Your job contains 1 sequence.
>015946
MLLSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSP
VIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQ
QLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS
VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS
HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD
TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAM
LLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPGS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015946
(397 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 551 3.0e-53 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 255 3.8e-20 2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 249 2.8e-19 1
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica... 249 1.6e-18 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 241 2.0e-18 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 241 2.0e-18 1
FB|FBgn0052344 - symbol:CG32344 species:7227 "Drosophila ... 246 2.5e-18 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 238 3.2e-18 2
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 238 4.1e-18 2
DICTYBASE|DDB_G0269986 - symbol:DDB_G0269986 species:4468... 177 4.7e-18 2
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 234 1.1e-17 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 235 1.2e-17 1
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 235 1.2e-17 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 233 1.6e-17 2
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 233 1.6e-17 2
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 233 1.6e-17 2
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 233 1.8e-17 2
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 233 1.9e-17 2
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 229 3.7e-17 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 231 4.0e-17 1
UNIPROTKB|F8WDT8 - symbol:DDX56 "Probable ATP-dependent R... 213 4.3e-17 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 230 5.2e-17 2
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-... 232 1.4e-16 1
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 221 1.7e-16 2
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 229 2.0e-16 1
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica... 207 2.1e-16 1
ZFIN|ZDB-GENE-030131-3973 - symbol:ddx31 "DEAD (Asp-Glu-A... 229 2.6e-16 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 226 3.1e-16 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 226 3.1e-16 1
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 224 3.3e-16 1
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 224 3.3e-16 1
UNIPROTKB|G3V6M5 - symbol:Ddx56 "Protein Ddx56" species:1... 224 5.6e-16 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 222 5.7e-16 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 220 7.3e-16 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 220 7.3e-16 1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 219 1.1e-15 1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 219 1.1e-15 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 225 1.1e-15 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 217 1.5e-15 2
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 223 1.6e-15 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 220 1.6e-15 1
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 215 1.7e-15 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 216 2.1e-15 1
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 219 2.2e-15 1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 221 2.5e-15 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 215 2.6e-15 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 215 2.6e-15 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 219 2.8e-15 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 219 2.8e-15 1
UNIPROTKB|E1BGI6 - symbol:DDX54 "Uncharacterized protein"... 221 3.0e-15 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 216 3.4e-15 1
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 220 3.7e-15 1
UNIPROTKB|G3V0G3 - symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) b... 213 3.7e-15 1
UNIPROTKB|Q3SZ40 - symbol:DDX56 "Probable ATP-dependent R... 217 3.7e-15 1
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 219 3.7e-15 1
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 219 4.9e-15 1
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 218 5.0e-15 1
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo... 219 5.1e-15 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 214 5.3e-15 1
RGD|1562539 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box po... 219 5.4e-15 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 214 7.0e-15 1
RGD|1304895 - symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box po... 216 7.6e-15 1
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 213 8.0e-15 1
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 213 8.0e-15 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 212 9.0e-15 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 212 9.0e-15 1
UNIPROTKB|Q9NY93 - symbol:DDX56 "Probable ATP-dependent R... 213 1.1e-14 1
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 211 1.2e-14 1
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 211 1.2e-14 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 215 1.2e-14 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 215 1.2e-14 1
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 212 1.7e-14 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 210 1.7e-14 1
TAIR|locus:2064844 - symbol:AT2G40700 species:3702 "Arabi... 212 1.8e-14 1
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 211 1.9e-14 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 210 2.0e-14 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 209 2.4e-14 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 210 2.4e-14 1
MGI|MGI:1277172 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) bo... 210 2.4e-14 1
UNIPROTKB|F1N5H8 - symbol:DDX31 "Uncharacterized protein"... 212 2.5e-14 1
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 213 2.5e-14 1
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 208 2.7e-14 1
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 208 2.7e-14 1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 194 3.3e-14 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 208 4.2e-14 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 205 4.3e-14 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 208 4.5e-14 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 205 5.3e-14 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 205 5.3e-14 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 207 6.1e-14 1
ASPGD|ASPL0000054300 - symbol:AN0583 species:162425 "Emer... 210 6.1e-14 1
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 208 6.2e-14 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 207 6.9e-14 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 207 7.6e-14 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 207 7.6e-14 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 207 7.6e-14 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 207 7.6e-14 1
TAIR|locus:2077592 - symbol:AT3G06980 species:3702 "Arabi... 208 7.9e-14 1
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 207 8.9e-14 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 207 9.2e-14 1
WARNING: Descriptions of 631 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 125/281 (44%), Positives = 168/281 (59%)
Query: 63 RPLSXXXXXXXXXXQQRVPSKPE--KDSFILENFKLRKLNGSAKTXXXXXXXXXXXXXXX 120
RPL + + P+ K + +LE +LR L SAK
Sbjct: 42 RPLYSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEE- 100
Query: 121 XXXXIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
+S R+KS ++V +FQELGL E++ A++++ + VP+EIQC+GIPAV+ KS
Sbjct: 101 -----SSIRKKSK----KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKS 151
Query: 181 VVLXXXXXXXRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKF 238
VVL +TLAYLLP+VQ++R DEA L KP PR +VLC T E ++Q + +AK
Sbjct: 152 VVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKS 211
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
ISH AR S + +GG + ED N I M++ TP +LQHIE+ N+ DI Y+VLDE
Sbjct: 212 ISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDE 271
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
ADT+FDRGFGPEI K L PL ALK+N QGFQT+LVTA +
Sbjct: 272 ADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATM 312
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 255 (94.8 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 61/181 (33%), Positives = 105/181 (58%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E + +F+EL L ++KAV+K+G P+ IQ IP LNGK ++ +T A+LL
Sbjct: 187 EELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Query: 198 PLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
P+++ +L RD + R ++L T E A Q + + ++ + + S + GG+S+
Sbjct: 247 PVLERLLFRDSEYRAI-----RVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSN 301
Query: 257 KALE-DVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKI 314
KA E ++ +P ++IATP ++ H+ + + + DD+ ++LDEAD L D GF EI+KI
Sbjct: 302 KAQEVELRKSP-DVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKI 360
Query: 315 L 315
+
Sbjct: 361 V 361
Score = 41 (19.5 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 8 EEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKR--TGKSLVNLSKVLYSVKQI 56
+++ + E +E+ E E EK + K+++ ++ + K + KVL S +++
Sbjct: 130 DDEEVNEEEEEEEEEEDNENEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKL 181
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 249 (92.7 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 58/178 (32%), Positives = 96/178 (53%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++ F EL L +++KA+E+ G P+ IQ IP L G+ V+ +T ++ LP+
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ +L R A M PR++VLC T E A Q + + H +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHL-KLTKALLIGGVSFKE 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 116 QDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 249 (92.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 62/216 (28%), Positives = 113/216 (52%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ E+++ + FQ + L ++KA+ K G VP+ IQ IP +L+G +V
Sbjct: 217 QEEETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMART 276
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
+T A+++P++Q L + + RA++L T E A Q F + K S +L +
Sbjct: 277 GSGKTGAFVIPMIQKLGDHSTTVGV-----RAVILSPTRELAIQTFKVVKDFSQGTQLRT 331
Query: 248 SMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+ GG S + D++ P ++IATP ++ H+ + +S ++Y+V DEAD LF+ G
Sbjct: 332 ILIVGGDSMEDQFTDLARNP-DIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMG 390
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342
F ++++IL+ L ++ QT+L +A + L
Sbjct: 391 FNEQLTEILSKLSENR--------QTLLFSATLPSL 418
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 241 (89.9 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 67/231 (29%), Positives = 116/231 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++ +T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L R KP+ RA++L T E A Q F + L +++ +GGVS K
Sbjct: 71 RLFVSRPPLQRSAKPVI-RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +L+ATP +L + ++ + + VLDEAD + D GF P+I +IL L
Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 320 DSA---LKSNGQGFQTILVTAAIAELSSLMECLERDNAG-KVTAMLLEMDQ 366
+S L S + +T + +L+E R+ A ++T ++ +D+
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 240
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 241 (89.9 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 67/231 (29%), Positives = 116/231 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++ +T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L R KP+ RA++L T E A Q F + L +++ +GGVS K
Sbjct: 71 RLFVSRPPLQRSAKPVI-RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +L+ATP +L + ++ + + VLDEAD + D GF P+I +IL L
Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 320 DSA---LKSNGQGFQTILVTAAIAELSSLMECLERDNAG-KVTAMLLEMDQ 366
+S L S + +T + +L+E R+ A ++T ++ +D+
Sbjct: 190 ESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 240
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 246 (91.7 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 74/234 (31%), Positives = 114/234 (48%)
Query: 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
S S FQ +GL E+IK + K G VP+ IQ IP +L G+ VV +T
Sbjct: 31 SKSKKNKSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKT 90
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
+L+PL + L+R E P K RA++L T E A Q + K + L S + G
Sbjct: 91 ACFLIPLFEKLQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLG 145
Query: 253 GVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G S + + P +++ATP L + ++ + I YVV DEAD LF+ GFG ++
Sbjct: 146 GDSMDSQFSAIHTCP-DVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQL 204
Query: 312 SKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD 365
++ L+ L S QT++ +A + +L L+E AG +L+ +D
Sbjct: 205 NETLHRLPSSR--------QTVMFSATLPKL--LVEFAR---AGLNDPVLIRLD 245
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 238 (88.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 55/187 (29%), Positives = 97/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLK 319
I + K
Sbjct: 360 TIFSYFK 366
Score = 44 (20.5 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 238 (88.8 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 55/187 (29%), Positives = 97/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 179 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIG 298
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GVS K + + +++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 299 GVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358
Query: 313 KILNPLK 319
I + K
Sbjct: 359 TIFSYFK 365
Score = 43 (20.2 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 12 IKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
+ L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 84 VSLLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 131
>DICTYBASE|DDB_G0269986 [details] [associations]
symbol:DDB_G0269986 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269986
GO:GO:0005524 EMBL:AAFI02000005 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_646448.1
EnsemblProtists:DDB0190716 GeneID:8617407 KEGG:ddi:DDB_G0269986
InParanoid:Q55CN3 Uniprot:Q55CN3
Length = 796
Score = 177 (67.4 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 42/115 (36%), Positives = 65/115 (56%)
Query: 209 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM--ENGGVSSKALEDVSNAP 266
LL P P+AI+L T E A Q +AK IS + + GG +K L+ N P
Sbjct: 365 LLKRAPRRPKAIILVPTRELAIQVMKVAKKISFEVKFSCTAISSGGGDLNKYLKTFKNLP 424
Query: 267 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD--RGFGPEISKILNPLK 319
I +LI+TP +++ IE + + +R++V+DEAD++F +GF +I KI+ P K
Sbjct: 425 IDILISTPGSLIKLIEQKKIFFSKLRHLVIDEADSMFTIGKGFEQDIDKIVQPFK 479
Score = 118 (46.6 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVL-NGKSVVLXXXXXXXRTLAYLLPL 199
+F LG+K ++++++K + +PS IQ + IP +L N K V+ +TL YLLP+
Sbjct: 226 AFSRLGIKKNLVESLKKHFNITIPSLIQQLAIPPILSNSKDVLFVSQTGTGKTLTYLLPI 285
Query: 200 VQMLRRDE 207
+Q +++ E
Sbjct: 286 IQNIKKSE 293
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 234 (87.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLK 319
I + K
Sbjct: 360 TIFSYFK 366
Score = 44 (20.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 235 (87.8 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 52/177 (29%), Positives = 95/177 (53%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ +T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L D P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLL-D---FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 235 (87.8 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 52/177 (29%), Positives = 95/177 (53%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ +T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L D P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLL-D---FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLK 319
I + K
Sbjct: 360 TIFSYFK 366
Score = 44 (20.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLK 319
I + K
Sbjct: 360 TIFSYFK 366
Score = 44 (20.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLK 319
I + K
Sbjct: 360 TIFSYFK 366
Score = 44 (20.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 233 (87.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 198 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 257
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 258 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 317
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 318 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 377
Query: 313 KILNPLK 319
I + K
Sbjct: 378 TIFSYFK 384
Score = 44 (20.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 96 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 150
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 233 (87.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 207 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 266
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 267 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 326
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 327 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 386
Query: 313 KILNPLK 319
I + K
Sbjct: 387 TIFSYFK 393
Score = 44 (20.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 105 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 159
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 229 (85.7 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 53/187 (28%), Positives = 96/187 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 176 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 235
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ + DS ++ G
Sbjct: 236 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 295
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 296 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 355
Query: 313 KILNPLK 319
I + K
Sbjct: 356 TIFSYFK 362
Score = 45 (20.9 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + I L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 74 PLGPQSNISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 128
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 231 (86.4 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 54/179 (30%), Positives = 97/179 (54%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ F++ L +E++ ++ K+G P+ IQ + IP + GK V+ +T A+L
Sbjct: 9 SELSLMFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFL 68
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LP+ Q L D KP PR ++L T E A Q ++ ++ ++ + + GGV+
Sbjct: 69 LPIAQHLL-DYPRT--KPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNY 125
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ D+ + +L+ATP +L++IE+ +I +VLDEAD + D GF I++I+
Sbjct: 126 GSHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIV 184
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 213 (80.0 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 58/180 (32%), Positives = 96/180 (53%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVSSKALED 261
L +A P+ R +VL T+E A Q M + ++ +CAR D + N VS+ A +
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCAR-DVRVAN--VSA-AEDS 124
Query: 262 VSNAPIGM-----LIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
VS + M ++ TPS +L H++ ++ D + +V+DEAD LF GF E+ +L
Sbjct: 125 VSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 230 (86.0 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 63/193 (32%), Positives = 101/193 (52%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
+SE N E +F+ELG+ E+ +A EK+G P+ IQ IP VLN + V+
Sbjct: 31 SSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA 90
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+T A+ LP++Q L + + P A+VL T E A Q + I +
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPS-----PFF--AVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 246 DSSMENGGVS--SKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTL 302
S + GG+ ++A+ +S P +L+ TP ++ H+E+ + S +++Y+++DEAD L
Sbjct: 144 RSVVIVGGMDMVTQAVA-LSKKP-HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRL 201
Query: 303 FDRGFGPEISKIL 315
D FGP I KIL
Sbjct: 202 LDMDFGPIIDKIL 214
Score = 37 (18.1 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 363 EMDQAEVFDLTESQDALKKKVVEAMDSLH 391
E+D+ VF L+E +++ + M +H
Sbjct: 412 EIDKEGVFLLSERVGEAQREAIIQMKEIH 440
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 232 (86.7 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 66/223 (29%), Positives = 106/223 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
FQ +GL + K + K G VP+ IQ IP +L+GK VV +T A+L+PL +
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+ P RA++L T E A Q K + L +++ GG S
Sbjct: 140 LKA-----PQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAA 194
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ ++I TP ++ I++ N+ + YVV DEAD LF+ GF ++ +I+ L D+
Sbjct: 195 LHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDAR 254
Query: 323 LKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD 365
QT+L +A + +L +E AG +L+ +D
Sbjct: 255 --------QTLLFSATLPKL-----IVEFARAGLTEPVLIRLD 284
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 221 (82.9 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 67/266 (25%), Positives = 130/266 (48%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ ++ + G+ P+ IQ G+P VL G+ ++ +TL ++LP+
Sbjct: 176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV 235
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGF----HMAKFISHCA--RLDSSMENG 252
+ E LP + P +++C + E A Q H +K + C + S + G
Sbjct: 236 IMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMG 295
Query: 253 GVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G+ S+AL+ +S + +++ATP ++ ++ + ++ D RY+ +DEAD + D GF ++
Sbjct: 296 GLPVSEALDVISRG-VHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDV 354
Query: 312 SKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFD 371
I + K GQ QT+L +A + + ++ R K + + A +
Sbjct: 355 RTIFSFFK-------GQR-QTLLFSATMPKK---IQNFARSALVKPVTINVGRAGAASMN 403
Query: 372 LTESQDALKK--KVVEAMDSLHLSAP 395
+T+ + +K+ KVV +D L +AP
Sbjct: 404 VTQQVEYVKQEAKVVYLLDCLQKTAP 429
Score = 49 (22.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 23 EQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQ 55
+ TE +K+ + KK+ K L K++ S+ Q
Sbjct: 86 QHTELKKIAEAKKLSAVEKQLREEEKIMESIAQ 118
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 229 (85.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 58/165 (35%), Positives = 86/165 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL GKS ++ +TLAYL P+VQ
Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 300
Query: 202 MLRRDEA--LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKA 258
LR++E L P +PR +VL T E A Q + + IS S + GG K
Sbjct: 301 NLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKT 360
