++++.++++++|+..+..+...+.+ .......+||++.. .+++++++
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~------------~ng~A~I~IEV~d~----~Le~LL~k 66 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE------------HEGKALIYFEIEGG----DFEKILER 66 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST------------TTTEEEEEEEECSS----CHHHHHHH
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCC------------cCCEEEEEEEECCC----CHHHHHHH
Confidence 357888999999999999999999999999999987654210 00123344777543 56677777
Q ss_pred HHHh
Q 015945 379 LQEF 382 (398)
Q Consensus 379 L~~~ 382 (398)
|++.
T Consensus 67 LrkI 70 (223)
T 1y7p_A 67 VKTF 70 (223)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 7643
No 22
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.20 E-value=0.52 Score=39.73 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.9
Q ss_pred EEEE-EEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 015945 301 TSIV-FTLEEGPGMLFKALAVFALRDINLTKIESRP 335 (398)
Q Consensus 301 tsi~-f~~~~~pGaL~~~L~~F~~~~INLt~IESRP 335 (398)
++++ +.++++||.|.++++.++++|||+..+.+.+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 4444 4789999999999999999999998877765
No 23
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.82 E-value=0.88 Score=38.82 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=47.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHh
Q 015945 303 IVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEF 382 (398)
Q Consensus 303 i~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~ 382 (398)
|-+...|++|-|.+++++++.+++|+..++.+|. + + +|+.+.. .....+..+...+.+.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g------------------~-i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-G------------------R-IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-T------------------E-EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-C------------------E-EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 4566779999999999999999999999999874 1 2 6777764 3445677777777766
Q ss_pred cC
Q 015945 383 AT 384 (398)
Q Consensus 383 ~~ 384 (398)
..
T Consensus 62 ~~ 63 (190)
T 2jhe_A 62 AG 63 (190)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 24
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=91.72 E-value=3.1 Score=35.61 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=63.9
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
...+|++. .|+..+......++..++....+..+++++|.+|++|+++.+-.. ....+......++.+.+...
T Consensus 108 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ 180 (226)
T 1wdn_A 108 DGKVVAVK--SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-----ILYFIKTAGNGQFKAVGDSL 180 (226)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-----HHHHHHTTTTTTEEEEEEEE
T ss_pred CCCEEEEE--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-----HHHHHHhCCCCceEEecCCc
Confidence 45789884 677666556666777788889999999999999999999886320 11111111113577777665
Q ss_pred EeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 190 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 190 l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
.+...+++.+++ +|.-..+..++|.+
T Consensus 181 ~~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 181 EAQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 566667766554 34555556666654
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=91.61 E-value=0.7 Score=38.93 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 015945 301 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 335 (398)
Q Consensus 301 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP 335 (398)
..|.+.++|+||.|.++.+.|+++|||+..|..-+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 34666789999999999999999999999986544
No 26
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=89.85 E-value=3 Score=36.85 Aligned_cols=85 Identities=14% Similarity=0.008 Sum_probs=59.6
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
...+|++. .|+..+......++..++...++..+++++|.+|++|+.+..-. .....+......++.+.+...
T Consensus 129 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~~~~~l~~~~~~~ 201 (249)
T 4f3p_A 129 NGKVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTP-----NVLFFVNNEGKGRVKVAGAPV 201 (249)
T ss_dssp TTSEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHH-----HHHHHHHTTTTTTEEEEEEEE
T ss_pred CCCEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcH-----HHHHHHHhCCCCceEEecCCC
Confidence 34688874 67666655666778888899999999999999999999988633 111111111124588888877
Q ss_pred EeeeEeeecCCC
Q 015945 190 LVVNHCLLGLPG 201 (398)
Q Consensus 190 l~I~h~Ll~~~g 201 (398)
.+...+++.+++
T Consensus 202 ~~~~~~~~~~k~ 213 (249)
T 4f3p_A 202 SGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEETT
T ss_pred CCccEEEEEcCC
Confidence 777777777655
No 27
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=89.82 E-value=2.4 Score=36.67 Aligned_cols=99 Identities=13% Similarity=-0.079 Sum_probs=63.3
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
+..+|++. .|+..+......+...+++...+..+++++|.+|++|+++..-.. ....+......++.+.+...
T Consensus 116 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3h7m_A 116 RGRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVP-----GMYIIRENRLTNLVPVARSI 188 (234)
T ss_dssp TTSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHH-----HHHHHHHTTCTTEEEEEEEE
T ss_pred CCCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHH-----HHHHHHhcCCCceEEecccc
Confidence 34688885 566555544445555788889999999999999999999886221 11111211123577777766
Q ss_pred EeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 190 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 190 l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
.+...+++.+++ +|+-.....++|.+
T Consensus 189 ~~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 189 AAQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 666667766543 45555556666554
No 28
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=89.56 E-value=1.3 Score=40.16 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
...+|++.. |+..+......++..+++..++.++++++|.+|++|+++..-. .. ...+......++.+.+...
T Consensus 138 ~g~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~----~~~~~~~~~~~l~~~~~~~ 210 (267)
T 3mpk_A 138 DGRTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SA----SYYVNRYFAGKLRIASALD 210 (267)
T ss_dssp TTCEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HH----HHHHHHHCTTTEEEEEECS
T ss_pred CCCEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HH----HHHHHhcCCCceEEEeccC
Confidence 457899864 5544444555777888999999999999999999999988722 11 1111111234688877654
Q ss_pred E-eeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 190 L-VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 190 l-~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
. +...+++.+++ +|+-..+..++|.+
T Consensus 211 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 237 (267)
T 3mpk_A 211 LPPAEIALATTRG-----------QTELMSILNKALYS 237 (267)
T ss_dssp SCCEEEEEEEETT-----------CHHHHHHHHHHHHT
T ss_pred CCceeEEEEEcCC-----------CHHHHHHHHHHHHh
Confidence 3 55556655543 56666667777765
No 29
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=89.20 E-value=1.3 Score=39.16 Aligned_cols=98 Identities=13% Similarity=0.001 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEE
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL 190 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l 190 (398)
..+|++. .|+..+......+++..++.+++..+++++|.+|++|+++..-. .....+.......+.+.+....
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-----FNVAFMAQKGQGYLVHLDTSLT 187 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-----HHHHHHHHTTTTTEEEECCCCS
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-----HHHHHHhcCCccceeecCCCcc
Confidence 5789885 67776666666788888999999999999999999999988622 1111111111234555544444
Q ss_pred eeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 191 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 191 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
+...+++.+++ +|+-..+..++|.+
T Consensus 188 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 188 YEPLGWAIKKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred cccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 44555555543 45555666666655
No 30
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=88.80 E-value=4.4 Score=35.69 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQ 336 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~ 336 (398)
..+.|.+..+|+||-|+++.+.|+.+|+|+..+...-.
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~ 129 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI 129 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcc
Confidence 34566677799999999999999999999998887643
No 31
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=88.28 E-value=4.2 Score=37.14 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHH-hhhc-CCeEEEEEE
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD-LLLR-HRLHIVGEV 188 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld-~L~~-~~l~I~~Ei 188 (398)
..+|++. .|+..+......+++.+++...+..+++++|.+|++|+++..-. ++. .+.+ .++.+.+..
T Consensus 153 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~---------~~~~~~~~~~~l~~~~~~ 221 (292)
T 1xt8_A 153 DKTLLLN--KGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT---------LLFAWVKDHPDFKMGIKE 221 (292)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCTTEEEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH---------HHHHHHHhCCCeEEcccc
Confidence 4789884 67776665666677778888999999999999999999988522 111 1222 247777655
Q ss_pred EEeeeE-eeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 189 QLVVNH-CLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 189 ~l~I~h-~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
.-+..+ +++.+++ +|+-.....++|.+
T Consensus 222 ~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 222 LGNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 445555 5555443 45555666666655
No 32
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=87.31 E-value=2.7 Score=36.86 Aligned_cols=98 Identities=7% Similarity=0.080 Sum_probs=60.1
Q ss_pred ceeEEEEEcCCCcH-HHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh------cCCe
Q 015945 110 TKVRVAYQGLPGAY-SEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL------RHRL 182 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~-s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~------~~~l 182 (398)
...+|++. .|+. .+. ....++..+++...+.++++++|.+|++|+.+..-. . ....+.... ..++
T Consensus 109 ~g~~i~~~--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~----~~~~~~~~~~~~~~l~~~l 180 (237)
T 3kzg_A 109 HGKKIGVR--KGTPYARQ-VLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-A----AKYWMASEPYAYKLIGKKY 180 (237)
T ss_dssp TTCEEEEE--TTSTHHHH-HHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-H----HHHHHTTSSTTHHHHCCSE
T ss_pred CCCEEEEe--cCCHHHHH-HHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-H----HHHHHHhCCccccccCCce
Confidence 34789885 4554 444 344677788899999999999999999999988632 1 111111111 2267
Q ss_pred EEEEEEE-EeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 183 HIVGEVQ-LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 183 ~I~~Ei~-l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
.+.+... .+...+++.+++ +|+-..+..++|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 181 KLIGKKISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp EEEEEEEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred EEecCccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 7776643 333444444332 46666666666665
No 33
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=85.70 E-value=3.1 Score=37.08 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=31.8
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 335 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP 335 (398)
.++.|.+.-+|+||-++++-+.|+.+|+|+..+...-
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t 128 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETET 128 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeee
Confidence 4556667779999999999999999999999888763
No 34
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=84.04 E-value=2.8 Score=40.03 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred eEEEEEcCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEE
Q 015945 112 VRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGE 187 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~E 187 (398)
.+++..| .|+.+|+++..++ | +...+++.+..+++.+|.+|++|+++.... ....++...++++.+-
T Consensus 131 ~~~g~~g-~Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~Lav 201 (301)
T 2qpq_A 131 VTYGSCG-NGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALAV 201 (301)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEEE
T ss_pred eEEecCC-CCcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEEE
Confidence 4555443 4888898876543 3 355689999999999999999999988643 1223333334444331
Q ss_pred ----------------------EEEeeeEeeecCCCCCccCccEEEe---cHHHHHHHHHHHhhcCCeEEecCCHHHHHH
Q 015945 188 ----------------------VQLVVNHCLLGLPGVLKEELKRVFS---HPQALAQCEMTLSNLGIVRISADDTAGAAQ 242 (398)
Q Consensus 188 ----------------------i~l~I~h~Ll~~~g~~l~~I~~V~S---Hpqal~QC~~fl~~~~~~~v~~~STA~Aa~ 242 (398)
+.....+.|++++|++-+-+.++.. .-.+..+.++++++.+.... ..+.++..+
T Consensus 202 ~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 280 (301)
T 2qpq_A 202 TSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTA-SDGPEVFQK 280 (301)
T ss_dssp CSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTCEEE-EECHHHHHH
T ss_pred cCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcCC-CCCHHHHHH
Confidence 1233456777777753222222111 11111334555555566543 346666666
Q ss_pred HHHhc
Q 015945 243 MVASI 247 (398)
Q Consensus 243 ~v~~~ 247 (398)
.+.++
T Consensus 281 ~~~~~ 285 (301)
T 2qpq_A 281 MVETD 285 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 35
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=83.86 E-value=5.7 Score=38.04 Aligned_cols=67 Identities=6% Similarity=0.104 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecC-----CCcHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS-----MADPRAQF 374 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~-----~~d~~v~~ 374 (398)
+..|.+..+|+||-.+++-+.++++|+|+..+...-.... +.|.+-++++.. .+...+++
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~~~L~~ 74 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---------------ARFFVRCVFHATDDADALRVDALRR 74 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEECC----CCHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---------------CceEEEEEEEccCcccCCCHHHHHH
Confidence 4567778899999999999999999999999998842221 234444565543 23456777
Q ss_pred HHHHHHH
Q 015945 375 ALGHLQE 381 (398)
Q Consensus 375 al~~L~~ 381 (398)
.++.+.+
T Consensus 75 ~f~~la~ 81 (292)
T 3lou_A 75 EFEPIAE 81 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 36
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=82.76 E-value=7.1 Score=37.60 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=48.6
Q ss_pred CceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecC---CCcHHHHH
Q 015945 298 PYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS---MADPRAQF 374 (398)
Q Consensus 298 ~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~---~~d~~v~~ 374 (398)
..+..|.+..+|+||-.+++-+.++++|+|+..+...-.+.. +.|..-++++.. .+...+++
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~---------------g~FfMr~~~~~~~~~~~~~~L~~ 84 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS---------------GWFFMRHEIRADTLPFDLDGFRE 84 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT---------------TEEEEEEEEEGGGSSSCHHHHHH
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC---------------CeEEEEEEEecCCCCCCHHHHHH
Confidence 445667788899999999999999999999999998843321 233334455442 23456777
Q ss_pred HHHHHHH
Q 015945 375 ALGHLQE 381 (398)
Q Consensus 375 al~~L~~ 381 (398)
.++.+.+
T Consensus 85 ~l~~la~ 91 (302)
T 3o1l_A 85 AFTPIAE 91 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 37
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=82.72 E-value=5.7 Score=34.63 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=39.5
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++. .|+..+..... ++..++..+.+..+++++|.+|++|+++..
T Consensus 117 ~g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 165 (242)
T 3del_B 117 QYRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLE 165 (242)
T ss_dssp GSSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEEC
T ss_pred CCCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEec
Confidence 35688875 57766665554 677888889999999999999999999886
No 38
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=81.38 E-value=8.2 Score=36.83 Aligned_cols=67 Identities=7% Similarity=0.166 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecC---CCcHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS---MADPRAQFAL 376 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~---~~d~~v~~al 376 (398)
+..|.+..+|+||-.+++-+.++++|+|+..+.+.-.... +.|.+-+.++.. .+...+++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES---------------GHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC---------------CceEEEEEEEcCCCCCCHHHHHHHH
Confidence 4456777899999999999999999999999998743321 233333445432 2345777777
Q ss_pred HHHHH
Q 015945 377 GHLQE 381 (398)
Q Consensus 377 ~~L~~ 381 (398)
+.+.+
T Consensus 71 ~~la~ 75 (288)
T 3obi_A 71 GVIAA 75 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 39
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=80.92 E-value=3.9 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=39.0
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCC-CccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPK-CETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~-~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++. .|+..+......++. .++....+..+++++|.+|++|+++..
T Consensus 108 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 108 KGKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred CCCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 45789885 466555445555555 788999999999999999999999876
No 40
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=80.31 E-value=11 Score=37.98 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHH
Q 015945 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGH 378 (398)
Q Consensus 299 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~ 378 (398)
....|.+...|.||.|.++-+.|+++|||+....++-... ..| -.+|+++. .+.-++++++
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~----------------~~y-~~~d~~~~--~~~~~~~~~~ 402 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE----------------VGY-LVMEADGV--GEASDAVLQE 402 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS----------------CEE-EEEEECCC--HHHHHHHHHH
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc----------------eEE-EEEEecCC--CCCcHHHHHH
Confidence 3567888889999999999999999999999888775321 223 35698732 1334567777
Q ss_pred HHHhcCc
Q 015945 379 LQEFATF 385 (398)
Q Consensus 379 L~~~~~~ 385 (398)
|+..-.-
T Consensus 403 l~~~~~~ 409 (416)
T 3k5p_A 403 IREIPGT 409 (416)
T ss_dssp HHTSTTE
T ss_pred HHhCCCE
Confidence 7755443
No 41
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=80.10 E-value=5 Score=40.09 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=46.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
...|++...|+||.+.++-+.|.++|||+......- ++ ..-+..+|++... +.-++++++|
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g----------------~~A~~vidvD~~~--~~~~~~l~~l 391 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA----------------QMGYVVIDIEADE--DVAEKALQAM 391 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS----------------SEEEEEEEEECCH--HHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC----------------CEEEEEEEcCCCC--CCCHHHHHHH
Confidence 445888889999999999999999999998766544 32 2345567998741 1234677777
Q ss_pred HH
Q 015945 380 QE 381 (398)
Q Consensus 380 ~~ 381 (398)
++
T Consensus 392 ~~ 393 (404)
T 1sc6_A 392 KA 393 (404)
T ss_dssp HT
T ss_pred hc
Confidence 75
No 42
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=79.69 E-value=8.4 Score=33.92 Aligned_cols=49 Identities=24% Similarity=0.126 Sum_probs=38.6
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
+..+|++. .|+..+..... ++..++....+.++++++|.+|++|+++..
T Consensus 138 ~g~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 186 (268)
T 3qax_A 138 QYSSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLE 186 (268)
T ss_dssp GSSCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEEC
T ss_pred CCCEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEec
Confidence 45688874 67766555543 667788889999999999999999999875
No 43
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=79.67 E-value=7.3 Score=40.16 Aligned_cols=73 Identities=14% Similarity=0.208 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
-..|++..+|+||.+.++.+.+.++|||+..+.---.... .+-...++++....++ +.+.|+++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~---------------~~a~~~i~vd~~~~~~-~l~~l~~~ 517 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG---------------PGATILLRLDQDVPDD-VRTAIAAA 517 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS---------------SCEEEEEEESSCCCHH-HHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC---------------CEEEEEEEECCCCCHH-HHHHHhcC
Confidence 3568888899999999999999999999998875332221 3567888898766433 33344444
Q ss_pred HHhcCceEEE
Q 015945 380 QEFATFLRVL 389 (398)
Q Consensus 380 ~~~~~~vkiL 389 (398)
.. ...++++
T Consensus 518 ~~-i~~v~~v 526 (529)
T 1ygy_A 518 VD-AYKLEVV 526 (529)
T ss_dssp HT-EEEEEEE
T ss_pred CC-ccEEEEE
Confidence 33 2344443
No 44
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.31 E-value=9.7 Score=36.29 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCC-CcHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASM-ADPRAQFALGH 378 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~-~d~~v~~al~~ 378 (398)
+..|.+..+|+||-.+++-+.++++|+|+..+........ +.|..-++++... +...+++.++.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS---------------SKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC---------------CeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4567778899999999999999999999999988743321 2333334554321 22366677766
Q ss_pred HHH
Q 015945 379 LQE 381 (398)
Q Consensus 379 L~~ 381 (398)
+.+
T Consensus 72 la~ 74 (287)
T 3nrb_A 72 VVE 74 (287)
T ss_dssp HHG
T ss_pred HHH
Confidence 654
No 45
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=78.95 E-value=3.4 Score=36.58 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=40.9
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++. .|+..+......++...+...++.++++++|.+|++|+++..
T Consensus 149 ~g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 149 AQKKVGAQ--KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp C-CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred CCCeEEEe--cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 45789884 677666666667778888999999999999999999999886
No 46
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=78.87 E-value=7 Score=37.26 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecC--CCcHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEAS--MADPRAQFALG 377 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~--~~d~~v~~al~ 377 (398)
+..|.+..+|+||-.+++-+.|+++|+|+..+.+.-.... +.|..-++++.. .+...+++.++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS---------------GRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC---------------CeeEEEEEEecCCCCCHHHHHHHHH
Confidence 3456777899999999999999999999999998842221 223333445432 23456777777
Q ss_pred HHHH
Q 015945 378 HLQE 381 (398)
Q Consensus 378 ~L~~ 381 (398)
.+.+
T Consensus 73 ~la~ 76 (286)
T 3n0v_A 73 ERSE 76 (286)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 6654
No 47
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=78.64 E-value=7.8 Score=34.00 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=29.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 015945 301 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 335 (398)
Q Consensus 301 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP 335 (398)
..|.+..+|+||-++++-+.|+.+|+|+..+.-.-
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~ 41 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM 41 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee
Confidence 44566779999999999999999999998766544
No 48
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=78.62 E-value=7.5 Score=34.65 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=54.2
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCC------CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhc--CC
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPK------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR--HR 181 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~------~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~--~~ 181 (398)
+..+|++. .|+..+......+.. .++....+.++++++|.+|++|+.+..-.. ...++.+ .+
T Consensus 136 ~g~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~--------~~~~~~~~~~~ 205 (259)
T 4dz1_A 136 NKYSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV--------YFTFKNKKKMP 205 (259)
T ss_dssp GGSCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH--------HHHHHHTSCCC
T ss_pred CCCEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH--------HHHHhccCCCc
Confidence 35689885 566555555556654 678889999999999999999999886321 1112222 34
Q ss_pred eEEEEEEEEeeeEeeecCCC
Q 015945 182 LHIVGEVQLVVNHCLLGLPG 201 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g 201 (398)
+.+.....-+...+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 206 IESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEEETT
T ss_pred eEeecccCCCceEEEEEeCC
Confidence 66665555556666666654
No 49
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=77.18 E-value=4.4 Score=38.90 Aligned_cols=50 Identities=20% Similarity=0.099 Sum_probs=38.1
Q ss_pred eEEEEEcCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEee
Q 015945 112 VRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 162 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 162 (398)
.+++..| .|+.+|+++..++ | +...+++.+..+++.+|.+|++|+++...
T Consensus 140 ~~~g~~g-~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 140 ISLANAG-IGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred eEEeCCC-CCcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 3455443 4888898876543 3 35568999999999999999999999864
No 50
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=77.11 E-value=4.2 Score=35.00 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=40.1
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++. .|+..+......++..++....+..+++++|.+|++|+++..
T Consensus 111 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 111 KGKKVGLE--NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCEEEEe--cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 35688884 576666555556777788889999999999999999999886
No 51
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=76.83 E-value=3.9 Score=36.38 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=41.7
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+......++..+++.+++..+++++|.+|++|+.+..
T Consensus 123 g~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 123 SANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 4688875 677777767778888899999999999999999999998875
No 52
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=76.78 E-value=3 Score=36.37 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+......++..++..+++..+++++|.+|++|+.+..
