Query 015946
Match_columns 397
No_of_seqs 326 out of 2181
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 8.3E-43 1.8E-47 347.2 20.8 204 142-353 92-296 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 1.2E-42 2.6E-47 327.6 14.8 192 136-342 56-248 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 3.3E-42 7E-47 333.7 14.1 196 140-347 180-377 (691)
4 COG0513 SrmB Superfamily II DN 100.0 1.4E-39 3.1E-44 333.9 24.7 200 141-353 29-230 (513)
5 KOG0343 RNA Helicase [RNA proc 100.0 2.9E-39 6.4E-44 315.6 15.8 213 129-353 57-271 (758)
6 KOG0339 ATP-dependent RNA heli 100.0 1.7E-38 3.6E-43 307.6 19.6 246 133-388 215-463 (731)
7 PTZ00110 helicase; Provisional 100.0 6.3E-38 1.4E-42 324.4 25.0 209 134-352 123-332 (545)
8 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-37 3.3E-42 320.3 24.7 209 135-352 115-324 (518)
9 KOG0347 RNA helicase [RNA proc 100.0 1.8E-38 3.9E-43 310.0 15.9 206 134-342 174-389 (731)
10 PRK04837 ATP-dependent RNA hel 100.0 4E-37 8.7E-42 310.4 24.6 205 140-350 7-212 (423)
11 KOG0348 ATP-dependent RNA heli 100.0 8.2E-38 1.8E-42 304.6 16.4 210 137-347 132-350 (708)
12 KOG0342 ATP-dependent RNA heli 100.0 1.4E-37 3E-42 301.1 15.8 203 135-348 76-281 (543)
13 KOG0345 ATP-dependent RNA heli 100.0 8.1E-37 1.8E-41 294.1 20.5 203 141-353 4-213 (567)
14 PRK11776 ATP-dependent RNA hel 100.0 1.8E-36 3.8E-41 308.9 24.2 199 140-353 3-203 (460)
15 PRK04537 ATP-dependent RNA hel 100.0 2.5E-36 5.5E-41 313.7 25.1 205 141-351 9-215 (572)
16 PRK10590 ATP-dependent RNA hel 100.0 3.1E-36 6.7E-41 306.5 24.9 203 142-353 2-205 (456)
17 KOG0328 Predicted ATP-dependen 100.0 1.1E-37 2.4E-42 283.2 11.8 204 135-353 21-225 (400)
18 PRK11634 ATP-dependent RNA hel 100.0 3.8E-36 8.3E-41 314.4 25.1 199 140-353 5-205 (629)
19 KOG0333 U5 snRNP-like RNA heli 100.0 5.2E-37 1.1E-41 298.6 16.9 253 135-390 239-515 (673)
20 KOG0346 RNA helicase [RNA proc 100.0 3E-37 6.4E-42 294.9 14.7 202 141-351 19-223 (569)
21 KOG0335 ATP-dependent RNA heli 100.0 4.7E-37 1E-41 301.5 14.5 249 135-390 68-326 (482)
22 KOG0340 ATP-dependent RNA heli 100.0 6.5E-37 1.4E-41 285.9 14.1 189 139-342 5-197 (442)
23 KOG0336 ATP-dependent RNA heli 100.0 1.1E-36 2.3E-41 288.6 14.6 240 136-388 214-460 (629)
24 PRK11192 ATP-dependent RNA hel 100.0 3.4E-35 7.3E-40 297.4 25.6 201 142-353 2-204 (434)
25 KOG0341 DEAD-box protein abstr 100.0 2.5E-37 5.4E-42 291.2 7.2 250 133-396 162-423 (610)
26 KOG0326 ATP-dependent RNA heli 100.0 3.5E-37 7.6E-42 284.1 6.1 219 141-374 85-314 (459)
27 PRK01297 ATP-dependent RNA hel 100.0 5E-34 1.1E-38 291.9 27.0 209 138-352 84-294 (475)
28 KOG0334 RNA helicase [RNA proc 100.0 4.3E-35 9.2E-40 305.8 15.2 250 134-393 358-613 (997)
29 PTZ00424 helicase 45; Provisio 100.0 1.8E-32 4E-37 274.5 23.5 198 139-351 26-224 (401)
30 cd00268 DEADc DEAD-box helicas 100.0 3E-32 6.6E-37 247.7 21.9 196 143-351 1-197 (203)
31 KOG0337 ATP-dependent RNA heli 100.0 2E-33 4.2E-38 267.6 12.5 195 140-348 20-215 (529)
32 KOG0327 Translation initiation 100.0 2.9E-33 6.2E-38 264.7 10.8 226 135-375 20-258 (397)
33 TIGR03817 DECH_helic helicase/ 100.0 2.3E-31 4.9E-36 283.5 24.7 195 147-353 20-218 (742)
34 KOG0329 ATP-dependent RNA heli 100.0 9.7E-33 2.1E-37 247.8 8.8 234 140-390 41-281 (387)
35 KOG4284 DEAD box protein [Tran 100.0 9.7E-32 2.1E-36 266.8 13.4 201 137-353 21-224 (980)
36 PRK02362 ski2-like helicase; P 100.0 7.6E-31 1.7E-35 281.2 20.3 192 142-352 2-194 (737)
37 PRK00254 ski2-like helicase; P 100.0 5.8E-30 1.2E-34 273.8 20.8 190 142-352 2-192 (720)
38 COG1201 Lhr Lhr-like helicases 100.0 3.5E-29 7.6E-34 262.4 21.5 198 148-353 8-207 (814)
39 KOG0332 ATP-dependent RNA heli 100.0 4.8E-30 1E-34 241.3 11.8 239 132-388 81-326 (477)
40 KOG0350 DEAD-box ATP-dependent 100.0 2.7E-29 5.8E-34 243.7 13.3 186 128-319 114-324 (620)
41 PRK13767 ATP-dependent helicas 100.0 2.2E-28 4.7E-33 265.3 20.9 199 148-352 18-230 (876)
42 PRK01172 ski2-like helicase; P 100.0 2.3E-28 4.9E-33 260.1 20.0 191 142-352 2-192 (674)
43 PF00270 DEAD: DEAD/DEAH box h 100.0 4.4E-28 9.5E-33 213.3 18.4 162 165-340 1-163 (169)
44 COG1205 Distinct helicase fami 99.9 6.6E-26 1.4E-30 243.0 23.9 197 149-356 56-259 (851)
45 PLN03137 ATP-dependent DNA hel 99.9 2.2E-25 4.7E-30 238.6 22.1 189 142-353 436-642 (1195)
46 KOG0344 ATP-dependent RNA heli 99.9 2.2E-26 4.7E-31 228.1 12.7 244 136-390 127-385 (593)
47 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.1E-25 6.7E-30 234.0 21.7 176 159-352 12-229 (844)
48 PRK09401 reverse gyrase; Revie 99.9 5.5E-25 1.2E-29 242.6 23.2 179 151-342 68-281 (1176)
49 TIGR00614 recQ_fam ATP-depende 99.9 5.8E-25 1.2E-29 224.6 19.9 171 158-351 6-186 (470)
50 COG1204 Superfamily II helicas 99.9 2.1E-25 4.5E-30 236.3 16.0 190 147-354 15-205 (766)
51 TIGR01389 recQ ATP-dependent D 99.9 6E-24 1.3E-28 223.0 20.9 177 154-353 3-188 (591)
52 KOG0952 DNA/RNA helicase MER3/ 99.9 1.7E-24 3.7E-29 225.3 14.0 194 157-356 104-302 (1230)
53 PRK14701 reverse gyrase; Provi 99.9 2.2E-23 4.7E-28 234.7 23.1 186 150-349 66-289 (1638)
54 TIGR01054 rgy reverse gyrase. 99.9 2.8E-23 6.1E-28 229.3 22.2 155 150-317 65-238 (1171)
55 COG1202 Superfamily II helicas 99.9 8.6E-24 1.9E-28 208.5 16.0 199 140-353 193-396 (830)
56 PRK11057 ATP-dependent DNA hel 99.9 1.7E-23 3.7E-28 219.6 19.3 180 148-350 9-197 (607)
57 PRK09751 putative ATP-dependen 99.9 1.9E-23 4.1E-28 231.8 16.2 166 183-352 1-182 (1490)
58 TIGR00580 mfd transcription-re 99.9 5.2E-22 1.1E-26 214.5 22.7 166 148-342 436-612 (926)
59 PRK10917 ATP-dependent DNA hel 99.9 7E-22 1.5E-26 209.8 22.1 164 150-342 248-422 (681)
60 PRK12899 secA preprotein trans 99.9 2.4E-22 5.2E-27 211.6 15.7 149 143-303 64-228 (970)
61 PRK10689 transcription-repair 99.9 1.5E-21 3.3E-26 215.0 22.0 164 150-342 588-761 (1147)
62 TIGR00643 recG ATP-dependent D 99.9 3E-21 6.4E-26 203.6 21.8 166 151-342 224-399 (630)
63 KOG0349 Putative DEAD-box RNA 99.9 8E-22 1.7E-26 188.9 7.7 134 217-352 287-425 (725)
64 smart00487 DEXDc DEAD-like hel 99.8 1E-19 2.2E-24 162.3 19.2 169 158-342 3-173 (201)
65 COG4581 Superfamily II RNA hel 99.8 8.7E-20 1.9E-24 194.6 17.1 175 153-353 110-284 (1041)
66 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.1E-19 4.5E-24 192.5 19.4 158 167-350 6-166 (819)
67 PHA02558 uvsW UvsW helicase; P 99.8 1.7E-19 3.6E-24 185.7 16.6 151 161-342 112-262 (501)
68 PRK11664 ATP-dependent RNA hel 99.8 2.6E-19 5.7E-24 192.0 18.2 158 167-350 9-169 (812)
69 PHA02653 RNA helicase NPH-II; 99.8 4.5E-19 9.8E-24 185.9 17.7 163 166-349 167-342 (675)
70 COG0514 RecQ Superfamily II DN 99.8 2.3E-19 5E-24 182.7 14.2 179 153-354 6-193 (590)
71 TIGR03158 cas3_cyano CRISPR-as 99.8 5.6E-18 1.2E-22 167.2 20.2 155 167-342 1-194 (357)
72 KOG0951 RNA helicase BRR2, DEA 99.8 1.4E-18 3E-23 183.7 15.1 199 147-353 295-498 (1674)
73 COG1111 MPH1 ERCC4-like helica 99.8 8.9E-18 1.9E-22 164.9 18.5 171 162-351 14-188 (542)
74 PRK13766 Hef nuclease; Provisi 99.8 1.1E-17 2.4E-22 181.1 21.1 163 161-342 13-175 (773)
75 TIGR01587 cas3_core CRISPR-ass 99.8 2.6E-18 5.5E-23 169.8 12.2 144 180-342 1-168 (358)
76 PRK05580 primosome assembly pr 99.8 3E-17 6.4E-22 174.1 20.3 152 163-340 144-305 (679)
77 KOG0947 Cytoplasmic exosomal R 99.8 3.4E-18 7.4E-23 177.0 12.0 166 157-352 292-457 (1248)
78 TIGR00963 secA preprotein tran 99.7 1.1E-17 2.3E-22 174.6 13.1 131 159-304 53-190 (745)
79 PRK09200 preprotein translocas 99.7 2.1E-17 4.6E-22 174.7 15.0 131 159-303 75-212 (790)
80 cd00046 DEXDc DEAD-like helica 99.7 9E-17 2E-21 135.0 15.9 144 179-339 1-144 (144)
81 KOG0354 DEAD-box like helicase 99.7 3.9E-17 8.4E-22 168.6 15.6 164 160-342 59-224 (746)
82 PRK12898 secA preprotein trans 99.7 6.2E-17 1.3E-21 167.9 14.2 131 158-303 99-255 (656)
83 KOG0351 ATP-dependent DNA heli 99.7 5.4E-17 1.2E-21 174.1 13.3 221 151-396 251-488 (941)
84 KOG0948 Nuclear exosomal RNA h 99.7 2.1E-17 4.6E-22 167.6 9.3 199 163-390 129-340 (1041)
85 TIGR03714 secA2 accessory Sec 99.7 7.7E-17 1.7E-21 169.1 13.8 132 159-303 67-208 (762)
86 PRK13104 secA preprotein trans 99.7 9.3E-17 2E-21 169.8 13.9 130 159-303 79-215 (896)
87 KOG0352 ATP-dependent DNA heli 99.7 1E-16 2.2E-21 154.0 12.7 180 151-353 6-202 (641)
88 KOG0353 ATP-dependent DNA heli 99.7 8.4E-16 1.8E-20 145.7 17.4 184 136-342 66-263 (695)
89 PRK11131 ATP-dependent RNA hel 99.7 4.9E-16 1.1E-20 170.6 17.2 171 167-366 78-254 (1294)
90 KOG0950 DNA polymerase theta/e 99.6 4.1E-15 8.9E-20 155.2 13.2 190 147-352 206-400 (1008)
91 PRK12904 preprotein translocas 99.6 6.2E-15 1.3E-19 155.9 13.1 130 159-303 78-214 (830)
92 PF04851 ResIII: Type III rest 99.6 2.1E-14 4.5E-19 127.4 13.2 151 163-340 3-183 (184)
93 TIGR01967 DEAH_box_HrpA ATP-de 99.6 5.8E-14 1.3E-18 154.9 17.4 171 170-366 74-247 (1283)
94 PRK09694 helicase Cas3; Provis 99.6 4.1E-14 8.8E-19 152.3 15.8 172 162-349 285-492 (878)
95 TIGR00595 priA primosomal prot 99.6 3.9E-14 8.4E-19 145.5 14.2 133 182-340 1-140 (505)
96 COG1200 RecG RecG-like helicas 99.5 1.2E-12 2.5E-17 134.0 19.6 174 147-349 246-431 (677)
97 PRK13107 preprotein translocas 99.5 6.4E-14 1.4E-18 148.2 10.8 131 159-304 79-216 (908)
98 KOG0949 Predicted helicase, DE 99.5 1.1E-13 2.4E-18 144.2 12.0 168 163-350 511-682 (1330)
99 COG1061 SSL2 DNA or RNA helica 99.5 2.5E-13 5.4E-18 137.7 13.9 146 163-342 36-186 (442)
100 TIGR00603 rad25 DNA repair hel 99.5 2.5E-13 5.5E-18 142.7 14.0 149 163-342 255-414 (732)
101 PRK11448 hsdR type I restricti 99.4 1.8E-12 3.9E-17 143.3 17.1 159 163-341 413-596 (1123)
102 TIGR01407 dinG_rel DnaQ family 99.4 1.4E-12 3.1E-17 142.2 15.4 145 149-304 232-454 (850)
103 COG1110 Reverse gyrase [DNA re 99.4 1.5E-11 3.3E-16 129.6 21.0 196 152-360 71-310 (1187)
104 TIGR03117 cas_csf4 CRISPR-asso 99.4 5.3E-12 1.1E-16 131.5 14.4 61 172-240 10-70 (636)
105 PRK07246 bifunctional ATP-depe 99.4 7E-12 1.5E-16 135.6 14.9 135 157-304 240-450 (820)
106 COG1643 HrpA HrpA-like helicas 99.3 1.9E-11 4.2E-16 130.2 15.2 208 166-397 53-261 (845)
107 TIGR00348 hsdR type I site-spe 99.3 3.8E-11 8.2E-16 127.6 15.8 151 164-341 239-404 (667)
108 COG1197 Mfd Transcription-repa 99.3 2.6E-10 5.7E-15 123.0 20.9 165 149-342 580-755 (1139)
109 PRK13103 secA preprotein trans 99.2 2E-10 4.3E-15 122.1 12.5 130 159-303 79-215 (913)
110 KOG0920 ATP-dependent RNA heli 99.2 6.5E-10 1.4E-14 118.6 15.6 182 163-366 173-355 (924)
111 COG1198 PriA Primosomal protei 99.2 1.1E-09 2.3E-14 115.4 17.1 150 163-341 198-361 (730)
112 smart00489 DEXDc3 DEAD-like he 99.1 6.2E-10 1.4E-14 106.8 14.0 73 163-239 8-84 (289)
113 smart00488 DEXDc2 DEAD-like he 99.1 6.2E-10 1.4E-14 106.8 14.0 73 163-239 8-84 (289)
114 PRK08074 bifunctional ATP-depe 99.1 5.5E-10 1.2E-14 122.9 14.9 65 160-234 255-323 (928)
115 PF07652 Flavi_DEAD: Flaviviru 99.1 8.6E-10 1.9E-14 93.2 11.4 137 177-342 3-139 (148)
116 COG1203 CRISPR-associated heli 99.1 5.9E-10 1.3E-14 119.8 13.1 167 163-342 195-383 (733)
117 PRK12326 preprotein translocas 99.1 7.2E-10 1.6E-14 115.4 12.7 130 159-303 75-211 (764)
118 PRK12906 secA preprotein trans 99.1 7.2E-10 1.6E-14 117.4 12.4 130 159-303 77-213 (796)
119 PF07517 SecA_DEAD: SecA DEAD- 99.0 4.8E-09 1E-13 98.7 14.2 131 158-303 73-210 (266)
120 KOG0922 DEAH-box RNA helicase 99.0 6.7E-09 1.5E-13 106.0 16.0 177 165-366 53-231 (674)
121 PF00176 SNF2_N: SNF2 family N 99.0 3.6E-09 7.7E-14 101.3 13.6 146 178-342 25-175 (299)
122 PRK12902 secA preprotein trans 99.0 5E-09 1.1E-13 111.1 13.6 130 159-303 82-218 (939)
123 CHL00122 secA preprotein trans 99.0 2.8E-09 6.1E-14 113.0 11.7 131 158-303 72-209 (870)
124 COG4096 HsdR Type I site-speci 99.0 2.5E-09 5.4E-14 111.5 11.0 149 163-342 165-323 (875)
125 COG4098 comFA Superfamily II D 99.0 1.3E-08 2.8E-13 96.4 13.6 146 163-342 97-246 (441)
126 PRK11747 dinG ATP-dependent DN 98.9 2.6E-08 5.6E-13 106.6 16.2 64 160-233 23-95 (697)
127 KOG0951 RNA helicase BRR2, DEA 98.9 7.4E-10 1.6E-14 118.7 3.0 156 163-346 1143-1306(1674)
128 PLN03142 Probable chromatin-re 98.9 8.2E-08 1.8E-12 105.2 18.4 157 163-342 169-332 (1033)
129 KOG0925 mRNA splicing factor A 98.8 2E-07 4.4E-12 92.0 15.3 195 140-359 24-220 (699)
130 KOG0952 DNA/RNA helicase MER3/ 98.7 2.7E-09 5.9E-14 113.0 1.7 179 163-354 927-1108(1230)
131 KOG0924 mRNA splicing factor A 98.7 1.7E-07 3.6E-12 95.7 14.1 199 160-385 353-552 (1042)
132 PRK04914 ATP-dependent helicas 98.7 1.9E-07 4E-12 102.0 15.0 161 163-342 152-318 (956)
133 COG1199 DinG Rad3-related DNA 98.7 9E-08 1.9E-12 102.2 12.5 72 156-236 8-83 (654)
134 KOG2340 Uncharacterized conser 98.7 1.3E-07 2.7E-12 94.2 12.1 191 162-353 215-494 (698)
135 PRK12903 secA preprotein trans 98.6 3.3E-07 7.2E-12 97.2 12.9 130 159-303 75-211 (925)
136 PRK15483 type III restriction- 98.6 4.2E-07 9.2E-12 98.2 13.8 143 179-341 60-240 (986)
137 KOG0926 DEAH-box RNA helicase 98.6 3.1E-06 6.6E-11 88.1 19.0 158 169-342 262-427 (1172)
138 PRK14873 primosome assembly pr 98.6 3.5E-07 7.7E-12 96.7 12.5 133 185-342 167-306 (665)
139 TIGR02562 cas3_yersinia CRISPR 98.5 7.8E-07 1.7E-11 96.1 12.5 188 163-366 408-673 (1110)
140 KOG0923 mRNA splicing factor A 98.5 1.7E-06 3.7E-11 88.3 12.4 169 163-354 265-434 (902)
141 PF13604 AAA_30: AAA domain; P 98.4 1.9E-06 4.1E-11 78.0 10.7 124 163-338 1-130 (196)
142 KOG1123 RNA polymerase II tran 98.4 2.6E-07 5.6E-12 91.5 4.6 149 163-342 302-461 (776)
143 KOG0385 Chromatin remodeling c 98.4 6.2E-06 1.3E-10 85.6 14.2 155 163-340 167-328 (971)
144 PF13086 AAA_11: AAA domain; P 98.4 1.4E-06 3E-11 79.9 8.9 74 163-238 1-75 (236)
145 COG0610 Type I site-specific r 98.4 4.5E-06 9.7E-11 92.1 13.7 140 179-342 274-416 (962)
146 PRK12900 secA preprotein trans 98.3 1.6E-06 3.4E-11 93.4 8.9 127 163-303 138-271 (1025)
147 PF02562 PhoH: PhoH-like prote 98.2 6.3E-06 1.4E-10 74.7 9.5 146 162-338 3-155 (205)
148 KOG4439 RNA polymerase II tran 98.2 5.5E-06 1.2E-10 85.2 9.1 178 163-353 325-520 (901)
149 PRK12901 secA preprotein trans 98.2 4.3E-06 9.3E-11 90.2 8.6 127 163-303 169-303 (1112)
150 COG4889 Predicted helicase [Ge 98.2 6.2E-06 1.3E-10 86.6 9.4 149 141-303 140-317 (1518)
151 KOG0387 Transcription-coupled 98.1 2.6E-05 5.7E-10 81.4 12.7 176 162-360 204-398 (923)
152 KOG0390 DNA repair protein, SN 98.1 9.7E-05 2.1E-09 78.4 16.7 173 163-353 238-430 (776)
153 KOG4150 Predicted ATP-dependen 98.1 4.5E-06 9.8E-11 84.0 6.1 190 154-352 277-474 (1034)
154 PF02399 Herpes_ori_bp: Origin 98.1 1.4E-05 3.1E-10 84.5 9.9 152 179-353 50-205 (824)
155 PF13872 AAA_34: P-loop contai 98.1 9.1E-05 2E-09 70.4 14.4 168 144-342 24-223 (303)
156 PRK10536 hypothetical protein; 98.0 0.00011 2.4E-09 68.7 13.8 145 159-337 55-211 (262)
157 PF09848 DUF2075: Uncharacteri 98.0 3.7E-05 8.1E-10 76.0 10.1 108 180-317 3-117 (352)
158 KOG1802 RNA helicase nonsense 97.9 5.4E-05 1.2E-09 77.7 10.4 76 155-239 402-477 (935)
159 TIGR00604 rad3 DNA repair heli 97.9 4.3E-05 9.4E-10 82.3 9.8 74 160-240 7-84 (705)
160 KOG1002 Nucleotide excision re 97.9 8E-05 1.7E-09 74.1 10.5 165 163-353 184-373 (791)
161 PRK10875 recD exonuclease V su 97.9 0.00017 3.6E-09 76.0 13.1 140 165-336 154-299 (615)
162 PF14617 CMS1: U3-containing 9 97.9 4.5E-05 9.8E-10 71.2 7.9 87 213-300 123-211 (252)
163 TIGR01448 recD_rel helicase, p 97.9 0.00026 5.6E-09 76.3 14.7 66 158-232 319-384 (720)
164 PRK13889 conjugal transfer rel 97.9 0.00037 8E-09 76.8 15.9 128 157-337 341-469 (988)
165 TIGR01447 recD exodeoxyribonuc 97.8 0.00034 7.5E-09 73.4 14.7 141 165-336 147-293 (586)
166 PF06862 DUF1253: Protein of u 97.8 0.00012 2.5E-09 73.7 9.8 101 266-367 131-266 (442)
167 TIGR02768 TraA_Ti Ti-type conj 97.8 0.0008 1.7E-08 72.8 16.8 136 148-336 338-474 (744)
168 PF12340 DUF3638: Protein of u 97.8 0.00059 1.3E-08 62.7 13.0 151 142-304 4-186 (229)
169 TIGR00376 DNA helicase, putati 97.7 0.00035 7.6E-09 74.2 13.1 66 163-238 157-223 (637)
170 KOG0921 Dosage compensation co 97.7 0.00023 5.1E-09 75.3 11.2 160 170-350 385-545 (1282)
171 PF13245 AAA_19: Part of AAA d 97.6 0.00031 6.7E-09 53.4 7.7 60 171-236 2-62 (76)
172 KOG1803 DNA helicase [Replicat 97.6 0.00029 6.4E-09 71.9 9.7 63 163-235 185-248 (649)
173 KOG0389 SNF2 family DNA-depend 97.6 0.0004 8.6E-09 72.8 10.6 166 163-350 399-575 (941)
174 KOG1000 Chromatin remodeling p 97.6 0.00066 1.4E-08 67.9 11.4 153 161-340 196-349 (689)
175 PRK13826 Dtr system oriT relax 97.6 0.0021 4.6E-08 71.4 16.5 139 147-338 366-505 (1102)
176 KOG0392 SNF2 family DNA-depend 97.6 0.001 2.2E-08 72.7 13.3 175 163-355 975-1159(1549)
177 KOG0384 Chromodomain-helicase 97.6 0.00034 7.3E-09 76.4 9.8 163 162-351 369-549 (1373)
178 KOG0391 SNF2 family DNA-depend 97.5 0.0016 3.4E-08 70.9 14.2 154 164-340 616-776 (1958)
179 COG3587 Restriction endonuclea 97.5 0.00054 1.2E-08 72.5 10.1 141 180-342 76-245 (985)
180 PF00580 UvrD-helicase: UvrD/R 97.5 0.00042 9.2E-09 66.5 8.7 70 164-241 1-70 (315)
181 KOG1132 Helicase of the DEAD s 97.5 0.00064 1.4E-08 72.1 10.4 77 163-239 21-133 (945)
182 PRK12723 flagellar biosynthesi 97.4 0.0047 1E-07 61.6 15.6 132 178-349 174-309 (388)
183 PF13401 AAA_22: AAA domain; P 97.4 0.00047 1E-08 57.4 6.7 23 177-199 3-25 (131)
184 cd00009 AAA The AAA+ (ATPases 97.3 0.0031 6.7E-08 52.5 11.3 18 178-195 19-36 (151)
185 COG0653 SecA Preprotein transl 97.3 0.001 2.2E-08 71.1 9.4 130 159-303 77-213 (822)
186 COG1875 NYN ribonuclease and A 97.2 0.0023 5E-08 62.1 9.7 141 159-336 224-385 (436)
187 PRK11889 flhF flagellar biosyn 97.2 0.011 2.4E-07 58.8 14.3 130 179-351 242-376 (436)
188 PRK04296 thymidine kinase; Pro 97.2 0.0031 6.7E-08 56.7 9.9 99 178-319 2-103 (190)
189 PF05970 PIF1: PIF1-like helic 97.2 0.0021 4.6E-08 63.8 9.6 123 163-320 1-131 (364)
190 PRK08181 transposase; Validate 97.1 0.011 2.5E-07 56.0 13.3 47 175-232 103-149 (269)
191 PHA02533 17 large terminase pr 97.1 0.0091 2E-07 62.1 13.3 151 163-340 59-211 (534)
192 smart00382 AAA ATPases associa 97.0 0.0027 5.8E-08 52.3 7.0 42 178-229 2-43 (148)
193 PF03354 Terminase_1: Phage Te 96.9 0.0044 9.5E-08 63.8 9.4 149 166-336 1-160 (477)
194 PF05127 Helicase_RecD: Helica 96.9 0.00085 1.8E-08 59.4 3.5 126 182-342 1-126 (177)
195 KOG1805 DNA replication helica 96.9 0.0051 1.1E-07 66.1 9.8 129 161-303 667-809 (1100)
196 PRK06526 transposase; Provisio 96.9 0.0096 2.1E-07 56.1 10.8 23 175-197 95-117 (254)
197 cd01122 GP4d_helicase GP4d_hel 96.9 0.0068 1.5E-07 57.4 9.8 173 151-337 3-189 (271)
198 PF00308 Bac_DnaA: Bacterial d 96.9 0.035 7.6E-07 51.1 14.1 47 289-342 96-143 (219)
199 PRK05703 flhF flagellar biosyn 96.8 0.018 4E-07 58.3 13.1 24 178-201 221-244 (424)
200 PRK06893 DNA replication initi 96.8 0.0073 1.6E-07 55.9 9.2 47 289-342 90-137 (229)
201 PHA03333 putative ATPase subun 96.8 0.07 1.5E-06 56.3 17.1 150 175-351 184-346 (752)
202 cd01120 RecA-like_NTPases RecA 96.8 0.011 2.5E-07 50.4 9.9 39 181-229 2-40 (165)
203 PRK14722 flhF flagellar biosyn 96.7 0.0063 1.4E-07 60.3 8.7 63 141-203 81-162 (374)
204 PRK14974 cell division protein 96.7 0.028 6E-07 55.1 12.9 130 179-350 141-276 (336)
205 KOG0989 Replication factor C, 96.7 0.0049 1.1E-07 58.6 7.3 49 285-342 124-172 (346)
206 KOG0953 Mitochondrial RNA heli 96.7 0.0023 5E-08 64.9 5.2 107 179-313 192-298 (700)
207 PRK14712 conjugal transfer nic 96.7 0.019 4.1E-07 66.2 12.9 62 163-232 835-900 (1623)
208 PRK07952 DNA replication prote 96.7 0.044 9.6E-07 51.3 13.3 25 179-204 100-124 (244)
209 COG2805 PilT Tfp pilus assembl 96.7 0.0029 6.2E-08 60.0 5.3 50 137-206 102-152 (353)
210 PRK06995 flhF flagellar biosyn 96.6 0.049 1.1E-06 55.9 14.2 91 178-277 256-346 (484)
211 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.023 5E-07 52.0 11.0 21 177-197 37-57 (226)
212 PRK14723 flhF flagellar biosyn 96.6 0.024 5.3E-07 60.9 12.4 25 178-202 185-209 (767)
213 PRK11331 5-methylcytosine-spec 96.6 0.0076 1.7E-07 60.8 8.1 33 164-196 180-212 (459)
214 COG1444 Predicted P-loop ATPas 96.5 0.073 1.6E-06 56.9 15.4 151 156-342 207-359 (758)
215 PRK08727 hypothetical protein; 96.5 0.035 7.6E-07 51.5 11.7 17 179-195 42-58 (233)
216 COG3421 Uncharacterized protei 96.5 0.0047 1E-07 63.3 6.2 159 183-352 2-178 (812)
217 PRK13709 conjugal transfer nic 96.5 0.031 6.7E-07 65.3 13.5 64 163-232 967-1032(1747)
218 cd01124 KaiC KaiC is a circadi 96.5 0.051 1.1E-06 48.0 12.4 48 181-239 2-49 (187)
219 PRK08116 hypothetical protein; 96.5 0.06 1.3E-06 51.1 13.4 26 179-205 115-140 (268)
220 PF00448 SRP54: SRP54-type pro 96.5 0.015 3.2E-07 52.6 8.7 23 180-202 3-25 (196)
221 PF05621 TniB: Bacterial TniB 96.5 0.018 3.9E-07 55.1 9.5 122 179-335 62-186 (302)
222 TIGR02760 TraI_TIGR conjugativ 96.4 0.046 1E-06 65.1 14.4 136 163-338 429-566 (1960)
223 PHA03368 DNA packaging termina 96.4 0.062 1.3E-06 56.5 13.6 144 179-351 255-404 (738)
224 PRK05642 DNA replication initi 96.4 0.029 6.3E-07 52.1 10.2 46 289-342 96-142 (234)
225 PRK06835 DNA replication prote 96.4 0.049 1.1E-06 53.3 12.1 45 177-232 182-226 (329)
226 COG1419 FlhF Flagellar GTP-bin 96.4 0.013 2.8E-07 58.0 8.0 90 178-276 203-292 (407)
227 COG0556 UvrB Helicase subunit 96.3 0.0097 2.1E-07 60.4 7.0 69 163-244 12-85 (663)
228 TIGR02760 TraI_TIGR conjugativ 96.3 0.032 6.8E-07 66.5 12.4 61 163-232 1019-1084(1960)
229 TIGR02881 spore_V_K stage V sp 96.3 0.022 4.8E-07 53.8 9.1 19 179-197 43-61 (261)
230 PRK06921 hypothetical protein; 96.3 0.12 2.6E-06 49.1 14.0 45 177-231 116-160 (266)
231 PTZ00112 origin recognition co 96.3 0.071 1.5E-06 57.9 13.4 28 289-317 868-895 (1164)
232 cd00984 DnaB_C DnaB helicase C 96.3 0.083 1.8E-06 48.9 12.7 142 176-337 11-171 (242)
233 PRK14721 flhF flagellar biosyn 96.2 0.087 1.9E-06 53.1 13.2 26 177-202 190-215 (420)
234 PRK08084 DNA replication initi 96.1 0.036 7.9E-07 51.5 9.5 19 178-196 45-63 (235)
235 PRK06904 replicative DNA helic 96.1 0.17 3.6E-06 52.1 15.0 148 175-337 218-382 (472)
236 PRK11054 helD DNA helicase IV; 96.1 0.031 6.6E-07 60.0 9.9 71 162-240 195-265 (684)
237 TIGR03600 phage_DnaB phage rep 96.1 0.11 2.5E-06 52.5 13.6 163 160-338 176-353 (421)
238 PF05876 Terminase_GpA: Phage 96.1 0.025 5.4E-07 59.4 8.9 167 163-351 16-193 (557)
239 KOG1015 Transcription regulato 96.1 0.061 1.3E-06 58.1 11.5 172 160-350 676-869 (1567)
240 PRK10919 ATP-dependent DNA hel 96.0 0.017 3.7E-07 62.1 7.7 69 163-239 2-70 (672)
241 TIGR00631 uvrb excinuclease AB 96.0 0.046 1E-06 58.4 10.9 66 163-241 9-79 (655)
242 TIGR02785 addA_Gpos recombinat 96.0 0.025 5.4E-07 64.8 9.4 122 164-301 2-126 (1232)
243 PRK14086 dnaA chromosomal repl 96.0 0.24 5.1E-06 52.2 15.7 45 289-340 376-421 (617)
244 PRK06731 flhF flagellar biosyn 96.0 0.26 5.7E-06 46.8 14.8 132 177-351 74-210 (270)
245 PRK14087 dnaA chromosomal repl 96.0 0.05 1.1E-06 55.6 10.6 47 179-234 142-188 (450)
246 PRK00149 dnaA chromosomal repl 96.0 0.077 1.7E-06 54.3 12.0 44 179-231 149-192 (450)
247 TIGR01547 phage_term_2 phage t 96.0 0.045 9.8E-07 54.9 10.2 139 180-342 3-143 (396)
248 PF13173 AAA_14: AAA domain 96.0 0.062 1.3E-06 44.8 9.3 40 290-340 61-100 (128)
249 COG0553 HepA Superfamily II DN 95.9 0.043 9.4E-07 60.4 10.6 136 161-304 336-486 (866)
250 PRK12377 putative replication 95.9 0.24 5.2E-06 46.5 13.9 45 178-233 101-145 (248)
251 PRK12726 flagellar biosynthesi 95.9 0.13 2.7E-06 51.2 12.2 25 177-201 205-229 (407)
252 TIGR03499 FlhF flagellar biosy 95.8 0.031 6.7E-07 53.5 7.7 24 178-201 194-217 (282)
253 PF03796 DnaB_C: DnaB-like hel 95.8 0.14 3E-06 48.2 12.1 147 177-338 18-179 (259)
254 PRK05973 replicative DNA helic 95.8 0.093 2E-06 48.8 10.6 83 146-239 23-114 (237)
255 KOG0298 DEAD box-containing he 95.8 0.03 6.5E-07 62.0 8.2 164 177-353 373-568 (1394)
256 PRK08903 DnaA regulatory inact 95.8 0.089 1.9E-06 48.4 10.3 19 177-195 41-59 (227)
257 PRK08769 DNA polymerase III su 95.7 0.18 3.8E-06 49.2 12.5 44 161-205 2-52 (319)
258 TIGR01425 SRP54_euk signal rec 95.7 0.13 2.7E-06 52.1 11.8 85 180-277 102-194 (429)
259 PRK12727 flagellar biosynthesi 95.6 0.1 2.2E-06 53.9 10.9 24 177-200 349-372 (559)
260 TIGR00362 DnaA chromosomal rep 95.6 0.12 2.5E-06 52.2 11.4 25 179-204 137-161 (405)
261 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.064 1.4E-06 49.9 8.8 53 177-240 20-72 (237)
262 PRK05707 DNA polymerase III su 95.6 0.16 3.6E-06 49.6 12.0 35 163-197 3-41 (328)
263 PRK11823 DNA repair protein Ra 95.6 0.18 3.9E-06 51.5 12.7 119 177-337 79-206 (446)
264 PRK12402 replication factor C 95.6 0.12 2.6E-06 50.3 11.1 18 180-197 38-55 (337)
265 PRK12724 flagellar biosynthesi 95.6 0.21 4.5E-06 50.3 12.6 24 179-202 224-247 (432)
266 PRK00411 cdc6 cell division co 95.6 0.1 2.2E-06 52.1 10.6 17 179-195 56-72 (394)
267 PRK14088 dnaA chromosomal repl 95.5 0.14 3.1E-06 52.1 11.7 25 179-204 131-155 (440)
268 PF00004 AAA: ATPase family as 95.5 0.21 4.6E-06 41.0 10.9 15 181-195 1-15 (132)
269 PRK12422 chromosomal replicati 95.5 0.13 2.7E-06 52.6 11.3 35 179-223 142-176 (445)
270 TIGR01075 uvrD DNA helicase II 95.5 0.034 7.4E-07 60.2 7.4 71 162-240 3-73 (715)
271 TIGR01074 rep ATP-dependent DN 95.5 0.042 9E-07 59.0 8.0 68 164-239 2-69 (664)
272 PRK08840 replicative DNA helic 95.5 0.32 7E-06 49.9 14.0 163 160-337 199-377 (464)
273 PRK13894 conjugal transfer ATP 95.4 0.056 1.2E-06 52.6 8.0 68 152-229 123-191 (319)
274 COG1435 Tdk Thymidine kinase [ 95.4 0.16 3.5E-06 45.5 10.0 104 178-317 4-108 (201)
275 COG1474 CDC6 Cdc6-related prot 95.4 0.077 1.7E-06 52.7 8.8 30 288-318 121-150 (366)
276 PRK07004 replicative DNA helic 95.4 0.2 4.4E-06 51.3 12.2 148 175-338 210-373 (460)
277 PRK14956 DNA polymerase III su 95.4 0.055 1.2E-06 55.3 7.9 20 180-199 42-61 (484)
278 PRK05748 replicative DNA helic 95.3 0.35 7.6E-06 49.4 13.9 147 176-338 201-364 (448)
279 PHA02544 44 clamp loader, smal 95.3 0.16 3.6E-06 49.0 11.0 41 140-195 17-60 (316)
280 PRK08006 replicative DNA helic 95.3 0.4 8.7E-06 49.3 14.2 148 175-337 221-384 (471)
281 PRK05298 excinuclease ABC subu 95.3 0.12 2.7E-06 55.3 10.8 66 163-241 12-82 (652)
282 COG4626 Phage terminase-like p 95.3 0.15 3.3E-06 52.4 10.6 150 163-337 61-223 (546)
283 PRK11773 uvrD DNA-dependent he 95.2 0.051 1.1E-06 58.9 7.7 71 162-240 8-78 (721)
284 TIGR00665 DnaB replicative DNA 95.2 0.33 7.1E-06 49.4 13.1 146 176-338 193-354 (434)
285 PRK04195 replication factor C 95.2 0.17 3.8E-06 52.1 11.2 44 140-195 10-56 (482)
286 KOG0386 Chromatin remodeling c 95.2 0.047 1E-06 59.2 6.9 128 163-302 394-527 (1157)
287 COG3973 Superfamily I DNA and 95.2 0.2 4.3E-06 52.0 11.0 95 144-242 185-286 (747)
288 CHL00181 cbbX CbbX; Provisiona 95.2 0.26 5.5E-06 47.3 11.4 20 178-197 59-78 (287)
289 TIGR02928 orc1/cdc6 family rep 95.1 0.09 2E-06 51.9 8.5 24 179-203 41-64 (365)
290 PRK08506 replicative DNA helic 95.1 0.4 8.7E-06 49.3 13.4 146 176-338 190-351 (472)
291 PRK06321 replicative DNA helic 95.0 0.42 9.2E-06 49.1 13.3 144 178-338 226-388 (472)
292 KOG0388 SNF2 family DNA-depend 95.0 0.38 8.3E-06 50.7 12.6 129 164-304 568-709 (1185)
293 PRK14964 DNA polymerase III su 95.0 0.46 1E-05 49.0 13.4 28 288-319 114-141 (491)
294 PRK08533 flagellar accessory p 94.9 0.49 1.1E-05 43.8 12.4 53 176-239 22-74 (230)
295 PRK13342 recombination factor 94.9 0.18 4E-06 50.9 10.3 17 180-196 38-54 (413)
296 PF13481 AAA_25: AAA domain; P 94.9 0.32 6.9E-06 43.2 10.8 145 177-336 31-186 (193)
297 PRK09183 transposase/IS protei 94.9 0.4 8.6E-06 45.3 11.8 23 175-197 99-121 (259)
298 cd01121 Sms Sms (bacterial rad 94.9 0.28 6E-06 48.9 11.1 118 177-336 81-207 (372)
299 TIGR03015 pepcterm_ATPase puta 94.8 0.2 4.3E-06 47.1 9.5 34 163-196 23-61 (269)
300 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.52 1.1E-05 43.3 12.1 52 177-239 19-70 (229)
301 PHA03372 DNA packaging termina 94.7 0.26 5.6E-06 51.4 10.7 142 179-351 203-351 (668)
302 COG2256 MGS1 ATPase related to 94.7 0.28 6E-06 48.6 10.3 38 292-342 106-143 (436)
303 TIGR02880 cbbX_cfxQ probable R 94.7 0.33 7.2E-06 46.5 10.9 18 178-195 58-75 (284)
304 TIGR00064 ftsY signal recognit 94.7 0.38 8.2E-06 45.8 11.1 24 178-201 72-95 (272)
305 PRK00771 signal recognition pa 94.6 0.28 6.1E-06 49.9 10.5 21 179-199 96-116 (437)
306 PF06745 KaiC: KaiC; InterPro 94.6 0.22 4.9E-06 45.6 9.1 53 177-239 18-70 (226)
307 PRK06964 DNA polymerase III su 94.6 0.55 1.2E-05 46.2 12.2 41 164-205 2-47 (342)
308 TIGR01073 pcrA ATP-dependent D 94.5 0.1 2.2E-06 56.7 7.7 71 162-240 3-73 (726)
309 PRK08699 DNA polymerase III su 94.5 0.42 9.1E-06 46.7 11.2 34 164-197 2-40 (325)
310 PRK08939 primosomal protein Dn 94.5 0.37 8E-06 46.7 10.6 19 178-196 156-174 (306)
311 PF03237 Terminase_6: Terminas 94.4 0.35 7.5E-06 47.2 10.7 102 182-303 1-110 (384)
312 PRK08760 replicative DNA helic 94.4 0.77 1.7E-05 47.3 13.4 145 177-338 228-388 (476)
313 PRK10416 signal recognition pa 94.4 1.2 2.6E-05 43.4 14.0 22 178-199 114-135 (318)
314 PRK05595 replicative DNA helic 94.4 0.28 6E-06 50.1 10.0 145 177-338 200-360 (444)
315 COG0470 HolB ATPase involved i 94.3 0.4 8.7E-06 46.2 10.8 20 178-197 23-43 (325)
316 TIGR00596 rad1 DNA repair prot 94.3 0.25 5.5E-06 53.9 10.0 68 267-342 8-75 (814)
317 PRK07471 DNA polymerase III su 94.3 1 2.2E-05 44.7 13.6 28 288-319 139-166 (365)
318 KOG0344 ATP-dependent RNA heli 94.2 0.78 1.7E-05 47.3 12.7 97 187-300 366-466 (593)
319 PRK13833 conjugal transfer pro 94.2 0.18 3.9E-06 49.2 7.9 66 154-229 121-187 (323)
320 PRK06067 flagellar accessory p 94.2 2.5 5.5E-05 38.9 15.4 52 177-239 24-75 (234)
321 KOG0991 Replication factor C, 94.2 0.16 3.4E-06 46.8 6.9 20 180-199 50-69 (333)
322 cd01393 recA_like RecA is a b 94.1 0.5 1.1E-05 43.1 10.4 139 177-338 18-168 (226)
323 PRK14951 DNA polymerase III su 94.1 0.81 1.7E-05 48.6 12.9 27 289-319 123-149 (618)
324 PRK06645 DNA polymerase III su 94.1 0.76 1.6E-05 47.7 12.5 20 180-199 45-64 (507)
325 PRK07994 DNA polymerase III su 94.0 0.67 1.4E-05 49.4 12.3 27 289-319 118-144 (647)
326 PRK12323 DNA polymerase III su 94.0 0.38 8.2E-06 51.0 10.2 41 288-337 122-162 (700)
327 PRK05636 replicative DNA helic 94.0 0.62 1.3E-05 48.3 11.8 46 289-337 374-423 (505)
328 PRK07003 DNA polymerase III su 94.0 0.51 1.1E-05 50.8 11.3 18 180-197 40-57 (830)
329 COG0552 FtsY Signal recognitio 94.0 0.66 1.4E-05 45.0 11.0 135 180-350 141-281 (340)
330 KOG2228 Origin recognition com 94.0 0.58 1.3E-05 45.5 10.5 62 275-341 122-183 (408)
331 PRK08691 DNA polymerase III su 93.9 0.35 7.5E-06 51.7 9.9 20 180-199 40-59 (709)
332 PLN03025 replication factor C 93.9 0.59 1.3E-05 45.5 11.0 19 179-197 35-53 (319)
333 PF07728 AAA_5: AAA domain (dy 93.9 0.021 4.6E-07 48.1 0.8 16 180-195 1-16 (139)
334 TIGR00580 mfd transcription-re 93.9 0.97 2.1E-05 50.3 13.8 80 215-302 659-742 (926)
335 KOG1133 Helicase of the DEAD s 93.9 0.09 1.9E-06 55.1 5.3 44 163-206 15-62 (821)
336 PHA00729 NTP-binding motif con 93.9 0.66 1.4E-05 42.8 10.6 16 180-195 19-34 (226)
337 TIGR02782 TrbB_P P-type conjug 93.9 0.27 5.9E-06 47.4 8.5 69 151-229 106-175 (299)
338 PRK14960 DNA polymerase III su 93.8 0.23 4.9E-06 52.7 8.2 20 180-199 39-58 (702)
339 PF05729 NACHT: NACHT domain 93.8 0.46 1E-05 40.5 9.1 25 180-205 2-26 (166)
340 PRK07764 DNA polymerase III su 93.7 0.37 8.1E-06 52.8 10.0 21 180-200 39-59 (824)
341 PRK04328 hypothetical protein; 93.7 0.65 1.4E-05 43.5 10.5 53 177-240 22-74 (249)
342 PF13177 DNA_pol3_delta2: DNA 93.6 0.48 1E-05 41.3 8.9 43 289-340 101-143 (162)
343 COG2909 MalT ATP-dependent tra 93.6 0.28 6.1E-06 52.8 8.6 137 178-342 37-173 (894)
344 COG4962 CpaF Flp pilus assembl 93.6 0.12 2.6E-06 50.2 5.3 61 160-231 154-215 (355)
345 PRK14961 DNA polymerase III su 93.6 0.68 1.5E-05 46.0 10.9 18 180-197 40-57 (363)
346 PRK10867 signal recognition pa 93.6 0.86 1.9E-05 46.3 11.6 86 180-277 102-195 (433)
347 PRK14949 DNA polymerase III su 93.5 0.37 8.1E-06 52.7 9.4 27 289-319 118-144 (944)
348 PRK13341 recombination factor 93.5 0.42 9.1E-06 51.7 9.8 40 290-342 109-148 (725)
349 PTZ00293 thymidine kinase; Pro 93.5 0.91 2E-05 41.4 10.6 39 178-226 4-42 (211)
350 KOG0741 AAA+-type ATPase [Post 93.5 0.78 1.7E-05 47.1 10.9 68 146-225 494-573 (744)
351 KOG0733 Nuclear AAA ATPase (VC 93.5 0.86 1.9E-05 47.6 11.3 54 138-194 184-239 (802)
352 TIGR02237 recomb_radB DNA repa 93.4 0.93 2E-05 40.9 10.8 39 177-225 11-49 (209)
353 PRK00440 rfc replication facto 93.4 1.3 2.9E-05 42.5 12.5 17 180-196 40-56 (319)
354 PRK09111 DNA polymerase III su 93.4 0.9 1.9E-05 48.1 12.0 45 140-199 20-67 (598)
355 PF05496 RuvB_N: Holliday junc 93.4 0.27 5.9E-06 45.2 7.1 17 180-196 52-68 (233)
356 PRK10689 transcription-repair 93.4 0.68 1.5E-05 52.7 11.6 93 215-319 808-904 (1147)
357 TIGR00959 ffh signal recogniti 93.4 0.5 1.1E-05 47.9 9.6 86 180-277 101-194 (428)
358 PRK14952 DNA polymerase III su 93.4 1 2.2E-05 47.5 12.2 19 181-199 38-56 (584)
359 PRK14962 DNA polymerase III su 93.3 0.38 8.2E-06 49.5 8.8 18 180-197 38-55 (472)
360 PRK06871 DNA polymerase III su 93.3 1.4 3.1E-05 43.0 12.3 34 164-197 3-43 (325)
361 KOG1001 Helicase-like transcri 93.2 0.36 7.8E-06 51.6 8.7 116 180-305 154-269 (674)
362 PRK14958 DNA polymerase III su 93.2 0.45 9.7E-06 49.4 9.2 18 180-197 40-57 (509)
363 PF14516 AAA_35: AAA-like doma 93.1 1.3 2.7E-05 43.5 11.8 131 166-320 18-158 (331)
364 COG1197 Mfd Transcription-repa 93.1 0.73 1.6E-05 51.4 10.9 161 141-320 712-899 (1139)
365 PF01637 Arch_ATPase: Archaeal 93.1 0.039 8.4E-07 50.2 1.1 17 178-194 20-36 (234)
366 TIGR03689 pup_AAA proteasome A 93.0 0.22 4.8E-06 51.5 6.6 17 178-194 216-232 (512)
367 PRK14963 DNA polymerase III su 93.0 0.9 1.9E-05 47.2 11.1 28 288-319 114-141 (504)
368 COG1484 DnaC DNA replication p 93.0 0.26 5.6E-06 46.4 6.5 48 177-235 104-151 (254)
369 TIGR00416 sms DNA repair prote 92.9 1.5 3.2E-05 45.0 12.3 122 177-337 93-220 (454)
370 PRK09165 replicative DNA helic 92.8 1.1 2.5E-05 46.3 11.6 153 177-337 216-391 (497)
371 PRK13851 type IV secretion sys 92.8 0.17 3.6E-06 49.8 5.2 46 173-229 157-202 (344)
372 PF01695 IstB_IS21: IstB-like 92.8 0.29 6.2E-06 43.5 6.2 46 176-232 45-90 (178)
373 TIGR03878 thermo_KaiC_2 KaiC d 92.8 1.2 2.7E-05 41.9 10.9 37 177-223 35-71 (259)
374 PRK14954 DNA polymerase III su 92.8 1.1 2.5E-05 47.5 11.6 28 288-319 125-152 (620)
375 KOG0732 AAA+-type ATPase conta 92.7 0.25 5.5E-06 54.6 6.7 56 139-195 260-316 (1080)
376 PRK09112 DNA polymerase III su 92.6 3.1 6.7E-05 41.1 13.8 31 174-205 38-71 (351)
377 COG3598 RepA RecA-family ATPas 92.6 1.1 2.4E-05 43.3 10.0 165 167-342 77-245 (402)
378 PRK05563 DNA polymerase III su 92.6 0.6 1.3E-05 49.1 9.3 21 179-199 39-59 (559)
379 COG2804 PulE Type II secretory 92.6 0.23 4.9E-06 50.7 5.9 40 165-205 243-284 (500)
380 PRK10436 hypothetical protein; 92.6 0.5 1.1E-05 48.4 8.4 37 166-203 204-242 (462)
381 cd01126 TraG_VirD4 The TraG/Tr 92.6 0.1 2.3E-06 52.1 3.4 48 180-239 1-48 (384)
382 cd01125 repA Hexameric Replica 92.5 1.6 3.5E-05 40.4 11.2 61 180-241 3-65 (239)
383 TIGR00678 holB DNA polymerase 92.4 1.4 3.1E-05 39.1 10.3 28 288-319 94-121 (188)
384 cd01130 VirB11-like_ATPase Typ 92.4 0.23 5E-06 44.3 5.1 38 156-195 4-42 (186)
385 TIGR01243 CDC48 AAA family ATP 92.4 0.75 1.6E-05 50.1 10.0 54 139-195 173-229 (733)
386 COG5008 PilU Tfp pilus assembl 92.4 0.12 2.6E-06 48.4 3.2 16 181-196 130-145 (375)
387 PRK03992 proteasome-activating 92.3 0.34 7.4E-06 48.6 6.8 53 140-195 127-182 (389)
388 PF02534 T4SS-DNA_transf: Type 92.3 0.18 3.9E-06 51.7 4.8 49 179-239 45-93 (469)
389 PRK14965 DNA polymerase III su 92.2 1 2.2E-05 47.6 10.4 18 180-197 40-57 (576)
390 PRK14957 DNA polymerase III su 92.2 2.1 4.5E-05 44.9 12.5 20 180-199 40-59 (546)
391 PRK14948 DNA polymerase III su 92.2 0.95 2E-05 48.2 10.2 27 289-319 120-146 (620)
392 PRK14969 DNA polymerase III su 92.2 1.7 3.8E-05 45.3 12.0 40 288-336 117-156 (527)
393 TIGR01650 PD_CobS cobaltochela 92.2 0.46 9.9E-06 46.3 7.2 23 173-195 59-81 (327)
394 PRK06090 DNA polymerase III su 92.2 1.3 2.9E-05 43.0 10.4 33 163-195 3-42 (319)
395 KOG0742 AAA+-type ATPase [Post 92.2 0.23 5E-06 49.3 5.0 104 179-338 385-492 (630)
396 TIGR01241 FtsH_fam ATP-depende 92.1 0.31 6.7E-06 50.5 6.4 54 139-195 50-105 (495)
397 KOG0733 Nuclear AAA ATPase (VC 92.1 0.61 1.3E-05 48.6 8.2 55 138-195 505-562 (802)
398 PRK06749 replicative DNA helic 92.1 2.7 5.9E-05 42.7 13.0 44 291-337 300-348 (428)
399 cd03239 ABC_SMC_head The struc 92.1 0.28 6.1E-06 43.5 5.3 43 289-338 115-157 (178)
400 PRK13764 ATPase; Provisional 92.1 0.36 7.7E-06 50.9 6.7 27 177-204 256-282 (602)
401 TIGR02525 plasmid_TraJ plasmid 92.0 0.43 9.2E-06 47.5 6.9 28 177-205 148-175 (372)
402 PRK14959 DNA polymerase III su 91.9 0.91 2E-05 48.1 9.4 20 180-199 40-59 (624)
403 PF12846 AAA_10: AAA-like doma 91.8 0.31 6.6E-06 46.2 5.6 26 178-203 1-26 (304)
404 PRK07940 DNA polymerase III su 91.7 1.8 3.8E-05 43.5 11.0 19 179-197 37-55 (394)
405 CHL00176 ftsH cell division pr 91.7 0.45 9.8E-06 50.7 7.1 17 179-195 217-233 (638)
406 PRK09087 hypothetical protein; 91.7 3.2 7E-05 38.3 12.0 19 178-196 44-62 (226)
407 TIGR01243 CDC48 AAA family ATP 91.7 0.43 9.3E-06 52.0 7.1 53 140-195 449-504 (733)
408 PRK14955 DNA polymerase III su 91.6 0.87 1.9E-05 45.8 8.8 28 288-319 125-152 (397)
409 PRK14950 DNA polymerase III su 91.6 1.3 2.8E-05 46.9 10.4 28 288-319 118-145 (585)
410 KOG0738 AAA+-type ATPase [Post 91.5 0.062 1.3E-06 52.8 0.4 56 139-194 181-261 (491)
411 TIGR02538 type_IV_pilB type IV 91.5 0.67 1.4E-05 48.9 8.1 44 156-203 295-340 (564)
412 PRK04841 transcriptional regul 91.5 2 4.3E-05 47.7 12.3 45 289-341 120-164 (903)
413 PRK04537 ATP-dependent RNA hel 91.4 1.5 3.3E-05 46.3 10.7 75 215-299 256-334 (572)
414 PRK07993 DNA polymerase III su 91.4 1.3 2.8E-05 43.5 9.5 33 164-196 3-42 (334)
415 TIGR00643 recG ATP-dependent D 91.4 3.5 7.7E-05 44.1 13.6 93 215-319 447-551 (630)
416 COG2874 FlaH Predicted ATPases 91.4 3.6 7.8E-05 37.6 11.4 57 288-349 121-178 (235)
417 TIGR02012 tigrfam_recA protein 91.4 1.8 3.8E-05 42.2 10.2 43 177-229 54-96 (321)
418 PHA02542 41 41 helicase; Provi 91.3 1.7 3.8E-05 44.7 10.7 63 273-338 283-353 (473)
419 TIGR00763 lon ATP-dependent pr 91.3 0.64 1.4E-05 50.9 8.0 19 177-195 346-364 (775)
420 PRK13900 type IV secretion sys 91.3 0.62 1.4E-05 45.7 7.2 45 174-229 156-200 (332)
421 TIGR02655 circ_KaiC circadian 91.2 1.7 3.7E-05 44.9 10.6 60 170-240 250-314 (484)
422 TIGR02524 dot_icm_DotB Dot/Icm 91.2 0.26 5.5E-06 48.9 4.4 27 177-204 133-159 (358)
423 cd01394 radB RadB. The archaea 91.2 1.2 2.6E-05 40.5 8.6 36 178-223 19-54 (218)
424 COG0466 Lon ATP-dependent Lon 91.2 0.67 1.5E-05 49.2 7.5 96 177-318 349-445 (782)
425 PRK08451 DNA polymerase III su 91.1 1.3 2.8E-05 46.2 9.5 40 288-336 115-154 (535)
426 PRK13695 putative NTPase; Prov 91.1 5.1 0.00011 35.0 12.2 18 180-197 2-19 (174)
427 PRK11034 clpA ATP-dependent Cl 91.1 0.7 1.5E-05 50.3 7.9 19 178-196 207-225 (758)
428 KOG0331 ATP-dependent RNA heli 91.0 1.2 2.6E-05 45.9 9.1 72 215-296 340-415 (519)
429 KOG0737 AAA+-type ATPase [Post 91.0 0.77 1.7E-05 45.0 7.3 54 139-195 87-144 (386)
430 KOG0744 AAA+-type ATPase [Post 91.0 1 2.2E-05 43.6 7.9 193 178-391 177-419 (423)
431 cd01129 PulE-GspE PulE/GspE Th 91.0 0.96 2.1E-05 42.8 7.9 44 156-203 59-104 (264)
432 cd03115 SRP The signal recogni 91.0 3.9 8.4E-05 35.6 11.4 19 181-199 3-21 (173)
433 TIGR00631 uvrb excinuclease AB 90.9 2.8 6.2E-05 44.9 12.2 111 215-341 441-555 (655)
434 PLN03187 meiotic recombination 90.9 14 0.00031 36.4 16.1 28 137-164 28-55 (344)
435 KOG1513 Nuclear helicase MOP-3 90.6 0.31 6.8E-06 51.9 4.5 156 163-342 264-457 (1300)
436 PHA02535 P terminase ATPase su 90.6 2.1 4.5E-05 44.9 10.4 85 148-241 123-207 (581)
437 PRK05896 DNA polymerase III su 90.6 1.6 3.4E-05 46.1 9.6 21 179-199 39-59 (605)
438 KOG2004 Mitochondrial ATP-depe 90.5 1.9 4.2E-05 45.9 10.0 110 163-318 415-533 (906)
439 PRK04837 ATP-dependent RNA hel 90.4 1.7 3.8E-05 43.9 9.7 72 216-297 255-330 (423)
440 KOG0745 Putative ATP-dependent 90.3 0.78 1.7E-05 46.0 6.7 57 179-247 227-287 (564)
441 TIGR00767 rho transcription te 90.2 0.97 2.1E-05 45.3 7.4 21 175-195 165-185 (415)
442 PRK09361 radB DNA repair and r 90.2 1.8 3.9E-05 39.6 8.8 38 177-224 22-59 (225)
443 PHA00149 DNA encapsidation pro 90.2 9.5 0.00021 36.4 13.4 169 182-376 21-194 (331)
444 cd01123 Rad51_DMC1_radA Rad51_ 90.2 1.6 3.4E-05 40.1 8.5 44 177-224 18-61 (235)
445 PRK11192 ATP-dependent RNA hel 90.1 2.1 4.7E-05 43.3 10.1 72 215-296 244-319 (434)
446 PRK07773 replicative DNA helic 90.1 2.5 5.5E-05 47.1 11.3 145 177-338 216-376 (886)
447 PRK13897 type IV secretion sys 90.0 0.4 8.7E-06 50.7 4.8 49 179-239 159-207 (606)
448 COG3267 ExeA Type II secretory 89.9 2.5 5.5E-05 39.5 9.3 31 173-204 45-76 (269)
449 PRK05986 cob(I)alamin adenolsy 89.9 1.1 2.5E-05 40.1 6.9 36 177-222 21-56 (191)
450 KOG0058 Peptide exporter, ABC 89.9 0.9 2E-05 48.3 7.1 32 288-319 620-651 (716)
451 PF03969 AFG1_ATPase: AFG1-lik 89.8 3.7 8.1E-05 40.7 11.2 46 289-342 126-171 (362)
452 TIGR03880 KaiC_arch_3 KaiC dom 89.7 3.7 8E-05 37.5 10.5 52 177-239 15-66 (224)
453 TIGR02397 dnaX_nterm DNA polym 89.6 2.4 5.1E-05 41.5 9.8 28 288-319 115-142 (355)
454 TIGR01420 pilT_fam pilus retra 89.6 0.9 1.9E-05 44.7 6.6 43 177-228 121-163 (343)
455 PF01443 Viral_helicase1: Vira 89.5 0.49 1.1E-05 43.3 4.5 15 181-195 1-15 (234)
456 PRK09376 rho transcription ter 89.5 1.4 3E-05 44.1 7.7 40 165-205 153-195 (416)
457 PRK09354 recA recombinase A; P 89.5 1.7 3.8E-05 42.8 8.4 44 177-230 59-102 (349)
458 PHA00012 I assembly protein 89.4 4.8 0.0001 39.2 11.1 57 287-350 78-139 (361)
459 PF00437 T2SE: Type II/IV secr 89.4 0.53 1.1E-05 44.5 4.7 45 175-229 124-168 (270)
460 TIGR00602 rad24 checkpoint pro 89.4 1.9 4E-05 46.0 9.2 50 140-197 80-129 (637)
461 cd00544 CobU Adenosylcobinamid 89.2 7.3 0.00016 34.2 11.5 45 181-238 2-46 (169)
462 PRK05800 cobU adenosylcobinami 89.2 6.6 0.00014 34.5 11.2 18 179-196 2-19 (170)
463 PRK14953 DNA polymerase III su 89.2 3.3 7.2E-05 42.8 10.6 28 288-319 117-144 (486)
464 KOG0333 U5 snRNP-like RNA heli 89.2 1.9 4.1E-05 44.2 8.5 87 215-319 516-606 (673)
465 cd01127 TrwB Bacterial conjuga 89.1 0.42 9.2E-06 48.2 4.1 32 172-204 36-67 (410)
466 cd00983 recA RecA is a bacter 88.9 4 8.6E-05 39.9 10.4 44 177-230 54-97 (325)
467 PRK10263 DNA translocase FtsK; 88.8 1.8 4E-05 49.1 8.9 27 179-205 1011-1037(1355)
468 TIGR02868 CydC thiol reductant 88.8 0.8 1.7E-05 47.7 5.9 31 288-318 486-516 (529)
469 PRK09435 membrane ATPase/prote 88.8 13 0.00028 36.4 14.0 83 269-351 174-257 (332)
470 PTZ00110 helicase; Provisional 88.7 2.9 6.3E-05 43.9 10.0 72 215-296 376-451 (545)
471 KOG2028 ATPase related to the 88.5 1.7 3.6E-05 42.9 7.3 49 180-238 164-212 (554)
472 PF10412 TrwB_AAD_bind: Type I 88.5 0.47 1E-05 47.5 3.8 29 176-205 13-41 (386)
473 KOG1131 RNA polymerase II tran 88.5 2.6 5.7E-05 43.2 8.9 73 160-238 13-89 (755)
474 PRK10917 ATP-dependent DNA hel 88.5 18 0.00039 39.2 16.1 93 215-319 470-574 (681)
475 TIGR03743 SXT_TraD conjugative 88.4 1.1 2.4E-05 47.8 6.8 53 178-240 176-230 (634)
476 COG1132 MdlB ABC-type multidru 88.4 1.4 3E-05 46.4 7.5 32 288-319 481-512 (567)
477 KOG0734 AAA+-type ATPase conta 88.3 2.4 5.2E-05 43.7 8.6 67 269-338 376-446 (752)
478 COG1219 ClpX ATP-dependent pro 88.3 0.36 7.9E-06 46.5 2.7 142 179-341 98-260 (408)
479 PRK10590 ATP-dependent RNA hel 88.3 3.4 7.3E-05 42.3 10.1 71 216-296 245-319 (456)
480 KOG3089 Predicted DEAD-box-con 88.2 0.51 1.1E-05 42.8 3.4 34 265-298 195-228 (271)
481 PRK11776 ATP-dependent RNA hel 88.1 2.9 6.3E-05 42.7 9.5 74 216-299 242-319 (460)
482 PRK07399 DNA polymerase III su 88.1 6.5 0.00014 38.2 11.4 58 269-337 104-161 (314)
483 TIGR02640 gas_vesic_GvpN gas v 88.0 0.53 1.2E-05 44.4 3.7 27 170-196 13-39 (262)
484 PF05894 Podovirus_Gp16: Podov 88.0 18 0.00039 35.0 13.8 171 181-381 20-199 (333)
485 PRK13850 type IV secretion sys 88.0 0.68 1.5E-05 49.6 4.8 48 179-238 140-187 (670)
486 PRK14971 DNA polymerase III su 87.7 6.7 0.00014 41.8 12.1 28 288-319 119-146 (614)
487 KOG0730 AAA+-type ATPase [Post 87.7 1.6 3.5E-05 45.9 7.1 54 139-195 429-485 (693)
488 KOG2373 Predicted mitochondria 87.6 1.2 2.6E-05 43.5 5.7 27 178-204 273-299 (514)
489 PHA00350 putative assembly pro 87.6 3.7 8E-05 41.2 9.4 23 181-203 4-27 (399)
490 PRK07133 DNA polymerase III su 87.5 2 4.4E-05 46.3 8.0 28 288-319 116-143 (725)
491 TIGR02639 ClpA ATP-dependent C 87.5 3.7 8.1E-05 44.7 10.2 19 179-197 204-222 (731)
492 PRK14970 DNA polymerase III su 87.4 9.3 0.0002 37.7 12.3 28 288-319 106-133 (367)
493 TIGR00635 ruvB Holliday juncti 87.4 0.64 1.4E-05 44.7 3.9 17 179-195 31-47 (305)
494 PF12775 AAA_7: P-loop contain 87.4 0.44 9.5E-06 45.4 2.7 21 175-195 30-50 (272)
495 PRK06647 DNA polymerase III su 87.3 3.7 8.1E-05 43.2 9.8 28 288-319 117-144 (563)
496 KOG1969 DNA replication checkp 87.3 2.5 5.4E-05 45.2 8.2 41 275-319 370-412 (877)
497 TIGR02533 type_II_gspE general 87.2 1.1 2.3E-05 46.4 5.6 45 155-203 220-266 (486)
498 CHL00095 clpC Clp protease ATP 87.2 2.7 5.9E-05 46.4 9.1 16 180-195 541-556 (821)
499 TIGR03346 chaperone_ClpB ATP-d 87.0 2.3 5E-05 47.2 8.4 18 179-196 195-212 (852)
500 PF03029 ATP_bind_1: Conserved 87.0 0.44 9.6E-06 44.4 2.4 22 183-205 1-22 (238)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-43 Score=347.20 Aligned_cols=204 Identities=33% Similarity=0.493 Sum_probs=190.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
.|++++|++.++.++...||..|||||.++||.++.|+|+++.|.|||||||+|++|++.++..... ...++++|++||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~-~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG-KLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc-cccCCCCCeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999987411 122557999999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
|+||||||.|+...+..++...+++++|+|||.+...|.+.+.++++|+|+|||||+++++.+.+++++|.|+||||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|+|+||.++++.|+..++. +..|++++|||+|.. ..++..|+.++
T Consensus 251 MldmGFe~qI~~Il~~i~~-------~~rQtlm~saTwp~~v~~lA~~fl~~~ 296 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPR-------PDRQTLMFSATWPKEVRQLAEDFLNNP 296 (519)
T ss_pred hhccccHHHHHHHHHhcCC-------CcccEEEEeeeccHHHHHHHHHHhcCc
Confidence 9999999999999999953 455999999999988 78888888743
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-42 Score=327.60 Aligned_cols=192 Identities=30% Similarity=0.464 Sum_probs=183.4
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
..+...+|.++|+.+.+++++...||..||+||.++||.++.|+|||+.|.||||||.+|++|+++.++.++ .