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + + +LIATP L +++ V +++R VVLDE D L+
Sbjct: 361 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILY 405
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 207 (77.9 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 58/200 (29%), Positives = 94/200 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
FQ +GL + K + K G VP+ IQ IP +L+GK VV +T +LLP+ +
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 74
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+ A RA++L T E A Q K + L +++ GG +
Sbjct: 75 LKTHSA-----QTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAA 129
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ ++IATP ++ + ++ + YVV DEAD LF+ GF ++ +I+ L
Sbjct: 130 LHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG-- 187
Query: 323 LKSNGQGFQTILVTAAIAEL 342
G QT+L +A + +L
Sbjct: 188 ------GHQTVLFSATLPKL 201
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 229 (85.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 69/219 (31%), Positives = 115/219 (52%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPS--EIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++F+EL L ++ + K+ L V S +Q IP +++GK V+ +TLAY +P
Sbjct: 154 NTFEELNLHPHLVATLHKV-LNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIP 212
Query: 199 LVQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHM-AKFISHCARLDSSMENGGVS 255
+VQ L +A+ P + P A+V+ T E A Q F M K + + + GG
Sbjct: 213 MVQFL---QAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEK 269
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
KA + I +LI+TP ++ HI++ +++ +R+++LDEAD + D GF +++ I
Sbjct: 270 KKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVI 329
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERD 352
LN AL + G Q +L++A I E LS L +D
Sbjct: 330 LN-----ALNAAGPDRQNVLLSATITEGLSRLASISMKD 363
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 226 (84.6 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 60/174 (34%), Positives = 85/174 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL A + KAV + G PS IQ IPAVL GK V+ +T + LPL++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + K RA+VL T E A Q + L S++ GGV +
Sbjct: 62 LLAKGHKA---KSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQIN 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L ++ V + + +VLDEAD + D GF +I KIL
Sbjct: 119 KLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKIL 172
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 226 (84.6 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 62/213 (29%), Positives = 104/213 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
++F + GL ++KAV + G +P+ IQ IP +L G V +T A++LP++
Sbjct: 4 TTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI 63
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L A M PR ++LC T E A Q + +L ++ GGVS K E
Sbjct: 64 QRLSTGRARARM----PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQE 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ + +LIATP ++ + + + +++DEAD + D GF P+I KI
Sbjct: 120 TLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKIC----- 174
Query: 321 SALKSNGQGFQTILVTAAI-AELSSLMECLERD 352
+ L +N Q T+L +A ++ L + ++D
Sbjct: 175 AKLPANRQ---TLLFSATFPTDIQRLAKTFQKD 204
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 224 (83.9 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 74/228 (32%), Positives = 121/228 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F ELGL A + KA+ L P+ +Q + IPA+L G+ ++ +T A+ LPL+Q
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 202 MLRRDEALLP----MKPMHPRAIVLCTTEESA---DQGFH-MAKFISHCARLDSSMENGG 253
+L + A+ + P A+VL T E A + H +A +S A L+ + GG
Sbjct: 77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 254 VS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
V+ + L D+S P +++ATP +L ++S D I+++VLDEAD L + GF P++
Sbjct: 137 VALEQQLADLSAKP-QLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTA 359
K++ A+ + QT+L +A + E L SL L ++ KV A
Sbjct: 196 KLM------AMMPKRK--QTLLFSATLPEALDSLAGKLLTNDPLKVEA 235
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 224 (83.9 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 74/228 (32%), Positives = 121/228 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F ELGL A + KA+ L P+ +Q + IPA+L G+ ++ +T A+ LPL+Q
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 202 MLRRDEALLP----MKPMHPRAIVLCTTEESA---DQGFH-MAKFISHCARLDSSMENGG 253
+L + A+ + P A+VL T E A + H +A +S A L+ + GG
Sbjct: 77 ILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 254 VS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
V+ + L D+S P +++ATP +L ++S D I+++VLDEAD L + GF P++
Sbjct: 137 VALEQQLADLSAKP-QLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQ 195
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTA 359
K++ A+ + QT+L +A + E L SL L ++ KV A
Sbjct: 196 KLM------AMMPKRK--QTLLFSATLPEALDSLAGKLLTNDPLKVEA 235
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 224 (83.9 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 56/177 (31%), Positives = 93/177 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI-SHCARLDSSMENGGVS--SKAL 259
L +A P+ R +VL T+E A Q M + + S+CAR D + N + S +
Sbjct: 69 LLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCAR-DVRVANVSAAEDSASQ 127
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
V +++ TPS +L H++ +N+ D + +V+DEAD LF GF E+ +L
Sbjct: 128 RAVLMEKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLL 184
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 222 (83.2 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 57/176 (32%), Positives = 91/176 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V++F EL L +++A++ G P+ IQ IP L+G+ V+ +T AYLLP
Sbjct: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L D P K P R ++L T E A Q A+ ++ LD + GGV+
Sbjct: 63 LQHLL-D---FPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 220 (82.5 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 58/177 (32%), Positives = 92/177 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L +++ + ++G P+ IQ IPA+L + V+ +T A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 MLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS--SMENGGVSSKA 258
+L D ++ K + RA+VL T E A Q F+ + D + GGVS +A
Sbjct: 62 LLMADNQSDHAAKAI--RALVLVPTRELALQV--QQSFVKYAKGTDIRVGIAYGGVSIEA 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ V NA I +LIATP +L H+ ++ + + +V DEAD + D GF EI +L
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVL 174
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 220 (82.5 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 58/177 (32%), Positives = 92/177 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L +++ + ++G P+ IQ IPA+L + V+ +T A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 MLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS--SMENGGVSSKA 258
+L D ++ K + RA+VL T E A Q F+ + D + GGVS +A
Sbjct: 62 LLMADNQSDHAAKAI--RALVLVPTRELALQV--QQSFVKYAKGTDIRVGIAYGGVSIEA 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ V NA I +LIATP +L H+ ++ + + +V DEAD + D GF EI +L
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVL 174
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 219 (82.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 54/182 (29%), Positives = 87/182 (47%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ +T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LPL+Q RA+VL T E A Q + + L GG S
Sbjct: 62 LPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSM 121
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
K + + +LIATP +L H +++ + +VLDEAD + D GF P++ ++L
Sbjct: 122 KVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 317 PL 318
L
Sbjct: 182 RL 183
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 219 (82.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 54/182 (29%), Positives = 87/182 (47%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ +T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LPL+Q RA+VL T E A Q + + L GG S
Sbjct: 62 LPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSM 121
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
K + + +LIATP +L H +++ + +VLDEAD + D GF P++ ++L
Sbjct: 122 KVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 317 PL 318
L
Sbjct: 182 RL 183
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 225 (84.3 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 58/184 (31%), Positives = 97/184 (52%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V SF+E L A +I+ +++ G P+ IQ G P L+G+ +V +TLAY+LP
Sbjct: 236 VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPA 295
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSK 257
+ + ++ + P A+VL T E A Q + + H + + + GG SSK
Sbjct: 296 IVHIGNQPPII--RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGG-SSK 352
Query: 258 ALE--DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ D+ + ++IATP ++ +E+RN + Y+VLDEAD + D GF P+I KI+
Sbjct: 353 VPQARDLDRG-VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 411
Query: 316 NPLK 319
++
Sbjct: 412 EQIR 415
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 217 (81.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 53/193 (27%), Positives = 99/193 (51%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E +K ++ +F+ L L K++++MG ++IQ IP ++ G+ V+
Sbjct: 141 EEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAART 200
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAI-VLCTTEESADQGFHMAKFISHCARLD 246
+TLA+L+P V++L R + P + + V+C T E A Q + +AK +
Sbjct: 201 GSGKTLAFLIPAVELLYR----VKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQT 256
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDR 305
GG K ++ + +L+ATP +L H+E+ N +++++V+DEAD + ++
Sbjct: 257 VGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQ 316
Query: 306 GFGPEISKILNPL 318
F ++ KILN L
Sbjct: 317 NFEEDLKKILNLL 329
Score = 45 (20.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 2 LLSPSTEEQFIKYLEG-AKEQTEQTEAE-KLRKRKKMKRTG 40
L P+ EE+ + +G AKE + E K +K+KK K+ G
Sbjct: 32 LKQPAMEEE-PDHEDGDAKENNALIDEEPKKKKKKKNKKRG 71
Score = 37 (18.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 16 EGAKEQTEQTEAEKLRKR-KKMKRTG 40
+G E + E +K +K+ KK+++ G
Sbjct: 75 DGEDEAVAEEEPKKKKKKNKKLQQRG 100
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 223 (83.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 72/240 (30%), Positives = 110/240 (45%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A ++K SG FQ +GL + K V K G VP+ IQ IP +L G+ VV
Sbjct: 28 AQNKKKKSGG-------FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMA 80
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+T +LLP+ + L+ P P RA++L T E A Q K + L
Sbjct: 81 RTGSGKTACFLLPMFERLKA-----P-SPSGARALILSPTRELALQTLKFTKELGKFTGL 134
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
+++ GG + + ++IATP ++ + N+ + YVV DEAD LF+
Sbjct: 135 KTALVLGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEM 194
Query: 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD 365
GF ++ +IL L S QT+L +A + +L L+E AG ML+ +D
Sbjct: 195 GFAEQLQEILARLPGS--------HQTVLFSATLPKL--LVEFAR---AGLTEPMLIRLD 241
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 220 (82.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 57/182 (31%), Positives = 94/182 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E G ++ V+ G P+ IQC G P L+G+ +V +TL+Y LP
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSK 257
+ + L P P +VL T E A Q +KF H +R+ ++ GGV S+
Sbjct: 172 IVHINAQPLLAPGDG--PIVLVLAPTRELAVQIQTECSKF-GHSSRIRNTCVYGGVPKSQ 228
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ D+S ++IATP ++ +E + + Y+VLDEAD + D GF P+I KI++
Sbjct: 229 QIRDLSRGS-EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 287
Query: 318 LK 319
++
Sbjct: 288 IR 289
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 215 (80.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 69/251 (27%), Positives = 119/251 (47%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A++ KS + +SFQ + L +++ + +G P+ IQ IP L GK VV
Sbjct: 242 AADEPKSDTNKGN--ASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGA 299
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCAR 244
+T A+++P+++ L P K R ++L T E A Q +A K SH
Sbjct: 300 VTGSGKTAAFVVPILERL----LYRPKKVPTSRVVILAPTRELAIQCHAVATKLASH-TD 354
Query: 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLF 303
+ + GG+S K E ++IATP + H+ + + + D + +VLDEAD +
Sbjct: 355 IKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRML 414
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLE 363
+ GF E+++IL L S QT+L +A ++S ++ L R K ++++
Sbjct: 415 EDGFADELNEILTTLPKSR--------QTMLFSAT---MTSSVDNLIRVGLNKPVRLMVD 463
Query: 364 MDQAEVFDLTE 374
+ V LT+
Sbjct: 464 SQKKTVVTLTQ 474
Score = 50 (22.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 3 LSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLVN 45
+S + ++F++ E +E+ + K +KK KR+ K N
Sbjct: 18 ISDNEADEFVEEEEVIQEEAPPKKKSKTIPKKKQKRSSKKASN 60
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 216 (81.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 68/240 (28%), Positives = 114/240 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+S F+ L +I V G P+ IQ IPA++NG ++ +T A+ LP+
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ R++ + +K R+++L T E A Q S L + + GGV +A
Sbjct: 61 INKFGRNK--IDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
D + +L+ATP +L IE +++ + VLDEADT+ D GF ++ I++ L
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178
Query: 320 DSALKSNGQGFQTILVTAAI-AELSSLMECLERDNAG-KVTAMLLEMD--QAEVFDLTES 375
S QT+L +A + AE+ L E + D ++TA + +D V+ L +S
Sbjct: 179 KSR--------QTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKS 230
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 219 (82.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 49/187 (26%), Positives = 100/187 (53%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F ++ + +++ ++ G+ P+ IQ G+P VL+G+ ++ +TL ++LP+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAK-FISHCA-----RLDSSMENG 252
+ + ++E ++P+ P A+V+C + E A Q + + + F++ RL S + G
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV ++ DV + +++ATP + + + +S D R + LDEAD L D GF +I
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 313 KILNPLK 319
+ + K
Sbjct: 276 HVFDHFK 282
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 221 (82.9 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 67/239 (28%), Positives = 117/239 (48%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E ++SF ++ L +++A+ +G P+ IQ IP L G+ + +T AY+L
Sbjct: 154 EQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 P-LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
P L ++L R L K + R +VL T E Q + + K + +D + GG+
Sbjct: 214 PTLERLLYRP---LNNKAI-TRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDV 269
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
KA E V ++IATP ++ HI++ + + D I ++LDEAD + D F ++ +I+
Sbjct: 270 KAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEII 329
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTE 374
N S K+ QT+L +A ++E + + D KV + +Q F+L +
Sbjct: 330 N----SCCKTR----QTMLFSATMSEQVKDLAAVSLDKPIKV---FVNNNQQVAFNLRQ 377
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 215 (80.7 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 53/177 (29%), Positives = 90/177 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF +LGL +++ V ++G P+ IQ IP +L G+ ++ +T +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
LR+ + + RA++L T E A Q + L S GGV +A +
Sbjct: 62 KLRQGQT---QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP ++ R V ++I VVLDEAD + D GF I+KI++ L
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCL 175
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 215 (80.7 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 53/177 (29%), Positives = 90/177 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF +LGL +++ V ++G P+ IQ IP +L G+ ++ +T +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
LR+ + + RA++L T E A Q + L S GGV +A +
Sbjct: 62 KLRQGQT---QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP ++ R V ++I VVLDEAD + D GF I+KI++ L
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCL 175
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 219 (82.2 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 59/194 (30%), Positives = 98/194 (50%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
IA E+SS +SFQ L L ++K + ++ P+ IQ IP L GK +V
Sbjct: 116 IADFYEESSPQQTH--TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAG 173
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+T AY++P++ E LL + I+L T E A Q + K +SH
Sbjct: 174 AQTGSGKTGAYMIPII------ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVN 227
Query: 245 -LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTL 302
L+ + GG++ + E+ ++IATP ++ HI + + S DI+ +V+DEAD +
Sbjct: 228 NLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRM 287
Query: 303 FDRGFGPEISKILN 316
+ GF E+++IL+
Sbjct: 288 LEEGFQDELTEILS 301
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 219 (82.2 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 59/194 (30%), Positives = 98/194 (50%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
IA E+SS +SFQ L L ++K + ++ P+ IQ IP L GK +V
Sbjct: 116 IADFYEESSPQQTH--TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAG 173
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+T AY++P++ E LL + I+L T E A Q + K +SH
Sbjct: 174 AQTGSGKTGAYMIPII------ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVN 227
Query: 245 -LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTL 302
L+ + GG++ + E+ ++IATP ++ HI + + S DI+ +V+DEAD +
Sbjct: 228 NLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRM 287
Query: 303 FDRGFGPEISKILN 316
+ GF E+++IL+
Sbjct: 288 LEEGFQDELTEILS 301
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 221 (82.9 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 73/267 (27%), Positives = 123/267 (46%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 82 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMAR 141
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T +L+P+ + L+ A RA++L T E A Q K + L
Sbjct: 142 TGSGKTACFLIPMFERLKTHSA-----QTGARALILSPTRELALQTMKFTKELGKFTGLK 196
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+++ GG + + ++IATP ++ + N+ + YVV DEAD LF+ G
Sbjct: 197 TALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMG 256
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD- 365
F ++ +I+ L G QT+L +A + +L L+E AG +L+ +D
Sbjct: 257 FAEQLQEIIGRLPG--------GHQTVLFSATLPKL--LVEFAR---AGLTEPVLIRLDV 303
Query: 366 QAEVFDLTESQDALKKKVVEAMDSLHL 392
+++ + ++ L ++ +A LHL
Sbjct: 304 DSKLNEQLKTSFFLVREDAKAAVLLHL 330
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 216 (81.1 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 66/234 (28%), Positives = 103/234 (44%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
++ + F +LGL ++KAV G PS IQ IPAV++G+ V+ +T +
Sbjct: 2 SDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFT 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LPL+Q L + + + RA++L T E A Q + L S + GGV
Sbjct: 62 LPLLQRLSSSKGN-KVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKI 120
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +L+ATP +L R V + +LDEAD + D GF +I K++
Sbjct: 121 NPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMT 180
Query: 317 PL-KDSALKSNGQGFQTILVTAAIAELSSLMEC---LERDNAGKVTAMLLEMDQ 366
L KD F + A +++ +E E A KVT L +D+
Sbjct: 181 ALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDK 234
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 220 (82.5 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 60/197 (30%), Positives = 100/197 (50%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
++ R K N + S+FQ +GL +++A+ K G P+ IQ IP +L G+ VV
Sbjct: 55 SNRRTKGKKGNGKA-SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA 113
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+T A+++P+++ L+ A + RA++L E A Q + K S L
Sbjct: 114 RTGSGKTAAFVIPMIEHLKSTLA-----NSNTRALILSPNRELALQTVKVVKDFSKGTDL 168
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFD 304
S GGVS + + + +++ATP L H++ + + I YVV DEAD LF+
Sbjct: 169 RSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFE 227
Query: 305 RGFGPEISKILNPLKDS 321
GF ++++IL+ L S
Sbjct: 228 MGFAAQLTEILHALPTS 244
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 213 (80.0 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 58/180 (32%), Positives = 96/180 (53%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVSSKALED 261
L +A P+ R +VL T+E A Q M + ++ +CAR D + N VS+ A +
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCAR-DVRVAN--VSA-AEDS 124
Query: 262 VSNAPIGM-----LIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
VS + M ++ TPS +L H++ ++ D + +V+DEAD LF GF E+ +L
Sbjct: 125 VSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 56/177 (31%), Positives = 93/177 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVS--SKAL 259
L +A P+ RA+VL T+E A Q M + ++ +CAR D + N + S +
Sbjct: 69 LLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCAR-DIRVANVSAAEDSASQ 127
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
V +++ TPS +L H++ N+ D + +V+DEAD LF GF E+ +L
Sbjct: 128 RAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLL 184
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 219 (82.2 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 60/204 (29%), Positives = 105/204 (51%)
Query: 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++F ELGL +I + + + + +Q IP +L G+ ++ +TLAY +P+
Sbjct: 101 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 160
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA 258
VQ L+ E+ + + P A+VL T E A Q F + K + + + GG K+
Sbjct: 161 VQSLQAMESKI-QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 219
Query: 259 LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ I +LI+TP ++ HI+ +N+ +R++V DEAD + D GF +I+ ILN
Sbjct: 220 EKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN- 278
Query: 318 LKDSALKSNGQGFQTILVTAAIAE 341
A+ + Q Q +L++A + E
Sbjct: 279 ----AVNAECQKRQNVLLSATLTE 298
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 219 (82.2 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 60/204 (29%), Positives = 105/204 (51%)
Query: 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++F ELGL +I + + + + +Q IP +L G+ ++ +TLAY +P+
Sbjct: 230 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 289
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA 258
VQ L+ E+ + + P A+VL T E A Q F + K + + + GG K+
Sbjct: 290 VQSLQAMESKI-QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 348
Query: 259 LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ I +LI+TP ++ HI+ +N+ +R++V DEAD + D GF +I+ ILN
Sbjct: 349 EKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN- 407
Query: 318 LKDSALKSNGQGFQTILVTAAIAE 341
A+ + Q Q +L++A + E
Sbjct: 408 ----AVNAECQKRQNVLLSATLTE 427
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 218 (81.8 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 60/193 (31%), Positives = 96/193 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
S++E L +E++KAVE+ G PS IQ IP L + V+ +T A++LP++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 202 MLRRDEALLPMKPMH----PRAIVLCTTEESADQ-GFHMAKFISHCA-RLDSSMENGGVS 255