T Consensus 125 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIVN--PGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEEC--TTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEEc--CCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 5688874 677766666667888888999999999999999999999876
No 53
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=75.69 E-value=48 Score=30.28 Aligned_cols=108 Identities=15% Similarity=0.015 Sum_probs=65.1
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCCe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRL 182 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~l 182 (398)
...+|++.+.....-..++..+|. .++++.+.++.+..+|+.+|++|++..-- ...++.+. ..++
T Consensus 3 ~~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l 74 (241)
T 1xs5_A 3 ETVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDL 74 (241)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCE
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCE
Confidence 357899986543311233344663 47899999999999999999999986532 23444433 2467
Q ss_pred EEEEEEEEeeeEeeecCCCCCccCcc---EEEe--cHHHHHHHHHHHhh
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKEELK---RVFS--HPQALAQCEMTLSN 226 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~~I~---~V~S--Hpqal~QC~~fl~~ 226 (398)
.+++.+...- ..+.+.+-.+++|++ +|.- -|--....-.+|.+
T Consensus 75 ~~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~ 122 (241)
T 1xs5_A 75 VSVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEA 122 (241)
T ss_dssp EEEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHH
T ss_pred EEEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHH
Confidence 7777554332 355565545677772 4543 23333444456665
No 54
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=75.65 E-value=18 Score=31.47 Aligned_cols=93 Identities=13% Similarity=-0.012 Sum_probs=57.9
Q ss_pred EEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEE-EEe
Q 015945 113 RVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEV-QLV 191 (398)
Q Consensus 113 kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei-~l~ 191 (398)
+|++. .|+..+.....+ +.+++.+++.++++++|.+|++|+.+.... .....+... ..++.+.+.. ..+
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 177 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD-----YLVPIVAES-GGELMFVGDDVPLG 177 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH-----HHHHHHHHT-TTSSEEEEEEEECS
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH-----HHHHHHHhC-CCCeEEecCCCCCC
Confidence 89885 577666555544 577888999999999999999999988632 111111111 1467777753 333
Q ss_pred eeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 192 VNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 192 I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
...+++.+++ +|+-..+..++|.+
T Consensus 178 ~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 178 GGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp SCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 4455555543 34445555555554
No 55
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=74.51 E-value=11 Score=33.37 Aligned_cols=36 Identities=6% Similarity=-0.055 Sum_probs=30.0
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeee
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 335 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP 335 (398)
+.-|.+..+|+||-.+++-+.++.+|+|+..+.---
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~ 40 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC 40 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE
Confidence 344566779999999999999999999999776654
No 56
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=74.17 E-value=4.8 Score=36.89 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++ +.|+..+......+...+++...+..+++++|.+|++|+++++
T Consensus 164 gk~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 468887 4677666666667777788889999999999999999999986
No 57
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=73.82 E-value=26 Score=33.38 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=89.2
Q ss_pred cCCCCCceeEEEEEcCCCcHHHHHHHHh-------C-CCCccccCC-----CHHHHHHHHHcCCccEEEEeeccc-----
Q 015945 104 SSPDDGTKVRVAYQGLPGAYSEAAARKA-------Y-PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENS----- 165 (398)
Q Consensus 104 ~s~~~q~~~kVa~lGp~Gs~s~~AA~~~-------f-g~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS----- 165 (398)
+....+...|+++..|+|+....++..+ - |.+++..+. +..+++++|..|.+|++++.....
T Consensus 3 ~~~a~~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P 82 (327)
T 2hpg_A 3 AVFGAKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVK 82 (327)
T ss_dssp -CCCCSEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSG
T ss_pred cccccceEEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCc
Confidence 3334445688999888887666555432 1 234443332 246899999999999998864210
Q ss_pred -----------------------------cccchHH-hHHhhhc-CCeEEEEE-EEEeeeEeeecCCC-CCccCcc--EE
Q 015945 166 -----------------------------VGGSIHR-NYDLLLR-HRLHIVGE-VQLVVNHCLLGLPG-VLKEELK--RV 210 (398)
Q Consensus 166 -----------------------------~~G~V~~-tld~L~~-~~l~I~~E-i~l~I~h~Ll~~~g-~~l~~I~--~V 210 (398)
.+|.+.. ..+.+.+ .++++.+- ......+ +..++. .+++|++ +|
T Consensus 83 ~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~-~~~~~pI~s~~DLkG~Ki 161 (327)
T 2hpg_A 83 DIGVMNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRH-FVTNKPIRKPEDLNGLRI 161 (327)
T ss_dssp GGGGGGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EEESSCCSSGGGGTTCEE
T ss_pred cHHhccCCeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCccee-EecCCCCCCHHHHCCCEE
Confidence 1222111 1122334 67888776 4444433 333333 3566765 56
Q ss_pred EecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccc
Q 015945 211 FSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQ 274 (398)
Q Consensus 211 ~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~ 274 (398)
..-+-. -...+++..++..++.. .++....+..+ .-+ |+..+.......++.-+.+.+.
T Consensus 162 Rv~~~~--~~~~~~~alGa~pv~m~-~~Evy~ALq~G-~VD-g~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 162 RTPGAP--AWQESIRSLGAIPVAVN-FGEIYTAVQTR-AVD-GAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp ECCSSH--HHHHHHHHHTSEEECCC-GGGHHHHHHTT-SCS-EEEECHHHHHHTTGGGTCCEEE
T ss_pred EeCCCH--HHHHHHHHcCCEeeecC-HHHHHHHHHcC-Cee-EEECCHHHHHHcChhhhccEEE
Confidence 654322 23567888888776553 23444444443 223 6666665554455544444443
No 58
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=73.56 E-value=57 Score=30.11 Aligned_cols=142 Identities=17% Similarity=0.057 Sum_probs=78.9
Q ss_pred CceeEEEEEcCCCcHHHHHHHHhC-----C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCe
Q 015945 109 GTKVRVAYQGLPGAYSEAAARKAY-----P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 182 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~s~~AA~~~f-----g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l 182 (398)
....+|++......+.-.-...+| | ++++....++.++++++.+|++|++++... ..........++
T Consensus 28 ~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~ 100 (324)
T 3ksx_A 28 PAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDI-------PPLFAQAAGADL 100 (324)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESH-------HHHHHHHTTCCE
T ss_pred CCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCH-------HHHHHHhcCCCE
Confidence 456899998543222111112233 3 467788889999999999999999986432 111222233467
Q ss_pred EEEEEEEE-eeeEeeecCCCC---CccCcc--EEEecHHH--HHHHHHHHhhcC-----CeEEecCCHHHHHHHHHhcCC
Q 015945 183 HIVGEVQL-VVNHCLLGLPGV---LKEELK--RVFSHPQA--LAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGE 249 (398)
Q Consensus 183 ~I~~Ei~l-~I~h~Ll~~~g~---~l~~I~--~V~SHpqa--l~QC~~fl~~~~-----~~~v~~~STA~Aa~~v~~~~~ 249 (398)
.+++-... +-...++++++. +++|++ +|..-+-. ......+|.+.+ ++.+.. +.+++...+..+ .
T Consensus 101 ~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G-~ 178 (324)
T 3ksx_A 101 LYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG-Q 178 (324)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT-C
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC-C
Confidence 77765432 223567766543 344543 56554322 223455776644 345554 677777777664 3
Q ss_pred CCeEEEcCHH
Q 015945 250 RDTGAVASAQ 259 (398)
Q Consensus 250 ~~~AAI~s~~ 259 (398)
-+.+.+....
T Consensus 179 vDa~~~~~p~ 188 (324)
T 3ksx_A 179 VDAWAIWDPW 188 (324)
T ss_dssp CSEEEEETTH
T ss_pred CCEEEEccHH
Confidence 3443343333
No 59
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=73.09 E-value=13 Score=33.50 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC----CCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY----PKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f----g~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+.....++ ...+++.+.+..+++++|.+|++|+++..
T Consensus 130 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~ 182 (287)
T 2vha_A 130 GKAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMD 182 (287)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeC
Confidence 4688874 6776655554443 25678889999999999999999999875
No 60
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=73.01 E-value=60 Score=30.18 Aligned_cols=170 Identities=10% Similarity=0.003 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC--------CCCccccCC-----CHHHHHHHHHcCCccEEEEeeccccccc--------
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENSVGGS-------- 169 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f--------g~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS~~G~-------- 169 (398)
..|++...|+|+..+.++..+- |.+++..+. +..+++++|..|.+|++++..-. ..|.
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhc
Confidence 3678888888887666665321 334443333 34799999999999999886321 0000
Q ss_pred -----------------hHHhHH-hhhcCCeEEEEEEEEeeeEeeecCCC-CCccCcc--EEEecHHHHHHHHHHHhhcC
Q 015945 170 -----------------IHRNYD-LLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLG 228 (398)
Q Consensus 170 -----------------V~~tld-~L~~~~l~I~~Ei~l~I~h~Ll~~~g-~~l~~I~--~V~SHpqal~QC~~fl~~~~ 228 (398)
..+.++ .+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -..+++..+
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 011111 3345688887654443333 444333 3556665 45542 222 256788789
Q ss_pred CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCC-ceEEEEEec
Q 015945 229 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDN-VTRFLILAR 288 (398)
Q Consensus 229 ~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N-~TRF~vi~~ 288 (398)
+..++. +.++....+..+ .-+ |+..+.......++.=+.+.+...... .+-++++++
T Consensus 157 a~pv~~-~~~E~y~ALq~G-~vD-g~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 157 AQPVTV-QQAELAQAMATG-VID-SYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp CEEEEC-CGGGHHHHHHTT-SCS-EEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred Ccceec-CHHHHHHHHhcC-eee-EEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 887765 334444444443 233 557777666666665444444433222 334444544
No 61
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=71.95 E-value=27 Score=29.22 Aligned_cols=137 Identities=16% Similarity=0.054 Sum_probs=72.1
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
.+..+|++...-+.+ ..... ++.++++++. ...+..++.+.+.+|++|+|++.-..... +
T Consensus 7 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~-------------~-- 71 (222)
T 4ab5_A 7 AGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQN-------------G-- 71 (222)
T ss_dssp TEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCT-------------T--
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcC-------------C--
Confidence 456677765433322 12211 1235655432 23344578899999999999985332111 1
Q ss_pred EEEEEEEeeeEeeecCCCC--------CccCc---cEEE-ecH-HHHHHHHHHHhhcCC--eEEecCCHHHHHHHHHhcC
Q 015945 184 IVGEVQLVVNHCLLGLPGV--------LKEEL---KRVF-SHP-QALAQCEMTLSNLGI--VRISADDTAGAAQMVASIG 248 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g~--------~l~~I---~~V~-SHp-qal~QC~~fl~~~~~--~~v~~~STA~Aa~~v~~~~ 248 (398)
+..+.......++++.++- +++++ .-|. +.. ....+..+|+.+.+. ....++|...+.++|+.+
T Consensus 72 ~~~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g- 150 (222)
T 4ab5_A 72 ISFQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR- 150 (222)
T ss_dssp EEEEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT-
T ss_pred eEEEEeecCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC-
Confidence 2223333344455544432 23333 2333 221 222455666666332 256777888888888865
Q ss_pred CCCeEEEcCHHhHHH
Q 015945 249 ERDTGAVASAQAAEI 263 (398)
Q Consensus 249 ~~~~AAI~s~~aA~~ 263 (398)
...+|.+...+..
T Consensus 151 --~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 151 --RGIAALPYWTVMP 163 (222)
T ss_dssp --SCBEEEEHHHHHH
T ss_pred --CeEEEcchHHhHH
Confidence 3467777776653
No 62
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=71.50 E-value=4 Score=36.48 Aligned_cols=99 Identities=7% Similarity=-0.025 Sum_probs=57.1
Q ss_pred ceeEEEEEcCCCcHHHHHHHHh-------CCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhc-CC
Q 015945 110 TKVRVAYQGLPGAYSEAAARKA-------YPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR-HR 181 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~-------fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~-~~ 181 (398)
...+|++. .|+..+.....+ ++..+++.+.+..+++++|.+|++|+++..-. .....+..... .+
T Consensus 126 ~g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~~~~~~ 198 (268)
T 3hv1_A 126 AGKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRV-----YANYYLEKSGVLDQ 198 (268)
T ss_dssp TTCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHH-----HHHHHHHHTTCGGG
T ss_pred CCCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHH-----HHHHHHHhCCCCCc
Confidence 45688885 565544332221 22357788999999999999999999988633 11111111111 34
Q ss_pred eEEEEEEEEeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh
Q 015945 182 LHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 226 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~ 226 (398)
+.+.+...-+...+++.+++ +|+-..+..++|.+
T Consensus 199 l~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 199 YNVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp EEEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred eEECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 66665544344455554433 35555555555554
No 63
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=71.30 E-value=21 Score=30.36 Aligned_cols=117 Identities=13% Similarity=-0.028 Sum_probs=66.9
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----CCccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-----~~l~~I~ 208 (398)
.++++...+|.++++++.+|++|+++.++.-+.+ .. ....+.. ..-+.....+++.+++ .++++++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~---~~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPE-----RA---AIEGITF-TQPYFSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH-----HH---TSTTEEE-CCCCEEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcc-----cc---ccceeEE-ccceeecCeEEEEECCCCCCCCCHHHhC
Confidence 5678888899999999999999998765442211 00 0001100 0011222344444432 1334442
Q ss_pred --EEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 --RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 --~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....- .. ...+|.+.+...+.+.|..++.+++..+. -.|++++...+..
T Consensus 116 g~~v~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRD-TT-AVDWANFYQADVRETNNLTAAITLLQKKQ--VEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETT-SH-HHHHHHHTTCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CCeEEEECC-cc-HHHHHHHcCCCeEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 4433221 11 13466666788889999999999998753 3477777665543
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=70.70 E-value=27 Score=29.50 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=49.8
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
...+|++. .|+..+...+. .+.++....+..+++++|.+|++|+++.+-.. ....+.......+.+.+...
T Consensus 111 ~g~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2pyy_A 111 PGKVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-----LLFYAANEGKGKVEIVGSIL 181 (228)
T ss_dssp TTCEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-----HHHHHHTTTTTTEEEEEEEE
T ss_pred CCCeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-----HHHHHHhCCCCcEEEecccc
Confidence 34688874 55554443332 24567888999999999999999999987321 11111111112567766554
Q ss_pred EeeeEeeecCCC
Q 015945 190 LVVNHCLLGLPG 201 (398)
Q Consensus 190 l~I~h~Ll~~~g 201 (398)
-+..++++.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (228)
T 2pyy_A 182 REESYGIILPNN 193 (228)
T ss_dssp EEEEECCEECTT
T ss_pred cceeEEEEEeCC
Confidence 444556655543
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=69.05 E-value=5.3 Score=35.93 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=39.1
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCC-CCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYP-KCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg-~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+......++ ..++..+.+..+++++|.+|++|+++.+
T Consensus 147 g~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 147 GKTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp TSCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 4678875 57766655665667 5677888999999999999999999986
No 66
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=69.00 E-value=33 Score=30.51 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=65.9
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC----CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I~- 208 (398)
.+++++..+|.++++++.+|++|+.. ++..+.+-. ..+.. ..-+......++.+++. ++++++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r~----------~~~~f-s~p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSARE----------SFLSF-SRPYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGGT----------TTEEE-CSCSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhhh----------cceEe-chhhccCceEEEEECCCCCCCCHHHHCC
Confidence 46777788999999999999999954 444332210 01110 11112233455554441 233332
Q ss_pred -EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015945 209 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 209 -~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~ 262 (398)
+|....- .. -..+|.+ ++++++.+.|..++.+++..+. -.|+|++...+.
T Consensus 140 ~~i~v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~Gr--vDa~i~~~~~~~ 192 (267)
T 3mpk_A 140 RTVALVRN-SA-AIPLLQRRYPQAKVVTADNPSEAMLMVANGQ--ADAVVQTQISAS 192 (267)
T ss_dssp CEEEEETT-CT-HHHHHHHHCTTSEEEEESSHHHHHHHHHHTS--CSEEEEEHHHHH
T ss_pred CEEEEeCC-ch-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 3433321 11 2345555 4788999999999999998763 347777766554
No 67
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=68.74 E-value=9.6 Score=33.14 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=65.7
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCc--c
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I--~ 208 (398)
.++++.. +|.++++++.+|++|+++.++..+.+.. . .+.. ..-+.....+++.+++. +++++ +
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~f-s~p~~~~~~~~~~~~~~~~~~~~dL~g~ 111 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDERK-----K-----HFIF-SLPYMESNSQYITTVDSKISTFDDLHGK 111 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG-----G-----TCEE-CCCSBCCEEEEEEETTCSCCSGGGGTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh-----c-----ccee-eeeeeecceEEEEECCCCCCCHHHhCCC
Confidence 4566766 7999999999999998875544332211 0 0000 00111233455555442 23333 2
Q ss_pred EEEecHHHHHHHHHHHhh-cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~-~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|.... .-.....+.+. ++...+.+.|..++.+++..+. -.|++.....+..
T Consensus 112 ~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 164 (237)
T 3kzg_A 112 KIGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQ--VDASLMDYEAAKY 164 (237)
T ss_dssp EEEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCC--CCEEEeCcHHHHH
Confidence 443322 22223334444 4678889999999999998753 3477777666554
No 68
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=68.61 E-value=7.6 Score=33.62 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC--CCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY--PKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f--g~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+......+ ...++....+..+++++|.+|++|+++..
T Consensus 111 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 111 GKHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp TCEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 4678874 6776655555566 35678889999999999999999999886
No 69
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=68.07 E-value=25 Score=29.69 Aligned_cols=114 Identities=10% Similarity=-0.073 Sum_probs=65.0
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC----CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I~- 208 (398)
++++... +|.++++++.+|++|+++..+..+.+ ....+.-.. -......+++.+++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~~~~------p~~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITITDE-----RKKAIDFSD------GYYKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHH-----HHTTSEECS------CCEEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHH-----HhCcccccc------chhcCceEEEEeCCCCCCCCHHHhCC
Confidence 4566655 79999999999999998765432211 001111011 111223455554432 234442
Q ss_pred -EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 -~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....- .. ...||.+ ++...+.+.|..++.+++..+. -.|++++...+..
T Consensus 110 ~~i~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSG-TG-SVDYAKANIKTKDLRQFPNIDNAYMELGTNR--ADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETT-SH-HHHHHHHHCCCSEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CEEEEEcC-Cc-HHHHHHHhCCCceEEEeCCHHHHHHHHHcCC--cCEEEeCcHHHHH
Confidence 4544322 11 2456666 4678888999999999998753 3477777665543
No 70
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=68.05 E-value=77 Score=29.39 Aligned_cols=156 Identities=12% Similarity=0.001 Sum_probs=85.0
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC--------CCCccccCC-----CHHHHHHHHHcCCccEEEEeeccccccc--------
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENSVGGS-------- 169 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f--------g~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS~~G~-------- 169 (398)
..|++..-|+|+..+.++..+- |.+++..+. +-.+++++|..|.+|++.+..-.. .|.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSAL-GNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGG-TTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhh-hccCccccccc
Confidence 4678888888876666554321 234443333 347899999999999998863211 000
Q ss_pred -----------------hHHhH-HhhhcCCeEEEEEEEEeeeEeeecCCC-CCccCcc--EEEecHHHHHHHHHHHhhcC
Q 015945 170 -----------------IHRNY-DLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLG 228 (398)
Q Consensus 170 -----------------V~~tl-d~L~~~~l~I~~Ei~l~I~h~Ll~~~g-~~l~~I~--~V~SHpqal~QC~~fl~~~~ 228 (398)
..+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -.++++..+
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 01111 23345688877654443333 444333 3556665 45542 222 246788889
Q ss_pred CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccc
Q 015945 229 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQ 274 (398)
Q Consensus 229 ~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~ 274 (398)
+..++. +.++.-..+..+ .-+ |+..+.......++.-+.+.+.
T Consensus 158 a~pv~~-~~~E~y~ALq~G-~vD-g~~~~~~~~~~~~~~ev~k~~~ 200 (301)
T 2pfy_A 158 AVPTTV-QTPEVPQAFSTG-VID-AMLTSPATGVDSQAWDYVKYYY 200 (301)
T ss_dssp SEEEEC-CGGGHHHHHHTT-SCS-BEEECHHHHHHTTGGGTCCEEE
T ss_pred Ccceec-cHHHHHHHHhcc-eee-eEecCccccccccHHHHhhhhc
Confidence 887765 334444444443 233 5566666655556544444443
No 71
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=66.96 E-value=17 Score=32.99 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=37.2
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++ +.|+........+ ..++....+..+++.+|.+|++|+++++
T Consensus 163 ~G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~ 210 (283)
T 2yln_A 163 KGVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLND 210 (283)
T ss_dssp TTSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEE
T ss_pred CCCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEec
Confidence 4568887 5677655544433 4677888999999999999999999986
No 72
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=66.47 E-value=18 Score=35.46 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=30.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 015945 301 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQ 336 (398)
Q Consensus 301 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~ 336 (398)
..|.++-+|+||-...+-+.++.+|+|+..+.....
T Consensus 13 ~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~ 48 (415)
T 3p96_A 13 VLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI 48 (415)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE
Confidence 345566689999999999999999999999998753
No 73
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=65.57 E-value=14 Score=32.01 Aligned_cols=114 Identities=15% Similarity=0.067 Sum_probs=68.5
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEE--eeeEeeecCCCC---CccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPGV---LKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l--~I~h~Ll~~~g~---~l~~I~ 208 (398)
+++++.. +|.+++.++.+|++|+++-.+..+- + ....+.. .-+. ....+++.+++. ++++++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~--------~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMSITP--------S--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBBCCH--------H--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCcCCH--------H--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 4677777 8999999999999999763332111 1 1112222 3333 445566665442 334442
Q ss_pred --EEEecHHHHHHHHHHHhh-cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015945 209 --RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 264 (398)
Q Consensus 209 --~V~SHpqal~QC~~fl~~-~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~y 264 (398)
+|.... .-.. ..++.+ ++..++.+.|..++.+++..+. -.|+|++...+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHGK--SPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 333222 2122 334544 5788888999999999998753 44788877766644
No 74
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=65.44 E-value=9.9 Score=32.54 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++. .|+..+.....+ ..+++.+.+..+++++|.+|++|+++..