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-------~ 128 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-------K 128 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-------C
Confidence 345678899999999999999999999999999999999999999999999999999999999999999854 5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcceE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYV 294 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~l 294 (397)
.++++||+||||||.||...+..++...|++++++.||.+...+...+.+.+||||+|||+|++|+.+ +.+++..++|+
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999995 78899999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
|+||||+++|+.|.+.+..|++.++ ..+|+++|||||+..
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip--------~erqt~LfsATMt~k 248 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIP--------RERQTFLFSATMTKK 248 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcC--------ccceEEEEEeecchh
Confidence 9999999999999999999999998 588999999999988
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-42 Score=333.66 Aligned_cols=196 Identities=31% Similarity=0.492 Sum_probs=183.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..+|.+++|+..+++++..+||..|||||..+||..+-|+|++.||.||||||.+|++|+|++++..+. +....++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk----~~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK----KVAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc----cCcceeE
Confidence 568999999999999999999999999999999999999999999999999999999999999987542 3346699
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcceEEEcC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDE 298 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDE 298 (397)
|||||||+|+.|++.+.+.++.++.+.++.+.||.+...|...++..|||||+|||||.+||.+ ..+++++|..+|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999999998 478899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHH
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLME 347 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~ 347 (397)
||+||+.||.++|..|++.++ .++|+++|||||+.. .+++.
T Consensus 336 ADRMLeegFademnEii~lcp--------k~RQTmLFSATMteeVkdL~s 377 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCP--------KNRQTMLFSATMTEEVKDLAS 377 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------ccccceeehhhhHHHHHHHHH
Confidence 999999999999999999998 688999999999988 55544
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-39 Score=333.92 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=184.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
..|++++|++.+++++.++||..|||||..+||.++.|+|++++|+||||||++|++|+++.+.... ......+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-----~~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-----ERKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-----ccCCCceE
Confidence 6799999999999999999999999999999999999999999999999999999999999976420 00111299
Q ss_pred EEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
|++||||||.|+++.+..++.+. ++++++++||.+...+...+..+++|||||||||++|+.++.+++..++++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999998 79999999999999999999889999999999999999999999999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|+|+++||.+++..|+..++ .+.|+++||||++.. ..++..++.++
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p--------~~~qtllfSAT~~~~i~~l~~~~l~~p 230 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALP--------PDRQTLLFSATMPDDIRELARRYLNDP 230 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCC--------cccEEEEEecCCCHHHHHHHHHHccCC
Confidence 99999999999999999998 478999999999998 67777777754
No 5
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=315.62 Aligned_cols=213 Identities=27% Similarity=0.420 Sum_probs=189.3
Q ss_pred hhhccCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccc
Q 015946 129 REKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEA 208 (397)
Q Consensus 129 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~ 208 (397)
...........+..|.+|+|+..+.++|++.+|..+|.+|+.+||..+.|+|||..|.|||||||||++|+|+.+.+..+
T Consensus 57 ~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW 136 (758)
T KOG0343|consen 57 KQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW 136 (758)
T ss_pred HHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC
Confidence 34444444566789999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred cCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCC
Q 015946 209 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVS 287 (397)
Q Consensus 209 ~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~ 287 (397)
. ...|.-||||+||||||.|++.++..++.+.++.++.+.||........+++. ++|||||||||++||.. -.++
T Consensus 137 s---~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~-mNILVCTPGRLLQHmde~~~f~ 212 (758)
T KOG0343|consen 137 S---PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ-MNILVCTPGRLLQHMDENPNFS 212 (758)
T ss_pred C---CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc-CCeEEechHHHHHHhhhcCCCC
Confidence 3 34688899999999999999999999999999999999999998776666654 89999999999999986 5778
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
..++.+|||||||+|+|+||...+..|+..|+ +..|+++||||-+.. .++++.=..+|
T Consensus 213 t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP--------~~RQTLLFSATqt~svkdLaRLsL~dP 271 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGFKKTLNAIIENLP--------KKRQTLLFSATQTKSVKDLARLSLKDP 271 (758)
T ss_pred CCcceEEEeccHHHHHHHhHHHHHHHHHHhCC--------hhheeeeeecccchhHHHHHHhhcCCC
Confidence 99999999999999999999999999999998 678999999999988 55555433343
No 6
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=307.63 Aligned_cols=246 Identities=24% Similarity=0.393 Sum_probs=216.5
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCC
Q 015946 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (397)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 212 (397)
..+.+.++++|+.+|++..|+.++...-|++|||+|++++|..+.|+||+..|.||||||.+|+.|++.++..+....
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-- 292 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-- 292 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc--
Confidence 346678899999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred CCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcc
Q 015946 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (397)
Q Consensus 213 ~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~ 292 (397)
.+.+|.+|||||||+||.||+..++.|++..+++++++|||.+..+|...+..++.|||||||||++++..+..++.++.
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhccCCceeeEEeecCc--eee
Q 015946 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDNAGKVTAMLLEMDQ--AEV 369 (397)
Q Consensus 293 ~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~~~~v~~~~~~v~~--~~~ 369 (397)
||||||||+|+++||.++++.|...++ +.+|+|+||||+... ..+++-+..+++..|..-+-...+ ...
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~hir--------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~ 444 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQHIR--------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhhcC--------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhhe
Confidence 999999999999999999999999987 899999999999988 888888888887666654422222 334
Q ss_pred EEeccChHHHHHHHHHHHH
Q 015946 370 FDLTESQDALKKKVVEAMD 388 (397)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~~ 388 (397)
+.+..+.+.+...|+.-|.
T Consensus 445 V~V~~s~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 445 VSVCPSEEKKLNWLLRHLV 463 (731)
T ss_pred eeeccCcHHHHHHHHHHhh
Confidence 5555555555444444433
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.3e-38 Score=324.39 Aligned_cols=209 Identities=27% Similarity=0.439 Sum_probs=188.9
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCC
Q 015946 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (397)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 213 (397)
...+.++.+|+++++++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|++|++..+...... ..
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--~~ 200 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--RY 200 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--cC
Confidence 3456778899999999999999999999999999999999999999999999999999999999999988653211 12
Q ss_pred CCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcce
Q 015946 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (397)
Q Consensus 214 ~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 293 (397)
..++.+|||+||++||.|+...+..++...++++.+++||.....+...+..+++|+|+||++|++++..+...+.++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 35789999999999999999999999988899999999999988888888889999999999999999998889999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
|||||||+|++++|..++..|+..++ +.+|+++||||++.. ..++.++...
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~--------~~~q~l~~SAT~p~~v~~l~~~l~~~ 332 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIR--------PDRQTLMWSATWPKEVQSLARDLCKE 332 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCC--------CCCeEEEEEeCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999876 678999999999977 6677766643
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-37 Score=320.26 Aligned_cols=209 Identities=25% Similarity=0.430 Sum_probs=186.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
..+.++.+|++++|++.++++|...||..|||+|.++||.++.|+|++++||||||||++|++|++..+...........
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~ 194 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQ 194 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999998865322112233
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.++++|||+|||+||.|+...++.+....++++.+++||.....+...+..+++|+|+||++|.+++.++.+.+.++++|
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~l 274 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVL 274 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEE
Confidence 67899999999999999999999998888899999999998888888888889999999999999999988899999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
||||||+|+++||..++..|+..++ ++|+++||||+++. ..++.++...
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~---------~~q~l~~SATl~~~v~~l~~~~~~~ 324 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS---------QPQVLLFSATVSPEVEKFASSLAKD 324 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC---------CCcEEEEEeeCCHHHHHHHHHhCCC
Confidence 9999999999999999999998774 67999999999987 5566666543
No 9
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=310.04 Aligned_cols=206 Identities=27% Similarity=0.423 Sum_probs=180.9
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccC--
Q 015946 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL-- 210 (397)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~-- 210 (397)
++...++..|.+|+++..++++|..+||..||+||..+||++..| .|++..|.|||||||||.||+++.+.......
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 345567889999999999999999999999999999999999999 69999999999999999999999554321100
Q ss_pred --CCCCCCC--ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC
Q 015946 211 --PMKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 286 (397)
Q Consensus 211 --~~~~~~~--~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~ 286 (397)
....+++ .+||++||||||.||...+..+...+++++..++||.....|.+.++..++|||+||||||.++..+..
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 0122344 599999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred ---CCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 287 ---SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 287 ---~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
++.+|+||||||+|+|++.|++..+..|+..|.. .+.+...|+++|||||+-.
T Consensus 334 ~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e---~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 334 HLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE---EQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred hhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh---hhcccccceEEEEEEeehh
Confidence 6889999999999999999999999999999973 3345678999999999966
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4e-37 Score=310.45 Aligned_cols=205 Identities=25% Similarity=0.364 Sum_probs=181.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..+|++++|++.++++|..+||..||++|.++||.++.|+|++++||||||||++|++|+++.+............++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46899999999999999999999999999999999999999999999999999999999999987654322222346899
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
|||+||++||.|+++.+..+....++++..++||.....+...+..+++|+||||++|++++..+.+.+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999999988888888888999999999999999998899999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhh
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLE 350 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~ 350 (397)
|+|++++|...+..++..++.. ...|+++||||++.. ..+....+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~ 212 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPA------NQRLNMLFSATLSYRVRELAFEHM 212 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCc------cceeEEEEeccCCHHHHHHHHHHC
Confidence 9999999999999999888631 356889999999977 44443333
No 11
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-38 Score=304.63 Aligned_cols=210 Identities=28% Similarity=0.489 Sum_probs=180.8
Q ss_pred cccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
+-.-..|..+||++.++..|.. +++..||.+|.++||.++.|+|++|.|+||||||++|++|+++.++....... +..
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-Rs~ 210 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-RSD 210 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-ccC
Confidence 3445679999999999999974 79999999999999999999999999999999999999999999987543322 457
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcce
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRY 293 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~ 293 (397)
|+.+|||+||||||.|+|+.++.+.+.. -+..+.+.||........++++|++|||+|||||++||.+ ..+.++.++|
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999887654 4566788899888888889999999999999999999988 5788999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhh----hhhc-cCCCCceEEEEeccCCCC-hhHHH
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKD----SALK-SNGQGFQTILVTAAIAEL-SSLME 347 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~----~~~~-~~~~~~q~i~~SATl~~~-~~l~~ 347 (397)
||+||+|++++.||...+..|++.+.. .+.. .-++..|.+++||||++. .+++.
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~ 350 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLAD 350 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhh
Confidence 999999999999999999999999942 2222 222347899999999988 33333
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=301.14 Aligned_cols=203 Identities=29% Similarity=0.441 Sum_probs=184.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
++......|+++.|++.+.+++.++||..+|++|+.+|+.++.|+|+++.|.||||||+||+||+++.+.+.... ..
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~---~r 152 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK---PR 152 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC---CC
Confidence 344556789999999999999999999999999999999999999999999999999999999999999886543 22
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcc
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIR 292 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~ 292 (397)
.+..+|||||||+||.|++..++.+..+. ++.+.++.||.+.....+.+.++|+|+|+|||||++|+++ ..+.+.+++
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 57789999999999999999999999888 8999999999999888888888999999999999999998 456678889
Q ss_pred eEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHh
Q 015946 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMEC 348 (397)
Q Consensus 293 ~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~ 348 (397)
++|+||||++++.||..+++.|+..++ ..+|+++||||.+.. .+++.-
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lp--------k~rqt~LFSAT~~~kV~~l~~~ 281 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILP--------KQRQTLLFSATQPSKVKDLARG 281 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhcc--------ccceeeEeeCCCcHHHHHHHHH
Confidence 999999999999999999999999998 578999999999988 555543
No 13
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-37 Score=294.13 Aligned_cols=203 Identities=29% Similarity=0.418 Sum_probs=177.0
Q ss_pred cccccCCCC--HHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 141 SSFQELGLK--AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 141 ~~f~~l~l~--~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
..|++++.+ +++++++..+||...||+|..+||.++.++||++.|+||||||+||++|++..+.+.....+ +....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~--~~~vg 81 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP--PGQVG 81 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--cccee
Confidence 468888765 99999999999999999999999999999999999999999999999999999966543222 12457
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhc-CCcceeeecCCCChHHHHHHh-cCCccEEEeChHHHHHHHhcC--CCCCCCcceE
Q 015946 219 AIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDR--NVSCDDIRYV 294 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~TP~~L~~~l~~~--~~~l~~l~~l 294 (397)
+|||+|||||+.||.+++..+... ..+.+.++.||.........+ ..+++|+|||||||.+++++. .+++.++.+|
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 999999999999999999888766 688999999998887766554 567999999999999999984 4556799999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|+||||+++|+||...++.|++.|+ ..+++-+||||.+.. .+++..-..++
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LP--------KQRRTGLFSATq~~~v~dL~raGLRNp 213 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLP--------KQRRTGLFSATQTQEVEDLARAGLRNP 213 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcc--------cccccccccchhhHHHHHHHHhhccCc
Confidence 9999999999999999999999999 477999999999988 66776666655
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.8e-36 Score=308.91 Aligned_cols=199 Identities=29% Similarity=0.450 Sum_probs=181.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
+.+|++++|++.++++|.++||..|||+|.+||+.++.|+|++++||||||||++|++|+++.+... ...+++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-------~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-------RFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------cCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999998642 246789
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
|||+||++|+.|+.+.++.+.... ++++..++||.+...+...+..+++|+||||++|.+++.++.+.+.++++|||||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999887654 7899999999999988888889999999999999999999888999999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||+|++++|...+..++..++ ...|+++||||+++. ..++..+...+
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~--------~~~q~ll~SAT~~~~~~~l~~~~~~~~ 203 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAP--------ARRQTLLFSATYPEGIAAISQRFQRDP 203 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCC--------cccEEEEEEecCcHHHHHHHHHhcCCC
Confidence 999999999999999999887 578999999999987 56666665543
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-36 Score=313.66 Aligned_cols=205 Identities=28% Similarity=0.389 Sum_probs=180.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.+|++|+|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.+.............+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999876432111122368999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-CCCCCCcceEEEcCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEA 299 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lVlDEa 299 (397)
||+||++|+.|++..+..+....++++..++|+.....+...+..+++|||+||++|++++.+. .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999998888888888999999999999999875 567899999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
|+|++++|...+..|+..++.. ...|+++||||+++. ..+...++.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~------~~~q~ll~SATl~~~v~~l~~~~l~ 215 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPER------GTRQTLLFSATLSHRVLELAYEHMN 215 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccc------cCceEEEEeCCccHHHHHHHHHHhc
Confidence 9999999999999999988732 267999999999987 444444443
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-36 Score=306.51 Aligned_cols=203 Identities=32% Similarity=0.437 Sum_probs=182.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
+|++++|+++++++|.++||..||++|.++|+.++.|+|+|++||||||||++|++|+++.+...... ......+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-AKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-cccCCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999998754321 11223568999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
|+||++||.|+.+.+..+....++.+..++|+.+...+...+...++|+|+||++|++++....+.+.++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999998889999999999998888888888899999999999999998888999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|++++|...+..++..++ ...|+++||||+++. ..+..++..++
T Consensus 161 ll~~~~~~~i~~il~~l~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~ 205 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLP--------AKRQNLLFSATFSDDIKALAEKLLHNP 205 (456)
T ss_pred HhccccHHHHHHHHHhCC--------ccCeEEEEeCCCcHHHHHHHHHHcCCC
Confidence 999999999999998886 577999999999986 66777766544
No 17
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-37 Score=283.17 Aligned_cols=204 Identities=26% Similarity=0.415 Sum_probs=191.7
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
....++.+|+++||.+++++++.+.||++|+.+|+.||++++.|+||+++|.+|+|||.+|.+.+|+.+.-. .
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------~ 93 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------V 93 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-------c
Confidence 445678899999999999999999999999999999999999999999999999999999999999877542 3
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
+..+++||+|||||+.|+...+..++.+.++.+..+.||.+..+....+..|++++.|||||+++++.++.+....++++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkml 173 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKML 173 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|+||||.||+.||..++-.|++.++ +++|++++|||+|.. .+....|+.+|
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp--------~~~Qvv~~SATlp~eilemt~kfmtdp 225 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLP--------PGAQVVLVSATLPHEILEMTEKFMTDP 225 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCC--------CCceEEEEeccCcHHHHHHHHHhcCCc
Confidence 9999999999999999999999998 799999999999988 77777888775
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.8e-36 Score=314.44 Aligned_cols=199 Identities=28% Similarity=0.436 Sum_probs=181.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..+|.+++|++.++++|.++||..|+|+|.++|+.++.|+|+|++||||||||++|++|+++.+... ...+++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-------~~~~~~ 77 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-------LKAPQI 77 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-------cCCCeE
Confidence 4569999999999999999999999999999999999999999999999999999999999988653 246899
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
|||+||++||.|++..+..+.... ++.+..++||.+...+...+..+++|||+||++|++++.++.+.++++++|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999887665 7899999999999888888888999999999999999999989999999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||+|++++|...+..|+..++ ...|+++||||+++. ..+...++.++
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp--------~~~q~llfSAT~p~~i~~i~~~~l~~~ 205 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIP--------EGHQTALFSATMPEAIRRITRRFMKEP 205 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCC--------CCCeEEEEEccCChhHHHHHHHHcCCC
Confidence 999999999999999999887 578999999999988 56666666543
No 19
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=298.58 Aligned_cols=253 Identities=26% Similarity=0.375 Sum_probs=218.2
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCC--C
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--M 212 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~--~ 212 (397)
..+.++.+|++.+|+.++++.+.+.||..|+|||..+||..+..+|+|++|.||||||++|++|++..+..-+.... .
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999987653322 2
Q ss_pred CCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcc
Q 015946 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (397)
Q Consensus 213 ~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~ 292 (397)
.-.+|+++|++|||+|++||...-..+++..+++++.+.||.+..++.-.+..+|+|+|+|||+|++.+.+..+-+..+.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 45699999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred eEEEcCCCccccCCCHHHHHHHHHHhhhhhhcc---------------CC--CCceEEEEeccCCCC-hhHHHhhhhcc-
Q 015946 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKS---------------NG--QGFQTILVTAAIAEL-SSLMECLERDN- 353 (397)
Q Consensus 293 ~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~---------------~~--~~~q~i~~SATl~~~-~~l~~~l~~~~- 353 (397)
+||+||||+|+|+||.+++..||..++....+. +. .-.|+++||||+++. ..+++.|+.+|
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 999999999999999999999999998644331 01 128999999999999 88999998876
Q ss_pred ---CCceeeEEeecCceeeEEeccChHHHHHHHHHHHHcc
Q 015946 354 ---AGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 390 (397)
Q Consensus 354 ---~~~v~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l 390 (397)
++.+..-...+.|. +.. -+.+...++|.+++.+.
T Consensus 479 ~vtig~~gk~~~rveQ~--v~m-~~ed~k~kkL~eil~~~ 515 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQK--VEM-VSEDEKRKKLIEILESN 515 (673)
T ss_pred EEEeccCCCCccchheE--EEE-ecchHHHHHHHHHHHhC
Confidence 34444444445553 222 23455688999999887
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-37 Score=294.86 Aligned_cols=202 Identities=28% Similarity=0.440 Sum_probs=179.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.+|++|||.+.+++++.+.||++||-||..|||.++.|+|+++.|.||||||++|+||+++.+....... ....++.++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeE
Confidence 6899999999999999999999999999999999999999999999999999999999999998765433 345789999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCC--cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCC-CCCCCcceEEEc
Q 015946 221 VLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLD 297 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~-~~l~~l~~lVlD 297 (397)
||+||+|||+|++.++..+..+++ +++.-+....+.......+...++|+|+||++++.++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999999887765 56666666666666667888889999999999999999876 678999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhh
Q 015946 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLER 351 (397)
Q Consensus 298 Eah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~ 351 (397)
|||.|+..||.+++..|.+.|+ +..|.++||||++++..-++.|..
T Consensus 178 EADLllsfGYeedlk~l~~~LP--------r~~Q~~LmSATl~dDv~~LKkL~l 223 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLP--------RIYQCFLMSATLSDDVQALKKLFL 223 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCC--------chhhheeehhhhhhHHHHHHHHhc
Confidence 9999999999999999999999 467999999999999555554443
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-37 Score=301.46 Aligned_cols=249 Identities=26% Similarity=0.408 Sum_probs=207.1
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCC-C
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM-K 213 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~-~ 213 (397)
+-+.++..|.+-.+.+.+...+...||..|||+|+.+||.+..|+|+++||+||||||.+|++|++.++..+...... .
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~ 147 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGES 147 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCccc
Confidence 445567799999999999999999999999999999999999999999999999999999999999999886543222 2
Q ss_pred C--CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 214 P--MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 214 ~--~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
. ..|++||++||||||.|++...+.+.-..+++++..||+.+...+.+.+.++|+|+|+|||+|.+++..+.+.+.++
T Consensus 148 ~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 148 GGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 2 35999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc-----CCceeeEEeec
Q 015946 292 RYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN-----AGKVTAMLLEM 364 (397)
Q Consensus 292 ~~lVlDEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~-----~~~v~~~~~~v 364 (397)
++|||||||+|+| ++|+++++.|+..+... ...+.|+++||||++.. ..++..+..+. ++.+....-.+
T Consensus 228 k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~----~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 228 KFLVLDEADRMLDEMGFEPQIRKIVEQLGMP----PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred cEEEecchHHhhhhccccccHHHHhcccCCC----CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 9999999999999 99999999999988531 12478999999999988 44555555443 34444444444
Q ss_pred CceeeEEeccChHHHHHHHHHHHHcc
Q 015946 365 DQAEVFDLTESQDALKKKVVEAMDSL 390 (397)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~l 390 (397)
.|...+ + ...+++..|++++...
T Consensus 304 ~q~i~~--V-~~~~kr~~Lldll~~~ 326 (482)
T KOG0335|consen 304 TQKILF--V-NEMEKRSKLLDLLNKD 326 (482)
T ss_pred eeEeee--e-cchhhHHHHHHHhhcc
Confidence 443222 2 2345666666666544
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-37 Score=285.90 Aligned_cols=189 Identities=26% Similarity=0.380 Sum_probs=178.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
....|+.|||++|+.+-|+.+|+..|||+|..|||.|+.|+|+|.+|.||||||++|.+|+++.+..++ .+..
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-------~giF 77 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-------YGIF 77 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-------Ccce
Confidence 356799999999999999999999999999999999999999999999999999999999999998854 7899
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC----CCCCCCcceE
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYV 294 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~----~~~l~~l~~l 294 (397)
++|++|||+|+.|+.+.|..+++..++++++++||.+.-.+...+...+||||+||||+.+++..+ ...+++++++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999999999999999999999999999999999999999999999999999999999875 2358899999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
|+||||+|++.+|.+.++.|++.++ ..+|+++||||+++.
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP--------~~RQtLlfSATitd~ 197 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLP--------KPRQTLLFSATITDT 197 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCC--------CccceEEEEeehhhH
Confidence 9999999999999999999999998 467999999999977
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=288.65 Aligned_cols=240 Identities=25% Similarity=0.310 Sum_probs=200.9
Q ss_pred Cccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 136 NAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 136 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
-+.+..+|++ |...+++++.+.+.||.+|||||.+|||.+++|.|++++|.||+|||++|++|-+.++......+. ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~-qr 292 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE-QR 292 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh-cc
Confidence 4667788987 567899999999999999999999999999999999999999999999999999988776544333 44
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.++.+|+++|||+|+.|+.-.+..+ .+.+++..|++||.+...+.+.+.++++|+|+||++|.++...+.+++..+.||
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 6899999999999999997776665 455899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhccCCceeeEE-----eecCcee
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDNAGKVTAML-----LEMDQAE 368 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~~~~v~~~~-----~~v~~~~ 368 (397)
||||||+|||+||.++++.|+-.++ +.+|+++.|||+|+. ..++..|+.++........ ..|.|.
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiR--------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~- 442 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIR--------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQN- 442 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcC--------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeee-
Confidence 9999999999999999999998886 899999999999998 7788888777633332221 233443
Q ss_pred eEEeccChHHHHHHHHHHHH
Q 015946 369 VFDLTESQDALKKKVVEAMD 388 (397)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~ 388 (397)
.++....++..-+...+.
T Consensus 443 --i~v~~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 443 --IIVTTDSEKLEIVQFFVA 460 (629)
T ss_pred --EEecccHHHHHHHHHHHH
Confidence 244444555544444443
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.4e-35 Score=297.42 Aligned_cols=201 Identities=32% Similarity=0.480 Sum_probs=182.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
+|++++|++.++++|.++||..|+++|.++|++++.|+|++++||||+|||++|++|+++.+..... .....+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR---RKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCceEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999875321 1224579999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
|+||++|+.|+++.+..+....++.+..++||.....+...+..+++|+|+||++|++++..+.+.+.++++|||||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999999999999999999999999999999888888888899999999999999999989999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhcc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDN 353 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~ 353 (397)
|++++|...+..|...++ ...|+++||||++.. ..+..++...+
T Consensus 159 ~l~~~~~~~~~~i~~~~~--------~~~q~~~~SAT~~~~~~~~~~~~~~~~~ 204 (434)
T PRK11192 159 MLDMGFAQDIETIAAETR--------WRKQTLLFSATLEGDAVQDFAERLLNDP 204 (434)
T ss_pred HhCCCcHHHHHHHHHhCc--------cccEEEEEEeecCHHHHHHHHHHHccCC
Confidence 999999999999988776 467999999999864 67777776543
No 25
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=291.22 Aligned_cols=250 Identities=26% Similarity=0.472 Sum_probs=210.2
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCC
Q 015946 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (397)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 212 (397)
.+..++++.+|.++.++..+++.|++.|+.+|||||.+.||.+++|+|+|..|-||||||++|.+|++...+...-..+.
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 34667889999999999999999999999999999999999999999999999999999999999999988877665555
Q ss_pred -CCCCCceEEEcCchhHHHHHHHHHHHhhhcC------CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCC
Q 015946 213 -KPMHPRAIVLCTTEESADQGFHMAKFISHCA------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 285 (397)
Q Consensus 213 -~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~ 285 (397)
++.+|..|||||+|+||.|.+..+..+...+ .++.+.+.||.+...+....+.++||+|+|||||.+++....
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 6689999999999999999998877665432 468889999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc----cCCceeeE
Q 015946 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD----NAGKVTAM 360 (397)
Q Consensus 286 ~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~----~~~~v~~~ 360 (397)
+++.-++|+++||||+|+|+||.++++.|+..++ ..+|+++||||+|.- ..|++.-... ++++...-
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK--------~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAA 393 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK--------GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAA 393 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh--------hhhheeeeeccccHHHHHHHHhhcccceEEeccccccc
Confidence 9999999999999999999999999999999998 577999999999987 5555544433 35555555
Q ss_pred EeecCceeeEEeccChHHHHHHHHHHHHcccccCCC
Q 015946 361 LLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 396 (397)
Q Consensus 361 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~ 396 (397)
.++|.|...| + .-..++..++++|.-..|+
T Consensus 394 sldViQevEy--V----kqEaKiVylLeCLQKT~Pp 423 (610)
T KOG0341|consen 394 SLDVIQEVEY--V----KQEAKIVYLLECLQKTSPP 423 (610)
T ss_pred chhHHHHHHH--H----HhhhhhhhHHHHhccCCCc
Confidence 5555554222 1 1123455666666666654
No 26
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=284.08 Aligned_cols=219 Identities=24% Similarity=0.343 Sum_probs=201.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
..|++++|..+++..+.+.||.+|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++.+... ....+++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-------~~~IQ~~ 157 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-------KNVIQAI 157 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-------ccceeEE
Confidence 469999999999999999999999999999999999999999999999999999999999998763 2578999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
|++||||||.|+.+.+..+++..++.++...||++..+.+-++...+|++|+||||+++++..+-..++++.++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999988899999999999999999999998899999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc----------CCceeeEEeecCceee
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN----------AGKVTAMLLEMDQAEV 369 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~----------~~~v~~~~~~v~~~~~ 369 (397)
.|++..|.+.++.++..|+ .+.|++++|||+|-. ..|+..++..| ...|.+++..|.++.+
T Consensus 238 KlLs~~F~~~~e~li~~lP--------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qK 309 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLP--------KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQK 309 (459)
T ss_pred hhhchhhhhHHHHHHHhCC--------ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhh
Confidence 9999999999999999998 688999999999988 88888777665 3567778877777777
Q ss_pred EEecc
Q 015946 370 FDLTE 374 (397)
Q Consensus 370 ~~~~~ 374 (397)
++.+.
T Consensus 310 vhCLn 314 (459)
T KOG0326|consen 310 VHCLN 314 (459)
T ss_pred hhhHH
Confidence 66543
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-34 Score=291.87 Aligned_cols=209 Identities=24% Similarity=0.336 Sum_probs=181.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCC
Q 015946 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 217 (397)
+....|.+++|++.++++|.++||..|+++|.++|++++.|+|+|++||||||||++|++|+++.+.............+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 44668999999999999999999999999999999999999999999999999999999999999876532111112357
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh-cCCccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
++|||+||++|+.|+++.++.+....++.+..++||.....+.+.+ ...++|+|+||++|++++..+...+.++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 9999999999999999999999988899999999998877766655 456899999999999999988889999999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 297 DEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
||||++++++|...+..|++.++. ..+.|++++|||++.. ..++..+...
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~------~~~~q~i~~SAT~~~~~~~~~~~~~~~ 294 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPR------KEERQTLLFSATFTDDVMNLAKQWTTD 294 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCC------CCCceEEEEEeecCHHHHHHHHHhccC
Confidence 999999999999999999988752 1367999999999876 5666665543
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=305.78 Aligned_cols=250 Identities=23% Similarity=0.375 Sum_probs=207.5
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCC
Q 015946 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (397)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 213 (397)
...+.++.+|.+.|++..++..++++||.+|++||.+|||+|++|+|||++|-||||||++|++|++.++.-.+. ...
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~--~~~ 435 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP--LEE 435 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC--hhh
Confidence 355778999999999999999999999999999999999999999999999999999999999999966654332 225
Q ss_pred CCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC---CCCC
Q 015946 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV---SCDD 290 (397)
Q Consensus 214 ~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~---~l~~ 290 (397)
+.||.+||++|||+|+.||.+.++.|...++++++++|||.....++..+++++.|+|||||++++++-.+.. ++.+
T Consensus 436 gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 436 GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 5699999999999999999999999999999999999999999999999999999999999999999866544 4556
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhccCCcee--eEEeecCce
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDNAGKVT--AMLLEMDQA 367 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~~~~v~--~~~~~v~~~ 367 (397)
+.+||+||||+|+++||.+++..|++.++ +..|+++||||++.. ..++...+..|+..+. +.++.-.-.
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nlr--------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNLR--------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVT 587 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhcc--------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccce
Confidence 66999999999999999999999999986 789999999999988 5566655554433211 111222222
Q ss_pred eeEEeccChHHHHHHHHHHHHccccc
Q 015946 368 EVFDLTESQDALKKKVVEAMDSLHLS 393 (397)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~l~~~ 393 (397)
..+.+....+.+-.+|++++....++
T Consensus 588 q~v~V~~~e~eKf~kL~eLl~e~~e~ 613 (997)
T KOG0334|consen 588 QVVRVCAIENEKFLKLLELLGERYED 613 (997)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhhc
Confidence 33434444677888888888765543
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-32 Score=274.51 Aligned_cols=198 Identities=26% Similarity=0.436 Sum_probs=176.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
...+|+++++++.+.++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+... ..+++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-------~~~~~ 98 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-------LNACQ 98 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-------CCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999887532 24678
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+|||+||++|+.|+...+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+...+.++++||+||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 99999999999999999999988888888888999888777777888899999999999999998888899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
||++++++|...+..++..++ +++|++++|||+++. ..+...+..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 224 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLP--------PDVQVALFSATMPNEILELTTKFMR 224 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCC--------CCcEEEEEEecCCHHHHHHHHHHcC
Confidence 999999999988888888775 578999999999987 444544443
No 30
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3e-32 Score=247.65 Aligned_cols=196 Identities=31% Similarity=0.504 Sum_probs=175.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEE
Q 015946 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL 222 (397)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl 222 (397)
|+++++++.+.+.|.++|+..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.... ...++++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999988742 1247899999
Q ss_pred cCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 223 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 223 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
+||++|+.|+...+..+....++.+..++|+.........+..+++|+|+||++|.+++.++...+.+++++|+||+|.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999999887889999999998887777777777999999999999999988888999999999999999
Q ss_pred ccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 303 l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
.+.+|+..+..++..+. ..+|++++|||+++. .++...+..
T Consensus 156 ~~~~~~~~~~~~~~~l~--------~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 156 LDMGFEDQIREILKLLP--------KDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred hccChHHHHHHHHHhCC--------cccEEEEEeccCCHHHHHHHHHHCC
Confidence 98889999999999876 478999999999976 444444433
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=267.57 Aligned_cols=195 Identities=31% Similarity=0.496 Sum_probs=182.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
...|..+||+..+.+++++-||..|||+|+.+||.++.|+|++..|.||||||.||+||+++.+.... ..+.++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc------ccccce
Confidence 56799999999999999999999999999999999999999999999999999999999999998753 257899
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
++++|||+|+.|.....+.+++.+++++.+++||....++...+..++|||++|||+++.+.-.-.+.++.+.|||+|||
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999989999999999999887776688999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHh
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMEC 348 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~ 348 (397)
|.++++||.+++..++.+++ .+.|+++||||+|.. .++++.
T Consensus 174 drlfemgfqeql~e~l~rl~--------~~~QTllfSatlp~~lv~faka 215 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLP--------ESRQTLLFSATLPRDLVDFAKA 215 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCC--------CcceEEEEeccCchhhHHHHHc
Confidence 99999999999999999998 467999999999987 555553
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-33 Score=264.67 Aligned_cols=226 Identities=24% Similarity=0.408 Sum_probs=199.4
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
+..+...+|++++|++.+++++...||++|+.||+.||.++..|.|+++++++|+|||.+|.+++++.+... .
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-------~ 92 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-------V 92 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-------h
Confidence 344557799999999999999999999999999999999999999999999999999999999999988543 2
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH-hcCCccEEEeChHHHHHHHhcCCCCCCCcce
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV-SNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 293 (397)
...+||+++|||+|+.|+......++...++.+..+.||.+...+... ....++|+||||||+.+++..+.+....+++
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeE
Confidence 577999999999999999999999999999999999999888755444 4456899999999999999999888899999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc-----------CCceeeEE
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN-----------AGKVTAML 361 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~-----------~~~v~~~~ 361 (397)
+|+||||.|+..||.+++..|++.++ .+.|++++|||++.. ..+.+.++.+| ...+.+++
T Consensus 173 fvlDEaDEmLs~gfkdqI~~if~~lp--------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~ 244 (397)
T KOG0327|consen 173 FVLDEADEMLSRGFKDQIYDIFQELP--------SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFY 244 (397)
T ss_pred EeecchHhhhccchHHHHHHHHHHcC--------cchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeee
Confidence 99999999999999999999999998 688999999999998 77888887765 35666777
Q ss_pred eecCceeeEEeccC
Q 015946 362 LEMDQAEVFDLTES 375 (397)
Q Consensus 362 ~~v~~~~~~~~~~~ 375 (397)
..+.+..++..++.
T Consensus 245 i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 245 INVEKEEKLDTLCD 258 (397)
T ss_pred eeccccccccHHHH
Confidence 77777776655543
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.3e-31 Score=283.53 Aligned_cols=195 Identities=21% Similarity=0.322 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 147 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
.+++.+.++|.++||..||++|.++|+.++.|+|+++++|||||||+||++|+++.+... .++++|||+||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~--------~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD--------PRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC--------CCcEEEEEcChH
Confidence 388999999999999999999999999999999999999999999999999999998753 367999999999
Q ss_pred hHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC----CCCCCCcceEEEcCCCcc
Q 015946 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 227 eLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~----~~~l~~l~~lVlDEah~~ 302 (397)
+|+.|+...++.+. ..++++..+.|+.+... ...+..+++|+|+||++|...+... ...++++++|||||||.|
T Consensus 92 aLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 92 ALAADQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 99999999999887 45788888888877544 4456667999999999997543221 223789999999999999
Q ss_pred ccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 303 l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
.+ .|+..+..+++++++.+.. .+.++|+|++|||++++.+++.++...+
T Consensus 170 ~g-~fg~~~~~il~rL~ri~~~-~g~~~q~i~~SATi~n~~~~~~~l~g~~ 218 (742)
T TIGR03817 170 RG-VFGSHVALVLRRLRRLCAR-YGASPVFVLASATTADPAAAASRLIGAP 218 (742)
T ss_pred cC-ccHHHHHHHHHHHHHHHHh-cCCCCEEEEEecCCCCHHHHHHHHcCCC
Confidence 65 5999999999998766532 3457899999999999988888887755
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=9.7e-33 Score=247.85 Aligned_cols=234 Identities=23% Similarity=0.341 Sum_probs=199.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
.+.|.+|-|.+++++++.++||.+|+.+|.++||...-|.|++.+|.+|.|||.+|.+..++++.-- .....+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-------~g~vsv 113 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-------DGQVSV 113 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-------CCeEEE
Confidence 4569999999999999999999999999999999999999999999999999999999999987642 246689
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+++|.||+||.|+.....++.++. ++++.+++||.+.....+.+.++++|+||||||++.+.+++.+++++++++|+||
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDE 193 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhh
Confidence 999999999999999999998887 6899999999999999999999999999999999999999999999999999999
Q ss_pred CCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc----CCceeeEEeecCceeeEEe
Q 015946 299 ADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN----AGKVTAMLLEMDQAEVFDL 372 (397)
Q Consensus 299 ah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~----~~~v~~~~~~v~~~~~~~~ 372 (397)
||.|+++ ..+.+++.|++..+ ..-|+++||||++.. ..+...++-+| +..-....+...|.+.+.+
T Consensus 194 cdkmle~lDMrRDvQEifr~tp--------~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkL 265 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKL 265 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc--------ccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhh
Confidence 9999876 47888999998877 578999999999998 55666666554 3444444455555544444
Q ss_pred ccChHHHHHHHHHHHHcc
Q 015946 373 TESQDALKKKVVEAMDSL 390 (397)
Q Consensus 373 ~~~~~~~~~~l~~~~~~l 390 (397)
.+ ..+.+++.++++.|
T Consensus 266 ke--~eKNrkl~dLLd~L 281 (387)
T KOG0329|consen 266 KE--NEKNRKLNDLLDVL 281 (387)
T ss_pred hh--hhhhhhhhhhhhhh
Confidence 33 45666667777666
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=9.7e-32 Score=266.78 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=181.8
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
+.....|+++.|...++.+|+..||..||++|..|||+++.+.|+||+|..|+|||++|.+.+++.+..+ ...
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-------~~~ 93 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-------SSH 93 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-------cCc
Confidence 3346689999999999999999999999999999999999999999999999999999999999988653 368
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhh-cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISH-CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
++++||+|||+++.||...+..++. ..|++|.++.||+........++. ++|+|||||||.+++..+.++.++|+++|
T Consensus 94 ~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfV 172 (980)
T KOG4284|consen 94 IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFV 172 (980)
T ss_pred ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEE
Confidence 8999999999999999999988876 448999999999998877666655 78999999999999999999999999999
Q ss_pred EcCCCccccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 296 LDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 296 lDEah~~l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|||||.+++.+ |.+++..|+..|+ ...|+++||||.+.. ..++..++.++
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP--------~~rQv~a~SATYp~nLdn~Lsk~mrdp 224 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLP--------QIRQVAAFSATYPRNLDNLLSKFMRDP 224 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcc--------hhheeeEEeccCchhHHHHHHHHhccc
Confidence 99999999955 9999999999999 577999999999988 77777777775
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=7.6e-31 Score=281.18 Aligned_cols=192 Identities=21% Similarity=0.288 Sum_probs=169.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.|++++|++.+++++.+.||..|+|+|.+|++. +..|+|++++||||||||++|.+|++..+.. +.++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----------CCcEE
Confidence 589999999999999999999999999999998 7789999999999999999999999998852 56899
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
||+||++||.|++..++.+.. .++++..++|+...... ....++|+|+||+++..++.++...+.++++||+||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 999999999999999987654 48899999998754432 22347999999999999988766678999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
.+.+.++++.++.++.++.... +++|+|++|||++|..++..|+...