+ R L PM + P A+V+ T E A Q KF + R+ S + +
Sbjct: 374 YISR---LPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE 430
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ L+ I +IATP ++ +E R + YVVLDEAD + D GF P+++ +L
Sbjct: 431 EQGLKITQGCEI--VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVL 488
Query: 316 NPLKDSALKSNGQ 328
+ + S LK +
Sbjct: 489 DAMPSSNLKPENE 501
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 219 (82.2 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 69/239 (28%), Positives = 109/239 (45%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 81 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 140
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T +LLP+ + L+ A RA++L T E A Q K + L
Sbjct: 141 TGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKFTKELGKFTGLK 195
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+++ GG + + ++IATP ++ + N+ + YVV DEAD LF+ G
Sbjct: 196 TALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMG 255
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD 365
F ++ +I+ L G QT+L +A + +L L+E AG +L+ +D
Sbjct: 256 FAEQLQEIIGRLPG--------GHQTVLFSATLPKL--LVEFAR---AGLTEPVLIRLD 301
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 214 (80.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 58/179 (32%), Positives = 91/179 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL ++++AV + G P+ IQ IPAVL G+ ++ +T + LPL+Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 -MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
++ R +P+ RA++L T E A Q + S + S + GGVS
Sbjct: 62 HLITRQPHAKGRRPV--RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L +E +N V D + +VLDEAD + D GF +I ++L L
Sbjct: 120 MKLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL 177
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 219 (82.2 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 69/239 (28%), Positives = 109/239 (45%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 81 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 140
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T +LLP+ + L+ A RA++L T E A Q K + L
Sbjct: 141 TGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKFTKELGKFTGLK 195
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+++ GG + + ++IATP ++ + N+ + YVV DEAD LF+ G
Sbjct: 196 TALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMG 255
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD 365
F ++ +I+ L G QT+L +A + +L L+E AG +L+ +D
Sbjct: 256 FAEQLQEIIGRLPG--------GHQTVLFSATLPKL--LVEFAR---AGLTEPVLIRLD 301
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 214 (80.4 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 55/194 (28%), Positives = 98/194 (50%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
G V F+EL L +KA+EKMG + +Q IP +L G+ V+ +TL
Sbjct: 35 GEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTL 94
Query: 194 AYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENG 252
A+L+P +++L L KP + I++ T T E A Q F +A+ + + G
Sbjct: 95 AFLIPAIELLHS----LKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIG 150
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + + + + MLIATP +L H+++ + +++ +++DEAD + + GF E+
Sbjct: 151 GANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEM 210
Query: 312 SKILNPLKDSALKS 325
+I+ L + +S
Sbjct: 211 RQIIKILPNEDRQS 224
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 216 (81.1 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 66/258 (25%), Positives = 126/258 (48%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+FQEL L +I + + + + +Q IP +L G+ ++ +TLAY +P+V
Sbjct: 104 AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 163
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKAL 259
Q L+ + + + P A+VL T E A Q F + K + + + GG K+
Sbjct: 164 QSLQALTSKI-QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSE 222
Query: 260 EDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ I +LI+TP ++ HI+ +N+ + +R++V+DEAD + D GF +++ ILN
Sbjct: 223 KARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVILN-- 280
Query: 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQ-D 377
A+ + Q Q +L++A + E + + + N ++ + DQ ++ Q D
Sbjct: 281 ---AVNAECQKRQNVLLSATLTEGVTRLADISLHNPVSISVLDKSWDQPNPKEVASIQLD 337
Query: 378 ALKKKVVEAMDSLHLSAP 395
+ + E++D + P
Sbjct: 338 SFA--IPESLDQYVVLVP 353
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 213 (80.0 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 56/182 (30%), Positives = 95/182 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F +LGL + ++KAV ++G P+ IQ IP++L GK+V+ +T +++LPL
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPL--- 59
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESA---DQGFHM-AKFISHCARLDSSMENGGVSSKA 258
L R ++P R+I+L T E A +Q + AK++ L + GGV +
Sbjct: 60 LHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLP----LTAMAMYGGVDAAP 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L R + D++ +VLDEAD + D GF +I+ I+ L
Sbjct: 116 QKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKL 175
Query: 319 KD 320
+
Sbjct: 176 PE 177
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 213 (80.0 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 56/182 (30%), Positives = 95/182 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F +LGL + ++KAV ++G P+ IQ IP++L GK+V+ +T +++LPL
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPL--- 59
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESA---DQGFHM-AKFISHCARLDSSMENGGVSSKA 258
L R ++P R+I+L T E A +Q + AK++ L + GGV +
Sbjct: 60 LHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLP----LTAMAMYGGVDAAP 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L R + D++ +VLDEAD + D GF +I+ I+ L
Sbjct: 116 QKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKL 175
Query: 319 KD 320
+
Sbjct: 176 PE 177
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 212 (79.7 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 57/178 (32%), Positives = 84/178 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F LGL A ++KA+E+ G PS IQ IPAVL GK V+ +T + LP++++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + + + RA++L T E A Q L S++ GGV
Sbjct: 63 LAKGPKV---RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+L+ATP ++ V D + +VLDEAD + D GF +I KIL L +
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 212 (79.7 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 57/178 (32%), Positives = 84/178 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F LGL A ++KA+E+ G PS IQ IPAVL GK V+ +T + LP++++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + + + RA++L T E A Q L S++ GGV
Sbjct: 63 LAKGPKV---RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+L+ATP ++ V D + +VLDEAD + D GF +I KIL L +
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 58/180 (32%), Positives = 96/180 (53%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVSSKALED 261
L +A P+ R +VL T+E A Q M + ++ +CAR D + N VS+ A +
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCAR-DVRVAN--VSA-AEDS 124
Query: 262 VSNAPIGM-----LIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
VS + M ++ TPS +L H++ ++ D + +V+DEAD LF GF E+ +L
Sbjct: 125 VSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLL 184
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 211 (79.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 61/234 (26%), Positives = 108/234 (46%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + GL + ++ +E MG P++IQ IPA + G ++ +TLA+++P +Q
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L ++ AL PR ++L T E A Q F + + + + + GG + V
Sbjct: 63 LSKNRAL---SKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKV 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
++ATP + H+ + + + ++LDEAD + D GF E+++I N D
Sbjct: 120 LQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-NKAADHR 178
Query: 323 LKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLE-MDQAEVFDLTES 375
K F L A + E ++ E L + + A E +D A+ F L ++
Sbjct: 179 -KRQTLLFSATLDHAQVNEFAT--ELLTKPKRIAINAGHSEHVDIAKRFYLADN 229
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 211 (79.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 61/234 (26%), Positives = 108/234 (46%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + GL + ++ +E MG P++IQ IPA + G ++ +TLA+++P +Q
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L ++ AL PR ++L T E A Q F + + + + + GG + V
Sbjct: 63 LSKNRAL---SKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKV 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
++ATP + H+ + + + ++LDEAD + D GF E+++I N D
Sbjct: 120 LQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI-NKAADHR 178
Query: 323 LKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLE-MDQAEVFDLTES 375
K F L A + E ++ E L + + A E +D A+ F L ++
Sbjct: 179 -KRQTLLFSATLDHAQVNEFAT--ELLTKPKRIAINAGHSEHVDIAKRFYLADN 229
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 72/251 (28%), Positives = 122/251 (48%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
++EKS + SSFQ + L ++K + +G VP++IQ IP L GK +V
Sbjct: 248 DKEKSMMTTTH--SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVT 305
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
+T A+++P+++ L P K R ++LC T E A Q +A I+ +
Sbjct: 306 GSGKTAAFIVPILERL----LYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMV 361
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRG 306
+ GG+S K E ++IATP + H+ + + + ++I +V+DEAD + + G
Sbjct: 362 CLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDG 421
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMEC-LER------DNAGKVT 358
F E+++I+ + KS QT+L +A + + + L+ L R DN K T
Sbjct: 422 FADELNEIIQ----ACPKSR----QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK-KTT 472
Query: 359 AMLLEMDQAEV 369
A LL + V
Sbjct: 473 AKLLTQEFVRV 483
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 51/180 (28%), Positives = 93/180 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F++ G ++++ A++K P+ IQC +P VL+G+ V+ +T A++LP+
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ + D+ L + P ++ T E A Q F AK S L S GG+S
Sbjct: 287 IVHIM-DQPEL-QRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQ 344
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
A +++ATP ++ ++ + ++ Y+VLDEAD +FD GF P++ I+ ++
Sbjct: 345 FKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR 404
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 212 (79.7 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 57/265 (21%), Positives = 130/265 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F+++ ++ +++ G+ P+ IQ G+P +L G+ ++ +TL ++LP+
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAK-FISHCAR-----LDSSMENG 252
+ + ++E ++P+ P +++C + E A Q + + + F++ L S + G
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+ ++ +V + +++ATP + + + +S D RY+ LDEAD L D GF +I
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDL 372
++ + K QT+L +A + + ++ R K + + A D+
Sbjct: 325 EVFDHFKSQR--------QTLLFSAT---MPTKIQIFARSALVKPVTVNVGRAGAANLDV 373
Query: 373 TESQDALKK--KVVEAMDSLHLSAP 395
+ + +K+ K+V ++ L ++P
Sbjct: 374 IQEVEYVKQEAKIVYLLECLQKTSP 398
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 210 (79.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 57/194 (29%), Positives = 93/194 (47%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A + ++SG SF+ELG+ ++ +A E MG P+ IQ IP L G+ V+
Sbjct: 31 AKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLA 90
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+T A+ LP++Q L EA P +VL T E A Q + + +
Sbjct: 91 ETGSGKTAAFALPMLQALM--EA-----PQTLFGLVLAPTRELAYQISQAFETLGSTIGV 143
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFD 304
++ GG+ A +++ATP +L H+E+ + S +++Y+ +DEAD L D
Sbjct: 144 RCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLD 203
Query: 305 RGFGPEISKILNPL 318
FG + KI+ L
Sbjct: 204 MDFGESLDKIIRIL 217
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 212 (79.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 70/254 (27%), Positives = 119/254 (46%)
Query: 142 SFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SF LGL ++ + E+MG P+ +Q IP +L+G+ V++ +T+AYL PL+
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 201 QMLRRDEALLPMKPMHPR-AIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA 258
L+ + H A+V+ T E Q + + K + + GG KA
Sbjct: 90 HHLQGHSPKVDRS--HGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG-EKKA 146
Query: 259 LEDVS-NAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
E I +LIATP +L H+++ + ++R+V+ DEAD++ + G+G EI +I+
Sbjct: 147 KEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIK 206
Query: 317 PLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEV-FDLTES 375
L N QG + +V I + + L+ D + + L+ D + D T+
Sbjct: 207 LLGSG---QNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLD-DPVMIGLDNTKL 262
Query: 376 QDALKKKVVEAMDS 389
Q L + A DS
Sbjct: 263 QQNLSIESPAAPDS 276
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 51/188 (27%), Positives = 98/188 (52%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E G++A +F L E+++ +++ + P+ +Q IP +L G++++
Sbjct: 141 EGDDGASASK-KTFHCFNLCPELVETLQRQNIIHPTTVQLQTIPKILKGRNILCAAETGS 199
Query: 190 XRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
+TL YLLP++ L+ D LL RA+V+ + E A+Q +A+ +S L +
Sbjct: 200 GKTLTYLLPIIHRLQED--LLAGSERSIRAVVIVPSRELAEQVNSVARSVSERFGLVVKV 257
Query: 250 ENGGVSSKALEDV-SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L++TP +L+ + R +S ++ ++V+DEADT+FD F
Sbjct: 258 VGGGRGVGTIKAAFARGQPDILVSTPGALLKALWKRFISLSELYFLVIDEADTMFDDSFA 317
Query: 309 PEISKILN 316
+ KIL+
Sbjct: 318 GMLEKILS 325
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 210 (79.0 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 54/181 (29%), Positives = 86/181 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F + ++ A+ P+ IQC G P L+G+ +V +TLAYLLP
Sbjct: 89 VFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA 148
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKA 258
+ + L + P +VL T E A Q +A C+RL S+ GG
Sbjct: 149 IVHINHQPYL--ERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ 206
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 207 IRDLERG-VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 265
Query: 319 K 319
+
Sbjct: 266 R 266
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 209 (78.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 52/181 (28%), Positives = 91/181 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V SF+++G +++ V+K G P+ IQ G P + G+ ++ +TL+YLLP
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKA 258
+ + L P +VL T E A Q A +++ ++ GGV
Sbjct: 158 IVHVNAQPMLAHGDG--PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQ 215
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ + ++IATP ++ +E N + + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 216 VRDLQKG-VEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHI 274
Query: 319 K 319
+
Sbjct: 275 R 275
Score = 39 (18.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 LSPSTEEQFIKYLEG-AKEQTEQTEAEKLRKRKKMKRTGKSL 43
L+P E+ F Y+E A TE E+ RK +++ GK +
Sbjct: 56 LTPF-EKNF--YVESPAVAAMTDTEVEEYRKLREITVEGKDI 94
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 81/303 (26%), Positives = 131/303 (43%)
Query: 28 EKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRPLSXXXXXXXXXXQQRVPSKPEKD 87
EKL KR+K K G + K LY+ + IN+ +I +++V S D
Sbjct: 11 EKL-KREKKKIFGV-ITPFQKYLYTPRIINTVHLI------IMSSKGITKKKVKSLKNLD 62
Query: 88 --SFILENFKLRKLNGSAKTXXXXXXXXXXXXXXXXXXXIASEREKSS----GSNAEV-V 140
+ E K + L K +S SS +AE+
Sbjct: 63 YTKKLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKF 122
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+F+EL L ++++++E M P+ IQ IP L GK ++ +T A+ +P++
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-AL 259
Q L + +P A+VL T E Q + L SS GG+
Sbjct: 183 QSLWHAQ-----QPYF--ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQA 235
Query: 260 EDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILN-- 316
D+ P +++ATP ++ H+E + S +++Y+V+DEAD L D FGP + KIL
Sbjct: 236 RDLMRKP-HVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVI 294
Query: 317 PLK 319
P+K
Sbjct: 295 PIK 297
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 210 (79.0 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 55/177 (31%), Positives = 90/177 (50%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS 68
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVS--SKAL 259
L +A P+ R +VL T+E A Q M + ++ +CAR D + N + S +
Sbjct: 69 LLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCAR-DVRVANVSAAEDSASQ 127
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
V +++ TPS VL H++ + D + +V+DEAD LF GF E+ +L
Sbjct: 128 RAVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLL 184
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 212 (79.7 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 68/253 (26%), Positives = 125/253 (49%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+FQ L L +I + + + + +Q IP +L G+ ++ +TLAY +P+V
Sbjct: 133 AFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 192
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKAL 259
Q L+ ++ + + P A++L T E A Q F + K + + + GG K+
Sbjct: 193 QSLQAMQSKI-QRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSE 251
Query: 260 EDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ I +LI+TP ++ HI+ +N+ IR+++LDEAD + D GF +++ ILN
Sbjct: 252 KARLRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILN-- 309
Query: 319 KDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQD 377
A+ + Q Q +L++A + E ++ L + D V+ +L D++ ES+
Sbjct: 310 ---AVNAECQERQNVLLSATLTEGVARLADISLHD---PVSISVL--DESHDVSSPESEA 361
Query: 378 ALKKKVVEAMDSL 390
L+ +A D L
Sbjct: 362 FLEASPPQATDEL 374
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 56/181 (30%), Positives = 95/181 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV +T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 L-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALE 260
L RRD + RA+++ T E A Q F + K + L + GG +
Sbjct: 86 LKRRDTTGI-------RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFS 138
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ P +L+ATP +L I + ++ ++YVV DEAD LF+ GF ++++ L + +
Sbjct: 139 TIHENP-DILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPE 197
Query: 321 S 321
S
Sbjct: 198 S 198
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 208 (78.3 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 52/205 (25%), Positives = 100/205 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + L ++++++ MG+ P+ IQ +P L GK ++ +TLA+LLP +Q
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ AL PR ++L T E A Q + + + + + GG + + +
Sbjct: 63 VISTRAL---SKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++ATP + H+E +N+ + + ++LDEAD + D GF P++ K +N D
Sbjct: 120 LAKEP-HFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAADH 177
Query: 322 ALKSNGQGFQTILVTAAIAELSSLM 346
+ F L + I E+++ +
Sbjct: 178 KRRQTLM-FSATLDHSEINEIAAAL 201
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 208 (78.3 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 52/205 (25%), Positives = 100/205 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + L ++++++ MG+ P+ IQ +P L GK ++ +TLA+LLP +Q
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ AL PR ++L T E A Q + + + + + GG + + +
Sbjct: 63 VISTRAL---SKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++ATP + H+E +N+ + + ++LDEAD + D GF P++ K +N D
Sbjct: 120 LAKEP-HFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAADH 177
Query: 322 ALKSNGQGFQTILVTAAIAELSSLM 346
+ F L + I E+++ +
Sbjct: 178 KRRQTLM-FSATLDHSEINEIAAAL 201
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 194 (73.4 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 57/213 (26%), Positives = 106/213 (49%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXX 190
KS ++ V SF+++ L +++KA G P+ IQ IP L GK +
Sbjct: 140 KSLDTSVNV--SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTG 197
Query: 191 RTLAYLLPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
+T A++LP+++ M+ R P R +VL T E A Q F + + +S +L+ +
Sbjct: 198 KTAAFVLPILERMIYR-----PKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCL 252
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFG 308
GG+ KA E + +++ATP ++ H+ + + + +I +VLDEAD + + F
Sbjct: 253 CAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFR 312
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
++++++ + Q QT+L +A + E
Sbjct: 313 DQMNELI--------RLCAQNRQTLLFSATMTE 337
Score = 61 (26.5 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 9 EQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLV 44
E KYL K+QT + EK+ + +K+K TGK+++
Sbjct: 50 EDLQKYL---KKQTPTSLDEKIAEMRKLKNTGKAVI 82
Score = 41 (19.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 16 EGAKEQTEQTEAEKLRKRKKM 36
E EQ Q EA +RK+KKM
Sbjct: 5 ESDDEQV-QDEAVTVRKKKKM 24
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 208 (78.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
GS+ + V +F E G ++ V+ G P+ IQ G P L+G+ VV +T
Sbjct: 117 GSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT 176
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMEN 251
L Y LP + + L P P ++L T E A Q ++KF +R+ ++
Sbjct: 177 LTYCLPAIVHINAQPLLAPGDG--PIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVY 233
Query: 252 GGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV + D+S + + IATP ++ +E + + Y+VLDEAD + D GF P+
Sbjct: 234 GGVPKGPQIRDLSRG-VEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQ 292
Query: 311 ISKILNPLK 319
I KI+ ++
Sbjct: 293 IRKIIGQIR 301
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 205 (77.2 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 59/184 (32%), Positives = 94/184 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L ++ A+ +G P+ IQ IP VL GK ++ +T +++LPL++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LD-SSMEN-GGVSS 256
L E ++ RA++L T E A Q + IS A+ LD SSM GGV +
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQ---VEASISQYAKYLDISSMAMYGGVDA 118
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + +L+ATP +L R + D++ +VLDEAD + D GF +I+KI+
Sbjct: 119 QEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIE 178
Query: 317 PLKD 320
L +
Sbjct: 179 RLPE 182
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 208 (78.3 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 55/182 (30%), Positives = 90/182 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F E G ++ V+ G P+ IQ G P L+G+ VV +TL+Y LP
Sbjct: 139 VETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 198
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSK 257
+ + L P P ++L T E A Q ++KF +R+ ++ GGV
Sbjct: 199 IVHINAQPLLAPGDG--PIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVYGGVPKGP 255
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ D+S + + IATP ++ +E + + Y+VLDEAD + D GF P+I KI++
Sbjct: 256 QIRDLSRG-VEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQ 314
Query: 318 LK 319
++
Sbjct: 315 IR 316
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 205 (77.2 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 59/209 (28%), Positives = 106/209 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F++LGL ++KAV +G +P+ IQ IP +L G ++V +T AYLLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q ++R + + R + L +E A G K++ A ++ G + +