T Consensus 116 g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 162 (233)
T 1ii5_A 116 NKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFD 162 (233)
T ss_dssp TCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeC
Confidence 4688874 566554444433 4577888999999999999999999886
No 75
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=62.75 E-value=10 Score=33.39 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCcHHHHHHHHh-CCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKA-YPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~-fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++ ..|+..+.....+ +...++....+..+++++|.+|++|+++..
T Consensus 124 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 124 DAKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp TCCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred CceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 567887 4677655544433 344577889999999999999999999886
No 76
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=62.35 E-value=66 Score=26.59 Aligned_cols=136 Identities=16% Similarity=0.064 Sum_probs=71.1
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
++..+|++...-+.+ ..... +..++++++. ...+..++.+.+.+|++|+|++.-.....+
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~--------------- 67 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPG--------------- 67 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTT---------------
T ss_pred CCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCC---------------
Confidence 456778876443322 11111 2245666653 345677899999999999999975422111
Q ss_pred EEEEEEEeeeEeeecCC--------CCCccCc---cEEEecH-H-HHHHHHHHHhh-----c--C-CeEEecCCHHHHHH
Q 015945 184 IVGEVQLVVNHCLLGLP--------GVLKEEL---KRVFSHP-Q-ALAQCEMTLSN-----L--G-IVRISADDTAGAAQ 242 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~--------g~~l~~I---~~V~SHp-q-al~QC~~fl~~-----~--~-~~~v~~~STA~Aa~ 242 (398)
+..+.......++++.+ ..+++++ .-|...+ . -..+...++.+ . . .....++|...+.+
T Consensus 68 ~~~~~l~~~~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T 3jv9_A 68 IVTEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRH 147 (219)
T ss_dssp EEEEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHH
T ss_pred eeEEEeeeceEEEEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHH
Confidence 11122222333333332 2333443 3343322 1 22445555533 1 1 22346778888888
Q ss_pred HHHhcCCCCeEEEcCHHhHH
Q 015945 243 MVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 243 ~v~~~~~~~~AAI~s~~aA~ 262 (398)
+|..+ ...|+.+...+.
T Consensus 148 ~v~~g---~gi~~~p~~~~~ 164 (219)
T 3jv9_A 148 MVASG---LAISVLPATALT 164 (219)
T ss_dssp HHHHT---SCEEEEEGGGCC
T ss_pred HHHcC---CcEEehhHHHHH
Confidence 88875 346777766543
No 77
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=62.28 E-value=13 Score=37.65 Aligned_cols=68 Identities=10% Similarity=0.202 Sum_probs=44.1
Q ss_pred eEEEE--EEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHH
Q 015945 300 KTSIV--FTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALG 377 (398)
Q Consensus 300 ktsi~--f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~ 377 (398)
.+... |.+.|+||.|.++-++|.++||++..+-.++..... . .--..++- -...+.+++++++
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~------------~-~~~~v~~t--h~~~e~~~~~~~~ 421 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE------------E-QVDIILLT--HVTLEKNVNAAIA 421 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC-------------------CEEEEEEE--CSEEHHHHHHHHH
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC------------C-CceEEEEe--ccCCHHHHHHHHH
Confidence 45544 566799999999999999999999988777643110 0 11122222 2235678999999
Q ss_pred HHHHh
Q 015945 378 HLQEF 382 (398)
Q Consensus 378 ~L~~~ 382 (398)
+|+..
T Consensus 422 ~~~~~ 426 (444)
T 3mtj_A 422 KIEAL 426 (444)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 99864
No 78
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=62.20 E-value=91 Score=28.18 Aligned_cols=138 Identities=16% Similarity=0.021 Sum_probs=71.6
Q ss_pred ceeEEEEEcCCCcHHHHHH-----HHhC-C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCe
Q 015945 110 TKVRVAYQGLPGAYSEAAA-----RKAY-P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 182 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA-----~~~f-g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l 182 (398)
+..+|++......+ ..+. .+.+ | ++++....+..++++++.+|++|+++..... .....-...++
T Consensus 3 ~~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~-------~~~~~~~g~~~ 74 (308)
T 2x26_A 3 EALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIP-------PIFAQAAGADL 74 (308)
T ss_dssp SEEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSHH-------HHHHHHTTCCE
T ss_pred eEEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCcH-------HHHHHhcCCCe
Confidence 45788887432212 1111 1233 3 4667778888899999999999999864321 11111112345
Q ss_pred EEEEEEEE-eeeEeeecCCCC---CccCcc--EEEecHH--HHHHHHHHHhhcCC-----eEEecCCHHHHHHHHHhcCC
Q 015945 183 HIVGEVQL-VVNHCLLGLPGV---LKEELK--RVFSHPQ--ALAQCEMTLSNLGI-----VRISADDTAGAAQMVASIGE 249 (398)
Q Consensus 183 ~I~~Ei~l-~I~h~Ll~~~g~---~l~~I~--~V~SHpq--al~QC~~fl~~~~~-----~~v~~~STA~Aa~~v~~~~~ 249 (398)
.+++.... +...+++++++. +++|++ +|...+- .......+|++.++ +.+ ..+..++.+.+..+.
T Consensus 75 ~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~- 152 (308)
T 2x26_A 75 VYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGN- 152 (308)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTS-
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCC-
Confidence 55443321 234566666543 344443 5554332 12234566766443 223 345667777777643
Q ss_pred CCeEEEcCH
Q 015945 250 RDTGAVASA 258 (398)
Q Consensus 250 ~~~AAI~s~ 258 (398)
-+ |++.+.
T Consensus 153 vD-a~~~~~ 160 (308)
T 2x26_A 153 VD-AWAIWD 160 (308)
T ss_dssp SS-EEEEET
T ss_pred CC-EEEecc
Confidence 34 444443
No 79
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=60.88 E-value=1.1e+02 Score=28.52 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=75.7
Q ss_pred ceeEEEEEcCCCcHHHHHHHH---hCC----CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhh-hcCC
Q 015945 110 TKVRVAYQGLPGAYSEAAARK---AYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRHR 181 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~---~fg----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L-~~~~ 181 (398)
...+|++....+...-..|.. +|. ++++....++.++++++.+|++|+++.... .++... ...+
T Consensus 52 ~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~ 123 (341)
T 3un6_A 52 QVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIE--------LAMKSKQKGSN 123 (341)
T ss_dssp CEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHH--------HHHHHHHTTCC
T ss_pred ceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchH--------HHHHHHHCCCC
Confidence 457888864323222233332 553 367888999999999999999999987643 122211 2335
Q ss_pred eEEEEEEEEeeeEeeecCCCC---CccCc---cEEEecHH---HHHHHHHHHhhcCC-----eEEecCCHHHHHHHHHhc
Q 015945 182 LHIVGEVQLVVNHCLLGLPGV---LKEEL---KRVFSHPQ---ALAQCEMTLSNLGI-----VRISADDTAGAAQMVASI 247 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~---~l~~I---~~V~SHpq---al~QC~~fl~~~~~-----~~v~~~STA~Aa~~v~~~ 247 (398)
+.+++-.. +-...++++++. +++|+ ++|..... .....+.+|++.++ +.+.. +.+++...+..+
T Consensus 124 ~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G 201 (341)
T 3un6_A 124 IKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH 201 (341)
T ss_dssp CEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT
T ss_pred eEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC
Confidence 66665432 234566666643 44566 46654331 11223457776443 44555 455666666654
Q ss_pred CCCCeEEEc
Q 015945 248 GERDTGAVA 256 (398)
Q Consensus 248 ~~~~~AAI~ 256 (398)
.-+ |++.
T Consensus 202 -~vD-a~~~ 208 (341)
T 3un6_A 202 -RIT-GYSV 208 (341)
T ss_dssp -SCS-EEEE
T ss_pred -CCC-EEEe
Confidence 234 4444
No 80
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=59.87 E-value=11 Score=36.02 Aligned_cols=50 Identities=8% Similarity=-0.086 Sum_probs=38.3
Q ss_pred eEEEEEcCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEee
Q 015945 112 VRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 162 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 162 (398)
.+++..| .|+.+|+++..++ | +...+++.+..+++.+|.+|++|+++...
T Consensus 144 ~~~g~~g-~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 144 YSYGSSG-TCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp CEEEESC-TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred EEEeCCC-CCcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 4555443 4888898886544 3 34568999999999999999999998864
No 81
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=58.08 E-value=41 Score=28.82 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=36.1
Q ss_pred ceeEEEEEcCCCcHHHHHHHH---hCCC--Cccc-cCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARK---AYPK--CETV-PCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~---~fg~--~~~~-~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
...+|++ ..|+..+..... .++. .++. ...+..+++++|.+|++|+++..
T Consensus 114 ~g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 114 GGKSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp TTCEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred CCCEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 3578988 467766555554 4553 3444 33699999999999999999886
No 82
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=57.92 E-value=82 Score=26.30 Aligned_cols=114 Identities=9% Similarity=0.002 Sum_probs=66.1
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcC-CeEEEEEEEEeeeEeeecCCC-------CCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH-RLHIVGEVQLVVNHCLLGLPG-------VLKE 205 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~-~l~I~~Ei~l~I~h~Ll~~~g-------~~l~ 205 (398)
++++....++.++++++.+|++|+++-++..+. +....+.-. .+. ....+++.+++ .+++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-----~r~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITA-----EREQNFDFSLPIF-------ASGLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCH-----HHHHHSEECSCSE-------EEEEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCH-----HHHccceecccch-------hcceEEEEECCccccCCcCCHH
Confidence 577888889999999999999999864332111 111111111 221 11233333322 1334
Q ss_pred Ccc--EEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 206 ELK--RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 206 ~I~--~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
|++ +|...... . ...+|.++++..+.+.|..++.+++..+. -.|++.+...+..
T Consensus 109 dL~g~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~~~~~~ 164 (228)
T 2pyy_A 109 DLPGKVVATTAGS-T-AATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDAPVLLF 164 (228)
T ss_dssp GCTTCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred HcCCCeEEEEcCc-H-HHHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 432 34432221 1 34677777888889999999999998753 3377777665543
No 83
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=57.72 E-value=1.2e+02 Score=28.05 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=68.2
Q ss_pred eeEEEEEc-CCCcHHHHHHHHh---CC-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCCe
Q 015945 111 KVRVAYQG-LPGAYSEAAARKA---YP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRL 182 (398)
Q Consensus 111 ~~kVa~lG-p~Gs~s~~AA~~~---fg-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~l 182 (398)
..+||+.+ |.....+.+...+ .| .++++.+.++.+.-.|+.+|++|....-.. +.++.+. .++|
T Consensus 4 ~ikVG~~~~p~~~i~~~~~~~l~~~~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyl~~~~k~~g~~l 75 (240)
T 3tqw_A 4 MVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHL--------PYLKAQIEMRGYKI 75 (240)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHCCCE
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHhcCCeEEEEEeCChHhHHHHHHcCCcCeeccCCH--------HHHHHHHHHCCCCE
Confidence 57899984 4333333332211 24 678999999999999999999999977543 4455443 3567
Q ss_pred EEEEEEEEeeeEeeecCCCCCccCcc---EEE--ecHHHHHHHHHHHhhcC
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKEELK---RVF--SHPQALAQCEMTLSNLG 228 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~~I~---~V~--SHpqal~QC~~fl~~~~ 228 (398)
..++.+.+.- ..|.+.+-.++++++ +|. .-|--.+..-..|++.+
T Consensus 76 v~v~~~~~~p-~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aG 125 (240)
T 3tqw_A 76 VSIGKTFVYP-MGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQ 125 (240)
T ss_dssp EEEEEEEECC-CEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeeccccc-eEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCC
Confidence 7777765543 577777666778887 444 23333344444555533
No 84
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=57.00 E-value=36 Score=29.47 Aligned_cols=111 Identities=8% Similarity=-0.031 Sum_probs=67.7
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC--CccCccEEE
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV--LKEELKRVF 211 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~--~l~~I~~V~ 211 (398)
+++++.. +|.+++.++.+|++|+++.++..+-+ .+..+... .-++.....++.+++. ++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~----------r~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSITDE----------RDEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH----------HHTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcCCHH----------HHhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 4666664 89999999999999987655432211 11122222 2344455666666542 3344 333
Q ss_pred ecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015945 212 SHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 212 SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~ 262 (398)
... ... -..+|.+.+++.+.+.|..++.+++..+. -.|+|+....+.
T Consensus 111 v~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~ 157 (232)
T 3i6v_A 111 AQT-ATI-QAGYIAESGATLVEFATPEETIAAVRNGE--ADAVFADRDYLV 157 (232)
T ss_dssp EET-TSH-HHHHHHHSSSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred Eec-Cch-HHHHHHhcCCeEEEeCCHHHHHHHHHcCC--cCEEEEChHHHH
Confidence 322 111 23456555788899999999999998753 347777776664
No 85
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=56.56 E-value=25 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.5
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 015945 306 TLEEGPGMLFKALAVFALRDINLTKIESRPQ 336 (398)
Q Consensus 306 ~~~~~pGaL~~~L~~F~~~~INLt~IESRP~ 336 (398)
.++++||.+.++++.|+++|||+-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5789999999999999999999999965444
No 86
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=56.54 E-value=13 Score=38.33 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=51.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHH
Q 015945 300 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHL 379 (398)
Q Consensus 300 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L 379 (398)
+..+.+.++++||+|.++++.+. +-|++.++=|.+ .. ..-..+|.++........+++++.|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~~--------------~~~~~~~~~e~~~~~~~~~~~~~~l 399 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--DA--------------KNACIFVGVRLSRGLEERKEILQML 399 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--CS--------------SBCEEEEEEECSSTHHHHHHHHHHH
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--CC--------------CeEEEEEEEEeCCcHHHHHHHHHHH
Confidence 56788899999999999999887 789999998832 11 2345677777643247788888888
Q ss_pred HHhcCce
Q 015945 380 QEFATFL 386 (398)
Q Consensus 380 ~~~~~~v 386 (398)
++..-.+
T Consensus 400 ~~~g~~~ 406 (514)
T 1tdj_A 400 NDGGYSV 406 (514)
T ss_dssp TSSSCEE
T ss_pred HhCCCCe
Confidence 7664443
No 87
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=56.09 E-value=55 Score=30.06 Aligned_cols=110 Identities=15% Similarity=-0.006 Sum_probs=72.5
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEe---eeEeeecCCCCCccCccEE
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLV---VNHCLLGLPGVLKEELKRV 210 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~---I~h~Ll~~~g~~l~~I~~V 210 (398)
.+.+.+..+++..+.+|.+|++|++|+-.- .+-..+.+.++.++-++--+ -.|.++.+++ +...|++|
T Consensus 45 ~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~--------aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~~ikrV 115 (231)
T 2ozz_A 45 PFYYAHMRGADIRVECLLNGVYDMAVVSRL--------AAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESGNVKRV 115 (231)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGGGCCEE
T ss_pred cEEEEEccChHHHHHHHHcCCCCEEEEecc--------cchhhhcccCeEEEEEcCCCccccCeEEEEeCC-CccccEEE
Confidence 356788889999999999999999998543 33333333455555444333 2356666555 23567899
Q ss_pred EecHHHHHHHHHHHhh---cCCeEEec-CCHHHHHHHHHhcCCCCeEEEc
Q 015945 211 FSHPQALAQCEMTLSN---LGIVRISA-DDTAGAAQMVASIGERDTGAVA 256 (398)
Q Consensus 211 ~SHpqal~QC~~fl~~---~~~~~v~~-~STA~Aa~~v~~~~~~~~AAI~ 256 (398)
--.+-...|+ ||.+ .+.++..+ .+.+++.+.+..+. -+ |+|.
T Consensus 116 Gvd~gS~dq~--~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~-ID-A~Iw 161 (231)
T 2ozz_A 116 GLDSRSADQK--IMTDVFFGDSDVERVDLSYHESLQRIVKGD-VD-AVIW 161 (231)
T ss_dssp EECTTCHHHH--HHHHHHHTTSCCEEEECCHHHHHHHHHHTS-CC-EEEE
T ss_pred EecCCChhHH--HHHhhhcCCCeEEEEECCHHHHHHHHHcCC-cc-EEEE
Confidence 8888777766 3333 35555556 78888888888753 34 6665
No 88
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=55.39 E-value=10 Score=32.63 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.5
Q ss_pred eEEEEEE-eCCCcchHHHHHHHHHhCCceeeeeeee
Q 015945 300 KTSIVFT-LEEGPGMLFKALAVFALRDINLTKIESR 334 (398)
Q Consensus 300 ktsi~f~-~~~~pGaL~~~L~~F~~~~INLt~IESR 334 (398)
-+.|.+. ++++||.+.++++.|+++|||+-.|-+-
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3444333 7899999999999999999999998753
No 89
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=54.89 E-value=20 Score=31.44 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=40.0
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHH
Q 015945 306 TLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQ 380 (398)
Q Consensus 306 ~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~ 380 (398)
.++++||.+.++++.|+++|||+-.|-.-.+.... ......|.|+-+ +-.+..++|+++.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~------------g~~~isftv~~~---~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVED------------GKTDITFTCSRD---VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTT------------CEEEEEEEEETT---THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccC------------CccEEEEEEehh---HHHHHHHHHHHHH
Confidence 57899999999999999999999998643222000 012467777642 1245566676654
No 90
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=54.82 E-value=98 Score=26.22 Aligned_cols=144 Identities=16% Similarity=0.047 Sum_probs=69.2
Q ss_pred CceeEEEEEcCCCc--HHHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGA--YSEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs--~s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
.+..+|++...-+. +..... +..++++++. ...+..++.+.+.+|++|+|++.-.....+... ..|.+..+.
T Consensus 29 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 105 (238)
T 2hxr_A 29 RGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLA 105 (238)
T ss_dssp --CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEE
T ss_pred CCeEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEE
Confidence 35678887543222 222222 2245666543 345678889999999999999863321111000 000000010
Q ss_pred EEEEEEEeeeEeeecCCCCCccCcc---EEE-ecHHHH-HHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEE
Q 015945 184 IVGEVQLVVNHCLLGLPGVLKEELK---RVF-SHPQAL-AQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAV 255 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g~~l~~I~---~V~-SHpqal-~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI 255 (398)
+..+-.|-|...+..+++++. -|. +..... .....|+.+.+. . ...++|...+.++|+.+ ...|+
T Consensus 106 ----~v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi~~ 178 (238)
T 2hxr_A 106 ----LVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT---SLSTL 178 (238)
T ss_dssp ----EEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHS---SCBEE
T ss_pred ----EEEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CcEEE
Confidence 111222333322222344442 332 222222 335566655443 3 34677777777888775 33667
Q ss_pred cCHHhHH
Q 015945 256 ASAQAAE 262 (398)
Q Consensus 256 ~s~~aA~ 262 (398)
.+...+.
T Consensus 179 lp~~~~~ 185 (238)
T 2hxr_A 179 LPAAIAT 185 (238)
T ss_dssp EETHHHH
T ss_pred ecHHHhc
Confidence 7776654
No 91
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=54.17 E-value=42 Score=29.23 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=68.6
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEE--eeeEeeecCCC-C---CccCc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPG-V---LKEEL 207 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l--~I~h~Ll~~~g-~---~l~~I 207 (398)
++++... +|.++++++.+|++|+++..+..+- + ....+.. .-+. .....++.+++ . +++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~--------~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMSITP--------S--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCBCCH--------H--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCccCH--------h--Hhcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 4667777 8999999999999999864332211 1 1112222 3333 44456666544 1 33444
Q ss_pred c--EEEecHHHHHHHHHHHhh-cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015945 208 K--RVFSHPQALAQCEMTLSN-LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 264 (398)
Q Consensus 208 ~--~V~SHpqal~QC~~fl~~-~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~y 264 (398)
+ +|....-. .. ..++.+ ++...+.+.|..++.+.+..+. -.|++.+...+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYGK--SPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 2 44433221 22 345554 4678888999999999998753 44777777766554
No 92
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=53.83 E-value=1.4e+02 Score=27.75 Aligned_cols=116 Identities=14% Similarity=-0.018 Sum_probs=64.2
Q ss_pred CCcc--ccCC-CHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCc
Q 015945 134 KCET--VPCD-QFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL 207 (398)
Q Consensus 134 ~~~~--~~~~-s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I 207 (398)
++++ .... +..++++++.+|++|+++.... ......-...++.+++.....-...++++++. +++|+
T Consensus 45 ~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DL 117 (348)
T 3uif_A 45 KVEWVPAAMASVGPVINEGFASGKIDFGIYGDL-------PPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDL 117 (348)
T ss_dssp EEEEEEECTTCHHHHHHHHHHTTCCCEEEEESH-------HHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGG
T ss_pred eEEEEecccCCCcHHHHHHHHcCCCCEEecCcH-------HHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHc
Confidence 4566 5555 4778999999999999985432 11111112346777665444444566666542 34454
Q ss_pred c--EEEecHH--HHHHHHHHHhhcC-----CeEEecCCHHHHHHHHHhcCCCCeEEEcCHH
Q 015945 208 K--RVFSHPQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGERDTGAVASAQ 259 (398)
Q Consensus 208 ~--~V~SHpq--al~QC~~fl~~~~-----~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~ 259 (398)
+ +|...+- .......+|.+.+ ++.+.. +.+++...+..+. -+ |++....