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~-----~~~qii~lSATl~n~~~la~wl~~~ 194 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLN-----PDLQVVALSATIGNADELADWLDAE 194 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcC-----CCCcEEEEcccCCCHHHHHHHhCCC
Confidence 9998899999999999887533 6789999999999999999999753
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=5.8e-30 Score=273.76 Aligned_cols=190 Identities=22% Similarity=0.251 Sum_probs=168.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.|+++++++.+++.+.+.||..|+|+|.++|+. ++.|+|++++||||||||++|.+|++..+.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 688999999999999999999999999999986 7899999999999999999999999998764 356899
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
||+|+++|+.|++..+..+. ..++++..++|+...... ....++|+|+||+++..++.++...++++++||+||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 99999999999999888764 358899999998765432 22458999999999999888776678999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
.+.+.+++..++.++..+. .++|+|++|||++|..+++.|+...
T Consensus 149 ~l~~~~rg~~le~il~~l~--------~~~qiI~lSATl~n~~~la~wl~~~ 192 (720)
T PRK00254 149 LIGSYDRGATLEMILTHML--------GRAQILGLSATVGNAEELAEWLNAE 192 (720)
T ss_pred ccCCccchHHHHHHHHhcC--------cCCcEEEEEccCCCHHHHHHHhCCc
Confidence 9998899999999999875 4789999999999999999998753
No 38
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=262.38 Aligned_cols=198 Identities=19% Similarity=0.238 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
|++.+.+++... |..||+.|.+|||.+.+|+|+|++||||||||++..+|++..+.... .+....+..+|||+|.++
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCcHHH
Confidence 689999999988 99999999999999999999999999999999999999999998863 112335789999999999
Q ss_pred HHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC--CCCCcceEEEcCCCccccC
Q 015946 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 228 La~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~--~l~~l~~lVlDEah~~l~~ 305 (397)
|.+++.+.+...+...|+.+...+|+++.....+...++|||||+||+.|.-++....+ .|.+++++||||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999888766433 5899999999999999999
Q ss_pred CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 306 ~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
..+.++..-+.+|.... ++.|.|++|||..++.++++||....
T Consensus 165 KRG~~Lsl~LeRL~~l~-----~~~qRIGLSATV~~~~~varfL~g~~ 207 (814)
T COG1201 165 KRGVQLALSLERLRELA-----GDFQRIGLSATVGPPEEVAKFLVGFG 207 (814)
T ss_pred ccchhhhhhHHHHHhhC-----cccEEEeehhccCCHHHHHHHhcCCC
Confidence 99999999999998765 48999999999999999999999875
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.8e-30 Score=241.32 Aligned_cols=239 Identities=25% Similarity=0.341 Sum_probs=194.0
Q ss_pred ccCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhcccc
Q 015946 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL 209 (397)
Q Consensus 132 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~ 209 (397)
+.+++.....+|++|+|.+++++++..|||.+|+.||..|+|.++.. +|+|.++.+|+|||.||.+.+|.++..+.
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~-- 158 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV-- 158 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--
Confidence 35566677899999999999999999999999999999999999975 69999999999999999999999887643
Q ss_pred CCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCC
Q 015946 210 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSC 288 (397)
Q Consensus 210 ~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l 288 (397)
..|+++.|+|||+||.|+.+.+...+++.+++..+.+.+.....- ..+ ..+|+|||||.+++++.. ..+.+
T Consensus 159 -----~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~ 230 (477)
T KOG0332|consen 159 -----VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDL 230 (477)
T ss_pred -----cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhCh
Confidence 689999999999999999999999999998888887766521111 011 148999999999999988 88899
Q ss_pred CCcceEEEcCCCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc-CCceeeEEeecC
Q 015946 289 DDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN-AGKVTAMLLEMD 365 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~-~~~v~~~~~~v~ 365 (397)
..++.+|+||||.|++. ||+++-..|.+.++ +++|+++||||+... ..|+..+..++ ...+..-.+.+.
T Consensus 231 ~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP--------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 231 EKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP--------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred hhceEEEecchhhhhhcccccccchhhhhhcC--------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 99999999999999987 69999999999997 589999999999988 77777777664 344444444444
Q ss_pred ceeeEEeccChH-HHHHHHHHHHH
Q 015946 366 QAEVFDLTESQD-ALKKKVVEAMD 388 (397)
Q Consensus 366 ~~~~~~~~~~~~-~~~~~l~~~~~ 388 (397)
.-..+.+.|..+ ++-..|.+++.
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg 326 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYG 326 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHh
Confidence 444455555444 44444545443
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.7e-29 Score=243.73 Aligned_cols=186 Identities=25% Similarity=0.384 Sum_probs=154.9
Q ss_pred hhhhccCCCcccccccccCCCCHHHH----------HHHHHCCCCCCcHHHHHHHHHHh---------CCCcEEEEcCCC
Q 015946 128 EREKSSGSNAEVVSSFQELGLKAEMI----------KAVEKMGLFVPSEIQCVGIPAVL---------NGKSVVLSSGSG 188 (397)
Q Consensus 128 ~~~~~~~~~~~~~~~f~~l~l~~~l~----------~~l~~~g~~~~~~iQ~~ai~~i~---------~g~dvlv~apTG 188 (397)
|......-......-|+.+++++.+. +++..++++..+|+|..++|.++ .++|++|.||||
T Consensus 114 wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG 193 (620)
T KOG0350|consen 114 WVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG 193 (620)
T ss_pred cccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCC
Confidence 33333333444455688888776554 44899999999999999999885 368999999999
Q ss_pred CchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCC--
Q 015946 189 SGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP-- 266 (397)
Q Consensus 189 sGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-- 266 (397)
||||+||.|||++.+..... +..+||||+||++|+.|+++.|..+....|+.|+.+.|..+.....+.+.+.
T Consensus 194 SGKTLaY~iPIVQ~L~~R~v------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~ 267 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSSRPV------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP 267 (620)
T ss_pred CCceeeehhHHHHHHccCCc------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC
Confidence 99999999999999877432 4579999999999999999999999999999999999998887777666542
Q ss_pred ---ccEEEeChHHHHHHHhc-CCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 267 ---IGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 267 ---~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+||||+|||||.+|+.+ ..+++.+++|+||||||+|++..|..++..++..+.
T Consensus 268 ~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~ 324 (620)
T KOG0350|consen 268 ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCK 324 (620)
T ss_pred ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhC
Confidence 49999999999999995 789999999999999999999888887766665544
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=2.2e-28 Score=265.35 Aligned_cols=199 Identities=22% Similarity=0.262 Sum_probs=165.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
+++.+.+++.+ +|..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+...... +....++++|||+||++
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-GELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-cCCCCCeEEEEEcCHHH
Confidence 56777788776 79999999999999999999999999999999999999999988753211 11124678999999999
Q ss_pred HHHHHHHHHHH-------hh----hcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC--CCCCcce
Q 015946 228 SADQGFHMAKF-------IS----HCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRY 293 (397)
Q Consensus 228 La~Qv~~~~~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~--~l~~l~~ 293 (397)
|+.|+++.+.. +. ... ++++.+.+|+.+.......+.++++|+|+||++|..++....+ .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99998875542 21 222 6788999999998888888888899999999999888866543 4789999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
|||||+|.|++..++..+..++.++.... +..+|+|++|||+++...++.|+...
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----~~~~q~IglSATl~~~~~va~~L~~~ 230 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELA----GGEFVRIGLSATIEPLEEVAKFLVGY 230 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhc----CCCCeEEEEecccCCHHHHHHHhcCc
Confidence 99999999998889999999888887543 25789999999999998999988753
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=2.3e-28 Score=260.07 Aligned_cols=191 Identities=15% Similarity=0.217 Sum_probs=166.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
.|++++|++.+++.+...||. ++++|.++++.+..|+|++++||||||||+++.++++..+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEE
Confidence 588999999999999999996 999999999999999999999999999999999999987753 468999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
|+|+++||.|+++.+..+. ..++++...+|+...... . ...++|+|+||+++..++.++...+.++++||+||||.
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~--~-~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--F-IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh--h-hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999998764 357888888887654332 2 23579999999999998888777789999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
+.+.+++..++.++..++... ++.|+|++|||++|..+++.|+...
T Consensus 147 l~d~~rg~~le~ll~~~~~~~-----~~~riI~lSATl~n~~~la~wl~~~ 192 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVN-----PDARILALSATVSNANELAQWLNAS 192 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcC-----cCCcEEEEeCccCCHHHHHHHhCCC
Confidence 998889999999988776432 5789999999999999999998653
No 43
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=4.4e-28 Score=213.28 Aligned_cols=162 Identities=28% Similarity=0.483 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCC
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~ 244 (397)
||+|.++|+.+.+|+++++.||||+|||++|+++++..+... ...++||++|+++|+.|++..+..+....+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--------KDARVLIIVPTRALAEQQFERLRKFFSNTN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--------SSSEEEEEESSHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--------CCceEEEEeecccccccccccccccccccc
Confidence 689999999999999999999999999999999999988763 245999999999999999999999988888
Q ss_pred cceeeecCCCChH-HHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhh
Q 015946 245 LDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 323 (397)
Q Consensus 245 ~~v~~~~g~~~~~-~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~ 323 (397)
+++..++|+.... .....+.++++|+|+||++|.+++..+..++.++++||+||+|.+.++++...+..|+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~-- 150 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF-- 150 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT--
T ss_pred cccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC--
Confidence 8999999988865 4445566779999999999999999866677789999999999999888899999999988642
Q ss_pred ccCCCCceEEEEeccCC
Q 015946 324 KSNGQGFQTILVTAAIA 340 (397)
Q Consensus 324 ~~~~~~~q~i~~SATl~ 340 (397)
.+.|++++|||++
T Consensus 151 ----~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 151 ----KNIQIILLSATLP 163 (169)
T ss_dssp ----TTSEEEEEESSST
T ss_pred ----CCCcEEEEeeCCC
Confidence 2689999999998
No 44
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=6.6e-26 Score=243.03 Aligned_cols=197 Identities=23% Similarity=0.329 Sum_probs=172.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 149 KAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 149 ~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
...+..++.+.|+..|+.+|.+|+..+.+|+|+||+++||||||++|++||++.+.++. .-++|||.||++|
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--------~a~AL~lYPtnAL 127 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--------SARALLLYPTNAL 127 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc--------CccEEEEechhhh
Confidence 34457888899999999999999999999999999999999999999999999999863 3389999999999
Q ss_pred HHHHHHHHHHhhhcCC--cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC----CCCCCCcceEEEcCCCcc
Q 015946 229 ADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 229 a~Qv~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~----~~~l~~l~~lVlDEah~~ 302 (397)
|+++.+.+..+....+ +.+..+.|++........+.++++||++||.+|..++.++ ...+.+++||||||+|.+
T Consensus 128 a~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 128 ANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 9999999999888777 8888999999988887888999999999999998866543 345788999999999987
Q ss_pred ccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhccCCc
Q 015946 303 FDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGK 356 (397)
Q Consensus 303 l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~ 356 (397)
.| |+..|..++++|.+.+ +..+.++|+|+.|||+.++.+++..+...+...
T Consensus 208 --rGv~GS~vA~llRRL~~~~-~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~ 259 (851)
T COG1205 208 --RGVQGSEVALLLRRLLRRL-RRYGSPLQIICTSATLANPGEFAEELFGRDFEV 259 (851)
T ss_pred --cccchhHHHHHHHHHHHHH-hccCCCceEEEEeccccChHHHHHHhcCCccee
Confidence 55 9999999999998766 344568999999999999999998888776555
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=2.2e-25 Score=238.62 Aligned_cols=189 Identities=18% Similarity=0.206 Sum_probs=143.7
Q ss_pred ccc--cCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 142 SFQ--ELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 142 ~f~--~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
.|. .|+....+...++. +||..++|+|.++|++++.|+|+++++|||+|||+||++|++. .++.
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~-------------~~Gi 502 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI-------------CPGI 502 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH-------------cCCc
Confidence 355 35555667777664 7999999999999999999999999999999999999999985 2458
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhc------CCccEEEeChHHHHH--HHhcC---CCC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN------APIGMLIATPSEVLQ--HIEDR---NVS 287 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~IlV~TP~~L~~--~l~~~---~~~ 287 (397)
+|||+|+++|+.++...+.. .++.+..+.|+.....+...+. ..++|||+||++|.. .+.+. ...
T Consensus 503 TLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999999855444443 3788888999888776654432 468999999999853 22211 112
Q ss_pred CCCcceEEEcCCCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhcc
Q 015946 288 CDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDN 353 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~ 353 (397)
...+.+|||||||++++|| |++.+..+-. +.... +++|+++||||++.. .++...|....
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~-Lr~~f-----p~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGI-LKQKF-----PNIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHH-HHHhC-----CCCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 3558999999999999998 8888876422 22111 578999999999987 66777765443
No 46
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=228.13 Aligned_cols=244 Identities=22% Similarity=0.308 Sum_probs=190.2
Q ss_pred Cccccccccc----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCC
Q 015946 136 NAEVVSSFQE----LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211 (397)
Q Consensus 136 ~~~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 211 (397)
.+.++.+|.+ +.++..+++.+...||..|+|+|.+|||.++.++|+++|||||||||++|.+|+++++..... .
T Consensus 127 ~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--~ 204 (593)
T KOG0344|consen 127 LPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--E 204 (593)
T ss_pred CCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc--c
Confidence 4677888987 678999999999999999999999999999999999999999999999999999999987542 1
Q ss_pred CCCCCCceEEEcCchhHHHHHHHHHHHhh--hcCCcceeeecCCCCh-HHHHHHhcCCccEEEeChHHHHHHHhcCC--C
Q 015946 212 MKPMHPRAIVLCTTEESADQGFHMAKFIS--HCARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRN--V 286 (397)
Q Consensus 212 ~~~~~~~~lvl~PtreLa~Qv~~~~~~~~--~~~~~~v~~~~g~~~~-~~~~~~~~~~~~IlV~TP~~L~~~l~~~~--~ 286 (397)
....+.+++|+.|||+|+.|+++.+..+. ...++++..+...... ..........++|+|+||-++..++..+. +
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~i 284 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNI 284 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccc
Confidence 13467899999999999999999999998 5555555544433221 22222333457999999999999998875 7
Q ss_pred CCCCcceEEEcCCCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhccCCceee----E
Q 015946 287 SCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDNAGKVTA----M 360 (397)
Q Consensus 287 ~l~~l~~lVlDEah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~~~~v~~----~ 360 (397)
++..|.++|+||+|.+++. .|..++..|+..+.. +.+.+-+||||++.. .+++.....+....+-. .
T Consensus 285 dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa 357 (593)
T KOG0344|consen 285 DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA 357 (593)
T ss_pred hhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH
Confidence 8999999999999999999 899999999998863 788999999999987 55555444443222222 1
Q ss_pred EeecCceeeEEeccChHHHHHHHHHHHHcc
Q 015946 361 LLEMDQAEVFDLTESQDALKKKVVEAMDSL 390 (397)
Q Consensus 361 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l 390 (397)
...|.|...|.- +......++.++++.+
T Consensus 358 ~~~V~QelvF~g--se~~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 358 NETVDQELVFCG--SEKGKLLALRQLVASG 385 (593)
T ss_pred hhhhhhhheeee--cchhHHHHHHHHHhcc
Confidence 245666655533 3456667777777766
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=3.1e-25 Score=233.97 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=138.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE-EcCchhHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV-LCTTEESADQGFHMA 236 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv-l~PtreLa~Qv~~~~ 236 (397)
.||. |||||.++|+.++.|+ ++++++|||||||.+|+++++.. .. ....++.|| ++|||+|+.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-------~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-------GAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-------cccccceEEEeCchHHHHHHHHHHH
Confidence 5997 9999999999999998 58888999999999877666532 11 123555555 679999999999999
Q ss_pred HHhhhcC-----------------------CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-------
Q 015946 237 KFISHCA-----------------------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV------- 286 (397)
Q Consensus 237 ~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~------- 286 (397)
..++... ++++.+++||.+...+...+..+++|||||+ +++.++.+
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~ 158 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccc
Confidence 9888754 4788999999999999999999999999995 55555444
Q ss_pred ---------CCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 287 ---------SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 287 ---------~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
.+.++++||||||| ++++|.+.+..|++.+... ....++|+++||||++.. .++...++..
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp---~~~rprQtLLFSAT~p~ei~~l~~~~~~~ 229 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP---PDFLPLRVVELTATSRTDGPDRTTLLSAE 229 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC---cccccceEEEEecCCCccHHHHHHHHccC
Confidence 26889999999999 6799999999999975210 001237999999999876 4555555533
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=5.5e-25 Score=242.60 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=138.9
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 151 EMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 151 ~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
++.+.+.+ .|+ .|+++|..+++.++.|+|++++||||||||+ |+++++..+.. .++++|||+||++|+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---------~g~~alIL~PTreLa 136 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK---------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeccHHHH
Confidence 34445544 488 8999999999999999999999999999996 55665555433 478999999999999
Q ss_pred HHHHHHHHHhhhcCCcceeeecCCCCh-----HHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccc
Q 015946 230 DQGFHMAKFISHCARLDSSMENGGVSS-----KALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 230 ~Qv~~~~~~~~~~~~~~v~~~~g~~~~-----~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l 303 (397)
.|++..++.++...++.+..++|+.+. ..+...+. ..++|+|+||++|.+++. .+....+++|||||||+|+
T Consensus 137 ~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999999888888877776542 22223333 458999999999999887 4556679999999999999
Q ss_pred c-----------CCCH-HHHHHHHHHhhhhh----------------hccCCCCceEEEEeccCCCC
Q 015946 304 D-----------RGFG-PEISKILNPLKDSA----------------LKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 304 ~-----------~~f~-~~l~~il~~l~~~~----------------~~~~~~~~q~i~~SATl~~~ 342 (397)
+ .||. +++..++..++... ....+...|+++||||+++.
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~ 281 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR 281 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc
Confidence 6 6784 67888887775200 00011268999999999864
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=5.8e-25 Score=224.63 Aligned_cols=171 Identities=19% Similarity=0.260 Sum_probs=133.5
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.+||..|+|+|.++|++++.|+|+++++|||+|||++|++|++. .+..+|||+||++|+.|+...+.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-------------~~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-------------SDGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-------------cCCcEEEEecHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999985 24579999999999999888776
Q ss_pred HhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHh-cCCC-CCCCcceEEEcCCCccccCC--CHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIE-DRNV-SCDDIRYVVLDEADTLFDRG--FGP 309 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~-~~~~-~l~~l~~lVlDEah~~l~~~--f~~ 309 (397)
.+ ++.+..+.++.....+... ....++|+++||+++..... ...+ ...++++|||||||++++|| |.+
T Consensus 73 ~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 73 AS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 54 6777778777765543322 24458999999999754321 1112 56889999999999999987 777
Q ss_pred HHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhh
Q 015946 310 EISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLER 351 (397)
Q Consensus 310 ~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~ 351 (397)
.+..+..... .. ++.|++++|||+++. .++..++..
T Consensus 149 ~~~~l~~l~~-~~-----~~~~~l~lTAT~~~~~~~di~~~l~l 186 (470)
T TIGR00614 149 DYKALGSLKQ-KF-----PNVPIMALTATASPSVREDILRQLNL 186 (470)
T ss_pred HHHHHHHHHH-Hc-----CCCceEEEecCCCHHHHHHHHHHcCC
Confidence 7766533222 11 578999999999987 566666654
No 50
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=236.27 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 147 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
.+.+.+.+.+...|+..+++-|+.++.... .|+|+|+|+|||||||+++++.++..+.. .+.++|||||+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivPl 85 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVPL 85 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeCh
Confidence 367788888888999899999998887654 56999999999999999999999999986 36799999999
Q ss_pred hhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC
Q 015946 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 226 reLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~ 305 (397)
++||.+.++.++. ....|++|...+|+...... .+ .+++|+|+||+++-.++++....+..+++|||||+|.+.|.
T Consensus 86 kALa~Ek~~~~~~-~~~~GirV~~~TgD~~~~~~--~l-~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 86 KALAEEKYEEFSR-LEELGIRVGISTGDYDLDDE--RL-ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHHHhhh-HHhcCCEEEEecCCcccchh--hh-ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 9999999999994 35569999999999886552 22 34899999999998888887778899999999999988877
Q ss_pred CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhccC
Q 015946 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNA 354 (397)
Q Consensus 306 ~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~ 354 (397)
.+++.++.|+.+++..+ ..+|++++|||++|..+++.|+...+.
T Consensus 162 ~RG~~lE~iv~r~~~~~-----~~~rivgLSATlpN~~evA~wL~a~~~ 205 (766)
T COG1204 162 TRGPVLESIVARMRRLN-----ELIRIVGLSATLPNAEEVADWLNAKLV 205 (766)
T ss_pred ccCceehhHHHHHHhhC-----cceEEEEEeeecCCHHHHHHHhCCccc
Confidence 79999999999998755 568999999999999999999998753
No 51
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=6e-24 Score=223.03 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=141.0
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 154 KAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 154 ~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
+.|++ +||..++++|.++|++++.|+|+++++|||+|||++|++|++. .+..+|||+|+++|+.|+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~-------------~~g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL-------------LKGLTVVISPLISLMKDQ 69 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH-------------cCCcEEEEcCCHHHHHHH
Confidence 34554 7999999999999999999999999999999999999999984 244789999999999998
Q ss_pred HHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC--
Q 015946 233 FHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-- 306 (397)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-- 306 (397)
...++.+ ++.+..++++......... ....++|+++||++|........+...++.+|||||||++.+||
T Consensus 70 ~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 70 VDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCc
Confidence 8887764 6778888888776654432 34568999999999965443334456789999999999999987
Q ss_pred CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhcc
Q 015946 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDN 353 (397)
Q Consensus 307 f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~ 353 (397)
|.+.+..+....... ++.+++++|||.+.. .++..++...+
T Consensus 146 frp~y~~l~~l~~~~------~~~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 146 FRPEYQRLGSLAERF------PQVPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred cHHHHHHHHHHHHhC------CCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 888877766544321 356799999999987 56777775443
No 52
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.7e-24 Score=225.35 Aligned_cols=194 Identities=14% Similarity=0.179 Sum_probs=160.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~i~~-g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
.-++|..+..+|..++|.+.. +.|+|||||||+|||..|++.||..+.......-......++|||+|+++||..+.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 346788999999999998874 6699999999999999999999999987443333455678999999999999999988
Q ss_pred HHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC----CCCCcceEEEcCCCccccCCCHHHH
Q 015946 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV----SCDDIRYVVLDEADTLFDRGFGPEI 311 (397)
Q Consensus 236 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~----~l~~l~~lVlDEah~~l~~~f~~~l 311 (397)
+..-....|+.|..++|++...... . ..++|||+||+.+ |.+.+... .++.+++|||||+| ||...+|+.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 8776667799999999998766544 2 2389999999994 66665332 36889999999999 5567789999
Q ss_pred HHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhccCCc
Q 015946 312 SKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGK 356 (397)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~ 356 (397)
+.|+.++.+... .+...+++|++|||+||..+++.||..++...
T Consensus 259 EtiVaRtlr~ve-ssqs~IRivgLSATlPN~eDvA~fL~vn~~~g 302 (1230)
T KOG0952|consen 259 ETIVARTLRLVE-SSQSMIRIVGLSATLPNYEDVARFLRVNPYAG 302 (1230)
T ss_pred HHHHHHHHHHHH-hhhhheEEEEeeccCCCHHHHHHHhcCCCccc
Confidence 999999986553 44468999999999999999999999875443
No 53
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=2.2e-23 Score=234.71 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=139.9
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 150 AEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 150 ~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
.++.+.+++ +|| .|+++|+.+|+.++.|+|++++||||||||++++++++.... .+.++|||+||++|
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~----------~g~~aLVl~PTreL 134 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL----------KGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh----------cCCeEEEEECHHHH
Confidence 456667776 799 699999999999999999999999999999977766654422 36789999999999
Q ss_pred HHHHHHHHHHhhhcC--CcceeeecCCCChHHHHHH---hc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 229 ADQGFHMAKFISHCA--RLDSSMENGGVSSKALEDV---SN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 229 a~Qv~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
+.|++..++.++... ++.+..++|+.+...+... +. +.++|||+||++|.+++... . ..++++|||||||+|
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceec
Confidence 999999999988765 4567788899887765432 33 35899999999998877642 2 277999999999999
Q ss_pred cc-----------CCCHHHHHH----HHHH---------------hhhhhhccCCCCce-EEEEeccCCCChhHHHhh
Q 015946 303 FD-----------RGFGPEISK----ILNP---------------LKDSALKSNGQGFQ-TILVTAAIAELSSLMECL 349 (397)
Q Consensus 303 l~-----------~~f~~~l~~----il~~---------------l~~~~~~~~~~~~q-~i~~SATl~~~~~l~~~l 349 (397)
++ .||.+++.. |+.. +..... ..+...| ++++|||++...+....+
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ll~~SAT~~~r~~~~~l~ 289 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE-KIGNKIGCLIVASATGKAKGDRVKLY 289 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh-hcCCCccEEEEEecCCCchhHHHHHh
Confidence 87 489888875 4321 111000 1123445 678999999764444433
No 54
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=2.8e-23 Score=229.34 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=123.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 150 ~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
.++.+.+.+.....|+++|+.+++.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHH
Confidence 34556666544447999999999999999999999999999997 77777766543 368999999999999
Q ss_pred HHHHHHHHHhhhcCCccee---eecCCCChHHHHH---Hh-cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 230 DQGFHMAKFISHCARLDSS---MENGGVSSKALED---VS-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 230 ~Qv~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~---~~-~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
.|++..+..+....++.+. +++|+.+...+.. .+ .++++|||+||++|.+++..-. . +++++||||||+|
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDAL 211 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhh
Confidence 9999999999887776543 5778887766433 23 3459999999999998876521 2 8999999999999
Q ss_pred cc-----------CCCHHH-HHHHHHH
Q 015946 303 FD-----------RGFGPE-ISKILNP 317 (397)
Q Consensus 303 l~-----------~~f~~~-l~~il~~ 317 (397)
++ .||.++ +..|+..
T Consensus 212 L~~~k~vd~il~llGF~~e~i~~il~~ 238 (1171)
T TIGR01054 212 LKASKNVDKLLKLLGFSEELIEKAWKL 238 (1171)
T ss_pred hhccccHHHHHHHcCCCHHHHHHHHHH
Confidence 98 678764 6666543
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.91 E-value=8.6e-24 Score=208.49 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=174.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
....+++++++.+.+.|...|++.+.|+|..++.+ ++.|.|++|+++|+||||++.-+.-+..++. .+.+
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~K 263 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKK 263 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCe
Confidence 45678899999999999999999999999999987 7899999999999999999999999888886 4779
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH----HhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.|||+|..+||+|-++.|+.-...+++.+..-+|......... .....+||||||.+-+-.+++.+ -.+.++..|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 9999999999999999998888888999888887655444321 12235799999999987777776 678999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
||||+|.+-|..+++-+.-++.+|+..+ +..|+|.+|||+.|+.++++.|....
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~-----~~AQ~i~LSATVgNp~elA~~l~a~l 396 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLF-----PGAQFIYLSATVGNPEELAKKLGAKL 396 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhC-----CCCeEEEEEeecCChHHHHHHhCCee
Confidence 9999998877789999999999998877 78999999999999999999987653
No 56
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=1.7e-23 Score=219.60 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=137.8
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 148 LKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 148 l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
+.....+.|++ +||..++|+|.++|++++.|+|+++++|||+|||++|++|++. ....+|||+|++
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~-------------~~g~tlVisPl~ 75 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV-------------LDGLTLVVSPLI 75 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH-------------cCCCEEEEecHH
Confidence 34444555654 6999999999999999999999999999999999999999984 244799999999
Q ss_pred hHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 227 eLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
+|+.|+...+..+ ++.+.++.++......... .....+|+++||+++........+...++++|||||||++
T Consensus 76 sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 76 SLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999988877764 6777777777665544332 2345799999999987432222334567999999999999
Q ss_pred ccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhh
Q 015946 303 FDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLE 350 (397)
Q Consensus 303 l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~ 350 (397)
.+|| |.+.+..+-. +.... ++.|++++|||+++. .++...+.
T Consensus 152 ~~~G~~fr~~y~~L~~-l~~~~-----p~~~~v~lTAT~~~~~~~di~~~l~ 197 (607)
T PRK11057 152 SQWGHDFRPEYAALGQ-LRQRF-----PTLPFMALTATADDTTRQDIVRLLG 197 (607)
T ss_pred ccccCcccHHHHHHHH-HHHhC-----CCCcEEEEecCCChhHHHHHHHHhC
Confidence 9987 7777765533 22222 578999999999987 45666554
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=1.9e-23 Score=231.75 Aligned_cols=166 Identities=19% Similarity=0.258 Sum_probs=136.6
Q ss_pred EEcCCCCchHHHHHHHHHHHHHhccccC---CCCCCCCceEEEcCchhHHHHHHHHHHH----hh--------hcCCcce
Q 015946 183 LSSGSGSGRTLAYLLPLVQMLRRDEALL---PMKPMHPRAIVLCTTEESADQGFHMAKF----IS--------HCARLDS 247 (397)
Q Consensus 183 v~apTGsGKTl~~~lpil~~l~~~~~~~---~~~~~~~~~lvl~PtreLa~Qv~~~~~~----~~--------~~~~~~v 247 (397)
|+||||||||++|.+|++..+....... .....+.++|||+|+++|+.|+++.++. +. ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999997643110 0112468999999999999999988764 21 1247889
Q ss_pred eeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccC
Q 015946 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 326 (397)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~ 326 (397)
..++|+++...+...+.++++|||+||++|..++.+. ...+++|++|||||+|.|++..++.++..++.++...+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~---- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL---- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC----
Confidence 9999999999888888888999999999999887653 34689999999999999998778888888888887553
Q ss_pred CCCceEEEEeccCCCChhHHHhhhhc
Q 015946 327 GQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 327 ~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
+.+.|+|+||||++|..++++||...
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~ 182 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGD 182 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCC
Confidence 24689999999999999999999753
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=5.2e-22 Score=214.49 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=132.2
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 148 LKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 148 l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.+..+.+.+.+ ++| .||++|..||+.++.+ +|++++|+||||||++|+++++..+.. +.+++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvl 504 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVA 504 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEE
Confidence 44556666654 688 5999999999999875 799999999999999999999988753 57999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---hc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---SN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
||+||++||.|++..++.+....++++..++|+.....+... +. +.++||||||.. + ...+.+.++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEe
Confidence 999999999999999998887778899999888775544332 32 358999999942 2 34567899999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 297 DEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
||+|++ +......+..+. .++|+++||||+.+.
T Consensus 580 DEahrf-----gv~~~~~L~~~~--------~~~~vL~~SATpipr 612 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELR--------TSVDVLTLSATPIPR 612 (926)
T ss_pred eccccc-----chhHHHHHHhcC--------CCCCEEEEecCCCHH
Confidence 999984 344445555443 578999999996554
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=7e-22 Score=209.78 Aligned_cols=164 Identities=18% Similarity=0.259 Sum_probs=130.2
Q ss_pred HHHHHH-HHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEE
Q 015946 150 AEMIKA-VEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL 222 (397)
Q Consensus 150 ~~l~~~-l~~~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl 222 (397)
..+++. ...++| .||++|.++|+.+..+ +++|++|+||||||++|++|++..+. .+.+++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lil 316 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALM 316 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEE
Confidence 344444 456788 6999999999999876 48999999999999999999998875 37799999
Q ss_pred cCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH---Hhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 223 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 223 ~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+||++||.|++..++.+....++++..++|+........ .+. +.++|+||||+++.+ .+.+.++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 999999999999999998888999999999988654333 333 359999999988743 34578999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+|++ +......+... +..+++++||||..+.
T Consensus 392 ~Hrf-----g~~qr~~l~~~--------~~~~~iL~~SATp~pr 422 (681)
T PRK10917 392 QHRF-----GVEQRLALREK--------GENPHVLVMTATPIPR 422 (681)
T ss_pred hhhh-----hHHHHHHHHhc--------CCCCCEEEEeCCCCHH
Confidence 9986 22233333322 1468999999996544
No 60
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.4e-22 Score=211.59 Aligned_cols=149 Identities=13% Similarity=0.221 Sum_probs=133.0
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 143 FQELGLKAEMIKAVE-----KMGLFVP---SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 143 f~~l~l~~~l~~~l~-----~~g~~~~---~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
-+.|++..++.+.+. .+||..| +|+|.++|+.+..+++++++++||+|||++|++|++..+..
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 356888888888776 6899999 99999999999999999999999999999999999988764
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCCCCCC----
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRNVSCD---- 289 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~~~l~---- 289 (397)
+..++||+||++||.|+.+.+..++.++++++++++||.+...+...+ +|+|+||||++| .++++.+.+.++
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~ 211 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQ 211 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHh
Confidence 224899999999999999999999999999999999999988887665 489999999999 999998766655
Q ss_pred ---CcceEEEcCCCccc
Q 015946 290 ---DIRYVVLDEADTLF 303 (397)
Q Consensus 290 ---~l~~lVlDEah~~l 303 (397)
.+.++||||||.||
T Consensus 212 vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 212 VGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hcccccEEEEechhhhh
Confidence 56899999999987
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=1.5e-21 Score=215.00 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=131.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 150 ~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
.+..+....++| .||++|..||+.++.+ +|+|++|+||+|||.+|+.+++..+. .+++++||+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLv 656 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEe
Confidence 344555677888 7999999999999987 89999999999999999988876653 377999999
Q ss_pred CchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhc----CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 224 PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
||++||.|++..+.......++++.+++|+.+...+...+. ..++||||||+.+ . ..+.+.++++|||||+
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEech
Confidence 99999999999998876666888888999888777665442 4689999999643 2 3456789999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
|++ |+. ....++.++ .++|+++||||+.+.
T Consensus 732 hrf---G~~--~~e~lk~l~--------~~~qvLl~SATpipr 761 (1147)
T PRK10689 732 HRF---GVR--HKERIKAMR--------ADVDILTLTATPIPR 761 (1147)
T ss_pred hhc---chh--HHHHHHhcC--------CCCcEEEEcCCCCHH
Confidence 986 332 234444443 588999999997655
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=3e-21 Score=203.59 Aligned_cols=166 Identities=15% Similarity=0.212 Sum_probs=130.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC
Q 015946 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (397)
Q Consensus 151 ~l~~~l~~~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P 224 (397)
.+.+.+..++| .||++|..||+.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlilaP 292 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMAP 292 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEECC
Confidence 34556678899 7999999999999876 36899999999999999999998875 3679999999
Q ss_pred chhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH---Hh-cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 225 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VS-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 225 treLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~-~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
|++||.|+++.+..+....++++.+++|+........ .+ .+.++|+||||+.+.+ .+.+.++.+|||||+|
T Consensus 293 T~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 293 TEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQH 367 (630)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechh
Confidence 9999999999999998888999999999988665333 22 3458999999998753 3567899999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
++.. .+...+...... ...+++++||||..+.
T Consensus 368 ~fg~----~qr~~l~~~~~~------~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 368 RFGV----EQRKKLREKGQG------GFTPHVLVMSATPIPR 399 (630)
T ss_pred hccH----HHHHHHHHhccc------CCCCCEEEEeCCCCcH
Confidence 8531 122222222210 0267999999996554
No 63
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.85 E-value=8e-22 Score=188.92 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=114.8
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcC---CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcce
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCA---RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 293 (397)
|.+||+-|+|+|+.|.++.+..+..+. .++...+.||.....|...+..+.+|+||||+|+.+.+..+.+.+..+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 349999999999999999776665443 46767888999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhc
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERD 352 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~ 352 (397)
+|+||+|.+|..|+.+.+..+...++..+ +++...|.+++|||+.-- ..+.+.++.-
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~t--sdg~rlq~~vCsatlh~feVkk~~ervmhf 425 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMT--SDGFRLQSPVCSATLHIFEVKKVGERVMHF 425 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhh--cCCcccccceeeeEEeEEEeeehhhhhccC
Confidence 99999999999999999999999998765 344678999999999866 5566555543
No 64
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=1e-19 Score=162.30 Aligned_cols=169 Identities=32% Similarity=0.445 Sum_probs=138.2
Q ss_pred HCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
..++..++++|.+++..+..+ ++++++++||+|||.+++.+++..+... ....++|++|++.++.|....+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~--------~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG--------KGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc--------CCCcEEEEeCCHHHHHHHHHHH
Confidence 356789999999999999998 9999999999999999999999887653 2458999999999999999888
Q ss_pred HHhhhcCCcceeeecCCCChHHHHHHhcCCc-cEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 237 KFISHCARLDSSMENGGVSSKALEDVSNAPI-GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~-~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
..+............++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+....+...+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 75 KKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8776554433444445544344444444444 999999999999998877778889999999999887657888888888
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..+. ...+++++|||.++.
T Consensus 155 ~~~~--------~~~~~v~~saT~~~~ 173 (201)
T smart00487 155 KLLP--------KNVQLLLLSATPPEE 173 (201)
T ss_pred HhCC--------ccceEEEEecCCchh
Confidence 8774 578999999999877
No 65
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=8.7e-20 Score=194.64 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=147.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 153 ~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.......|| .|.++|++++-++..|.+|+||||||+|||++.-..+...+. ++-+++|++|.++|.+|.
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~----------~~qrviYTsPIKALsNQK 178 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR----------DGQRVIYTSPIKALSNQK 178 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH----------cCCceEeccchhhhhhhH
Confidence 344567788 799999999999999999999999999999987666655554 355699999999999999
Q ss_pred HHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHH
Q 015946 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312 (397)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 312 (397)
++.+........-.++++.|+... +.++.++|.|-+-|..++.++...+..+.+||+||+|.|-|...+...+
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 998766544322234666676543 4567899999999999999998899999999999999999999999999
Q ss_pred HHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 313 KILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
.++-.++ ..+|+|+||||++|+.+|..|+....
T Consensus 252 E~Ii~lP--------~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 252 EVIILLP--------DHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred HHHHhcC--------CCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 9999998 57899999999999999999999653
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=2.1e-19 Score=192.51 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=120.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH-HhhhcCCc
Q 015946 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARL 245 (397)
Q Consensus 167 iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~-~~~~~~~~ 245 (397)
+-.+.+..+..+.++|++|+||||||++|.+++++... .++++||+.|||++|.|++..+. .++...|.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34455667778899999999999999999999998752 24689999999999999998774 45555566
Q ss_pred ceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC-ccccCCCHHHH-HHHHHHhhhhhh
Q 015946 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPEI-SKILNPLKDSAL 323 (397)
Q Consensus 246 ~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah-~~l~~~f~~~l-~~il~~l~~~~~ 323 (397)
.|++.+++.. ......+|+|+|||+|++++.+. ..+.++++|||||+| ++++.+|.-.+ ..+...++
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr---- 144 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR---- 144 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC----
Confidence 6666555432 23345799999999999999864 568999999999999 57777765443 33444443
Q ss_pred ccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 324 KSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 324 ~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
.+.|+|+||||++.. .+..++.
T Consensus 145 ----~dlqlIlmSATl~~~-~l~~~l~ 166 (819)
T TIGR01970 145 ----EDLKILAMSATLDGE-RLSSLLP 166 (819)
T ss_pred ----CCceEEEEeCCCCHH-HHHHHcC
Confidence 578999999999875 3555443
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.82 E-value=1.7e-19 Score=185.71 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=115.5
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.-.|+++|.++++.++.+++.++++|||+|||+++...+. .+... ...++|||+||++|+.|+.+.+..+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999998654332 22221 34489999999999999999999876
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
......+..+.||.... ...+|+|+||+++.+... ..+.++++||+||||++.. ..+..++..++
T Consensus 183 ~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~- 247 (501)
T PHA02558 183 LFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLD- 247 (501)
T ss_pred cccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhh-
Confidence 55444555566654432 346899999999876542 2467899999999999864 44566776664
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++++||||+.+.
T Consensus 248 -------~~~~~lGLTATp~~~ 262 (501)
T PHA02558 248 -------NCKFKFGLTGSLRDG 262 (501)
T ss_pred -------ccceEEEEeccCCCc
Confidence 356899999999765
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.82 E-value=2.6e-19 Score=191.96 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH-HhhhcCCc
Q 015946 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARL 245 (397)
Q Consensus 167 iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~-~~~~~~~~ 245 (397)
+-.+.+.++.++++++++|+||||||++|.+++++... ..+++||+.|||++|.|++..+. .++...|.
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 33455667778899999999999999999999987531 23489999999999999998874 55566677
Q ss_pred ceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc-cccCCCHH-HHHHHHHHhhhhhh
Q 015946 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDRGFGP-EISKILNPLKDSAL 323 (397)
Q Consensus 246 ~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~-~l~~~f~~-~l~~il~~l~~~~~ 323 (397)
.+++.+++... .....+|+|+|||+|++++... ..+.++++|||||+|. .++.++.- .+..+++.++
T Consensus 79 ~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr---- 147 (812)
T PRK11664 79 TVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR---- 147 (812)
T ss_pred eEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC----
Confidence 77777665432 2234689999999999998864 4689999999999996 45544322 2333444343
Q ss_pred ccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 324 KSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 324 ~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
.+.|+|+||||++.. .+..++.
T Consensus 148 ----~~lqlilmSATl~~~-~l~~~~~ 169 (812)
T PRK11664 148 ----DDLKLLIMSATLDND-RLQQLLP 169 (812)
T ss_pred ----ccceEEEEecCCCHH-HHHHhcC
Confidence 578999999999865 4555443
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.81 E-value=4.5e-19 Score=185.92 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHH---------HHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLA---------YLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 166 ~iQ~~ai~~i~~g~dvlv~apTGsGKTl~---------~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
.+|.++++.++.|+++|++|+||||||.+ |++|.+..+..-. ....+.+++|++|||+||.|+...+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 49999999999999999999999999997 4455555443211 0124568999999999999988887
Q ss_pred HHhhhc---CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHH
Q 015946 237 KFISHC---ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (397)
Q Consensus 237 ~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 313 (397)
.....+ .+..+.+.+||... .+.....+..+|+|+|++. ....+.++++|||||||.+...+ +.+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHH
Confidence 665443 35667888999873 2222333467999999763 12357899999999999987665 45555
Q ss_pred HHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhh
Q 015946 314 ILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECL 349 (397)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l 349 (397)
++..+.. ...|+++||||++.. ..+..++
T Consensus 313 llk~~~~-------~~rq~ILmSATl~~dv~~l~~~~ 342 (675)
T PHA02653 313 VARKHID-------KIRSLFLMTATLEDDRDRIKEFF 342 (675)
T ss_pred HHHHhhh-------hcCEEEEEccCCcHhHHHHHHHh
Confidence 5554431 235999999999866 4554444
No 70
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.3e-19 Score=182.67 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=146.2
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 153 IKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 153 ~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
...|+. +||..+++-|.++|..+++|+|+++..|||+||++||.||++-. ...+|||+|..+|...
T Consensus 6 ~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~D 72 (590)
T COG0514 6 QQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHHH
Confidence 355665 69999999999999999999999999999999999999999863 3489999999999988
Q ss_pred HHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-
Q 015946 232 GFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG- 306 (397)
Q Consensus 232 v~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~- 306 (397)
+.+.+... |+.+.++.+..+..+....+ ....++|.-+|++|..--....+.-..+.++|||||||+.+||
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCC
Confidence 77777765 67888888887766655433 3348999999999854432223335678899999999999998
Q ss_pred -CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhccC
Q 015946 307 -FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDNA 354 (397)
Q Consensus 307 -f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~~ 354 (397)
|++++..+-...... ++++++++|||.++. .++...|.....
T Consensus 149 dFRP~Y~~lg~l~~~~------~~~p~~AlTATA~~~v~~DI~~~L~l~~~ 193 (590)
T COG0514 149 DFRPDYRRLGRLRAGL------PNPPVLALTATATPRVRDDIREQLGLQDA 193 (590)
T ss_pred ccCHhHHHHHHHHhhC------CCCCEEEEeCCCChHHHHHHHHHhcCCCc
Confidence 999999887766532 488999999999988 888888877654
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.79 E-value=5.6e-18 Score=167.19 Aligned_cols=155 Identities=13% Similarity=0.141 Sum_probs=109.1
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc--
Q 015946 167 IQCVGIPAVLNGKS--VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC-- 242 (397)
Q Consensus 167 iQ~~ai~~i~~g~d--vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~-- 242 (397)
+|.++++++..+.+ ++++||||||||++|++|++. ...+++|++|+++|+.|+++.+..+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------------GENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999998874 889999999999999999984 2346899999999999999888777533
Q ss_pred --CCcceeeecCCCChH--H------------------HHHHhcCCccEEEeChHHHHHHHhcCCC--------CCCCcc
Q 015946 243 --ARLDSSMENGGVSSK--A------------------LEDVSNAPIGMLIATPSEVLQHIEDRNV--------SCDDIR 292 (397)
Q Consensus 243 --~~~~v~~~~g~~~~~--~------------------~~~~~~~~~~IlV~TP~~L~~~l~~~~~--------~l~~l~ 292 (397)
.+..+..+.|..... . +.......++|+++||+.|..++..... .+.+++
T Consensus 68 ~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 68 PERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 245555566642221 0 0011234688999999999776654211 257899
Q ss_pred eEEEcCCCccccCCC-----HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 293 YVVLDEADTLFDRGF-----GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 293 ~lVlDEah~~l~~~f-----~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+|||||+|.+..++. ......+++... ...+++++|||+++.
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------CRRKFVFLSATPDPA 194 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhh--------cCCcEEEEecCCCHH
Confidence 999999998754331 112233333322 357999999999865
No 72
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=1.4e-18 Score=183.71 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCC-CCCCCceEEEcC
Q 015946 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM-KPMHPRAIVLCT 224 (397)
Q Consensus 147 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~-~~~~~~~lvl~P 224 (397)
.+|.+-..++ .|...+.++|.....+++.+. ++++|||||+|||...++.+|+.+..+...... .....+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 3455555544 467779999999999988765 899999999999999999999999876442221 233558999999
Q ss_pred chhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCC---CCCcceEEEcCCCc
Q 015946 225 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS---CDDIRYVVLDEADT 301 (397)
Q Consensus 225 treLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~---l~~l~~lVlDEah~ 301 (397)
..+|++.+...|.......|++|.-++|+.....+.- .+.+|+||||+. ++.+.++..+ .+-++++|+||+|
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK-~DiITRk~gdraY~qlvrLlIIDEIH- 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEK-WDIITRKSGDRAYEQLVRLLIIDEIH- 447 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccch-hhhhhcccCchhHHHHHHHHhhhhhh-
Confidence 9999999999888888888999999999877544321 247899999999 4777665433 3467999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
|+...+|+.++.|..+..+. +.....+++++++||||||..+++.+|..++
T Consensus 448 LLhDdRGpvLESIVaRt~r~-ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~ 498 (1674)
T KOG0951|consen 448 LLHDDRGPVLESIVARTFRR-SESTEEGSRLVGLSATLPNYEDVASFLRVDP 498 (1674)
T ss_pred hcccccchHHHHHHHHHHHH-hhhcccCceeeeecccCCchhhhHHHhccCc
Confidence 55567899999999887643 3444568999999999999999999888776
No 73
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=8.9e-18 Score=164.95 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=137.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
-.++.+|......++.+ |.|++.|||-|||++.++-+...+... .+ .+|+++||+-|+.|.+..|..+..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~--------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF--------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc--------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 36777888887777765 999999999999999999998888763 23 899999999999999999998877
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~ 321 (397)
...-.++.+.|..........+.+ ..|+|+||.-+..-|..+.+++.++.++|+||||+-....-. -.+.+...+.
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY---v~Va~~y~~~ 159 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY---VFVAKEYLRS 159 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH---HHHHHHHHHh
Confidence 666788899999998887777765 589999999999999999999999999999999987533222 2233322221
Q ss_pred hhccCCCCceEEEEeccCCCC----hhHHHhhhh
Q 015946 322 ALKSNGQGFQTILVTAAIAEL----SSLMECLER 351 (397)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~----~~l~~~l~~ 351 (397)
..++.++++|||.+.. ..+..+|..
T Consensus 160 -----~k~~~ilgLTASPGs~~ekI~eV~~nLgI 188 (542)
T COG1111 160 -----AKNPLILGLTASPGSDLEKIQEVVENLGI 188 (542)
T ss_pred -----ccCceEEEEecCCCCCHHHHHHHHHhCCc
Confidence 2588999999999988 455555543
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=1.1e-17 Score=181.09 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=128.1
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.-.++++|..++..++.+ |+|+++|||+|||+++++++...+.. .+.++|||+||++|+.|....++.+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~---------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK---------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh---------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 347899999999988887 99999999999999999999887742 46689999999999999999888876
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
...+..+..+.|+.........+ ...+|+|+||+.+...+..+.+.+.++++|||||||++........ |+..+..
T Consensus 83 ~~~~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~---i~~~~~~ 158 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVY---IAERYHE 158 (773)
T ss_pred CCCCceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHH---HHHHHHh
Confidence 54455788888887766544444 3478999999999888888888899999999999999864432222 3333221
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
. ...+++++||||....
T Consensus 159 ~-----~~~~~il~lTaTP~~~ 175 (773)
T PRK13766 159 D-----AKNPLVLGLTASPGSD 175 (773)
T ss_pred c-----CCCCEEEEEEcCCCCC
Confidence 1 1467899999997655
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.76 E-value=2.6e-18 Score=169.77 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=101.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH--
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-- 257 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~-- 257 (397)
+++++||||||||++|+++++..+... .+.++||++|+++|+.|+++.+..+... .++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 689999999999999999999876542 4669999999999999999988886321 233333332210
Q ss_pred ----------HHHHHh-c-----CCccEEEeChHHHHHHHhcCC----CCCC--CcceEEEcCCCccccCCCHHHHHHHH
Q 015946 258 ----------ALEDVS-N-----APIGMLIATPSEVLQHIEDRN----VSCD--DIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 258 ----------~~~~~~-~-----~~~~IlV~TP~~L~~~l~~~~----~~l~--~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
...... . ...+|+|+||++++..+..+. ..+. ..++|||||+|.+.+.+++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000000 1 135799999999988876521 1111 23789999999998765444 66666
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..+.. .++|+++||||+++.
T Consensus 149 ~~l~~-------~~~~~i~~SATlp~~ 168 (358)
T TIGR01587 149 EVLKD-------NDVPILLMSATLPKF 168 (358)
T ss_pred HHHHH-------cCCCEEEEecCchHH
Confidence 66642 478999999999843
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.76 E-value=3e-17 Score=174.12 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 163 VPSEIQCVGIPAVLNG---KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g---~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.+++.|++++..+..+ +++++.|+||||||.+|+.++...+.. +.++|||+||++|+.|+.+.++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----------g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----------GKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc----------CCeEEEEeCcHHHHHHHHHHHHHH
Confidence 5899999999999874 789999999999999999887776643 568999999999999999888764
Q ss_pred hhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC---CHHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FGPEIS 312 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~---f~~~l~ 312 (397)
.+..+..++|+.+...+... ..+.++|+|||++.+. ..+.++.+|||||+|...-.+ ......
T Consensus 214 ---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 214 ---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 25688899999877654432 3456899999998863 457899999999999764332 111122
Q ss_pred HHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 313 KILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
.+..... . ..+.|+|++|||.+
T Consensus 284 ~va~~ra-~-----~~~~~~il~SATps 305 (679)
T PRK05580 284 DLAVVRA-K-----LENIPVVLGSATPS 305 (679)
T ss_pred HHHHHHh-h-----ccCCCEEEEcCCCC
Confidence 2221111 1 15789999999955
No 77
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=3.4e-18 Score=177.01 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=141.9
Q ss_pred HHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
...+| .|-.+|++||-++..|.+|+|.|+|.+|||++.-..+.-. .. ++.++||.+|-++|.+|-++.|
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~---------h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK---------HMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh---------hccceEecchhhhhccchHHHH
Confidence 45577 6889999999999999999999999999999854333221 11 5779999999999999999998
Q ss_pred HHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHH
Q 015946 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 316 (397)
+.-... ++.++|+.... ..+.+||+|-+.|..++-++.--++++.+||+||+|.+-|..++...+.++-
T Consensus 361 k~tF~D----vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 361 KETFGD----VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred HHhccc----cceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeee
Confidence 876554 33677776543 3478999999999999999888889999999999999988889999999999
Q ss_pred HhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 317 PLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
+++ ..+++|++|||+||..+|+.|+.+.
T Consensus 430 MlP--------~HV~~IlLSATVPN~~EFA~WIGRt 457 (1248)
T KOG0947|consen 430 MLP--------RHVNFILLSATVPNTLEFADWIGRT 457 (1248)
T ss_pred ecc--------ccceEEEEeccCCChHHHHHHhhhc
Confidence 998 6899999999999999999999876
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.74 E-value=1.1e-17 Score=174.58 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=113.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|..+...+..|+ |+.++||+|||++|++|++-.... +..+.|++||++||.|.+..+..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 577 79999999999988887 999999999999999999654443 44799999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCcccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l~ 304 (397)
+...+|+++++++|+.+...+...+ .++|+||||++| .+++..+ .+.+..+.++||||+|.|+-
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999999999998876554444 379999999999 8998766 34678999999999999863
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=2.1e-17 Score=174.66 Aligned_cols=131 Identities=16% Similarity=0.282 Sum_probs=111.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|..+++.+..|+ |+.+.||+|||++|++|++..... |..++|++||++||.|.+..+..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----------G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE----------GKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc----------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 588 89999999999998887 999999999999999999866653 77999999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCC------CCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~------~~l~~l~~lVlDEah~~l 303 (397)
+...+|++++++.|+.+...+.+.. ..++|+||||++| .+++.... ..+..+.++||||||.|+
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999999999998843333333 3489999999999 55554332 356889999999999876
No 80
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=9e-17 Score=134.99 Aligned_cols=144 Identities=31% Similarity=0.421 Sum_probs=112.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
+++++.++||+|||..++..+....... ...+++|++|++.++.|....+...... +..+..+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 4689999999999999998888876542 3569999999999999998888777655 677777777776666
Q ss_pred HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
.........+|+++|++.+...+..........+++|+||+|.+....+........... ....+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~--------~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL--------PKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC--------CccceEEEEecc
Confidence 655566779999999999998887766667789999999999987665444321112211 157899999999
Q ss_pred C
Q 015946 339 I 339 (397)
Q Consensus 339 l 339 (397)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 5
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.73 E-value=3.9e-17 Score=168.64 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=123.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+.-.++.+|.+....++ |+|+||++|||+|||++.+.-++.++... ...++|+++||+-|+.|....+..+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--------p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR--------PKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC--------CcceEEEeeCCchHHHHHHHHHhhc
Confidence 34478999999998888 99999999999999999999999998874 3479999999999999887555555
Q ss_pred hhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCC-CCCcceEEEcCCCccccCCCHHHHH-HHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS-CDDIRYVVLDEADTLFDRGFGPEIS-KILNP 317 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~-l~~l~~lVlDEah~~l~~~f~~~l~-~il~~ 317 (397)
+.. ..+....||.........+-...+|+|+||..|...|..+... ++.+.++||||||+-....-...+. ..+..