Sbjct: 61 LQRIQRGKKAQVLIVTPTRELALQVADEVAKLG----KYLKVRAL---AVYGGQAIERQI 113
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +++ TP +L HI + +I+ V+LDEAD + D GF +I ILN L
Sbjct: 114 RGLRQG-VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL- 171
Query: 320 DSALKSNGQGFQTILVTAAI-AELSSLME 347
+N Q QT+L +A + A + ++++
Sbjct: 172 -----TNRQ--QTLLFSATLPAPIKTIIK 193
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 205 (77.2 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 59/209 (28%), Positives = 106/209 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F++LGL ++KAV +G +P+ IQ IP +L G ++V +T AYLLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q ++R + + R + L +E A G K++ A ++ G + +
Sbjct: 61 LQRIQRGKKAQVLIVTPTRELALQVADEVAKLG----KYLKVRAL---AVYGGQAIERQI 113
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +++ TP +L HI + +I+ V+LDEAD + D GF +I ILN L
Sbjct: 114 RGLRQG-VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL- 171
Query: 320 DSALKSNGQGFQTILVTAAI-AELSSLME 347
+N Q QT+L +A + A + ++++
Sbjct: 172 -----TNRQ--QTLLFSATLPAPIKTIIK 193
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 207 (77.9 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 60/197 (30%), Positives = 102/197 (51%)
Query: 128 ER-EKSSGSNAEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
ER +KS NA S F +L L + KA+++MG +EIQ IP +L G+ V+
Sbjct: 72 ERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLG 131
Query: 184 XXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHC 242
+TLA+L+P ++ML L KP + +++ + T E A Q F +AK +
Sbjct: 132 AAKTGSGKTLAFLIPTIEMLYA----LKFKPRNGTGVIIISPTRELALQIFGVAKELLKY 187
Query: 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADT 301
+ GG + +A D + +L+ATP +L H+++ + ++R +V+DEAD
Sbjct: 188 HHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADR 247
Query: 302 LFDRGFGPEISKILNPL 318
+ + GF E+ +I+ L
Sbjct: 248 ILEIGFEDEMRQIMKIL 264
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 210 (79.0 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 64/225 (28%), Positives = 109/225 (48%)
Query: 127 SEREKSSGSNAEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
S KS+ V FQ +GL A ++KA+ + G VP+ IQ IP ++ + VV
Sbjct: 74 SANRKSANLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVG 133
Query: 184 XXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 243
+T A+++P+++ L+ R ++L + E A Q + K +
Sbjct: 134 MARTGSGKTAAFVIPMIEKLKSHST-----KFGARGLILSPSRELALQTLKVVKELGKGT 188
Query: 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTL 302
L S + GG S + + ++IATP L H++ + N+ I+YVV DEAD L
Sbjct: 189 DLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRL 247
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLME 347
F+ GF ++++IL+ L + QT+L +A + + SL+E
Sbjct: 248 FEMGFAAQLTEILHGLPSTR--------QTLLFSATLPK--SLVE 282
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 208 (78.3 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 48/185 (25%), Positives = 95/185 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F+E+ + +I + + G+ PS IQ G+P +L+G+ ++ +TL + LP+
Sbjct: 221 ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM 280
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCA-------RLDSSMEN 251
V +E LP+ + P ++LC + E A Q + + ++ +L + +
Sbjct: 281 VLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAI 340
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG+ + E + + M+IATP +L + + ++ +Y+ LDEAD L D GF +I
Sbjct: 341 GGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDI 400
Query: 312 SKILN 316
+L+
Sbjct: 401 RSVLD 405
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 207 (77.9 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 72/267 (26%), Positives = 116/267 (43%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
S G + SF+ G E+++ V G P+ IQ P + G+ +V +
Sbjct: 149 SGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
Query: 192 TLAYLLP--L-VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS 248
TL YL+P L +Q +R D M P +VL T E A Q A +R+ +
Sbjct: 209 TLGYLIPGFLHLQRIRNDSR------MGPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 249 MENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
GG L D+ +++ATP + +E R +S I Y+VLDEAD + D GF
Sbjct: 263 CLYGGAPKGPQLRDLERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGF 321
Query: 308 GPEISKILN--PLKDSALKSNG---QGFQTI----LVTAAIAELSSLMECLERDNAGKVT 358
P+I KI+ P K L +G + I LV A + ++ E + + +
Sbjct: 322 EPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHI 381
Query: 359 AMLLEMD-QAEVFDLTESQDALKKKVV 384
++ M+ Q + + SQ+ K ++
Sbjct: 382 EVVAPMEKQRRLEQILRSQEPGSKVII 408
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 207 (77.9 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 172
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 173 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 231
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 207 (77.9 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 172
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 173 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 231
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 207 (77.9 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 172
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 173 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 231
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 207 (77.9 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 172
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 173 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 231
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 232 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
>TAIR|locus:2077592 [details] [associations]
symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0006655 "phosphatidylglycerol biosynthetic process"
evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
GermOnline:AT3G06980 Uniprot:Q8GUG7
Length = 781
Score = 208 (78.3 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 56/180 (31%), Positives = 90/180 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F E+G +M+KA+++ P+ IQ + V++GKS ++ +TLAYL+P++Q
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 202 MLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKA 258
LR +E K P PR IVL T E A Q + IS S + GG +
Sbjct: 435 RLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRT 494
Query: 259 -LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGFGPEISKILN 316
LE++ + +LIATP + + + ++R +LDE D LF D F + ++N
Sbjct: 495 QLENLEQG-VDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLIN 553
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 207 (77.9 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 54/187 (28%), Positives = 93/187 (49%)
Query: 133 SGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SGSN + + +F+E GL + K V K G P+ +Q GIP + G+ ++ +
Sbjct: 268 SGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGK 327
Query: 192 TLAYLLPLVQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++Q D + P AI++ T E +Q + A+ ++ + +
Sbjct: 328 TAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVV 387
Query: 250 ENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG+++ + +V +L ATP + I + +RY+VLDEAD + D GF
Sbjct: 388 VYGGINTGYTIREVLKG-CNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFE 446
Query: 309 PEISKIL 315
PE+ K++
Sbjct: 447 PEMRKLV 453
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 207 (77.9 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 194 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 251
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 252 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 310
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 311 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 207 (77.9 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 194 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 251
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 252 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 310
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 311 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 207 (77.9 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 196 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 253
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 254 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 312
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 313 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 207 (77.9 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 51/157 (32%), Positives = 78/157 (49%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQC G P L+G+ +V +TLAYLLP + + L + P +VL
Sbjct: 196 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYL--ERGDGPICLVLA 253
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E A Q +A C+RL S+ GG + D+ + + IATP ++ +E
Sbjct: 254 PTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLE 312
Query: 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 313 SGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 208 (78.3 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 62/216 (28%), Positives = 99/216 (45%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 82 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 141
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T +LLP+ + L+ A RA++L T E A Q K + L
Sbjct: 142 TGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKFTKELGKFTGLK 196
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+++ GG + + ++IATP ++ + ++ + YVV DEAD LF+ G
Sbjct: 197 TALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMG 256
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342
F ++ +I+ L G QT+L +A + +L
Sbjct: 257 FAEQLQEIIARLPG--------GHQTVLFSATLPKL 284
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 208 (78.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 55/186 (29%), Positives = 96/186 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+S+ + GL A+ I + +G P+ IQ IPA+ +G+ V+ +T+A+LLP+
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+ ++ D+ P+K P AI++ T E A Q F K + + GG K
Sbjct: 477 FRHIK-DQR--PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK- 532
Query: 259 LEDVSNAPIG--MLIATPS---EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
+ +++ G +++ TP +VL R + Y+VLDEAD +FD GF P++ +
Sbjct: 533 -DQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMR 591
Query: 314 ILNPLK 319
I+N ++
Sbjct: 592 IINNIR 597
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 204 (76.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 56/178 (31%), Positives = 93/178 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
SF +LGL+ ++ A+++ V P+ +Q IP++L G+ VV +TL+YLLPL
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKA 258
+Q L +L + PR +VL + E A Q +A+ + L +E G +
Sbjct: 187 LQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRI 246
Query: 259 LEDVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+S P +L+ATP + + ++ R +S + + ++VLDEADTL D F + IL
Sbjct: 247 RLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYIL 304
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 205 (77.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 65/246 (26%), Positives = 115/246 (46%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+++E GL +EM+K ++K+ PS IQ IP +L K ++ +T A+++PL+
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 202 MLRRDEALLPMKPMH--PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ + L MH P A+VL T E A Q KF S+ G +
Sbjct: 310 AISKLPPLTESN-MHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQ 368
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+S +++ATP +L +E R YVV+DEAD + D GF +++KIL+ L
Sbjct: 369 SFQMSQGA-HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL 427
Query: 319 KDS-ALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQD 377
S A + +G T +++ + L A + L+E + ++ ++ D
Sbjct: 428 PSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD 487
Query: 378 ALKKKV 383
++++V
Sbjct: 488 RVEQRV 493
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 201 (75.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 65/205 (31%), Positives = 99/205 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F L + ++KA+ + P+EIQ IP +L V+ +T A+ LP++Q
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS---SMENGGVSSKA 258
L ++ P KP RA+VL T E A Q H K H + + GGVS+K
Sbjct: 66 QLI---SVQPCKP-ELRALVLTPTRELAQQ-VH--KSFCHYGQFTDVTIGIAYGGVSTK- 117
Query: 259 LEDVSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +S +G+ LIATP +L + +VS +I +V DEAD + D GF EI +I
Sbjct: 118 -KQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
Query: 317 PLKDSALKSNGQGFQTILVTAAIAE 341
L + QT+L +A A+
Sbjct: 177 YLPKTK--------QTLLFSATFAD 193
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 201 (75.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 65/205 (31%), Positives = 99/205 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F L + ++KA+ + P+EIQ IP +L V+ +T A+ LP++Q
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS---SMENGGVSSKA 258
L ++ P KP RA+VL T E A Q H K H + + GGVS+K
Sbjct: 66 QLI---SVQPCKP-ELRALVLTPTRELAQQ-VH--KSFCHYGQFTDVTIGIAYGGVSTK- 117
Query: 259 LEDVSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +S +G+ LIATP +L + +VS +I +V DEAD + D GF EI +I
Sbjct: 118 -KQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
Query: 317 PLKDSALKSNGQGFQTILVTAAIAE 341
L + QT+L +A A+
Sbjct: 177 YLPKTK--------QTLLFSATFAD 193
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 203 (76.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 55/192 (28%), Positives = 97/192 (50%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLXX 185
++E + N SF +LGL+ ++ A+++ V P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPALRNLSSKDSFADLGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLGGRHILCAA 172
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+TL Y+LPL+Q L +L + PR +VL + E A+Q +A+ + L
Sbjct: 173 ETGSGKTLGYMLPLLQRLLGQPSLDSCRIPAPRGLVLVPSRELAEQVRAVAQPLGSSLGL 232
Query: 246 DSSMENGG--VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
GG +S L+ P +L+ATP + + ++ + +S + + ++VLDEADTL
Sbjct: 233 QVRELGGGHGMSRIRLQLSKQPPADVLVATPGALWKGLKSQLISLEQLSFLVLDEADTLL 292
Query: 304 DRGFGPEISKIL 315
D F + IL
Sbjct: 293 DESFLELVDYIL 304
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 203 (76.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 55/177 (31%), Positives = 91/177 (51%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ +GL +++AV +G P+ IQ IP L GK L +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQ-EKIPLALEGKDSWLGAARGQGKTAAYAIPMLQL 67
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVS--SKAL 259
L +A+ P R +VL T++ A Q M + ++ +CAR D + N + S +
Sbjct: 68 LLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCAR-DIRVANVSAAEDSASQ 126
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKIL 315
V +++ TPS +L H++ N+ D + +V+DEAD LF GF E+ +L
Sbjct: 127 RAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVDEADLLFSFGFEEELKSLL 183
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 203 (76.5 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 54/188 (28%), Positives = 89/188 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + + +F E A +++ +++ P+ IQ G P L+G +V +T
Sbjct: 74 GHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 133
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A S RL S+ G
Sbjct: 134 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYG 191
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 192 GAPKGPQIRDLERG-VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQI 250
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 251 RKIVDQIR 258
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 203 (76.5 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 54/188 (28%), Positives = 89/188 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + + +F E A +++ +++ P+ IQ G P L+G +V +T
Sbjct: 82 GHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 141
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A S RL S+ G
Sbjct: 142 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYG 199
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 200 GAPKGPQIRDLERG-VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQI 258
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 259 RKIVDQIR 266
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 202 (76.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 64/246 (26%), Positives = 117/246 (47%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLXX 185
++E + N +F +LGL+ ++ A++K + P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQPTSVQSKTIPPLLRGRHILCAA 172
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+TL+YLLPL Q L + L PR +VL + E A+Q +A+ + L
Sbjct: 173 ETGSGKTLSYLLPLFQRLLKGPELDSRSSTAPRGLVLVPSRELAEQVQAVAQSLGRYLDL 232
Query: 246 DSSMENGGVSSKALE-DVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
GG+ L+ + P +L+ATP + + ++ + +S + ++VLDE DTL
Sbjct: 233 QVIELGGGLGMNRLKLQLGKWPSADVLVATPGALWKALKSQLISLHHLNFIVLDEVDTLL 292
Query: 304 DRGFGPEISKIL--NPLKDSALKSN---GQGFQTILVTAAIAE-LSSLM-ECLERDNAGK 356
D F + IL +P+ +S + Q ++V A E L+ L+ + D+
Sbjct: 293 DESFVELVDYILGKSPIAESPAELEDPFNPKAQLVMVGATFPEGLNQLLSKVTSPDSLTT 352
Query: 357 VTAMLL 362
+T+ L
Sbjct: 353 ITSSKL 358
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 204 (76.9 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 49/175 (28%), Positives = 87/175 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F EL L +++A E +G P+ IQ IP L G+ + +T A+ LP ++
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R ++L T E A Q M + ++ + + GG+S + E
Sbjct: 228 RL----LFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEV 283
Query: 262 VSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
V + +++ATP ++ H+ + +V DD+ ++LDEAD L GF EI++++
Sbjct: 284 VLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELV 338
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 208 (78.3 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 54/195 (27%), Positives = 97/195 (49%)
Query: 131 KSSGSNA--EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXX 188
++ G A ++ +F L L ++K + +G PS IQ IP L GK ++
Sbjct: 219 ETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTG 278
Query: 189 XXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAKFISHCAR 244
+T A+++P+++ L P K R IVL T E A D G +A+F+S
Sbjct: 279 SGKTAAFMIPIIERL----LYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSG--- 331
Query: 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLF 303
+ + GG++ + E + + ++IATP + HI + + + D + +V+DEAD +
Sbjct: 332 ITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRML 391
Query: 304 DRGFGPEISKILNPL 318
+ GF E+++I+ L
Sbjct: 392 EEGFQDELNEIMGLL 406
Score = 37 (18.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 20 EQTEQTEAEKLRK 32
+Q E+TE EK+ K
Sbjct: 129 KQEEETEKEKVEK 141
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 200 (75.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 56/187 (29%), Positives = 91/187 (48%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
EVV +F ELG++ E++KA E++G PS+IQ +P L GK V+ +T A+ +
Sbjct: 6 EVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAI 65
Query: 198 PLVQ-MLRRDEALLPMKPMHPR----AIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
P++Q +L P K P A VL T E A Q + + L ++ G
Sbjct: 66 PILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVG 125
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G+ +++ATP + H+ D + S ++Y+VLDEAD L + F +
Sbjct: 126 GIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSL 185
Query: 312 SKILNPL 318
++IL +
Sbjct: 186 NQILEEI 192
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 203 (76.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 61/213 (28%), Positives = 104/213 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF + + M + VE+ G + IQ +P V +GK ++ +T A+LLP++
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358
Query: 202 --MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+L +D +PR I+L T E ADQ ++ + S+ + ++ GG++
Sbjct: 359 RLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYN 418
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPL 318
+ +++ T V ED + D RY+VLDEAD + D GFGPEI +I+N
Sbjct: 419 KSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIIN-Y 477
Query: 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLER 351
K+ + N + QT++ +A SS+ E +
Sbjct: 478 KN--MPKNDKR-QTMMFSATFP--SSVQEAARK 505
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 203 (76.5 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 61/213 (28%), Positives = 104/213 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF + + M + VE+ G + IQ +P V +GK ++ +T A+LLP++
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358
Query: 202 --MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+L +D +PR I+L T E ADQ ++ + S+ + ++ GG++
Sbjct: 359 RLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYN 418
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPL 318
+ +++ T V ED + D RY+VLDEAD + D GFGPEI +I+N
Sbjct: 419 KSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIIN-Y 477
Query: 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLER 351
K+ + N + QT++ +A SS+ E +
Sbjct: 478 KN--MPKNDKR-QTMMFSATFP--SSVQEAARK 505
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 197 (74.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 64/254 (25%), Positives = 111/254 (43%)
Query: 85 EKDSFILENFKLRKLNGSAKTXXXXXXXXXXXXXXXXXXXIASEREKSSGSNAEVVSSFQ 144
E+ + +LE K K+ + SE+EK + E +F
Sbjct: 112 EETNTLLEKKKKIKMEKEEEKMMNGDSHTHSTEPAASSTDSDSEQEKETPEQRE--GAFS 169
Query: 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLR 204
+ IK ++ G+ +IQ AV +GK ++ +T ++ +PLV+ L+
Sbjct: 170 NFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEKLQ 229
Query: 205 R-DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS 263
D+ +P P+ +VL T E A Q K I+ +L + GG S D
Sbjct: 230 SGDQERRRGRP--PKVLVLAPTRELAIQVTKDFKDITR--KLSVTCFYGGSSYNPQIDAI 285
Query: 264 NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 323
+ I +L+ TP + H+++ + +++VVLDE D + D GF ++ +IL+ S
Sbjct: 286 RSGIDVLVGTPGRIRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSA---SYK 342
Query: 324 KSNGQGFQTILVTA 337
K Q QT+L +A
Sbjct: 343 KDAEQKPQTLLFSA 356
Score = 49 (22.3 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 15 LEGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQ 55
LE +E+T T EK +K+KK+K + ++ + L K+
Sbjct: 83 LEEEEEETTSTLLEK-KKKKKIKLEKEEMMEETNTLLEKKK 122
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 186 (70.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 48/188 (25%), Positives = 96/188 (51%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
EK G + E + F L ++ K++E+MG + IQ I +L GK ++
Sbjct: 109 EKELGISKESIE-FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGS 167
Query: 190 XRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSS 248
+TLA+L+P +++L + KP + +++ + T E A Q + +A+ +
Sbjct: 168 GKTLAFLIPAIEVLVKSN----FKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHG 223
Query: 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGF 307