T Consensus 118 kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~-vD-a~~~~~~ 175 (348)
T 3uif_A 118 KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT-VD-GFFSLFD 175 (348)
T ss_dssp TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS-SS-EEEESTT
T ss_pred CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC-CC-EEEechH
Confidence 3 5654321 2233456776644 444444 5666666666542 34 4554443
No 93
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=53.45 E-value=40 Score=31.59 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=51.9
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhC-C--C------CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh-c
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAY-P--K------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R 179 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~f-g--~------~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~-~ 179 (398)
+..+|+|-.+..+.++.+.+.++ . . ...+...+.++++.+|.+|++|.+++... ++..+. .
T Consensus 115 kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~ 185 (310)
T 3n5l_A 115 KSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELT 185 (310)
T ss_dssp GGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHH
T ss_pred CCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHh
Confidence 34578875544444566555333 2 1 23345678889999999999999998733 222222 1
Q ss_pred -----CCeEEEEEEEEeeeEeeecCCCC
Q 015945 180 -----HRLHIVGEVQLVVNHCLLGLPGV 202 (398)
Q Consensus 180 -----~~l~I~~Ei~l~I~h~Ll~~~g~ 202 (398)
.++++.++...--.+.++.+++.
T Consensus 186 ~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 186 QPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp CHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred CccchhCEEEEEECCCCCCCcEEEECCC
Confidence 46888877654445667777663
No 94
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=53.31 E-value=48 Score=27.79 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC----CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I~- 208 (398)
++++.+. +|.++++++.+|++|+++-++..+.+.. . .+... .-+.....+++.+++. ++++++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g 109 (227)
T 3tql_A 42 VCTISNQ-PWDSLIPSLKLGKFDALFGGMNITTARQ-----K-----EVDFT-DPYYTNSVSFIADKNTPLTLSKQGLKG 109 (227)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTGG-----G-----TEEEC-SCSBCCEEEEEEETTSCCCCSTTTTTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhHH-----h-----heecc-cceeccceEEEEeCCCCCCCCHHHhCC
Confidence 4566664 8999999999999999864443222111 0 00000 0111223455554442 334442
Q ss_pred -EEEecHHHHHHHHHHHhh--cC-CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 -RVFSHPQALAQCEMTLSN--LG-IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 -~V~SHpqal~QC~~fl~~--~~-~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....-... ..++.+ .+ +..+.+.|..++.+++..+. -.|++++...+..
T Consensus 110 ~~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~ 164 (227)
T 3tql_A 110 KIIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSGR--VDAVVGDTPLIKQ 164 (227)
T ss_dssp CEEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTTS--SSEEESCHHHHHH
T ss_pred CEEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcCC--cCEEEeChHHHHH
Confidence 4433322111 345544 34 78889999999999998753 4488888776654
No 95
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=52.77 E-value=54 Score=27.59 Aligned_cols=136 Identities=11% Similarity=-0.001 Sum_probs=71.5
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
.+..+|++...-+.+ ..... +..++++++. ...+..++.+.+.+|++|+|++.-.....+
T Consensus 10 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~--------------- 74 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEG--------------- 74 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTT---------------
T ss_pred ceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCC---------------
Confidence 355677765332221 11111 1235665543 345678999999999999999874322111
Q ss_pred EEEEEEEeeeEeeecCCC--------CCccCcc---EEEecHH--HHHHHHHHHhhcC---Ce-EEecCCHHHHHHHHHh
Q 015945 184 IVGEVQLVVNHCLLGLPG--------VLKEELK---RVFSHPQ--ALAQCEMTLSNLG---IV-RISADDTAGAAQMVAS 246 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g--------~~l~~I~---~V~SHpq--al~QC~~fl~~~~---~~-~v~~~STA~Aa~~v~~ 246 (398)
+..+.......++++.++ .+++++. -|...+. .-.+...|+.+.+ .. ...++|...+.++|+.
T Consensus 75 l~~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 154 (232)
T 3ho7_A 75 LEDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVES 154 (232)
T ss_dssp EEEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHT
T ss_pred eEEEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHc
Confidence 222333334445554443 2233332 2222111 1234556666533 22 4577777788888886
Q ss_pred cCCCCeEEEcCHHhHH
Q 015945 247 IGERDTGAVASAQAAE 262 (398)
Q Consensus 247 ~~~~~~AAI~s~~aA~ 262 (398)
+ ...||.+...+.
T Consensus 155 g---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 155 G---QGITFIPQLTVE 167 (232)
T ss_dssp T---CCEEEEEGGGGG
T ss_pred C---CcEEEecHHHhh
Confidence 5 347777777665
No 96
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=52.56 E-value=1.1e+02 Score=26.10 Aligned_cols=133 Identities=10% Similarity=-0.034 Sum_probs=71.5
Q ss_pred CceeEEEEEcCCCc-H-HHHHH--HHhCCCCcc-ccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGA-Y-SEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs-~-s~~AA--~~~fg~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
++..+|++...-+. + ..... +..++++++ +...+..++.+.+.+|++|+|++.... .+
T Consensus 26 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~~--------------- 88 (238)
T 3onm_A 26 EGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--DS--------------- 88 (238)
T ss_dssp -CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC---C---------------
T ss_pred ceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--CC---------------
Confidence 45678887543222 2 22222 124566654 335677889999999999999986431 11
Q ss_pred EEEEEEEeeeEeeecCCCCCc---cCccEEE-ecHHH-HHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEE
Q 015945 184 IVGEVQLVVNHCLLGLPGVLK---EELKRVF-SHPQA-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAV 255 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g~~l---~~I~~V~-SHpqa-l~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI 255 (398)
+..+.......++++.++-.+ ..+.-|. .+... .....+|+.+.+. . ...++|...+.++|+.+ ...||
T Consensus 89 ~~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Giai 165 (238)
T 3onm_A 89 HPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVTA 165 (238)
T ss_dssp CCEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBEE
T ss_pred cceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEEE
Confidence 112222333445555444322 2333333 22222 2445667766443 2 34677777777888765 33566
Q ss_pred cCHHhH
Q 015945 256 ASAQAA 261 (398)
Q Consensus 256 ~s~~aA 261 (398)
.+...+
T Consensus 166 lp~~~~ 171 (238)
T 3onm_A 166 RPIEMM 171 (238)
T ss_dssp EEGGGC
T ss_pred echHHc
Confidence 666544
No 97
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=52.30 E-value=30 Score=30.16 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=65.8
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----CCccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-----~~l~~I~ 208 (398)
++++... +|.++++++.+|++|+++.++..+.+ ..+ .+.. ..-.......++.+++ .+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~-----~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKTDE-----RSK-----VFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCCHH-----HHT-----TEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCCHh-----Hhh-----ceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 4677777 99999999999999997654332211 101 1111 1112223344554433 1344443
Q ss_pred --EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 --RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 --~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....-.. ...++.+ ++...+.+.|..++.+++..+. -.|+++....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSGQ--VDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcCC--CCEEEeChHHHHH
Confidence 444433211 2445555 3678889999999999998753 3477776665543
No 98
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=52.06 E-value=1.5e+02 Score=27.58 Aligned_cols=172 Identities=10% Similarity=-0.003 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC------CCCccccCCC-----HHHHHHHHHcCCccEEEEeec----------------
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIE---------------- 163 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f------g~~~~~~~~s-----~~~v~~aV~~g~~d~gvVPIE---------------- 163 (398)
..|++...|+|+..+.++..+- |.+++..+.+ ..+++++|..|.+|++++..-
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 3578888888887666665321 3455544433 478999999999999987621
Q ss_pred --cc-c-------cc--chHH-hHHhhhcCCeEEEEEEEEeeeEeeecCCC-CCccCcc--EEEecHHHHHHHHHHHhhc
Q 015945 164 --NS-V-------GG--SIHR-NYDLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNL 227 (398)
Q Consensus 164 --NS-~-------~G--~V~~-tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-~~l~~I~--~V~SHpqal~QC~~fl~~~ 227 (398)
.+ . .| .+.. ..+.+.+.++++.+-......+.. .++. .+++|++ +|..-+-.. -.++++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 01 0 12 1111 122334568888876554444333 4333 3556665 566533222 24678888
Q ss_pred CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCc-eEEEEEec
Q 015945 228 GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNV-TRFLILAR 288 (398)
Q Consensus 228 ~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~-TRF~vi~~ 288 (398)
++..++..- ++.-..+..+ .-+ |+..+.......++.-+.+.+.+..+.. +-++++++
T Consensus 159 Ga~pv~m~~-~Evy~ALq~G-~VD-g~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW-GEVYGGLQTG-IID-GQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG-GGHHHHHHHT-SCS-EEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC-Ccc-eeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 888765532 3333333333 233 5556655555556544444444433333 34455544
No 99
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=50.81 E-value=88 Score=26.31 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=66.1
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCCC----ccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL----KEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~~----l~~I~- 208 (398)
++++... +|.++++++.+|++|+ +.++.-+- + ....+.. ..-......+++.+++.. +++++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~~~--------~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISWSE--------K--RARQIDF-TPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEECCH--------H--HHTTEEE-EEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccCCH--------h--HHhhcCC-CccccccceEEEEECCCCCCCCHHHhCC
Confidence 4666654 8999999999999999 34443221 1 1112222 233445566777765532 33332
Q ss_pred -EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015945 209 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 209 -~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~ 262 (398)
+|....-. . -..+|.+ ++++.+.+.|..++.+++..+. -.|+++....+.
T Consensus 118 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDG-I-MHEYLAERGYGKDLVLTPTPADALRLLAAGG--CDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTS-H-HHHHHHTTTCGGGEEEESSHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred CEEEEEeCc-h-HHHHHHhcCCCceEEEeCCHHHHHHHHHcCC--ceEEEeccHHHH
Confidence 33322211 1 1356666 3468889999999999998753 347777766554
No 100
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=50.13 E-value=8.7 Score=33.31 Aligned_cols=115 Identities=13% Similarity=0.000 Sum_probs=65.6
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----CCccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-----~~l~~I~ 208 (398)
.++++.. +|.+++.++.+|++|+++.++..+-+ --+.+.-+. -+......++.+++ .++++++
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~~fs~------p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGISINLE-----RQRQAYFSI------PYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHH-----HHTTCEECS------CSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHH-----HcCccccch------HHhccCcEEEEECCcccccCCHHHhc
Confidence 4667776 89999999999999998655442221 101110011 11222334444332 1334443
Q ss_pred ----EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHc
Q 015945 209 ----RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 264 (398)
Q Consensus 209 ----~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~y 264 (398)
+|....-.. -..++.+ ++..++.+.|..++.+++..+. -.|+|+....+..+
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDGK--ADLMMTDAIEARLQ 180 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTTS--CSEEEEEHHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcCC--cCEEEEchHHHHHH
Confidence 454332211 1345555 4678888999999999998753 34777777766543
No 101
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=50.09 E-value=27 Score=29.90 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=25.7
Q ss_pred EeCCCcchHHHHHHHHHhCCceeeeeeee
Q 015945 306 TLEEGPGMLFKALAVFALRDINLTKIESR 334 (398)
Q Consensus 306 ~~~~~pGaL~~~L~~F~~~~INLt~IESR 334 (398)
..+++||.+.++++.++++|||+-.|-.-
T Consensus 23 g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 23 GIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 35789999999999999999999998653
No 102
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=48.52 E-value=18 Score=31.44 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeeee
Q 015945 300 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIES 333 (398)
Q Consensus 300 ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~IES 333 (398)
-+.|.+ .++++||.+.++++.|+++|||+-.|-.
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 344433 3589999999999999999999988754
No 103
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=48.18 E-value=14 Score=32.15 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEee
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPI 162 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 162 (398)
..+|++. .|+..+.....++ | ..+++.+.+..+++++|.+|++|+++...
T Consensus 148 g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 201 (259)
T 2v25_A 148 GANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDK 201 (259)
T ss_dssp TCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEecH
Confidence 4678875 4554443344343 3 23677889999999999999999998863
No 104
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=47.78 E-value=1.3e+02 Score=28.56 Aligned_cols=133 Identities=11% Similarity=-0.037 Sum_probs=75.5
Q ss_pred ceeEEEEEcCCCcHHHHHHHHh-------C-CCCccccCC-----CHHHHHHHHHcCCccEEEEeecccc--------cc
Q 015945 110 TKVRVAYQGLPGAYSEAAARKA-------Y-PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENSV--------GG 168 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~-------f-g~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS~--------~G 168 (398)
...+++...|.|+..+.++..+ - |.+++..+. +..+++++|..|.+|++++...... -+
T Consensus 34 ~~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~ 113 (361)
T 2zzv_A 34 YRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLS 113 (361)
T ss_dssp EEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSS
T ss_pred eEEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHh
Confidence 4678998888886655544432 1 234443332 5689999999999999988643111 01
Q ss_pred --c--h------HH---------hHH-hhhcCCeEEEEEEEEeeeEeeecCCC-CCccCcc--EEEecHHHHHHHHHHHh
Q 015945 169 --S--I------HR---------NYD-LLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLS 225 (398)
Q Consensus 169 --~--V------~~---------tld-~L~~~~l~I~~Ei~l~I~h~Ll~~~g-~~l~~I~--~V~SHpqal~QC~~fl~ 225 (398)
+ . .. .++ .+.+.++++.+ ......+.+...+. .+++|++ +|..-. . -...+++
T Consensus 114 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~--~~~~~~~ 189 (361)
T 2zzv_A 114 SYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-G--MIAEVFA 189 (361)
T ss_dssp CCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-H--HHHHHHH
T ss_pred cCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-H--HHHHHHH
Confidence 0 0 00 011 12346788887 55444443333333 3566766 555443 2 2356787
Q ss_pred hcCCeEEecCCHHHHHHHHHhc
Q 015945 226 NLGIVRISADDTAGAAQMVASI 247 (398)
Q Consensus 226 ~~~~~~v~~~STA~Aa~~v~~~ 247 (398)
..++..++. +.++....+..+
T Consensus 190 ~lGa~pv~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 190 AAGASTVLL-PGGEVYPALERG 210 (361)
T ss_dssp HTTCEEECC-CGGGHHHHHHTT
T ss_pred HcCCeeeec-ChHHHHHHHHcC
Confidence 788887765 445555555554
No 105
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=47.71 E-value=1.6e+02 Score=27.54 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=74.8
Q ss_pred ceeEEEEEcCCCcHHH---HHHH---Hh----CC-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHH---
Q 015945 110 TKVRVAYQGLPGAYSE---AAAR---KA----YP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD--- 175 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~---~AA~---~~----fg-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld--- 175 (398)
++.+|+.-++.|+|.- ..++ +. .| ++.+.......+.+.++.+|++|++++.... +...+.
T Consensus 32 ~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~-----~~~a~~g~~ 106 (327)
T 4ddd_A 32 EYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDL-----EYYAYNGLG 106 (327)
T ss_dssp EEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHH-----HHHHHHTCG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHH-----HHHHHhCcC
Confidence 4566776556666622 2222 12 23 3566777788899999999999999886431 111111
Q ss_pred hhh----cCCeEEEEEEEEeeeEeeecCCCC---CccCcc--EEEe-cHH--HHHHHHHHHhhcCC-----eEEecCCHH
Q 015945 176 LLL----RHRLHIVGEVQLVVNHCLLGLPGV---LKEELK--RVFS-HPQ--ALAQCEMTLSNLGI-----VRISADDTA 238 (398)
Q Consensus 176 ~L~----~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~--~V~S-Hpq--al~QC~~fl~~~~~-----~~v~~~STA 238 (398)
-+. ..++..++.+.- -...|+++++. +++|++ +|.- .+- .....+.+++..++ ..+...+.+
T Consensus 107 ~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~ 185 (327)
T 4ddd_A 107 FYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSS 185 (327)
T ss_dssp GGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHH
T ss_pred cccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHH
Confidence 011 135766665543 34556665543 344442 4432 221 12334566666444 356788889
Q ss_pred HHHHHHHhcC
Q 015945 239 GAAQMVASIG 248 (398)
Q Consensus 239 ~Aa~~v~~~~ 248 (398)
++...+..+.
T Consensus 186 ~a~~aL~~G~ 195 (327)
T 4ddd_A 186 EQAQALCDNK 195 (327)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHcCC
Confidence 9988888653
No 106
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=47.47 E-value=15 Score=31.30 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=38.3
Q ss_pred CCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHH
Q 015945 308 EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQE 381 (398)
Q Consensus 308 ~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~ 381 (398)
++.||.+.++++.|+++|||+-.|-+-+ -...|.|+- .+ .+.+++++|++
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~-------------------~~Isf~v~~----~~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE-------------------VGVSLTIDN----DK-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS-------------------SEEEEEESC----CT-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC-------------------CEEEEEECC----hH-HHHHHHHHHhc
Confidence 5789999999999999999999887522 246788772 12 56778888864
No 107
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=47.36 E-value=30 Score=30.02 Aligned_cols=114 Identities=15% Similarity=0.027 Sum_probs=65.0
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----CCccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-----~~l~~I~ 208 (398)
.++++.. +|.+++.++.+|++|+++-++..+.+ -...+.-+. -+......++.+++ .++++++
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~~~s~------p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTISQE-----RNLRVNFVE------PYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH-----HHTTSEECS------CSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred eEEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHH-----HHhhcCcch------hhheeceEEEEECCcccccCCHHHhc
Confidence 4566664 79999999999999987544332211 001111011 11222345555444 1345554
Q ss_pred ----EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 ----RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ----~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....- ... ..++.+ ++..++.+.|..++.+++..+. -.|+|++...+..
T Consensus 113 ~~g~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 169 (245)
T 3k4u_A 113 KPELTLVTKFG-VSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNGK--ADMFIFDLPFNVA 169 (245)
T ss_dssp CSSCEEEEETT-SHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSSS--SEEEEEEHHHHHH
T ss_pred cCCcEEEEeCC-cHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcCC--CcEEEEcHHHHHH
Confidence 3433322 222 345555 4688899999999999998753 4577887655543
No 108
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=44.54 E-value=77 Score=27.42 Aligned_cols=114 Identities=8% Similarity=-0.032 Sum_probs=65.8
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC----CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I~- 208 (398)
+++++.. +|.+++.++.+|++|+++.++..+.+ ..+ .+... .-+......++.+++. ++++++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~-----~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEE-----RRK-----AIDFS-DPYYDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHH-----HHT-----TEEEC-SCCEEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHH-----HHc-----Cccee-cceeeccEEEEEECCCCCcCChHHhCC
Confidence 4666665 78999999999999998765543221 001 11111 1112233455554432 233332
Q ss_pred -EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 -RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 -~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|..-. .... ..|+.+ ++..++.+.|..++.+++..+. -.|+|+....+..
T Consensus 131 ~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKT-GTAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAGR--VDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEET-TSHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CEEEEeC-CChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcCC--eeEEEeCcHHHHH
Confidence 443322 1122 346655 4678889999999999998753 4477777766543
No 109
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=44.32 E-value=1.6e+02 Score=25.76 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=70.7
Q ss_pred CCceeEEEEEcCCCc-H-HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCe
Q 015945 108 DGTKVRVAYQGLPGA-Y-SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 182 (398)
Q Consensus 108 ~q~~~kVa~lGp~Gs-~-s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l 182 (398)
..+..+|++...-+. + ..... +..++++++. ...+..++.+.+.+|++|+|++.......+.... .|.+..+
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~~---~l~~~~~ 165 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIV---NIAQEDL 165 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEEE---EEEEEEE
T ss_pred CCceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceEE---EEeeccE
Confidence 346678887543332 2 22222 2235665542 3345678899999999999998644321111000 0000011
Q ss_pred EEEEEEEEeeeEeeecCCCCCccCc---cEEEec----HHHHHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCe
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKEEL---KRVFSH----PQALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDT 252 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~~I---~~V~SH----pqal~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~ 252 (398)
. ++.+-.|-|...+..+++++ .-|... +..-....+|+...+. . ...++|...+.++|..+ ..