T Consensus 130 ~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 130 LIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred cCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 443 5566666663332222234445799999999999999876544 5999999999999875444333332 33332
Q ss_pred hhhhhhccCCCCceEEEEeccCCCC
Q 015946 318 LKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
-. ...|+|++|||+++.
T Consensus 208 k~--------~~~qILgLTASpG~~ 224 (746)
T KOG0354|consen 208 KN--------QGNQILGLTASPGSK 224 (746)
T ss_pred hh--------ccccEEEEecCCCcc
Confidence 21 345999999999977
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=6.2e-17 Score=167.88 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=110.2
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
..|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++.... .++.++||+||++||.|.+..+.
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHH
Confidence 3577 79999999999999999 99999999999999999998765 36799999999999999999999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCC-------------------------CCCCCc
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN-------------------------VSCDDI 291 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~-------------------------~~l~~l 291 (397)
.+....|+++++++|+.+.. .+....+++|+|||...| .++|..+. .....+
T Consensus 166 ~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 166 PLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred HHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 99999999999999997643 334445689999999888 45554321 123568
Q ss_pred ceEEEcCCCccc
Q 015946 292 RYVVLDEADTLF 303 (397)
Q Consensus 292 ~~lVlDEah~~l 303 (397)
.+.||||+|.+|
T Consensus 244 ~~aIvDEvDSiL 255 (656)
T PRK12898 244 HFAIVDEADSVL 255 (656)
T ss_pred ceeEeeccccee
Confidence 899999999765
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.71 E-value=5.4e-17 Score=174.06 Aligned_cols=221 Identities=18% Similarity=0.193 Sum_probs=159.3
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 151 EMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 151 ~l~~~l-~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
++...+ ..+|+..+++.|.++|..++.|+|++|..|||.||++||.+|++- .++.+|||.|..+|+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-------------~~gitvVISPL~SLm 317 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-------------LGGVTVVISPLISLM 317 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-------------cCCceEEeccHHHHH
Confidence 344444 467999999999999999999999999999999999999999975 355899999999999
Q ss_pred HHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---h-cC--CccEEEeChHHHHHHHh--cCCCCCCC---cceEEEcC
Q 015946 230 DQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S-NA--PIGMLIATPSEVLQHIE--DRNVSCDD---IRYVVLDE 298 (397)
Q Consensus 230 ~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~~--~~~IlV~TP~~L~~~l~--~~~~~l~~---l~~lVlDE 298 (397)
+.+...+.. .++....+.++.....+... + .+ .++|+..||+.+...-. .....+.. +.++||||
T Consensus 318 ~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 318 QDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDE 393 (941)
T ss_pred HHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecH
Confidence 876665522 37788888888877544332 2 23 58999999999854322 12223444 89999999
Q ss_pred CCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhccCCceeeEEeecCceeeEEecc
Q 015946 299 ADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDNAGKVTAMLLEMDQAEVFDLTE 374 (397)
Q Consensus 299 ah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~~~~v~~~~~~v~~~~~~~~~~ 374 (397)
||+...|| |++.+..+-....+. +++.+|++|||.+.. .+++..|...+.......+ .+.+.++++..
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~------~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf--nR~NL~yeV~~ 465 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRF------PGVPFIALTATATERVREDVIRSLGLRNPELFKSSF--NRPNLKYEVSP 465 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhC------CCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC--CCCCceEEEEe
Confidence 99999998 899888876655432 468999999999888 9999999877655333222 23344555554
Q ss_pred Ch-HHHHHHHHHHHHcccccCCC
Q 015946 375 SQ-DALKKKVVEAMDSLHLSAPG 396 (397)
Q Consensus 375 ~~-~~~~~~l~~~~~~l~~~~p~ 396 (397)
+. .+....+.+.+.......+|
T Consensus 466 k~~~~~~~~~~~~~~~~~~~~s~ 488 (941)
T KOG0351|consen 466 KTDKDALLDILEESKLRHPDQSG 488 (941)
T ss_pred ccCccchHHHHHHhhhcCCCCCe
Confidence 44 33333344444444444443
No 84
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=2.1e-17 Score=167.58 Aligned_cols=199 Identities=15% Similarity=0.219 Sum_probs=160.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.+-|+|..+|-.+-++.+|+|.|.|.+|||.+.-..|...+.. .-++||.+|-++|.+|-++.+..-..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFK- 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhc-
Confidence 6789999999999999999999999999999988777777764 44899999999999999988765444
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
.|+..+|+.... ..+..||.|.+.|..++-++.--+..+.+||+||+|.|-|..++...+.-+-.++
T Consensus 198 ---DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP--- 264 (1041)
T KOG0948|consen 198 ---DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP--- 264 (1041)
T ss_pred ---ccceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc---
Confidence 356667766543 3467899999999999999888899999999999999998888888887777777
Q ss_pred hccCCCCceEEEEeccCCCChhHHHhhhhc------------cCCceeeEEeecCceeeEEeccChHH-HHHHHHHHHHc
Q 015946 323 LKSNGQGFQTILVTAAIAELSSLMECLERD------------NAGKVTAMLLEMDQAEVFDLTESQDA-LKKKVVEAMDS 389 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~~~l~~~l~~~------------~~~~v~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~~ 389 (397)
.+++.+++|||+||..+|++|+... .+.+..|+.++..-.-.+.+++.... +......+|..
T Consensus 265 -----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 265 -----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred -----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 6899999999999999999999864 25667788777666666655544332 23344455554
Q ss_pred c
Q 015946 390 L 390 (397)
Q Consensus 390 l 390 (397)
|
T Consensus 340 l 340 (1041)
T KOG0948|consen 340 L 340 (1041)
T ss_pred h
Confidence 4
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.71 E-value=7.7e-17 Score=169.12 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=104.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .|+++|......+..| .|++++||+|||++|++|++..... +..++||+|+++||.|.+..+..
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~ 133 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGP 133 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHH
Confidence 476 6777777777766665 6999999999999999998776653 45799999999999999999999
Q ss_pred hhhcCCcceeeecCCCC---hHHHHHHhcCCccEEEeChHHH-HHHHhc------CCCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVS---SKALEDVSNAPIGMLIATPSEV-LQHIED------RNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~---~~~~~~~~~~~~~IlV~TP~~L-~~~l~~------~~~~l~~l~~lVlDEah~~l 303 (397)
+...+|+.+++++++.. .....+....+++|++|||++| .+++.. ....+..+.++||||||.||
T Consensus 134 l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 134 VYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 99999999988777532 2222334445699999999999 555532 23457889999999999985
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=9.3e-17 Score=169.83 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=112.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .|+++|...--++..|+ |+.++||+|||++|++|++..+.. +..++||+||++||.|.+..+..
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 476 78999988776666665 999999999999999999987763 44699999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC-CCCC-----CCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~-~~~l-----~~l~~lVlDEah~~l 303 (397)
+...+|+++++++|+.+...+...+ .++|+||||++| .+++..+ .+.+ ..+.++||||||.||
T Consensus 146 l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred HhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999999999998877765555 489999999999 9999876 3344 589999999999876
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.70 E-value=1e-16 Score=153.97 Aligned_cols=180 Identities=22% Similarity=0.293 Sum_probs=134.7
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 151 EMIKAVEK-MGLFVP-SEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 151 ~l~~~l~~-~g~~~~-~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
.+..+|++ +|+.++ ++.|..|+.++..+ +||.|++|||+||+|||.+|.|- .+..+||++|..+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~-------------~~gITIV~SPLiA 72 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV-------------HGGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH-------------hCCeEEEehHHHH
Confidence 46677776 577654 68999999987755 59999999999999999999986 3558999999999
Q ss_pred HHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh------cCCccEEEeChHHHHHH----HhcCCCCCCCcceEEEc
Q 015946 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS------NAPIGMLIATPSEVLQH----IEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 228 La~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~------~~~~~IlV~TP~~L~~~----l~~~~~~l~~l~~lVlD 297 (397)
|+.++.+.+..+ .+.+..+.+..+..+..+.+ +....||..||+.-..- +-+...+-.-|.|+|||
T Consensus 73 LIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 998888877776 44555566655555544433 34568999999865322 12233345668999999
Q ss_pred CCCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhcc
Q 015946 298 EADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDN 353 (397)
Q Consensus 298 Eah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~ 353 (397)
|||++..|| |++++..+-. |+..+ +....++++||.+.. +++...|....
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-LRS~~-----~~vpwvALTATA~~~VqEDi~~qL~L~~ 202 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-LRSVC-----PGVPWVALTATANAKVQEDIAFQLKLRN 202 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-HHhhC-----CCCceEEeecccChhHHHHHHHHHhhcC
Confidence 999999998 8998876543 33333 688999999999887 77777776543
No 88
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.69 E-value=8.4e-16 Score=145.72 Aligned_cols=184 Identities=20% Similarity=0.308 Sum_probs=142.3
Q ss_pred CcccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 136 NAEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
..+..+.=++|+.+.+..+.|++ +...+++|.|..+|.+...|.|+++..|||.||++||.+|++-
T Consensus 66 ~spaawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------- 132 (695)
T KOG0353|consen 66 RSPAAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------- 132 (695)
T ss_pred CCccccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh-------------
Confidence 33345555778888888888875 5788999999999999999999999999999999999999985
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---h---cCCccEEEeChHHHHHH---Hhc--
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S---NAPIGMLIATPSEVLQH---IED-- 283 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~---~~~~~IlV~TP~~L~~~---l~~-- 283 (397)
....+|||||..+|+....-.++.+ |+...++....+.....+. + .....++..||+.+... +.+
T Consensus 133 adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle 208 (695)
T KOG0353|consen 133 ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE 208 (695)
T ss_pred cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH
Confidence 3668999999999998877777776 5666666666555443221 1 23367899999998542 221
Q ss_pred CCCCCCCcceEEEcCCCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 284 RNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 284 ~~~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..+....+.++.+||+|+...|| |++++.. +..|++.. ++..+|+++||.++.
T Consensus 209 ka~~~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkrqf-----~~~~iigltatatn~ 263 (695)
T KOG0353|consen 209 KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKRQF-----KGAPIIGLTATATNH 263 (695)
T ss_pred HHhhcceeEEEeecceeehhhhCcccCcchHH-HHHHHHhC-----CCCceeeeehhhhcc
Confidence 34567788999999999999997 8887653 34444444 688999999999988
No 89
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.69 E-value=4.9e-16 Score=170.58 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=110.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC----chhHHHHHHHHHHH-hhh
Q 015946 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT----TEESADQGFHMAKF-ISH 241 (397)
Q Consensus 167 iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P----treLa~Qv~~~~~~-~~~ 241 (397)
.-...+.++..++.++|+|+||||||+ .+|.+...... +....+++.-| +++||.++...+.. ++.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-------GVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 344555666677788999999999999 57744322211 01122333335 57888888887764 444
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC-ccccCCCHHHHHHHHHHhhh
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah-~~l~~~f~~~l~~il~~l~~ 320 (397)
..|+.+- ... ....+++|+|+|||+|++++....+ +.++++||||||| ++++.+|...+ +...++.
T Consensus 149 ~VGY~vr-------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~--Lk~lL~~ 215 (1294)
T PRK11131 149 CVGYKVR-------FND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGY--LKELLPR 215 (1294)
T ss_pred eeceeec-------Ccc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHH--HHHhhhc
Confidence 4444321 111 1234689999999999999987644 8999999999999 58888876531 2222221
Q ss_pred hhhccCCCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCc
Q 015946 321 SALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQ 366 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~ 366 (397)
.++.|+|+||||++. ..+.++|...+...|....++|..
T Consensus 216 ------rpdlKvILmSATid~-e~fs~~F~~apvI~V~Gr~~pVei 254 (1294)
T PRK11131 216 ------RPDLKVIITSATIDP-ERFSRHFNNAPIIEVSGRTYPVEV 254 (1294)
T ss_pred ------CCCceEEEeeCCCCH-HHHHHHcCCCCEEEEcCccccceE
Confidence 147899999999964 578877766554444444444443
No 90
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.61 E-value=4.1e-15 Score=155.22 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=156.1
Q ss_pred CCCHHHHHH-HHHCCCCCCcHHHHHHH--HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 147 GLKAEMIKA-VEKMGLFVPSEIQCVGI--PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 147 ~l~~~l~~~-l~~~g~~~~~~iQ~~ai--~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
++++.+... .+..|+.+++.||.+++ +.++.++|+|..+||+.|||++.-+-++..+.. ++..++.+.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~---------~rr~~llil 276 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC---------RRRNVLLIL 276 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH---------HhhceeEec
Confidence 455555555 45679999999999998 578899999999999999999999999888776 355789999
Q ss_pred CchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc--CCCCCCCcceEEEcCCCc
Q 015946 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 224 PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~--~~~~l~~l~~lVlDEah~ 301 (397)
|-...++.-...+..+....|+.+.+++|....... .+.-++.|||-++-..+++. ..-.+..+.+|||||.|.
T Consensus 277 p~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 277 PYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred ceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 999999888888888999999999998877665432 23358999999998777654 234567899999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
+.|.+++..++.++..+...+. ...+|+|+||||++|...+..||...
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~---~~~~~iIGMSATi~N~~lL~~~L~A~ 400 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENL---ETSVQIIGMSATIPNNSLLQDWLDAF 400 (1008)
T ss_pred eeccccchHHHHHHHHHHHhcc---ccceeEeeeecccCChHHHHHHhhhh
Confidence 9999999999999998865442 22378999999999999999999853
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=6.2e-15 Score=155.87 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=111.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|....-++..|+ |+.+.||+|||+++.+|++-.... +..+-|++||..||.|.+..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHH
Confidence 577 79999999888887775 999999999999999999744432 33577999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCC------CCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~------~~l~~l~~lVlDEah~~l 303 (397)
+...+|++++++.|+.+...+...+. ++|++|||++| .++++.+. ..+..+.++||||||.||
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999999999999998887766653 89999999999 99997654 246789999999999876
No 92
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=2.1e-14 Score=127.37 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=101.5
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN-------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~-------g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
.|+++|.+++..+.. ++++++.+|||||||.+++..+.... . ++||+||+..|+.|....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~--~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R--KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C--EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c--ceeEecCHHHHHHHHHHH
Confidence 578999999998873 58999999999999999876444432 1 899999999999999988
Q ss_pred HHHhhhcCCcce-----------eeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCC-----------CCCCCcce
Q 015946 236 AKFISHCARLDS-----------SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-----------VSCDDIRY 293 (397)
Q Consensus 236 ~~~~~~~~~~~v-----------~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~-----------~~l~~l~~ 293 (397)
+..+........ ....................+|+++|...+........ ......++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 866543321100 01111111122223334567899999999988765421 22356789
Q ss_pred EEEcCCCccccCCCHHH-HHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 294 VVLDEADTLFDRGFGPE-ISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~-l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
||+||||++. ... ...++. . ....+|+||||..
T Consensus 150 vI~DEaH~~~----~~~~~~~i~~-~---------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 150 VIIDEAHHYP----SDSSYREIIE-F---------KAAFILGLTATPF 183 (184)
T ss_dssp EEEETGGCTH----HHHHHHHHHH-S---------SCCEEEEEESS-S
T ss_pred EEEehhhhcC----CHHHHHHHHc-C---------CCCeEEEEEeCcc
Confidence 9999999874 333 455555 2 4678999999975
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=5.8e-14 Score=154.86 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=109.1
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhhhcCCccee
Q 015946 170 VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSS 248 (397)
Q Consensus 170 ~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~~~~~~v~ 248 (397)
+.+.++..++.+|++|+||||||.. +|.+-.-.. .+....+++.-|.|--|..++..+ ..++...|-.|+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 4555666777899999999999994 565432211 012234455567666666555433 333333333333
Q ss_pred eecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC-ccccCCCHHH-HHHHHHHhhhhhhccC
Q 015946 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPE-ISKILNPLKDSALKSN 326 (397)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah-~~l~~~f~~~-l~~il~~l~~~~~~~~ 326 (397)
+.... .. .......|.|+|+|+|++.+.... .+.++++||||||| ++++.+|.-. +..++...
T Consensus 145 Y~vR~---~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-------- 209 (1283)
T TIGR01967 145 YKVRF---HD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-------- 209 (1283)
T ss_pred eEEcC---Cc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC--------
Confidence 22111 11 123457899999999999997754 38999999999999 5888877654 44443322
Q ss_pred CCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCc
Q 015946 327 GQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQ 366 (397)
Q Consensus 327 ~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~ 366 (397)
++.|+|+||||++. ..+.++|...+...+....++|..
T Consensus 210 -pdLKlIlmSATld~-~~fa~~F~~apvI~V~Gr~~PVev 247 (1283)
T TIGR01967 210 -PDLKIIITSATIDP-ERFSRHFNNAPIIEVSGRTYPVEV 247 (1283)
T ss_pred -CCCeEEEEeCCcCH-HHHHHHhcCCCEEEECCCccccee
Confidence 47899999999964 578888876665555544455543
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=4.1e-14 Score=152.27 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=114.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
..|+|+|..+......+..+|+.||||+|||.+.+..+...+.. +...+++|..||+++++|++..+..+..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 47999999886554456679999999999999987766543332 1356899999999999999998875433
Q ss_pred cC--CcceeeecCCCChHHHH---------------------HHhc---C---CccEEEeChHHHHHHHhc-CCCCCCCc
Q 015946 242 CA--RLDSSMENGGVSSKALE---------------------DVSN---A---PIGMLIATPSEVLQHIED-RNVSCDDI 291 (397)
Q Consensus 242 ~~--~~~v~~~~g~~~~~~~~---------------------~~~~---~---~~~IlV~TP~~L~~~l~~-~~~~l~~l 291 (397)
.. ...+...+|........ ..+. + -..|+|||...++..+-. +...+..+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 21 34567777765422110 1111 1 158999999988755433 22222222
Q ss_pred ----ceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhh
Q 015946 292 ----RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECL 349 (397)
Q Consensus 292 ----~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l 349 (397)
++|||||+|.+ +......+..+++.+.. ....+|+||||+|.. ..+...+
T Consensus 437 ~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 437 GLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------AGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred hhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------cCCcEEEEeCCCCHHHHHHHHHHh
Confidence 58999999976 33344555666665542 356799999999976 4455544
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=3.9e-14 Score=145.51 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=94.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH
Q 015946 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (397)
Q Consensus 182 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 261 (397)
|+.|+||||||++|+..+...+. .+.++|||+|+++|+.|+++.++... +..+..++|+.+......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~----------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA----------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH
Confidence 57899999999999766555443 36689999999999999998887643 567888898887655433
Q ss_pred H----hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC---CHHHHHHHHHHhhhhhhccCCCCceEEE
Q 015946 262 V----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTIL 334 (397)
Q Consensus 262 ~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~---f~~~l~~il~~l~~~~~~~~~~~~q~i~ 334 (397)
. ..+.++|||||+..+. ..+.++++|||||+|...-.+ .......+...... ..++++|+
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------~~~~~vil 134 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------KFNCPVVL 134 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH------hcCCCEEE
Confidence 3 3345899999998763 357899999999999865332 11112222221111 14789999
Q ss_pred EeccCC
Q 015946 335 VTAAIA 340 (397)
Q Consensus 335 ~SATl~ 340 (397)
+|||.+
T Consensus 135 ~SATPs 140 (505)
T TIGR00595 135 GSATPS 140 (505)
T ss_pred EeCCCC
Confidence 999943
No 96
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=1.2e-12 Score=134.05 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=135.5
Q ss_pred CCCHHHHHH-HHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 147 GLKAEMIKA-VEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 147 ~l~~~l~~~-l~~~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
.....+++. +..+.| .||..|+.++..|..+ .+=|++|--|||||++.++.++..+.. |.++
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----------G~Q~ 314 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----------GYQA 314 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----------CCee
Confidence 344455544 567788 7999999999998854 367999999999999999999998874 7899
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---h-cCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
...+||.-||.|-+..+..+....+++|..+.|.......... + +...+|+|||-. |-+..+.+.++.++|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVI 389 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVI 389 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEE
Confidence 9999999999999999999999999999999998776554433 3 344999999943 334567789999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhhccCCC-CceEEEEeccCCCChhHHHhh
Q 015946 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQ-GFQTILVTAAIAELSSLMECL 349 (397)
Q Consensus 296 lDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~-~~q~i~~SATl~~~~~l~~~l 349 (397)
+||=|++ +..=+..+..-. . .+-+++||||.=+..-.+..|
T Consensus 390 iDEQHRF-----GV~QR~~L~~KG--------~~~Ph~LvMTATPIPRTLAlt~f 431 (677)
T COG1200 390 IDEQHRF-----GVHQRLALREKG--------EQNPHVLVMTATPIPRTLALTAF 431 (677)
T ss_pred Eeccccc-----cHHHHHHHHHhC--------CCCCcEEEEeCCCchHHHHHHHh
Confidence 9999984 555455554322 3 578999999966653333333
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=6.4e-14 Score=148.19 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=108.6
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .|+++|...--.+..|+ |+.++||.|||++|.+|++...+. +..+.||+|++.||.+....+..
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 476 78899987666665554 999999999999999999987764 45599999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC-CCCC-----CCcceEEEcCCCcccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRYVVLDEADTLFD 304 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~-~~~l-----~~l~~lVlDEah~~l~ 304 (397)
+...+|++|+++.++.+.......+ .++|++|||++| .++|..+ .+.. ..+.++||||||.||-
T Consensus 146 l~~~lGlsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHhcCCeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999999999999988864432222 589999999999 8888776 3333 7889999999998863
No 98
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=144.17 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=122.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|-.||.+.+..+-.+..++|+|||.+|||++-- .+++.+.+.. ....+|+++||++|+.|+..........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLRes-------D~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRES-------DSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhhc-------CCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 6788999999999999999999999999998743 3444444432 4568999999999999987765543322
Q ss_pred CC-cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc---CCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 243 AR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED---RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 243 ~~-~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~---~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
.. .+...+.|.....-+.. .-.|+|+|+-|+.+-.+|.. ......+++++|+||+|.+....-+--.+.++..+
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc
Confidence 11 22233344333222211 12489999999999888876 44568899999999999986554333344444332
Q ss_pred hhhhhccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
.|.+|++|||++|...+.+|+.
T Consensus 661 ----------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 ----------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ----------CCCeeEEecccCCHHHHHHHHH
Confidence 6899999999999999999998
No 99
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=2.5e-13 Score=137.66 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN----GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~----g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|+++|.+++.++.. ++..++++|||+|||++++..+.. .+..+||||||++|+.|..+.+..
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-------------~~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-------------LKRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-------------hcCCEEEEECcHHHHHHHHHHHHH
Confidence 699999999999988 889999999999999987765543 233499999999999998765554
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
..... -.++.+.|+.. .. .. ..|.|+|-..+...-....+......+||+||||++.. +....+...+
T Consensus 103 ~~~~~-~~~g~~~~~~~-~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a----~~~~~~~~~~ 170 (442)
T COG1061 103 FLLLN-DEIGIYGGGEK-EL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA----PSYRRILELL 170 (442)
T ss_pred hcCCc-cccceecCcee-cc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc----HHHHHHHHhh
Confidence 43221 12333333322 11 11 36999998888664211223334789999999999853 3445555555
Q ss_pred hhhhhccCCCCce-EEEEeccCCCC
Q 015946 319 KDSALKSNGQGFQ-TILVTAAIAEL 342 (397)
Q Consensus 319 ~~~~~~~~~~~~q-~i~~SATl~~~ 342 (397)
. ... +++||||....
T Consensus 171 ~---------~~~~~LGLTATp~R~ 186 (442)
T COG1061 171 S---------AAYPRLGLTATPERE 186 (442)
T ss_pred h---------cccceeeeccCceee
Confidence 4 223 99999997744
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=2.5e-13 Score=142.70 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHHHh-CC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 163 VPSEIQCVGIPAVL-NG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~-~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.++++|.+++..+. .| +..++++|||+|||+..+..+.. + +..+|||||+..|+.|..+.|..+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l------------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V------------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h------------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999999877 34 37899999999999997654432 2 346999999999999999998887
Q ss_pred hhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--------CCCCCCcceEEEcCCCccccCCCHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEI 311 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f~~~l 311 (397)
.......+..++|+.... ......|+|+|...+.....+. .+.-....+||+||||++- ...+
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred cCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 644445566666653221 1123679999998775332211 1223467899999999883 4556
Q ss_pred HHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..++..+. ....|+||||+-..
T Consensus 393 r~il~~l~---------a~~RLGLTATP~Re 414 (732)
T TIGR00603 393 RRVLTIVQ---------AHCKLGLTATLVRE 414 (732)
T ss_pred HHHHHhcC---------cCcEEEEeecCccc
Confidence 66776664 34689999999755
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.44 E-value=1.8e-12 Score=143.32 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHh----CC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.++++|.+||..+. .| +.+|++++||||||.+. +.++..+.... ...++|||+|+++|+.|....|.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-------~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-------RFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-------ccCeEEEEecHHHHHHHHHHHHH
Confidence 58999999998765 33 57999999999999884 44455554421 35699999999999999999888
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-----CCCCCCcceEEEcCCCcccc--------
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-----NVSCDDIRYVVLDEADTLFD-------- 304 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-----~~~l~~l~~lVlDEah~~l~-------- 304 (397)
.+.......+..+++....... .......|+|+|...|...+... ...+..+++||+||||+-..
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 7643222122122221111111 12234689999999987765321 24567889999999998531
Q ss_pred -CCC------HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 305 -RGF------GPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 305 -~~f------~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
.+| ...+..++..+ +.-.|+||||...
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF----------dA~~IGLTATP~r 596 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF----------DAVKIGLTATPAL 596 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc----------CccEEEEecCCcc
Confidence 011 23455555533 3468999999764
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.43 E-value=1.4e-12 Score=142.23 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=102.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC
Q 015946 149 KAEMIKAVEKMGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (397)
Q Consensus 149 ~~~l~~~l~~~g~~~~~~iQ~~ai~----~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P 224 (397)
++.+.+.+...||. +++.|.+.+. ++..|+++++.||||+|||++|++|++..+.. +.++||.+|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----------~~~vvi~t~ 300 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----------EKPVVISTN 300 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----------CCeEEEEeC
Confidence 34667778788995 8999998666 45578999999999999999999999886651 348999999
Q ss_pred chhHHHHHHH-HHHHhhhcCC--cceeeecCCCChHH-------------------------------------------
Q 015946 225 TEESADQGFH-MAKFISHCAR--LDSSMENGGVSSKA------------------------------------------- 258 (397)
Q Consensus 225 treLa~Qv~~-~~~~~~~~~~--~~v~~~~g~~~~~~------------------------------------------- 258 (397)
|++|..|+.. .+..+.+..+ ++++.+.|+.++-.
T Consensus 301 t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~ 380 (850)
T TIGR01407 301 TKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKG 380 (850)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCC
Confidence 9999999754 5555554433 45554444332100
Q ss_pred ----------------------------HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 259 ----------------------------LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 259 ----------------------------~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
..+.....++|||+...-|+..+......+..-+++||||||++.+
T Consensus 381 ~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 381 GNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 0000112358999998888777654433456668999999999864
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.5e-11 Score=129.62 Aligned_cols=196 Identities=19% Similarity=0.208 Sum_probs=132.9
Q ss_pred HHHHHHHC-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 152 MIKAVEKM-GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 152 l~~~l~~~-g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
+.+-+.+. || .|+..|+.....+..|++.-+.||||.|||.-.++..+.... .+.+++||+||..|+.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~----------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK----------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh----------cCCeEEEEecCHHHHH
Confidence 34445544 66 899999999999999999999999999999876666655443 4679999999999999
Q ss_pred HHHHHHHHhhhcCC-cceee-ecCCCChHHHHH----HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 231 QGFHMAKFISHCAR-LDSSM-ENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 231 Qv~~~~~~~~~~~~-~~v~~-~~g~~~~~~~~~----~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
|+++.+..++...+ +.+-+ +|+..+...... ..+++.||+|+|..-|...+..- .--+++++++|++|.++-
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHh
Confidence 99999999987666 44433 566555444332 23457999999988776655431 113588999999998775
Q ss_pred CC-----------CHHH-------HHHHHHHhh----------------hhhhccCCCCceEEEEeccCCCC---hhHHH
Q 015946 305 RG-----------FGPE-------ISKILNPLK----------------DSALKSNGQGFQTILVTAAIAEL---SSLME 347 (397)
Q Consensus 305 ~~-----------f~~~-------l~~il~~l~----------------~~~~~~~~~~~q~i~~SATl~~~---~~l~~ 347 (397)
.+ |... +..+...+. ..........-++|+.|||..+. ..+.+
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 43 2221 111111111 00001123457899999999887 46666
Q ss_pred hhhhccCCceeeE
Q 015946 348 CLERDNAGKVTAM 360 (397)
Q Consensus 348 ~l~~~~~~~v~~~ 360 (397)
.|..-.++.....
T Consensus 298 eLlgFevG~~~~~ 310 (1187)
T COG1110 298 ELLGFEVGSGGEG 310 (1187)
T ss_pred HHhCCccCccchh
Confidence 6766655554433
No 104
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.38 E-value=5.3e-12 Score=131.50 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=52.2
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 172 i~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..++..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999999887632 25689999999999999999888776
No 105
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.36 E-value=7e-12 Score=135.57 Aligned_cols=135 Identities=24% Similarity=0.257 Sum_probs=97.9
Q ss_pred HHCCCCCCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~----i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.--|| ..++-|.+.... +..+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHH
Confidence 33467 689999985544 34678899999999999999999988743 256899999999999999
Q ss_pred -HHHHHHhhhcCCcceeeecCCCChHHH-----------------------------------------------HHH--
Q 015946 233 -FHMAKFISHCARLDSSMENGGVSSKAL-----------------------------------------------EDV-- 262 (397)
Q Consensus 233 -~~~~~~~~~~~~~~v~~~~g~~~~~~~-----------------------------------------------~~~-- 262 (397)
...+..+....++++.++.|+.++-.. ...
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 467777777777777666655432100 000
Q ss_pred ----------------------hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 263 ----------------------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 263 ----------------------~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
....++|||+.-.-|+..+.... .+...+++||||||++-+
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 00124889998887777665443 367789999999998753
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.9e-11 Score=130.22 Aligned_cols=208 Identities=13% Similarity=0.101 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhhhcCC
Q 015946 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCAR 244 (397)
Q Consensus 166 ~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~~~~ 244 (397)
....+.+.++..+.-++++|+||||||...-.-+++.... .+..++++=|.|--|..++..+ ..++...|
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~---------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG---------IAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc---------cCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3445555667777889999999999999765555554331 3445666667774445555433 33433334
Q ss_pred cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhc
Q 015946 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK 324 (397)
Q Consensus 245 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~ 324 (397)
-.|++.....+ .......|-++|.|.|++.+.+... ++.+++|||||||.- . -+...++..+......
T Consensus 124 ~~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHER---S--l~tDilLgllk~~~~~ 191 (845)
T COG1643 124 ETVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHER---S--LNTDILLGLLKDLLAR 191 (845)
T ss_pred ceeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhh---h--HHHHHHHHHHHHHHhh
Confidence 33433222111 2234468999999999999998666 899999999999953 1 1222222222221111
Q ss_pred cCCCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCceeeEEeccChHHHHHHHHHHHHcccccCCCC
Q 015946 325 SNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPGS 397 (397)
Q Consensus 325 ~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~p~~ 397 (397)
..+..++|+||||+... .|..+|...|+..+....++|...+-.... ....+..++..+++......+||
T Consensus 192 -rr~DLKiIimSATld~~-rfs~~f~~apvi~i~GR~fPVei~Y~~~~~-~d~~l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 192 -RRDDLKLIIMSATLDAE-RFSAYFGNAPVIEIEGRTYPVEIRYLPEAE-ADYILLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred -cCCCceEEEEecccCHH-HHHHHcCCCCEEEecCCccceEEEecCCCC-cchhHHHHHHHHHHHhccCCCCC
Confidence 11468999999998766 899999989999999999999886543333 22227778888887776666664
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.30 E-value=3.8e-11 Score=127.61 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=98.8
Q ss_pred CcHHHHHHHHHHh----C------CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH
Q 015946 164 PSEIQCVGIPAVL----N------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~------g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~ 233 (397)
+...|..|+..+. . .+..+++.+||||||++.+..+...+.. ...+++|||+|+.+|..|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--------~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--------LKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--------cCCCeEEEEECcHHHHHHHH
Confidence 6778999988753 2 2479999999999999876655443321 24679999999999999999
Q ss_pred HHHHHhhhcCCcceeeecCCCChHHHHHHhc-CCccEEEeChHHHHHHHhcC--CCCCCCc-ceEEEcCCCccccCCCHH
Q 015946 234 HMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDR--NVSCDDI-RYVVLDEADTLFDRGFGP 309 (397)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~--~~~l~~l-~~lVlDEah~~l~~~f~~ 309 (397)
..+..+... +..+..+.......+. ....|+|+|...|...+... .+....- -+||+||||+.. ++.
T Consensus 311 ~~f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~---~~~ 381 (667)
T TIGR00348 311 KEFQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ---YGE 381 (667)
T ss_pred HHHHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc---chH
Confidence 998887532 1111122233323333 23689999999997644331 1111111 289999999853 332
Q ss_pred HHHHHH-HHhhhhhhccCCCCceEEEEeccCCC
Q 015946 310 EISKIL-NPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 310 ~l~~il-~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
+...+ ..+ ++..+++||||.-.
T Consensus 382 -~~~~l~~~~---------p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 382 -LAKNLKKAL---------KNASFFGFTGTPIF 404 (667)
T ss_pred -HHHHHHhhC---------CCCcEEEEeCCCcc
Confidence 33333 344 36789999999753
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.28 E-value=2.6e-10 Score=122.98 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=131.6
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHhC----C--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 149 KAEMIKAVEK-MGLFVPSEIQCVGIPAVLN----G--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 149 ~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~----g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
+......+.+ ++| .-|+=|..||..+.+ + .|=|+||--|-|||.+.+=.+.-.+. .|.+|.|
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------~GKQVAv 648 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------DGKQVAV 648 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------CCCeEEE
Confidence 3444445443 566 569999999999874 3 38999999999999998777766655 4789999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 297 (397)
||||.-||+|-++.|+.-....++++..+..-.+.+++...+ .+.+||||||- .+| +..+.+.++.+||||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL-~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLL-SKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----Hhh-CCCcEEecCCeEEEe
Confidence 999999999999999998888899999998888877776554 35689999993 333 446778999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 298 Eah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
|-|++ |..-..-++.++ .++-++-+|||.=+.
T Consensus 724 EEqRF-----GVk~KEkLK~Lr--------~~VDvLTLSATPIPR 755 (1139)
T COG1197 724 EEQRF-----GVKHKEKLKELR--------ANVDVLTLSATPIPR 755 (1139)
T ss_pred chhhc-----CccHHHHHHHHh--------ccCcEEEeeCCCCcc
Confidence 99984 555566677666 588999999996665
No 109
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2e-10 Score=122.12 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=106.2
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|...--.+..| -|+...||+|||++..+|++..... |..+.|++||..||.+-+..+..
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 575 7899998776666555 4999999999999999999877664 77899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+...+|++|+++.++.+.......+. ++|++||..-+ .+.|+.+ ......+.++||||+|.+|
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999999999999887776655555 89999999886 3334332 1124789999999999875
No 110
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.15 E-value=6.5e-10 Score=118.57 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=128.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhhh
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISH 241 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~ 241 (397)
-.+..+...+.++.+.+.++|+|.||+|||.-.---+++...... ....+|+.-|.|--|..+++.. ...+.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-------~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-------AACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-------CCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 345678888899999999999999999999987666777665532 4556777779888887777654 33344
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~ 321 (397)
..|-.|+.-.+..+. ......+++||-|-|++.+.. .-.+.++.+||+||+|.-.- -.+.+..+++.+...
T Consensus 246 ~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i--~~DflLi~lk~lL~~ 316 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSI--NTDFLLILLKDLLPR 316 (924)
T ss_pred ccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccC--CcccHHHHHHHHhhh
Confidence 445444444333221 112267999999999999987 44578999999999996321 122233333333322
Q ss_pred hhccCCCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCc
Q 015946 322 ALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQ 366 (397)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~ 366 (397)
+ +..++|+||||+. ...|..+|...++..|.+..++|.+
T Consensus 317 ~-----p~LkvILMSAT~d-ae~fs~YF~~~pvi~i~grtfpV~~ 355 (924)
T KOG0920|consen 317 N-----PDLKVILMSATLD-AELFSDYFGGCPVITIPGRTFPVKE 355 (924)
T ss_pred C-----CCceEEEeeeecc-hHHHHHHhCCCceEeecCCCcchHH
Confidence 2 7899999999998 5588888888887777777777665
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.15 E-value=1.1e-09 Score=115.41 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHhCC----CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g----~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+.+-|..++..+... ...++.|.||||||.+|+-.+-..+. .|.++|||+|-.+|..|+...|+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----------cCCEEEEEeccccchHHHHHHHHH
Confidence 5678999999988755 57999999999999999776666665 377999999999999998887766
Q ss_pred hhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccc---cCC---CH
Q 015946 239 ISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF---DRG---FG 308 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l---~~~---f~ 308 (397)
.. +..+..++++.+..+..+. ..+...|+|||-..| ...+.++.+|||||-|.-. +.+ ..
T Consensus 268 rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 268 RF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred Hh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCH
Confidence 44 4688888888877665443 346689999997655 4578999999999999532 112 22
Q ss_pred HHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 309 ~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
.++....... .++++|+-|||-+=
T Consensus 338 RdvA~~Ra~~---------~~~pvvLgSATPSL 361 (730)
T COG1198 338 RDVAVLRAKK---------ENAPVVLGSATPSL 361 (730)
T ss_pred HHHHHHHHHH---------hCCCEEEecCCCCH
Confidence 3333333332 48999999999553
No 112
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.15 E-value=6.2e-10 Score=106.75 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=56.8
Q ss_pred CCcHHHHHHH----HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai----~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|+|.|.+.+ ..+..|.++++.||||+|||++|++|++..+..... ...+.+++|+++|..+..|....++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----RIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----cccccceeEEeccHHHHHHHHHHHHh
Confidence 4699999944 455678999999999999999999999988765321 00234899999999998887666655
Q ss_pred h
Q 015946 239 I 239 (397)
Q Consensus 239 ~ 239 (397)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 113
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.15 E-value=6.2e-10 Score=106.75 Aligned_cols=73 Identities=23% Similarity=0.251 Sum_probs=56.8
Q ss_pred CCcHHHHHHH----HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai----~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|+|.|.+.+ ..+..|.++++.||||+|||++|++|++..+..... ...+.+++|+++|..+..|....++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~----~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE----RIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc----cccccceeEEeccHHHHHHHHHHHHh
Confidence 4699999944 455678999999999999999999999988765321 00234899999999998887666655
Q ss_pred h
Q 015946 239 I 239 (397)
Q Consensus 239 ~ 239 (397)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 114
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.14 E-value=5.5e-10 Score=122.88 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i----~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
|| .+++-|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.++||-++|+.|..|+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---------~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---------KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---------cCCeEEEEcCCHHHHHHHHH
Confidence 66 7899999966554 367899999999999999999999876654 35689999999999999755
No 115
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.11 E-value=8.6e-10 Score=93.19 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=83.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|+-.++-..+|+|||--.+.-++..... ++.++|||.|||.++..+.+.++.. .+++..-..+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--
Confidence 45557889999999999877777766555 5779999999999999988776543 22222111110
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
....+.-|-|.|-+.+.+.+.+ .....+.++||+||||.+ |.. .-...-.+..+.. .....+|++|
T Consensus 68 -----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~------~g~~~~i~mT 133 (148)
T PF07652_consen 68 -----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAE------SGEAKVIFMT 133 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHH------TTS-EEEEEE
T ss_pred -----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHH-HHhhheeHHHhhh------ccCeeEEEEe
Confidence 1123345778898888888766 555789999999999965 221 2222223333321 1357899999
Q ss_pred ccCCCC
Q 015946 337 AAIAEL 342 (397)
Q Consensus 337 ATl~~~ 342 (397)
||-|-.
T Consensus 134 ATPPG~ 139 (148)
T PF07652_consen 134 ATPPGS 139 (148)
T ss_dssp SS-TT-
T ss_pred CCCCCC
Confidence 998755
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.11 E-value=5.9e-10 Score=119.76 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHhCC---C-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG---K-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g---~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
..++.|..++..+..+ . .+++.||||.|||++.+++++..+.... ....++|++.|++.++.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~------~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI------KLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc------cccceEEEEccHHHHHHHHHHHHHh
Confidence 3478999999887743 3 7999999999999999999998876621 1577999999999999999999887
Q ss_pred hhhcCCcceeeecCCCChHHHHHH--------------hcCCccEEEeChHHHHHHHhc-CCCC-C--CCcceEEEcCCC
Q 015946 239 ISHCARLDSSMENGGVSSKALEDV--------------SNAPIGMLIATPSEVLQHIED-RNVS-C--DDIRYVVLDEAD 300 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~--------------~~~~~~IlV~TP~~L~~~l~~-~~~~-l--~~l~~lVlDEah 300 (397)
+....++.....+|.....-.... ......+.++||-.+.-.... ..+. + -....+||||+|
T Consensus 269 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 269 IFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 765544333312332221111000 011234566666555442221 1111 1 123689999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.+-+..-...+..++..+.. -+..+|++|||+|..
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~-------~g~~ill~SATlP~~ 383 (733)
T COG1203 349 LYADETMLAALLALLEALAE-------AGVPVLLMSATLPPF 383 (733)
T ss_pred hhcccchHHHHHHHHHHHHh-------CCCCEEEEecCCCHH
Confidence 87655445555555555543 478999999999988
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.10 E-value=7.2e-10 Score=115.37 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=107.9
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|+ .|+++|..+.-.++.|+ |+...||.|||++..+|++..... |..+.|++|+..||.|-+..+..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHHHH
Confidence 577 79999999999998875 889999999999999999887764 77899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+...+|++|+++.++.+.......+. |||+.||...+ .++|+.+ ......+.+.||||+|.||
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAYA--CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHHc--CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 99999999999999888766555553 79999999876 3333322 1234668899999999876
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=7.2e-10 Score=117.37 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=107.4
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .|+++|..+--++..|+ |+...||+|||++..+|++..... |..+-|++||.-||.|-+..+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHHHH
Confidence 577 79999999888877777 999999999999999999888774 77899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+...+|++|+++.|+.........+ .+||+.||...| .+.|+.+ ......+.+.||||+|.||
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999999987776655555 379999999876 3344332 1124578899999999775
No 119
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.03 E-value=4.8e-09 Score=98.66 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=100.7
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
..|+ .|+++|..++-.+..|+ |+...||-|||++..+|++-..+. |..+-|++.+..||..=+..+.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHHH
Confidence 4577 79999999998887777 999999999999999888877664 6688999999999999888999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHH-HHHhcCC------CCCCCcceEEEcCCCccc
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDRN------VSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~-~~l~~~~------~~l~~l~~lVlDEah~~l 303 (397)
.+...+|+.+++..++.+.......+. ++|+.||...+. +.++... .....+.++||||+|.|+
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999887665444444 589999998874 3443321 125788999999999765
No 120
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.03 E-value=6.7e-09 Score=105.95 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=113.6
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH-HHHhhhcC
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISHCA 243 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~-~~~~~~~~ 243 (397)
+..-.+.+..+.+++-+||.|.||||||.-. | +.+..... . ....+.+.-|.|--|..++.. ....+...
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQi--p--QyL~eaG~----~-~~g~I~~TQPRRVAavslA~RVAeE~~~~l 123 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQI--P--QYLAEAGF----A-SSGKIACTQPRRVAAVSLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccH--h--HHHHhccc----c-cCCcEEeecCchHHHHHHHHHHHHHhCCCc
Confidence 3344566677778889999999999999852 2 22222111 1 222356666777666665543 34444444
Q ss_pred CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-CHHHHHHHHHHhhhhh
Q 015946 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSA 322 (397)
Q Consensus 244 ~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-f~~~l~~il~~l~~~~ 322 (397)
|-.|++...-.+ .......|.+.|-|.|++.+..... +....+|||||||.- . .-+.+.-+++.+.+.+
T Consensus 124 G~~VGY~IRFed------~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHER---sl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 124 GEEVGYTIRFED------STSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHER---SLHTDILLGLLKKILKKR 193 (674)
T ss_pred CceeeeEEEecc------cCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhh---hhHHHHHHHHHHHHHhcC
Confidence 444443322111 1123468999999999998876544 788999999999952 2 2333444444443322
Q ss_pred hccCCCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCc
Q 015946 323 LKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQ 366 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~ 366 (397)
+..++|++|||+... .|..+|...++-.|.+..++|+.
T Consensus 194 -----~~LklIimSATlda~-kfS~yF~~a~i~~i~GR~fPVei 231 (674)
T KOG0922|consen 194 -----PDLKLIIMSATLDAE-KFSEYFNNAPILTIPGRTFPVEI 231 (674)
T ss_pred -----CCceEEEEeeeecHH-HHHHHhcCCceEeecCCCCceeE
Confidence 568999999999754 88888888777777777766665
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.03 E-value=3.6e-09 Score=101.31 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
.+.+|++-.+|+|||+..+..+. .+..... ......+|||||. .+..|....+..+.....+++..+.|.....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~----~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~ 98 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEFP----QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERR 98 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCCT----TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHH
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhccc----cccccceeEeecc-chhhhhhhhhccccccccccccccccccccc
Confidence 45799999999999987655444 3333210 0112249999999 8888888888888765466777777665122
Q ss_pred HHHHHhcCCccEEEeChHHHH-----HHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceE
Q 015946 258 ALEDVSNAPIGMLIATPSEVL-----QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (397)
Q Consensus 258 ~~~~~~~~~~~IlV~TP~~L~-----~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~ 332 (397)
..........+|+|+|.+.+. .... .+.-.+.++||+||+|.+ .+........+..+. ....
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~--k~~~s~~~~~l~~l~---------~~~~ 165 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRL--KNKDSKRYKALRKLR---------ARYR 165 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGG--TTTTSHHHHHHHCCC---------ECEE
T ss_pred cccccccccceeeecccccccccccccccc--ccccccceeEEEeccccc--ccccccccccccccc---------cceE
Confidence 222222345799999999988 1111 111134889999999988 333334444444453 4578
Q ss_pred EEEeccCCCC
Q 015946 333 ILVTAAIAEL 342 (397)
Q Consensus 333 i~~SATl~~~ 342 (397)
+++|||.-..
T Consensus 166 ~lLSgTP~~n 175 (299)
T PF00176_consen 166 WLLSGTPIQN 175 (299)
T ss_dssp EEE-SS-SSS
T ss_pred Eeeccccccc
Confidence 9999996554
No 122
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=5e-09 Score=111.07 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .|+++|...--++..| -|+.+.||-|||+++.+|++-..+. |..+-||+++..||..-+..+..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHH
Confidence 577 7899998877776665 4999999999999999999876664 66799999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-----HHHHhc--CCCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-----LQHIED--RNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-----~~~l~~--~~~~l~~l~~lVlDEah~~l 303 (397)
+...+|+.|+++.++.........+ .|||++||+..| .+.+.. .......+.+.||||+|.+|
T Consensus 149 vy~~LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 149 VHRFLGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHhCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999998877666554444 489999999988 444432 22345788999999999875
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.98 E-value=2.8e-09 Score=112.99 Aligned_cols=131 Identities=19% Similarity=0.244 Sum_probs=103.9
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
..|+ .|+++|..+.-++.. .-|+.+.||.|||+++.+|++-..+ .|..|.||+++..||.+-+..+.
T Consensus 72 ~lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL----------~G~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL----------TGKGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred HhCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh----------cCCceEEEeCCHHHHHHHHHHHH
Confidence 3577 589999887665554 5699999999999999999975544 36679999999999999999999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
.+...+|+.|+++.++.+.......+. ++|+.||...+ .+.|+.+ ......+.+.||||+|.+|
T Consensus 139 pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 139 QIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999999999998888766555554 79999999755 2333322 1234678999999999875
No 124
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.98 E-value=2.5e-09 Score=111.48 Aligned_cols=149 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.++.+|..||..+. .|+ -+|+++.||+|||... +.++..|.+.. .-.++|+|+-+++|+.|.+..+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-------~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-------WVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-------hhheeeEEechHHHHHHHHHHHH
Confidence 56789999997654 454 4999999999999874 66777777643 56799999999999999988877
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-----CCCCCCcceEEEcCCCccccCCCHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-----NVSCDDIRYVVLDEADTLFDRGFGPEIS 312 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-----~~~l~~l~~lVlDEah~~l~~~f~~~l~ 312 (397)
.+..... .+..+.+.... ..+.|.|+|...+...+... .+....+++||+||||+ |......
T Consensus 237 ~~~P~~~-~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~ 303 (875)
T COG4096 237 DFLPFGT-KMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWS 303 (875)
T ss_pred HhCCCcc-ceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhH
Confidence 7654322 22222221111 13789999999998887653 45567799999999995 4455556
Q ss_pred HHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 313 KILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.|+..+... +++++||..+.
T Consensus 304 ~I~dYFdA~----------~~gLTATP~~~ 323 (875)
T COG4096 304 SILDYFDAA----------TQGLTATPKET 323 (875)
T ss_pred HHHHHHHHH----------HHhhccCcccc
Confidence 888887532 33349998775
No 125
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.3e-08 Score=96.41 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=106.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
++++.|+.+-..+. +.++.|+.|-||+|||... .+.++..++ .|.++.+.+|....+..++..++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHH
Confidence 68999998866544 5679999999999999864 455555555 478999999999999999888876
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
-.. +..+.++||+.....+ .+++|+|-..|++.- +.++++||||+|.+- ..-...+...++.-
T Consensus 167 aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP-~~~d~~L~~Av~~a 229 (441)
T COG4098 167 AFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFP-FSDDQSLQYAVKKA 229 (441)
T ss_pred hhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEecccccc-ccCCHHHHHHHHHh
Confidence 433 4677889998765443 579999988887763 457899999999752 11123333333333
Q ss_pred hhhhhccCCCCceEEEEeccCCCC
Q 015946 319 KDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
. ..+.-+|.+|||-++.
T Consensus 230 r-------k~~g~~IylTATp~k~ 246 (441)
T COG4098 230 R-------KKEGATIYLTATPTKK 246 (441)
T ss_pred h-------cccCceEEEecCChHH
Confidence 2 1466899999997754
No 126
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.92 E-value=2.6e-08 Score=106.57 Aligned_cols=64 Identities=28% Similarity=0.453 Sum_probs=53.4
Q ss_pred CCCCCcHHHHHHHHHHh---C------CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 160 GLFVPSEIQCVGIPAVL---N------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~---~------g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
|| ..++-|.+....+. . ++.++|.||||+|||++|++|++..... .+.++||-+.|+.|-.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---------~~k~vVIST~T~~LQe 92 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---------EKKKLVISTATVALQE 92 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---------cCCeEEEEcCCHHHHH
Confidence 67 68999999666554 3 3679999999999999999999987765 3568999999999999
Q ss_pred HHH
Q 015946 231 QGF 233 (397)
Q Consensus 231 Qv~ 233 (397)
|+.
T Consensus 93 QL~ 95 (697)
T PRK11747 93 QLV 95 (697)
T ss_pred HHH
Confidence 974
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=7.4e-10 Score=118.69 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=119.3
Q ss_pred CCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhh
Q 015946 163 VPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~-g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~ 240 (397)
...++|.++++.+.+ +.+|++++|+|||||.|..+.++. . ....++++++|..+.+..+++.+ +.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~--------~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P--------DTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C--------ccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 347899999998875 557999999999999999888775 1 14668999999999997776655 5677
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHH------HHHH
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE------ISKI 314 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~------l~~i 314 (397)
...|+.++.+.|..+..-. +....+|+|+||+++ ++++ ..+.+++.|.||+|.+. ...+.. ++.|
T Consensus 1212 ~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~ig-g~~g~v~evi~S~r~i 1282 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIG-GVYGAVYEVICSMRYI 1282 (1674)
T ss_pred cccCceEEecCCccccchH---HhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhc-ccCCceEEEEeeHHHH
Confidence 7778888888887765542 223358999999996 5553 57889999999999764 224443 4444
Q ss_pred HHHhhhhhhccCCCCceEEEEeccCCCChhHH
Q 015946 315 LNPLKDSALKSNGQGFQTILVTAAIAELSSLM 346 (397)
Q Consensus 315 l~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~ 346 (397)
...+- ..++++++|..+.|..+++
T Consensus 1283 a~q~~--------k~ir~v~ls~~lana~d~i 1306 (1674)
T KOG0951|consen 1283 ASQLE--------KKIRVVALSSSLANARDLI 1306 (1674)
T ss_pred HHHHH--------hheeEEEeehhhccchhhc
Confidence 44443 5889999999999998773
No 128
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.87 E-value=8.2e-08 Score=105.23 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=104.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+.++|..++..++ .|.+.|++-.+|.|||+..+ .++..+... .+....+|||||. .+..+..+.+..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~------~~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEY------RGITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHh------cCCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 68899999998764 57889999999999998753 334444321 1123468999996 556677777777
Q ss_pred hhhcCCcceeeecCCCChHHHHH---HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 239 ISHCARLDSSMENGGVSSKALED---VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
+.. .+.+..++|......... ......+|+|+|.+.+..... .+.--..++|||||||++ ......+..++
T Consensus 241 w~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrI--KN~~Sklskal 314 (1033)
T PLN03142 241 FCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRI--KNENSLLSKTM 314 (1033)
T ss_pred HCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCcccc--CCHHHHHHHHH
Confidence 653 466777777544322211 122457999999998865432 122234679999999988 33344555666
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..+. ....+++|+|.-..