+ GG S K E+ + +L+ATP +L H+++ + +++ +++DEAD + + GF
Sbjct: 224 IVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGF 283
Query: 308 GPEISKIL 315
E+ +I+
Sbjct: 284 EEEMHQII 291
Score = 58 (25.5 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 22 TEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRP 64
T T ++K+++ K+ K K + L+ SVKQI S V+ P
Sbjct: 26 TTTTASKKVKQTKQSKAQAKEIQELASTP-SVKQIQSQKVLVP 67
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 53/189 (28%), Positives = 95/189 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++QE L E+++A+ ++G PS IQ IP L G+ ++ +T A+++P+
Sbjct: 412 IRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPM 471
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA-RLDSSMENGGVSS 256
+ + + L + P A+V+ T E Q F H R+ S + +
Sbjct: 472 LIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIED 531
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+A + VS ++IATP + +E R + + Y+VLDEAD + D GF P+++ +L+
Sbjct: 532 QAYQ-VSKG-CEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLD 589
Query: 317 PLKDSALKS 325
+ S LKS
Sbjct: 590 AMPSSFLKS 598
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 200 (75.5 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 51/181 (28%), Positives = 89/181 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V++F+E G ++K V+++G P+ IQ P ++G+ +V +TL+Y LP
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKA 258
+ + L P P +VL T E A Q +R+ ++ GGV
Sbjct: 181 IVHINAQPLLSPGDG--PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQ 238
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ + + IATP +L ++ + + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 239 IRDLIRG-VEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 319 K 319
+
Sbjct: 298 R 298
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 198 (74.8 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 70/252 (27%), Positives = 112/252 (44%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F EL L ++KAV G P+ +Q +P L ++ +T A++LP +Q
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P P PR +VL T E A Q + R+ S GG+ A
Sbjct: 62 RLSSP----PQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQL 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +AP+ ++ATP ++ ++ R++ + +VLDEAD + D GF ++ +I
Sbjct: 118 RLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIA--AAS 175
Query: 321 SALKSNGQGFQTILVTA----AIAELSS-LMECLER-DNAG-KVTAMLLEMDQAEVFDLT 373
A + QT+L TA A+A L+ L+ ER D AG K T +E DL
Sbjct: 176 PATR------QTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLH 229
Query: 374 ESQDALKKKVVE 385
L+ + +
Sbjct: 230 HKNRLLRHLITD 241
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 203 (76.5 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 66/239 (27%), Positives = 120/239 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF GL ++ +++ G P+ IQ IP +L + +V +T A++LP+V+
Sbjct: 138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ + RA++L + E A Q F++ K + L S + GG S +
Sbjct: 198 KLKSHSGKIGA-----RAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFG 252
Query: 262 VSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ ++IATP L H++ + N+ + YVV DEAD LF+ GF +++++L L
Sbjct: 253 MMMTNPDVIIATPGRFL-HLKVEMNLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPT 311
Query: 321 SALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDAL 379
+ QT+L +A + +SL++ ++ AG V +L+ +D AE ++E+ + L
Sbjct: 312 TR--------QTLLFSATLP--NSLVDFVK---AGLVNPVLVRLD-AET-KVSENLEML 355
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 200 (75.5 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 52/179 (29%), Positives = 85/179 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL +++A+E G P+ +Q IPAVL G+ +++ +T + LP+++
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 202 MLRRDEALLPMK-----PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
L + +P K P PR +VL T E A Q K + + S+ GGV
Sbjct: 62 RLFPNG--VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGM 119
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+A P +L +V + +VLDEAD + D GF ++ K+L
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 198 (74.8 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 66/246 (26%), Positives = 117/246 (47%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLXX 185
++E + N SF +LGL+ ++ A+++ + P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAA 172
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+TL+YLLPL Q L R L PR +VL + E A+Q +A+ + L
Sbjct: 173 ETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLVPSRELAEQVQAVAQSLGGYLGL 232
Query: 246 DSSMENGGVSSKALE-DVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
GG+ L+ + P +L+ATP + + ++ + +S + ++VLDE DTL
Sbjct: 233 QVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKSQLISLQHLNFIVLDEVDTLL 292
Query: 304 DRGFGPEISKIL--NPLKDSALKSN---GQGFQTILVTAAIAE-LSSLM-ECLERDNAGK 356
D F + IL +P+ +S + Q +LV A E L+ L+ + D+
Sbjct: 293 DESFLELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFPEGLNQLLSKVTSPDSLTT 352
Query: 357 VTAMLL 362
+T+ L
Sbjct: 353 ITSSKL 358
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 198 (74.8 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 58/208 (27%), Positives = 109/208 (52%)
Query: 143 FQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
F EL L ++I+A+++ G V + +Q IP + + K VV+ +TLA+LLP +
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKA- 258
+++RR + P KP +++ T E + Q +A+ F+S ++S + GG +A
Sbjct: 76 EIIRRSNSY-PPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEAD 134
Query: 259 LEDVSNAPIGMLIATP---SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +LI TP S++++ +E + ++ ++LDEAD L D GF +++ I+
Sbjct: 135 MNTLEEEGANLLIGTPGRLSDMMKRMEFLDFR--NLEILILDEADRLLDMGFQKQVNYII 192
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAELS 343
+ L K G + T A+A+L+
Sbjct: 193 SRLP----KQRRTGLFSATQTQAVADLA 216
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 201 (75.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 57/190 (30%), Positives = 95/190 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ S+ E G E+I ++K+G P+ IQ IP L + ++ +TLA+L+PL
Sbjct: 393 IRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPL 452
Query: 200 ---VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
+Q L + E L + P AI++ T E A Q + + + GG+S
Sbjct: 453 LSWIQSLPKIERLEDVD-QGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSR 511
Query: 257 KALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ E +G ++IATP ++ +E+R + + Y+VLDEAD + D GF P++ KI
Sbjct: 512 E--EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 569
Query: 315 LNPLKDSALK 324
L + + LK
Sbjct: 570 LEYMPVTNLK 579
Score = 42 (19.8 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 19 KEQTE-QTEAEKLRKRKKMKR 38
K +TE + E EK+R KKMKR
Sbjct: 329 KRRTEAEKEQEKVRL-KKMKR 348
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 201 (75.8 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 72/272 (26%), Positives = 125/272 (45%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+ S N + F EL + A++ + ++ P+ IQ P +L G+ VV
Sbjct: 156 DPKSSENLLPILQFDELDVSAKLREGLKNYK--EPTPIQAATWPYLLAGRDVVGIAETGS 213
Query: 190 XRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
+T+A+ +P +Q L L K + PR +V+ T E A Q + + L + +
Sbjct: 214 GKTVAFGIPALQYLN---GLSDNKSV-PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVV 269
Query: 250 ENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG S+ NA + +I TP +L I D ++ C + Y+VLDEAD + D GF
Sbjct: 270 VYGGAPKSEQARAAKNASV--IIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFE 327
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTAMLLEMDQA 367
+I I++ D NG QT+ +A E + +L +D K+T E+ +
Sbjct: 328 QDIRNIISHTPDPT--RNGSR-QTVFFSATWPESVRALAATFLKDPV-KITIGSDELAAS 383
Query: 368 E-VFDLTESQD--ALKKKVVEAMDSLHLSAPG 396
+ + + E D K+++++ + HLS+ G
Sbjct: 384 QNITQIVEILDDPRSKERMLDNLLRKHLSSGG 415
Score = 37 (18.1 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 4 SPSTEEQFIKYLEGAKEQTEQTEAEKLR---KRKKMKRTGKS 42
S +E+ K+ E K + ++ A+K R K KK + GKS
Sbjct: 67 SVKRKEKKSKH-EHKKHKKDKPSADKDRISKKDKKKSKKGKS 107
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 197 (74.4 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 54/193 (27%), Positives = 96/193 (49%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLX 184
++ E + N SF +LGL+ ++ A+++ V P+ +Q IP +L G+ ++
Sbjct: 112 AQHEAPALRNLSSKGSFADLGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLRGRHILCA 171
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+TL Y+LPL+Q L +L + PR +VL + E A+Q +A+ +
Sbjct: 172 AETGSGKTLGYMLPLLQRLLGQPSLYTSRIPAPRGLVLVPSRELAEQVRAVAQPLGSSLG 231
Query: 245 LDSSMENGG--VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
L GG +S L+ + P +L+ATP + + ++ + +S + ++VLDE DTL
Sbjct: 232 LRVQELGGGHGMSRVRLQLSKHPPAEVLVATPGALWKALKGQLISLAQLSFLVLDEVDTL 291
Query: 303 FDRGFGPEISKIL 315
D F + IL
Sbjct: 292 LDESFLELVDYIL 304
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 202 (76.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 54/192 (28%), Positives = 93/192 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL-- 199
+++E G E+ +AV+++G P+ IQ IP L + V+ +T A+LLPL
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 200 -VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+ L + E + + P AI++ T E A Q + + GG S +
Sbjct: 362 WITSLPKMERQ-EHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASRED 420
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ ++IATP +L +E+R + + YV+LDEAD + D GF P++ K+L +
Sbjct: 421 QGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYM 480
Query: 319 KDSALKSNGQGF 330
D+ +K + F
Sbjct: 481 PDTNMKKDTDEF 492
Score = 38 (18.4 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 331 QTILVTAAIAELSSLM--ECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 388
QT++ TA ++ + + L R + + ++ E +D +KK+VE ++
Sbjct: 510 QTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLE 569
Query: 389 S 389
S
Sbjct: 570 S 570
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 199 (75.1 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 53/178 (29%), Positives = 87/178 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+E G ++ + K G P+ IQ G P ++G+ +V +TLAY+LP V
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALED 261
+ L + P A+VL T E A Q +A +F S+ ++ + G + D
Sbjct: 219 INNQPRL--ERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARD 276
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + ++IATP ++ +E S Y+VLDEAD + D GF P+I KI+ ++
Sbjct: 277 LERG-VEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR 333
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 195 (73.7 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 55/173 (31%), Positives = 88/173 (50%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++S FQ LGL ++ ++ K G P+ IQ IP V+ G+ +V +TLA+ P
Sbjct: 5 IMSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAP 64
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS--MENGGVSS 256
++ L R+ + P++ R +VL T E A Q F ++ A L+ M GG +
Sbjct: 65 ILDRLSRNASPAPVRGT--RVLVLAPTRELAGQ--IATSFGTYGAGLNLRVVMVCGG--A 118
Query: 257 KALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
K + G +L+ATP ++ +E R VS D + ++LDEAD + D GF
Sbjct: 119 KIGGQIRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGF 171
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 196 (74.1 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 57/193 (29%), Positives = 95/193 (49%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLX 184
++ E + N SF +LGL+ +++A++ V P+ +Q IP +L G+ ++
Sbjct: 108 AQHEVPALRNLSSEGSFADLGLEPPVLRALKDAAPEVLRPTTVQSSTIPPLLRGRHILCA 167
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK--FISHC 242
+TL YLLPL+Q L L P PR +VL + E A+Q +A+ IS
Sbjct: 168 AETGSGKTLGYLLPLLQRLLGRPGLNPHSTPAPRGLVLVPSRELAEQVRAVAQPLGISLG 227
Query: 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
R+ G++ ++ P +L+ATP + + ++ VS + ++VLDEADTL
Sbjct: 228 LRVRELGGGHGMNRIRVQLSKQPPADVLVATPGALWKALKSHLVSLKQLSFLVLDEADTL 287
Query: 303 FDRGFGPEISKIL 315
D F + IL
Sbjct: 288 LDESFLELVDYIL 300
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 197 (74.4 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 51/178 (28%), Positives = 95/178 (53%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F ELGL + ++ +++MG +EIQ IP +L G+ V+ +TLA+L+P ++M
Sbjct: 130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 189
Query: 203 LRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + L KP + +++ + T E A Q F +A+ + + GG + +A +
Sbjct: 190 L----SALRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAE 245
Query: 262 VSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H+++ +++ +V+DEAD + + GF E+ +I+ L
Sbjct: 246 KLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL 303
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 195 (73.7 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 36 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 95
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFH-----MAKFISH--CARLDSSMEN 251
+ E LP K P +++C + A H K + ++ ++
Sbjct: 96 IMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCI 155
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG+S K +V + +ATP ++ + + VS D RY+ LDEAD + D GF +I
Sbjct: 156 GGMSVKEQMEV------VKLATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDI 209
Query: 312 SKILNPLK 319
I + K
Sbjct: 210 RTIFSYFK 217
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 197 (74.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 52/193 (26%), Positives = 97/193 (50%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
++SG N V++F E+ L + + + P+ +Q IP +L G+ ++
Sbjct: 148 ETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
Query: 190 XRTLAYLLPLVQMLRRDEALL-PM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T A+ P++ + +D+ + P + ++P A++L T E A Q AK S+ +
Sbjct: 208 GKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVK 267
Query: 247 SSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
+ GG ++ L ++ + +L+ATP + +E VS IR++ LDEAD + D
Sbjct: 268 VVVAYGGTPINQQLRELERG-VDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 306 GFGPEISKILNPL 318
GF P+I KI+ +
Sbjct: 327 GFEPQIRKIVEQM 339
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 199 (75.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 71/250 (28%), Positives = 123/250 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF GL ++ + K G P+ IQ IP ++ G+ VV +T A++LPL++
Sbjct: 100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ + P RA++L + E A Q + K SH L S + GG S + ED
Sbjct: 160 RLKSRQ------PGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLE--ED 211
Query: 262 VSNAPI--GMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
S +++ TP L H++ + ++Y+V DEAD LF+ GF +++++L
Sbjct: 212 FSKMMTKPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELL--- 267
Query: 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMD-QAEVFD-LTESQ 376
++L SN Q ++L +A + SL++ + AG +L+ +D ++++ D L +
Sbjct: 268 --ASLPSNRQ---SLLFSATLPR--SLVDFAK---AGLTNPVLVRLDAESKISDQLQMAY 317
Query: 377 DALKKKVVEA 386
KK EA
Sbjct: 318 FTTKKNEREA 327
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 196 (74.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 51/182 (28%), Positives = 90/182 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E G +++ V+ G P+ IQC G P L+G+ ++ +TL+Y LP
Sbjct: 126 ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 185
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSK 257
+ + L P +VL T E A Q +KF +R+ ++ GG
Sbjct: 186 IVHINAQPQL--QYGDGPIVLVLAPTRELAVQIQTECSKF-GKSSRIRNTCVYGGAPKGP 242
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ D++ + + IATP ++ +E + + Y+VLDEAD + D GF P+I KI++
Sbjct: 243 QIRDLARG-VEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQ 301
Query: 318 LK 319
++
Sbjct: 302 IR 303
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 205 (77.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 62/240 (25%), Positives = 117/240 (48%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++ + G+ +M+ ++K P+ IQ IP++++G+ V+ +TLA+LLP+
Sbjct: 303 IKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPM 362
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKA 258
+ + D+ L + P A++L T E A Q + A + L + GGV S+
Sbjct: 363 FRHIL-DQPELE-EGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQ 420
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPEISKIL 315
+ D+ +++ TP ++ + + ++R Y+VLDEAD +FD+GF P+I K++
Sbjct: 421 IADLKRGA-EIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVV 479
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTES 375
N ++ QT+L +A ME L R K +L+ D+T++
Sbjct: 480 NNIRPDK--------QTVLFSATFPRH---MEALARKVLDKPVEILVGGKSVVCSDITQN 528
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 17 GAKEQTEQTEAEKLRKRKKMKRTGK 41
G++E E + ++ R+R++ + T +
Sbjct: 29 GSREHREHRDRDRDRERRRERDTDR 53
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 19 KEQTEQTEAEKLRKRKKMKRTGKSLVNLSK 48
+ + T+ EK R R+K + K SK
Sbjct: 45 RRRERDTDREKTRDREKQRDAEKKKEKESK 74
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 63/229 (27%), Positives = 117/229 (51%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLF-VPSEIQCVGIPAVLNGKSVVLXXXXX 188
+++G N ++SF ++ L E+I+ + + P+ +Q IP ++NG+ ++
Sbjct: 284 EATGQNVPPNITSFDDVQL-TEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTG 342
Query: 189 XXRTLAYLLPLV-QMLRRDEALLPM-------KPMHPRAIVLCTTEESADQGFHMAKFIS 240
+T A+L+P++ QM P + +P +VL T E A Q F AK +
Sbjct: 343 SGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA 402
Query: 241 HCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
+ +R+ ++ GG + S+ + ++ +++ATP + I V ++IR++VLDEA
Sbjct: 403 YRSRMRPAVLYGGNNTSEQMRELDRG-CHLIVATPGRLEDMITRGKVGLENIRFLVLDEA 461
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAELSS 344
D + D GF P+I +I+ L + GQ QT++ +A I EL+S
Sbjct: 462 DRMLDMGFEPQIRRIVEQLN---MPPTGQR-QTLMFSATFPKQIQELAS 506
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 199 (75.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 61/196 (31%), Positives = 100/196 (51%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E+E+ E SF+ELGL + +I+A+ K G+ P+ IQ IP +L GK VV
Sbjct: 34 EQEEEQ-KEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKT 92
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMAKFISHCARLD 246
+TLAYLLPL+Q L +++ K + P A +L + E Q + ++ I C
Sbjct: 93 GSGKTLAYLLPLLQKLFSADSV-SKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQL 151
Query: 247 SSMENGGVSSKALEDVSNAPIGM---LIATPSEVLQH-----IEDRNVSCDDIRYVVLDE 298
+++ SS + D+ NA G+ L++TP+ + + +E VS + + +VLDE
Sbjct: 152 KAVQL--TSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVS-ESLSILVLDE 208
Query: 299 ADTLFDRGFGPEISKI 314
AD L G+ + +
Sbjct: 209 ADLLLSYGYEDNLRSV 224
Score = 38 (18.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 352 DNAGKVTAMLLEMDQAEVFDLTESQDALK-KKVV 384
DN VT+++ Q + T S D K KK++
Sbjct: 219 DNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLI 252
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 76/260 (29%), Positives = 115/260 (44%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F+ G + + ++ G VP+ IQ IP L G+ V+ +T A+LLP+
Sbjct: 203 IVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV 262
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKA 258
+ LR AL K P +VL T E A Q AK +S L +++ GG+ +
Sbjct: 263 I--LR---ALSQSKS--PSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPP 315
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
I ++IATP +L I+ R+V I+ VV+DEADT+ GF ++ +L L
Sbjct: 316 QRHRLRQRIQVIIATPGRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQL 375
Query: 319 KDSALKSNGQGFQTILVTAAIAELSSLMEC-LERDNAGKVTA--MLLEMDQAEVFDLTES 375
QT+L +A I + C L RD +TA L L
Sbjct: 376 PHDC--------QTVLASATIPASVEQLACQLLRDPVA-ITAGERNLPCPSVRQIVLWVE 426
Query: 376 QDALKKKVVEAMDSLHLSAP 395
+ A KKK+ E ++ L P
Sbjct: 427 EPAKKKKLFEILNDKKLFKP 446
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 197 (74.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/214 (24%), Positives = 103/214 (48%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
+S++ + + + + +F + E IK ++ G+ IQ V GK ++
Sbjct: 119 SSDKAEETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQA 178
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR- 244
+T ++ +PL++ L+R++ + K P+ +VL T E A+Q +AK R
Sbjct: 179 RTGTGKTFSFAIPLIERLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITRK 234
Query: 245 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
L + GG S ++ + + N I +L+ TP + H++ + +R+VVLDE D +
Sbjct: 235 LSVACFYGGTSYQSQINQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQML 293
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337
D GF ++ I++ + + N Q T+L +A
Sbjct: 294 DLGFAEQVEDIIHESYKTDSEDNPQ---TLLFSA 324
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 57/184 (30%), Positives = 88/184 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF ELG+ A + + ++G P+ +Q IPAVL+G+ V+ +T A+ LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN----GGV 254
+Q L EA K R +VL T E A Q F+S+ + + ++ GGV
Sbjct: 68 LQRL--SEAKSADKSAGVVRCLVLVPTRELAQQVAD--SFLSYASHFNGQLKIVAAFGGV 123
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
S A +L+ATP +L + + + VLDEAD + GF E+ ++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 315 LNPL 318
L L
Sbjct: 184 LAAL 187
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 57/184 (30%), Positives = 88/184 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF ELG+ A + + ++G P+ +Q IPAVL+G+ V+ +T A+ LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN----GGV 254
+Q L EA K R +VL T E A Q F+S+ + + ++ GGV
Sbjct: 68 LQRL--SEAKSADKSAGVVRCLVLVPTRELAQQVAD--SFLSYASHFNGQLKIVAAFGGV 123
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
S A +L+ATP +L + + + VLDEAD + GF E+ ++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 315 LNPL 318
L L
Sbjct: 184 LAAL 187
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 196 (74.1 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 61/201 (30%), Positives = 101/201 (50%)
Query: 135 SNAEV-VSSFQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXX 190
SNA + ++F + L ++ + KM + P+ IQ +PA+LN K +
Sbjct: 131 SNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSG 190
Query: 191 RTLAYLLPLVQMLRRDEALLPMKPMHPR-----AIVLCTTEESADQGFHMAKFISHCAR- 244
+TLAYLLP+VQ L R LP K +H R A+++ T E Q +++A +++
Sbjct: 191 KTLAYLLPIVQRLIR----LP-KNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 245 --LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADT 301
+ S GG K+ + + +LI TP + H+E+ + +R+VVLDE D
Sbjct: 246 HWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDR 305
Query: 302 LFDRGFGPEISKILNPLKDSA 322
L D GF ++KIL+ L+ +
Sbjct: 306 LMDMGFEETLTKILSYLESQS 326
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 196 (74.1 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 73/268 (27%), Positives = 127/268 (47%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SGS+ + +F+E L + K V K G + IQ IP ++ G+ ++ +
Sbjct: 277 SGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGK 336
Query: 192 TLAYLLPLVQ--MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ M++ E+ P AI++ T E +Q + A+ S+ + +
Sbjct: 337 TAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVV 396
Query: 250 ENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG +L+ +S +L ATP +L I + +RY+VLDEAD + D GF