T Consensus 166 ~----~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~G 238 (294)
T 1ixc_A 166 Y----LAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG---AA 238 (294)
T ss_dssp E----EEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT---SC
T ss_pred E----EEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC---Ce
Confidence 1 11122232322222233333 344333 1223445667766443 3 34677777777788765 33
Q ss_pred EEEcCHHhH
Q 015945 253 GAVASAQAA 261 (398)
Q Consensus 253 AAI~s~~aA 261 (398)
.|+.+...+
T Consensus 239 ia~lp~~~~ 247 (294)
T 1ixc_A 239 SSIVPASVA 247 (294)
T ss_dssp BEEEEHHHH
T ss_pred EEEechhhh
Confidence 667777654
No 110
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=44.03 E-value=62 Score=30.43 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=55.0
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh----cCC
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL----RHR 181 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg----~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~----~~~ 181 (398)
...+|++.+|...... ++..+|. .++++.+.++.+..+++.+|++|++..-- ...++.+. ..+
T Consensus 39 ~~i~IG~~~~~~~~~~-~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~--------~~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKAWE-KVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQH--------FAFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHHHH-HHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEE--------HHHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHHHH-HHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCC--------HHHHHHHHHhcCCCC
Confidence 4589999965543333 3444663 57889999999999999999999987432 13344432 246
Q ss_pred eEEEEEEEEeeeEeeecCCCCCccCc
Q 015945 182 LHIVGEVQLVVNHCLLGLPGVLKEEL 207 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~~l~~I 207 (398)
+.+++.+...- ..+.+.+-.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 77777654331 34444333345566
No 111
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=43.76 E-value=1.4e+02 Score=27.08 Aligned_cols=113 Identities=15% Similarity=-0.021 Sum_probs=67.3
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh-cCCeEEEEEEEEeeeEeeecCCCC-----CccCc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPGV-----LKEEL 207 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~-~~~l~I~~Ei~l~I~h~Ll~~~g~-----~l~~I 207 (398)
.+++....++.+++++|.+|++|+++.+.. .++.... ..++.+.+.....-...++.+++. +++|+
T Consensus 65 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL 136 (346)
T 3qsl_A 65 DVSIADFAGGSKALQAVVGGSADVVSGAFE--------HTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL 136 (346)
T ss_dssp EEEEEECSSHHHHHHHHHTTSCSEEEEETH--------HHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG
T ss_pred eEEEEecCChHHHHHHHHCCCCCEEccchH--------HHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc
Confidence 367788899999999999999999987643 2222222 235555554333223455554422 34555
Q ss_pred c--EEEec-HH--HHHHHHHHHhhcC-----CeEEecCCHHHHHHHHHhcCCCCeEEE
Q 015945 208 K--RVFSH-PQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGERDTGAV 255 (398)
Q Consensus 208 ~--~V~SH-pq--al~QC~~fl~~~~-----~~~v~~~STA~Aa~~v~~~~~~~~AAI 255 (398)
+ +|... +- .....+.+|++.+ ++.+...+.+++...+..+. -+.+.+
T Consensus 137 ~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~-vDa~~~ 193 (346)
T 3qsl_A 137 KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ-IDAISN 193 (346)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS-CSEEEE
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC-ccEEEe
Confidence 3 56554 32 2334467777643 45677777777777777653 343333
No 112
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=42.68 E-value=1.7e+02 Score=25.45 Aligned_cols=116 Identities=10% Similarity=-0.084 Sum_probs=62.5
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----CCccCcc
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g-----~~l~~I~ 208 (398)
+++++.. +|.++++++.+|++|+++-.+..+-+. -..+.-..- +......++.+.+ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r-----~~~~~fs~p------~~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITDKR-----KKVIDFSEP------YYINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHH-----HTTEEECCC------SEEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHH-----hhccccccc------hhhCceEEEEEcCCCCCCCCHHHhC
Confidence 4677777 899999999999999987655433211 011100111 1122233443221 1334442
Q ss_pred --EEEecH--HHHHHHHHHHhhcC----CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 --RVFSHP--QALAQCEMTLSNLG----IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 --~V~SHp--qal~QC~~fl~~~~----~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|.... .....-++++...+ .+++.+.|..++.+.+..+. -.|++++...+..
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 197 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN--LDLAFIEEPVYFT 197 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 343322 11122223333222 57788889999999998763 3477777665543
No 113
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=42.51 E-value=11 Score=33.12 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=24.1
Q ss_pred CCCCcchhhhHHHhhhchhhHHHHHhhhhccccc
Q 015945 24 LVPNRCGFGLDLRVLNKWECTCVGVLAQTHRAIT 57 (398)
Q Consensus 24 ~~~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~ 57 (398)
..+.|.++|-+||+++.+ |+..|.+ +..+
T Consensus 93 ~~~dL~~~R~~ld~l~~~---ll~~l~~--~~~~ 121 (166)
T 2fp1_A 93 EPPDLSASRSAIDSLNNR---MLSQIWS--HWSL 121 (166)
T ss_dssp SCCCSHHHHHHHHHHHHH---HHHHHHH--THHH
T ss_pred CCCCHHHHHHHHHHHHHH---HHHHHHH--HHhh
Confidence 345679999999999999 9999999 5543
No 114
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=41.51 E-value=64 Score=30.08 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=53.9
Q ss_pred ceeEEEEEc-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCC
Q 015945 110 TKVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHR 181 (398)
Q Consensus 110 ~~~kVa~lG-p~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~ 181 (398)
...+||+.+ |.....+. +..+| | .++++.+.++.+.-.|+.+|++|+...-.. +.++.+. .++
T Consensus 11 ~~ikVG~~~~p~~~il~~-v~~~~~k~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyL~~~~k~~g~~ 81 (252)
T 4ib2_A 11 KTIKVAASATPHAEILEQ-AKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHV--------PYLESFNEEKGTH 81 (252)
T ss_dssp HEEEEEECTTTHHHHHHH-HHHHHHHTTCEEEEEECSSSSHHHHHHHTTSSSEEEEEEH--------HHHHHHHHHHCCC
T ss_pred ceEEEEEcCCChHHHHHH-HHHHHHhcCCeEEEEEecChhhHHHHHHcCCcCeeecCCH--------HHHHHHHHHCCCC
Confidence 457899873 32222222 34444 3 478999999999999999999999766433 3455443 346
Q ss_pred eEEEEEEEEeeeEeeecCCCCCccCc
Q 015945 182 LHIVGEVQLVVNHCLLGLPGVLKEEL 207 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~~l~~I 207 (398)
|..++.+.+.- ..|.+.+-.+++++
T Consensus 82 lv~v~~~~~~p-~glyS~kiksl~dL 106 (252)
T 4ib2_A 82 LVDAGDIHYEP-FGIYPGTKKSLDEI 106 (252)
T ss_dssp EEEEEEEEECC-CEEEESSCSCGGGC
T ss_pred EEEEeeccccc-eEeecCCcCCHHHc
Confidence 77666654432 35555443344443
No 115
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=41.32 E-value=82 Score=31.70 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHH---hHHHcCCceeecccccCCCCceEEEEEecCCCCCC---CC----C
Q 015945 228 GIVRISADDTAGAAQMVASIGERDTGAVASAQ---AAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAG---TD----R 297 (398)
Q Consensus 228 ~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~---aA~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~~~---~~----~ 297 (398)
+++.+..-|..++.+++..+ |-+-... -|..+|.++.-.|..+...-=|.|. ......+. -+ .
T Consensus 223 ~a~~i~~is~~e~~ela~~G-----a~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~--~~~~~~~~~~~v~gIa~~ 295 (446)
T 3tvi_A 223 NPKTISKISYKELRELSYMG-----ATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLIL--SDTHKEINLGTITGIAGK 295 (446)
T ss_dssp SCCBCSEEEHHHHHHTTTC---------CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEE--CTTTSCCCTTCCCEEEEE
T ss_pred CCeEcceeCHHHHHHHHhCC-----CCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEe--cCCcccccCcceEEEEec
Confidence 34455555556666654321 2122223 3566899998888766544557663 11111010 01 1
Q ss_pred CceEEEEEE---eCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHH
Q 015945 298 PYKTSIVFT---LEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQF 374 (398)
Q Consensus 298 ~~ktsi~f~---~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~ 374 (398)
.+-+.|.+. .++.||.+.++++.|+++|||+-.|.+-. -...|.|+-+.- +...++
T Consensus 296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~-------------------~~is~~V~~~d~--~~~~~~ 354 (446)
T 3tvi_A 296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGV-------------------DSVSLVIEDCKL--DGKCDK 354 (446)
T ss_dssp EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEET-------------------TEEEEEEEHHHH--TTTHHH
T ss_pred CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCC-------------------CEEEEEEecchH--HHHHHH
Confidence 122223333 24789999999999999999999885421 246788765321 124567
Q ss_pred HHHHHHHhc
Q 015945 375 ALGHLQEFA 383 (398)
Q Consensus 375 al~~L~~~~ 383 (398)
++++|+..+
T Consensus 355 ~~~el~~~~ 363 (446)
T 3tvi_A 355 IIEEIKKQC 363 (446)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 788887654
No 116
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=41.23 E-value=1.8e+02 Score=26.12 Aligned_cols=93 Identities=9% Similarity=-0.124 Sum_probs=54.1
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhh-hcCCeEEEEEEEEeeeEeeecCCCC---CccCc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL-- 207 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L-~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I-- 207 (398)
++++....+..+.++++.+|++|+++.... ..+... ...++.+++.....-...|+++++. +++|+
T Consensus 35 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~G 106 (302)
T 3ix1_A 35 DVDIVFPTNPTDPIQLTASGAIPLALSYQP--------DVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVG 106 (302)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCSEEEECHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTT
T ss_pred cEEEecCCCCchHHHHHHCCCCCEEecCHH--------HHHHHHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCC
Confidence 367777777779999999999999986422 111111 2346777666554444677776542 33444
Q ss_pred cEEEecHH--HHHHHHHHHhhcC-----CeEEec
Q 015945 208 KRVFSHPQ--ALAQCEMTLSNLG-----IVRISA 234 (398)
Q Consensus 208 ~~V~SHpq--al~QC~~fl~~~~-----~~~v~~ 234 (398)
++|....- .....+.+|.+.+ ++.+..
T Consensus 107 k~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~ 140 (302)
T 3ix1_A 107 LTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDV 140 (302)
T ss_dssp SEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEEC
T ss_pred CEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEec
Confidence 35544322 2233566776643 455555
No 117
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=40.94 E-value=84 Score=29.02 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=55.9
Q ss_pred CceeEEEEEc-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cC
Q 015945 109 GTKVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RH 180 (398)
Q Consensus 109 q~~~kVa~lG-p~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~ 180 (398)
.+..+||+.+ |.....+.+...+. | .++++.+.++.+.-.|+.+|++|....-.. +.++.+. .+
T Consensus 5 ~~~ikVG~~~~p~~~il~~~~~~l~~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~g~ 76 (237)
T 3k2d_A 5 TSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHK--------PYLDRQVEDRDY 76 (237)
T ss_dssp CCCEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHCC
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHhcCCEEEEEEeCChHhHHHHHHcCCCCeeccCCH--------HHHHHHHHHCCC
Confidence 3568999984 43333333333222 4 678999999999999999999999987543 4455443 24
Q ss_pred CeEEEEEEEEeeeEeeecCCCCCccCcc
Q 015945 181 RLHIVGEVQLVVNHCLLGLPGVLKEELK 208 (398)
Q Consensus 181 ~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~ 208 (398)
+|..+|.+.+.- ..|.+.+-.++++++
T Consensus 77 ~lv~v~~~~~~p-~glYS~k~ksl~dL~ 103 (237)
T 3k2d_A 77 KLTIAGNTFVYP-IAGYSKQVKSVAALA 103 (237)
T ss_dssp CEEEEEECCCCC-CEEECSSCSCSTTCC
T ss_pred CEEEEeeecccc-eEEecCCCCCHHHhc
Confidence 666666544332 355554433444443
No 118
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=40.61 E-value=2e+02 Score=25.76 Aligned_cols=141 Identities=18% Similarity=0.094 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCc--HHHHHHH--HhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEE
Q 015945 111 KVRVAYQGLPGA--YSEAAAR--KAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIV 185 (398)
Q Consensus 111 ~~kVa~lGp~Gs--~s~~AA~--~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~ 185 (398)
..+|++...-+. +...... ..++++++. ...+..++.+.+.+|++|+|++.......|.... .|.+..+.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~~---~L~~~~~~-- 165 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHS---LLRNERLM-- 165 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEEE---EEEEEEEE--
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceEE---EeecceEE--
Confidence 677777543332 2232222 235666543 3456788999999999999998643211111100 00010111
Q ss_pred EEEEEeeeEeeec-CCC-CCccCc---cEEEecH----HHHHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeE
Q 015945 186 GEVQLVVNHCLLG-LPG-VLKEEL---KRVFSHP----QALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTG 253 (398)
Q Consensus 186 ~Ei~l~I~h~Ll~-~~g-~~l~~I---~~V~SHp----qal~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~A 253 (398)
+..+-.|-|.. ... .+++++ .-|.-.+ ....+..+|+...+. . ...++|...+.++|+.+ ...
T Consensus 166 --~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (312)
T 2h9b_A 166 --VAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG---EGI 240 (312)
T ss_dssp --EEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC---CcE
Confidence 12233343433 222 334444 3343211 123445667766443 2 45677777777788765 235
Q ss_pred EEcCHHhH
Q 015945 254 AVASAQAA 261 (398)
Q Consensus 254 AI~s~~aA 261 (398)
|+.+...+
T Consensus 241 a~lp~~~~ 248 (312)
T 2h9b_A 241 SLVPASTQ 248 (312)
T ss_dssp EEEEGGGG
T ss_pred EEecchhh
Confidence 66666544
No 119
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=40.32 E-value=8.8 Score=34.18 Aligned_cols=116 Identities=9% Similarity=-0.035 Sum_probs=60.6
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCcc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~-- 208 (398)
.++++.. +|.+++.++.+|++|+++-++..+.+ -... +... .-+.....+++.+++. ++++++
T Consensus 61 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~-----~~fs-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 128 (268)
T 3hv1_A 61 DVEWQAI-DWDMKETELKNGTIDLIWNGYSVTDE-----RKQS-----ADFT-EPYMVNEQVLVTKKSSGIDSVAGMAGK 128 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSCSEECSSCBCCHH-----HHTT-----CEEC-CCCEEECEEEEEEGGGCCCSSGGGTTC
T ss_pred cEEEEEC-CHHHHHHHHHCCCCCEEEecCccCHH-----HHhc-----CcCc-HHHeeCceEEEEECCCCCCCHHHhCCC
Confidence 3566666 59999999999999987633322111 1111 1111 1122233445544332 233332
Q ss_pred EEEecH-----HHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHP-----QALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHp-----qal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|..-. ..+.+-.+++.. ++.+++.+.|..++.+++..+. -.|+|++...+..
T Consensus 129 ~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 188 (268)
T 3hv1_A 129 TLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR--IDGLLIDRVYANY 188 (268)
T ss_dssp CEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred EEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC--CCEEEeCHHHHHH
Confidence 232211 111111122222 1367888999999999999863 3477777765543
No 120
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=40.23 E-value=87 Score=27.61 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=62.9
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCcc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~-- 208 (398)
.++++..+ |.++++++.+|++|+++.++..+. +- ...+... .-+......++.+++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~-----~r-----~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITITD-----ER-----KQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCCH-----HH-----HTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCCH-----HH-----HhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 46666665 999999999999999864332111 10 0111111 1112333455555543 233332
Q ss_pred EEEecHHHHHHHHHHHhhc---CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHPQALAQCEMTLSNL---GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~~---~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....- -.. ..++.+. ...++.+.|..++.+++..+. -.|++++...+..
T Consensus 149 ~i~~~~g-~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNA-TTG-QEAAEKLFGKGPHIKKFETTVVAIMELLNGG--VDAVITDNAVANE 202 (272)
T ss_dssp CEEEETT-SHH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred eEEEEcC-chH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 3433221 111 2344442 467788889999999998753 3477777665543
No 121
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=39.44 E-value=31 Score=31.17 Aligned_cols=51 Identities=22% Similarity=0.083 Sum_probs=38.2
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEee
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 162 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPI 162 (398)
+..+|++. +.|+.++...+.++.+++++.. ++.++..++.+|++|.+++.-
T Consensus 102 kGK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 102 DGKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp TTCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 55789986 4577777767767776665544 668899999999999988753
No 122
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=38.45 E-value=39 Score=32.00 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC----C-C---CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY----P-K---CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 182 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f----g-~---~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l 182 (398)
..+|+|-.+.++.++.+...++ | . .+.+...+..+++.+|.+|++|.+++... +....+...- ....++
T Consensus 126 gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~-~~~~~~~~~p--~~~~~l 202 (321)
T 3p7i_A 126 DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE-NLDKLKTSAP--EKLKEL 202 (321)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH-HHHTHHHHCH--HHHTTE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH-HHHHHHHhCc--chhccE
Confidence 4578876555554566555422 2 1 22345678899999999999999998632 1111111000 012467
Q ss_pred EEEEEEEEeeeEeeecCCC
Q 015945 183 HIVGEVQLVVNHCLLGLPG 201 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g 201 (398)
++.++...--.+.++.+++
T Consensus 203 rvl~~s~~~p~~~i~~~k~ 221 (321)
T 3p7i_A 203 KVIWKSPLIPGDPIVWRKN 221 (321)
T ss_dssp EEEEECSCBCCCEEEEETT
T ss_pred EEEEEcCCCCCCceeeeCC
Confidence 8877543222345555555
No 123
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=37.99 E-value=26 Score=32.41 Aligned_cols=51 Identities=12% Similarity=-0.061 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhC---C-CCccccCC-CHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAY---P-KCETVPCD-QFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~f---g-~~~~~~~~-s~~~v~~aV~~g~~d~gvVP 161 (398)
+..+|++- ..|+-++...+.++ | +++++... ++.++..++.+|++|.++++
T Consensus 95 kGK~Iav~-~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 95 KEPALYVF-GNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp CSCCEECS-STTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEec-CCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 45688874 36777766555433 3 56777776 89999999999999999986
No 124
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=37.54 E-value=2.1e+02 Score=25.13 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCcc--E
Q 015945 135 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK--R 209 (398)
Q Consensus 135 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~--~ 209 (398)
+++++. +|.+++.++.+|++|+++..+.-+ -+. ...+.. ..-+......++++++. ++++++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~r--~~~~~~-s~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTTNN--------VER--QKQAAF-SDTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCBCC--------HHH--HTTCEE-EEEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEeccccCC--------cch--hhcccc-cceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 455665 678999999999999885432211 111 112222 12234445566666553 234442 4
Q ss_pred EEecH--HHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 210 VFSHP--QALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 210 V~SHp--qal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
|..-. ........++.. .+...+.+.|..++.+++..+. -.|++.+...+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR--AVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC--eeEEEeChHHHHH
Confidence 44322 111223333333 3678888999999999998753 3467776665543
No 125
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=37.51 E-value=76 Score=27.08 Aligned_cols=137 Identities=13% Similarity=-0.021 Sum_probs=68.6
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCcc-ccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
++..+|++...-+.+ ..... +..++++++ +...+..++.+.+.+|++|+|++.-.....|
T Consensus 18 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~--------------- 82 (241)
T 3oxn_A 18 DQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEP--------------- 82 (241)
T ss_dssp CCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTT---------------
T ss_pred CceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCcc---------------
Confidence 466778875332221 11111 224566654 2345567889999999999999964321111
Q ss_pred EEEEEEEeeeEeeecCCC-------CCccCc---cEEEecH--HHHHHHHHHHhhc-CCe-EEecCCHHHHHHHHHhcCC
Q 015945 184 IVGEVQLVVNHCLLGLPG-------VLKEEL---KRVFSHP--QALAQCEMTLSNL-GIV-RISADDTAGAAQMVASIGE 249 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g-------~~l~~I---~~V~SHp--qal~QC~~fl~~~-~~~-~v~~~STA~Aa~~v~~~~~ 249 (398)
+..+.......++++.++ .+++++ .-|.-.+ ....+...|+.+. ... ...++|...+.++|+.+
T Consensus 83 ~~~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-- 160 (241)
T 3oxn_A 83 LRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTL-- 160 (241)
T ss_dssp EEEEEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--C--
T ss_pred ceeEEeecccEEEEEeCCCCcccCCCCHHHHhcCCeEEEecCCCccchhHHHHHhhccceEEEECCcHHHHHHHHhCC--
Confidence 122222333334443332 233333 2232222 1123344455444 122 34677777777787764
Q ss_pred CCeEEEcCHHhHHH
Q 015945 250 RDTGAVASAQAAEI 263 (398)
Q Consensus 250 ~~~AAI~s~~aA~~ 263 (398)
...||.+...+..
T Consensus 161 -~giailp~~~~~~ 173 (241)
T 3oxn_A 161 -PIIITVPADLAYL 173 (241)
T ss_dssp -CCEEEEEHHHHHH
T ss_pred -CeEEEcHHHHHHH
Confidence 3477777777664
No 126
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=37.45 E-value=2.4e+02 Score=25.63 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=81.5
Q ss_pred ceeEEEEEcCCCcH--HHHHHHHhC--C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh-cCCeE
Q 015945 110 TKVRVAYQGLPGAY--SEAAARKAY--P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLH 183 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~--s~~AA~~~f--g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~-~~~l~ 183 (398)
...||+++-..-++ .+..-...+ | ++++..+.+.+++.+++.+|++|++++|..-. ..+.. ..+++
T Consensus 5 ~~irvg~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~--------~~~~~~g~~~~ 76 (283)
T 3hn0_A 5 TVIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMINA--------ANLYNKGIKIK 76 (283)
T ss_dssp CEEEEEEESSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHH--------HHHHHTTCSCE
T ss_pred ceEEEEecCCCcHHHHHHHHhccccccCccEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHH--------HHHHHCCCCeE
Confidence 56899998322122 122222122 2 35778899999999999999999999875411 11111 12566
Q ss_pred EEEEEEEeeeEeeecCCCCCccCccEEEec-H--HHHHHHHHHHhhcC--CeEEecC-CHHHHHHHHHhcCCCCeEEEcC
Q 015945 184 IVGEVQLVVNHCLLGLPGVLKEELKRVFSH-P--QALAQCEMTLSNLG--IVRISAD-DTAGAAQMVASIGERDTGAVAS 257 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g~~l~~I~~V~SH-p--qal~QC~~fl~~~~--~~~v~~~-STA~Aa~~v~~~~~~~~AAI~s 257 (398)
|++-...- ...|++++. |. =|+|... + .+.-..+.+|++.+ ++++... +.+++...+..+ .-+++++..
T Consensus 77 i~~~~~~g-~~~lv~~~~--Lk-GK~Iav~~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G-~vDa~~~~e 151 (283)
T 3hn0_A 77 LAGCPIWG-TLYLVEKTP--LK-EPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAG-KVNRAVLGE 151 (283)
T ss_dssp EEEEEECC-CCEEEECSS--CC-SCCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHT-SCSEEEECT
T ss_pred EEEEeccc-EEEEEecCC--CC-CCEEEecCCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcC-CCCEEEecc
Confidence 65433211 123454433 32 2466632 2 23445567777744 5666665 677777777764 345555554
Q ss_pred HHhHH--H--cCCceee
Q 015945 258 AQAAE--I--YGLDILA 270 (398)
Q Consensus 258 ~~aA~--~--ygL~il~ 270 (398)
+.+.. . .++.++.