T Consensus 315 r~L~---------a~~RLLLTGTPlqN 332 (1033)
T PLN03142 315 RLFS---------TNYRLLITGTPLQN 332 (1033)
T ss_pred HHhh---------cCcEEEEecCCCCC
Confidence 6654 33468899996544
No 129
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.77 E-value=2e-07 Score=91.97 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=117.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
+..|.+.+.++.-.+.+++..---.+..+...+..+.+++-++++|.||||||.-.--.++...... ...+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------~~~v 94 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------LTGV 94 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh---------ccce
Confidence 7779999999999888887644445556666677778889999999999999987544455544432 2345
Q ss_pred EEEcCchhHHHHHHHHH-HHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 220 IVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~-~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
...-|.|--|.+++... ..+.-..|-.|+......+.. ....-+-.||-|.|++-..... .+....+||+||
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~------~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDe 167 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCT------SPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDE 167 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccC------ChhHHHHHhcchHHHHHHhhCc-ccccccEEEech
Confidence 55557777777665432 222222222222111100000 0000111345555554443332 378899999999
Q ss_pred CCccccCCC-HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhccCCceee
Q 015946 299 ADTLFDRGF-GPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTA 359 (397)
Q Consensus 299 ah~~l~~~f-~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~ 359 (397)
||.- .. -+.+.-+++.+...+ +..++|++|||+... .|..++...|...|-.
T Consensus 168 ahER---tlATDiLmGllk~v~~~r-----pdLk~vvmSatl~a~-Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 168 AHER---TLATDILMGLLKEVVRNR-----PDLKLVVMSATLDAE-KFQRYFGNAPLLAVPG 220 (699)
T ss_pred hhhh---hHHHHHHHHHHHHHHhhC-----CCceEEEeecccchH-HHHHHhCCCCeeecCC
Confidence 9952 22 334444555554333 689999999998755 7777777766544443
No 130
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.74 E-value=2.7e-09 Score=112.96 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=138.9
Q ss_pred CCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 163 VPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
...|+|...+..+. -..++++.+|||+|||++|.+.+...+... .+.+++|++|..+|+............
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--------p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY--------PGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC--------CCccEEEEcCCchhhcccccchhhhcc
Confidence 44456666655444 346799999999999999999888777654 357999999999999887777666555
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
..|+++.-+.|+...... . ....+|+|+||++.-.+.+.+ .-.+.++..+|+||.|++ ..++++.++.|..+.+
T Consensus 999 ~~g~k~ie~tgd~~pd~~--~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPDVK--A-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMN 1074 (1230)
T ss_pred cCCceeEeccCccCCChh--h-eecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEEeeccc
Confidence 558899988888766521 2 233789999999987777643 335789999999999965 4678888888887775
Q ss_pred hhhhccCCCCceEEEEeccCCCChhHHHhhhhccC
Q 015946 320 DSALKSNGQGFQTILVTAAIAELSSLMECLERDNA 354 (397)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~ 354 (397)
. .+...+..+|.+++|--+.|..+++.||...+.
T Consensus 1075 ~-~s~~t~~~vr~~glsta~~na~dla~wl~~~~~ 1108 (1230)
T KOG0952|consen 1075 Y-ISSQTEEPVRYLGLSTALANANDLADWLNIKDM 1108 (1230)
T ss_pred c-CccccCcchhhhhHhhhhhccHHHHHHhCCCCc
Confidence 4 345667789999999999999999999997754
No 131
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.74 E-value=1.7e-07 Score=95.75 Aligned_cols=199 Identities=11% Similarity=0.025 Sum_probs=123.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HH
Q 015946 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KF 238 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~ 238 (397)
.|--.+.++.+.+..|-.++-|||.|.||||||.-..-.++ .+. -.....+-+.-|.|.-|..+++.. ..
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~----edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLY----EDG-----YADNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHH----hcc-----cccCCeeeecCchHHHHHHHHHHHHHH
Confidence 34456778888888888889999999999999986433333 221 001223334447787777766544 34
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
++..+|-.|++.... .........|-+.|-|.|++-.-.. -.|....+||+||||.-. --.+.+.-|++.+
T Consensus 424 M~~~lG~~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERs--lNtDilfGllk~~ 494 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRF------EDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERS--LNTDILFGLLKKV 494 (1042)
T ss_pred hCCccccccceEEEe------eecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcc--cchHHHHHHHHHH
Confidence 433334344332211 1112233568899999987654332 246788999999999631 1233444455544
Q ss_pred hhhhhccCCCCceEEEEeccCCCChhHHHhhhhccCCceeeEEeecCceeeEEeccChHHHHHHHHH
Q 015946 319 KDSALKSNGQGFQTILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVE 385 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 385 (397)
...+ .+..+|+.||||... .|..+|...|.-.|....++|.- +......+|+..+...
T Consensus 495 larR-----rdlKliVtSATm~a~-kf~nfFgn~p~f~IpGRTyPV~~---~~~k~p~eDYVeaavk 552 (1042)
T KOG0924|consen 495 LARR-----RDLKLIVTSATMDAQ-KFSNFFGNCPQFTIPGRTYPVEI---MYTKTPVEDYVEAAVK 552 (1042)
T ss_pred HHhh-----ccceEEEeeccccHH-HHHHHhCCCceeeecCCccceEE---EeccCchHHHHHHHHh
Confidence 4333 488999999998654 88888888887777777777765 2233344555554433
No 132
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.72 E-value=1.9e-07 Score=102.03 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.|.|+|..+...++.. ..+|+.-.+|.|||.-..+.+...+... ...++|||||+ .|+.|....+....
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g--------~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG--------RAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC--------CCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 5899999998777643 3699999999999988766555544432 34589999997 89888777664322
Q ss_pred hcCCcceeeecCCCChHHHHH--HhcCCccEEEeChHHHHHHHhc-CCCCCCCcceEEEcCCCccccCC-CHHHHHHHHH
Q 015946 241 HCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRG-FGPEISKILN 316 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDEah~~l~~~-f~~~l~~il~ 316 (397)
++.+.++.++........ ..-...+++|+|.+.+...-.. ..+.-...++|||||||++-... ........+.
T Consensus 223 ---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 ---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 344444443321110000 0011357999998876542110 11222467899999999985211 1111123333
Q ss_pred HhhhhhhccCCCCceEEEEeccCCCC
Q 015946 317 PLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.+.. ....++++|||.-..
T Consensus 300 ~La~-------~~~~~LLLTATP~q~ 318 (956)
T PRK04914 300 QLAE-------VIPGVLLLTATPEQL 318 (956)
T ss_pred HHhh-------ccCCEEEEEcCcccC
Confidence 3321 234689999997743
No 133
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.72 E-value=9e-08 Score=102.21 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=58.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
...+....+++.|.+.+..+. .|+.+++.||||+|||++|++|++..... .+..+||.++|+.|..|
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---------~~~~viist~t~~lq~q 78 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---------EGKKVIISTRTKALQEQ 78 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---------cCCcEEEECCCHHHHHH
Confidence 334445589999999986543 45669999999999999999999998876 35789999999999999
Q ss_pred HHHHH
Q 015946 232 GFHMA 236 (397)
Q Consensus 232 v~~~~ 236 (397)
+.+..
T Consensus 79 ~~~~~ 83 (654)
T COG1199 79 LLEED 83 (654)
T ss_pred HHHhh
Confidence 76543
No 134
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.3e-07 Score=94.20 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=124.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCC-Cch--HHHHHHHHHHHHHhccc-------c--------------CCCCCCCC
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSG-SGR--TLAYLLPLVQMLRRDEA-------L--------------LPMKPMHP 217 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTG-sGK--Tl~~~lpil~~l~~~~~-------~--------------~~~~~~~~ 217 (397)
..+|+.|.+.+....+.+|++..-.|- .|+ +-.|++.+|+++.+.+. . +...-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 478999999999999999988765543 444 56799999998865322 0 01123478
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCc-ce--------e----------------------eecCCCChHHHH------
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARL-DS--------S----------------------MENGGVSSKALE------ 260 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~-~v--------~----------------------~~~g~~~~~~~~------ 260 (397)
.+|||||+|+-|..+.+.+..+.....- +. . ++.|.++.....
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999998888776322211 00 0 111221111100
Q ss_pred ---HHh--cCCccEEEeChHHHHHHHhcC------CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCC
Q 015946 261 ---DVS--NAPIGMLIATPSEVLQHIEDR------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329 (397)
Q Consensus 261 ---~~~--~~~~~IlV~TP~~L~~~l~~~------~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~ 329 (397)
... -...|||||+|--|.-++.+. .-.++.|.++|||-||.|+ ++-...+..|+..|+..-++..+.+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCCC
Confidence 001 124699999999987777642 1247899999999999887 4446777888888875443322222
Q ss_pred ----------------ceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 330 ----------------FQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 330 ----------------~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
.|+++||+..... ..+...++.+.
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~ 494 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM 494 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 5889999887665 55555555443
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=3.3e-07 Score=97.20 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=104.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|...--.+..|+ |+...||-|||++..+|++-..+. |..|-||+...-||..=...+..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~----------GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT----------GKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc----------CCceEEEecchhhhhhhHHHHHH
Confidence 477 79999999887777775 899999999999999999765553 66788899999999888888999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCC------CCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~------~~l~~l~~lVlDEah~~l 303 (397)
+...+|+.|++...+.........+. |||+.||..-| .+.|+.+. .....+.|.||||+|.+|
T Consensus 142 vy~fLGLsvG~i~~~~~~~~rr~aY~--~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 142 VFNFLGLSVGINKANMDPNLKREAYA--CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHhCCceeeeCCCCChHHHHHhcc--CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 99999999999988777666555553 89999999876 44444321 224678899999999776
No 136
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.62 E-value=4.2e-07 Score=98.17 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=85.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH------h---hhcCCcceee
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF------I---SHCARLDSSM 249 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~------~---~~~~~~~v~~ 249 (397)
.++.+.++||||||.+|+-.++...... +..+.||+||+.+.-..+...+.. + .....+....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~ 131 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYV 131 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEE
Confidence 3799999999999999988887765542 346799999999988877665541 1 1111233334
Q ss_pred ecCCC-------ChHHHHH--Hhc-----CCccEEEeChHHHHHHHh-c---------CC-CCCC---Cc-ceEEEcCCC
Q 015946 250 ENGGV-------SSKALED--VSN-----APIGMLIATPSEVLQHIE-D---------RN-VSCD---DI-RYVVLDEAD 300 (397)
Q Consensus 250 ~~g~~-------~~~~~~~--~~~-----~~~~IlV~TP~~L~~~l~-~---------~~-~~l~---~l-~~lVlDEah 300 (397)
+.++. +.....+ ... +.++|+|.|-+.|..-.. + +. ..+. .. -.||+||.|
T Consensus 132 ~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh 211 (986)
T PRK15483 132 INAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH 211 (986)
T ss_pred EecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC
Confidence 43322 1111111 111 258999999998855221 1 01 1111 11 379999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
++-.. ......| ..++ +.-++.+|||.++
T Consensus 212 ~~~~~--~k~~~~i-~~ln---------pl~~lrysAT~~~ 240 (986)
T PRK15483 212 RFPRD--NKFYQAI-EALK---------PQMIIRFGATFPD 240 (986)
T ss_pred CCCcc--hHHHHHH-HhcC---------cccEEEEeeecCC
Confidence 98432 2233333 3332 1225779999987
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.1e-06 Score=88.10 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH-HHHhhhcCCcce
Q 015946 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISHCARLDS 247 (397)
Q Consensus 169 ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~-~~~~~~~~~~~v 247 (397)
+++..+|..+--|||||.||||||.- +|-. +....-.......+..+=|.-|.|--|..++.. ...++. .+-.|
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ--VPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc--chHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 45566666777799999999999985 2221 111111111111222333455666555544332 223332 23333
Q ss_pred ee--ecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhcc
Q 015946 248 SM--ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 325 (397)
Q Consensus 248 ~~--~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~ 325 (397)
++ -+.| .......|.++|-|-|++-|.+..+ |.....|||||||.- .-+-+.+--++.++-..+.+.
T Consensus 337 sYqIRfd~--------ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHER--SvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 337 SYQIRFDG--------TIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHER--SVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred eEEEEecc--------ccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhc--cchHHHHHHHHHHHHHHHHHH
Confidence 32 2222 2233468999999999999887544 788999999999963 224445555555554444333
Q ss_pred CC-----CCceEEEEeccCCCC
Q 015946 326 NG-----QGFQTILVTAAIAEL 342 (397)
Q Consensus 326 ~~-----~~~q~i~~SATl~~~ 342 (397)
.. ....+|+|||||--.
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVs 427 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVS 427 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEec
Confidence 22 256789999999765
No 138
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.60 E-value=3.5e-07 Score=96.72 Aligned_cols=133 Identities=12% Similarity=0.063 Sum_probs=93.0
Q ss_pred cCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH--
Q 015946 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV-- 262 (397)
Q Consensus 185 apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-- 262 (397)
+-+|||||.+|+-.+-..+.. |.++|||+|...|+.|+...|+.... +..+..++++.+..+..+.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~----------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA----------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc----------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 335999999998777666653 66899999999999999988876542 2468888888877654443
Q ss_pred --hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC---CCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 263 --SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR---GFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 263 --~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~---~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
..+.+.|+|||-..+ ...+.++.+|||||-|.-.-. +...+.+.+.-..-.. .++.+|+-||
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~------~~~~lvLgSa 301 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ------HGCALLIGGH 301 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH------cCCcEEEECC
Confidence 345589999997655 457899999999999843211 1222223332222111 4889999999
Q ss_pred cCCCC
Q 015946 338 AIAEL 342 (397)
Q Consensus 338 Tl~~~ 342 (397)
|-+-.
T Consensus 302 TPSle 306 (665)
T PRK14873 302 ARTAE 306 (665)
T ss_pred CCCHH
Confidence 96644
No 139
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.52 E-value=7.8e-07 Score=96.14 Aligned_cols=188 Identities=17% Similarity=0.120 Sum_probs=105.7
Q ss_pred CCcHHHHHHHHHHhC--------CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN--------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~--------g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
.-+.||-.|+..+.. |--+|--|.||+|||++=+=-+ ..+.. ...+.+..|-.-.|.|-.|.-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd-------~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD-------DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC-------CCCCceEEEEccccceeccchH
Confidence 345699999987763 2247778999999999854322 22222 2246677777777777666544
Q ss_pred HHHHhhhcCCcceeeecCC-------------------------------------------CChHHHHHHhcC------
Q 015946 235 MAKFISHCARLDSSMENGG-------------------------------------------VSSKALEDVSNA------ 265 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~-------------------------------------------~~~~~~~~~~~~------ 265 (397)
.++.-.....-..++++|+ .........+.+
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 4443221111112222222 111111111111
Q ss_pred --CccEEEeChHHHHHHHh--cC-CCCCC--C--cceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 266 --PIGMLIATPSEVLQHIE--DR-NVSCD--D--IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 266 --~~~IlV~TP~~L~~~l~--~~-~~~l~--~--l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
...|+|||+..++.... ++ ...+. . =+.|||||+|.+- ..-...+..++..+.. -+.+++++|
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~-------lG~~VlLmS 631 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGL-------LGSRVLLSS 631 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHH-------cCCCEEEEe
Confidence 24799999999988763 21 11111 1 2579999999762 2233445555554332 478999999
Q ss_pred ccCCCC--hhHHHhhhh----------ccCCceeeEEeecCc
Q 015946 337 AAIAEL--SSLMECLER----------DNAGKVTAMLLEMDQ 366 (397)
Q Consensus 337 ATl~~~--~~l~~~l~~----------~~~~~v~~~~~~v~~ 366 (397)
||||+. ..+...|.. .+...+...+..+++
T Consensus 632 ATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE 673 (1110)
T TIGR02562 632 ATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDE 673 (1110)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecc
Confidence 999998 555555532 133445555666555
No 140
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.46 E-value=1.7e-06 Score=88.32 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH-HHHhhh
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISH 241 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~-~~~~~~ 241 (397)
-.+++-.+.+.++...+-++|.|.||||||.- ||- .|.... -...+..+=+.-|.|--|..++.. ...++.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQ--yL~EaG----ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQ--YLYEAG----YTKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccH--HHHhcc----cccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 44556677788888899999999999999985 332 222211 011333455566888777776543 344444
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~ 321 (397)
.+|-.|++-..-- .-.....-|=+.|-|.|++-+... .+|.+..++||||||.- .-.-+.+-.++..+-+.
T Consensus 337 kLG~eVGYsIRFE------dcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHER--TL~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 337 KLGHEVGYSIRFE------DCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHER--TLHTDILFGLVKDIARF 407 (902)
T ss_pred ccccccceEEEec------cccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhh--hhhhhHHHHHHHHHHhh
Confidence 3333332211100 011122457789999998876643 45788999999999952 11223333344444333
Q ss_pred hhccCCCCceEEEEeccCCCChhHHHhhhhccC
Q 015946 322 ALKSNGQGFQTILVTAAIAELSSLMECLERDNA 354 (397)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~ 354 (397)
+ +...+++.|||+... .|..+|...|+
T Consensus 408 R-----pdLKllIsSAT~DAe-kFS~fFDdapI 434 (902)
T KOG0923|consen 408 R-----PDLKLLISSATMDAE-KFSAFFDDAPI 434 (902)
T ss_pred C-----CcceEEeeccccCHH-HHHHhccCCcE
Confidence 3 789999999998655 77777776553
No 141
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.42 E-value=1.9e-06 Score=77.99 Aligned_cols=124 Identities=23% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 163 VPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~--dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
++++-|.+++..++.+. -++++|+.|+|||.+. -.+...+.. .+.++++++||...+..+....
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~---- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA---------AGKRVIGLAPTNKAAKELREKT---- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh----
Confidence 36889999999997543 4788899999999753 334444444 3679999999999888755441
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCC----CCCCCcceEEEcCCCccccCCCHHHHHHHHH
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN----VSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~----~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 316 (397)
++. ..|-.+++....... ..+...++||||||-.+ -...+..++.
T Consensus 67 ---~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~ 115 (196)
T PF13604_consen 67 ---GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLR 115 (196)
T ss_dssp ---TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHH
T ss_pred ---Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHH
Confidence 111 123222222221111 11566679999999965 2567777887
Q ss_pred HhhhhhhccCCCCceEEEEecc
Q 015946 317 PLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SAT 338 (397)
.+.. .+.++|++.-+
T Consensus 116 ~~~~-------~~~klilvGD~ 130 (196)
T PF13604_consen 116 LAKK-------SGAKLILVGDP 130 (196)
T ss_dssp HS-T--------T-EEEEEE-T
T ss_pred HHHh-------cCCEEEEECCc
Confidence 7763 36788888643
No 142
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.39 E-value=2.6e-07 Score=91.48 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=102.9
Q ss_pred CCcHHHHHHHHHHhC-C--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 163 VPSEIQCVGIPAVLN-G--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~-g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.++|+|..++..+.. | ++-||+.|.|+|||++-+-.++. -...+||||.+---+.|....+..+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-------------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-------------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-------------ecccEEEEecCccCHHHHHHHHHhh
Confidence 678999999998873 3 48999999999999986554442 2458999999999999988888887
Q ss_pred hhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--------CCCCCCcceEEEcCCCccccCCCHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEI 311 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f~~~l 311 (397)
.....-.++.+..+... ....++.|+|+|...+..--++. .+.-....++|+||+|.+-. .-+
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA----~MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA----KMF 439 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH----HHH
Confidence 65545555555544322 33456899999987653221111 11235578999999998743 333
Q ss_pred HHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+.++..+. ..--++++|||-..
T Consensus 440 RRVlsiv~---------aHcKLGLTATLvRE 461 (776)
T KOG1123|consen 440 RRVLSIVQ---------AHCKLGLTATLVRE 461 (776)
T ss_pred HHHHHHHH---------HHhhccceeEEeec
Confidence 44444443 23468999999876
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.38 E-value=6.2e-06 Score=85.62 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+.++|.+.+..+. .|-+.|+.-..|-|||+-- |.++.++.... +...--||+||.-.|.+= .+.++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~------~~~GPfLVi~P~StL~NW-~~Ef~r 238 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK------GIPGPFLVIAPKSTLDNW-MNEFKR 238 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc------CCCCCeEEEeeHhhHHHH-HHHHHH
Confidence 67889998887654 5778999999999999863 44444444321 123345788998877654 344555
Q ss_pred hhhcCCcceeeecCCCChHHHHH---HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 239 ISHCARLDSSMENGGVSSKALED---VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
+.. ++.+.+++|+........ ......+|+|+|.+..+.- ...+.--..+|+||||||++ ..-..-+..++
T Consensus 239 f~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRi--KN~~s~L~~~l 312 (971)
T KOG0385|consen 239 FTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRI--KNEKSKLSKIL 312 (971)
T ss_pred hCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhh--cchhhHHHHHH
Confidence 543 688999999864333221 1234689999999887654 12222234689999999998 44455566777
Q ss_pred HHhhhhhhccCCCCceEEEEeccCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
+.+. ..-.++++.|.=
T Consensus 313 r~f~---------~~nrLLlTGTPL 328 (971)
T KOG0385|consen 313 REFK---------TDNRLLLTGTPL 328 (971)
T ss_pred HHhc---------ccceeEeeCCcc
Confidence 7765 334566777643
No 144
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.38 E-value=1.4e-06 Score=79.89 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~d-vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
++.+-|..|+..++.... .+|.||.|||||....- ++..+..... ......+.++|+++||..-+..+...+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 99999999999965433 3333311000 00022577999999999999998887766
No 145
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.36 E-value=4.5e-06 Score=92.10 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=96.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
+.-+|.--+|||||++....+-..+.. ...|.++||+-.++|-.|....+..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHH
Confidence 458999999999999865444333222 2688999999999999999999999876544322 3344555
Q ss_pred HHHHhcCC-ccEEEeChHHHHHHHhcC-CC-CCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEE
Q 015946 259 LEDVSNAP-IGMLIATPSEVLQHIEDR-NV-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 259 ~~~~~~~~-~~IlV~TP~~L~~~l~~~-~~-~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
..+.+..+ -.|+|+|-..+-..+... .. .-.+=-+||+||||+ +.+|..-..+-..++ +...++|
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR---SQ~G~~~~~~~~~~~---------~a~~~gF 409 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR---SQYGELAKLLKKALK---------KAIFIGF 409 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh---ccccHHHHHHHHHhc---------cceEEEe
Confidence 55555544 489999999998877654 11 112223688999997 345555455555553 5789999
Q ss_pred eccCCCC
Q 015946 336 TAAIAEL 342 (397)
Q Consensus 336 SATl~~~ 342 (397)
|.|.--.
T Consensus 410 TGTPi~~ 416 (962)
T COG0610 410 TGTPIFK 416 (962)
T ss_pred eCCcccc
Confidence 9996544
No 146
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=1.6e-06 Score=93.39 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|+++|...=-++..|+ |+...||-||||+..+|++-..+. |..|-||+..--||..=...+..+...
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~----------G~gVHvVTvNDYLA~RDaewm~p~y~f 205 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT----------GRGVHVVTVNDYLAQRDKEWMNPVFEF 205 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc----------CCCcEEEeechHhhhhhHHHHHHHHHH
Confidence 57888877766666665 899999999999999999877664 556778888899998878888999999
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+|+.|+|+..+.+.......+ .|||..||..-| .+.|+.+ ......+.|.||||+|.+|
T Consensus 206 lGLtVg~i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 206 HGLSVGVILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred hCCeeeeeCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 999999997766665544433 489999999766 3444332 1234678899999999765
No 147
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.23 E-value=6.3e-06 Score=74.70 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=74.4
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH-------HH
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-------FH 234 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv-------~~ 234 (397)
.-.+.-|..++.++....-+++.||.|||||+..+..+++.+... ..-+.+|+-|+.+....+ .+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--------~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG--------EYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT--------S-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC--------CCcEEEEEecCCCCccccccCCCCHHH
Confidence 346789999999999888899999999999999999999888752 455778877776542221 00
Q ss_pred HHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHH
Q 015946 235 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 314 (397)
.+.-+....--....+.+...... .+. ...|-+..+.. ++.. .+.+ .+||||||..+ -..++..+
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~---~~~-~~~Ie~~~~~~----iRGr--t~~~-~~iIvDEaQN~----t~~~~k~i 139 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEE---LIQ-NGKIEIEPLAF----IRGR--TFDN-AFIIVDEAQNL----TPEELKMI 139 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHH---HHH-TTSEEEEEGGG----GTT----B-S-EEEEE-SGGG------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhHHH---Hhh-cCeEEEEehhh----hcCc--cccc-eEEEEecccCC----CHHHHHHH
Confidence 000000000000000111111111 111 22355554332 2222 2332 79999999987 47889999
Q ss_pred HHHhhhhhhccCCCCceEEEEecc
Q 015946 315 LNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 315 l~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
+.++. .++++|++.-.
T Consensus 140 lTR~g--------~~skii~~GD~ 155 (205)
T PF02562_consen 140 LTRIG--------EGSKIIITGDP 155 (205)
T ss_dssp HTTB---------TT-EEEEEE--
T ss_pred HcccC--------CCcEEEEecCc
Confidence 98886 57788887643
No 148
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=5.5e-06 Score=85.23 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN-----GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~-----g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.+.|+|..++..+.- +...|+....|-|||++.+-.++..-.......+.......+|||||- .|+.|....+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 456799999887762 345788888999999987666665443322221211122258999994 57788777776
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHH----HHhcC--CCCCCC--cceEEEcCCCccccCCCHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ----HIEDR--NVSCDD--IRYVVLDEADTLFDRGFGP 309 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~----~l~~~--~~~l~~--l~~lVlDEah~~l~~~f~~ 309 (397)
.-.....++|.+++|.....-..+.+ ..+||||+|..-+.. -...+ ...+.+ ...|||||||.+=+ ...
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN--~~t 480 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN--SNT 480 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc--cch
Confidence 65566678899999876432223333 348999999765543 11111 112223 35799999998843 334
Q ss_pred HHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-----hhHHHhhhhcc
Q 015946 310 EISKILNPLKDSALKSNGQGFQTILVTAAIAEL-----SSLMECLERDN 353 (397)
Q Consensus 310 ~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-----~~l~~~l~~~~ 353 (397)
+-...+..|. ..-..++|+|.=.. -.++++|...|
T Consensus 481 q~S~AVC~L~---------a~~RWclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 481 QCSKAVCKLS---------AKSRWCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred hHHHHHHHHh---------hcceeecccCccccchhHHHHHHHHhcCCC
Confidence 4444444443 23456677764433 34445554443
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.19 E-value=4.3e-06 Score=90.20 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.++++|...=-.+..| -|+.+.||-||||+..+|+.-..+. |..+-||+.+--||..=...+..+...
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~----------GkgVHvVTVNDYLA~RDaewmgply~f 236 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALT----------GNGVHVVTVNDYLAKRDSEWMGPLYEF 236 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHc----------CCCcEEEEechhhhhccHHHHHHHHHH
Confidence 5677777665555555 4999999999999999999887764 556778888999998878888889999
Q ss_pred CCcceeeecC-CCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 243 ARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 243 ~~~~v~~~~g-~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+|+.|+++.. +.+.......+ .|||..||..-| .+.|+.+ ......+.|.||||+|.+|
T Consensus 237 LGLsvg~i~~~~~~~~~rr~aY--~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 237 HGLSVDCIDKHQPNSEARRKAY--NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred hCCceeecCCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 9999998876 33444333333 379999998766 3444332 1224668899999999765
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=98.19 E-value=6.2e-06 Score=86.61 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=93.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCC----cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK----SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~----dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
-.|+.+.. .++...+.-..-.+|+|+|+.||.+.+.|- .-=+.+..|+|||+..+- +.+.+. .
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala-----------~ 206 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA-----------A 206 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh-----------h
Confidence 34555544 345555555556689999999999988541 122334468999988643 333332 3
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH--------------------HHH-----HHhcCCccEEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK--------------------ALE-----DVSNAPIGMLI 271 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~--------------------~~~-----~~~~~~~~IlV 271 (397)
.++|+|+|+.+|..|..+.+..- ....++...++++.... ... +....+.-|++
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 58999999999999976655432 11233333333222111 011 11123457889
Q ss_pred eChHHHHHHHhcCCCCCCCcceEEEcCCCccc
Q 015946 272 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 272 ~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l 303 (397)
+|...+...-.-....+..+++||.||||+-.
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccc
Confidence 99988876655555567889999999999864
No 151
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.14 E-value=2.6e-05 Score=81.38 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=105.8
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 162 FVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
..++++|+..+..+. ++..-|+.-..|-|||.-.+. .|..+.... .-...+|||||.. ++.|....+.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~------k~~~paLIVCP~T-ii~qW~~E~~ 275 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSG------KLTKPALIVCPAT-IIHQWMKEFQ 275 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcc------cccCceEEEccHH-HHHHHHHHHH
Confidence 367889999987665 456688888999999965322 222222110 1235799999964 5667667777
Q ss_pred HhhhcCCcceeeecCCCChH--------HHHH-----HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 238 FISHCARLDSSMENGGVSSK--------ALED-----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~--------~~~~-----~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
.+.. .++|..++|..... .... ....+.+|+|+|...+.- ....+.-...+++|+||.|++=
T Consensus 276 ~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~Ir- 350 (923)
T KOG0387|consen 276 TWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIR- 350 (923)
T ss_pred HhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCccccc-
Confidence 7643 56777777765521 1111 112345799999765421 1112223446899999999983
Q ss_pred CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhccCCceeeE
Q 015946 305 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDNAGKVTAM 360 (397)
Q Consensus 305 ~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~~~~v~~~ 360 (397)
.-..++...+..++ ..+.|++|.|.=.. .+|-.-+....++.....
T Consensus 351 -Npns~islackki~---------T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~ 398 (923)
T KOG0387|consen 351 -NPNSKISLACKKIR---------TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTL 398 (923)
T ss_pred -CCccHHHHHHHhcc---------ccceEEeeCccccchHHHHHHHhhhccCCcccch
Confidence 33445555555554 56677778775544 555555555544444433
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.12 E-value=9.7e-05 Score=78.36 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHhC---CC-------cEEEEcCCCCchHHHHHHHHHHHHHhc-cccCCCCCCCCceEEEcCchhHHHH
Q 015946 163 VPSEIQCVGIPAVLN---GK-------SVVLSSGSGSGRTLAYLLPLVQMLRRD-EALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~---g~-------dvlv~apTGsGKTl~~~lpil~~l~~~-~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.++|+|++.+.-+.. |. ..|+.-..|+|||+.. |+.++.+++. +.. .+.-.++|||+|. .|+.-
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~---~~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQA---KPLINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCc---cccccccEEEccH-HHHHH
Confidence 678999999987652 22 3556666899999975 4455555442 211 1122578999994 57777
Q ss_pred HHHHHHHhhhcCCcceeeecCCCCh--HHHHHHh-----cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 232 GFHMAKFISHCARLDSSMENGGVSS--KALEDVS-----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 232 v~~~~~~~~~~~~~~v~~~~g~~~~--~~~~~~~-----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
..+.|..+.....+....++|.... ......+ .-..-|++-+-+.+.+.+.. +....+++||+||.|++
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl-- 388 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL-- 388 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc--
Confidence 7777777766556777777777663 1111111 11135777787877666553 34567899999999987
Q ss_pred CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhcc
Q 015946 305 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDN 353 (397)
Q Consensus 305 ~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~ 353 (397)
..-...+...+..+. ..+.|++|.|+=.. .++..-|....
T Consensus 389 kN~~s~~~kaL~~l~---------t~rRVLLSGTp~QNdl~EyFnlL~fvr 430 (776)
T KOG0390|consen 389 KNSDSLTLKALSSLK---------TPRRVLLTGTPIQNDLKEYFNLLDFVR 430 (776)
T ss_pred cchhhHHHHHHHhcC---------CCceEEeeCCcccccHHHHHHHHhhcC
Confidence 333334444444443 56789999998765 44444444333
No 153
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.10 E-value=4.5e-06 Score=83.95 Aligned_cols=190 Identities=8% Similarity=-0.062 Sum_probs=133.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH
Q 015946 154 KAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (397)
Q Consensus 154 ~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~ 233 (397)
..+..+.-.....+|..+|..+..|+++++...|.+||.++|.+..+..+... .....+++.|+.++++...
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--------~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC--------HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC--------cccceecchhHHHHhhccC
Confidence 34455555677789999999999999999999999999999999888877654 3457788999999997744
Q ss_pred HHHHHhhh---cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc----CCCCCCCcceEEEcCCCccccCC
Q 015946 234 HMAKFISH---CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED----RNVSCDDIRYVVLDEADTLFDRG 306 (397)
Q Consensus 234 ~~~~~~~~---~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~----~~~~l~~l~~lVlDEah~~l~~~ 306 (397)
+.+..... ...-.++-.+.+..........+.+..++++.|..+...+-- +...+-.+.++++||+|.++ .-
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~-~~ 427 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL-FP 427 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee-cc
Confidence 32221110 001123333444444444445567789999999988766532 33345567889999999764 33
Q ss_pred CHHHHHHHHHHhhhhhhc-cCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 307 FGPEISKILNPLKDSALK-SNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 307 f~~~l~~il~~l~~~~~~-~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
|+..+...+++|.+.+.- ..+.+.|++-.|||+.....+++.+...
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 474 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANL 474 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCC
Confidence 666666666666655432 3456899999999999998888877654
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.09 E-value=1.4e-05 Score=84.46 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=96.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
.-.+|.||.|||||.+..-++-+.+.. ...++|+|+..++|+.+....++...- .++....-.++...
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i-- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII-- 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc--
Confidence 347999999999999876555444332 466899999999999999888765421 12221111111110
Q ss_pred HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHH---HHHHHhhhhhhccCCCCceEEEE
Q 015946 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS---KILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~---~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
-....+-|++..+.|.++.. ..+.+.++|||||+...+..-|.+.++ ..+..+.... .....+|++
T Consensus 118 ----~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI----~~ak~VI~~ 186 (824)
T PF02399_consen 118 ----DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI----RNAKTVIVM 186 (824)
T ss_pred ----cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH----HhCCeEEEe
Confidence 01134677788777766542 246678999999998877554433322 2222222211 034589999
Q ss_pred eccCCCC-hhHHHhhhhcc
Q 015946 336 TAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 336 SATl~~~-~~l~~~l~~~~ 353 (397)
-|++++. .+++..+....
T Consensus 187 DA~ln~~tvdFl~~~Rp~~ 205 (824)
T PF02399_consen 187 DADLNDQTVDFLASCRPDE 205 (824)
T ss_pred cCCCCHHHHHHHHHhCCCC
Confidence 9999988 88888776543
No 155
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.09 E-value=9.1e-05 Score=70.42 Aligned_cols=168 Identities=18% Similarity=0.165 Sum_probs=107.7
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCC
Q 015946 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL----------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (397)
Q Consensus 144 ~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~----------~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 213 (397)
-.+.|++.++. .| .++..|.+++-... .+.-.++--.||.||--..+--|++...+
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------- 89 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------- 89 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------
Confidence 44567765553 33 36888988886654 23458888889999987766667776664
Q ss_pred CCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC---CC----
Q 015946 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR---NV---- 286 (397)
Q Consensus 214 ~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~---~~---- 286 (397)
...++|+|+.+..|-.+..+.++.++.. .+.+..+..-... ....-.-.||++|...|...-..+ ..
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~q 163 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQ 163 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHH
Confidence 2447999999999999999999988654 3333332221000 001123468999988776654321 11
Q ss_pred -------CCCCcceEEEcCCCccccCCC--------HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 287 -------SCDDIRYVVLDEADTLFDRGF--------GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 287 -------~l~~l~~lVlDEah~~l~~~f--------~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+++ .+||+||||.+-+..- +..+..+-+.| ++.+++.+|||-...
T Consensus 164 l~~W~g~dfd--gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L---------P~ARvvY~SATgase 223 (303)
T PF13872_consen 164 LVDWCGEDFD--GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL---------PNARVVYASATGASE 223 (303)
T ss_pred HHHHHhcCCC--ceEEeccchhcCCCCccCccccHHHHHHHHHHHhC---------CCCcEEEecccccCC
Confidence 122 3899999998855432 12334444444 477899999998765
No 156
>PRK10536 hypothetical protein; Provisional
Probab=98.05 E-value=0.00011 Score=68.69 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH-------
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ------- 231 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q------- 231 (397)
.++.-.+..|...+.++.++..+++.|++|||||+..+...++.+... ...+++|.=|+.+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--------~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK--------DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC--------CeeEEEEeCCCCCchhhhCcCCCC
Confidence 356667889999999999888999999999999998877777666432 23355555566543221
Q ss_pred ----HHHHHHHhhhcCCcceeeecCCCChHHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC
Q 015946 232 ----GFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (397)
Q Consensus 232 ----v~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 306 (397)
+.-.+..+...+. .+.|. ......+. ..-.|-|.. +.+++...+ . -.+||||||+.+.
T Consensus 127 ~~eK~~p~~~pi~D~L~----~~~~~---~~~~~~~~~~~~~Iei~~----l~ymRGrtl--~-~~~vIvDEaqn~~--- 189 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLV----RRLGA---SFMQYCLRPEIGKVEIAP----FAYMRGRTF--E-NAVVILDEAQNVT--- 189 (262)
T ss_pred HHHHHHHHHHHHHHHHH----HHhCh---HHHHHHHHhccCcEEEec----HHHhcCCcc--c-CCEEEEechhcCC---
Confidence 1111222111110 01111 11111111 111244443 233443333 3 3799999999763
Q ss_pred CHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 307 FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 307 f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
..++..++.++. .+.++|++.-
T Consensus 190 -~~~~k~~ltR~g--------~~sk~v~~GD 211 (262)
T PRK10536 190 -AAQMKMFLTRLG--------ENVTVIVNGD 211 (262)
T ss_pred -HHHHHHHHhhcC--------CCCEEEEeCC
Confidence 578888998886 5777777653
No 157
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.98 E-value=3.7e-05 Score=75.96 Aligned_cols=108 Identities=15% Similarity=0.261 Sum_probs=66.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~ 259 (397)
-++|.|..|||||+..+- ++..+.. ...+..++++|++..|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~-------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN-------SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------ 56 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc-------cccCCceEEEEecchHHHHHHHHHhhhcc------------------
Confidence 478999999999987543 3333311 12577899999999999887776655320
Q ss_pred HHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-------CHHHHHHHHHH
Q 015946 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-------FGPEISKILNP 317 (397)
Q Consensus 260 ~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-------f~~~l~~il~~ 317 (397)
.......+..+..+...+..........++|||||||+|.+.+ ...++..|++.
T Consensus 57 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 ----PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001223334444433333223446778899999999987632 24566666654
No 158
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.94 E-value=5.4e-05 Score=77.71 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 155 ~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
.+...|+.++..-|..|..+++...=.|++||.|+|||....--+++.+.. ....+||++|+.--+.|+..
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~---------~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---------HAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh---------cCCceEEEcccchhHHHHHH
Confidence 344557778899999999999999999999999999999876666665554 46689999999998888877
Q ss_pred HHHHh
Q 015946 235 MAKFI 239 (397)
Q Consensus 235 ~~~~~ 239 (397)
.+..-
T Consensus 473 KIh~t 477 (935)
T KOG1802|consen 473 KIHKT 477 (935)
T ss_pred HHHhc
Confidence 66543
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=4.3e-05 Score=82.33 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
-|..++|.|.+.+..+. .|+++++.||||+|||++.+.|++....... ..++++|++.|..-..|+.+.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-------~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-------EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-------ccccEEEEcccchHHHHHHHH
Confidence 46667999998876654 6889999999999999999999999876531 347999999999999999999
Q ss_pred HHHhh
Q 015946 236 AKFIS 240 (397)
Q Consensus 236 ~~~~~ 240 (397)
++.+.
T Consensus 80 lk~~~ 84 (705)
T TIGR00604 80 LRKLM 84 (705)
T ss_pred HHhhh
Confidence 98853
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.90 E-value=8e-05 Score=74.10 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHhCCC-----cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNGK-----SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~-----dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.+-|+|.+.+..+.... .-|+.-..|.|||.-.+.-++..+ .+...|||+|+.+|. |..+.+.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-----------~ra~tLVvaP~VAlm-QW~nEI~ 251 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-----------DRAPTLVVAPTVALM-QWKNEIE 251 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-----------ccCCeeEEccHHHHH-HHHHHHH
Confidence 56789999887665433 356667799999976544444422 344599999999986 4445566
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--CC-----------CCCCc--ceEEEcCCCcc
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--NV-----------SCDDI--RYVVLDEADTL 302 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--~~-----------~l~~l--~~lVlDEah~~ 302 (397)
.+.. ..+++..++|........ .+. +.|++++|..-+....+.. ++ .+.++ -.||+||||.+
T Consensus 252 ~~T~-gslkv~~YhG~~R~~nik-el~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 252 RHTS-GSLKVYIYHGAKRDKNIK-ELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred Hhcc-CceEEEEEecccccCCHH-Hhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 6555 356777777765444332 232 4899999998887666542 11 13333 46999999988
Q ss_pred ccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-----hhHHHhhhhcc
Q 015946 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-----SSLMECLERDN 353 (397)
Q Consensus 303 l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-----~~l~~~l~~~~ 353 (397)
-+.. ..-....-.|. ....+++|.|.-.. -.+.++|..+|
T Consensus 329 K~R~--snTArAV~~L~---------tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 329 KDRQ--SNTARAVFALE---------TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred cccc--ccHHHHHHhhH---------hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 5543 22223333332 23456788885544 45555555544
No 161
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.87 E-value=0.00017 Score=76.02 Aligned_cols=140 Identities=19% Similarity=0.167 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCC
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~ 244 (397)
.++|+.|+-..+.++-++|.|+.|||||.+..- ++..+.... .....++++++||..-|..+.+.+.......+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~-----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA-----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc-----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 589999999999999999999999999986432 222222210 01245788899999888877665544322211
Q ss_pred cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC------CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 245 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~------~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
+. . . .......-..|-.+|+...... ..+.-.+++|||||+-.+ | ...+..+++.+
T Consensus 228 ~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al 289 (615)
T PRK10875 228 LT---------D-E----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDAL 289 (615)
T ss_pred cc---------h-h----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhc
Confidence 10 0 0 0000111234444443332111 112334689999999943 3 55677788877
Q ss_pred hhhhhccCCCCceEEEEe
Q 015946 319 KDSALKSNGQGFQTILVT 336 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~S 336 (397)
+ ++.++|++.
T Consensus 290 ~--------~~~rlIlvG 299 (615)
T PRK10875 290 P--------PHARVIFLG 299 (615)
T ss_pred c--------cCCEEEEec
Confidence 6 577888876
No 162
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.87 E-value=4.5e-05 Score=71.15 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCC-ChHHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 213 ~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
....|.+||||.+---|..+.+.++.+.. -+..|+-++... ...++...+. ..++|.||||+||..++..+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34689999999998888888888887741 123455555544 6677777776 46899999999999999999999999
Q ss_pred cceEEEcCCC
Q 015946 291 IRYVVLDEAD 300 (397)
Q Consensus 291 l~~lVlDEah 300 (397)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999754
No 163
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.86 E-value=0.00026 Score=76.32 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=48.5
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
..|+ .+++.|..|+..+..++-+++.|+.|||||.+. -.++..+.... ....+++++||-.-+..+
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-------~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-------GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-------CCceEEEEeCchHHHHHH
Confidence 3565 789999999999998889999999999999754 23333333210 115688889998877654
No 164
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.86 E-value=0.00037 Score=76.83 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=80.9
Q ss_pred HHCCCCCCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~i~~g~d-vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
...|+ .+++-|..|+..++.+++ +++.|+.|+|||.+ +-.++..+.. .+..++.++||---+..+..
T Consensus 341 ~~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---------~G~~V~~~ApTGkAA~~L~e- 408 (988)
T PRK13889 341 EARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA---------AGYEVRGAALSGIAAENLEG- 408 (988)
T ss_pred HhcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEecCcHHHHHHHhh-
Confidence 34566 699999999999998664 78999999999986 3334444332 36789999999876654322
Q ss_pred HHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 236 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
..|+.. .|-.+++.-...+...+...++|||||+-.+ + ...+..++
T Consensus 409 ------~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv-~---~~~m~~LL 454 (988)
T PRK13889 409 ------GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMV-G---TRQLERVL 454 (988)
T ss_pred ------ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccC-C---HHHHHHHH
Confidence 112211 1323332222223334667789999999944 2 33556666
Q ss_pred HHhhhhhhccCCCCceEEEEec
Q 015946 316 NPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SA 337 (397)
+.... .+.++|++.=
T Consensus 455 ~~a~~-------~garvVLVGD 469 (988)
T PRK13889 455 SHAAD-------AGAKVVLVGD 469 (988)
T ss_pred Hhhhh-------CCCEEEEECC
Confidence 55432 4677887763
No 165
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.83 E-value=0.00034 Score=73.43 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCC
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~ 244 (397)
.++|+.|+..++.++-+++.|+.|||||.+..- ++..+..... .....++++++||-.-+..+.+.+........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~----~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSP----KQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhcc----ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 379999999999999999999999999986432 2222222110 00135799999998887776655543221111
Q ss_pred cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc------CCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 245 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~------~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
.. .. ......+-..|-.+++..... ...+.-.+++||||||-.+ + ...+..+++.+
T Consensus 222 ~~----------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al 283 (586)
T TIGR01447 222 AA----------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKAL 283 (586)
T ss_pred cc----------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhc
Confidence 10 00 000011223454444433211 1122345799999999944 3 45677778877
Q ss_pred hhhhhccCCCCceEEEEe
Q 015946 319 KDSALKSNGQGFQTILVT 336 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~S 336 (397)
+ +..++|++.
T Consensus 284 ~--------~~~rlIlvG 293 (586)
T TIGR01447 284 P--------PNTKLILLG 293 (586)
T ss_pred C--------CCCEEEEEC
Confidence 6 577888876
No 166
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.79 E-value=0.00012 Score=73.65 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=71.7
Q ss_pred CccEEEeChHHHHHHHhc------CCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCC------------
Q 015946 266 PIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG------------ 327 (397)
Q Consensus 266 ~~~IlV~TP~~L~~~l~~------~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~------------ 327 (397)
..|||||+|--|...+.. ....|++|.++|||.||.|+ ++-.+.+..++..|+..-.+..+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 369999999999888874 23358999999999999776 66678888888888755433322
Q ss_pred ----CCceEEEEeccCCCC-hhHHHhhhhcc----------C--CceeeEEeecCce
Q 015946 328 ----QGFQTILVTAAIAEL-SSLMECLERDN----------A--GKVTAMLLEMDQA 367 (397)
Q Consensus 328 ----~~~q~i~~SATl~~~-~~l~~~l~~~~----------~--~~v~~~~~~v~~~ 367 (397)
.-+|+|++|+..++. ..+......+. . +.+..+.+.+.|.
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~ 266 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQV 266 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceE
Confidence 237999999999987 44444432221 1 5566666677664
No 167
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.78 E-value=0.0008 Score=72.81 Aligned_cols=136 Identities=16% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
+++..+...-..++ .+++-|..|+..++.+ +-+++.|+.|+|||...- .++..+.. .+..+++++||-
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~---------~g~~V~~~ApTg 406 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA---------AGYRVIGAALSG 406 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh---------CCCeEEEEeCcH
Confidence 34444443333444 6899999999998874 568999999999997633 23333332 366899999997
Q ss_pred hHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC
Q 015946 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (397)
Q Consensus 227 eLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 306 (397)
--+..+.. ..++... |-.+++..+..+...+...++|||||+-.+ +
T Consensus 407 ~Aa~~L~~-------~~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv-~-- 452 (744)
T TIGR02768 407 KAAEGLQA-------ESGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMV-G-- 452 (744)
T ss_pred HHHHHHHh-------ccCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccC-C--
Confidence 76655432 1222211 222222112222334567899999999954 2
Q ss_pred CHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 307 FGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 307 f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
...+..++..... .+.++|++.
T Consensus 453 -~~~~~~Ll~~~~~-------~~~kliLVG 474 (744)
T TIGR02768 453 -SRQMARVLKEAEE-------AGAKVVLVG 474 (744)
T ss_pred -HHHHHHHHHHHHh-------cCCEEEEEC
Confidence 3345556654432 366787776
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.75 E-value=0.00059 Score=62.66 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=92.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~---g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
+|+-...|.+++=.+ +.++ -+++.|.+....+.+ |.|.+.+.-+|.|||.+ ++|++..+..+ ...-
T Consensus 4 ~w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd--------g~~L 72 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD--------GSRL 72 (229)
T ss_pred CCCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC--------CCcE
Confidence 455566666665333 3345 689999999988774 68999999999999977 57777777764 2334
Q ss_pred eEEEcCchhHHHHHHHHHHHh-hhcCCcceee--ecCCCChHH----HH----HHhcCCccEEEeChHHHHHHHhc----
Q 015946 219 AIVLCTTEESADQGFHMAKFI-SHCARLDSSM--ENGGVSSKA----LE----DVSNAPIGMLIATPSEVLQHIED---- 283 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~-~~~~~~~v~~--~~g~~~~~~----~~----~~~~~~~~IlV~TP~~L~~~l~~---- 283 (397)
+.+++| ++|..|.++.+..- +.-.+-++.. +........ .. +.....-.|+|+||+.++.+.-.
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 555555 66888888877543 3322323322 222222111 11 11122346999999998665321
Q ss_pred ---CCC-----------CCCCcceEEEcCCCcccc
Q 015946 284 ---RNV-----------SCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 284 ---~~~-----------~l~~l~~lVlDEah~~l~ 304 (397)
+.. .+.....=|+||+|..+.
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 133445568999998764
No 169
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.74 E-value=0.00035 Score=74.20 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+.+.|..|+..++.. ..++|.||+|||||....--+.+.+ . .+.++++++||..-+.++...+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999998876 5789999999999976544343333 2 356899999999988888776654
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.73 E-value=0.00023 Score=75.31 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhhhcCCccee
Q 015946 170 VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSS 248 (397)
Q Consensus 170 ~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~~~~~~v~ 248 (397)
..+.++..+.-+++.+.||+|||.-|.--+|+.+..+.. +....+.+.-|+|-.+..+.+.+ +.-....+-.|+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~-----g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN-----GASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc-----cccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 344556677779999999999999999999999887542 23345666678887777665543 222222121121
Q ss_pred eecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCC
Q 015946 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ 328 (397)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~ 328 (397)
.-....+. .-..---|+.||-|-+++.+.++ +..+.++++||.|.. +- -.+.+..+++-+.... +
T Consensus 460 y~vRf~Sa-----~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher-dv-~~dfll~~lr~m~~ty-----~ 524 (1282)
T KOG0921|consen 460 YNVRFDSA-----TPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER-DV-DTDFVLIVLREMISTY-----R 524 (1282)
T ss_pred cccccccc-----ccccccceeeeccchhhhhhhhc---ccccccccchhhhhh-cc-chHHHHHHHHhhhccc-----h
Confidence 11110000 00111258999999999988876 455779999999954 22 2444444444443222 5
Q ss_pred CceEEEEeccCCCChhHHHhhh
Q 015946 329 GFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 329 ~~q~i~~SATl~~~~~l~~~l~ 350 (397)
...++++|||+..+ .|...|.
T Consensus 525 dl~v~lmsatIdTd-~f~~~f~ 545 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTD-LFTNFFS 545 (1282)
T ss_pred hhhhhhhhcccchh-hhhhhhc
Confidence 67788888887655 3333333
No 171
>PF13245 AAA_19: Part of AAA domain
Probab=97.62 E-value=0.00031 Score=53.40 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=41.0
Q ss_pred HHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 171 GIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 171 ai~~i~~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
++...+.+. -++|.||.|||||...+--+...+.... . .+.+++|++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----D-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----C-CCCeEEEECCCHHHHHHHHHHH
Confidence 444333344 4566999999999776555555543211 1 2668999999999999987776
No 172
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.61 E-value=0.00029 Score=71.95 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~d-vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
.+.+-|..|+......++ .+++||.|+|||.....-+.+.+.. +.++||++||..-+.-+...
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ----------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc----------CCeEEEEcCchHHHHHHHHH
Confidence 556789999998888765 7899999999999877766666653 67999999999988777664
No 173
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.60 E-value=0.0004 Score=72.79 Aligned_cols=166 Identities=15% Similarity=0.186 Sum_probs=97.7
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+-++|.-.+..+. .+-+.|+.-..|-|||.- +|..+..+.... ....-|||||.-.|-+=. +.+..
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-------~~gpHLVVvPsSTleNWl-rEf~k 469 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-------NPGPHLVVVPSSTLENWL-REFAK 469 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-------CCCCcEEEecchhHHHHH-HHHHH
Confidence 36779988887643 455789999999999965 344455554432 233457888987775432 23333
Q ss_pred hhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHh-cCCCCCCCcceEEEcCCCccccCCCHHHHHH
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~-~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 313 (397)
| +..++|..+||........+.. ..+.+|+|+|......--. +..+.-.++.++|+||+|.+=++. ..-+..
T Consensus 470 w--CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~ 546 (941)
T KOG0389|consen 470 W--CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKH 546 (941)
T ss_pred h--CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHH
Confidence 3 2368899999987655544432 1258999999654321100 112234668899999999664443 223333
Q ss_pred HHHHhhhhhhccCCCCceEEEEeccCC-CC-hhHHHhhh
Q 015946 314 ILNPLKDSALKSNGQGFQTILVTAAIA-EL-SSLMECLE 350 (397)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~-~~-~~l~~~l~ 350 (397)
++.. + .-+.|+++.|.= |. .+++..|.
T Consensus 547 LM~I-~---------An~RlLLTGTPLQNNL~ELiSLL~ 575 (941)
T KOG0389|consen 547 LMSI-N---------ANFRLLLTGTPLQNNLKELISLLA 575 (941)
T ss_pred hccc-c---------ccceEEeeCCcccccHHHHHHHHH
Confidence 3321 1 234566666644 44 44444443
No 174
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.59 E-value=0.00066 Score=67.85 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 161 LFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+..+.|+|.+.+...+ +|..+++.-..|-|||+-.+--+ ..... .--.|||||..-+ ....+.+..+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyra----------EwplliVcPAsvr-ftWa~al~r~ 263 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRA----------EWPLLIVCPASVR-FTWAKALNRF 263 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhh----------cCcEEEEecHHHh-HHHHHHHHHh
Confidence 4567899999987655 67889999999999998754322 22222 2246888995432 2223334443
Q ss_pred hhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.... ..+.++.++...... +-.-..|.|.+.+.+..+-. .+.-...++||+||.|.+=+. ...-...++..+.
T Consensus 264 lps~-~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSI-HPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred cccc-cceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 2211 113344444332211 11113577888776533321 223345789999999966433 2333444444444
Q ss_pred hhhhccCCCCceEEEEeccCC
Q 015946 320 DSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~ 340 (397)
. --.+|++|.|-.