Sbjct: 397 IYGGTQMFHSLKQISEG-CNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFR 455
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAI-AELSSLM-ECLERDN----AGKVTAMLL 362
+I N LK S + S + QT++ +A + + SL E L+ D G+V
Sbjct: 456 EDIE---NLLKSSGMPSKEER-QTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACS 511
Query: 363 EMDQAEVFDLTESQDALKKKVVEAMDSL 390
+++Q V ++ E K K++E + +
Sbjct: 512 DVEQM-VIEVDEF--GKKDKLMEILQEI 536
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 192 (72.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 51/170 (30%), Positives = 85/170 (50%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + GL+ ++I +EK G + IQ + +P +L+G+ + +TLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L A PRAI++ T E A Q F+ A+ + L +++ GG S K L
Sbjct: 71 LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
+ + + +LI T ++ + R + + I+ VVLDEAD +FD GF +I
Sbjct: 131 LQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI 179
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 192 (72.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 51/170 (30%), Positives = 85/170 (50%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + GL+ ++I +EK G + IQ + +P +L+G+ + +TLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L A PRAI++ T E A Q F+ A+ + L +++ GG S K L
Sbjct: 71 LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
+ + + +LI T ++ + R + + I+ VVLDEAD +FD GF +I
Sbjct: 131 LQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI 179
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/186 (28%), Positives = 90/186 (48%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E F++LGL ++K + +EIQ IP + G+ ++ +TLA++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 198 PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGG 253
P++ + +A PR ++L T E A Q + M +S+ A L + EN
Sbjct: 62 PMLHKSLKTKAF---SAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFN 118
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
KAL + P ++ATP + H++ R++ + + +VLDEAD + D GF E+ +
Sbjct: 119 DQVKAL---ARGP-RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRR 174
Query: 314 ILNPLK 319
I N K
Sbjct: 175 IHNAAK 180
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 192 (72.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/186 (28%), Positives = 90/186 (48%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E F++LGL ++K + +EIQ IP + G+ ++ +TLA++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 198 PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGG 253
P++ + +A PR ++L T E A Q + M +S+ A L + EN
Sbjct: 62 PMLHKSLKTKAF---SAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFN 118
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
KAL + P ++ATP + H++ R++ + + +VLDEAD + D GF E+ +
Sbjct: 119 DQVKAL---ARGP-RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRR 174
Query: 314 ILNPLK 319
I N K
Sbjct: 175 IHNAAK 180
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 48/179 (26%), Positives = 88/179 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F+E L + + V + G + +Q IP ++ G+ ++ +T A+LLP+
Sbjct: 273 ILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPI 332
Query: 200 VQMLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS- 256
+ + + A ++ P AI++ T E +Q + A+ S+ + + GG+
Sbjct: 333 LSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPV 392
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A+ DV +L ATP +L + + +RY+VLDEAD + D GF PEI K++
Sbjct: 393 HAMRDVEKG-CNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLM 450
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/188 (27%), Positives = 88/188 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q GIP +L G+ ++ +
Sbjct: 257 SGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGK 316
Query: 192 TLAYLLPLVQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + RD P I++ T E +Q F A+ S + +
Sbjct: 317 TAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVV 376
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + IRY+VLDEAD + D GFG
Sbjct: 377 IYGGTQLGHSIRQIMQG-CNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFG 435
Query: 309 PEISKILN 316
PE+ K+++
Sbjct: 436 PEMKKLIS 443
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 192 (72.6 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 53/193 (27%), Positives = 95/193 (49%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
++++ E ++ E SF EL L E+I+A + + P+ IQ IP L G ++
Sbjct: 67 VSTQNENTNED--ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGL 124
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+T A+ +P++ L D+ +P + A +L T E A Q +
Sbjct: 125 AQTGSGKTAAFAIPILNRLWHDQ-----EPYY--ACILAPTRELAQQIKETFDSLGSLMG 177
Query: 245 LDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTL 302
+ S+ GG++ D+ P ++IATP ++ H+E+ + S ++++V+DEAD L
Sbjct: 178 VRSTCIVGGMNMMDQARDLMRKP-HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRL 236
Query: 303 FDRGFGPEISKIL 315
D FGP + +IL
Sbjct: 237 LDMEFGPVLDRIL 249
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 202 (76.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 51/180 (28%), Positives = 91/180 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF G +++A+ K + P+ IQ IP L+G+ ++ +T ++ P
Sbjct: 304 VTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPS 363
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ + D+ L K P A+ L T E A Q + S +L +++ GGVS +
Sbjct: 364 ISHIM-DQPYLE-KGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQ 421
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
A +++ATP ++ I+ + + + Y+VLDEAD +FD GFGP++ I+N ++
Sbjct: 422 CKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVR 481
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 22 TEQTEAEKLRKRKKMKRTGKSLVN 45
TE+ E +RK ++ TG L+N
Sbjct: 280 TEEQVFE-IRKNLDIRMTGTDLIN 302
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 193 (73.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 192 (72.6 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 49/199 (24%), Positives = 100/199 (50%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ + S+ +V+ F+ +KA+++MG +++Q IP +L G+ V+
Sbjct: 97 DNDNDDDSSEDVL--FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKT 154
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLD 246
+TLA+L+P +++L L +KP + A+++ T T E A Q F +A+ +
Sbjct: 155 GSGKTLAFLIPAIELLYS----LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT 210
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+ GG + + +L+ATP +L H+++ +++ +V+DEAD + + G
Sbjct: 211 CGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIG 270
Query: 307 FGPEISKILNPLKDSALKS 325
F E+ +I+ L + +S
Sbjct: 271 FEDEMKQIIKVLPNENRQS 289
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 192 (72.6 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 49/199 (24%), Positives = 100/199 (50%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ + S+ +V+ F+ +KA+++MG +++Q IP +L G+ V+
Sbjct: 97 DNDNDDDSSEDVL--FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKT 154
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLD 246
+TLA+L+P +++L L +KP + A+++ T T E A Q F +A+ +
Sbjct: 155 GSGKTLAFLIPAIELLYS----LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT 210
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+ GG + + +L+ATP +L H+++ +++ +V+DEAD + + G
Sbjct: 211 CGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIG 270
Query: 307 FGPEISKILNPLKDSALKS 325
F E+ +I+ L + +S
Sbjct: 271 FEDEMKQIIKVLPNENRQS 289
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 193 (73.0 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 143 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 202
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 203 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 260
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 261 GAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 319
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 320 RKIVDQIR 327
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 192 (72.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 53/196 (27%), Positives = 95/196 (48%)
Query: 127 SEREKS-SGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
+ER+ S G + + + FQ+ +++A+ K+G P+ IQ G P L G+ ++
Sbjct: 149 TERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Query: 185 XXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 243
+TLAYLLP + + L + P ++L T E A Q KF
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRL--GQDDGPIVLILAPTRELAVQIQEESRKFGLRSG 266
Query: 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + G + D+ + ++IATP ++ +E ++ + + Y+VLDEAD +
Sbjct: 267 VRSTCIYGGAPKGPQIRDLRRG-VEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML 325
Query: 304 DRGFGPEISKILNPLK 319
D GF P+I KI++ ++
Sbjct: 326 DMGFEPQIRKIVSQIR 341
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 192 (72.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 59/221 (26%), Positives = 111/221 (50%)
Query: 130 EKSSGSNAEVVSS-FQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
+ S+ N + + F +L L ++I+A+ + + +Q IP + + K V +
Sbjct: 2 DSSANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAA 61
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARL 245
+TLA+++PLV++LRR + P KP +++ T E + Q +++A+ F+S A +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSF-PPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANV 120
Query: 246 DSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCD--DIRYVVLDEADTL 302
+S + GG KA ++ + +LI TP L I +R D ++ ++LDEAD L
Sbjct: 121 NSVLLVGGREVKADMKIIEEEGCNVLIGTPGR-LSDIMERMEILDFRNLEILILDEADRL 179
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELS 343
+ GF +++ I++ L K G + T + EL+
Sbjct: 180 LEMGFQRQVNYIISRLP----KQRRTGLFSATQTEGVEELA 216
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 191 (72.3 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F+E + K + K G + +Q IP + G+ ++ +T A+LLP+V
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI-SHCARLDSSMENGGVSSK 257
+ +D A K P+ I++ T E +Q F A KF+ C R + G +
Sbjct: 228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR-PVVIYGGTQTGH 286
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN- 316
++ + +L ATP +L IE +S +++Y+VLDEAD + D GFG ++ K+++
Sbjct: 287 SIRQIMQG-CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISY 345
Query: 317 ---PLKD 320
P KD
Sbjct: 346 PEMPSKD 352
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 194 (73.4 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 59/211 (27%), Positives = 107/211 (50%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E+EK + + F++L + +KA+ + ++IQ +P L G+ ++
Sbjct: 128 EKEKEYKIDYPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKT 187
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
+TL+++LP+++ L R+ + AIVL T E A Q F + K + +
Sbjct: 188 GSGKTLSFILPILETLWRNRW---GRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSA 244
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRG 306
+ GG + + +D NA + +LIATP +LQH+++ C +++ +VLDEAD + D G
Sbjct: 245 GLIIGGRNVQQEKDKINA-MNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLG 303
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTA 337
F SK LN + ++ + QT+L +A
Sbjct: 304 F----SKCLNSIVENLPRER----QTLLFSA 326
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 191 (72.3 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F+E + K + K G + +Q IP + G+ ++ +T A+LLP+V
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI-SHCARLDSSMENGGVSSK 257
+ +D A K P+ I++ T E +Q F A KF+ C R + G +
Sbjct: 228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR-PVVIYGGTQTGH 286
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN- 316
++ + +L ATP +L IE +S +++Y+VLDEAD + D GFG ++ K+++
Sbjct: 287 SIRQIMQG-CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISY 345
Query: 317 ---PLKD 320
P KD
Sbjct: 346 PEMPSKD 352
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 193 (73.0 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 60/204 (29%), Positives = 103/204 (50%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGK-SVVLXXXXXXXRTLAYLLPL 199
+FQ L L +I + + + + IQ IP +L G+ ++V +TLAY +P+
Sbjct: 187 AFQALDLHPHLISTINTVLKMSSLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLAYCIPM 246
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA 258
VQ L+ + + + P A++L T E A Q F + K + + + GG K+
Sbjct: 247 VQSLQAVKPKI-QRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 305
Query: 259 LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ I +LI+TP ++ HI+ +N+ IR+++LDEAD L D GF +I+ ILN
Sbjct: 306 EKARLRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILN- 364
Query: 318 LKDSALKSNGQGFQTILVTAAIAE 341
A+ + Q +L++A + E
Sbjct: 365 ----AVNAERPERQNVLLSATLTE 384
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 193 (73.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 56/194 (28%), Positives = 96/194 (49%)
Query: 131 KSSG-SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
K +G S + V+SF G ++IKAV K P+ IQ +P L+G+ ++
Sbjct: 258 KVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGS 317
Query: 190 XRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
+T A++ P++ + + L P P ++L T E + Q ++ AK L+
Sbjct: 318 GKTAAFIWPMLMHVMDQKQLKPGDG--PIGLILAPTRELSLQIYNEAKKFGKVYNLNVVC 375
Query: 250 ENGGVS----SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
GG S SKALE A I ++ATP ++ ++ + + + ++VLDEAD +F
Sbjct: 376 CYGGGSKWEQSKALEQ--GAEI--IVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHM 431
Query: 306 GFGPEISKILNPLK 319
GF P++ I N ++
Sbjct: 432 GFEPQVRSICNHVR 445
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 189 (71.6 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 51/176 (28%), Positives = 79/176 (44%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ G + + G P+ IQ IPAV+ G+ V+ +T A+ LP++
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L++ E RA+V+ T E A+Q + RL S GGV
Sbjct: 63 LQQGER------GRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A +++A P +L HI + + +VLDEAD +FD GF P+I ++L L
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHL 172
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 189 (71.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 57/196 (29%), Positives = 102/196 (52%)
Query: 128 EREKSSGSNAEVVS------SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV 181
E K++G AE V SF++LG+ + +A +++G VP++IQ IP L G+ +
Sbjct: 6 EPGKAAGLEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDI 65
Query: 182 VLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241
+ +T A+ LP++Q ALL P A+VL T E A Q + +
Sbjct: 66 IGLAETGSGKTGAFALPILQ------ALLDA-PQRLFALVLTPTRELAFQISEQFEALGS 118
Query: 242 CARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEA 299
+ S++ GG+ S + ++ P ++IATP ++ H+E+ + + ++++V+DEA
Sbjct: 119 SIGVHSAVIVGGIDSMSQSLALAKKP-HIIIATPGRLVDHLENTKGFNLRALKFLVMDEA 177
Query: 300 DTLFDRGFGPEISKIL 315
D + + F E+ KIL
Sbjct: 178 DRILNMDFETEVDKIL 193
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 192 (72.6 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 59/211 (27%), Positives = 103/211 (48%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLA 194
N SF +L L +I + + + + +Q IP +L GK ++ +TLA
Sbjct: 91 NVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLA 150
Query: 195 YLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGG 253
Y +PLVQ L+ ++ + + P A+VL T E A Q F + K + + + GG
Sbjct: 151 YGIPLVQSLQGMQSKI-QRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGG 209
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPE 310
K+ + I +LI+TP ++ HI ++ C R ++++DEAD + D GF +
Sbjct: 210 EKRKSEKARLRKGINILISTPGRLVDHI--KSTECIHFRRTQWLIIDEADRILDLGFEKD 267
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
++ ILN AL + + Q +L++A + E
Sbjct: 268 VTVILN-----ALNAERETRQNVLLSATLTE 293
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 192 (72.6 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P++
Sbjct: 248 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 307
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 308 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 365
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 366 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 421
Query: 317 PLK 319
++
Sbjct: 422 HVR 424
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 193 (73.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 54/187 (28%), Positives = 97/187 (51%)
Query: 140 VSSFQELGLKAE-MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
V+ + +LGL + M+ EK+ + IQ +PA+++G+ V+ +T++YLLP
Sbjct: 254 VTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLP 313
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH--MAKFISHCARLDSSMENGGVS- 255
L++ ++ L + P ++L T E A Q H + KF + S GG
Sbjct: 314 LLRQVKAQRPLSKHET-GPMGLILAPTRELALQ-IHEEVTKFTEADTSIRSVCCTGGSEM 371
Query: 256 SKALEDVSNAPIGMLIATPS---EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
K + D+ +++ATP ++L + + +S I +VV+DEAD LFD GF P+I+
Sbjct: 372 KKQITDLKRGT-EIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQIT 430
Query: 313 KILNPLK 319
+I+ ++
Sbjct: 431 QIMKTVR 437
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 191 (72.3 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 50/177 (28%), Positives = 80/177 (45%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL ++ A+E G P+ +Q IPAVL G+ +++ +T + LP+++
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 202 ML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L + P PR +VL T E A Q K + + S+ GGV
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNP 121
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+A P +L +V + +VLDEAD + D GF ++ K+L
Sbjct: 122 QVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL 178
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 192 (72.6 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 53/198 (26%), Positives = 95/198 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F + E IK ++ G+ IQ V GK ++ +T ++ +PL++
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA-L 259
L+R++ + K P+ +VL T E A+Q +AK R L + GG S ++ +
Sbjct: 198 RLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDVTRKLSVACFYGGTSYQSQI 253
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ N I +L+ TP + H++ + +R+VVLDE D + D GF ++ IL+
Sbjct: 254 NHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESY 312
Query: 320 DSALKSNGQGFQTILVTA 337
+ + N Q T+L +A
Sbjct: 313 KTDSEDNPQ---TLLFSA 327
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 192 (72.6 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 47/173 (27%), Positives = 91/173 (52%)
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDE 207
+ A ++KAV+ +G +EIQ I +L GK V+ +TLA+LLP +++L +
Sbjct: 75 VNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHK-- 132
Query: 208 ALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP 266
L K + +++ + T E + Q + + + + L + GG + A +D
Sbjct: 133 --LNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKG 190
Query: 267 IGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+++ N +++ +++DEAD + D GF E+ ++L L
Sbjct: 191 VSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHL 243
Score = 38 (18.4 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK----LRKRKKMKRTGKSLVNLSKVL 50
P EE + E K QTE++ K L K GK NL K +
Sbjct: 34 PMEEEDEEEVEEEQKHQTEESSETKVSEFLTKTTFASLEGKVNANLLKAV 83
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 193 (73.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 193 (73.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 193 (73.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 193 (73.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 193 (73.0 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 193 (73.0 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 193 (73.0 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P++
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 190 (71.9 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 54/188 (28%), Positives = 85/188 (45%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
L+YLLP + + L + P +VL T E A Q +A RL S+ G
Sbjct: 146 LSYLLPAIVHINHQPFL--ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 203
Query: 253 GV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + D+ + IATP ++ +E + Y+VLDEAD + D GF P+I
Sbjct: 204 GAPKGPQIRDLERG-VENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 262
Query: 312 SKILNPLK 319
KI++ ++
Sbjct: 263 RKIVDQIR 270
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 191 (72.3 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 66/268 (24%), Positives = 123/268 (45%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 277 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 336
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + D K + P I++ T E +Q + A+ S + + +
Sbjct: 337 TAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 396
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + I+Y+VLDEAD + D GFG
Sbjct: 397 IYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 455
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDN-----AGKVTAMLL 362
PE+ K+++ + S Q QT++ +A E + L + N G+V
Sbjct: 456 PEMKKLISC---PGMPSKEQR-QTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACR 511
Query: 363 EMDQAEVFDLTESQDALKKKVVEAMDSL 390
++ QA DL Q + ++K++E + ++
Sbjct: 512 DVQQA---DLQVGQYSKREKLLEILRNI 536
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 191 (72.3 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 53/214 (24%), Positives = 102/214 (47%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
+ + + S + + +F + E IK ++ G+ IQ V GK ++
Sbjct: 122 SDNKPEESLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQA 181
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCAR 244
+T ++ +PL++ L+R++ + K P+ +VL T E A+Q +AK F +
Sbjct: 182 RTGTGKTFSFAIPLIERLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITKK 237
Query: 245 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
L + GG S ++ + + N I +L+ TP + H++ + +R+VVLDE D +
Sbjct: 238 LSVACFYGGTSYQSQINHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQML 296
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337
D GF ++ I++ + + N Q T+L +A
Sbjct: 297 DLGFAEQVEDIIHESYKTDSEDNPQ---TLLFSA 327
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 189 (71.6 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 56/181 (30%), Positives = 95/181 (52%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F E+GL ++KA+ +G P+ IQ IP L GK ++ +T AY +PL+Q
Sbjct: 8 FHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQR 67
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVSSKALED 261
+ + + + + RA+VL T+E Q M + ++ +C+R D + + +S KA D
Sbjct: 68 VLTSKQTVREQAV--RAVVLVPTKELGQQVQTMIRQLTAYCSR-DVRVAD--ISGKA--D 120
Query: 262 VS-NAPIGM-----LIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDRGFGPEISKI 314
+S PI M +++TPS + HI +N+ + +V+DEAD LF GF ++ +
Sbjct: 121 LSAQKPILMEKPDIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNL 180
Query: 315 L 315
L
Sbjct: 181 L 181
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 192 (72.6 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P++
Sbjct: 253 SSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 313 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 370