T Consensus 152 P~~~~a~~~~~~~~~~~ 168 (283)
T 3hn0_A 152 PFLSIALRKDSSLRITA 168 (283)
T ss_dssp THHHHHHHHCTTCEEEE
T ss_pred cHHHHHHhhCCCeEEEe
Confidence 44332 1 2466554
No 127
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=37.39 E-value=62 Score=27.82 Aligned_cols=115 Identities=9% Similarity=-0.066 Sum_probs=61.2
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcC-CeEEEEEEEEeeeEeeecCCCC---CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH-RLHIVGEVQLVVNHCLLGLPGV---LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~-~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~- 208 (398)
++++... ++.++++++.+|++|+++..+..+. +..+.+.-. .+ ......++.+++. +++|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~-----~~~~~~~~~~p~-------~~~~~~~~~~~~~~i~~~~dL~g 148 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFTITP-----ERKRIYNFSEPY-------YQDAIGLLVLKEKKYKSLADMKG 148 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCBCCH-----HHHTTEEECSCS-------EEEEEEEEEEGGGCCCSGGGCTT
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCccCH-----HHHhcCcccccc-------eeCceEEEEeCCCCCCCHHHhCC
Confidence 4566665 5789999999999999875442111 111111101 11 1122334443321 233332
Q ss_pred -EEEecH--HHHHHHHHHHhhcC--CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 -RVFSHP--QALAQCEMTLSNLG--IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 -~V~SHp--qal~QC~~fl~~~~--~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|.... ......+.++.+.+ ...+.+.|..++.+.+..+. -.|++.+...+..
T Consensus 149 ~~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 206 (259)
T 2v25_A 149 ANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKR--VDAFSVDKSILLG 206 (259)
T ss_dssp CEEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHTT
T ss_pred CEEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCC--CcEEEecHHHHHH
Confidence 343222 11223344555544 36778889999999988753 3477776665543
No 128
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=36.63 E-value=35 Score=29.21 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=62.3
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC----CccCcc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I~- 208 (398)
++++... +|.+++.++.+|++|+++-.+.-+.+ ....+.-.. -+......++.+++. ++++++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~~~s~------p~~~~~~~l~~~~~~~~~~~~~dL~g 111 (239)
T 1lst_A 44 KCTWVAS-DFDALIPSLKAKKIDAIISSLSITDK-----RQQEIAFSD------KLYAADSRLIAAKGSPIQPTLESLKG 111 (239)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH-----HHHHCEECS------CSBCCCEEEEEETTCCCCSSHHHHTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEECcCcCHH-----Hhhceeecc------cceeCceEEEEeCCCCCCCCHHHhCC
Confidence 4566665 89999999999999998643322211 111111010 011123344554442 233332
Q ss_pred -EEEecHH--HHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015945 209 -RVFSHPQ--ALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 209 -~V~SHpq--al~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~ 262 (398)
+|....- .....++++...+++.+.+.|..++.+++..+. -.|++++...+.
T Consensus 112 ~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~ 166 (239)
T 1lst_A 112 KHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDEVAAS 166 (239)
T ss_dssp CEEEEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHH
T ss_pred CEEEEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCcHHHH
Confidence 3433221 111122333234688889999999999998753 347787776654
No 129
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=36.08 E-value=63 Score=28.66 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=34.6
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHH--HHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAA--FKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v--~~aV~~g~~d~gvVP 161 (398)
...+|++ ..|+..+...+. +|. +++.+.+..++ +++|.+|++| +++.
T Consensus 131 ~g~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~ 179 (271)
T 2iee_A 131 KGKKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILN 179 (271)
T ss_dssp TTCEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEE
T ss_pred CCCEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEec
Confidence 3468887 467765554443 444 77788888889 9999999999 7764
No 130
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=35.87 E-value=39 Score=31.98 Aligned_cols=51 Identities=22% Similarity=0.066 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC---C-C---CccccCCCHHHHHHHHHcCCccEEEEee
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY---P-K---CETVPCDQFEAAFKAVELWLVDKAVLPI 162 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f---g-~---~~~~~~~s~~~v~~aV~~g~~d~gvVPI 162 (398)
..+|++ |..|+-++.++..++ | + +..+++.+..+++.++.+|++|.++...
T Consensus 146 gk~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 146 GKRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp TSEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 467875 677888887766544 3 2 2346889999999999999999998754
No 131
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=35.71 E-value=2.2e+02 Score=28.03 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=53.8
Q ss_pred CeEEecCCHHHHHHHHHhcCCCCeEEEcCHHh---HHHcCCceeecccccCCCCceEEEEEecC--CCCC--C--CCCCc
Q 015945 229 IVRISADDTAGAAQMVASIGERDTGAVASAQA---AEIYGLDILAEKIQDDDDNVTRFLILARE--PIIA--G--TDRPY 299 (398)
Q Consensus 229 ~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~a---A~~ygL~il~~~I~D~~~N~TRF~vi~~~--~~~~--~--~~~~~ 299 (398)
.+.+..-|..++.+++..+. -+--..| |..+|.++.-.|-.+. .-=|.|.--... ...+ + ....+
T Consensus 190 a~~i~~is~~e~~el~~~Ga-----~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~ 263 (421)
T 3ab4_A 190 AQKLEKLSFEEMLELAAVGS-----KILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKS 263 (421)
T ss_dssp CCBCSEECHHHHHHHHHTTC-----CSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECS
T ss_pred CeEccccCHHHHHHHHhcCC-----cCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCC
Confidence 34444445566666655421 1222223 3457777766554443 444655310000 0111 0 01123
Q ss_pred eEEEEEE-eCCCcchHHHHHHHHHhCCceeeeee
Q 015945 300 KTSIVFT-LEEGPGMLFKALAVFALRDINLTKIE 332 (398)
Q Consensus 300 ktsi~f~-~~~~pGaL~~~L~~F~~~~INLt~IE 332 (398)
-+.|.+. .+++||.+.++++.|+++|||+-.|-
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~ 297 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 297 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEE
Confidence 3444443 68999999999999999999999984
No 132
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=34.82 E-value=79 Score=27.26 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.3
Q ss_pred ceEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 015945 299 YKTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 332 (398)
Q Consensus 299 ~ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~IE 332 (398)
.+.|++- ...+.||.+.++++.+++.|||+..|-
T Consensus 96 a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 96 GKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 3556664 356899999999999999999999985
No 133
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=34.78 E-value=72 Score=30.20 Aligned_cols=89 Identities=12% Similarity=-0.047 Sum_probs=53.5
Q ss_pred ceeEEEEEc-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCC
Q 015945 110 TKVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHR 181 (398)
Q Consensus 110 ~~~kVa~lG-p~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~ 181 (398)
+..+|++.+ |.....+.++...+ | .++++.+.++.+.-.++.+|++|+...--. +.++.+. .++
T Consensus 23 ~tIkVG~~~~p~~~il~~~~k~~l~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~g~~ 94 (275)
T 3gxa_A 23 KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHK--------PYLDDFKKEHNLD 94 (275)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECH--------HHHHHHHHHHTCC
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHcCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCH--------HHHHHHHHHcCCC
Confidence 568999984 32222222233344 3 478999999999999999999999986433 4555443 246
Q ss_pred eEEEEEEEEeeeEeeecCCCCCccCc
Q 015945 182 LHIVGEVQLVVNHCLLGLPGVLKEEL 207 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~~l~~I 207 (398)
|..++.+.... ..|.+.+-.+++++
T Consensus 95 Lv~v~~~~~~p-~glYS~kiksl~dL 119 (275)
T 3gxa_A 95 ITEVFQVPTAP-LGLYPGKLKSLEEV 119 (275)
T ss_dssp EEEEEECCBCC-CEEEESSCCCGGGC
T ss_pred EEEEeeccccc-eEEecCCCCCHHHc
Confidence 66666544221 34444433333333
No 134
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=34.55 E-value=30 Score=31.82 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.4
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC---C----CCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f---g----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
..+|++.+ .|+.++...+.++ | ++++++..+..+++.++.+|++|.++++
T Consensus 138 Gk~i~~~~-~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 138 GRKIGVTA-PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEECC-CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 46888765 5766665554433 3 3567888888899999999999999986
No 135
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=34.22 E-value=2.9e+02 Score=25.68 Aligned_cols=173 Identities=8% Similarity=-0.037 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCcHHHHHHHHhC--------CCCccccCC-----CHHHHHHHHHcCCccEEEEeeccc------------
Q 015945 111 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENS------------ 165 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~f--------g~~~~~~~~-----s~~~v~~aV~~g~~d~gvVPIENS------------ 165 (398)
..|+++..|+|+..+.++..+- |.+++..+. +..+++++|..|.+|++++.....
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~l 83 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcC
Confidence 4688887778876666664321 234443333 358999999999999998764210
Q ss_pred -------------c-ccchH-HhHHhh-hcCCeEEEEEEEEeeeEeeecCCCCCccCcc--EEEecHHHHHHHHHHHhhc
Q 015945 166 -------------V-GGSIH-RNYDLL-LRHRLHIVGEVQLVVNHCLLGLPGVLKEELK--RVFSHPQALAQCEMTLSNL 227 (398)
Q Consensus 166 -------------~-~G~V~-~tld~L-~~~~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~--~V~SHpqal~QC~~fl~~~ 227 (398)
. +|.+. +.++.+ .+.++++.+-......+....+|=.+++|++ +|..-+.. -...+++..
T Consensus 84 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~al 161 (312)
T 2xwv_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYV 161 (312)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHH
T ss_pred CcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHc
Confidence 0 12111 111222 2357888887776665443323323556665 55554422 235677888
Q ss_pred CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCce-EEEEEec
Q 015945 228 GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT-RFLILAR 288 (398)
Q Consensus 228 ~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~T-RF~vi~~ 288 (398)
++..++..- ++....+..+ .-+ |+..+.......++.-+++.+.......+ -++++++
T Consensus 162 Ga~pv~m~~-~Evy~ALq~G-~vD-g~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 162 GASPTPMAF-SEVYLALQTN-AVD-GQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp TCEEEECCG-GGHHHHHHTT-SSS-EEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC-Ccc-eEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 887765433 3333333332 223 56666555555566545555544434433 3444544
No 136
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=33.77 E-value=46 Score=28.11 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEee-eEeeecCCCC--CccCcc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVV-NHCLLGLPGV--LKEELK-- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I-~h~Ll~~~g~--~l~~I~-- 208 (398)
++++... +|.+++.++.+|++|+++.++.-+.+ ..+ .+.... -.... ...++++++. ++++++
T Consensus 46 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~-----~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL~g~ 113 (229)
T 2y7i_A 46 ECSFTNQ-SFDSLIPSLRFKKFDAVIAGMDMTPK-----REQ-----QVSFSQ-PYYEGLSAVVVTRKGAYHTFADLKGK 113 (229)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH-----HHT-----TSEECS-CSBCCCCEEEEEETTSCCSTGGGTTC
T ss_pred eEEEEEc-CHHHHHHHHhCCCceEEEecCccCHH-----Hhc-----ceeecc-ccccCCcEEEEEeCCCCCCHHHHCCC
Confidence 4566664 89999999999999998633321111 101 111100 01122 3445554432 233332
Q ss_pred EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|.... .... ..+|.+ ++..++.+.|..++.+++..+. -.|+|++...+..
T Consensus 114 ~v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~ 166 (229)
T 2y7i_A 114 KVGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNNR--LEGVFGDVAAIGK 166 (229)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcCC--cCEEEechHHHHH
Confidence 443322 1111 346665 3678888999999999998753 3477777766554
No 137
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=33.64 E-value=1e+02 Score=26.26 Aligned_cols=115 Identities=8% Similarity=-0.063 Sum_probs=61.5
Q ss_pred CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCC-CC---CccCcc--
Q 015945 135 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLP-GV---LKEELK-- 208 (398)
Q Consensus 135 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~-g~---~l~~I~-- 208 (398)
+++... +|.+++.++.+|++|+++.++..+.+ .-..+. . ..-+......++.++ +. ++++++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~-----~-s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYTKE-----RAEKYL-----Y-AAPIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCCHH-----HHHHEE-----E-CCCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccChh-----hhhcee-----e-ccceecCceEEEEECCCCCCCCHHHhCCC
Confidence 456666 99999999999999998644332211 111110 0 011222334555554 32 334442
Q ss_pred EEEecH--HHHHHHHHHHhhc---CCeEEec-CCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHP--QALAQCEMTLSNL---GIVRISA-DDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHp--qal~QC~~fl~~~---~~~~v~~-~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|.... ........++... .+.++.. .|..++.+++..+. -.|+|++...+..
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ--FDYKIFDKIGVET 175 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC--ceEEEecHHHHHH
Confidence 443322 2223344444443 2455544 48889999988753 4477777666543
No 138
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=32.32 E-value=76 Score=28.56 Aligned_cols=114 Identities=9% Similarity=0.026 Sum_probs=64.7
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCcc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I~-- 208 (398)
++++...+ |.++++++.+|++|+++..+..+.+ - ...+... .-+......++++++. +++|++
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~-----r-----~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk 165 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFTQTPE-----R-----AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQ 165 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCBCCHH-----H-----HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTS
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCCCChH-----H-----Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCC
Confidence 45666665 7899999999999998754331111 0 0111111 1122334566666543 334442
Q ss_pred EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|..- ..-.. ..+|.+ .+..++.+.+..++.+++..+. -.|++++...+..
T Consensus 166 ~v~~~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 166 TLLVN-KGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDGR--GVALAHDNALLWA 218 (291)
T ss_dssp EEEEE-TTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEe-cCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 45442 22222 234554 3678888899999999998753 3477776665543
No 139
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=32.22 E-value=72 Score=27.15 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=68.8
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeE
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 183 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~ 183 (398)
++..+|++...-+.+ ....+ ++.++++++. ...+..++.+.|.+|++|+|++.......+.. ...|.+..+.
T Consensus 7 ~g~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l~---~~~l~~~~~~ 83 (218)
T 2y7p_A 7 TRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFF---QRRLFRHRYV 83 (218)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTEE---EEEEEEECEE
T ss_pred ceEEEEEecHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCccee---EEEeeeccEE
Confidence 456777764322221 11111 2245666543 23456788999999999999975321111100 0011111111
Q ss_pred EEEEEEEeeeEeeecCCCCCccCcc---EEEe-cH-HHHHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEE
Q 015945 184 IVGEVQLVVNHCLLGLPGVLKEELK---RVFS-HP-QALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAV 255 (398)
Q Consensus 184 I~~Ei~l~I~h~Ll~~~g~~l~~I~---~V~S-Hp-qal~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI 255 (398)
+.+|-.|-|.. +..+++++. -|.. .+ ....+..+++.+.+. . ...++|...+..+|+.+ ...||
T Consensus 84 ----~v~~~~hpla~-~~i~l~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g---~Giai 155 (218)
T 2y7p_A 84 ----CMFRKDHPSAK-SPMSLKQFTELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIAT 155 (218)
T ss_dssp ----EEEETTCSSCC-SSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEE
T ss_pred ----EEEcCCCCCCC-CCCCHHHHhhCCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCC---CEEEE
Confidence 12334444443 233444442 2322 21 112334555555443 2 34677777777788765 23666
Q ss_pred cCHHhHH
Q 015945 256 ASAQAAE 262 (398)
Q Consensus 256 ~s~~aA~ 262 (398)
.+..++.
T Consensus 156 lp~~~~~ 162 (218)
T 2y7p_A 156 VPQRFAV 162 (218)
T ss_dssp EEHHHHH
T ss_pred cHHHHHH
Confidence 6766543
No 140
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=31.98 E-value=2.1e+02 Score=23.37 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=69.0
Q ss_pred ceeEEEEEcCCCc--HHHHHH--HHhCCCCcc-ccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEE
Q 015945 110 TKVRVAYQGLPGA--YSEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 184 (398)
Q Consensus 110 ~~~kVa~lGp~Gs--~s~~AA--~~~fg~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I 184 (398)
+..+|++...-+. +....+ ++.++++++ +...+..++.+.+.+|++|+|++.-.....+... ..|.+..+.+
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 81 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPMV 81 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCEE
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceEE
Confidence 4567887644332 233222 224566554 2345678899999999999999864321111100 0111111111
Q ss_pred EEEEEEeeeEeeecCC-CCCccCc---cEEEecHHHH-HHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEc
Q 015945 185 VGEVQLVVNHCLLGLP-GVLKEEL---KRVFSHPQAL-AQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVA 256 (398)
Q Consensus 185 ~~Ei~l~I~h~Ll~~~-g~~l~~I---~~V~SHpqal-~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI~ 256 (398)
..+-.|-|...+ ..+++++ .-|...+... .+..+|+.+.+. . ...++|...+.++|+.+. + .|+.
T Consensus 82 ----v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~--G-i~~l 154 (209)
T 2ql3_A 82 ----VLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRGL--G-WTLL 154 (209)
T ss_dssp ----EEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHTS--C-BEEE
T ss_pred ----EEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCC--e-EEEe
Confidence 223334343332 2334444 3343322222 334556655332 2 456778887888887652 3 5555
Q ss_pred CH
Q 015945 257 SA 258 (398)
Q Consensus 257 s~ 258 (398)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 44
No 141
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=31.38 E-value=2.9e+02 Score=24.78 Aligned_cols=138 Identities=7% Similarity=0.036 Sum_probs=0.0
Q ss_pred CceeEEEEEcCCCcH-------HHHHHHHhCC-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhc-
Q 015945 109 GTKVRVAYQGLPGAY-------SEAAARKAYP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR- 179 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~-------s~~AA~~~fg-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~- 179 (398)
+++.+|++.++.|++ .+...+.+.| .+++....+..+.+++|.+|++|++++... .....+..
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~--------~~~~~~~~~ 89 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQND--------IAYYAYQGC 89 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHTC
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccH--------hHHHHhcCC
Q ss_pred ----------CCeEEEEEEEEeeeEeeecCCCCCccCccEEEecHHHH--------HHHHHHHhhcCCe-----EEecCC
Q 015945 180 ----------HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQAL--------AQCEMTLSNLGIV-----RISADD 236 (398)
Q Consensus 180 ----------~~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~~V~SHpqal--------~QC~~fl~~~~~~-----~v~~~S 236 (398)
.++..++ ....-...|+++++..+.++..+..++.+. .....++++.++. .+...+
T Consensus 90 ~~~~~~~~~~~~~~~v~-~~~~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~ 168 (314)
T 1us5_A 90 CIPAFEGKPVKTIRALA-ALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVS 168 (314)
T ss_dssp SSTTTTTCCCTTEEEEE-EEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCC
T ss_pred CCCCCCCCCccchhehh-hcCcceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCC
Q ss_pred HHHHHHHHHhcCCCCeEEEcC
Q 015945 237 TAGAAQMVASIGERDTGAVAS 257 (398)
Q Consensus 237 TA~Aa~~v~~~~~~~~AAI~s 257 (398)
.+++...+..+. -.+++.+
T Consensus 169 ~~~~~~al~~G~--vda~~~~ 187 (314)
T 1us5_A 169 ASQGIQLMQDKR--ADALFYT 187 (314)
T ss_dssp HHHHHHHHHTTS--CSEEEEE
T ss_pred HHHHHHHHHcCC--ccEEEEc
No 142
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=31.25 E-value=43 Score=29.13 Aligned_cols=113 Identities=7% Similarity=-0.093 Sum_probs=62.2
Q ss_pred CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC-----CccCcc-
Q 015945 135 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK- 208 (398)
Q Consensus 135 ~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~-----~l~~I~- 208 (398)
+++... +|.+++.++.+|++|+++-++..+.+ -...+ ... .-+......++.+++. ++++++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~-----~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMKPE-----RCAAV-----AYS-QPILCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCCHH-----HHTTS-----EEC-SCCCEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCCHH-----HHhcc-----ccc-cchhcCceEEEEECCCccCCCCHHHHhc
Confidence 566665 59999999999999988644332211 10111 000 0111223455555442 233333
Q ss_pred ----EEEecHHHHHHHHHHHhhc---CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 ----RVFSHPQALAQCEMTLSNL---GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ----~V~SHpqal~QC~~fl~~~---~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|....- ... ..+|.+. +.+++.+.|..++.+++..+. -.|+|++...+..