T Consensus 337 ~--------akhvILLSGTPa 349 (689)
T KOG1000|consen 337 V--------AKHVILLSGTPA 349 (689)
T ss_pred H--------hhheEEecCCcc
Confidence 2 237899998854
No 175
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.57 E-value=0.0021 Score=71.44 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 147 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~-g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
++++..+.+....++ .+++-|..++..+.. ++-++++|+.|+|||.+.- .+...+.. .+.+++.++||
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~---------~G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA---------AGYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH---------cCCeEEEEcCc
Confidence 455666666555555 699999999998864 5569999999999997643 33333332 46789999999
Q ss_pred hhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC
Q 015946 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 226 reLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~ 305 (397)
-.-+..+.+ ..|+... |-.+++.....+...+..-++||||||..+ +
T Consensus 435 gkAA~~L~e-------~~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv-~- 481 (1102)
T PRK13826 435 GKAAEGLEK-------EAGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMV-A- 481 (1102)
T ss_pred HHHHHHHHH-------hhCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccC-C-
Confidence 776655422 2233222 222221111122234566789999999944 2
Q ss_pred CCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 306 ~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
..++..+++.+.. .+.++|++.-+
T Consensus 482 --~~~m~~Ll~~~~~-------~garvVLVGD~ 505 (1102)
T PRK13826 482 --SRQMALFVEAVTR-------AGAKLVLVGDP 505 (1102)
T ss_pred --HHHHHHHHHHHHh-------cCCEEEEECCH
Confidence 4566667766642 46788887643
No 176
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.56 E-value=0.001 Score=72.71 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHH--hC--CCcEEEEcCCCCchHHHHHH-HHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAV--LN--GKSVVLSSGSGSGRTLAYLL-PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i--~~--g~dvlv~apTGsGKTl~~~l-pil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.++.+|++.+..+ ++ +-+-|+|--.|-|||+--+- -+..+..+ +.. ...-...-.|||||. .|+-.....+.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r-~s~-~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKR-RSE-SSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhh-ccc-chhhccCCeEEECCc-hhhhHHHHHHH
Confidence 4566898887654 32 34789999999999997543 33333332 110 011123348999995 46655555666
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 317 (397)
.+... ++|..++|.-......+--.+..+|+|+..+-+..-+.. +.-.+..|+|+||-|.| ..-..-+....+.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVi--kN~ktkl~kavkq 1125 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVI--KNSKTKLTKAVKQ 1125 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCccee--cchHHHHHHHHHH
Confidence 66554 677777776655555554555689999998776432221 11134569999999987 3334555555666
Q ss_pred hhhhhhccCCCCceEEEEeccC-CCC----hhHHHhhhhccCC
Q 015946 318 LKDSALKSNGQGFQTILVTAAI-AEL----SSLMECLERDNAG 355 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl-~~~----~~l~~~l~~~~~~ 355 (397)
+. .+.++ .+|.|. -|. -.+..|||+.-.+
T Consensus 1126 L~--------a~hRL-ILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1126 LR--------ANHRL-ILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred Hh--------hcceE-EeeCCCcccCHHHHHHHHHHhcccccC
Confidence 65 34444 456664 344 4566677765433
No 177
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.56 E-value=0.00034 Score=76.36 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=101.6
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHH---HHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 162 FVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLA---YLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~---~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
..++.+|...+..++ .+.++|+.-..|-|||+- |+-.+.+...- .|| .|||+|.-.+..= .+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~---------~gp-flvvvplst~~~W-~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI---------HGP-FLVVVPLSTITAW-ER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc---------cCC-eEEEeehhhhHHH-HH
Confidence 578899999988765 678999999999999964 44444433322 455 4666776555422 23
Q ss_pred HHHHhhhcCCcceeeecCCCChHHHHHHhc----C-----CccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC
Q 015946 235 MAKFISHCARLDSSMENGGVSSKALEDVSN----A-----PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~-----~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~ 305 (397)
.|..+. ..++++++|.......++.+. . ..++|++|-+.++.-... +.--...+++|||||++=
T Consensus 438 ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLk-- 510 (1373)
T KOG0384|consen 438 EFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLK-- 510 (1373)
T ss_pred HHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcC--
Confidence 444443 778999999888777665432 2 378999998877543321 111235689999999983
Q ss_pred CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC-CC-hhHHHhhhh
Q 015946 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA-EL-SSLMECLER 351 (397)
Q Consensus 306 ~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~-~~-~~l~~~l~~ 351 (397)
.-...+...+..+. -+. .++++.|.- |. .++...+..
T Consensus 511 N~~~~l~~~l~~f~--------~~~-rllitgTPlQNsikEL~sLl~F 549 (1373)
T KOG0384|consen 511 NDESKLYESLNQFK--------MNH-RLLITGTPLQNSLKELWSLLHF 549 (1373)
T ss_pred chHHHHHHHHHHhc--------ccc-eeeecCCCccccHHHHHHHhcc
Confidence 33344444455544 233 455666644 44 555544443
No 178
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.54 E-value=0.0016 Score=70.95 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 164 PSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
++.+|...+..+. ++-|-|+.-..|-|||.- .|.++.++..... .=|| -|||+||--+.+=- -.|+++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg-----nWGP-HLIVVpTsviLnWE-MElKRw 687 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG-----NWGP-HLIVVPTSVILNWE-MELKRW 687 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc-----CCCC-ceEEeechhhhhhh-HHHhhh
Confidence 4557777766543 344789999999999975 4566666665421 1244 46777887665431 234554
Q ss_pred hhcCCcceeeecCCCChHHHHH-Hh--cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALED-VS--NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~-~~--~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 316 (397)
+.++++..+||........+ .+ -+..||.|++...+.+-+. .+.-.+.+|+||||||.+ .+|..+--..+-
T Consensus 688 --cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnI--KnfksqrWQAll 761 (1958)
T KOG0391|consen 688 --CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNI--KNFKSQRWQALL 761 (1958)
T ss_pred --CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhh--cchhHHHHHHHh
Confidence 45899999999754433222 22 2346888888776655443 344567889999999998 555554333333
Q ss_pred HhhhhhhccCCCCceEEEEeccCC
Q 015946 317 PLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
.++ .-|.++++.|--
T Consensus 762 nfn---------sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 762 NFN---------SQRRLLLTGTPL 776 (1958)
T ss_pred ccc---------hhheeeecCCch
Confidence 333 235666666633
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.50 E-value=0.00054 Score=72.48 Aligned_cols=141 Identities=15% Similarity=0.202 Sum_probs=77.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH--------hhhcCCcceeeec
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF--------ISHCARLDSSMEN 251 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~--------~~~~~~~~v~~~~ 251 (397)
++=|.+.||||||.+|+=.+...=..- .-.+-||||||.+.-.-++..++. ......+..+.+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~Y--------G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKY--------GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHh--------CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 688999999999999987666543321 244789999999875543333222 2222222222221
Q ss_pred CCCChHHHHHHhcCCccEEEeChHHHHHH------HhcCCCCCC--------------Cc-ceEEEcCCCccccCCCHHH
Q 015946 252 GGVSSKALEDVSNAPIGMLIATPSEVLQH------IEDRNVSCD--------------DI-RYVVLDEADTLFDRGFGPE 310 (397)
Q Consensus 252 g~~~~~~~~~~~~~~~~IlV~TP~~L~~~------l~~~~~~l~--------------~l-~~lVlDEah~~l~~~f~~~ 310 (397)
...........+.+.+++.|-..+..- +........ .+ -.+||||-|+|... ...
T Consensus 148 --~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~ 223 (985)
T COG3587 148 --EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKT 223 (985)
T ss_pred --hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHH
Confidence 122222223345677888776555322 211111111 11 37999999999643 122
Q ss_pred HHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 311 ISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 311 l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+.. +..+. +.-++=++||+++.
T Consensus 224 ~~~-i~~l~---------pl~ilRfgATfkd~ 245 (985)
T COG3587 224 YGA-IKQLN---------PLLILRFGATFKDE 245 (985)
T ss_pred HHH-HHhhC---------ceEEEEecccchhh
Confidence 222 22222 23467799999987
No 180
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.49 E-value=0.00042 Score=66.47 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=53.5
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 164 ~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
+++-|..++.. ...+++|.|+.|||||.+.+--++..+.... ....++|+|+.|+..+..+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47789999888 6789999999999999987776666665431 1355899999999999999888877543
No 181
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.49 E-value=0.00064 Score=72.15 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccc---------cC-------CC----------
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEA---------LL-------PM---------- 212 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------~~-------~~---------- 212 (397)
.|++.|...+..++ ...+.++.+|||+|||++.+=..|........ .. +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999988876655 46789999999999999877555554432110 00 00
Q ss_pred -C-----CCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 213 -K-----PMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 213 -~-----~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
. -.-|+++|-+-|..-..|+.+.++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 12466777777887788887777664
No 182
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0047 Score=61.60 Aligned_cols=132 Identities=9% Similarity=0.093 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc-Cc-hhHHHHHHHHHHHhhhcCCcceeeecCCCC
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSMENGGVS 255 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~-Pt-reLa~Qv~~~~~~~~~~~~~~v~~~~g~~~ 255 (397)
++.++++||||+|||.+..--+........ ..+..+.+++ -| |.-+.. .++.++...++.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~------~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD------DKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVK------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc------cCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceE-------
Confidence 356999999999999886544433222110 0233344333 22 232222 24455444444332
Q ss_pred hHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEE
Q 015946 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
++.++..+...+.. +.+.++|+||++.++.. . ...+..+...+.... .+.--++++
T Consensus 238 --------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~-~-~~~l~el~~~l~~~~----~~~e~~LVl 293 (388)
T PRK12723 238 --------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPK-D-FMKLAEMKELLNACG----RDAEFHLAV 293 (388)
T ss_pred --------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCcc-C-HHHHHHHHHHHHhcC----CCCeEEEEE
Confidence 22245555554443 35688999999997642 1 223444444433211 112367999
Q ss_pred eccCCCC--hhHHHhh
Q 015946 336 TAAIAEL--SSLMECL 349 (397)
Q Consensus 336 SATl~~~--~~l~~~l 349 (397)
|||.... .++...+
T Consensus 294 sat~~~~~~~~~~~~~ 309 (388)
T PRK12723 294 SSTTKTSDVKEIFHQF 309 (388)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9998755 3344444
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.00047 Score=57.40 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpi 199 (397)
+++.+++.|++|+|||.+..-.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 45679999999999998754433
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.0031 Score=52.53 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999643
No 185
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.001 Score=71.09 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=97.3
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|. .++.+|.-.--.+ ...-++-..||-|||++..+|+.-..+. +..+.+|+-.--||.--...+..
T Consensus 77 lg~-~~~dVQliG~i~l--h~g~iaEM~TGEGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~ 143 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL--HLGDIAEMRTGEGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGP 143 (822)
T ss_pred cCC-ChhhHHHhhhhhh--cCCceeeeecCCchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHH
Confidence 366 5666666554443 3456899999999999999998766553 55688888889999888888899
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
+....|+.+++...+.........+. |||..+|-..| .+.+..+ ......+.+.|+||+|-++
T Consensus 144 l~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 144 LYEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999999999999887776666554 79999999877 2333221 1224568899999999765
No 186
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.19 E-value=0.0023 Score=62.09 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCCCCCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~--dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
.|+.--...|..|+..++... =|.+.|+.|||||+..+...+.+..... ...++||.=|+..+.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpvG~dI---- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPVGEDI---- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCccccc----
Confidence 578777788999999998653 3788899999999988888887776532 455777777776665432
Q ss_pred HHhhhcCCcceeeecCCCC---------hHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCC--------C--cceEEEc
Q 015946 237 KFISHCARLDSSMENGGVS---------SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD--------D--IRYVVLD 297 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~---------~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~--------~--l~~lVlD 297 (397)
| .+-|... ..+..+.+.+.- =++-+.|...+.++.+.+. . =.|+|||
T Consensus 293 -------G----fLPG~eEeKm~PWmq~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 293 -------G----FLPGTEEEKMGPWMQAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred -------C----cCCCchhhhccchHHHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 1 1111000 000011111100 0123344444443332211 1 1589999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 298 Eah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
||..+ -..++..|+.++- .+.++|++.
T Consensus 359 EaQNL----TpheikTiltR~G--------~GsKIVl~g 385 (436)
T COG1875 359 EAQNL----TPHELKTILTRAG--------EGSKIVLTG 385 (436)
T ss_pred hhhcc----CHHHHHHHHHhcc--------CCCEEEEcC
Confidence 99987 4889999999886 577888765
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.011 Score=58.79 Aligned_cols=130 Identities=8% Similarity=0.170 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC-c-hh-HHHHHHHHHHHhhhcCCcceeeecCCCC
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-T-EE-SADQGFHMAKFISHCARLDSSMENGGVS 255 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P-t-re-La~Qv~~~~~~~~~~~~~~v~~~~g~~~ 255 (397)
+.++++||||+|||.....-+... .. .+.++.++.- + |. -+.| ++.+....++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~---------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgip--------- 298 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HG---------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFE--------- 298 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HH---------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCc---------
Confidence 468999999999998766554433 22 2444444443 2 21 2223 22332222222
Q ss_pred hHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEE
Q 015946 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
-+.+.+|..+.+.+..-.. ..+.++|+||-+-+... -...+..+.+.+.... +..-++++
T Consensus 299 ------------v~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~-----PdevlLVL 358 (436)
T PRK11889 299 ------------VIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVE-----PDYICLTL 358 (436)
T ss_pred ------------EEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcC-----CCeEEEEE
Confidence 1224577777666643211 12478899998876431 2344555554443211 33346778
Q ss_pred eccCCCC--hhHHHhhhh
Q 015946 336 TAAIAEL--SSLMECLER 351 (397)
Q Consensus 336 SATl~~~--~~l~~~l~~ 351 (397)
|||.... .+++..|..
T Consensus 359 sATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 359 SASMKSKDMIEIITNFKD 376 (436)
T ss_pred CCccChHHHHHHHHHhcC
Confidence 8886654 556666654
No 188
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.0031 Score=56.69 Aligned_cols=99 Identities=15% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc---hhHHHHHHHHHHHhhhcCCcceeeecCCC
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT---EESADQGFHMAKFISHCARLDSSMENGGV 254 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt---reLa~Qv~~~~~~~~~~~~~~v~~~~g~~ 254 (397)
|.=.++.|++|+|||...+- ++..+.. .+.+++|+-|. +....+ +....++...
T Consensus 2 g~i~litG~~GsGKTT~~l~-~~~~~~~---------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~------ 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ-RAYNYEE---------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE------ 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH-HHHHHHH---------cCCeEEEEeccccccccCCc-------EecCCCCccc------
Confidence 34478899999999976543 3333333 35577777662 222111 1111121110
Q ss_pred ChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 255 ~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.+.+..+..+++.+.. .-.+.++|||||++.+- .+++..+++.+.
T Consensus 59 -------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~ 103 (190)
T PRK04296 59 -------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLD 103 (190)
T ss_pred -------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHH
Confidence 0223455566666554 33568899999998541 344666666654
No 189
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.16 E-value=0.0021 Score=63.78 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHHH------hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH-H-H
Q 015946 163 VPSEIQCVGIPAV------LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-F-H 234 (397)
Q Consensus 163 ~~~~iQ~~ai~~i------~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv-~-~ 234 (397)
++++-|+.++..+ ..+.++.+.|+-|+|||..+-. +...+.. .+..+++++||---|..+ - .
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~---------~~~~~~~~a~tg~AA~~i~~G~ 70 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS---------RGKKVLVTAPTGIAAFNIPGGR 70 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHH-HHHHhcc---------ccceEEEecchHHHHHhccCCc
Confidence 3677899998887 6788999999999999975422 2222222 456788888887655543 1 1
Q ss_pred HHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHH
Q 015946 235 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 314 (397)
.+..+. ++.+.. . .... +.+.+. ......+..+++||+||+- |+.......+...
T Consensus 71 T~hs~f---~i~~~~----~-----------~~~~--~~~~~~----~~~~~~l~~~~~lIiDEis-m~~~~~l~~i~~~ 125 (364)
T PF05970_consen 71 TIHSFF---GIPINN----N-----------EKSQ--CKISKN----SRLRERLRKADVLIIDEIS-MVSADMLDAIDRR 125 (364)
T ss_pred chHHhc---Cccccc----c-----------cccc--cccccc----chhhhhhhhheeeeccccc-chhHHHHHHHHHh
Confidence 111111 111100 0 0000 011111 1112347889999999998 5445566667776
Q ss_pred HHHhhh
Q 015946 315 LNPLKD 320 (397)
Q Consensus 315 l~~l~~ 320 (397)
++.+..
T Consensus 126 lr~i~~ 131 (364)
T PF05970_consen 126 LRDIRK 131 (364)
T ss_pred hhhhhc
Confidence 766654
No 190
>PRK08181 transposase; Validated
Probab=97.09 E-value=0.011 Score=56.02 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=28.6
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
+-.++++++.||+|+|||-....- ...+.. .+..++++ +..+|+.++
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~---------~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAI-GLALIE---------NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHH-HHHHHH---------cCCceeee-eHHHHHHHH
Confidence 346789999999999999544322 222222 24445444 455666554
No 191
>PHA02533 17 large terminase protein; Provisional
Probab=97.05 E-value=0.0091 Score=62.13 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|.|+|...+..+..++-.++..+-..|||.+.+..++...... .+..+++++|++..|..+++.++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~--------~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN--------KDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57899999998876667677888888999998876665554432 3558999999999999988887765443
Q ss_pred CC--cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 243 AR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 243 ~~--~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
.. +....... ....-.+.++..|.+.|-.. +...=.+..++|+||+|.+- .+...+..+...+..
T Consensus 131 ~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~--~~~e~~~ai~p~las 197 (534)
T PHA02533 131 LPDFLQPGIVEW----NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP--NFIDFWLAIQPVISS 197 (534)
T ss_pred CHHHhhcceeec----CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC--CHHHHHHHHHHHHHc
Confidence 21 11110000 00001123455554444221 11122346789999999763 334444444444431
Q ss_pred hhhccCCCCceEEEEeccCC
Q 015946 321 SALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~ 340 (397)
+...+++.+|..-+
T Consensus 198 ------g~~~r~iiiSTp~G 211 (534)
T PHA02533 198 ------GRSSKIIITSTPNG 211 (534)
T ss_pred ------CCCceEEEEECCCc
Confidence 12346777776643
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.96 E-value=0.0027 Score=52.32 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
+..+++.||+|+|||.....-+ ..+.. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~---------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP---------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC---------CCCCEEEECCEEccc
Confidence 5679999999999998654322 22211 112567777665543
No 193
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.90 E-value=0.0044 Score=63.84 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhC-----C----CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 166 EIQCVGIPAVLN-----G----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 166 ~iQ~~ai~~i~~-----g----~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
|||...+..++. | +.+++.-|-|.|||.....-++..+.-.. ..+..+++++++++.|..++..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g------~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG------EPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC------ccCceEEEEeCCHHHHHHHHHHH
Confidence 578877777662 2 25888889999999877666665554431 25778999999999999999988
Q ss_pred HHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc--CCCCCCCcceEEEcCCCccccCCCHHHHHHH
Q 015946 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~--~~~~l~~l~~lVlDEah~~l~~~f~~~l~~i 314 (397)
..+.......... .+ ..... ...-.|..-..+.+...+.. ...+=.+..++|+||+|.+-+.. .+..+
T Consensus 75 ~~~i~~~~~l~~~-~~-----~~~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~---~~~~l 144 (477)
T PF03354_consen 75 KKMIEASPELRKR-KK-----PKIIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE---LYDAL 144 (477)
T ss_pred HHHHHhChhhccc-hh-----hhhhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH---HHHHH
Confidence 8776542211000 00 00000 00112333222333333322 12222357899999999875432 22222
Q ss_pred HHHhhhhhhccCCCCceEEEEe
Q 015946 315 LNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 315 l~~l~~~~~~~~~~~~q~i~~S 336 (397)
..-+.. .++++++.+|
T Consensus 145 ~~g~~~------r~~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGA------RPNPLIIIIS 160 (477)
T ss_pred Hhhhcc------CCCceEEEEe
Confidence 222221 1477777776
No 194
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.89 E-value=0.00085 Score=59.43 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=58.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH
Q 015946 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (397)
Q Consensus 182 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 261 (397)
++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-++.+++.+.......+++..... .......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh---------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccc
Confidence 578999999999876655443332 2358999999999998887766554443343320000 0000000
Q ss_pred HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 262 ~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
...+...|-+..|..+... ....++||||||=.+ -.+.+..++. ....++||.|+..
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~------------~~~~vv~stTi~G 125 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLR------------RFPRVVFSTTIHG 125 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC------------CSSEEEEEEEBSS
T ss_pred cccccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHh------------hCCEEEEEeeccc
Confidence 1112356667777665322 224589999999866 2444544442 4457788999987
Q ss_pred C
Q 015946 342 L 342 (397)
Q Consensus 342 ~ 342 (397)
.
T Consensus 126 Y 126 (177)
T PF05127_consen 126 Y 126 (177)
T ss_dssp T
T ss_pred c
Confidence 7
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.89 E-value=0.0051 Score=66.14 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 161 LFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~d-vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+..+..-|++|+-.++..+| .+|.|=.|||||......+-- +.. .+..+|+.+=|..-+.-+.-.++.+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIki-L~~---------~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKI-LVA---------LGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHH-HHH---------cCCeEEEEehhhHHHHHHHHHHhcc
Confidence 34678899999999887776 788888999999865433322 222 4668888888877666554444433
Q ss_pred hhcC---C----c----ceeeecCCCChHH--HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccc
Q 015946 240 SHCA---R----L----DSSMENGGVSSKA--LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 240 ~~~~---~----~----~v~~~~g~~~~~~--~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l 303 (397)
.... | + .-.+...+.+... ......+.+.||.||--.+.+.+ +..+.++|.|||||-+++
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 2110 0 0 0000011111111 11122345789999865554333 334668999999999875
No 196
>PRK06526 transposase; Provisional
Probab=96.88 E-value=0.0096 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.6
Q ss_pred HhCCCcEEEEcCCCCchHHHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~l 197 (397)
+..+.+++++||+|+|||....-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 44678999999999999976543
No 197
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.86 E-value=0.0068 Score=57.39 Aligned_cols=173 Identities=15% Similarity=0.174 Sum_probs=79.8
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 151 ~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
+++++|...|+....+.--..+.-+..|.-+++.|++|+|||...+--+...+.. .+..++|++- .+-..
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---------~g~~vl~iS~-E~~~~ 72 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---------HGVRVGTISL-EEPVV 72 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---------cCceEEEEEc-ccCHH
Confidence 4455555334433333222233345577889999999999997554444443332 2556777753 22334
Q ss_pred HHHHHHHHhhhcCCcceeeecCCCChHHHH---HHhcCCccE-EEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 231 QGFHMAKFISHCARLDSSMENGGVSSKALE---DVSNAPIGM-LIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 231 Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~I-lV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
++...+........+............... ..+.....+ ++- |+..+...+..-.. -..+++||||.++.
T Consensus 73 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~ 151 (271)
T cd01122 73 RTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSI 151 (271)
T ss_pred HHHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHH
Confidence 444433322111122111000011111111 112111112 222 45555555543111 13688999999998
Q ss_pred cccCC-----CHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 302 LFDRG-----FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 302 ~l~~~-----f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
+.... -...+..++..|...... .++-+++++.
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~L~~la~~---~~vtvll~sq 189 (271)
T cd01122 152 MVSDERASGDERKALDEIMTKLRGFATE---HGIHITLVSH 189 (271)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHHHH---hCCEEEEEec
Confidence 76432 122344555555433211 2555666653
No 198
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.86 E-value=0.035 Score=51.07 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCcceEEEcCCCccccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 289 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++||||++|.+.... +...+-.++..+.. .+.|+|+.|...|..
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-------~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-------SGKQLILTSDRPPSE 143 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-------TTSEEEEEESS-TTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-------hCCeEEEEeCCCCcc
Confidence 468899999999874332 34455555555543 356888888777665
No 199
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.83 E-value=0.018 Score=58.26 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~ 201 (397)
|+.+++.||||+|||...+--+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999876544333
No 200
>PRK06893 DNA replication initiation factor; Validated
Probab=96.80 E-value=0.0073 Score=55.94 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=30.1
Q ss_pred CCcceEEEcCCCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 289 DDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.+.++|||||+|.+... .+...+..++..+.. .+.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-------~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-------QGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-------cCCcEEEEeCCCChH
Confidence 46789999999987532 234445555554432 245677888887655
No 201
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.80 E-value=0.07 Score=56.33 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=84.6
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCc--------c
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL--------D 246 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~--------~ 246 (397)
.+..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.+++..+..+....+. .
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISF---------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHh---------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 3455678889999999999877666654432 2568999999999999988877666553321 1
Q ss_pred eeeecCCCChHHHH--HHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhh
Q 015946 247 SSMENGGVSSKALE--DVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 323 (397)
Q Consensus 247 v~~~~g~~~~~~~~--~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~ 323 (397)
+..+.|+...-... .... .+..|..++-. .+...-...++||||||..+- .+.+..|+-.+..
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~----~~~l~aIlP~l~~--- 320 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN----PGALLSVLPLMAV--- 320 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC----HHHHHHHHHHHcc---
Confidence 11111211000000 0000 00122222111 122222356899999999773 3566666666642
Q ss_pred ccCCCCceEEEEeccCCCC--hhHHHhhhh
Q 015946 324 KSNGQGFQTILVTAAIAEL--SSLMECLER 351 (397)
Q Consensus 324 ~~~~~~~q~i~~SATl~~~--~~l~~~l~~ 351 (397)
.+.+++++|.+-+.. ..++..+..
T Consensus 321 ----~~~k~IiISS~~~~~s~tS~L~nLk~ 346 (752)
T PHA03333 321 ----KGTKQIHISSPVDADSWISRVGEVKD 346 (752)
T ss_pred ----CCCceEEEeCCCCcchHHHHhhhhcc
Confidence 356788888876544 444444443
No 202
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.011 Score=50.39 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
+++.|++|+|||.....-+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----------cCCEEEEEECCcchH
Confidence 689999999999865443333222 245677766554443
No 203
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0063 Score=60.32 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=37.4
Q ss_pred cccccCCCCHHHHHHHHHC---C--CCCC---cHHHHHHHHH----H-------hCCCcEEEEcCCCCchHHHHHHHHHH
Q 015946 141 SSFQELGLKAEMIKAVEKM---G--LFVP---SEIQCVGIPA----V-------LNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~---g--~~~~---~~iQ~~ai~~----i-------~~g~dvlv~apTGsGKTl~~~lpil~ 201 (397)
..+...|+++.+.+.|-+. + ...+ ..+....+.. + ..|..++++||||+|||.....-+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566778888887776432 1 2121 2222222211 1 13668999999999999987655544
Q ss_pred HH
Q 015946 202 ML 203 (397)
Q Consensus 202 ~l 203 (397)
.+
T Consensus 161 ~~ 162 (374)
T PRK14722 161 CV 162 (374)
T ss_pred HH
Confidence 43
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=96.72 E-value=0.028 Score=55.10 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc--h-hHHHHHHHHHHHhhhcCCcceeeecCCCC
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT--E-ESADQGFHMAKFISHCARLDSSMENGGVS 255 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt--r-eLa~Qv~~~~~~~~~~~~~~v~~~~g~~~ 255 (397)
.-+++.|++|+|||....-.+. .+.. .+.+++++... | .-+.|. ..+....++.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~---------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK---------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGA- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH---------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCC-
Confidence 3588999999999987554442 3332 24455555433 2 223443 333333454433211111
Q ss_pred hHHHHHHhcCCccEEEeChHH-HHHHHhcCCCCCCCcceEEEcCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEE
Q 015946 256 SKALEDVSNAPIGMLIATPSE-VLQHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTI 333 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~TP~~-L~~~l~~~~~~l~~l~~lVlDEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i 333 (397)
.|.. +.+.+... ...+.++|++|.+.++.. ..+..++..+.+.+. +..-++
T Consensus 206 -----------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--------pd~~iL 258 (336)
T PRK14974 206 -----------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--------PDLVIF 258 (336)
T ss_pred -----------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--------CceEEE
Confidence 1111 11222210 113457999999987642 234455555555443 566788
Q ss_pred EEeccCCCC-hhHHHhhh
Q 015946 334 LVTAAIAEL-SSLMECLE 350 (397)
Q Consensus 334 ~~SATl~~~-~~l~~~l~ 350 (397)
+++||.++. ...+..|.
T Consensus 259 Vl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 259 VGDALAGNDAVEQAREFN 276 (336)
T ss_pred eeccccchhHHHHHHHHH
Confidence 889988765 33344443
No 205
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.71 E-value=0.0049 Score=58.55 Aligned_cols=49 Identities=14% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 285 ~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.......+.|||||||.|... -...+...+.... ...++++++..++.-
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s--------~~trFiLIcnylsri 172 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFS--------RTTRFILICNYLSRI 172 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccc--------cceEEEEEcCChhhC
Confidence 345667799999999988532 3455555665543 467888888777655
No 206
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.68 E-value=0.0023 Score=64.90 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
+=++-+|||.||||.- +|+++.. ....+|..|.|-||..+++.++.. |+.+-.++|......
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~----------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKS----------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhh----------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 3477789999999975 4555543 446899999999999999988876 455555555432221
Q ss_pred HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHH
Q 015946 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 313 (397)
... .+.++.+=||-+++ .. -...++.||||+..|-|..++.....
T Consensus 254 ~~~--~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwAWTr 298 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWAWTR 298 (700)
T ss_pred CCC--CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchHHHH
Confidence 111 12356677776653 11 24468899999998887766555443
No 207
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.67 E-value=0.019 Score=66.24 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHH--HHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAY--LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~--~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.+++-|..|+..++.+ +-++|+|..|+|||.+. ++-++..+... .+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~--------~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES--------ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc--------cCceEEEEechHHHHHHH
Confidence 6899999999999854 67999999999999874 23333332221 356788899998877665
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.66 E-value=0.044 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
..+++.|++|+|||.... .+...+.
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~ 124 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELL 124 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 479999999999997543 3334443
No 209
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0029 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=36.6
Q ss_pred cccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhc
Q 015946 137 AEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRD 206 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~ 206 (397)
+..+.+|+++++++-+.+.+.. .| =+||.||||||||.. +..++.++.++
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4567789999998877764331 23 389999999999987 35577777764
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.60 E-value=0.049 Score=55.85 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
|+-++++||||+|||.+...-+....... +....+||-+-+-.+. ..+.++.++...++.+..........
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-------G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~Dl~ 326 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-------GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAADLR 326 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-------CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCchhHH
Confidence 45688999999999998765554333321 0111233333332121 23445555555565544433333332
Q ss_pred HHHHHhcCCccEEEeChHHH
Q 015946 258 ALEDVSNAPIGMLIATPSEV 277 (397)
Q Consensus 258 ~~~~~~~~~~~IlV~TP~~L 277 (397)
.....+...-.++|-|+|+.
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23333444456888899855
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.60 E-value=0.023 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.+..+++.|++|+|||.....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999976543
No 212
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.024 Score=60.88 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQM 202 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~ 202 (397)
|+-++++||||+|||.++..-+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4458899999999998876555443
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.58 E-value=0.0076 Score=60.85 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 015946 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 164 ~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
+-......+..+..++++++.|++|+|||....
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344555566777789999999999999997653
No 214
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.54 E-value=0.073 Score=56.91 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=93.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~i~~g~--dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~ 233 (397)
+.....+....-|.+.+..++.++ -+++.|.-|-|||.+.-|.+....... ...+++|.+|+.+-++.++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--------~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--------GSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--------CCceEEEeCCCHHHHHHHH
Confidence 444445555555555666666543 589999999999999887773332221 1468999999999999988
Q ss_pred HHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHH
Q 015946 234 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (397)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 313 (397)
..+..-....|++-.+...... .......+...|=+..|.... .. -++||||||=.+ --+-+..
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHHHH
Confidence 8776655555544222211100 000011122335556665431 11 679999999866 3555666
Q ss_pred HHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 314 ILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
++... +.++||.|+...
T Consensus 343 l~~~~------------~rv~~sTTIhGY 359 (758)
T COG1444 343 LLRRF------------PRVLFSTTIHGY 359 (758)
T ss_pred HHhhc------------CceEEEeeeccc
Confidence 66543 688899999877
No 215
>PRK08727 hypothetical protein; Validated
Probab=96.53 E-value=0.035 Score=51.54 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
..+++.|++|+|||-..
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999543
No 216
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0047 Score=63.30 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=82.7
Q ss_pred EEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH-HHhhhcCCcceeeecCCCChHH---
Q 015946 183 LSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKA--- 258 (397)
Q Consensus 183 v~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~~~~~~v~~~~g~~~~~~--- 258 (397)
..+.||||||++.+--||+...+ ....-|+.|.....+......+ ..+....-+.-.+.+++....-
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 45789999999998888887765 2334566665554443322211 1110000001111111111100
Q ss_pred -HHHHhcCCccEEEeChHHHHHHHhcC---CC---CCCCcce-EEEcCCCccccCC---CHHHHHHHH---HHhhhhhhc
Q 015946 259 -LEDVSNAPIGMLIATPSEVLQHIEDR---NV---SCDDIRY-VVLDEADTLFDRG---FGPEISKIL---NPLKDSALK 324 (397)
Q Consensus 259 -~~~~~~~~~~IlV~TP~~L~~~l~~~---~~---~l~~l~~-lVlDEah~~l~~~---f~~~l~~il---~~l~~~~~~ 324 (397)
....-+.++.|+.+|...|...+.+. .+ ++.+.++ ++-||||++-... ..+....+. ..+. .. .
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~-la-~ 150 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK-LA-L 150 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH-HH-H
Confidence 00012356789999999998777542 23 3444444 4569999875322 111111111 1110 00 1
Q ss_pred cCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 325 SNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 325 ~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
..+++--++.+|||++...++...|...
T Consensus 151 ~~nkd~~~lef~at~~k~k~v~~ky~dk 178 (812)
T COG3421 151 EQNKDNLLLEFSATIPKEKSVEDKYEDK 178 (812)
T ss_pred hcCCCceeehhhhcCCccccHHHHhccc
Confidence 2345667889999999887777776643
No 217
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.53 E-value=0.031 Score=65.27 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.+++.|..|+..++.+ +-++|+|..|+|||.+.- .++..+..-. ...+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~-----~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP-----ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh-----cccCceEEEECCcHHHHHHH
Confidence 6899999999999975 569999999999997642 2222222100 11355788899998777654
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.52 E-value=0.051 Score=48.05 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=31.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+++.|++|+|||...+--+...+. .+..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999865444444332 3557777754 45566666666555
No 219
>PRK08116 hypothetical protein; Validated
Probab=96.51 E-value=0.06 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
..+++.|++|+|||.... .+...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 359999999999997544 35555544
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.48 E-value=0.015 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQM 202 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~ 202 (397)
-++++||||+|||.+.+--+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHH
Confidence 37899999999998865544443
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.48 E-value=0.018 Score=55.05 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=61.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccC--CCCCCCCceEEEcCchhHHHHHHHHH-HHhhhcCCcceeeecCCCC
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVS 255 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~--~~~~~~~~~lvl~PtreLa~Qv~~~~-~~~~~~~~~~v~~~~g~~~ 255 (397)
.+++++|+||.|||.+. ..+....... .....-|.++|-+|...-....+..+ ..++.- ++ ..
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--~~------~~- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP--YR------PR- 127 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc--cC------CC-
Confidence 48999999999999843 4333221111 11122366677777776555544432 332211 10 00
Q ss_pred hHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEE
Q 015946 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
.+...+..... ..+..-++++|||||+|.++... ...-+.+++.++... +.-.+.+|++
T Consensus 128 ----------------~~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~---NeL~ipiV~v 186 (302)
T PF05621_consen 128 ----------------DRVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLG---NELQIPIVGV 186 (302)
T ss_pred ----------------CCHHHHHHHHH-HHHHHcCCcEEEeechHHHhccc-HHHHHHHHHHHHHHh---hccCCCeEEe
Confidence 01111111111 11223568999999999998655 333333444443322 2235666666
No 222
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.42 E-value=0.046 Score=65.13 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.+++-|..++..++.. +-.++.|+.|+|||.+.- .++..+.. .+..+++++||-.-+....+..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~---------~G~~V~~lAPTgrAA~~L~e~~---- 494 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE---------QGYEIQIITAGSLSAQELRQKI---- 494 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHh----
Confidence 5889999999998865 569999999999997632 23333322 4678999999987666544321
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
++....+ ......+.. ..-..|...++ +....+..-++||||||-.+. ...+..+++....
T Consensus 495 ---g~~A~Ti------~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~ 555 (1960)
T TIGR02760 495 ---PRLASTF------ITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQ 555 (1960)
T ss_pred ---cchhhhH------HHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhh
Confidence 1111000 001111111 01122333332 222345667899999999552 4566777766542
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.+.++|++.-+
T Consensus 556 -------~garvVlvGD~ 566 (1960)
T TIGR02760 556 -------HNSKLILLNDS 566 (1960)
T ss_pred -------cCCEEEEEcCh
Confidence 47899988743
No 223
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.40 E-value=0.062 Score=56.53 Aligned_cols=144 Identities=13% Similarity=0.113 Sum_probs=89.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcC--CcceeeecCCCCh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA--RLDSSMENGGVSS 256 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~--~~~v~~~~g~~~~ 256 (397)
+-.++..|--.|||+... +++..+... ..+..+++++|.+..++.++..+..+.... +..+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 457889999999999766 666655532 147899999999999999988877654321 111111122 110
Q ss_pred HHHHHHhcCC--ccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEE
Q 015946 257 KALEDVSNAP--IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 334 (397)
Q Consensus 257 ~~~~~~~~~~--~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~ 334 (397)
.....++ ..|.+++- -..+...=..++++|||||+.+- ...+..++-.+.. .++++|.
T Consensus 326 ---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk----~~al~~ilp~l~~-------~n~k~I~ 385 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR----PDAVQTIMGFLNQ-------TNCKIIF 385 (738)
T ss_pred ---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC----HHHHHHHHHHHhc-------cCccEEE
Confidence 0011112 13444421 11223334578999999999773 4677777766653 4889999
Q ss_pred EeccCCCC--hhHHHhhhh
Q 015946 335 VTAAIAEL--SSLMECLER 351 (397)
Q Consensus 335 ~SATl~~~--~~l~~~l~~ 351 (397)
+|.|-+.. ..++.+|..
T Consensus 386 ISS~Ns~~~sTSFL~nLk~ 404 (738)
T PHA03368 386 VSSTNTGKASTSFLYNLKG 404 (738)
T ss_pred EecCCCCccchHHHHhhcC
Confidence 99997665 556555543
No 224
>PRK05642 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.029 Score=52.13 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=27.4
Q ss_pred CCcceEEEcCCCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 289 DDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.++++||||++|.+... .+...+-.+++.+.. .+ ..++++++.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-------~g-~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRD-------SG-RRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHh-------cC-CEEEEeCCCCHH
Confidence 35678999999976432 234456666655542 23 446666665554
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.049 Score=53.27 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.+.++++.|+||+|||.... .+...+.. .+..++++ +..+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~---------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD---------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH---------CCCeEEEE-EHHHHHHHH
Confidence 45789999999999997433 34444443 34455554 445555544
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.36 E-value=0.013 Score=58.03 Aligned_cols=90 Identities=12% Similarity=0.037 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
++-+.+.||||.|||...+--+...... .+....+||-+-|--.+.. ..++.++.-.++.+..++......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIGA~--EQLk~Ya~im~vp~~vv~~~~el~ 273 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIGAV--EQLKTYADIMGVPLEVVYSPKELA 273 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhhHH--HHHHHHHHHhCCceEEecCHHHHH
Confidence 7789999999999998866444443322 1134566776666554422 345556655566665555444444
Q ss_pred HHHHHhcCCccEEEeChHH
Q 015946 258 ALEDVSNAPIGMLIATPSE 276 (397)
Q Consensus 258 ~~~~~~~~~~~IlV~TP~~ 276 (397)
.....+...-.|+|-|.|+
T Consensus 274 ~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 274 EAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHhhcCCEEEEeCCCC
Confidence 4444444444455555543
No 227
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0097 Score=60.38 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g-----~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|+.-|-.||..+..| +.-.+.|-||||||+..+--| ..+ ..-+||++|.+.||.|.+..|+
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI-~~~------------~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVI-AKV------------QRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHH-HHh------------CCCeEEEecchhHHHHHHHHHH
Confidence 5677788888776543 467888999999998754333 322 3358999999999999999999
Q ss_pred HhhhcCC
Q 015946 238 FISHCAR 244 (397)
Q Consensus 238 ~~~~~~~ 244 (397)
.+.....
T Consensus 79 ~fFP~Na 85 (663)
T COG0556 79 EFFPENA 85 (663)
T ss_pred HhCcCcc
Confidence 9876533
No 228
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.32 E-value=0.032 Score=66.48 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHH---HHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYL---LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~---lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
.+++.|..|+..++.+ +-++|+|..|+|||.... -++.+.+.. .+..++.++||-.-+..+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------cCCeEEEEeChHHHHHHH
Confidence 6899999999998865 457889999999998752 223332222 366888899997776654
No 229
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.30 E-value=0.022 Score=53.76 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
.++++.||+|+|||...-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4799999999999976533
No 230
>PRK06921 hypothetical protein; Provisional
Probab=96.30 E-value=0.12 Score=49.08 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.+.++++.|++|+|||.... .+...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~--------~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK--------KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh--------cCceEEEEE-HHHHHHH
Confidence 36789999999999996432 333444331 144566654 4444444
No 231
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.28 E-value=0.071 Score=57.91 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=18.3
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHH
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNP 317 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~ 317 (397)
..+.+|||||+|.+... ....+..+++.
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 45678999999988653 23344444443
No 232
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.27 E-value=0.083 Score=48.94 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=70.9
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC---chhHHHHHHHHHHHhhhcCCcceeeec-
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT---TEESADQGFHMAKFISHCARLDSSMEN- 251 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P---treLa~Qv~~~~~~~~~~~~~~v~~~~- 251 (397)
..|.-+++.|++|+|||...+--+++.+.. .+..++|++- ..+++..+.. . ..++....+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~---------~g~~vly~s~E~~~~~~~~r~~~---~---~~~~~~~~~~~ 75 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK---------QGKPVLFFSLEMSKEQLLQRLLA---S---ESGISLSKLRT 75 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCceEEEeCCCCHHHHHHHHHH---H---hcCCCHHHHhc
Confidence 356789999999999996544334443332 2557777763 3333332211 1 1122111111
Q ss_pred CCCChHH------HHHHhcCCccEEE-----eChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHH
Q 015946 252 GGVSSKA------LEDVSNAPIGMLI-----ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILN 316 (397)
Q Consensus 252 g~~~~~~------~~~~~~~~~~IlV-----~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~ 316 (397)
+...... ....+.. ..+.| .|++.|...+..... -.++++||||=++.+.... ....+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~ 153 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKE-LPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISR 153 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHH
Confidence 1111100 0111222 23333 245555555543211 1278999999999764332 2345666777
Q ss_pred HhhhhhhccCCCCceEEEEec
Q 015946 317 PLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SA 337 (397)
.|.....+ .++-++++|.
T Consensus 154 ~L~~la~~---~~~~ii~~~q 171 (242)
T cd00984 154 SLKLLAKE---LNVPVIALSQ 171 (242)
T ss_pred HHHHHHHH---hCCeEEEecc
Confidence 77644322 3566777764
No 233
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.087 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQM 202 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~ 202 (397)
.|.-+.++||||+|||.....-+-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35569999999999998876544433
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.13 E-value=0.036 Score=51.50 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+..+++.||+|+|||-...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999996543
No 235
>PRK06904 replicative DNA helicase; Validated
Probab=96.11 E-value=0.17 Score=52.12 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=76.7
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cC-
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NG- 252 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g- 252 (397)
+..|.=+++.|.+|.|||.. ++-++..+... .+..++|++. .--..|+...+-. ...++....+ .|
T Consensus 218 l~~G~LiiIaarPg~GKTaf-alnia~~~a~~--------~g~~Vl~fSl-EMs~~ql~~Rlla--~~s~v~~~~i~~g~ 285 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTF-AMNLCENAAMA--------SEKPVLVFSL-EMPAEQIMMRMLA--SLSRVDQTKIRTGQ 285 (472)
T ss_pred cCCCcEEEEEeCCCCChHHH-HHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHHH--hhCCCCHHHhccCC
Confidence 44555688899999999974 44444443321 2334566543 2333444333222 2223332222 22
Q ss_pred CCChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHH
Q 015946 253 GVSSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNP 317 (397)
Q Consensus 253 ~~~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~ 317 (397)
..+..... ..+...+.+.|. |+..+...+.+.......+++||||-.+.|-..+ ...++..|.+.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~ 365 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRS 365 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHH
Confidence 22222221 122223445553 4555544443211112358999999999775333 34567778777
Q ss_pred hhhhhhccCCCCceEEEEec
Q 015946 318 LKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SA 337 (397)
|+..... -++.+|++|.
T Consensus 366 LK~lAke---l~ipVi~lsQ 382 (472)
T PRK06904 366 LKALAKE---LKVPVVALSQ 382 (472)
T ss_pred HHHHHHH---hCCeEEEEEe
Confidence 7755522 3778888884
No 236
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.09 E-value=0.031 Score=60.02 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+++-|+.|+-. ...+++|.|+.|||||.+.+--+...+.... ..+.++++|+.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~------~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ------AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC------CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4789999998754 3357899999999999986655554444321 134589999999999998887775543
No 237
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.08 E-value=0.11 Score=52.51 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=80.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
|+...++---..+.-+..|.-+++.|++|+|||...+--+...... .+..++|++ ...-..|+...+-.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~---------~g~~v~~fS-lEm~~~~l~~Rl~~- 244 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR---------EGKPVLFFS-LEMSAEQLGERLLA- 244 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCcEEEEE-CCCCHHHHHHHHHH-
Confidence 4433333333333334456678999999999997544333333322 244566665 22223343332221
Q ss_pred hhcCCcceeee-cCCCChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCcccc---
Q 015946 240 SHCARLDSSME-NGGVSSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD--- 304 (397)
Q Consensus 240 ~~~~~~~v~~~-~g~~~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~--- 304 (397)
...++....+ .|........ ..+.. ..+.|. |+..+...+..-......+++||||=++.|..
T Consensus 245 -~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~ 322 (421)
T TIGR03600 245 -SKSGINTGNIRTGRFNDSDFNRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRG 322 (421)
T ss_pred -HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCC
Confidence 1223322222 2222222211 12222 234553 33344443332111223688999999998753
Q ss_pred CCCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 305 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 305 ~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
......+..|.+.|+..... -++.+|++|..
T Consensus 323 ~~~~~~~~~i~~~Lk~lAke---~~i~Vi~lsQl 353 (421)
T TIGR03600 323 RDRNEELGGISRGLKALAKE---LDVPVVLLAQL 353 (421)
T ss_pred CCHHHHHHHHHHHHHHHHHH---hCCcEEEeccc
Confidence 12445666777777655422 36788888864
No 238
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.06 E-value=0.025 Score=59.36 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=93.5
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH-HHHHHh
Q 015946 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~-~~~~~~ 239 (397)
..+|+|.+.+.++... +.|+++.++.+|||.+.+..+...+.. ....++++.||.++|.... ..+.-+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ---------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe---------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5678888888887654 579999999999999655544444433 3457899999999998854 344443
Q ss_pred hhcCC-cceeeecC---C-CChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc--CCCHHHHH
Q 015946 240 SHCAR-LDSSMENG---G-VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD--RGFGPEIS 312 (397)
Q Consensus 240 ~~~~~-~~v~~~~g---~-~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~--~~f~~~l~ 312 (397)
..... ++ ..+.. . ........... +..|.++..+.- ..+.-..+++|++||+|.+-. .+-++-+.
T Consensus 87 i~~sp~l~-~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~ 158 (557)
T PF05876_consen 87 IRASPVLR-RKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVE 158 (557)
T ss_pred HHhCHHHH-HHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHH
Confidence 33221 11 11111 0 00000111112 223333321110 123346689999999999853 23566677
Q ss_pred HHHHHhhhhhhccCCCCceEEEEe-ccCCCChhHHHhhhh
Q 015946 313 KILNPLKDSALKSNGQGFQTILVT-AAIAELSSLMECLER 351 (397)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~S-ATl~~~~~l~~~l~~ 351 (397)
....+..... .+..++..| .|+.....+...+..
T Consensus 159 la~~R~~tf~-----~~~K~~~~STPt~~~~~~I~~~~~~ 193 (557)
T PF05876_consen 159 LAEKRTKTFG-----SNRKILRISTPTIEGTSRIERLYEE 193 (557)
T ss_pred HHHHHHhhhc-----cCcEEEEeCCCCCCCCCHHHHHHHh
Confidence 7777665431 234444444 444434556665554
No 239
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.06 E-value=0.061 Score=58.06 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
|+...+..-.+.+.... .|-..|+.-..|-||||-.+--+...+.... ..-.+||||||..-+. -.++.|.
T Consensus 676 GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k------lg~ktaLvV~PlNt~~-NW~~EFe 748 (1567)
T KOG1015|consen 676 GVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK------LGFKTALVVCPLNTAL-NWMNEFE 748 (1567)
T ss_pred chhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc------cCCceEEEEcchHHHH-HHHHHHH
Confidence 44444444444444433 2445777778999999875433333333322 1355899999976554 3445566
Q ss_pred HhhhcC----CcceeeecCCCChHHHHHHh---cCCccEEEeChHHHHHHHhcC-------------CCCCCCcceEEEc
Q 015946 238 FISHCA----RLDSSMENGGVSSKALEDVS---NAPIGMLIATPSEVLQHIEDR-------------NVSCDDIRYVVLD 297 (397)
Q Consensus 238 ~~~~~~----~~~v~~~~g~~~~~~~~~~~---~~~~~IlV~TP~~L~~~l~~~-------------~~~l~~l~~lVlD 297 (397)
.+.... .+.|..+..-.........+ .+.-.|.|.-...+..+-... .+.-..-++||.|
T Consensus 749 kWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCD 828 (1567)
T KOG1015|consen 749 KWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCD 828 (1567)
T ss_pred HhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEec
Confidence 665432 34444433222222222222 221234443333332222111 1122456899999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 298 Eah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
|+|.+ ..-...+...+..+. .-+.|+++.|.-. ..|+.++.
T Consensus 829 E~HiL--KNeksa~Skam~~ir---------tkRRI~LTGTPLQ-NNLmEY~C 869 (1567)
T KOG1015|consen 829 EGHIL--KNEKSAVSKAMNSIR---------TKRRIILTGTPLQ-NNLMEYHC 869 (1567)
T ss_pred chhhh--ccchHHHHHHHHHHH---------hheeEEeecCchh-hhhHHHHH
Confidence 99976 333555666666554 2345666666322 24444443
No 240
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.04 E-value=0.017 Score=62.06 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.+++-|.+|+.+ .+..++|.|+.|||||.+..--+...+.... ....++|+|+-|+.-|..+...+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478899998865 3467899999999999987666665554311 12447999999999999988877654
No 241
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.04 E-value=0.046 Score=58.37 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g-----~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|+-.|..+|..+..| +..++.|-||||||+..+- ++.. .+..+|||+|+..+|.|.+..++
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~------------~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQ------------VNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHH------------hCCCEEEEECCHHHHHHHHHHHH
Confidence 6888999999887543 2667999999999987553 2222 13358999999999999999998
Q ss_pred Hhhh
Q 015946 238 FISH 241 (397)
Q Consensus 238 ~~~~ 241 (397)
.+..
T Consensus 76 ~f~p 79 (655)
T TIGR00631 76 EFFP 79 (655)
T ss_pred HhCC
Confidence 8864
No 242
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.03 E-value=0.025 Score=64.82 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc-
Q 015946 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC- 242 (397)
Q Consensus 164 ~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~- 242 (397)
.|+-|..+|. ..|++++|.|..|||||.+..--++..+... ..--++++|+=|+.-+..+...+......
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5889999997 4688999999999999999877777766542 12246999999999998877766543221
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCc--ceEEEcCCCc
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI--RYVVLDEADT 301 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l--~~lVlDEah~ 301 (397)
..- ........+.+..-...-|+|-..++..+-+.....-+| .+=|.||...
T Consensus 73 ~~~-------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQQ-------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hhc-------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 110 001111112222223567899988876654433222222 4556888764
No 243
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.02 E-value=0.24 Score=52.23 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCcceEEEcCCCccccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 289 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
.++++||||++|.+.... ....+-.+++.+.. .+.++|+.|-..+
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e-------~gk~IIITSd~~P 421 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHN-------ANKQIVLSSDRPP 421 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHh-------cCCCEEEecCCCh
Confidence 457899999999875433 23445555555542 3457776554443
No 244
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.02 E-value=0.26 Score=46.76 Aligned_cols=132 Identities=8% Similarity=0.160 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC-ch--hHHHHHHHHHHHhhhcCCcceeeecCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TE--ESADQGFHMAKFISHCARLDSSMENGG 253 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P-tr--eLa~Qv~~~~~~~~~~~~~~v~~~~g~ 253 (397)
.+..++++|++|+|||..+.+-+... .. .+..+.++.- +. ..+.|. ..+....++.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~---------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~------ 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG---------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEV------ 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH---------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceE------
Confidence 44689999999999999776544432 22 2334444432 22 233332 22222222221
Q ss_pred CChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEE
Q 015946 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 333 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i 333 (397)
+...+|..+.+.+..- -...+.++++||-+-++.. -...+..+...+... .+..-++
T Consensus 134 ---------------~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~-----~~~~~~L 190 (270)
T PRK06731 134 ---------------IAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYR--ASETVEEMIETMGQV-----EPDYICL 190 (270)
T ss_pred ---------------EecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhh-----CCCeEEE
Confidence 1123566665554321 1124578999998876521 133444444433211 1333467
Q ss_pred EEeccCCCC--hhHHHhhhh
Q 015946 334 LVTAAIAEL--SSLMECLER 351 (397)
Q Consensus 334 ~~SATl~~~--~~l~~~l~~ 351 (397)
++|||.... .+.++.|..
T Consensus 191 Vl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 191 TLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred EEcCccCHHHHHHHHHHhCC
Confidence 799987654 566666654
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.05 Score=55.57 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
..+++.|++|+|||-.. -.+...+.... .+.+++|+.. .++...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-------~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-------SDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-------CCCeEEEEEH-HHHHHHHHH
Confidence 35999999999999432 33344443311 2445665544 555555443
No 246
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.00 E-value=0.077 Score=54.25 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
..+++.||+|+|||..... +...+.... .+..++++ +..++..+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~-------~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKN-------PNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhC-------CCCeEEEE-EHHHHHHH
Confidence 4599999999999975433 333333310 13455555 44455444
No 247
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.00 E-value=0.045 Score=54.88 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=79.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh-HHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE-SADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre-La~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
-.++.|+.|||||.+.++-++..+.... .+.+++++-++.. |-.-++..+.......++....-....+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 3688999999999999888888777631 3568899989987 54556666665544444432111111110
Q ss_pred HHHHhcCCccEEEeCh-HHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 259 LEDVSNAPIGMLIATP-SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP-~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
.......+..|++..- +...+ +. ....+.++.+|||..+- ...+..++.+++. . ...+.+++|.