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 371 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 317 PLK 319
++
Sbjct: 427 HVR 429
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 192 (72.6 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 48/183 (26%), Positives = 88/183 (48%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P++
Sbjct: 255 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 314
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----S 256
+ + L P P A+++C T E Q K L S GG S +
Sbjct: 315 IHIMDQKELEPGDG--PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQA 372
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
KAL++ A I ++ TP ++ H++ + + + Y+V DEAD +FD GF ++ I +
Sbjct: 373 KALQE--GAEI--VVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 428
Query: 317 PLK 319
++
Sbjct: 429 HVR 431
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 190 (71.9 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 253 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 312
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + RD K + P I++ T E +Q + A+ S + + +
Sbjct: 313 TAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVV 372
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + ++Y+VLDEAD + D GFG
Sbjct: 373 IYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG 431
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT+L +A E
Sbjct: 432 PEMKKLISC---PGMPSKEQR-QTLLFSATFPE 460
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 190 (71.9 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 59/227 (25%), Positives = 116/227 (51%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
S + S ++ +F+ +GL +++A++KMG PS +Q IP L GK ++
Sbjct: 9 SVEDSVSSDLIDLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKAR 68
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARL 245
+T AY +P++Q + + +K + +A+VL T E +Q H + +C +L
Sbjct: 69 TGSGKTAAYSIPIIQKVLMAKEKSNIKGV--KAVVLVPTRELCEQVKNHFNQVSYYCQQL 126
Query: 246 DSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRYVVLDEAD 300
S ++ G + K L++ + + P ++++TP+ ++QH+E++ + + +V+DEAD
Sbjct: 127 VSVVQLG--NDKTLDEQKGLLRDIP-DVIVSTPTRLVQHLENKTIQLQSTLDILVIDEAD 183
Query: 301 TLFDRGFGPEISKILNPLKDSALKSNGQGF-QTILVTAAIAELSSLM 346
+ + G +I N +K S L Q F + +T + EL L+
Sbjct: 184 LVLNYGHQNDI----NIIK-SFLPKVCQCFLMSATLTKEVEELKKLV 225
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 190 (71.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F + E IK ++ G+ IQ V GK ++ +T ++ +PL++
Sbjct: 140 AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 199
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA-L 259
L+R++ + K P+ +VL T E A+Q +AK R L + GG S ++ +
Sbjct: 200 RLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITRKLSVACFYGGTSYQSQI 255
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ N I +L+ TP + H++ + +R+VVLDE D + D GF ++ I++
Sbjct: 256 NHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 314
Query: 320 DSALKSNGQGFQTILVTA 337
+ + N Q T+L +A
Sbjct: 315 KTDSEDNPQ---TLLFSA 329
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 190 (71.9 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 264 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 323
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + RD K + P I++ T E +Q + A+ S + + +
Sbjct: 324 TAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVV 383
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + ++Y+VLDEAD + D GFG
Sbjct: 384 IYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG 442
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT+L +A E
Sbjct: 443 PEMKKLISC---PGMPSKEQR-QTLLFSATFPE 471
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 190 (71.9 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 264 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 323
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + RD K + P I++ T E +Q + A+ S + + +
Sbjct: 324 TAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVV 383
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + ++Y+VLDEAD + D GFG
Sbjct: 384 IYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG 442
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT+L +A E
Sbjct: 443 PEMKKLISC---PGMPSKEQR-QTLLFSATFPE 471
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 189 (71.6 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 52/213 (24%), Positives = 100/213 (46%)
Query: 133 SGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG+N + +F+E L + + + G P+ +Q G+P + G+ ++ +
Sbjct: 172 SGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGK 231
Query: 192 TLAYLLPLVQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++Q L D + P A+++ T E +Q + A+ S + +
Sbjct: 232 TAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVV 291
Query: 250 ENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GGV++ + ++ +L TP +L I V +R++VLDEAD + D GF
Sbjct: 292 VYGGVNTGYQMREIEKG-CNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFE 350
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
P++ +++ + S + QT++ +A E
Sbjct: 351 PDMRRLVG---SPGMPSKEER-QTLMFSATFPE 379
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 190 (71.9 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F + E IK ++ G+ IQ V GK ++ +T ++ +PL++
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA-L 259
L+R++ + K P+ +VL T E A+Q +AK R L + GG S ++ +
Sbjct: 198 RLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITRKLSVACFYGGTSYQSQI 253
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ N I +L+ TP + H++ + +R+VVLDE D + D GF ++ I++
Sbjct: 254 NHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 312
Query: 320 DSALKSNGQGFQTILVTA 337
+ + N Q T+L +A
Sbjct: 313 KTDSEDNPQ---TLLFSA 327
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 190 (71.9 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 52/198 (26%), Positives = 95/198 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F + E IK ++ G+ IQ V GK ++ +T ++ +PL++
Sbjct: 139 AFSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 198
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA-L 259
L+R++ + K P+ +VL T E A+Q +AK R L + GG S ++ +
Sbjct: 199 RLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITRKLSVACFYGGTSYQSQI 254
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ N I +L+ TP + H++ + +R+VVLDE D + D GF ++ I++
Sbjct: 255 NHIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESY 313
Query: 320 DSALKSNGQGFQTILVTA 337
+ + N Q T+L +A
Sbjct: 314 KTDSEDNPQ---TLLFSA 328
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 190 (71.9 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 51/195 (26%), Positives = 91/195 (46%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E+ + SFQE L +++ + + P+ IQ IP L GK +V
Sbjct: 285 EKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVT 344
Query: 188 XXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
+T A+++P+++ L P K R +L T E A Q +++A ++ +
Sbjct: 345 GSGKTAAFVVPILERL----LFRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITF 400
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRG 306
GG S + E+V ++IATP + H+ + + + D + +VLDEAD + + G
Sbjct: 401 CQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDG 460
Query: 307 FGPEISKILNPLKDS 321
F E+++IL + S
Sbjct: 461 FADELNEILTTIPKS 475
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 186 (70.5 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 54/193 (27%), Positives = 90/193 (46%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
S +GL A+++KAV+ G + IQ IP + G ++ +T A+ LP++
Sbjct: 2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61
Query: 202 MLRR------------DEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLD 246
+ + DE K RA++L T E A+Q K S +
Sbjct: 62 AIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIK 121
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
S + GG + + + +L+ATP +L+H+ RNV ++++VLDEAD + D G
Sbjct: 122 SGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMG 181
Query: 307 FGPEISKILNPLK 319
F +I K+L +K
Sbjct: 182 FLTDIEKLLLAVK 194
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 189 (71.6 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 57/213 (26%), Positives = 100/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 252 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 311
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + RD K + P I++ T E +Q + A+ S + + +
Sbjct: 312 TAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVV 371
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + ++Y+VLDEAD + D GFG
Sbjct: 372 IYGGTQFGHSVRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFG 430
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT+L +A E
Sbjct: 431 PEMKKLISC---PGMPSKEQR-QTLLFSATFPE 459
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 188 (71.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/181 (28%), Positives = 82/181 (45%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F E ++ + K P+ IQ G P L+GK +V +TL+YLLP
Sbjct: 95 IVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPA 154
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKA 258
+ + L P +VL T E A Q +A +R+ S+ GG
Sbjct: 155 IVHINHQPFL--EHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQ 212
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 213 IRDLERG-VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 271
Query: 319 K 319
+
Sbjct: 272 R 272
>UNIPROTKB|A2VD92 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8355
"Xenopus laevis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177
EMBL:BC129617 RefSeq:NP_001091352.1 UniGene:Xl.75260
ProteinModelPortal:A2VD92 IntAct:A2VD92 PRIDE:A2VD92
GeneID:100037192 KEGG:xla:100037192 Xenbase:XB-GENE-969102
Uniprot:A2VD92
Length = 740
Score = 124 (48.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 33/129 (25%), Positives = 66/129 (51%)
Query: 214 PMHPRAIVLCTTEESADQGFHMAK-FISHC--ARLDSSMENGGVSSKALEDVSNAPIGML 270
P P+A+++ + E A+Q + K F + +L + GGV++K + + ++
Sbjct: 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIV 343
Query: 271 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 330
+ TP + I +S +R++VLDEAD L +G+ I++I + + S+G+
Sbjct: 344 VGTPGRIDDLISTGKLSLSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQ--ITSDGKRL 401
Query: 331 QTILVTAAI 339
Q I+ +A +
Sbjct: 402 QVIVCSATL 410
Score = 114 (45.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQML 203
+Q++
Sbjct: 61 IQIV 64
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 193 (73.0 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++ + G+ +++ A++K G P+ IQ IPA++NG+ ++ +T+A+LLP+
Sbjct: 370 IKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPM 429
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG--VSSK 257
+ + AL + P A+++ T E A Q K S L GG +S +
Sbjct: 430 FRHIMDQRAL--EEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQ 487
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPEISKI 314
E A I ++ TP ++ + N ++R YVVLDEAD +FD GF P++ +I
Sbjct: 488 IAELKRGAEI--IVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 545
Query: 315 LNPLK 319
++ ++
Sbjct: 546 VDNVR 550
Score = 42 (19.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 18 AKEQTEQTEAEKLRKRKK 35
+KE+TE E K +K++K
Sbjct: 119 SKERTEGVEVSKEKKKEK 136
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/184 (27%), Positives = 92/184 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKM-GLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
+ SF E+ +++ ++K G+ P+ IQ GIP L+G+ ++ +T+ ++LP
Sbjct: 188 IGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLP 247
Query: 199 LVQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHM------AKFISHCARLDSSMEN 251
LV E LP M+ P +++ + E A Q F + A + + + +
Sbjct: 248 LVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCI 307
Query: 252 GGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV + +DV + I +++ATP + + + ++ + RY+VLDEAD + D GF E
Sbjct: 308 GGVPIGEQAKDVRDG-IHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDE 366
Query: 311 ISKI 314
I I
Sbjct: 367 IKSI 370
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 60/227 (26%), Positives = 116/227 (51%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A+E E+ G++ + F+ L L + +A+ K P+ +Q IP L GK ++
Sbjct: 15 ANEAEEVKGADRD--EDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARA 72
Query: 186 XXXXXRTLAYLLPLVQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHM-AKFISHCA 243
+T AY+LP++Q + + +A+ P MK ++L T E A+Q + F + C
Sbjct: 73 KTGSGKTAAYVLPILQTILQKKAIDPSMKAT--TGLILVPTRELAEQVQKVITTFAAFCG 130
Query: 244 RLDSSMENGGVSSKALEDVSNAPIG----MLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
+ D N ++ K + V A + ++++TP+ V+ ++ +S +++ ++V+DEA
Sbjct: 131 K-DVRSVN--LTQKVSDAVQKAMLADYPDIVVSTPARVIANLGTSALSLENLTHLVIDEA 187
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AELSSL 345
D + G+ +I N L K+ +G QT L++A + AE+ +L
Sbjct: 188 DLVLSYGYEDDI----NALS----KAIPRGVQTFLMSATLTAEVDTL 226
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 188 (71.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F E+ L ++K + + G P+ IQ G P ++G + V +TL Y+LP
Sbjct: 280 IQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPA 339
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKA 258
+ + + L + P A+VL T E A Q +A +F S ++ + G
Sbjct: 340 IVHINNQQPL--QRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQ 397
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ ++IATP ++ + + + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 398 MRDLQRG-CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI 456
Query: 319 K 319
+
Sbjct: 457 R 457
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 187 (70.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 62/207 (29%), Positives = 98/207 (47%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
AE ++F +LGLKA +++A+ +G PS IQ IP +LNG+ V+ +T A+
Sbjct: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVS 255
LPL+Q L D L P+ +VL T E A Q M F H ++ GG
Sbjct: 62 LPLLQNL--DPELKA-----PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR 114
Query: 256 SKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
L + P +++ TP +L H++ + + +VLDEAD + GF ++ I
Sbjct: 115 YDVQLRALRQGP-QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAE 341
+ + + G QT L +A + E
Sbjct: 174 MAQIPE--------GHQTALFSATMPE 192
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 49/192 (25%), Positives = 91/192 (47%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
S + + +SF G +++ + K P+ IQC G+P L+G+ + +
Sbjct: 248 SGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGK 307
Query: 192 TLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
T A++ P++ + + L P + P A+++C T E Q K L S
Sbjct: 308 TAAFIWPILVHIMDQKELEPGEG--PIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVY 365
Query: 252 GGVS----SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
GG S +KAL++ A I ++ TP ++ H++ + S + ++V DEAD +FD GF
Sbjct: 366 GGGSMWEQAKALQE--GAEI--VVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGF 421
Query: 308 GPEISKILNPLK 319
++ I + ++
Sbjct: 422 EYQVRSIASHVR 433
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 188 (71.2 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 46/175 (26%), Positives = 85/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F ++ L ++KA+ MG P+ IQ +P L GK + +T A++LP+++
Sbjct: 202 TFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLE 261
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R +VL T E Q +A+ ++ + + + GG+ K+ E
Sbjct: 262 RL----IYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEA 317
Query: 262 VSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 318 ALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEII 372
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 187 (70.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 56/196 (28%), Positives = 94/196 (47%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E S S + F E G +++ V + G P+ +Q IP +L + ++
Sbjct: 128 EVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGS 187
Query: 190 XRTLAYLLPLVQMLRRD--EALLP------MKPMHPRAIVLCTTEESADQGFHMAKFISH 241
+T A+LLP++Q + + + P + +P A+VL T E A Q A S+
Sbjct: 188 GKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSY 247
Query: 242 CARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
+ + +++ GG + + V+ G +LIATP ++ IE + RY+VLDEA
Sbjct: 248 KSNIQTAILYGGRENYR-DQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 306
Query: 300 DTLFDRGFGPEISKIL 315
D + D GF P+I KI+
Sbjct: 307 DRMLDMGFEPQIRKIV 322
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 188 (71.2 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 52/178 (29%), Positives = 88/178 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F EL L K V ++IQ IP L G+ ++ +TLA+L+PL++
Sbjct: 50 AFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L R++ K A+VL T E A Q F + + I + + GG S + E
Sbjct: 110 KLYREQWTQEAKL---GALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVRE-EA 165
Query: 262 VSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LI TP +LQH++ + D+++ +VLDEAD + D GF ++ ++ L
Sbjct: 166 EALSRMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHL 223
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 189 (71.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SFQ++ L ++KA+ MG P+ IQ IP L GK + +T A+ LP+++
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P+ R +VL T E Q + K ++ + + + GG+ K+ E
Sbjct: 248 RLIYKPRQAPVT----RVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEA 303
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 304 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Score = 41 (19.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 8 EEQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGK 41
EE Y + + + K+++RKK K+ G+
Sbjct: 138 EESETDYSSADENILTKADTLKIKERKKKKKKGQ 171
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 183 (69.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 47/173 (27%), Positives = 81/173 (46%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F+ E+++A+ G + IQ IPA+ G+ V+ +T A+ LP++Q
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
+ + + +K + R ++L T E A Q + S GGV +
Sbjct: 63 MVENPSET-LKS-NTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+++ATP +L+H+ N+S + ++VLDEAD + D GF +I KIL
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKIL 173
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 187 (70.9 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SFQ++ L ++KA+ MG P+ IQ IP L GK + +T A+ LP+++
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P+ R +VL T E Q + + ++ + + + GG+ K+ E
Sbjct: 279 RLIYKPRQAPVT----RVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEA 334
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 335 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 389
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 190 (71.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SFQ++ L ++KA+ MG P+ IQ IP L GK + +T A+ LP+++
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R +VL T E Q + K ++ + + + GG+ K+ E
Sbjct: 248 RL----IYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEA 303
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 304 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Score = 39 (18.8 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 19 KEQTEQTEAEKLRKRKKMKRTGKSLVNLSKV--LYSVKQIN-SSPVIRPLS 66
K T+ + ++ +K+KK + TG + S+ S + +N S P+++ ++
Sbjct: 153 KAATDTLKVKERKKKKKGQETGGFFEDASQYDENLSFQDMNLSRPLLKAIT 203
Score = 37 (18.1 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 19 KEQTEQTEAEKLRKRKKMKRTGKSL 43
K +TE EA+ + +K + G L
Sbjct: 96 KRKTEDKEAKSGKSEEKEAKEGSEL 120
>UNIPROTKB|D6RCM4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HGNC:HGNC:18700 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RCM4 SMR:D6RCM4 Ensembl:ENST00000506511
ArrayExpress:D6RCM4 Bgee:D6RCM4 Uniprot:D6RCM4
Length = 518
Score = 184 (69.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 55/213 (25%), Positives = 99/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 259 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 318
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + D K + P I++ T E +Q + A+ S + + +
Sbjct: 319 TAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 378
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + I+Y+VLDEAD + D GFG
Sbjct: 379 IYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 437
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT++ +A E
Sbjct: 438 PEMKKLISC---PGMPSKEQR-QTLMFSATFPE 466
>UNIPROTKB|Q0IIK5 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0008026 GO:GO:0043330
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
GO:GO:0033677 EMBL:BC122599 IPI:IPI00716534 RefSeq:NP_001068936.1
UniGene:Bt.1784 ProteinModelPortal:Q0IIK5 STRING:Q0IIK5
PRIDE:Q0IIK5 Ensembl:ENSBTAT00000013075 GeneID:510816
KEGG:bta:510816 CTD:1653 HOVERGEN:HBG005462 InParanoid:Q0IIK5
KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95 NextBio:20869630
ArrayExpress:Q0IIK5 Uniprot:Q0IIK5
Length = 740
Score = 121 (47.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 32/130 (24%), Positives = 69/130 (53%)
Query: 214 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 269
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329
++ TP + + ++ +R++VLDEAD L +G+ I++I N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQ--ITSDGKR 400
Query: 330 FQTILVTAAI 339
Q I+ +A +
Sbjct: 401 LQVIVCSATL 410
Score = 114 (45.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQML 203
+Q++
Sbjct: 61 IQIV 64
>UNIPROTKB|F6V659 [details] [associations]
symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 CTD:1653 KO:K13177
OMA:TLNNVKQ Ensembl:ENSCAFT00000005957 EMBL:AAEX03010740
EMBL:AAEX03010739 RefSeq:XP_848865.1 GeneID:475671 KEGG:cfa:475671
Uniprot:F6V659
Length = 740
Score = 121 (47.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 32/130 (24%), Positives = 69/130 (53%)
Query: 214 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 269
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329
++ TP + + ++ +R++VLDEAD L +G+ I++I N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQ--ITSDGKR 400
Query: 330 FQTILVTAAI 339
Q I+ +A +
Sbjct: 401 LQVIVCSATL 410
Score = 114 (45.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQML 203
+Q++
Sbjct: 61 IQIV 64
>UNIPROTKB|Q5XH91 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003712 "transcription cofactor activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
Length = 740
Score = 119 (46.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ AE+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQML 203
+Q++
Sbjct: 61 IQIV 64
Score = 116 (45.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 32/129 (24%), Positives = 66/129 (51%)
Query: 214 PMHPRAIVLCTTEESADQGFHMAK-FISHC--ARLDSSMENGGVSSKALEDVSNAPIGML 270
P P+A+++ + E A+Q + K F + +L + GGV++K + + ++
Sbjct: 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIV 343
Query: 271 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 330
+ TP + I ++ +R++VLDEAD L +G+ I++I + + S+G+
Sbjct: 344 VGTPGRIDDLISTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQ--VTSDGKRL 401
Query: 331 QTILVTAAI 339
Q I+ +A +
Sbjct: 402 QVIVCSATL 410