T Consensus 122 ~~g~~i~~~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~i~~~~~~~~ 179 (257)
T 2q88_A 122 NPDAKIGAPGG-GTE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDGR--IDVYSLPVLSIND 179 (257)
T ss_dssp CTTCCEEECTT-SHH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred cCCceEEEECC-ccc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcCC--CcEEEcCHHHHHH
Confidence 3433221 111 2455553 347788899999999998763 3477777665543
No 143
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=31.04 E-value=3.2e+02 Score=25.17 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=59.4
Q ss_pred ceeEEEEEc-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCC
Q 015945 110 TKVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHR 181 (398)
Q Consensus 110 ~~~kVa~lG-p~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~ 181 (398)
+..+||+.+ |.....+. +...| | .++++.+.++.+.-.++.+|++|++..--. +.++.+. .++
T Consensus 4 ~~i~VG~~~~p~~~i~~~-v~~~l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~--------pyl~~~~k~~g~~ 74 (246)
T 4ef1_A 4 SVLKVGASPVPHAEILEH-VKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHV--------PFFNEAVKENDYD 74 (246)
T ss_dssp EEEEEEECTTTHHHHHHH-HHHHHHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHTCC
T ss_pred cEEEEEEeCCChHHHHHH-HHHHHHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCH--------HHHHHHHHHCCCC
Confidence 457889873 33333333 33344 3 478999999999999999999999987533 3444432 357
Q ss_pred eEEEEEEEEeeeEeeecCCCCCccCcc
Q 015945 182 LHIVGEVQLVVNHCLLGLPGVLKEELK 208 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g~~l~~I~ 208 (398)
|..+|.+.+.. ..|.+.+-.++++++
T Consensus 75 Lv~v~~~~~~p-~glYS~kiksl~dL~ 100 (246)
T 4ef1_A 75 FVNAGAIHLEP-VGLYSKKYKSLQEIP 100 (246)
T ss_dssp EEEEEEEEECC-CEEECSSCSSGGGSC
T ss_pred EEEEeeccccc-eEEecCCCCCHHHcC
Confidence 77777765543 566776656778886
No 144
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=30.39 E-value=1.5e+02 Score=27.49 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=52.3
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh-cCCeEEEEEEEEeeeEeeecCCCC----CccCc-
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPGV----LKEEL- 207 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~-~~~l~I~~Ei~l~I~h~Ll~~~g~----~l~~I- 207 (398)
+++++...+..++.++|.+|++|+|+.... ..+.... ..++.+++-+.-.-...++..++. +++|.
T Consensus 39 dVei~~~~~~~~~~~al~sG~~D~g~~~~~--------~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLk 110 (342)
T 4esw_A 39 DIAILEPSNPSDVTELVGSGKVDMGLKAMV--------GTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLK 110 (342)
T ss_dssp EEEEEEESSGGGHHHHHHHTSSSEEEEEHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGT
T ss_pred eEEEEeCCChHHHHHHHHcCCcCEEEecHH--------HHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhC
Confidence 478889999999999999999999986533 2222222 236776666554333455543321 23333
Q ss_pred -cEEE-ecHHHHHHHHHHHhhcC
Q 015945 208 -KRVF-SHPQALAQCEMTLSNLG 228 (398)
Q Consensus 208 -~~V~-SHpqal~QC~~fl~~~~ 228 (398)
|+|. .........+.+|++.+
T Consensus 111 GK~ig~~~~~~~~~l~~~L~~~G 133 (342)
T 4esw_A 111 GKRIGYVGEFGKIQVDELTKHYG 133 (342)
T ss_dssp TCEEEESSSHHHHHHHHHHGGGT
T ss_pred CCEEEecCCchHHHHHHHHHHcC
Confidence 2443 22233456677888743
No 145
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=30.00 E-value=36 Score=29.11 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=26.8
Q ss_pred eEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 015945 300 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 332 (398)
Q Consensus 300 ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~IE 332 (398)
+.+++- ...+.||.+.++++.|+++|||+..|-
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 455543 345789999999999999999999985
No 146
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=29.51 E-value=3.1e+02 Score=24.56 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=58.8
Q ss_pred hCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCCCccCcc-
Q 015945 131 AYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK- 208 (398)
Q Consensus 131 ~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~- 208 (398)
.++++++. ...+..++.+.+.+|++|+|++.......|... ..|.+..+.+ ..+-.|-|.. ...+++++.
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----v~~~~hpl~~-~~i~~~dL~~ 201 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVC----MFRKDHPSAK-SPMSLKQFSE 201 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEE----EEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEE----EEeCCCCCcC-CCCCHHHHhc
Confidence 35665543 233446788999999999999864321111110 0011111111 1122222222 222333332
Q ss_pred --EE-EecHH-HHHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 --RV-FSHPQ-ALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 --~V-~SHpq-al~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
.| +..+. .......|+.+.+. . ...++|......+|+.+ ...||.+...+..
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 260 (315)
T 1uth_A 202 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAVR 260 (315)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHHH
T ss_pred CCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHHH
Confidence 23 22211 12345567766443 2 34667777777777765 3467777766653
No 147
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.30 E-value=35 Score=29.11 Aligned_cols=34 Identities=29% Similarity=0.239 Sum_probs=28.5
Q ss_pred ceEEEEE-EeCCCcchHHHHHHHHHhCCceeeeee
Q 015945 299 YKTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 332 (398)
Q Consensus 299 ~ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~IE 332 (398)
.|.|++- ..++.||.+.++++.+++.|||+..|-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 4677776 356799999999999999999997774
No 148
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=29.11 E-value=1.9e+02 Score=24.95 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=48.5
Q ss_pred ceeEEEEEcCCCcHHHHHHHHh---CC-CCc-cccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhh-hc--CC
Q 015945 110 TKVRVAYQGLPGAYSEAAARKA---YP-KCE-TVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR--HR 181 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~---fg-~~~-~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L-~~--~~ 181 (398)
...+|++. .|+..+.....+ .+ ... .....+..+++.+|.+|++|+.+.. . .+++.+ .. ..
T Consensus 117 ~g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---~------~~~~~~~~~~~~~ 185 (243)
T 4gvo_A 117 AGKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---P------FAVDFQNKTSAIK 185 (243)
T ss_dssp TTCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---H------HHHHHHHHTCSSC
T ss_pred cCCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---H------HHHHHHHhhCCCc
Confidence 34688875 466554444332 22 232 3467888999999999999976542 1 122222 22 25
Q ss_pred eEEEEEEEEeeeEeeecCCC
Q 015945 182 LHIVGEVQLVVNHCLLGLPG 201 (398)
Q Consensus 182 l~I~~Ei~l~I~h~Ll~~~g 201 (398)
+.+.++..-+...+++.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 186 EKVVGDVLSNAKVYFMLGKD 205 (243)
T ss_dssp EEEEEEEEECCEECCEECTT
T ss_pred eEEeccCCCCCcEEEEEeCC
Confidence 67777776666666665554
No 149
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=28.44 E-value=42 Score=31.51 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=35.1
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhC---C----CCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~f---g----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
+..+|++ +.|+.++...+.++ | +++++.. ++.+++.++.+|++|.++++
T Consensus 118 kGk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 118 KGKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp TTSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CCCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 4578988 47777666555444 3 2445544 68899999999999998875
No 150
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.14 E-value=1.5e+02 Score=22.88 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=62.2
Q ss_pred EEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCceEEEEEec
Q 015945 209 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 288 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~TRF~vi~~ 288 (398)
-|=.++......+.+|...+.++..+.|..+|.+.+.+.. + ...|.........|+.++..--++.....+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 12 IVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF-S-GVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC-C-EEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred EEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC-C-CEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 3445677778888888887888778888888888887643 3 3555443333334444444222222345688999987
Q ss_pred CCCCCCCCC--CceEEEEEEeCCCcchHHHHHHHH
Q 015945 289 EPIIAGTDR--PYKTSIVFTLEEGPGMLFKALAVF 321 (398)
Q Consensus 289 ~~~~~~~~~--~~ktsi~f~~~~~pGaL~~~L~~F 321 (398)
......... ..-..-++.-|-.+..|...|...
T Consensus 90 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 90 KNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 643211110 111223344354566666666554
No 151
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=27.57 E-value=3.2e+02 Score=24.11 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=59.0
Q ss_pred hCCCCcccc-CCCHHHHHHHHHcCCccEEEEe---eccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCC-----
Q 015945 131 AYPKCETVP-CDQFEAAFKAVELWLVDKAVLP---IENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG----- 201 (398)
Q Consensus 131 ~fg~~~~~~-~~s~~~v~~aV~~g~~d~gvVP---IENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g----- 201 (398)
.++++++.. ..+..++.+.+.+|++|+|++. -..... + +..+.......++++.++
T Consensus 126 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~-------------~--l~~~~l~~~~~~~v~~~~~pl~~ 190 (310)
T 2esn_A 126 SAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPE-------------G--IQAHDWFADRYVVVARRDHPRLA 190 (310)
T ss_dssp HSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCT-------------T--EEEEEEEEECEEEEEESSCTTCS
T ss_pred HCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccccCCc-------------C--cceeeeeccceEEEEeCCCCCcC
Confidence 356655432 2333567788999999999986 221111 1 111222222333333322
Q ss_pred --CCccCc---cEEEecHH-H-HHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 202 --VLKEEL---KRVFSHPQ-A-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 202 --~~l~~I---~~V~SHpq-a-l~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
.+++++ .-|.-.+. . -.....|+...+. . ...++|...+.++|..+ ...|+.+...++.
T Consensus 191 ~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 191 GAPTLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp SSCCHHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred CCCCHHHHhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 223332 23433221 1 1345567766443 3 35677777777788764 3467777776653
No 152
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=26.95 E-value=56 Score=27.74 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=52.7
Q ss_pred CCCcchhhhHHHhhhchhhHHHHHhhhhcccccccccCCCCCCchhhHHHHHhh--hhccCCCCccccccCCCccchhhc
Q 015945 25 VPNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERS--QDSQSSGFHKDLNLLPKPLSIMEL 102 (398)
Q Consensus 25 ~~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~k~~~P~rE~~~il~rl--~~~~~G~lp~~~i~~~~~I~R~ii 102 (398)
..+|..+|+|+.+++.+ +-.++.+ +-+..|+..+|..+ .....| +.-..+. |. ...
T Consensus 14 aa~L~~l~~ql~~l~~~---l~~l~~~-------------LP~~~em~~LL~~i~~~~~~~G-L~l~~~~-p~----~~~ 71 (147)
T 2rjz_A 14 AANLEAYKAQMKEMEES---FGALLRQ-------------LPSDTEVPGLLEDITRTGLGSG-LEFEEIK-LL----PEV 71 (147)
T ss_dssp CSSHHHHHHHHHHHHHH---HHHHHHT-------------TTGGGHHHHHHHHHHHHHHHTT-CEEEEEE-EC----CCE
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHh-------------CCChhHHHHHHHHHHHHHHhCC-CEEEEee-ec----Ccc
Confidence 46899999999999999 8888888 45677888999997 456677 5544444 11 112
Q ss_pred ccCCCCCceeEEEEEcCCCcHHHHH
Q 015945 103 SSSPDDGTKVRVAYQGLPGAYSEAA 127 (398)
Q Consensus 103 s~s~~~q~~~kVa~lGp~Gs~s~~A 127 (398)
......+-|.+|-+.| +|...+
T Consensus 72 ~~~~y~e~Pv~i~v~G---~Y~~l~ 93 (147)
T 2rjz_A 72 AQQFYIELPIQISVVG---GYHDLA 93 (147)
T ss_dssp ECSSEEEEEEEEEEEE---CHHHHH
T ss_pred ccCcEEEEeEEEEEEE---eHHHHH
Confidence 2223345677888754 575553
No 153
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=26.25 E-value=1.3e+02 Score=26.64 Aligned_cols=140 Identities=15% Similarity=0.083 Sum_probs=68.7
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCcc-ccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh-cCCe
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCET-VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRL 182 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~-~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~-~~~l 182 (398)
.+..+|++...-+.+ ..... +..++++++ +...+..++.+.+.+|++|+|++.-.....+... ..|. +..+
T Consensus 94 ~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 170 (306)
T 3fzv_A 94 AGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIET---EPLMPPQRP 170 (306)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEEE---EESSCCBCC
T ss_pred CceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccce---eeeeecccc
Confidence 456788876443332 11111 123566554 2345677889999999999999864432222111 1111 2222
Q ss_pred EEEEEEEEeeeEeeecCCCCCcc---CccEEEec-HHHHHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEE
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKE---ELKRVFSH-PQALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGAV 255 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~---~I~~V~SH-pqal~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AAI 255 (398)
.+ .++-.|-|...+..+++ +-.-|... +..-.....|+.+.+. . ...++|...+.++|..+. + .|+
T Consensus 171 ~~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~--G-ia~ 243 (306)
T 3fzv_A 171 HA----LLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGF--G-FSL 243 (306)
T ss_dssp EE----EEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTTS--C-BEE
T ss_pred EE----EecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC--C-EEE
Confidence 22 23344444333222222 23344332 2223344556665432 3 356677777777777642 3 444
Q ss_pred cCH
Q 015945 256 ASA 258 (398)
Q Consensus 256 ~s~ 258 (398)
.+.
T Consensus 244 lp~ 246 (306)
T 3fzv_A 244 LVT 246 (306)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
No 154
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=26.18 E-value=53 Score=33.82 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=28.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 015945 303 IVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 337 (398)
Q Consensus 303 i~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~ 337 (398)
+.|..|++||+|.+.|+.+.. +-|+|-.+=|.-.
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g 469 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHG 469 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCC
Confidence 779999999999999999975 6788888888643
No 155
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=26.09 E-value=1e+02 Score=28.50 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=44.8
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCC--CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhh
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL 177 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg--~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L 177 (398)
-..+|++. ++||-.+.-+|.+.. +.+++.. +|.++++++.+|+ .++|..+-...=.+.+.++.|
T Consensus 88 ~GkkIgvw-rkGSaaDVl~R~ll~~~g~eVvy~-Dw~di~~ml~~Ge--sAVva~~~~~G~~~ed~l~~l 153 (244)
T 3mst_A 88 SSGRIYTL-RKGTLADFNARILAYYDKAQVINA-DGDTCIKMANEGY--SALVGNEISIGKSFRNRMKEL 153 (244)
T ss_dssp TSSEEEES-STTSHHHHHHHHHHHHHTCEEEEC-CHHHHHHHHHTTC--EEEEETTTCCCEEHHHHHHHT
T ss_pred CCCeEecc-CCCcHHHHHHHHHHHHhCCeEEEC-CHHHHHHHHhCCC--cEEEeecccCceehhhhhhhc
Confidence 36788886 689988766665442 2677777 9999999999998 899988753332333334433
No 156
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=26.07 E-value=3.4e+02 Score=23.95 Aligned_cols=137 Identities=15% Similarity=0.092 Sum_probs=69.6
Q ss_pred ceeEEEEEcCCCc-H-HHHHH--HHhCCCCcccc-CCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEE
Q 015945 110 TKVRVAYQGLPGA-Y-SEAAA--RKAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 184 (398)
Q Consensus 110 ~~~kVa~lGp~Gs-~-s~~AA--~~~fg~~~~~~-~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I 184 (398)
+..+|++...-+. + ..... +..++++++.. ..+.+++.+.+.+|++|+|+........ ..+ +
T Consensus 92 g~l~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~-----------~~~--l 158 (305)
T 3fxq_A 92 GHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDI-----------DTD--L 158 (305)
T ss_dssp TEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGS-----------CTT--E
T ss_pred ceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCC-----------ccC--e
Confidence 5677877532221 1 11111 12456655432 2345678889999999999986432110 001 1
Q ss_pred EEEEEEeeeEeeecCCCC------CccCc---cEEE-ecHHH-HHHHHHHHhhcCC---e-EEecCCHHHHHHHHHhcCC
Q 015945 185 VGEVQLVVNHCLLGLPGV------LKEEL---KRVF-SHPQA-LAQCEMTLSNLGI---V-RISADDTAGAAQMVASIGE 249 (398)
Q Consensus 185 ~~Ei~l~I~h~Ll~~~g~------~l~~I---~~V~-SHpqa-l~QC~~fl~~~~~---~-~v~~~STA~Aa~~v~~~~~ 249 (398)
..+.......++++.++- +++++ .-|. +.... -....+|+.+.+. . ...++|...+.++|+.+
T Consensus 159 ~~~~L~~~~~~~v~~~~hpla~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g-- 236 (305)
T 3fxq_A 159 EAQPLYVSDVVIVGQRQHPMANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS-- 236 (305)
T ss_dssp EEEEEEECCEEEEEETTCTTTTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS--
T ss_pred eEEEeecCcEEEEEcCCCCCCCCCCHHHHhCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC--
Confidence 122222223333333321 23333 3343 22222 2456677776544 2 34667777777777765
Q ss_pred CCeEEEcCHHhHH
Q 015945 250 RDTGAVASAQAAE 262 (398)
Q Consensus 250 ~~~AAI~s~~aA~ 262 (398)
...|+.+...++
T Consensus 237 -~gia~lp~~~~~ 248 (305)
T 3fxq_A 237 -DLLTTMPRTLYE 248 (305)
T ss_dssp -SCEEEEEHHHHH
T ss_pred -CEEEEeeHHHHh
Confidence 347777877765
No 157
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=25.78 E-value=1.8e+02 Score=25.76 Aligned_cols=114 Identities=9% Similarity=0.025 Sum_probs=63.3
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCc--c
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 208 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I--~ 208 (398)
++++... +|.++++++.+|++|+++.++.-+. +.. ..+... .-+......++.+++. +++|+ +
T Consensus 87 ~~~~~~~-~~~~~~~~l~~G~~D~~~~~~~~~~-----~r~-----~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLV-EAANRVEFLKSNKVDIILANFTQTP-----QRA-----EQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBCCH-----HHH-----TTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEc-CHHHHHHHHhCCCeeEEeecCCCCc-----chh-----cceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 4566665 4789999999999999854332111 110 111111 1122333455555442 33444 2
Q ss_pred EEEecHHHHHHHHHHHhh--cCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHH
Q 015945 209 RVFSHPQALAQCEMTLSN--LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 263 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~--~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ 263 (398)
+|..-. .-. ...++.+ .+...+.+.|..++.+.+..+. -.|++.....+..
T Consensus 155 ~i~~~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNK-GTT-ADAYFTQNYPNIKTLKYDQNTETFAALMDKR--GDALSHDNTLLFA 207 (292)
T ss_dssp EEEEET-TSH-HHHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEeC-CCc-HHHHHHHhCCCceEEEcCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 454422 111 1345554 3678888999999999998753 3477776655543
No 158
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=25.69 E-value=72 Score=28.47 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=36.2
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
+..+|++-+ .|+-++...+.++...+++.. .+.++..++.+|++|.++++
T Consensus 95 kGk~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 95 EGLRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp TTCEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred CCCEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 557899864 456566666666665555444 34589999999999999986
No 159
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=25.51 E-value=3.7e+02 Score=24.15 Aligned_cols=138 Identities=13% Similarity=0.065 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCc--HHHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEE
Q 015945 111 KVRVAYQGLPGA--YSEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIV 185 (398)
Q Consensus 111 ~~kVa~lGp~Gs--~s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~ 185 (398)
..+|++...-+. +....+ +..++++++. ...+..+..+.+.+|++|+|++.......|... ..+.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~----------~~L~ 160 (313)
T 2h98_A 91 TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR----------IMLH 160 (313)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE----------EEEE
T ss_pred EEEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCCCCCCeeE----------EEee
Confidence 677777544332 222222 2246666553 345678899999999999999854321111100 0111
Q ss_pred EE---EEEeeeEeeec-CCC-CCccCc---cEEEecH----HHHHHHHHHHhhcCC---eEEecCCHHHHHHHHHhcCCC
Q 015945 186 GE---VQLVVNHCLLG-LPG-VLKEEL---KRVFSHP----QALAQCEMTLSNLGI---VRISADDTAGAAQMVASIGER 250 (398)
Q Consensus 186 ~E---i~l~I~h~Ll~-~~g-~~l~~I---~~V~SHp----qal~QC~~fl~~~~~---~~v~~~STA~Aa~~v~~~~~~ 250 (398)
.+ +..+-.|-|.. ... .+++++ .-|.-.+ ....+..+|+...+. ....++|...+.++|+.+
T Consensus 161 ~~~~~~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g--- 237 (313)
T 2h98_A 161 KEQLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAG--- 237 (313)
T ss_dssp EEEEEEEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHTT---
T ss_pred eCcEEEEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHcC---
Confidence 11 11222333433 222 334443 3444221 123445566665432 245677777777888765
Q ss_pred CeEEEcCHHhH
Q 015945 251 DTGAVASAQAA 261 (398)
Q Consensus 251 ~~AAI~s~~aA 261 (398)
...|+.+...+
T Consensus 238 ~Gia~lp~~~~ 248 (313)
T 2h98_A 238 EGVCIVPASAM 248 (313)
T ss_dssp SCBEEEEGGGG
T ss_pred CcEEEeehhhh
Confidence 23566666544
No 160
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.43 E-value=61 Score=24.91 Aligned_cols=38 Identities=16% Similarity=-0.029 Sum_probs=30.2
Q ss_pred EEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhc
Q 015945 210 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASI 247 (398)
Q Consensus 210 V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~ 247 (398)
|-.++......+.+|++.+.....+.|..+|.+.+.+.
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~ 49 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF 49 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc
Confidence 44577777888888988788888888888888888764
No 161
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=24.60 E-value=1.5e+02 Score=24.00 Aligned_cols=67 Identities=4% Similarity=-0.047 Sum_probs=43.7
Q ss_pred eEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHH---HHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEE
Q 015945 112 VRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAA---FKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 184 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v---~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I 184 (398)
+||++.|-+-+. .-+....++..++.+.+++ |+.+.+. |+|++=|...+.-.+.+++|-+.+..+..
T Consensus 3 mKiaVIGD~Dtv----~GFrLaGie~~~v~~~ee~~~~~~~l~~~--digIIlIte~ia~~i~~~i~~~~~~~~P~ 72 (115)
T 3aon_B 3 YKIGVVGDKDSV----SPFRLFGFDVQHGTTKTEIRKTIDEMAKN--EYGVIYITEQCANLVPETIERYKGQLTPA 72 (115)
T ss_dssp EEEEEESCHHHH----GGGGGGTCEEECCCSHHHHHHHHHHHHHT--TEEEEEEEHHHHTTCHHHHHHHHTSSSCE
T ss_pred eEEEEEECHHHH----HHHHHcCCeEEEeCCHHHHHHHHHHHHhc--CceEEEEeHHHHHHhHHHHHHHhCCCCCE
Confidence 689999874331 1111223455566666655 5555554 99999999999989999988865443433
No 162
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=23.86 E-value=46 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh
Q 015945 143 FEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL 178 (398)
Q Consensus 143 ~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~ 178 (398)
.+++++.+++..+.|-+=|.+.++||.+.+.++++.