T Consensus 74 ~i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~----~--~~~~~i~~t~ 138 (396)
T TIGR01547 74 EIKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLT----FEDIKELIPRLRE----T--GGKKFIIFSS 138 (396)
T ss_pred EEEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcC----HHHHHHHHHHhhc----c--CCccEEEEEc
Confidence 0001111344555443 22111 11 12336899999999872 3466667766542 1 1222477777
Q ss_pred cCCCC
Q 015946 338 AIAEL 342 (397)
Q Consensus 338 Tl~~~ 342 (397)
+....
T Consensus 139 NP~~~ 143 (396)
T TIGR01547 139 NPESP 143 (396)
T ss_pred CcCCC
Confidence 76654
No 248
>PF13173 AAA_14: AAA domain
Probab=95.97 E-value=0.062 Score=44.78 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=27.6
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
.-.+|+|||+|.+ .++...+..+...- ++.++++.+....
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~---------~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG---------PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc---------cCceEEEEccchH
Confidence 5678999999987 45666666666633 3567777665444
No 249
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.93 E-value=0.043 Score=60.36 Aligned_cols=136 Identities=19% Similarity=0.152 Sum_probs=84.0
Q ss_pred CCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 161 LFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~-----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
...+.++|...+..+. .+.+.++....|-|||+..+.-+...+... ....+.++|+||+--+. +..+.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~------~~~~~~~liv~p~s~~~-nw~~e 408 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI------KVYLGPALIVVPASLLS-NWKRE 408 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc------cCCCCCeEEEecHHHHH-HHHHH
Confidence 3467788888876644 366788889999999987555444422221 11146789999976544 44455
Q ss_pred HHHhhhcCCcceeeecCCCC-----hHHHHHHhcCC----ccEEEeChHHHHHHH-hcCCCCCCCcceEEEcCCCcccc
Q 015946 236 AKFISHCARLDSSMENGGVS-----SKALEDVSNAP----IGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 236 ~~~~~~~~~~~v~~~~g~~~-----~~~~~~~~~~~----~~IlV~TP~~L~~~l-~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
+..+...... +..++|... ........... .+++++|-+.+.... ....+.-....++|+||+|.+-+
T Consensus 409 ~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 409 FEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred HhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 5555443332 666677654 22222222222 689999998887642 11233445678999999998643
No 250
>PRK12377 putative replication protein; Provisional
Probab=95.92 E-value=0.24 Score=46.46 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~ 233 (397)
..++++.|++|+|||-.. ..+...+.. .+..++ .++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~---------~g~~v~-~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLA---------KGRSVI-VVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH---------cCCCeE-EEEHHHHHHHHH
Confidence 368999999999999643 233334433 233444 445556666543
No 251
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.13 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~ 201 (397)
.++-++++||+|+|||....--+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999876554443
No 252
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.031 Score=53.49 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~ 201 (397)
++.++++||||+|||....--+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999876544433
No 253
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.82 E-value=0.14 Score=48.16 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCC-C
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-S 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~-~ 255 (397)
.|.=+++.|++|.|||...+--+.+.... .+..++|++.--. ..++...+-. ...++....+..+. .
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~---------~~~~vly~SlEm~-~~~l~~R~la--~~s~v~~~~i~~g~l~ 85 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN---------GGYPVLYFSLEMS-EEELAARLLA--RLSGVPYNKIRSGDLS 85 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT---------TSSEEEEEESSS--HHHHHHHHHH--HHHTSTHHHHHCCGCH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh---------cCCeEEEEcCCCC-HHHHHHHHHH--HhhcchhhhhhccccC
Confidence 34568999999999997655444444443 2467777764211 1222222211 11233322222222 2
Q ss_pred hHHHH------HHhcCCccEEEeCh----HHHHHHHhcCCCCCCCcceEEEcCCCccccC----CCHHHHHHHHHHhhhh
Q 015946 256 SKALE------DVSNAPIGMLIATP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLKDS 321 (397)
Q Consensus 256 ~~~~~------~~~~~~~~IlV~TP----~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~l~~~ 321 (397)
..... ..+....-.+..+| +.+...+..-......+++||||=+|.|-.. +....+..+...|+..
T Consensus 86 ~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~l 165 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKAL 165 (259)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 22111 12223222333443 4555555432222377899999999987653 3567788887777765
Q ss_pred hhccCCCCceEEEEecc
Q 015946 322 ALKSNGQGFQTILVTAA 338 (397)
Q Consensus 322 ~~~~~~~~~q~i~~SAT 338 (397)
... .++.+|++|..
T Consensus 166 A~~---~~i~vi~~sQl 179 (259)
T PF03796_consen 166 AKE---LNIPVIALSQL 179 (259)
T ss_dssp HHH---HTSEEEEEEEB
T ss_pred HHH---cCCeEEEcccc
Confidence 533 26788888764
No 254
>PRK05973 replicative DNA helicase; Provisional
Probab=95.81 E-value=0.093 Score=48.82 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHH---------HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 146 LGLKAEMIKAVEKMGLFVPSEIQCV---------GIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 146 l~l~~~l~~~l~~~g~~~~~~iQ~~---------ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
+.+++.+=+.-.+-||..-+-.... ...-+..|.-++|.|++|+|||...+--+...+. .+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----------~G 92 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----------SG 92 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----------cC
Confidence 4445555555555566533222222 2233446677999999999999865544444433 24
Q ss_pred CceEEEcCchhHHHHHHHHHHHh
Q 015946 217 PRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
..++|++- .+-..|+.+.+..+
T Consensus 93 e~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 93 RTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CeEEEEEE-eCCHHHHHHHHHHc
Confidence 56777743 33346666666554
No 255
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.80 E-value=0.03 Score=61.99 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=96.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccc--------cCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCccee
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEA--------LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS 248 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~--------~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~ 248 (397)
.|++++..-..|.|||.+-+...+........ .........-+|||||.- +..|.+..+..-... ++++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~-~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS-LLKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc-cceEE
Confidence 35678888889999999977666654321100 111122345789999964 445666665554333 35776
Q ss_pred eecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--------------CCC----CCCcc--eEEEcCCCccccCCCH
Q 015946 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------------NVS----CDDIR--YVVLDEADTLFDRGFG 308 (397)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--------------~~~----l~~l~--~lVlDEah~~l~~~f~ 308 (397)
.+.|-...........-.+||||+|...|..-+... ..+ |-.+. .|+||||. |+.. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQ-Mves-ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQ-MVES-SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHH-hhcc-hH
Confidence 666633221111111224899999999886555321 011 11122 38999999 5544 46
Q ss_pred HHHHHHHHHhhhhhhccCCCCceEEEEecc----CCCChhHHHhhhhcc
Q 015946 309 PEISKILNPLKDSALKSNGQGFQTILVTAA----IAELSSLMECLERDN 353 (397)
Q Consensus 309 ~~l~~il~~l~~~~~~~~~~~~q~i~~SAT----l~~~~~l~~~l~~~~ 353 (397)
.+....+.+|+ ..-..++|.| +.+--.++.+|...|
T Consensus 529 S~~a~M~~rL~---------~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 529 SAAAEMVRRLH---------AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred HHHHHHHHHhh---------hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 66666677775 3458889999 555555666665555
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.76 E-value=0.089 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..++++|++|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3457999999999999653
No 257
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.18 Score=49.17 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 161 LFVPSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~----~g~---dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
+..++|||..+|..+. .|+ -+++.||.|+||+..... +...+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 4578999999998765 444 489999999999875433 3344443
No 258
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.71 E-value=0.13 Score=52.06 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=42.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC--chhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT--TEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P--treLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
-++++|++|+|||....--+.. +.. .+.++++++- .|.-+. ..++.++...++.+.....+....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~---------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~ 168 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR---------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPV 168 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH---------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHH
Confidence 4789999999999765433332 322 2445555543 243332 233444444455554434333321
Q ss_pred H----HHH-HhcCCcc-EEEeChHHH
Q 015946 258 A----LED-VSNAPIG-MLIATPSEV 277 (397)
Q Consensus 258 ~----~~~-~~~~~~~-IlV~TP~~L 277 (397)
. ... ....+++ |+|-||||+
T Consensus 169 ~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 169 KIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 1 111 1122344 566688876
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.1 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil 200 (397)
.|+.++++||||+|||.....-+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999987654443
No 260
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.63 E-value=0.12 Score=52.17 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
..+++.|++|+|||... -.+...+.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 35899999999999754 33444443
No 261
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.62 E-value=0.064 Score=49.88 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=37.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.|..+++.|++|+|||...+--+...+. .+..++|++ +.+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4678999999999999865544554443 355788887 5566667766666554
No 262
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.16 Score=49.62 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCcHHHHHHHHHHhC-CC---cEEEEcCCCCchHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN-GK---SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~-g~---dvlv~apTGsGKTl~~~l 197 (397)
.++|||...|..+.. |+ -.|++||.|.|||.....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 357999999988774 33 489999999999976443
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.61 E-value=0.18 Score=51.53 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+++.|++|+|||...+--+.... . .+.+++|++- .+-..|+...+..++....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~---------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~------------ 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-A---------AGGKVLYVSG-EESASQIKLRAERLGLPSD------------ 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-h---------cCCeEEEEEc-cccHHHHHHHHHHcCCChh------------
Confidence 456789999999999976444333322 2 2557888874 4555666555555432110
Q ss_pred HHHHHHhcCCccEEEeC---hHHHHHHHhcCCCCCCCcceEEEcCCCccccC------CCHHHHHHHHHHhhhhhhccCC
Q 015946 257 KALEDVSNAPIGMLIAT---PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR------GFGPEISKILNPLKDSALKSNG 327 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~T---P~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~------~f~~~l~~il~~l~~~~~~~~~ 327 (397)
.+.+.. .+.+...+.. .+.++||||+++.+... +...+++.++..|.....+
T Consensus 136 -----------~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~--- 196 (446)
T PRK11823 136 -----------NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ--- 196 (446)
T ss_pred -----------cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH---
Confidence 022222 2333444332 35789999999977542 2334555555544433211
Q ss_pred CCceEEEEec
Q 015946 328 QGFQTILVTA 337 (397)
Q Consensus 328 ~~~q~i~~SA 337 (397)
.++.+++++-
T Consensus 197 ~~itvilv~h 206 (446)
T PRK11823 197 RGIAVFLVGH 206 (446)
T ss_pred cCCEEEEEee
Confidence 3566666653
No 264
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.59 E-value=0.12 Score=50.26 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
++++.||+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999976533
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.21 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQM 202 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~ 202 (397)
.-++++||+|+|||....--+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999998766555443
No 266
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.55 E-value=0.1 Score=52.12 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999864
No 267
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.14 Score=52.14 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
..+++.||+|+|||-... .+...+.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHH
Confidence 369999999999996543 3333443
No 268
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.54 E-value=0.21 Score=41.00 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=13.2
Q ss_pred EEEEcCCCCchHHHH
Q 015946 181 VVLSSGSGSGRTLAY 195 (397)
Q Consensus 181 vlv~apTGsGKTl~~ 195 (397)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 689999999999754
No 269
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.54 E-value=0.13 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
..+++.|++|+|||-... .+...+.. .+..++++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~---------~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE---------SGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH---------cCCCEEEee
Confidence 459999999999996533 34444433 245666664
No 270
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.50 E-value=0.034 Score=60.24 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+++-|.+++.+ .+..++|.|+.|||||.+..--+...+.... -...++|+|+-|+..|..+...+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999998865 3468999999999999986555554443211 134589999999999999888776654
No 271
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.49 E-value=0.042 Score=59.05 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 164 ~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+++-|.+++.+ .+.+++|.|+.|||||.+.+--+...+.... .....+++|+.|+.-+.++.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 67889998765 3568999999999999987766666654311 13457899999999999988877654
No 272
>PRK08840 replicative DNA helicase; Provisional
Probab=95.46 E-value=0.32 Score=49.91 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
|+.+.++---..+.-+..|.=+++.|.+|.|||... +-+...+... .+..++|.+.- --..|+...+-.
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafa-lnia~~~a~~--------~~~~v~~fSlE-Ms~~ql~~Rlla- 267 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFA-MNLCENAAMD--------QDKPVLIFSLE-MPAEQLMMRMLA- 267 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHH-HHHHHHHHHh--------CCCeEEEEecc-CCHHHHHHHHHH-
Confidence 444444333343333445566888999999999754 3333333221 23345555422 223343332211
Q ss_pred hhcCCcceeee-cCCCChHHHHH------HhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-
Q 015946 240 SHCARLDSSME-NGGVSSKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG- 306 (397)
Q Consensus 240 ~~~~~~~v~~~-~g~~~~~~~~~------~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~- 306 (397)
...++....+ .|..+...... .+.....+.|. |+..+...+.+-......+++||||-.+.|-..+
T Consensus 268 -~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~ 346 (464)
T PRK08840 268 -SLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL 346 (464)
T ss_pred -hhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC
Confidence 2223322212 22223222221 22122345543 3334433332211112358999999999874222
Q ss_pred ---CHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 307 ---FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 307 ---f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
....+..|.+.|+..... -++.+|++|.
T Consensus 347 ~~~r~~ei~~isr~LK~lAke---l~ipVi~LsQ 377 (464)
T PRK08840 347 SDNRTLEIAEISRSLKALAKE---LNVPVVALSQ 377 (464)
T ss_pred CCchHHHHHHHHHHHHHHHHH---hCCeEEEEEe
Confidence 345677787777765422 3678888884
No 273
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.44 E-value=0.056 Score=52.63 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=44.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 152 MIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 152 l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
.+..|.+.|+ +++.|...+.. +..+++++++|+||||||.. +-.++..+... ....++++|-.+.||.
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-------CCCceEEEEcCCCccc
Confidence 3455666676 45677777764 55778999999999999954 44455443211 1244677777777763
No 274
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.16 Score=45.48 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCc-ceeeecCCCCh
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL-DSSMENGGVSS 256 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~-~v~~~~g~~~~ 256 (397)
|+=.+++||..||||...+--+-.... .+.++++..|-..-= + +. .+....|- .
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~----------~g~~v~vfkp~iD~R---------~----~~~~V~Sr~G~-~- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE----------AGMKVLVFKPAIDTR---------Y----GVGKVSSRIGL-S- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH----------cCCeEEEEecccccc---------c----ccceeeeccCC-c-
Confidence 344689999999999853332222211 466788777743210 0 11 12222221 1
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHH
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 317 (397)
-.-++|-.+..+.+.+........ +++|.||||+-+ +...-.++..+...
T Consensus 59 ---------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 59 ---------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred ---------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 134677788888888876444333 889999999954 33334444444443
No 275
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.077 Score=52.70 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=20.4
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
....-+||+||+|.|++..- ..+..|++..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34566899999999987654 4555555443
No 276
>PRK07004 replicative DNA helicase; Provisional
Probab=95.37 E-value=0.2 Score=51.32 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=74.7
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCC
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGG 253 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~ 253 (397)
+..|.=+++.|.+|+|||...+--+...... .+..++|++ ...-..|+...+- +...++....+ .|.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~---------~~~~v~~fS-lEM~~~ql~~R~l--a~~~~v~~~~i~~g~ 277 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE---------YGLPVAVFS-MEMPGTQLAMRML--GSVGRLDQHRMRTGR 277 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH---------cCCeEEEEe-CCCCHHHHHHHHH--HhhcCCCHHHHhcCC
Confidence 3345668889999999997543333332222 233455553 2222333332221 11222222212 233
Q ss_pred CChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHh
Q 015946 254 VSSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPL 318 (397)
Q Consensus 254 ~~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l 318 (397)
.+..+.. ..+.. ..+.|. |+..+...+.+-......+++||||=.+.|...+ ....+..|.+.|
T Consensus 278 l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~L 356 (460)
T PRK07004 278 LTDEDWPKLTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSL 356 (460)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHH
Confidence 3322221 12323 345553 3444444333211122458999999999875322 445678888888
Q ss_pred hhhhhccCCCCceEEEEecc
Q 015946 319 KDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SAT 338 (397)
+..... -++.+|++|.-
T Consensus 357 K~lAke---l~ipVi~lsQL 373 (460)
T PRK07004 357 KSLAKE---LDVPVIALSQL 373 (460)
T ss_pred HHHHHH---hCCeEEEEecc
Confidence 765522 36788888853
No 277
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.055 Score=55.28 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
.+|++||.|+|||.+..+-+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999998765543
No 278
>PRK05748 replicative DNA helicase; Provisional
Probab=95.35 E-value=0.35 Score=49.40 Aligned_cols=147 Identities=13% Similarity=0.143 Sum_probs=73.7
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCC
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGV 254 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~ 254 (397)
..|.-++|.|++|+|||...+ -++..+... .+..++|++ ...-..|+...+-. ...++....+ .|..
T Consensus 201 ~~G~livIaarpg~GKT~~al-~ia~~~a~~--------~g~~v~~fS-lEms~~~l~~R~l~--~~~~v~~~~i~~~~l 268 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFAL-NIAQNVATK--------TDKNVAIFS-LEMGAESLVMRMLC--AEGNIDAQRLRTGQL 268 (448)
T ss_pred CCCceEEEEeCCCCCchHHHH-HHHHHHHHh--------CCCeEEEEe-CCCCHHHHHHHHHH--HhcCCCHHHhhcCCC
Confidence 345668999999999996544 444333221 233455553 33334444443321 1112222211 2222
Q ss_pred ChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-----CHHHHHHHHHHh
Q 015946 255 SSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----FGPEISKILNPL 318 (397)
Q Consensus 255 ~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-----f~~~l~~il~~l 318 (397)
...... ..+.+ ..+.|. |+..+...+.+-.....++++||||=.+.|-..+ ....+..|.+.|
T Consensus 269 ~~~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~L 347 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSL 347 (448)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHH
Confidence 222211 12222 334443 3444544433211111368999999999774222 234567777777
Q ss_pred hhhhhccCCCCceEEEEecc
Q 015946 319 KDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SAT 338 (397)
+..... -++.+|++|..
T Consensus 348 K~lAke---~~i~vi~lsQl 364 (448)
T PRK05748 348 KALAKE---LKVPVIALSQL 364 (448)
T ss_pred HHHHHH---hCCeEEEeccc
Confidence 654422 36788888875
No 279
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.34 E-value=0.16 Score=49.03 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=25.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCC--cEEE-EcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK--SVVL-SSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~--dvlv-~apTGsGKTl~~ 195 (397)
..+|+++-.++.+.+.+... +..|+ ++++ .||+|+|||...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 17 PSTIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 35677776676666555421 12332 4444 899999999753
No 280
>PRK08006 replicative DNA helicase; Provisional
Probab=95.34 E-value=0.4 Score=49.30 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=75.0
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCC
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGG 253 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~ 253 (397)
+..|.=+++.|.+|.|||...+ -+...+... .+..++|.+.- --..|+...+-. ...++....+ .|.
T Consensus 221 l~~G~LiiIaarPgmGKTafal-nia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla--~~~~v~~~~i~~~~ 288 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAM-NLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLA--SLSRVDQTRIRTGQ 288 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHH--HhcCCCHHHhhcCC
Confidence 3345568889999999996543 333333211 23345555422 223333332221 1123322222 233
Q ss_pred CChHHHHH------HhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccC----CCHHHHHHHHHHh
Q 015946 254 VSSKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPL 318 (397)
Q Consensus 254 ~~~~~~~~------~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~l 318 (397)
.+.....+ .+.....+.|. |+..+...+.+-......+++||||=.+.|-.. .....+..|.+.|
T Consensus 289 l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 368 (471)
T PRK08006 289 LDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSL 368 (471)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHH
Confidence 33332221 12122345553 444454444321111236899999999977422 2455688888888
Q ss_pred hhhhhccCCCCceEEEEec
Q 015946 319 KDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SA 337 (397)
+..... -++.+|++|.
T Consensus 369 K~lAke---l~ipVi~LsQ 384 (471)
T PRK08006 369 KALAKE---LQVPVVALSQ 384 (471)
T ss_pred HHHHHH---hCCeEEEEEe
Confidence 765522 3788898884
No 281
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.32 E-value=0.12 Score=55.26 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLN----G-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~----g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|+..|..+|..+.. | +..++.|.+||||++.++- ++.. .+..+|||+|+..+|.|++..+.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~------------~~r~vLIVt~~~~~A~~l~~dL~ 78 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR------------LQRPTLVLAHNKTLAAQLYSEFK 78 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH------------hCCCEEEEECCHHHHHHHHHHHH
Confidence 799999999988753 3 2577999999999987542 2221 13469999999999999999998
Q ss_pred Hhhh
Q 015946 238 FISH 241 (397)
Q Consensus 238 ~~~~ 241 (397)
.+..
T Consensus 79 ~~~~ 82 (652)
T PRK05298 79 EFFP 82 (652)
T ss_pred HhcC
Confidence 8754
No 282
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.25 E-value=0.15 Score=52.37 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHhC------C----CcEEEEcCCCCchHHHHH-HHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 163 VPSEIQCVGIPAVLN------G----KSVVLSSGSGSGRTLAYL-LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~------g----~dvlv~apTGsGKTl~~~-lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.+-|||.-++-.++. | +..+|..|-+-|||...+ |.....+... ..+-...|++|+.+-+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 678999999988872 2 247888899999997655 4444444332 256688999999999999
Q ss_pred HHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc--CCCCCCCcceEEEcCCCccccCCCHH
Q 015946 232 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDRGFGP 309 (397)
Q Consensus 232 v~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~--~~~~l~~l~~lVlDEah~~l~~~f~~ 309 (397)
.+..++....... ..........+...|...--...+..+.. +..+=.+..+.|+||.|...+. +.
T Consensus 134 ~F~~ar~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~--~~ 201 (546)
T COG4626 134 SFNPARDMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ--ED 201 (546)
T ss_pred hhHHHHHHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH--HH
Confidence 8888777644322 00000000011111222222222222222 2334455679999999976332 24
Q ss_pred HHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 310 EISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 310 ~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
.+..+..-+.. .++.+++..|-
T Consensus 202 ~~~~~~~g~~a------r~~~l~~~ITT 223 (546)
T COG4626 202 MYSEAKGGLGA------RPEGLVVYITT 223 (546)
T ss_pred HHHHHHhhhcc------CcCceEEEEec
Confidence 45555544432 25788888886
No 283
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.23 E-value=0.051 Score=58.93 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+++-|.+++.+. ...++|.|+.|||||.+..--+...+.... -...++|+|+-|+..|..+.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999988653 468999999999999886555554443211 124579999999999999888776654
No 284
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.20 E-value=0.33 Score=49.36 Aligned_cols=146 Identities=18% Similarity=0.134 Sum_probs=72.5
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCC
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGV 254 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~ 254 (397)
..|.-+++.|++|+|||...+--+...... .+..++|++. ..-..|+...+-... .++....+ .|..
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~---------~g~~vl~~Sl-Em~~~~i~~R~~~~~--~~v~~~~~~~g~l 260 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIK---------EGKPVAFFSL-EMSAEQLAMRMLSSE--SRVDSQKLRTGKL 260 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh---------CCCeEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHhccCCC
Confidence 345568999999999996543333333322 2445666542 233344433332222 22222111 2222
Q ss_pred ChHHH------HHHhcCCccEEE-e----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhh
Q 015946 255 SSKAL------EDVSNAPIGMLI-A----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLK 319 (397)
Q Consensus 255 ~~~~~------~~~~~~~~~IlV-~----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~ 319 (397)
..... ...+.+ ..+.| . |+..+...+..-... ..+++||||=++.|...+ ....+..|.+.|+
T Consensus 261 ~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk 338 (434)
T TIGR00665 261 SDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLK 338 (434)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 22211 112223 23444 2 444554444321111 348899999998774322 3345677777776
Q ss_pred hhhhccCCCCceEEEEecc
Q 015946 320 DSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 320 ~~~~~~~~~~~q~i~~SAT 338 (397)
..... -++.+|++|..
T Consensus 339 ~lA~e---~~i~vi~lsql 354 (434)
T TIGR00665 339 ALAKE---LNVPVIALSQL 354 (434)
T ss_pred HHHHH---hCCeEEEEecc
Confidence 54322 36788888853
No 285
>PRK04195 replication factor C large subunit; Provisional
Probab=95.18 E-value=0.17 Score=52.15 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~---g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++-.++..++.|... +..... .+.+++.||+|+|||...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34566666666666555432 000112 467999999999999764
No 286
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=95.16 E-value=0.047 Score=59.16 Aligned_cols=128 Identities=14% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHHh---CC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL---NG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~---~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+.++|...+..+. +| -|-|+.-.+|-|||..- |.++.++.... ...||+ +||+|+-.|.+=. ..|..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K-----~~~GP~-LvivPlstL~NW~-~Ef~k 465 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHK-----QMQGPF-LIIVPLSTLVNWS-SEFPK 465 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHc-----ccCCCe-EEeccccccCCch-hhccc
Confidence 67788888876543 33 37788889999999764 44444444432 224554 6678998887543 22333
Q ss_pred hhhcCCcceeeecCCCChHH--HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 239 ISHCARLDSSMENGGVSSKA--LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
+.. .+..+.+.|...... +........+||++|.+-+.. ....+.--+..|+||||-|+|
T Consensus 466 WaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRm 527 (1157)
T KOG0386|consen 466 WAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRM 527 (1157)
T ss_pred ccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccc
Confidence 322 333333333222111 122334568999999776543 111122233568999999998
No 287
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.16 E-value=0.2 Score=52.01 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=63.0
Q ss_pred ccCCCCHHHH-HHHHHCCCCCCcH----HHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 144 QELGLKAEMI-KAVEKMGLFVPSE----IQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 144 ~~l~l~~~l~-~~l~~~g~~~~~~----iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
.+.++.++++ ..|.+.-=.++.. +|.+-=..|. .++-++|+|..|||||.+.+--+...+...+... .+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l----~~ 260 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL----QA 260 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc----cc
Confidence 3445665554 5676653334433 4554444444 3456999999999999988766666665543221 13
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
..+||+.|.+-+..-+.+++-.++..
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhccC
Confidence 34999999999999999988888654
No 288
>CHL00181 cbbX CbbX; Provisional
Probab=95.15 E-value=0.26 Score=47.34 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
|.++++.||+|+|||...-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 55799999999999987544
No 289
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.10 E-value=0.09 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999764 3344444
No 290
>PRK08506 replicative DNA helicase; Provisional
Probab=95.08 E-value=0.4 Score=49.35 Aligned_cols=146 Identities=15% Similarity=0.125 Sum_probs=74.5
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCC
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGV 254 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~ 254 (397)
..|.-+++.|++|.|||...+--+.+ +.. .+..++|++. ..-..|+...+-. ...++....+ .|..
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~-~~~---------~g~~V~~fSl-EMs~~ql~~Rlla--~~s~v~~~~i~~~~l 256 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALK-ALN---------QDKGVAFFSL-EMPAEQLMLRMLS--AKTSIPLQNLRTGDL 256 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHH-HHh---------cCCcEEEEeC-cCCHHHHHHHHHH--HhcCCCHHHHhcCCC
Confidence 34556889999999999754443333 322 2445666542 2334444433322 1223322222 2222
Q ss_pred ChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhh
Q 015946 255 SSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLK 319 (397)
Q Consensus 255 ~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~ 319 (397)
+..... ..+.+. .+.|. |+..+...+++-......+++||||=.+.|-..+ ....+..|.+.|+
T Consensus 257 ~~~e~~~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK 335 (472)
T PRK08506 257 DDDEWERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLK 335 (472)
T ss_pred CHHHHHHHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHH
Confidence 222221 122232 34443 4445544443311122468999999999775322 3456777777776
Q ss_pred hhhhccCCCCceEEEEecc
Q 015946 320 DSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 320 ~~~~~~~~~~~q~i~~SAT 338 (397)
..... -++.+|++|..
T Consensus 336 ~lAke---l~ipVi~lsQL 351 (472)
T PRK08506 336 LLARE---LDIPIIALSQL 351 (472)
T ss_pred HHHHH---hCCcEEEEeec
Confidence 54422 36788888853
No 291
>PRK06321 replicative DNA helicase; Provisional
Probab=95.03 E-value=0.42 Score=49.12 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCCCh
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVSS 256 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~~~ 256 (397)
|.=+++.|.+|.|||... +-+...+... .+..++|.+ ...-..|+...+-. ...++....+ .|..+.
T Consensus 226 G~LiiiaarPgmGKTafa-l~ia~~~a~~--------~g~~v~~fS-LEMs~~ql~~Rlla--~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 226 SNLMILAARPAMGKTALA-LNIAENFCFQ--------NRLPVGIFS-LEMTVDQLIHRIIC--SRSEVESKKISVGDLSG 293 (472)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHHh--------cCCeEEEEe-ccCCHHHHHHHHHH--hhcCCCHHHhhcCCCCH
Confidence 445788999999999754 4444444321 233455553 22223343333221 2223332222 233332
Q ss_pred HHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-------CHHHHHHHHHHh
Q 015946 257 KALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-------FGPEISKILNPL 318 (397)
Q Consensus 257 ~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-------f~~~l~~il~~l 318 (397)
.... ..+.. ..+.|- |...+...+..-.. -..+++||||=++.|...+ ....+..|.+.|
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 2222 22223 345554 34445444433111 2458899999999875322 235677777777
Q ss_pred hhhhhccCCCCceEEEEecc
Q 015946 319 KDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SAT 338 (397)
+..... -++.+|++|..
T Consensus 372 K~lAke---l~vpVi~lsQL 388 (472)
T PRK06321 372 KNLARE---LNIPILCLSQL 388 (472)
T ss_pred HHHHHH---hCCcEEEEeec
Confidence 754422 36788888864
No 292
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.00 E-value=0.38 Score=50.70 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=80.0
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 164 PSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+-.+|...+..+. .|-|-|+.-..|-|||.-. |.++.++..... --|| -|||+|.-.|-+=. ..+..|
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~n-----IwGP-FLVVtpaStL~NWa-qEisrF 639 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHN-----IWGP-FLVVTPASTLHNWA-QEISRF 639 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhcc-----CCCc-eEEeehHHHHhHHH-HHHHHh
Confidence 4456777666543 6778999999999999864 556666655421 1244 46777866654322 223333
Q ss_pred hhcCCcceeeecCCCChHHHHHH---------hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 240 SHCARLDSSMENGGVSSKALEDV---------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~~---------~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
. ..+++.-++|+.......+. ...+.||+|++...+..-- ..+.--..+|.|+|||..+=.
T Consensus 640 l--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe--ky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 640 L--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE--KYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred C--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--HHHHhhhhhheehhHHHHhhh
Confidence 2 25788889998876655443 2346799999876542211 111122357999999998743
No 293
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.46 Score=48.96 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
....+++||||+|.|. ...+..+++.+.
T Consensus 114 ~~~~KVvIIDEah~Ls----~~A~NaLLK~LE 141 (491)
T PRK14964 114 SSKFKVYIIDEVHMLS----NSAFNALLKTLE 141 (491)
T ss_pred cCCceEEEEeChHhCC----HHHHHHHHHHHh
Confidence 3578899999999774 345556666665
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.93 E-value=0.49 Score=43.81 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=32.9
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
-.|.-+++.|++|+|||...+--+.. +.. .+..+++++ +.+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~---------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ---------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh---------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 35778999999999999764333333 222 355778887 444445554544443
No 295
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.92 E-value=0.18 Score=50.89 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++++.||+|+|||....
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997654
No 296
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.91 E-value=0.32 Score=43.20 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+++.|++|+|||...+--+...+............+.+++|+..-.. ..++.+.+..+.... ..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-----------~~ 98 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-----------DD 98 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS------------H
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-----------CC
Confidence 566799999999999986544444444322111101124557777765444 556666666554322 11
Q ss_pred HHHHHHhc--CCccEEEeCh-------HHHHHHHhcCCCCCCCcceEEEcCCCccccCC--CHHHHHHHHHHhhhhhhcc
Q 015946 257 KALEDVSN--APIGMLIATP-------SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKS 325 (397)
Q Consensus 257 ~~~~~~~~--~~~~IlV~TP-------~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~l~~~~~~~ 325 (397)
........ +.-.+-+.++ ...++.+........++++||||-+..+...+ ....+..++..+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 178 (193)
T PF13481_consen 99 DANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEY 178 (193)
T ss_dssp HHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11111110 0001111111 11122222211122458999999999887643 3454566666666544222
Q ss_pred CCCCceEEEEe
Q 015946 326 NGQGFQTILVT 336 (397)
Q Consensus 326 ~~~~~q~i~~S 336 (397)
++-++++.
T Consensus 179 ---~~~vi~v~ 186 (193)
T PF13481_consen 179 ---GVAVILVH 186 (193)
T ss_dssp -----EEEEEE
T ss_pred ---CCEEEEEE
Confidence 34555543
No 297
>PRK09183 transposase/IS protein; Provisional
Probab=94.88 E-value=0.4 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.7
Q ss_pred HhCCCcEEEEcCCCCchHHHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~l 197 (397)
+..|.++++.||+|+|||.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHH
Confidence 45688999999999999965443
No 298
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.88 E-value=0.28 Score=48.89 Aligned_cols=118 Identities=16% Similarity=0.264 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+++.|++|+|||...+--+.. +.. .+..++|+.-. +-..|+......++ +..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~-~a~---------~g~~VlYvs~E-Es~~qi~~Ra~rlg----~~~--------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR-LAK---------RGGKVLYVSGE-ESPEQIKLRADRLG----IST--------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHh---------cCCeEEEEECC-cCHHHHHHHHHHcC----CCc---------
Confidence 4567999999999999865443333 222 24578887654 34456554444432 110
Q ss_pred HHHHHHhcCCccEEEe---ChHHHHHHHhcCCCCCCCcceEEEcCCCccccC------CCHHHHHHHHHHhhhhhhccCC
Q 015946 257 KALEDVSNAPIGMLIA---TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR------GFGPEISKILNPLKDSALKSNG 327 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~---TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~------~f~~~l~~il~~l~~~~~~~~~ 327 (397)
-.+.+. ..+.+.+.+.. .+.++||||+++.+... |...+++.++..|.+....
T Consensus 137 ----------~~l~l~~e~~le~I~~~i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~--- 198 (372)
T cd01121 137 ----------ENLYLLAETNLEDILASIEE-----LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE--- 198 (372)
T ss_pred ----------ccEEEEccCcHHHHHHHHHh-----cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH---
Confidence 011121 22444444432 35789999999987532 2345666666555443321
Q ss_pred CCceEEEEe
Q 015946 328 QGFQTILVT 336 (397)
Q Consensus 328 ~~~q~i~~S 336 (397)
.++-+++++
T Consensus 199 ~~itvilvg 207 (372)
T cd01121 199 RNIPIFIVG 207 (372)
T ss_pred cCCeEEEEe
Confidence 245566554
No 299
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.77 E-value=0.2 Score=47.09 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~-dvlv~apTGsGKTl~~~ 196 (397)
.+++.+..++..+. .+. .+++.|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666666543 333 68999999999997654
No 300
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.76 E-value=0.52 Score=43.28 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.|..+++.|++|+|||...+--+...+. .+..+++++- .+...++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~----------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR----------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 4678999999999998765433333332 2445666653 34445554444443
No 301
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.73 E-value=0.26 Score=51.38 Aligned_cols=142 Identities=12% Similarity=0.166 Sum_probs=90.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
+-.+.--|--.|||+ |++|++..++.. -.+..+.|++.-+--++-++..+..-.. -+++.....
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-------~~gI~IGYvAHqKhvs~~Vf~EI~~~lr-------rwF~~~~vi- 266 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-------IIGISIGYVAHQKHVSQFVLKEVEFRCR-------RMFPRKHTI- 266 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-------hcCceEEEEeeHHHHHHHHHHHHHHHHh-------hhcCcccee-
Confidence 456778899999997 578888877763 2688999999988877776665432111 111111110
Q ss_pred HHHHhcCCccEEEeChHHHH-----HHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEE
Q 015946 259 LEDVSNAPIGMLIATPSEVL-----QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 333 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~-----~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i 333 (397)
-.++-.|.+.-||.=- .-...+.+.=++..+++|||||-+ -.+.+..|+..+.. .++.+|
T Consensus 267 ----~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q-------~~~KiI 331 (668)
T PHA03372 267 ----ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQ-------NTTKII 331 (668)
T ss_pred ----eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcc-------cCceEE
Confidence 0011235555554321 111223455577899999999966 47788899998874 688999
Q ss_pred EEeccCCCC--hhHHHhhhh
Q 015946 334 LVTAAIAEL--SSLMECLER 351 (397)
Q Consensus 334 ~~SATl~~~--~~l~~~l~~ 351 (397)
.+|.|=+.. ..++..|..
T Consensus 332 fISS~Nsg~~sTSfL~~Lk~ 351 (668)
T PHA03372 332 FISSTNTTNDATCFLTKLNN 351 (668)
T ss_pred EEeCCCCCCccchHHHhccC
Confidence 999886544 556655543
No 302
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.28 Score=48.64 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred ceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 292 ~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.+|+|||+|++- .. +=..++-.+. +-.++++.||-.|+
T Consensus 106 tiLflDEIHRfn-K~---QQD~lLp~vE---------~G~iilIGATTENP 143 (436)
T COG2256 106 TILFLDEIHRFN-KA---QQDALLPHVE---------NGTIILIGATTENP 143 (436)
T ss_pred eEEEEehhhhcC-hh---hhhhhhhhhc---------CCeEEEEeccCCCC
Confidence 468999999873 22 2233444442 56799999997777
No 303
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.68 E-value=0.33 Score=46.45 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+.++++.||+|||||.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 304
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.68 E-value=0.38 Score=45.80 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~ 201 (397)
.+-++++|++|+|||....--+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346888899999999876554433
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.59 E-value=0.28 Score=49.86 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpi 199 (397)
..++++|++|+|||.+..--+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 358999999999998765444
No 306
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.56 E-value=0.22 Score=45.64 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.|..+++.|++|+|||...+--+...+.. .+-.++|++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 45689999999999997655555555543 034677776 344455665655554
No 307
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.55 Score=46.16 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHhC--CC---cEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 164 PSEIQCVGIPAVLN--GK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 164 ~~~iQ~~ai~~i~~--g~---dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
++|||...|..+.. |+ -+++.||.|.||+..... +...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 47889999887663 33 588999999999976533 3344443
No 308
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.51 E-value=0.1 Score=56.74 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+++-|.+++.+. ...++|.|+.|||||.+..--+...+.... -..-++|+|+-|+.-|..+...+..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 45889999998753 468999999999999987666665554321 123479999999998888877776553
No 309
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.49 E-value=0.42 Score=46.71 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHh--CCC---cEEEEcCCCCchHHHHHH
Q 015946 164 PSEIQCVGIPAVL--NGK---SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 164 ~~~iQ~~ai~~i~--~g~---dvlv~apTGsGKTl~~~l 197 (397)
.+|||...|..+. .|+ -+|+.||.|.|||.....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 3688999998877 333 589999999999976544
No 310
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.45 E-value=0.37 Score=46.68 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
++.+++.|++|+|||....
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999997644
No 311
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.44 E-value=0.35 Score=47.16 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=47.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH-HH---HHHHhhhcCCcceeee--cCCCC
Q 015946 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-FH---MAKFISHCARLDSSME--NGGVS 255 (397)
Q Consensus 182 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv-~~---~~~~~~~~~~~~v~~~--~g~~~ 255 (397)
|+.++.|+|||.+.++.++..+.... ....++++ +|..-+... .. .+..+... .+.+..- ....-
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-------PGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE
Confidence 57789999999999888888877631 12344444 666655442 22 22222222 1111111 01000
Q ss_pred hHHHHHHhcCCccEEEeChHH--HHHHHhcCCCCCCCcceEEEcCCCccc
Q 015946 256 SKALEDVSNAPIGMLIATPSE--VLQHIEDRNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~TP~~--L~~~l~~~~~~l~~l~~lVlDEah~~l 303 (397)
.+.++..|.+.+-.. -..-+.. ..+.++++||+-.+-
T Consensus 72 ------~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~ 110 (384)
T PF03237_consen 72 ------ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVP 110 (384)
T ss_dssp ------EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGST
T ss_pred ------EecCceEEEEeccccccccccccc-----cccceeeeeecccCc
Confidence 113555566666332 1122221 557799999998764
No 312
>PRK08760 replicative DNA helicase; Provisional
Probab=94.39 E-value=0.77 Score=47.33 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~~ 255 (397)
.|.=++|.|++|.|||...+--+...... .+..++|.+. ..-..|+...+-... .++....+ .|...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~---------~g~~V~~fSl-EMs~~ql~~Rl~a~~--s~i~~~~i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK---------SKKGVAVFSM-EMSASQLAMRLISSN--GRINAQRLRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh---------cCCceEEEec-cCCHHHHHHHHHHhh--CCCcHHHHhcCCCC
Confidence 45568889999999997544333333222 2345665542 222344444333222 12222212 22222
Q ss_pred hHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015946 256 SKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (397)
Q Consensus 256 ~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~~ 320 (397)
..+.. ..+.. ..+.|. |++.+...+..-.. -..+++||||=++.|-..+ ....+..|.+.|+.
T Consensus 296 ~~e~~~~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~ 373 (476)
T PRK08760 296 DEDWARVTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKG 373 (476)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHH
Confidence 22211 12222 344444 34455444432111 1358999999999774222 44567778777775
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.... -++.+|++|..
T Consensus 374 lAke---l~ipVi~lsQL 388 (476)
T PRK08760 374 LAKE---LNVPVIALSQL 388 (476)
T ss_pred HHHH---hCCEEEEeecc
Confidence 5522 36788888843
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.38 E-value=1.2 Score=43.42 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpi 199 (397)
+.-++++||+|+|||....--+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4568899999999998754433
No 314
>PRK05595 replicative DNA helicase; Provisional
Probab=94.35 E-value=0.28 Score=50.13 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeec-CCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN-GGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~-g~~~ 255 (397)
.|.-+++.|+||.|||...+--+...... .+..++|++. ..-..|+...+-. ...++....+. |...
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~---------~g~~vl~fSl-Ems~~~l~~R~~a--~~~~v~~~~~~~~~l~ 267 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALR---------EGKSVAIFSL-EMSKEQLAYKLLC--SEANVDMLRLRTGNLE 267 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHH---------cCCcEEEEec-CCCHHHHHHHHHH--HhcCCCHHHHhcCCCC
Confidence 34557889999999997544333322222 2445666643 2223343333222 12233222222 2222
Q ss_pred hHHHHH------HhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015946 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (397)
Q Consensus 256 ~~~~~~------~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~~ 320 (397)
...... .+.. ..+.|- |+..+...+...... ..+++||||=++.|...+ ....+..|.+.|+.
T Consensus 268 ~~e~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~ 345 (444)
T PRK05595 268 DKDWENIARASGPLAA-AKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKA 345 (444)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 222111 1111 234443 333443333332111 358999999999885332 23567777777765
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.... -++.++++|..
T Consensus 346 lAke---~~i~vi~lsQL 360 (444)
T PRK05595 346 LAKE---MECPVIALSQL 360 (444)
T ss_pred HHHH---hCCeEEEeecc
Confidence 5422 36788888754
No 315
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.4 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.4
Q ss_pred CCc-EEEEcCCCCchHHHHHH
Q 015946 178 GKS-VVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~d-vlv~apTGsGKTl~~~l 197 (397)
+.+ +|+.||.|+|||.+...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~ 43 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA 43 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH
Confidence 456 99999999999987544
No 316
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.31 E-value=0.25 Score=53.94 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=53.0
Q ss_pred ccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 267 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 267 ~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..|+++||..|..-+-.+.+++..|..|||||||++....-...+..+.+.-+ +..=+.+|||.....
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n--------~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN--------KTGFIKAFSDNPEAF 75 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC--------CCcceEEecCCCccc
Confidence 47999999999888888899999999999999999975544444444443322 566799999997764
No 317
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=1 Score=44.73 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
....+++||||+|.|- ......+++.+.
T Consensus 139 ~~~~kVviIDead~m~----~~aanaLLK~LE 166 (365)
T PRK07471 139 EGGWRVVIVDTADEMN----ANAANALLKVLE 166 (365)
T ss_pred cCCCEEEEEechHhcC----HHHHHHHHHHHh
Confidence 4567899999999883 344555555554
No 318
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.24 E-value=0.78 Score=47.32 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh---
Q 015946 187 SGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS--- 263 (397)
Q Consensus 187 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~--- 263 (397)
.++|++..-++.+.+.+... -.|.+||.+-+.+-|.|++..+. .+-++++.+++|..+..+....+
T Consensus 366 vF~gse~~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHH
Confidence 46788887778777777653 57889999999999999888776 44588999999997766654433
Q ss_pred -cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 264 -NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 264 -~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
.....++||| +++.++ ++|.++.+||-++.-
T Consensus 435 R~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 435 RIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred hccCeeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 2457899999 566665 889999999997654
No 319
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.24 E-value=0.18 Score=49.17 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=42.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 154 KAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 154 ~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
..+...|. +++.|...|.. +..++++|++|+||||||... -.++..+.... ..-+++++=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~-------~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA-------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC-------CCceEEEecCCcccc
Confidence 34445665 56677777665 456779999999999999753 33444443211 234667776677764
No 320
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.21 E-value=2.5 Score=38.87 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.|.-+++.|++|+|||....--+...+. .+..++|+.-- +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~----------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK----------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh----------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 3567999999999999765444444332 25567777643 3334555555554
No 321
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.19 E-value=0.16 Score=46.84 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
++++.||.|+|||.+.+.-+
T Consensus 50 ~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred ceEeeCCCCCchhhHHHHHH
Confidence 89999999999999865433
No 322
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.12 E-value=0.5 Score=43.13 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+.+.|++|+|||...+.-+...+.... ..+....++|+.....+-. ..+..+....+.. .
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~----~~g~~~~v~yi~~e~~~~~---~rl~~~~~~~~~~---------~ 81 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGE----LGGLEGKVVYIDTEGAFRP---ERLVQLAVRFGLD---------P 81 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccc----cCCCcceEEEEecCCCCCH---HHHHHHHHHhccc---------h
Confidence 3567999999999999865544443332210 0112356777776433211 1122221111111 0
Q ss_pred HHHHHHhcCCccE-EEeChHHHHHHHhcC--CCCCCCcceEEEcCCCccccCCC---------HHHHHHHHHHhhhhhhc
Q 015946 257 KALEDVSNAPIGM-LIATPSEVLQHIEDR--NVSCDDIRYVVLDEADTLFDRGF---------GPEISKILNPLKDSALK 324 (397)
Q Consensus 257 ~~~~~~~~~~~~I-lV~TP~~L~~~l~~~--~~~l~~l~~lVlDEah~~l~~~f---------~~~l~~il~~l~~~~~~ 324 (397)
...+.+ ..+ -+.+++.+...+..- ...-..+++||||-+-.+....+ ...+..++..|...+.+
T Consensus 82 ---~~~~~~-i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~ 157 (226)
T cd01393 82 ---EEVLDN-IYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADK 157 (226)
T ss_pred ---hhhhcc-EEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 111 123555555554431 12235789999999876542211 12345555555543321
Q ss_pred cCCCCceEEEEecc
Q 015946 325 SNGQGFQTILVTAA 338 (397)
Q Consensus 325 ~~~~~~q~i~~SAT 338 (397)
.++-+|+.+-+
T Consensus 158 ---~~~~vi~tnq~ 168 (226)
T cd01393 158 ---FNVAVVFTNQV 168 (226)
T ss_pred ---hCcEEEEEEEE
Confidence 35667766644
No 323
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.81 Score=48.58 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...+++||||+|.|. ...+..+++.+.
T Consensus 123 g~~KV~IIDEvh~Ls----~~a~NaLLKtLE 149 (618)
T PRK14951 123 GRFKVFMIDEVHMLT----NTAFNAMLKTLE 149 (618)
T ss_pred CCceEEEEEChhhCC----HHHHHHHHHhcc
Confidence 567899999999874 344555666554
No 324
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=0.76 Score=47.66 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
.+|++||.|+|||.+..+-+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999998765533
No 325
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.04 E-value=0.67 Score=49.39 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...+++||||+|.|. ......+++.+.
T Consensus 118 g~~KV~IIDEah~Ls----~~a~NALLKtLE 144 (647)
T PRK07994 118 GRFKVYLIDEVHMLS----RHSFNALLKTLE 144 (647)
T ss_pred CCCEEEEEechHhCC----HHHHHHHHHHHH
Confidence 467899999999874 345556666664
No 326
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.38 Score=51.02 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
....+++||||+|.|.. ...+.+++.|.. -+.++.+|++|-
T Consensus 122 ~gr~KViIIDEah~Ls~----~AaNALLKTLEE-----PP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN----HAFNAMLKTLEE-----PPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCH----HHHHHHHHhhcc-----CCCCceEEEEeC
Confidence 35678999999998743 344556665542 124566666653
No 327
>PRK05636 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.62 Score=48.34 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCcceEEEcCCCccccCC----CHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 289 DDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
..+++||||=++.|-... ....+..|.+.|+..... -++.+|++|.
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke---l~ipVi~lsQ 423 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKE---LDVPLIAISQ 423 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHH---hCCeEEEEee
Confidence 358999999999875322 234677787777765522 3678888884
No 328
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.51 Score=50.81 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
-+|++|+.|+|||.+..+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986544
No 329
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.99 E-value=0.66 Score=45.01 Aligned_cols=135 Identities=15% Similarity=0.180 Sum_probs=65.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC-c-hhHHHHHHHHHHHhhhcCCcceeee-cCCCCh
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-T-EESADQGFHMAKFISHCARLDSSME-NGGVSS 256 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P-t-reLa~Qv~~~~~~~~~~~~~~v~~~-~g~~~~ 256 (397)
-++++|-.|+|||.+..--+.... . .+.++++.+- | |+=|. +.+..++...|+.+... .|+.+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~-~---------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpA 207 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK-Q---------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPA 207 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH-H---------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcH
Confidence 488999999999998654333322 2 2445554442 2 44443 23455556567666552 233222
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEE
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILV 335 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~ 335 (397)
.-- .+.++.. .-+++++|++|=|-+|-.. ..-..+..|.+.+.... ...+..++++
T Consensus 208 aVa------------------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~---~~ap~e~llv 264 (340)
T COG0552 208 AVA------------------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD---PDAPHEILLV 264 (340)
T ss_pred HHH------------------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc---CCCCceEEEE
Confidence 111 1111110 1133445555555554332 24455566665554322 2234444444
Q ss_pred -eccCCCC-hhHHHhhh
Q 015946 336 -TAAIAEL-SSLMECLE 350 (397)
Q Consensus 336 -SATl~~~-~~l~~~l~ 350 (397)
=||.+++ ..-++.|.
T Consensus 265 lDAttGqnal~QAk~F~ 281 (340)
T COG0552 265 LDATTGQNALSQAKIFN 281 (340)
T ss_pred EEcccChhHHHHHHHHH
Confidence 7887776 44444443
No 330
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.96 E-value=0.58 Score=45.47 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 275 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 275 ~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
..|+..+..+...-+.--++|+||+|..........+..++....... .++-++++|.-++-
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r-----~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSAR-----APICIIGVTTRLDI 183 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcC-----CCeEEEEeeccccH
Confidence 455666665544444446789999998766666666666776655322 56778888776653
No 331
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.35 Score=51.66 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.3
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
.+|++||.|+|||.+..+-+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999998765533
No 332
>PLN03025 replication factor C subunit; Provisional
Probab=93.95 E-value=0.59 Score=45.46 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
.++++.||.|+|||.....
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999976433
No 333
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.94 E-value=0.021 Score=48.11 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
+|++.||+|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999753
No 334
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.93 E-value=0.97 Score=50.33 Aligned_cols=80 Identities=14% Similarity=0.249 Sum_probs=62.8
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
++.+++|+||+++-+..++..++.+. .++++..++|+.+.......+ .+..+|||||- +-..++++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhccccccc
Confidence 46789999999998888888777653 367899999998876655432 45689999994 2334788999
Q ss_pred cceEEEcCCCcc
Q 015946 291 IRYVVLDEADTL 302 (397)
Q Consensus 291 l~~lVlDEah~~ 302 (397)
+++||++.++++
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
No 335
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.92 E-value=0.09 Score=55.07 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhc
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRD 206 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~ 206 (397)
+|+.||...+..+. .|+=-|+.+|||+|||++.+=.++.++...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 78999998877654 689899999999999999887787777543
No 336
>PHA00729 NTP-binding motif containing protein
Probab=93.92 E-value=0.66 Score=42.77 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
++++.|++|+|||...
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999643
No 337
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.91 E-value=0.27 Score=47.44 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 151 EMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 151 ~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
.-+..|.+.|. +++-|...+.. +..+++++++|+||||||... -.++..+... ....+++++-.+.|+.
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~-------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN-------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc-------CCCceEEEECCchhhc
Confidence 33555556665 44555565554 556779999999999999753 3344444321 0134677777777763
No 338
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=0.23 Score=52.71 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
-+|++||.|+|||.+..+-+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46999999999998765433
No 339
>PF05729 NACHT: NACHT domain
Probab=93.83 E-value=0.46 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=17.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
=++|.|+.|+|||.... -++..+..
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHh
Confidence 37899999999998653 34444443
No 340
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.37 Score=52.82 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchHHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLV 200 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil 200 (397)
-+|++||.|+|||.+..+-+-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 379999999999988765443
No 341
>PRK04328 hypothetical protein; Provisional
Probab=93.71 E-value=0.65 Score=43.51 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.|..+++.|++|+|||...+--+...+. .+..++|++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4668999999999998754444444443 355677776 5555666666666654
No 342
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.65 E-value=0.48 Score=41.31 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
...+++|||+||.|. ......+++.|... +.++.+|++|....
T Consensus 101 ~~~KviiI~~ad~l~----~~a~NaLLK~LEep-----p~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT----EEAQNALLKTLEEP-----PENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-----HHHHHHHHHHHHST-----TTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhh----HHHHHHHHHHhcCC-----CCCEEEEEEECChH
Confidence 578999999999884 44455555555421 24666777765544
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.64 E-value=0.28 Score=52.80 Aligned_cols=137 Identities=13% Similarity=0.171 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
++=++++||.|+|||....-... ... .+..+..+. .-+--++.++.+..+....+-- ..+....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~--~~~---------~~~~v~Wls-lde~dndp~rF~~yLi~al~~~----~p~~~~~ 100 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE--LAA---------DGAAVAWLS-LDESDNDPARFLSYLIAALQQA----TPTLGDE 100 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH--hcC---------cccceeEee-cCCccCCHHHHHHHHHHHHHHh----CccccHH
Confidence 35699999999999986543332 111 233344332 2233344555555544322211 1111111
Q ss_pred HHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 258 ~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
.+ ....+ +.-+ .-..+++.+....-...+--++|+|+.|.+-+......++.+++..+ ++...|+.|=
T Consensus 101 a~-~l~q~--~~~~-~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P--------~~l~lvv~SR 168 (894)
T COG2909 101 AQ-TLLQK--HQYV-SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP--------ENLTLVVTSR 168 (894)
T ss_pred HH-HHHHh--cccc-cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC--------CCeEEEEEec
Confidence 11 11111 1111 11222333322222334456999999999977777888888888877 6888998887
Q ss_pred cCCCC
Q 015946 338 AIAEL 342 (397)
Q Consensus 338 Tl~~~ 342 (397)
+-|.-
T Consensus 169 ~rP~l 173 (894)
T COG2909 169 SRPQL 173 (894)
T ss_pred cCCCC
Confidence 76654
No 344
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.60 E-value=0.12 Score=50.23 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 160 GLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.|...++-|...+..+..++ |+|++|.||||||.. +-++.... ...-++|.+=-|.||.-+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i---------~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI---------DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC---------CCcccEEEEeehhhhccC
Confidence 46678889999988777665 999999999999974 22221111 123388888888887655
No 345
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.68 Score=45.96 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
.+++.||.|+|||.....