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 187 (70.9 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 59/216 (27%), Positives = 96/216 (44%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 82 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 141
Query: 187 XXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T +L+P+ + L+ A RA++L T E A Q K + L
Sbjct: 142 TGSGKTACFLIPMFERLKTHSA-----QTGARALILSPTRELALQTMKFTKELGKFTGLR 196
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
+++ GG + + ++IATP ++ + N+ + YV D D LF+ G
Sbjct: 197 TALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYV--DSIDWLFEMG 254
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342
F ++ +I+ L G QT+L +A + +L
Sbjct: 255 FAEQLQEIIGRLPG--------GHQTVLFSATLPKL 282
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 189 (71.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 59/211 (27%), Positives = 100/211 (47%)
Query: 125 IASEREKSSGSNAEVVSS-FQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLN--GKS 180
I E + SNA + F LG+ + ++ +E KM + P+ IQ IP ++ GK+
Sbjct: 126 IHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKN 185
Query: 181 -VVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-F 238
+ +TL+YLLP++ + + + + A+V+ T E A Q +H+
Sbjct: 186 DFFIHAQTGSGKTLSYLLPIISTILNMDTHVD-RTSGAFALVIAPTRELASQIYHVCSTL 244
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI----RYV 294
+S C L + GG K+ + +I TP VL H+++ V + + RY+
Sbjct: 245 VSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYI 304
Query: 295 VLDEADTLFDRGFGPEISKILNPLKDSALKS 325
VLDE D L + GF IS+I+ + D + S
Sbjct: 305 VLDEGDKLMELGFDETISEIIKIVHDIPINS 335
Score = 39 (18.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 1 MLLSPSTEEQFIKYLEGAKEQTEQTEAE-KLRKRKKMKRTGKSL 43
MLL+ +T E K+ + T K R+R KMK GK++
Sbjct: 7 MLLNFTTNEDTAG--SSYKQAAKVTGGRWKDRRRMKMKLEGKTV 48
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 181 (68.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 48/187 (25%), Positives = 86/187 (45%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
G+ E+V +F LGL ++++ + G PS IQ GI +LNG + +T
Sbjct: 16 GNTEEIVDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTA 75
Query: 194 AYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
+++ +Q++ D +A++L T E A Q + + ++ GG
Sbjct: 76 TFVISSLQLINYDYVAC-------QALILAPTRELAQQIQKVVLALGDYLKVKCHACVGG 128
Query: 254 VSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
+ ED+ G M++ TP V I+ R++ D ++ +LDEAD + RGF +I
Sbjct: 129 TVVR--EDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQI 186
Query: 312 SKILNPL 318
++ L
Sbjct: 187 YEVFKKL 193
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 181 (68.8 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 48/187 (25%), Positives = 86/187 (45%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
G+ E+V +F LGL ++++ + G PS IQ GI +LNG + +T
Sbjct: 16 GNTEEIVDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTA 75
Query: 194 AYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
+++ +Q++ D +A++L T E A Q + + ++ GG
Sbjct: 76 TFVISSLQLINYDYVAC-------QALILAPTRELAQQIQKVVLALGDYLKVKCHACVGG 128
Query: 254 VSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
+ ED+ G M++ TP V I+ R++ D ++ +LDEAD + RGF +I
Sbjct: 129 TVVR--EDIDKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQI 186
Query: 312 SKILNPL 318
++ L
Sbjct: 187 YEVFKKL 193
>TAIR|locus:2032338 [details] [associations]
symbol:AT1G71280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0008266
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC016162
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268803 KO:K14809
IPI:IPI00539204 PIR:E96737 RefSeq:NP_177284.1 UniGene:At.70351
ProteinModelPortal:Q9FVV4 SMR:Q9FVV4 PRIDE:Q9FVV4
EnsemblPlants:AT1G71280.1 GeneID:843469 KEGG:ath:AT1G71280
GeneFarm:1442 TAIR:At1g71280 InParanoid:Q9FVV4 OMA:NDASIVC
PhylomeDB:Q9FVV4 ArrayExpress:Q9FVV4 Genevestigator:Q9FVV4
Uniprot:Q9FVV4
Length = 465
Score = 182 (69.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 58/212 (27%), Positives = 104/212 (49%)
Query: 138 EVVSSFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAY 195
E F EL L ++I+A+++ G V + +Q IP + + K VV+ +TLA+
Sbjct: 12 EAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAF 71
Query: 196 LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD-SSMENGGV 254
LLP ++++RR + P KP +++ T E + Q H ++ RLD +
Sbjct: 72 LLPFIEIIRRSNSY-PPKPHQVMGVIISPTRELSAQ-IHK---VARAVRLDFAKCREVEA 126
Query: 255 SSKALEDVSNAPIGMLIATP---SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
LE+ +LI TP S++++ +E + ++ ++LDEAD L D GF ++
Sbjct: 127 DMNTLEEEG---ANLLIGTPGRLSDMMKRMEFLDFR--NLEILILDEADRLLDMGFQKQV 181
Query: 312 SKILNPLKDSALKSNGQGFQTILVTAAIAELS 343
+ I++ L K G + T A+A+L+
Sbjct: 182 NYIISRLP----KQRRTGLFSATQTQAVADLA 209
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 184 (69.8 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 48/193 (24%), Positives = 98/193 (50%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
++SG N V++F E+ L + +++ P+ +Q IP + G+ ++
Sbjct: 135 ETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGS 194
Query: 190 XRTLAYLLPLVQMLRRDEAL-LP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+T A+ P++ + +D+ + P ++ ++P A++L T E A Q A+ S+ +
Sbjct: 195 GKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVK 254
Query: 247 SSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
+ GG ++ + ++ + +L+ATP + +E VS +R++ LDEAD + D
Sbjct: 255 VVVAYGGTPVNQQIRELERG-VDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313
Query: 306 GFGPEISKILNPL 318
GF P+I KI+ +
Sbjct: 314 GFEPQIRKIVQQM 326
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 190 (71.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SFQ++ L ++KA+ MG P+ IQ IP L GK + +T A+ LP+++
Sbjct: 185 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 244
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R +VL T E Q + K ++ + + + GG+ K+ E
Sbjct: 245 RL----IYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEA 300
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 301 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 355
Score = 37 (18.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEK 158
K S + S +E+ KA+ +K EK
Sbjct: 134 KDEDSETDYSSEDEEILTKADTLKVKEK 161
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 184 (69.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 50/181 (27%), Positives = 85/181 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V++F + ++ + + P+ IQ G P L+G+ +V +TLAYLLP
Sbjct: 94 VTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPA 153
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKA 258
+ + L + P +VL T E A Q +A +R+ S+ GG
Sbjct: 154 IVHINHQPYL--ERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQ 211
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ D+ + + IATP ++ +E + Y+VLDEAD + D GF P+I KI++ +
Sbjct: 212 IRDLERG-VEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI 270
Query: 319 K 319
+
Sbjct: 271 R 271
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 180 (68.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 71/263 (26%), Positives = 120/263 (45%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F+ELGL +++ +MGL P+ +Q IP +L G+ + +T A++LP+
Sbjct: 1 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPV 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS--SK 257
+Q+L D P +VL T E A Q + + L + GG+ ++
Sbjct: 61 LQVLSED-------PYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQ 113
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRG---FGPEISK 313
ALE +S P ++IATP + H+ N S ++++VLDEAD L ++G F ++
Sbjct: 114 ALE-LSRKP-HVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEV 171
Query: 314 ILN--PLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD---NAGKVTAMLLEMDQAE 368
IL P + L F L T + EL SL + R A + E+DQ
Sbjct: 172 ILEAVPARRQTLL-----FSATL-TDTLNELKSL--AMNRPFFWEAASEVRTVDELDQRY 223
Query: 369 VFDLTESQDALKKKVVEAMDSLH 391
+ +DA +++ H
Sbjct: 224 LLVPEAVKDAYLVHLIQTFQDEH 246
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 182 (69.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 52/184 (28%), Positives = 98/184 (53%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLA 194
+ E+ +SF+ELG+ + +A +++G P++IQ IP L G+ V+ +T A
Sbjct: 73 TTGEIHTSFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGA 132
Query: 195 YLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+ +P++Q L L + +H +VL T E A Q + + +++ GG+
Sbjct: 133 FAVPVLQSL-----LACAQRLH--TLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGI 185
Query: 255 S--SKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEI 311
S+AL ++ P ++IATP ++ H+E+ + + ++Y+V+DEAD + + F E+
Sbjct: 186 DMMSQALV-LAKKP-HVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEV 243
Query: 312 SKIL 315
KIL
Sbjct: 244 DKIL 247
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 181 (68.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 50/180 (27%), Positives = 93/180 (51%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E +F++LG+ + +A +++G P++IQ IP L G+ ++ +T A+ L
Sbjct: 21 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 80
Query: 198 PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
P++ ALL P A+VL T E A Q + + + S++ GG+ S
Sbjct: 81 PILN------ALLET-PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSM 133
Query: 258 ALE-DVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ ++ P ++IATP ++ H+E+ + + ++Y+V+DEAD + + F E+ KIL
Sbjct: 134 SQSLALAKKP-HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 192
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 184 (69.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 55/213 (25%), Positives = 99/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 259 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 318
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + D K + P I++ T E +Q + A+ S + + +
Sbjct: 319 TAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 378
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + I+Y+VLDEAD + D GFG
Sbjct: 379 IYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 437
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT++ +A E
Sbjct: 438 PEMKKLISC---PGMPSKEQR-QTLMFSATFPE 466
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 181 (68.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 69/267 (25%), Positives = 123/267 (46%)
Query: 140 VSSFQELG-LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
+++F L L + + ++G + +Q +PA+L GK V + +T A+ L
Sbjct: 1 MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ--GF--HMAKFISHCARLDSSMENGGV 254
L+Q + D +L +A+VLC T E ADQ G +A+F+ + L ++ G
Sbjct: 61 LLQQI--DASLF-----QTQALVLCPTRELADQVAGELRRLARFLPNTKIL--TLCGGQP 111
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + +AP +++ATP +L H++ VS D + +V+DEAD + D GF I
Sbjct: 112 FGMQRDSLQHAP-HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI--- 167
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTAMLLEMDQAEVFDLT 373
D ++ QT+L +A E ++++ ++RD + +E+D +
Sbjct: 168 -----DDVIRFAPASRQTLLFSATWPEAIAAISGRVQRD------PLAIEIDSTDALPPI 216
Query: 374 ESQ---DALKKKVVEAMDSLHLSAPGS 397
E Q + K K+ L L P S
Sbjct: 217 EQQFYETSSKGKIPLLQRLLSLHQPSS 243
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 184 (69.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 52/197 (26%), Positives = 103/197 (52%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G + + +S F +L L + + ++ G P+ +Q IPA+ G+ ++
Sbjct: 220 EATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGS 279
Query: 190 XRTLAYLLPLVQMLRRD--EALLPM-------KPMHPRAIVLCTTEESADQGFHMAKFIS 240
+T A+L+PLV + +D +A+ K +P A+VL T E + Q F+ ++ +
Sbjct: 280 GKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFA 339
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
+ + S++ GG + + + +G +LIATP ++ ++ + + RY+VLDE
Sbjct: 340 YRTPITSALLYGGRENYK-DQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDE 398
Query: 299 ADTLFDRGFGPEISKIL 315
AD + D GF P+I +I+
Sbjct: 399 ADRMLDMGFEPQIRQIV 415
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 190 (71.9 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 49/175 (28%), Positives = 84/175 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SFQ++ L ++KA+ MG P+ IQ IP L GK + +T A+ LP+++
Sbjct: 209 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 268
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R +VL T E Q + K ++ + + + GG+ K+ E
Sbjct: 269 RL----IYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEA 324
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A +LIATP ++ H+ + + I ++LDEAD + D F ++ +I+
Sbjct: 325 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 379
Score = 37 (18.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 19 KEQTEQTEAEKLRKRKKMKRTGKSL 43
K +TE EA+ + +K + G L
Sbjct: 119 KRKTEDKEAKSGKSEEKEAKEGSEL 143
Score = 37 (18.1 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKR 38
P E+ Y + + + K+++RKK K+
Sbjct: 157 PEDEDSETDYSSADENILTKADTLKVKERKKKKK 190
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 184 (69.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 55/213 (25%), Positives = 99/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 279 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 338
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + D K + P I++ T E +Q + A+ S + + +
Sbjct: 339 TAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 398
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + I+Y+VLDEAD + D GFG
Sbjct: 399 IYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 457
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT++ +A E
Sbjct: 458 PEMKKLISC---PGMPSKEQR-QTLMFSATFPE 486
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 184 (69.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 55/213 (25%), Positives = 99/213 (46%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 280 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 339
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
T A+LLP++ + D K + P I++ T E +Q + A+ S + + +
Sbjct: 340 TAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVV 399
Query: 250 ENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
GG ++ + +L ATP ++ I + I+Y+VLDEAD + D GFG
Sbjct: 400 IYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFG 458
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
PE+ K+++ + S Q QT++ +A E
Sbjct: 459 PEMKKLISC---PGMPSKEQR-QTLMFSATFPE 487
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 185 (70.2 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 50/180 (27%), Positives = 94/180 (52%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223
P+ IQ I +L G ++ +TL+YL+P+VQ L ++ + + +++
Sbjct: 231 PTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLT-EQRVTRSDGCY--CVIIT 287
Query: 224 TTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 282
T E + Q + + K + + + GG + A + I +L+ATP +L H++
Sbjct: 288 PTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQ 347
Query: 283 D-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
+ ++ D+I++ +LDEAD L D GF +++ I+N L DS ++ Q ILV+A ++E
Sbjct: 348 NTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIIN-LLDSKKRTMKFKRQNILVSATLSE 406
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 181 (68.8 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 64/259 (24%), Positives = 113/259 (43%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F GL +++ +E G P+ IQ IPA L GKS++ +T ++L+P+
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSK 257
+ + P + +P A+VL T E Q AK + +++ GG S
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSG 228
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
L + + ++I TP V+ + + D+I VLDE D + RGF ++ +I
Sbjct: 229 QLYRIQQG-VELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQA 287
Query: 318 LKDSA--LKSNGQGFQTILVTAAIAELSSLMECLERDNAGK-VTAMLLEMD----QAEVF 370
L L S + V ++A+ L+ + K V + + +D + ++F
Sbjct: 288 LSQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLF 347
Query: 371 DLTESQDALKKKVVEAMDS 389
D+ SQ+ K V + S
Sbjct: 348 DILRSQNHFKPPAVVYVSS 366
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 181 (68.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 65/252 (25%), Positives = 117/252 (46%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V S ++G +IK+++ + P+ IQ G P L+GK ++ +T
Sbjct: 105 GENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKT 164
Query: 193 LAYLLP-LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSME 250
LA++LP V +L + P+ +VL T E A+Q KF + +++ ++
Sbjct: 165 LAFILPAFVHILAQPNLKYGDGPI---VLVLAPTRELAEQIRQECIKFSTE-SKIRNTCA 220
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV + +LIA P ++ +E + + Y+VLDEAD + D GF +
Sbjct: 221 YGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQ 280
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAIA-ELSSLME--CLERD---NAGKVTAMLLEM 364
I KI++ ++ QT++ +A E+ +L + C E+ N G +T
Sbjct: 281 IRKIVDQIRPDR--------QTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRS 332
Query: 365 DQAEVFDLTESQ 376
+ E++ L E +
Sbjct: 333 IKQEIYLLEEHE 344
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 181 (68.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 65/252 (25%), Positives = 117/252 (46%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V S ++G +IK+++ + P+ IQ G P L+GK ++ +T
Sbjct: 105 GENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKT 164
Query: 193 LAYLLP-LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSME 250
LA++LP V +L + P+ +VL T E A+Q KF + +++ ++
Sbjct: 165 LAFILPAFVHILAQPNLKYGDGPI---VLVLAPTRELAEQIRQECIKFSTE-SKIRNTCA 220
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV + +LIA P ++ +E + + Y+VLDEAD + D GF +
Sbjct: 221 YGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQ 280
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAIA-ELSSLME--CLERD---NAGKVTAMLLEM 364
I KI++ ++ QT++ +A E+ +L + C E+ N G +T
Sbjct: 281 IRKIVDQIRPDR--------QTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRS 332
Query: 365 DQAEVFDLTESQ 376
+ E++ L E +
Sbjct: 333 IKQEIYLLEEHE 344
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 179 (68.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 47/185 (25%), Positives = 95/185 (51%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++ + G+ + ++ + ++G P+ IQC IPA+++G+ ++ +TLA++LP+
Sbjct: 509 IKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPM 568
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENG-GVSSK 257
+ + D+ + AI++ T E Q G + KF + G G+S +
Sbjct: 569 FRHIL-DQPSMEDGD-GAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQ 626
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPEISKI 314
E A I ++ TP ++ + + ++R YVVLDEAD +FD GF P++ +I
Sbjct: 627 IAELKRGAEI--IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 684
Query: 315 LNPLK 319
++ ++
Sbjct: 685 IDNVR 689
Score = 53 (23.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 2 LLSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKR 38
LLS S E+ ++ ++ +EQ + E E +++R++++R
Sbjct: 168 LLSTSCSEEEVEEID-KEEQQRRLEQEMIKRRERIER 203
Score = 40 (19.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 16 EGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRPL 65
E +E+ ++ E EK R+R K + + S S + ++P+I PL
Sbjct: 122 EREREKEKEREKEKERERDKDRERDRQREKESD---SRRAAAAAPLIIPL 168
>RGD|619903 [details] [associations]
symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box helicase 1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003712
"transcription cofactor activity" evidence=ISO;ISS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISO] [GO:0004518
"nuclease activity" evidence=ISO;ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISO;ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISO;ISS] [GO:0009615 "response to virus" evidence=IEA;ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO;ISS] [GO:0033677 "DNA/RNA
helicase activity" evidence=ISO;ISS] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA;ISO] [GO:0071920 "cleavage body"
evidence=ISO;ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO;ISS] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:619903 GO:GO:0007275
GO:GO:0005524 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0004527 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95
HOGENOM:HOG000251633 EMBL:BC082049 IPI:IPI00555314
RefSeq:NP_445866.1 UniGene:Rn.65536 ProteinModelPortal:Q641Y8
IntAct:Q641Y8 STRING:Q641Y8 PRIDE:Q641Y8 Ensembl:ENSRNOT00000009100
GeneID:84474 KEGG:rno:84474 InParanoid:Q641Y8 NextBio:616970
ArrayExpress:Q641Y8 Genevestigator:Q641Y8
GermOnline:ENSRNOG00000006652 Uniprot:Q641Y8
Length = 740
Score = 118 (46.6 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 31/130 (23%), Positives = 69/130 (53%)
Query: 214 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 269
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--ITSDGKR 400
Query: 330 FQTILVTAAI 339
Q I+ +A +
Sbjct: 401 LQVIVCSATL 410
Score = 114 (45.2 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 20/64 (31%), Positives = 41/64 (64%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQML 203
+Q++
Sbjct: 61 IQIV 64
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 182 (69.1 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 70/263 (26%), Positives = 114/263 (43%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
A + F+ G + + ++K G VP+ IQ IP L G+ ++ +T A+L
Sbjct: 199 ARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFL 258
Query: 197 LP-LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGV 254
LP +++ D+ P A++L T E A Q AK +S R+ + + GG+
Sbjct: 259 LPVIIRAFSEDKT--------PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGL 310
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++IATP +L I+ +VS I+ VV+DEADT+ GF ++ +
Sbjct: 311 PLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDV 370
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAE-LSSLMECLERDNAGKVTA-MLLEMDQAEVFDL 372
L QTILV+A I + + L + L + +T L L
Sbjct: 371 LEHTPGDC--------QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIIL 422
Query: 373 TESQDALKKKVVEAMDSLHLSAP 395
A KKK+ E ++ L P
Sbjct: 423 WVEDPAKKKKLFEILNDQKLFKP 445
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 179 (68.1 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 47/170 (27%), Positives = 83/170 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQM 202
F + L ++++A+EK G + IQ + +P L G+ V +T+A+L
Sbjct: 11 FSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHY 70
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L A+ K PRA+++ T E A Q A+ ++ L + GG K L+
Sbjct: 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLK- 129
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
V + + +LI T ++ + + +++ I+ VVLDEAD ++D GF +I
Sbjct: 130 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDI 179
WARNING: HSPs involving 481 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.349 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 397 361 0.00082 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 731
No. of states in DFA: 570 (61 KB)
Total size of DFA: 179 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.35u 0.22s 29.57t Elapsed: 00:00:01
Total cpu time: 29.39u 0.22s 29.61t Elapsed: 00:00:01
Start: Thu May 9 23:16:43 2013 End: Thu May 9 23:16:44 2013
WARNINGS ISSUED: 2