T Consensus 35 Va~~i~vi~~sGL~y~~~pmgT~IEGe~devm~vvk 70 (106)
T 1vk8_A 35 IDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVK 70 (106)
T ss_dssp HHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEeCCCccEEEcCHHHHHHHHH
Confidence 346778888888999999999999999988888764
No 163
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=23.76 E-value=41 Score=29.07 Aligned_cols=26 Identities=8% Similarity=-0.034 Sum_probs=23.0
Q ss_pred CCcchhhhHHHhhhchhhHHHHHhhhhcccc
Q 015945 26 PNRCGFGLDLRVLNKWECTCVGVLAQTHRAI 56 (398)
Q Consensus 26 ~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~ 56 (398)
+.|+.+|-+||+++.+ |+..|++ .++
T Consensus 91 ~~l~~~R~~l~~l~~~---ll~~l~~--~l~ 116 (156)
T 2gbb_A 91 KPLDDVRANIGELSTK---ILEQIAE--ELK 116 (156)
T ss_dssp CCHHHHHHHHHHHHHH---HHHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHH---HHHHHHH--HHH
Confidence 3689999999999999 9999999 553
No 164
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.47 E-value=51 Score=25.75 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=49.2
Q ss_pred EEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccC-CCCceEEEEEec
Q 015945 210 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILAR 288 (398)
Q Consensus 210 V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~-~~N~TRF~vi~~ 288 (398)
|-.++......+.+|.+.+.....+.|..+|.+.+.+.. ++ ..|.........|+.++.. |... ....+.+++++.
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~d-lvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-YA-AMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-CS-EEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-CC-EEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEec
Confidence 445677778888999888888888888888888887653 34 4454433333445554442 3322 344578888875
Q ss_pred C
Q 015945 289 E 289 (398)
Q Consensus 289 ~ 289 (398)
.
T Consensus 89 ~ 89 (140)
T 3grc_A 89 N 89 (140)
T ss_dssp T
T ss_pred C
Confidence 4
No 165
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=23.43 E-value=79 Score=29.09 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=35.6
Q ss_pred ceeEEEEEcCCCcHHHHHHHHhC---C----CCccccCCCHHHHHHHHHcCCccEEEEe
Q 015945 110 TKVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 161 (398)
Q Consensus 110 ~~~kVa~lGp~Gs~s~~AA~~~f---g----~~~~~~~~s~~~v~~aV~~g~~d~gvVP 161 (398)
+..+|++. .|+.++...+.++ | +++++.. ++.+++.++.+|++|.+++.
T Consensus 130 kGk~i~v~--~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 130 KGKRIAFQ--KGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp TTCEEEEC--TTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEec--CCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 35789873 7887766555443 3 2455555 78999999999999998775
No 166
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=23.16 E-value=86 Score=28.14 Aligned_cols=113 Identities=8% Similarity=0.017 Sum_probs=64.4
Q ss_pred CCccccCCCHHHHHHHHHcCCccEEEEeecc-ccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCC---CccCc--
Q 015945 134 KCETVPCDQFEAAFKAVELWLVDKAVLPIEN-SVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL-- 207 (398)
Q Consensus 134 ~~~~~~~~s~~~v~~aV~~g~~d~gvVPIEN-S~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~---~l~~I-- 207 (398)
++++...+ |.++++++.+|++|+++..+.. +. +....+.-.. -+......++++++. +++|+
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~t~-----~r~~~~~~~~------p~~~~~~~l~~~~~~~i~s~~dL~G 164 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGLTSP-----ERQATFDKSE------PYSWSGAVLVAHNDSNIKSIADIKG 164 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCCCSH-----HHHHHEEECS------CSEEECEEEEEETTCSCCSGGGCTT
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCccCCh-----hhhcceEecc------CeeeecEEEEEECCCCCCCHHHhCC
Confidence 46777776 9999999999999998754321 11 1111111011 011223455555442 34444
Q ss_pred cEEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHH
Q 015945 208 KRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAE 262 (398)
Q Consensus 208 ~~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~ 262 (398)
++|..-.-. . -..+|.+.+++++.+.+..++.+.+..+. -.|++.....+.
T Consensus 165 ~~v~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~i~~~~~~~ 215 (283)
T 2yln_A 165 VKTAQSLTS-N-YGEKAKAAGAQLVPVDGLAQSLTLIEQKR--ADATLNDELAVL 215 (283)
T ss_dssp SEEEECTTS-H-HHHHHHHTTCEEEECSSHHHHHHHHHTTS--CCEEEEEHHHHH
T ss_pred CEEEEecCc-h-HHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 245432211 1 22356666788888889999999988753 346777665544
No 167
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=23.05 E-value=1.6e+02 Score=27.32 Aligned_cols=88 Identities=13% Similarity=-0.048 Sum_probs=53.8
Q ss_pred eeEEEEEc-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---cCCe
Q 015945 111 KVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRL 182 (398)
Q Consensus 111 ~~kVa~lG-p~Gs~s~~AA~~~f---g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~~~l 182 (398)
..+||+.+ |.+..-+.++...+ | .++++.+.++.+.-.++.+|++|....--. +.++.+. .++|
T Consensus 2 ~ikVG~~~~p~~~il~~~~k~~l~k~Gi~leiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyL~~~nk~~g~~L 73 (245)
T 3ir1_A 2 EIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHK--------PYLDDFKKEHNLDI 73 (245)
T ss_dssp EEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECH--------HHHHHHHHHHTCCE
T ss_pred eEEEEEcCCChHHHHHHHHHHHHHHcCceEEEEEeCCcHhHHHHHHCCCcCeeccCCH--------HHHHHHHHHcCCCE
Confidence 46788873 33332233333344 3 478899999999999999999999877543 5555543 3467
Q ss_pred EEEEEEEEeeeEeeecCCCCCccCc
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKEEL 207 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~~I 207 (398)
..+|.+.+.- ..|.+.+-.+++++
T Consensus 74 v~v~~~~~~p-~glYS~k~ksl~dl 97 (245)
T 3ir1_A 74 TEVFQVPTAP-LGLYPGKLKSLEEV 97 (245)
T ss_dssp EEEEECCBCC-CEEEESSCCCGGGC
T ss_pred EEEeeecccc-eEEecCCCCCHHHc
Confidence 6666654322 34555443344444
No 168
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=22.13 E-value=83 Score=32.26 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=58.4
Q ss_pred HHHcCCceeecccccCCCCceEEEEEecCC-CCCC----CCCCceEEEEEE---eCCCcchHHHHHHHHHhCCceeeeee
Q 015945 261 AEIYGLDILAEKIQDDDDNVTRFLILAREP-IIAG----TDRPYKTSIVFT---LEEGPGMLFKALAVFALRDINLTKIE 332 (398)
Q Consensus 261 A~~ygL~il~~~I~D~~~N~TRF~vi~~~~-~~~~----~~~~~ktsi~f~---~~~~pGaL~~~L~~F~~~~INLt~IE 332 (398)
|..+|.++.-.|-.+...-=|.|. .... ..+. ....+-+.|-+. ..+.||-+.++++.|+++|||+-.|-
T Consensus 299 a~~~gIpv~I~n~~~p~~~GT~I~--~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ 376 (510)
T 2cdq_A 299 AREGEIPVRVKNSYNPKAPGTIIT--KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA 376 (510)
T ss_dssp HHHHTCCEEEEETTSTTSCCEEEE--SCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCeEEEEccCcCCCCCeEEe--ccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE
Confidence 345788888877765444457663 1111 0000 011223334443 35689999999999999999999995
Q ss_pred eeeCCCCCCccccCCCCCCCcccceEEEEEeecCC----CcHHHHHHHHHHHH
Q 015945 333 SRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASM----ADPRAQFALGHLQE 381 (398)
Q Consensus 333 SRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~----~d~~v~~al~~L~~ 381 (398)
|- . -...|.|+-+... ....+..++++|..
T Consensus 377 ss----e---------------~sis~~v~~~~~~~~~~~~~~l~~~~~el~~ 410 (510)
T 2cdq_A 377 TS----E---------------VSISLTLDPSKLWSRELIQQELDHVVEELEK 410 (510)
T ss_dssp EE----T---------------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTT
T ss_pred eC----C---------------CeEEEEEechHhhhhhHHHHHHHHHHHHhCC
Confidence 42 1 2467888743211 12345556666654
No 169
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=21.83 E-value=1.9e+02 Score=26.70 Aligned_cols=90 Identities=9% Similarity=-0.066 Sum_probs=56.2
Q ss_pred CceeEEEEEc-CCCcHHHHHHHHhC----C-CCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhh---c
Q 015945 109 GTKVRVAYQG-LPGAYSEAAARKAY----P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---R 179 (398)
Q Consensus 109 q~~~kVa~lG-p~Gs~s~~AA~~~f----g-~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~---~ 179 (398)
.+..+||+.+ |....-+.+.. .+ | .++++.++++.+.-.|+.+|++|....--. +.++.+. .
T Consensus 6 ~~~ikVG~~~~p~~~il~~v~~-~l~k~~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQH~--------pyL~~~nk~~g 76 (245)
T 3up9_A 6 VVTLTVGATPSPHAKILTYIND-NLAADAGIKLDIVEYTDYVQPNTALNDGDLDANFYQTV--------PYLENAEKQFG 76 (245)
T ss_dssp CEEEEEEECTTTHHHHHHHHHH-HTHHHHTEEEEEEECSSSHHHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHC
T ss_pred CceEEEEEeCCChHHHHHHHHH-HHHHHcCCeEEEEEecCcccHHHHHHcCCCceeccCCH--------HHHHHHHHHCC
Confidence 3567898873 33332233222 23 4 578999999999999999999999987543 4555543 2
Q ss_pred CCeEEEEEEEEeeeEeeecCCCCCccCcc
Q 015945 180 HRLHIVGEVQLVVNHCLLGLPGVLKEELK 208 (398)
Q Consensus 180 ~~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~ 208 (398)
++|..++.+.+.- ..|.+.+-.++++++
T Consensus 77 ~~lv~v~~~~~~p-~giYS~k~ksl~dL~ 104 (245)
T 3up9_A 77 YNFEAGEGIHLEP-LGVFSNKHKSLDELP 104 (245)
T ss_dssp CCEEECCCCEECC-CEEECSSCSCGGGCC
T ss_pred CCEEEEeeecccc-eEEEeCCCCCHHHcC
Confidence 4676666655432 455565444444444
No 170
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=21.80 E-value=92 Score=24.36 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=50.4
Q ss_pred EEecHHHHHHHHHHHhhcCCe--EEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCceEEEEEe
Q 015945 210 VFSHPQALAQCEMTLSNLGIV--RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILA 287 (398)
Q Consensus 210 V~SHpqal~QC~~fl~~~~~~--~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~TRF~vi~ 287 (398)
|-.++......+.+|.+.+.. ...+.|..+|.+.+.+. .++ ..|.........|+.++..=-+......+.+++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~d-lii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KYD-LIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CCS-EEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CCC-EEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 445777778888999886554 66788888888887664 234 55555444455666655532222234567888887
Q ss_pred cCC
Q 015945 288 REP 290 (398)
Q Consensus 288 ~~~ 290 (398)
...
T Consensus 89 ~~~ 91 (144)
T 3kht_A 89 DNV 91 (144)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 171
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=21.48 E-value=93 Score=28.18 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCC----CccccCCCHHHHHHHHHc--CCccEEEEeeccccccchHHhHHhhh----cC
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPK----CETVPCDQFEAAFKAVEL--WLVDKAVLPIENSVGGSIHRNYDLLL----RH 180 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~----~~~~~~~s~~~v~~aV~~--g~~d~gvVPIENS~~G~V~~tld~L~----~~ 180 (398)
..+|++ ..|+..+...+..++. .......+.++++++|.+ |++|+.+..- .+++.+. ..
T Consensus 170 g~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~---------~~~~~~~~~~~~~ 238 (294)
T 2rc8_A 170 GFRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDK---------ALLDYEVSIDADC 238 (294)
T ss_dssp TCCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEH---------HHHHHHHHTCSSS
T ss_pred CeEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecH---------HHHHHHHhhCCCC
Confidence 557887 4677666555555542 233467899999999999 9999988752 1222221 12
Q ss_pred CeEEEEEEEEeeeEeeecCCC
Q 015945 181 RLHIVGEVQLVVNHCLLGLPG 201 (398)
Q Consensus 181 ~l~I~~Ei~l~I~h~Ll~~~g 201 (398)
++.+.++..-...++++.+++
T Consensus 239 ~l~~~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 239 KLLTVGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp CEEECSCCEEEEEECCEECTT
T ss_pred CEEEcCCcccccceEEEecCC
Confidence 466666544444555655554
No 172
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.45 E-value=53 Score=25.13 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred EecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccC-CCCceEEEEEecC
Q 015945 211 FSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILARE 289 (398)
Q Consensus 211 ~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~-~~N~TRF~vi~~~ 289 (398)
-.++......+.+|++.+..+..+.|..+|.+.+.+.. ++ ..|.........|+.++.. |... ....+.+++++..
T Consensus 10 dd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 10 EDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YD-AVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp CSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-CS-EEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-CC-EEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEECC
Confidence 34677778888889887778778888888888887643 44 4444333333444544442 2222 2456788888765
Q ss_pred C
Q 015945 290 P 290 (398)
Q Consensus 290 ~ 290 (398)
.
T Consensus 87 ~ 87 (127)
T 3i42_A 87 A 87 (127)
T ss_dssp -
T ss_pred c
Confidence 3
No 173
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=21.11 E-value=3.3e+02 Score=24.56 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=72.3
Q ss_pred CCcccc-CCCHHHHHHHHHcCCccEEEE-------eecccccc---chHHhHHhhh-----cCCeEEEEEEEEeeeEeee
Q 015945 134 KCETVP-CDQFEAAFKAVELWLVDKAVL-------PIENSVGG---SIHRNYDLLL-----RHRLHIVGEVQLVVNHCLL 197 (398)
Q Consensus 134 ~~~~~~-~~s~~~v~~aV~~g~~d~gvV-------PIENS~~G---~V~~tld~L~-----~~~l~I~~Ei~l~I~h~Ll 197 (398)
++++.. ..+...+++++.+|++|+++- .+-....- .-...++.+. +.++.+.+-....-.+.|+
T Consensus 35 ~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 114 (275)
T 1sw5_A 35 KAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALA 114 (275)
T ss_dssp CEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEE
T ss_pred cEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEE
Confidence 467776 667889999999999999852 11100000 0111333222 2478888877555557777
Q ss_pred cCC------CC-CccCcc------EEEecHHHHH---HHHHHHhhcCC--eEEecCCHHHHHHHHHhcCCCCeEEEcC-H
Q 015945 198 GLP------GV-LKEELK------RVFSHPQALA---QCEMTLSNLGI--VRISADDTAGAAQMVASIGERDTGAVAS-A 258 (398)
Q Consensus 198 ~~~------g~-~l~~I~------~V~SHpqal~---QC~~fl~~~~~--~~v~~~STA~Aa~~v~~~~~~~~AAI~s-~ 258 (398)
.++ +. +++|++ .+-+-+.-.. .-..+++.++. +.+...+.+.+.+.+.++ ..+.+.+-+ .
T Consensus 115 V~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~ 193 (275)
T 1sw5_A 115 VRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTD 193 (275)
T ss_dssp EEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTC
T ss_pred EeHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCC
Confidence 654 22 344443 2222222110 11225555443 233333555555555554 455555533 3
Q ss_pred HhHHHcCCceeecc
Q 015945 259 QAAEIYGLDILAEK 272 (398)
Q Consensus 259 ~aA~~ygL~il~~~ 272 (398)
..-..|+|.+|...
T Consensus 194 ~~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 194 SRVDLFNLKILEDD 207 (275)
T ss_dssp HHHHHTTEEECBCT
T ss_pred cchhcCCeEEccCC
Confidence 33456899988854
No 174
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=20.81 E-value=1e+02 Score=24.82 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=42.7
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHc--CCccEEEEeeccccccchHHhHHhhh
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVEL--WLVDKAVLPIENSVGGSIHRNYDLLL 178 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~--g~~d~gvVPIENS~~G~V~~tld~L~ 178 (398)
++||++.|-+.|..-. + ..| ++.....+.+++.+++.+ .+-|+|++=|...+.-.+.++++-+.
T Consensus 3 ~mkiaVIgD~dtv~GF--r-LaG-i~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~ 68 (109)
T 2d00_A 3 PVRMAVIADPETAQGF--R-LAG-LEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLM 68 (109)
T ss_dssp CCCEEEEECHHHHHHH--H-HTT-SEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHT
T ss_pred ccEEEEEeCHHHHHHH--H-HcC-CeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHH
Confidence 5789999875442211 1 233 355566666655444432 23589999999999999999998775
No 175
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.81 E-value=1e+02 Score=23.45 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred EEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCceEEEEEec
Q 015945 209 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 288 (398)
Q Consensus 209 ~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~TRF~vi~~ 288 (398)
-|=.++......+.+|++.+.....+.|..+|.+.+.+.. ++ ..|.........|+.++.. +... ...+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~t~ 87 (130)
T 3eod_A 12 IVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PD-LMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVISA 87 (130)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC-CS-EEEECCC-----CHHHHHH-HHHT-TCCCCEEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC-CC-EEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEEEc
Confidence 3445777778888899888888878888888888886542 33 5555544445566666553 2222 22456666665
Q ss_pred C
Q 015945 289 E 289 (398)
Q Consensus 289 ~ 289 (398)
.
T Consensus 88 ~ 88 (130)
T 3eod_A 88 T 88 (130)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=20.68 E-value=3.7e+02 Score=22.38 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=67.7
Q ss_pred CceeEEEEEcCCCcH--HHHHH--HHhCCCCccc-cCCCHHHHHHHHHcCCccEEEEeeccc-cccchHHhHHhhhcCCe
Q 015945 109 GTKVRVAYQGLPGAY--SEAAA--RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENS-VGGSIHRNYDLLLRHRL 182 (398)
Q Consensus 109 q~~~kVa~lGp~Gs~--s~~AA--~~~fg~~~~~-~~~s~~~v~~aV~~g~~d~gvVPIENS-~~G~V~~tld~L~~~~l 182 (398)
.+..+|++...-+.+ ....+ ++.|+++++. ...+..++.+.+.+|++|+|++.-... ..+... ..|.+..+
T Consensus 13 ~g~lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~~---~~l~~~~~ 89 (228)
T 2fyi_A 13 SGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA---FPWFRWHH 89 (228)
T ss_dssp CEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEEE---EEEEEECE
T ss_pred cceEEEeeccchHHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCceE---EEeeecce
Confidence 456777764322221 12111 2245666543 345678999999999999999852111 111100 00111111
Q ss_pred EEEEEEEEeeeEeeecCCCCCccCc---cEEEecH-HH-HHHHHHHHhhcCC--e-EEecCCHHHHHHHHHhcCCCCeEE
Q 015945 183 HIVGEVQLVVNHCLLGLPGVLKEEL---KRVFSHP-QA-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGA 254 (398)
Q Consensus 183 ~I~~Ei~l~I~h~Ll~~~g~~l~~I---~~V~SHp-qa-l~QC~~fl~~~~~--~-~v~~~STA~Aa~~v~~~~~~~~AA 254 (398)
. +..+-.|-|...+..+++++ .-|...+ .. ..+...++.+.+. . ...++|.....++|+.+. ..|
T Consensus 90 ~----~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~---Gia 162 (228)
T 2fyi_A 90 S----LLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGL---GIG 162 (228)
T ss_dssp E----EEEETTCGGGTSSSCCHHHHTTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTS---CEE
T ss_pred E----EEecCCCCccccCccCHHHHcCCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCC---CEE
Confidence 1 12233344433222333332 3343222 11 2334555555332 3 456777777778887752 356
Q ss_pred EcCHHh
Q 015945 255 VASAQA 260 (398)
Q Consensus 255 I~s~~a 260 (398)
+.+..+
T Consensus 163 ~lp~~~ 168 (228)
T 2fyi_A 163 LVAEQS 168 (228)
T ss_dssp EEEGGG
T ss_pred EeehHh
Confidence 666554
No 177
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=20.38 E-value=1.3e+02 Score=27.41 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=36.8
Q ss_pred eEEEEEcCCCcHHHHHHHH-hCCCCccccC-CCHHHHHHHHHcCCccEEEE
Q 015945 112 VRVAYQGLPGAYSEAAARK-AYPKCETVPC-DQFEAAFKAVELWLVDKAVL 160 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~-~fg~~~~~~~-~s~~~v~~aV~~g~~d~gvV 160 (398)
+|||++ .||..+..+.+ .|++.++... .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 799996 67876665443 4555555566 88999999999999999999
No 178
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.21 E-value=68 Score=24.59 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=45.6
Q ss_pred EEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccC-CCCceEEEEEec
Q 015945 210 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILAR 288 (398)
Q Consensus 210 V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~-~~N~TRF~vi~~ 288 (398)
|=.+|......+.+|++.+.+.+.+.|..+|.+.+.+. .++ ..|..-......|+.++.. +... ....+.+++++.
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~d-lvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 8 VDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TPD-LIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CCS-EEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CCC-EEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEec
Confidence 33567777788888888888888888888888887654 233 4444333333344444432 2221 223456666654
Q ss_pred C
Q 015945 289 E 289 (398)
Q Consensus 289 ~ 289 (398)
.
T Consensus 85 ~ 85 (122)
T 3gl9_A 85 K 85 (122)
T ss_dssp C
T ss_pred C
Confidence 3
Done!