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 369999999999986544
No 346
>PRK10867 signal recognition particle protein; Provisional
Probab=93.56 E-value=0.86 Score=46.30 Aligned_cols=86 Identities=8% Similarity=0.126 Sum_probs=43.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc-C-chhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-T-TEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~-P-treLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
-++++|++|+|||.+..--+...... .+.++++++ - .|.-+. ..++.++...++.+.....+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~---------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~dp~ 169 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK---------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQDPV 169 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCCHH
Confidence 48899999999998765444433221 134454444 2 233332 223344444565544332222222
Q ss_pred HHH-----HHhcCCcc-EEEeChHHH
Q 015946 258 ALE-----DVSNAPIG-MLIATPSEV 277 (397)
Q Consensus 258 ~~~-----~~~~~~~~-IlV~TP~~L 277 (397)
... .....+++ |||-|||++
T Consensus 170 ~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 170 DIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 211 11223454 777899987
No 347
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.37 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...+++||||||.|. ......+++.+.
T Consensus 118 gk~KViIIDEAh~LT----~eAqNALLKtLE 144 (944)
T PRK14949 118 GRFKVYLIDEVHMLS----RSSFNALLKTLE 144 (944)
T ss_pred CCcEEEEEechHhcC----HHHHHHHHHHHh
Confidence 467899999999873 445555555554
No 348
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.50 E-value=0.42 Score=51.71 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=25.5
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.-.+|||||+|.+. ..+...++..+. +.++++++||-.+.
T Consensus 109 ~~~IL~IDEIh~Ln----~~qQdaLL~~lE---------~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFN----KAQQDALLPWVE---------NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCC----HHHHHHHHHHhc---------CceEEEEEecCCCh
Confidence 45689999999873 222233444332 45788888886665
No 349
>PTZ00293 thymidine kinase; Provisional
Probab=93.48 E-value=0.91 Score=41.43 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
|+=.++.||.+||||.-.+- .+..... .+..++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~---------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY---------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH---------cCCceEEEEecc
Confidence 45568899999999964433 3333332 356778877754
No 350
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.78 Score=47.11 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHhC----C----CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCC
Q 015946 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIP----AVLN----G----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (397)
Q Consensus 146 l~l~~~l~~~l~~~g~~~~~~iQ~~ai~----~i~~----g----~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 213 (397)
||++++-++.+...|+-...+.=...+. .+.. . ..+|+.||.|||||...+--++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 6888888888877776544443332222 1111 1 26999999999999654433321
Q ss_pred CCCCceEEEcCc
Q 015946 214 PMHPRAIVLCTT 225 (397)
Q Consensus 214 ~~~~~~lvl~Pt 225 (397)
..-|.+=|++|.
T Consensus 562 S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 SDFPFVKIISPE 573 (744)
T ss_pred cCCCeEEEeChH
Confidence 146777777763
No 351
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.86 Score=47.58 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=34.5
Q ss_pred ccccccccCCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHH
Q 015946 138 EVVSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~ 194 (397)
....+|+++|=-...+..|.++ .+.+|-.++.-.+ .--+.+|++||.|+|||..
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHH
Confidence 3355899998555555444432 2555555554332 2236899999999999974
No 352
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.45 E-value=0.93 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
.|.-+.+.|++|+|||...+-.+..... .+..++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~----------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR----------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEECC
Confidence 4567999999999999876544443332 24567777654
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.43 E-value=1.3 Score=42.52 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++++.|+.|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999997653
No 354
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.42 E-value=0.9 Score=48.14 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=29.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCC---cEEEEcCCCCchHHHHHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK---SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~---dvlv~apTGsGKTl~~~lpi 199 (397)
..+|+++--.+.+++.|.. .+..|+ .+|++||.|+|||.+..+-+
T Consensus 20 P~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CCCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3467776556666655543 222343 59999999999998765544
No 355
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.42 E-value=0.27 Score=45.21 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++|+.||.|+|||....
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 69999999999997543
No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.37 E-value=0.68 Score=52.71 Aligned_cols=93 Identities=13% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
++.+++|+|++++-+..++..+..... ++++.+++|+.+.......+ .+..+|||||- .+ ..++++.+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~ 879 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPT 879 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hccccccc
Confidence 356899999999988888877776532 56888999998877655443 35689999993 22 34788999
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+++||++.+|++ +. +++..+..+..
T Consensus 880 v~~VIi~~ad~f---gl-aq~~Qr~GRvG 904 (1147)
T PRK10689 880 ANTIIIERADHF---GL-AQLHQLRGRVG 904 (1147)
T ss_pred CCEEEEecCCCC---CH-HHHHHHhhccC
Confidence 999999999864 32 34444444443
No 357
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.36 E-value=0.5 Score=47.93 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=43.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc-Cc-hhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~-Pt-reLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
-++++|++|+|||....--+...... .+.+++++. -+ |.-+. ..+..++...++.+.....+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~---------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~ 168 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK---------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPV 168 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHH
Confidence 48899999999998765544442212 233444443 32 33222 223334444455544333222221
Q ss_pred HH----H-HHhcCCcc-EEEeChHHH
Q 015946 258 AL----E-DVSNAPIG-MLIATPSEV 277 (397)
Q Consensus 258 ~~----~-~~~~~~~~-IlV~TP~~L 277 (397)
.. . .....+++ |+|-|||++
T Consensus 169 ~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 169 EIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11 1 12234554 778899976
No 358
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=1 Score=47.49 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=15.8
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 015946 181 VVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpi 199 (397)
+|++||.|+|||.+..+-+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998765544
No 359
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.38 Score=49.47 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
.+|++||.|+|||....+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999987554
No 360
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.27 E-value=1.4 Score=42.99 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHH
Q 015946 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~g~---dvlv~apTGsGKTl~~~l 197 (397)
.+|||...|..+. .|+ -.++.||.|.||+.....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 4678888877655 444 578999999999976433
No 361
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.23 E-value=0.36 Score=51.64 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~ 259 (397)
-.|+.--.|-|||..-+..++..=..... ..........|||||+--+ .|-...+........+.+.+++| ... .
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~g-r~k--d 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHG-RTK--D 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcc-hhhccccCceeEecchHHH-HHHHHHHhccCCccceEEEEecc-ccc--c
Confidence 46777788999998755444432221110 0011245578888886544 44445555555655677777777 111 1
Q ss_pred HHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC
Q 015946 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 260 ~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~ 305 (397)
......++||++|++.+.. ..+..-..-.+|+||||.+-+.
T Consensus 229 -~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 229 -KSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred -cchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCc
Confidence 1223457899999988753 1111122346999999988544
No 362
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.45 Score=49.43 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 369999999999987554
No 363
>PF14516 AAA_35: AAA-like domain
Probab=93.12 E-value=1.3 Score=43.48 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh------HHHHHH-HHHH
Q 015946 166 EIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE------SADQGF-HMAK 237 (397)
Q Consensus 166 ~iQ~~ai~~i~~-g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre------La~Qv~-~~~~ 237 (397)
++...++..+.+ |.-+.|.||-.+|||.. +.-+++.+.. .+.++++|-=... -..+.. ..+.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~---------~~~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ---------QGYRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH---------CCCEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 488899999887 99999999999999975 4455555554 2455555432110 011111 1223
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCC-CHHHHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRG-FGPEISKIL 315 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~-f~~~l~~il 315 (397)
.+....++.. .... .+. -.++.+.++...+....+ ....-=+|+|||+|.+++.. +..++-..+
T Consensus 88 ~i~~~L~l~~-------~l~~---~w~----~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~L 153 (331)
T PF14516_consen 88 EISRQLKLDE-------KLDE---YWD----EEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLL 153 (331)
T ss_pred HHHHHcCCCh-------hHHH---HHH----HhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHH
Confidence 3333333321 1111 111 123455555555443211 11233389999999998743 445555555
Q ss_pred HHhhh
Q 015946 316 NPLKD 320 (397)
Q Consensus 316 ~~l~~ 320 (397)
+.+..
T Consensus 154 R~~~~ 158 (331)
T PF14516_consen 154 RSWYE 158 (331)
T ss_pred HHHHH
Confidence 55543
No 364
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.12 E-value=0.73 Score=51.44 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=114.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHh--ccc----------
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR--DEA---------- 208 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~--~~~---------- 208 (397)
-.|.++||- |++-=+.+|+. |++.|..+...-|||--+.|--=+||-..+.=+..+.- .+.
T Consensus 712 v~FkdLGLl--IIDEEqRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V 784 (1139)
T COG1197 712 VKFKDLGLL--IIDEEQRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFV 784 (1139)
T ss_pred cEEecCCeE--EEechhhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEE
Confidence 356666652 33333566774 89999999999999999999999998765443322210 000
Q ss_pred -----------cCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeC
Q 015946 209 -----------LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIAT 273 (397)
Q Consensus 209 -----------~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~T 273 (397)
....-.|+.++.||.|..+-..++...++.+.. ..++++.||.+...+..+. +.+..||||||
T Consensus 785 ~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 785 SEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred ecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 000122688999999999999999999988765 4568889999988776654 45679999999
Q ss_pred hHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 274 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 274 P~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
- +-..++++.+...+||+-||+|. ..++..+-.++.+
T Consensus 863 T------IIEtGIDIPnANTiIIe~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 863 T------IIETGIDIPNANTIIIERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred e------eeecCcCCCCCceEEEecccccc----HHHHHHhccccCC
Confidence 4 33457889999999999999873 5566666666553
No 365
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.12 E-value=0.039 Score=50.16 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchHHH
Q 015946 178 GKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~ 194 (397)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46799999999999974
No 366
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.04 E-value=0.22 Score=51.49 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHH
Q 015946 178 GKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~ 194 (397)
.+.+|+.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999985
No 367
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.03 E-value=0.9 Score=47.17 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+...++|||||+|.|. ...+..+++.+.
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LE 141 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLE 141 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHH
Confidence 4667899999999773 345666666665
No 368
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.97 E-value=0.26 Score=46.42 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
.+.++++.|++|+|||.....-.. .+.. .+ ..++.+++.+|+.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~-~l~~---------~g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN-ELLK---------AG-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH-HHHH---------cC-CeEEEEEHHHHHHHHHHH
Confidence 678999999999999976544333 3333 24 445566888888876554
No 369
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.90 E-value=1.5 Score=44.99 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+++.|++|+|||...+--+.. +.. .+..++|+..- +-..|+...+..++.. ..-..+..
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~-~a~---------~g~kvlYvs~E-Es~~qi~~ra~rlg~~--~~~l~~~~---- 155 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ-LAK---------NQMKVLYVSGE-ESLQQIKMRAIRLGLP--EPNLYVLS---- 155 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HHh---------cCCcEEEEECc-CCHHHHHHHHHHcCCC--hHHeEEcC----
Confidence 4667999999999999865543333 322 24468888753 4455655544443211 00000000
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC------CCHHHHHHHHHHhhhhhhccCCCCc
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR------GFGPEISKILNPLKDSALKSNGQGF 330 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~------~f~~~l~~il~~l~~~~~~~~~~~~ 330 (397)
-.+.+.+...+.. .+.++||||.+..+... |...+++.++..|.+...+ .++
T Consensus 156 --------------e~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~---~gi 213 (454)
T TIGR00416 156 --------------ETNWEQICANIEE-----ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT---RGI 213 (454)
T ss_pred --------------CCCHHHHHHHHHh-----cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH---hCC
Confidence 0234555555543 34679999999876432 2334565555544433211 244
Q ss_pred eEEEEec
Q 015946 331 QTILVTA 337 (397)
Q Consensus 331 q~i~~SA 337 (397)
-+++.+-
T Consensus 214 Tvllt~h 220 (454)
T TIGR00416 214 AIFIVGH 220 (454)
T ss_pred EEEEEec
Confidence 5555543
No 370
>PRK09165 replicative DNA helicase; Provisional
Probab=92.84 E-value=1.1 Score=46.32 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhcccc-----CCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL-----LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME- 250 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-----~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~- 250 (397)
.|.-+++.|++|+|||...+--+.+........ ......+..++|++ ...-..|+...+-.. ..++....+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~--~s~v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSE--QSEISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHH--hcCCCHHHHh
Confidence 345588999999999975443333333221000 00001244566663 333334544433222 223322212
Q ss_pred cCCCChHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC------CHHHHHH
Q 015946 251 NGGVSSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG------FGPEISK 313 (397)
Q Consensus 251 ~g~~~~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~------f~~~l~~ 313 (397)
.|........ ..+.. ..+.|. |+..+...+.+-.. -..+++||||=++.|...+ ...++..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~-~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~ 370 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK-LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISE 370 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHH
Confidence 2222222211 11222 335543 34455444433111 1358999999999775322 2346777
Q ss_pred HHHHhhhhhhccCCCCceEEEEec
Q 015946 314 ILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
|.+.|+..... -++.+|++|.
T Consensus 371 is~~LK~lAke---l~ipVi~lsQ 391 (497)
T PRK09165 371 ITQGLKALAKE---LNIPVIALSQ 391 (497)
T ss_pred HHHHHHHHHHH---hCCeEEEeec
Confidence 77777655422 3678888875
No 371
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.83 E-value=0.17 Score=49.83 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=31.1
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 173 ~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
-++..+++++++|+||||||... -.++..+. ...+++.+=.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMS-KTLISAIP----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHH-HHHHcccC----------CCCCEEEECCCcccc
Confidence 44567889999999999999753 22333322 234677777777764
No 372
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.82 E-value=0.29 Score=43.48 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=27.5
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
-.++++++.|++|+|||..... +...+.. .+..++++ ...+|+..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~---------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIR---------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHH---------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhcc---------CCcceeEe-ecCceeccc
Confidence 4678999999999999976443 3333433 24455554 556666554
No 373
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.80 E-value=1.2 Score=41.88 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=25.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
.|.-++|.|++|+|||...+--+.+.+. .+..++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------CCCcEEEEE
Confidence 4667999999999999754443443332 355778777
No 374
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=1.1 Score=47.52 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.3
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+..-+++||||+|.|. ......+++.+.
T Consensus 125 ~~~~KVvIIdEad~Lt----~~a~naLLK~LE 152 (620)
T PRK14954 125 KGRYRVYIIDEVHMLS----TAAFNAFLKTLE 152 (620)
T ss_pred cCCCEEEEEeChhhcC----HHHHHHHHHHHh
Confidence 4667899999999884 344556666665
No 375
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.25 Score=54.59 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=36.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLF-VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~-~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
....|+++|....++.-|+++-+. -++|-+..- -.+..-+.++.++|.|||||+..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~-~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN-FNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhh-cccCCCcceeecCCCCCchhHHH
Confidence 355799999888888888887332 122211110 01223467999999999999864
No 376
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.63 E-value=3.1 Score=41.14 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHhCCC---cEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 174 AVLNGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 174 ~i~~g~---dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
.+.+|+ -+|+.||.|+|||.... -+...+..
T Consensus 38 a~~~grl~ha~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 38 AYREGKLHHALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred HHHcCCCCeeEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 344555 49999999999997543 33344443
No 377
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.62 E-value=1.1 Score=43.35 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH-HHHHHHHHHhhhcCC
Q 015946 167 IQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA-DQGFHMAKFISHCAR 244 (397)
Q Consensus 167 iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa-~Qv~~~~~~~~~~~~ 244 (397)
.|-+.|+-.+ .|..+++.|+.|.|||++.+.-.+..................++||. -||- ..+.+.++.+....+
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs--lEl~re~~L~Rl~~v~a~mg 154 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS--LELYREDILERLEPVRARMG 154 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE--eccChHHHHHHHHHHHHHcC
Confidence 4555555443 56678888999999999877666555443332221122344666664 2222 334455555555445
Q ss_pred cceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC--CHHHHHHHHHHhhhhh
Q 015946 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSA 322 (397)
Q Consensus 245 ~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~l~~~~ 322 (397)
+..+-+-- .. ........+.-=+-.| .|++-.... ..-.+-+++|||=.=.++... ...++...++.+++.+
T Consensus 155 LsPadvrn-~d---ltd~~Gaa~~~d~l~p-kl~rRfek~-~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla 228 (402)
T COG3598 155 LSPADVRN-MD---LTDVSGAADESDVLSP-KLYRRFEKI-LEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLA 228 (402)
T ss_pred CChHhhhh-ee---ccccccCCCccccccH-HHHHHHHHH-HHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHH
Confidence 43211000 00 0000000011112344 443332211 112345789999766554332 5678888888887665
Q ss_pred hccCCCCceEEEEeccCCCC
Q 015946 323 LKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~ 342 (397)
.+..+-+|.++-|.-..
T Consensus 229 ---~~l~caIiy~hHtskss 245 (402)
T COG3598 229 ---RNLECAIIYIHHTSKSS 245 (402)
T ss_pred ---HhcCCeEEEEecccccc
Confidence 33578899988776443
No 378
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.62 E-value=0.6 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpi 199 (397)
+-.|++||.|+|||.+.-+-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347899999999998765543
No 379
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.62 E-value=0.23 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 165 SEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~--dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
++.|...+..++... =+|+.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 567777777777544 389999999999986 3445555543
No 380
>PRK10436 hypothetical protein; Provisional
Probab=92.58 E-value=0.5 Score=48.41 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 166 EIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 166 ~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
+-|...|..+. .+.-+|++||||||||... ..++..+
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 34555554443 3456999999999999864 2345544
No 381
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.56 E-value=0.1 Score=52.07 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=37.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
++++.|+||||||.++++|.+-. ....+||+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 57999999999999999887642 2347888889999987766555443
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.54 E-value=1.6 Score=40.39 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=32.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccC--CCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~--~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
-.++.||.|+|||+..+--++.......... .....+.+++|++-- .=..++.+.+..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E-d~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE-DPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC-CCHHHHHHHHHHHHh
Confidence 4689999999999876554444332211111 011235578888722 222334444444444
No 383
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.45 E-value=1.4 Score=39.06 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=19.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...-+++||||+|.|. ......++..+.
T Consensus 94 ~~~~kviiide~~~l~----~~~~~~Ll~~le 121 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN----EAAANALLKTLE 121 (188)
T ss_pred cCCeEEEEEechhhhC----HHHHHHHHHHhc
Confidence 4667899999999884 334555666654
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.40 E-value=0.23 Score=44.27 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~ 195 (397)
|.+.|+ +++-|...+.. +..|..++++|+||||||..+
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344454 45667777765 456889999999999999764
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.38 E-value=0.75 Score=50.08 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=32.3
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|++++-....++.+.++ -+.++.-++.. .+..++.+++.||+|+|||+..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHHH
Confidence 346788887666666665543 12221111111 1234678999999999999753
No 386
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.37 E-value=0.12 Score=48.44 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=14.1
Q ss_pred EEEEcCCCCchHHHHH
Q 015946 181 VVLSSGSGSGRTLAYL 196 (397)
Q Consensus 181 vlv~apTGsGKTl~~~ 196 (397)
+|++|+|||||+...+
T Consensus 130 viiVGaTGSGKSTtmA 145 (375)
T COG5008 130 VIIVGATGSGKSTTMA 145 (375)
T ss_pred EEEECCCCCCchhhHH
Confidence 8999999999998754
No 387
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.32 E-value=0.34 Score=48.57 Aligned_cols=53 Identities=28% Similarity=0.409 Sum_probs=29.7
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
...|++++--+..++.+... .+.++..++... +..-+.+++.||+|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHH
Confidence 45677887655555555432 122221111110 112357999999999999764
No 388
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.28 E-value=0.18 Score=51.70 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.++++.||||||||..|++|.+-. . ..-+||.=|--+|.......++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997631 1 226888889999887766655554
No 389
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=1 Score=47.64 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
-.|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987655
No 390
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=2.1 Score=44.87 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
.+|++||.|+|||....+-+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765433
No 391
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=0.95 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=19.4
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...+++||||||.|- ......+++.+.
T Consensus 120 ~~~KViIIDEad~Lt----~~a~naLLK~LE 146 (620)
T PRK14948 120 ARWKVYVIDECHMLS----TAAFNALLKTLE 146 (620)
T ss_pred CCceEEEEECccccC----HHHHHHHHHHHh
Confidence 567899999999874 345556666665
No 392
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=1.7 Score=45.33 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
....+++||||+|.|.. .....+++.+.. .+..+.+|+++
T Consensus 117 ~~~~kVvIIDEad~ls~----~a~naLLK~LEe-----pp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK----SAFNAMLKTLEE-----PPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCH----HHHHHHHHHHhC-----CCCCEEEEEEe
Confidence 35678999999998742 344556666642 11345566554
No 393
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.19 E-value=0.46 Score=46.29 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=18.9
Q ss_pred HHHhCCCcEEEEcCCCCchHHHH
Q 015946 173 PAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 173 ~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
-.+..++++++.|++|+|||...
T Consensus 59 ~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 59 AGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHhcCCcEEEEeCCCChHHHHH
Confidence 34556889999999999999754
No 394
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=1.3 Score=43.05 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~---dvlv~apTGsGKTl~~ 195 (397)
.++|||...|..+. .|+ -.+++||.|.||+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA 42 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV 42 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 46788888887765 444 5999999999999654
No 395
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.23 Score=49.27 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=57.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~ 258 (397)
+|+++.||.|+|||+.. |+|+ ...|+...+..||.-..-
T Consensus 385 RNilfyGPPGTGKTm~A------------------------------relA-----------r~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA------------------------------RELA-----------RHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hheeeeCCCCCCchHHH------------------------------HHHH-----------hhcCCceehhcCCCcccc
Confidence 68999999999999863 1222 233666666666632211
Q ss_pred HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhhhhhhccCCCCceEEE
Q 015946 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTIL 334 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~~~~~~~~~~~~q~i~ 334 (397)
-.+ -|+-...|.++-....- ==+|.|||||.+|-.. .....+..++.+.. ........+++
T Consensus 424 G~q--------aVTkiH~lFDWakkS~r----GLllFIDEADAFLceRnktymSEaqRsaLNAlLf---RTGdqSrdivL 488 (630)
T KOG0742|consen 424 GAQ--------AVTKIHKLFDWAKKSRR----GLLLFIDEADAFLCERNKTYMSEAQRSALNALLF---RTGDQSRDIVL 488 (630)
T ss_pred chH--------HHHHHHHHHHHHhhccc----ceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH---HhcccccceEE
Confidence 100 12333445555543211 1258899999877432 23333444444332 22334567888
Q ss_pred Eecc
Q 015946 335 VTAA 338 (397)
Q Consensus 335 ~SAT 338 (397)
+=||
T Consensus 489 vlAt 492 (630)
T KOG0742|consen 489 VLAT 492 (630)
T ss_pred Eecc
Confidence 8887
No 396
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.12 E-value=0.31 Score=50.50 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=31.4
Q ss_pred cccccccCCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKM-G-LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~-g-~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++.-.+.+...+.+. . +..+..++... ....+.+|+.||+|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 356788887766666555432 0 22222222111 112357999999999999864
No 397
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.61 Score=48.62 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=32.3
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 138 EVVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
-+..+|++.|--..+...|.-. -+.+|-.++.-.+. .-..+|++||.|+||||..
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 3456899988766666555422 12222222222111 1246999999999999853
No 398
>PRK06749 replicative DNA helicase; Provisional
Probab=92.12 E-value=2.7 Score=42.70 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=29.8
Q ss_pred cceEEEcCCCccccC-----CCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 291 IRYVVLDEADTLFDR-----GFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 291 l~~lVlDEah~~l~~-----~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
..+||||=.+.|... .....+..|.+.|+..... -++.+|++|.
T Consensus 300 ~~lvvIDyLqli~~~~~~~~~r~~ei~~isr~LK~lAke---l~vpVi~lsQ 348 (428)
T PRK06749 300 KILIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARE---LNVCVVALSQ 348 (428)
T ss_pred CcEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEEe
Confidence 459999999977521 1345677788887765532 3678888873
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.12 E-value=0.28 Score=43.51 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
.+-+++++||...-+|......+..++..+.. .+.++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-------~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-------HTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEECC
Confidence 56789999999998887777766666665531 24677777643
No 400
>PRK13764 ATPase; Provisional
Probab=92.06 E-value=0.36 Score=50.93 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
.+++++++|+||||||... -.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4678999999999999753 44555554
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.01 E-value=0.43 Score=47.52 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
.+..++++||||||||... -.++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 3457999999999999764 345555543
No 402
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.85 E-value=0.91 Score=48.07 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpi 199 (397)
.+|+.||.|+|||.+..+-+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58899999999998765544
No 403
>PF12846 AAA_10: AAA-like domain
Probab=91.84 E-value=0.31 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
+.++++.|+||+|||.....-+.+.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 36899999999999988764443333
No 404
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.75 E-value=1.8 Score=43.54 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
+.+|+.||.|+|||.....
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4589999999999976443
No 405
>CHL00176 ftsH cell division protein; Validated
Probab=91.73 E-value=0.45 Score=50.74 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+.+++.||+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 406
>PRK09087 hypothetical protein; Validated
Probab=91.73 E-value=3.2 Score=38.27 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+.-+++.|++|+|||-...
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3459999999999996543
No 407
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.67 E-value=0.43 Score=51.96 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=32.3
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|++++-.+.+.+.|.+. .+.++..++... +...+.+++.||+|+|||+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 45788888777777777653 122211111110 112356999999999999764
No 408
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.87 Score=45.77 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=20.0
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+..-+++||||+|.|. ......+++.+.
T Consensus 125 ~~~~kvvIIdea~~l~----~~~~~~LLk~LE 152 (397)
T PRK14955 125 KGRYRVYIIDEVHMLS----IAAFNAFLKTLE 152 (397)
T ss_pred cCCeEEEEEeChhhCC----HHHHHHHHHHHh
Confidence 4667899999999884 234555666664
No 409
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.56 E-value=1.3 Score=46.89 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=19.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+..-++|||||+|.|. ...+..+++.+.
T Consensus 118 ~~~~kVvIIDEa~~L~----~~a~naLLk~LE 145 (585)
T PRK14950 118 LARYKVYIIDEVHMLS----TAAFNALLKTLE 145 (585)
T ss_pred cCCeEEEEEeChHhCC----HHHHHHHHHHHh
Confidence 4567899999999874 244555666654
No 410
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.062 Score=52.84 Aligned_cols=56 Identities=27% Similarity=0.465 Sum_probs=33.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCC-----CCcH----------HHHHH-----HHHHhCC-----CcEEEEcCCCCchHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLF-----VPSE----------IQCVG-----IPAVLNG-----KSVVLSSGSGSGRTL 193 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~-----~~~~----------iQ~~a-----i~~i~~g-----~dvlv~apTGsGKTl 193 (397)
....|+.++....+.++|..-=+. +... ++..+ +|.++.| +.||..||.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 345677788777777777541000 1111 12222 2333444 579999999999998
Q ss_pred H
Q 015946 194 A 194 (397)
Q Consensus 194 ~ 194 (397)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 4
No 411
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.49 E-value=0.67 Score=48.85 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~i~~--g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
|.++|| .+-|...|..++. +.-++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 456665 3456666655443 346899999999999874 3345544
No 412
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.48 E-value=2 Score=47.70 Aligned_cols=45 Identities=9% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
..--+||||++|.+-+......+..++..++ ++..+|+.|-+.++
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~--------~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQP--------ENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCC--------CCeEEEEEeCCCCC
Confidence 3345899999998754445567777777665 57788888876443
No 413
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.43 E-value=1.5 Score=46.30 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+..+.+++..+... ++.+..++|+.+...+...+ ....+|||||- .+. ..+++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCccC
Confidence 3568999999999999988877653 67899999998876655443 34689999993 333 4678899
Q ss_pred cceEEEcCC
Q 015946 291 IRYVVLDEA 299 (397)
Q Consensus 291 l~~lVlDEa 299 (397)
+++||.-++
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 998886543
No 414
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.42 E-value=1.3 Score=43.52 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHH
Q 015946 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~g~---dvlv~apTGsGKTl~~~ 196 (397)
.+|||...|..+. +|+ -.|+.||.|.||+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5688888887765 444 58899999999997643
No 415
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.40 E-value=3.5 Score=44.07 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCCceEEEcCchhH--------HHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHh
Q 015946 215 MHPRAIVLCTTEES--------ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (397)
Q Consensus 215 ~~~~~lvl~PtreL--------a~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~ 282 (397)
.+.+++|+||+.+- +..+++.+.... .++.+..++|+.+.......+ .+..+|||+|. +-
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vi 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT------VI 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------ee
Confidence 36689999998642 333444444322 468899999998876655433 34689999994 23
Q ss_pred cCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 283 ~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
..++++.+++++|+..+++. + ..++.....+..
T Consensus 519 e~GvDiP~v~~VIi~~~~r~---g-ls~lhQ~~GRvG 551 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERF---G-LSQLHQLRGRVG 551 (630)
T ss_pred ecCcccCCCcEEEEeCCCcC---C-HHHHHHHhhhcc
Confidence 35788999999999888864 1 334444444443
No 416
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.38 E-value=3.6 Score=37.60 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=40.6
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECL 349 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l 349 (397)
..+-+++|+|-...+.-..-..++..++..++..+ ..-++|++|+.-..- ++..-.+
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~-----d~gKvIilTvhp~~l~e~~~~ri 178 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS-----DLGKVIILTVHPSALDEDVLTRI 178 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH-----hCCCEEEEEeChhhcCHHHHHHH
Confidence 45667999999997765555667888888888776 567899999874433 4444433
No 417
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.37 E-value=1.8 Score=42.23 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
.|+-+.+.||+|||||...+-.+.. ... .+..++|+..-..+-
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~-~~~---------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE-AQK---------AGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH---------cCCcEEEEcccchhH
Confidence 4567999999999999765444433 332 356778875544443
No 418
>PHA02542 41 41 helicase; Provisional
Probab=91.34 E-value=1.7 Score=44.68 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=38.1
Q ss_pred ChHHHHHHHhcCCCCC-CCcceEEEcCCCccccC-------CCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 273 TPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFDR-------GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 273 TP~~L~~~l~~~~~~l-~~l~~lVlDEah~~l~~-------~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
|+..+...+++-...- ..+++||||=.+.|-+. .....+..|.+.|+..... -++.+|++|..
T Consensus 283 t~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAke---l~vpVi~lsQL 353 (473)
T PHA02542 283 HAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVE---HDVVVWTAAQT 353 (473)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHH---hCCeEEEEEee
Confidence 4455555544321111 13789999999987522 2455677787777765432 36788888754
No 419
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.33 E-value=0.64 Score=50.93 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|..+++.||+|+|||...
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3557999999999999754
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.32 E-value=0.62 Score=45.65 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
++..+++++|+|+||||||... -.++..+. ..-+++++=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTTll-~aL~~~ip----------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFT-NAALREIP----------AIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHH-HHHHhhCC----------CCCeEEEecCCCccc
Confidence 4557889999999999999753 33444332 233566655555554
No 421
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.24 E-value=1.7 Score=44.92 Aligned_cols=60 Identities=23% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 170 VGIPAVLN-----GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 170 ~ai~~i~~-----g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+..++. |.-+++.+++|+|||...+--+...+. ++-+++|++ ..|-..|+...+..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555553 457999999999999854444433332 355788876 6777778777777663
No 422
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.24 E-value=0.26 Score=48.87 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5678999999999999864 33444443
No 423
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.23 E-value=1.2 Score=40.51 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
|.-+++.|++|+|||...+--+.... . .+..++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~-~---------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA-G---------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-h---------cCCeEEEEE
Confidence 45689999999999976544443332 2 355777774
No 424
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.67 Score=49.17 Aligned_cols=96 Identities=22% Similarity=0.213 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.=++++||.|.|||-. +..+++.+.+- -+-+..||...
T Consensus 349 kGpILcLVGPPGVGKTSL----------------------------------gkSIA~al~Rk------fvR~sLGGvrD 388 (782)
T COG0466 349 KGPILCLVGPPGVGKTSL----------------------------------GKSIAKALGRK------FVRISLGGVRD 388 (782)
T ss_pred CCcEEEEECCCCCCchhH----------------------------------HHHHHHHhCCC------EEEEecCcccc
Confidence 344589999999999952 33333333221 12234466655
Q ss_pred HHHHHHhcCCccEEEe-ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 257 KALEDVSNAPIGMLIA-TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~-TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
...++ +.-.-.|| -||++.+-|..-... =-+++|||+|.|...-.++--..++.-|
T Consensus 389 EAEIR---GHRRTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 389 EAEIR---GHRRTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred HHHhc---cccccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 54333 22234455 799999999864332 1378999999998765666555555554
No 425
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.08 E-value=1.3 Score=46.17 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
....+++||||||.|. ......+++.+... +..+.+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt----~~A~NALLK~LEEp-----p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLT----KEAFNALLKTLEEP-----PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCC----HHHHHHHHHHHhhc-----CCceEEEEEE
Confidence 3567899999999874 34445555555421 2455666655
No 426
>PRK13695 putative NTPase; Provisional
Probab=91.07 E-value=5.1 Score=34.99 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~l 197 (397)
.+++.|+.|+|||.....
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987663
No 427
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.05 E-value=0.7 Score=50.28 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
..++|+.||+|+|||...-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998743
No 428
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.05 E-value=1.2 Score=45.86 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=56.1
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhc----CCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
...++||.|-|+.-|.++...++.. ++.+.++||+.+..+....+. ..+.|||+|- +..+.+++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 5679999999999999988777664 478999999999887766653 4589999994 2335677888
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
|++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 887763
No 429
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.77 Score=45.03 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=36.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHH----HHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai----~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..-+|.++|=-+.+.+.|++.=+ .|.|..-+ ..+...+.+++-+|.|+|||++.
T Consensus 87 I~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 35589999988889888877522 22222111 11223468999999999999864
No 430
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=1 Score=43.64 Aligned_cols=193 Identities=17% Similarity=0.123 Sum_probs=94.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc-eEEEcC-----------chhHHHHHHHHHHHhhhcCCc
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR-AIVLCT-----------TEESADQGFHMAKFISHCARL 245 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~-~lvl~P-----------treLa~Qv~~~~~~~~~~~~~ 245 (397)
++=+++.||.|+|||.. +-.+.+.+.-+. ..+... .+|=.. +--|+.++++.+..+...-+.
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~-----~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRT-----NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeee-----cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 34589999999999943 344445543221 112222 233223 334677777777777766665
Q ss_pred ceeeecCCC---------------Ch---------HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 246 DSSMENGGV---------------SS---------KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 246 ~v~~~~g~~---------------~~---------~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
-|+++.... +. -.|...+++.++++|-|-..|. +.++.-.||-||-
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~----------~siD~AfVDRADi 320 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT----------DSIDVAFVDRADI 320 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH----------HHHHHHhhhHhhh
Confidence 444443211 11 1144456666667665544443 3455566788885
Q ss_pred cccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEec-cCCC--C----hhHHHhhhhcc-----CCceeeEEeecCce
Q 015946 302 LFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTA-AIAE--L----SSLMECLERDN-----AGKVTAMLLEMDQA 367 (397)
Q Consensus 302 ~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA-Tl~~--~----~~l~~~l~~~~-----~~~v~~~~~~v~~~ 367 (397)
...-| -...+..|++.+-.-. -..++|.+=+ |..- . +....++.... ...+....+-+.-.
T Consensus 321 ~~yVG~Pt~~ai~~IlkscieEL-----~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~ 395 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKSCIEEL-----ISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAE 395 (423)
T ss_pred eeecCCccHHHHHHHHHHHHHHH-----HhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHh
Confidence 54444 2223333333222111 1456666665 3222 1 22233333222 22222222222222
Q ss_pred eeEEeccChHHHHHHHHHHHHccc
Q 015946 368 EVFDLTESQDALKKKVVEAMDSLH 391 (397)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~l~ 391 (397)
+.-...-++++.-.+++++++...
T Consensus 396 y~~~~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 396 YFRTFTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred ccCCCccChHHHHHHHHHHHHHHh
Confidence 222245567777888888777653
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.01 E-value=0.96 Score=42.82 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=27.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~i~~--g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
|.++|+ .+-|.+.|..++. +..++++|+||||||... -.++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 455564 3446666654442 346899999999999764 2344443
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.99 E-value=3.9 Score=35.60 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=14.9
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 015946 181 VVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpi 199 (397)
+++.|++|+|||....--+
T Consensus 3 ~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998754433
No 433
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.89 E-value=2.8 Score=44.94 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+..+..+...+... ++.+..++|+......... ..+..+|+||| +.+ ..++++.+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cCCeeeCC
Confidence 5778999999999999988877664 6788888888765443322 23558999999 223 35778899
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
++++|+-+++.. |+.......+.++.+... . .+..++++--..+.
T Consensus 511 v~lVvi~Dadif---G~p~~~~~~iqriGRagR--~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 511 VSLVAILDADKE---GFLRSERSLIQTIGRAAR--N-VNGKVIMYADKITD 555 (655)
T ss_pred CcEEEEeCcccc---cCCCCHHHHHHHhcCCCC--C-CCCEEEEEEcCCCH
Confidence 999998888864 333333344444433221 1 23456666555553
No 434
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.89 E-value=14 Score=36.37 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=19.1
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEKMGLFVP 164 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~ 164 (397)
..++......|+++.+++.|++.||...
T Consensus 28 ~~~~~~l~~~g~~~~~~~kL~~~g~~tv 55 (344)
T PLN03187 28 FESIDKLISQGINAGDVKKLQDAGIYTC 55 (344)
T ss_pred ccCHHHHhhCCCCHHHHHHHHHcCCCcH
Confidence 4445556667788888888887777633
No 435
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.63 E-value=0.31 Score=51.91 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=92.4
Q ss_pred CCcHHHHHHHHHHhC--------CC--cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 163 VPSEIQCVGIPAVLN--------GK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~--------g~--dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
+++..|.+++-.... |. ..|+--..|.||--..+--|++..++ ...++|.+.-+..|-.+.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk---------GRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK---------GRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc---------ccceeEEEEeccccccch
Confidence 567789988876553 22 35555555555543333334454444 355899999999998888
Q ss_pred HHHHHHhhhcCCcceeeecCC----CChHHHHHHhcCCccEEEeChHHHHHHHhcC---------------CCCCCCcce
Q 015946 233 FHMAKFISHCARLDSSMENGG----VSSKALEDVSNAPIGMLIATPSEVLQHIEDR---------------NVSCDDIRY 293 (397)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~g~----~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~---------------~~~l~~l~~ 293 (397)
.+.+..++.. ++.|..+.-- .+.... -+-.-.|+++|.-.|.---+.. .-++. .+
T Consensus 335 ERDL~DigA~-~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe--Gv 408 (1300)
T KOG1513|consen 335 ERDLRDIGAT-GIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE--GV 408 (1300)
T ss_pred hhchhhcCCC-Cccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc--ee
Confidence 8888887543 4655543221 111110 0111368999986654322211 11122 57
Q ss_pred EEEcCCCcccc---C------CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 294 VVLDEADTLFD---R------GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 294 lVlDEah~~l~---~------~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
||+||||.-=+ . ..+..+..+-+.|+ +.+++..|||=...
T Consensus 409 IvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---------~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 409 IVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---------NARVVYASATGASE 457 (1300)
T ss_pred EEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---------CceEEEeeccCCCC
Confidence 99999996432 1 14666777777774 78999999996544
No 436
>PHA02535 P terminase ATPase subunit; Provisional
Probab=90.59 E-value=2.1 Score=44.85 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
+++.....|...-...++++|...+..-+..+.-++.-.--.|+|..|..-++..... .|-..|+|+|+++
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~---------~G~nqiflSas~~ 193 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL---------TGRNQIFLSASKA 193 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh---------cCCceEEECCCHH
Confidence 5666677776665678999999987653223545555556689999998877776664 3557899999999
Q ss_pred HHHHHHHHHHHhhh
Q 015946 228 SADQGFHMAKFISH 241 (397)
Q Consensus 228 La~Qv~~~~~~~~~ 241 (397)
.+.+....+..+..
T Consensus 194 QA~~f~~yi~~~a~ 207 (581)
T PHA02535 194 QAHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987777766644
No 437
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.55 E-value=1.6 Score=46.10 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpi 199 (397)
+.+|++||.|+|||....+-+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999998755433
No 438
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=1.9 Score=45.88 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCcHHHHHHHHHHh--------CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL--------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~--------~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
-+..+-.+++..+. .|+=+++.||+|.|||-+. ..|++
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~----------------------------------kSIA~ 460 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA----------------------------------KSIAR 460 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH----------------------------------HHHHH
Confidence 45667777777653 4677999999999999642 22222
Q ss_pred HHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEe-ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHH
Q 015946 235 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA-TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~-TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~ 313 (397)
.+.+- +..+ -.||...... ++....-+|| -||++.+.|+.-... =-++.|||+|.+.....++--..
T Consensus 461 ALnRk--FfRf----SvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasA 528 (906)
T KOG2004|consen 461 ALNRK--FFRF----SVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASA 528 (906)
T ss_pred HhCCc--eEEE----eccccccHHh---hcccceeeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHH
Confidence 22221 1111 2345443332 3333445555 799999999864332 13688999999873334444444
Q ss_pred HHHHh
Q 015946 314 ILNPL 318 (397)
Q Consensus 314 il~~l 318 (397)
++..|
T Consensus 529 LLElL 533 (906)
T KOG2004|consen 529 LLELL 533 (906)
T ss_pred HHHhc
Confidence 44433
No 439
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.38 E-value=1.7 Score=43.85 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=54.9
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+|+..+..++..+... ++.+..++|+.....+...+ .+.++|||||- . -..++++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v-~~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----V-AARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----h-hhcCCCcccc
Confidence 458999999999998888777543 78899999998876655433 45689999993 2 2357788999
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||.-
T Consensus 325 ~~VI~~ 330 (423)
T PRK04837 325 THVFNY 330 (423)
T ss_pred CEEEEe
Confidence 887654
No 440
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.78 Score=45.99 Aligned_cols=57 Identities=26% Similarity=0.249 Sum_probs=36.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH----HHHHHHHHHhhhcCCcce
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAKFISHCARLDS 247 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa----~Qv~~~~~~~~~~~~~~v 247 (397)
-|+|+.+|||||||+... .|..+. .-|.+|.=|-|-.-| .++...+..+....+++|
T Consensus 227 SNvLllGPtGsGKTllaq--TLAr~l----------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV 287 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ--TLARVL----------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV 287 (564)
T ss_pred ccEEEECCCCCchhHHHH--HHHHHh----------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCH
Confidence 479999999999998643 333333 356677666655433 345556666666555544
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.25 E-value=0.97 Score=45.29 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=17.8
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
+-.|+-+++.||+|+|||...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH
Confidence 347889999999999999753
No 442
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.20 E-value=1.8 Score=39.55 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P 224 (397)
.|.-+++.|++|+|||...+-.+.+.+. .+..++|+.-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~----------~~~~v~yi~~ 59 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK----------NGKKVIYIDT 59 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEEC
Confidence 3567899999999999765444444332 2446777654
No 443
>PHA00149 DNA encapsidation protein
Probab=90.20 E-value=9.5 Score=36.40 Aligned_cols=169 Identities=10% Similarity=0.082 Sum_probs=89.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH
Q 015946 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (397)
Q Consensus 182 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 261 (397)
++.|.-|-|||.+..--++..+.. .|-+-|+|=-...-....-..+........-.--.+-|. .
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~---------kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vkg~-------k 84 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIK---------KGEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVKGR-------K 84 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHh---------cCcEEEEEEecchhhhhhhhhhHHHHHhCCCCceEEEcc-------E
Confidence 455999999999988877777766 466788875444333222233332222111111111220 1
Q ss_pred HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc-cccCCC----HHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDRGF----GPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 262 ~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~-~l~~~f----~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
..-++-.|...-|-.-+..++ .....++.+|++||.-. --.+++ ...+..++..+.+.+ .+++++++|
T Consensus 85 i~~~~k~igy~i~LS~~q~~K--s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~R-----e~vr~~~ls 157 (331)
T PHA00149 85 IYIKGKLIGYAIPLSTWQALK--SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRAR-----ERVRCICLS 157 (331)
T ss_pred EEEcCeEEEEEEehhhHHhhc--ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhh-----cCeEEEEEc
Confidence 111233455555544455444 55678999999999865 222232 234555555555444 579999999
Q ss_pred ccCCCChhHHHhhhhccCCceeeEEeecCceeeEEeccCh
Q 015946 337 AAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQ 376 (397)
Q Consensus 337 ATl~~~~~l~~~l~~~~~~~v~~~~~~v~~~~~~~~~~~~ 376 (397)
-..+.-..+...+.-.|-.. ..+.+.....+.+.++.
T Consensus 158 Na~~~~NPyF~yfg~~~d~~---k~f~~~~~~li~f~~~~ 194 (331)
T PHA00149 158 NAVSIVNPYFLYFGLYPDIN---KRFNVYDEILIEFPNSE 194 (331)
T ss_pred CcccccchhhheeccccCCC---cceeecccEEEEecChH
Confidence 66554444444444422111 12224444455555433
No 444
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.16 E-value=1.6 Score=40.12 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P 224 (397)
.|.-+.+.|++|+|||...+--++........ .+.+..++++.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~----~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIEL----GGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCcccc----CCCCccEEEEeC
Confidence 45678999999999997655444432221100 112357788774
No 445
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.13 E-value=2.1 Score=43.30 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=55.3
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
...++||.|++++-+..++..+.. .++.+..++|+.+...+...+ ....+|||||- . ...++++.+
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~-~~~GiDip~ 313 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----V-AARGIDIDD 313 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----c-cccCccCCC
Confidence 356899999999999998887765 378899999998876665443 34589999993 2 234678899
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
+++||.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 998873
No 446
>PRK07773 replicative DNA helicase; Validated
Probab=90.06 E-value=2.5 Score=47.05 Aligned_cols=145 Identities=16% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~~~ 255 (397)
.|.-+++.|++|+|||...+--+...... .+..++|++ ...-..|+...+-... .++....+ .|...
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~---------~~~~V~~fS-lEms~~ql~~R~~s~~--~~i~~~~i~~g~l~ 283 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIR---------HRLAVAIFS-LEMSKEQLVMRLLSAE--AKIKLSDMRSGRMS 283 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHh---------cCCeEEEEe-cCCCHHHHHHHHHHHh--cCCCHHHHhcCCCC
Confidence 34458899999999997544333333322 233455554 3333344444332221 22222111 22222
Q ss_pred hHHHH------HHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccC----CCHHHHHHHHHHhhh
Q 015946 256 SKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLKD 320 (397)
Q Consensus 256 ~~~~~------~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~l~~ 320 (397)
..... ..+.. ..|.|. |+..+...+..-.. -..+++||||=++.|... .....+..|.+.|+.
T Consensus 284 ~~~~~~~~~a~~~l~~-~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~ 361 (886)
T PRK07773 284 DDDWTRLARAMGEISE-APIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKL 361 (886)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 22211 11222 345542 44444433322111 135899999999987532 134567777777765
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.... -++.+|++|..
T Consensus 362 lAke---l~vpvi~lsQL 376 (886)
T PRK07773 362 LAKE---LEVPVVALSQL 376 (886)
T ss_pred HHHH---HCCcEEEeccc
Confidence 4422 36788888754
No 447
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.04 E-value=0.4 Score=50.72 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.++++.||||||||..|++|-+-.. +.-+||+=|--|+........+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4799999999999999999988642 335888889999887776655554
No 448
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.92 E-value=2.5 Score=39.53 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=22.2
Q ss_pred HHHhCCC-cEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 173 PAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 173 ~~i~~g~-dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
+.+..|+ -+.++|+-|||||..-- .++..+.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 3455666 68999999999998876 4444443
No 449
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.89 E-value=1.1 Score=40.12 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEE
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL 222 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl 222 (397)
....+++..++|.|||.+.+--++..+. .+.+++|+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g----------~G~~V~iv 56 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG----------HGKKVGVV 56 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH----------CCCeEEEE
Confidence 4568999999999999987766666554 35566665
No 450
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.88 E-value=0.9 Score=48.26 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+++-+.+|+|||---||..-...++..+..+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 56788999999999998888888888888775
No 451
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.77 E-value=3.7 Score=40.71 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
....+|++||.| +.|-+=.-.+..+++.+-. .++-+|+.|-+.|+.
T Consensus 126 ~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~-------~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQ-VTDIADAMILKRLFEALFK-------RGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeee-ccchhHHHHHHHHHHHHHH-------CCCEEEecCCCChHH
Confidence 556789999999 4344434445556665542 467888888887766
No 452
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.70 E-value=3.7 Score=37.48 Aligned_cols=52 Identities=27% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.|.-+++.|++|+|||...+--+...+. .+..++|++- .+-..++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~----------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK----------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 3567899999999998643333333332 2456777654 44566666666554
No 453
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.64 E-value=2.4 Score=41.54 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=18.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+..-++|||||+|.|. ......+++.+.
T Consensus 115 ~~~~~vviidea~~l~----~~~~~~Ll~~le 142 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLS----KSAFNALLKTLE 142 (355)
T ss_pred cCCceEEEEeChhhcC----HHHHHHHHHHHh
Confidence 3566799999999874 234455555553
No 454
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.59 E-value=0.9 Score=44.74 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
.+..++++||||||||.... .++..+... .+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~-al~~~i~~~--------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA-SMIDYINKN--------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH-HHHHhhCcC--------CCCEEEEEcCChhh
Confidence 45689999999999998643 334443321 23455655544444
No 455
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.50 E-value=0.49 Score=43.30 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.8
Q ss_pred EEEEcCCCCchHHHH
Q 015946 181 VVLSSGSGSGRTLAY 195 (397)
Q Consensus 181 vlv~apTGsGKTl~~ 195 (397)
++|.|+.|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 479999999999853
No 456
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.47 E-value=1.4 Score=44.12 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=26.3
Q ss_pred cHHHHHHHHHH---hCCCcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 165 SEIQCVGIPAV---LNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 165 ~~iQ~~ai~~i---~~g~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
.++-..+|..+ -.|+-.+|.||.|+|||... --+...+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 44445555544 47889999999999999643 334444443
No 457
>PRK09354 recA recombinase A; Provisional
Probab=89.47 E-value=1.7 Score=42.75 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
.|+-+.+.||+|||||...+..+.... . .+..++||..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H---------cCCcEEEECCccchHH
Confidence 466789999999999986554444433 2 3668888876665553
No 458
>PHA00012 I assembly protein
Probab=89.42 E-value=4.8 Score=39.21 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCCCcceEEEcCCCccccC-CCH----HHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 287 SCDDIRYVVLDEADTLFDR-GFG----PEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 287 ~l~~l~~lVlDEah~~l~~-~f~----~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
+...-.++||||||..+.. +++ ..+...+...+. ...-++++|..+..-...++.+.
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh-------~G~DvilITQ~ps~VDs~IR~ll 139 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARK-------LGWDIIFIIQDISIMDKQAREAL 139 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhcc-------CCceEEEEcCCHHHHhHHHHHhh
Confidence 3456679999999998864 233 334443433332 46789999988776655555443
No 459
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.42 E-value=0.53 Score=44.46 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=29.1
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
+..+.+++++|+||||||... -.++..+.. ...+++++-.+.|+.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~---------~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPP---------EDERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHT---------TTSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchHH-HHHhhhccc---------cccceEEecccccee
Confidence 456789999999999999764 334444433 124667776666653
No 460
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.40 E-value=1.9 Score=46.03 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=30.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~l 197 (397)
...++++-..+..++.+... + .... .....++-+++.||+|+|||.++-+
T Consensus 80 P~~ldel~~~~~ki~~l~~~-l------~~~~-~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETW-L------KAQV-LENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHH-H------Hhcc-cccCCCcEEEEECCCCCCHHHHHHH
Confidence 55678888887766655432 0 0000 0012334599999999999986543
No 461
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.22 E-value=7.3 Score=34.20 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=28.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
++|.|++|||||....--+. . .+.+++|+.-...+-......+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~----~---------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA----E---------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH----h---------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 58899999999975432221 1 245788887776665444444333
No 462
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.18 E-value=6.6 Score=34.48 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
..++|.|++|||||....
T Consensus 2 ~~ili~G~~~sGKS~~a~ 19 (170)
T PRK05800 2 MLILVTGGARSGKSRFAE 19 (170)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 358999999999997543
No 463
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.16 E-value=3.3 Score=42.82 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=18.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...-+++||||||.|. ......++..+.
T Consensus 117 ~~~~KVvIIDEad~Lt----~~a~naLLk~LE 144 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT----KEAFNALLKTLE 144 (486)
T ss_pred cCCeeEEEEEChhhcC----HHHHHHHHHHHh
Confidence 3567899999999774 234455555554
No 464
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.16 E-value=1.9 Score=44.21 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh---c-CCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---N-APIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
..|.+||.+.+..-|.-++..|... +++++.++||....+....+ + +..+|+|||- +...++++.+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCc
Confidence 4678999999998888777766665 68999999999887766554 2 3579999994 2234678888
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
|.+|| +.++...+...+.++.
T Consensus 586 VSlVi--------nydmaksieDYtHRIG 606 (673)
T KOG0333|consen 586 VSLVI--------NYDMAKSIEDYTHRIG 606 (673)
T ss_pred cceee--------ecchhhhHHHHHHHhc
Confidence 88764 2334444454444443
No 465
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.12 E-value=0.42 Score=48.24 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 172 i~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
++.-...+++++.|+||||||.. +..++..+.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 34444567999999999999986 444454444
No 466
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.88 E-value=4 Score=39.85 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
.|+-+.+.||+|||||...+- ++..... .+..++|+..-..+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~-~~~~~~~---------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALH-AIAEAQK---------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHH---------cCCCEEEECccccHHH
Confidence 456789999999999965444 3433333 3667888876555543
No 467
>PRK10263 DNA translocase FtsK; Provisional
Probab=88.79 E-value=1.8 Score=49.11 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
-++||.|.||||||.+..--|+..+..
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~ 1037 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYK 1037 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 368999999999999866556555544
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.76 E-value=0.8 Score=47.74 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
+.+-+.+|+||+-.-+|..-...+...+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5667889999988777766566665555544
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.75 E-value=13 Score=36.41 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=40.4
Q ss_pred EEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHH
Q 015946 269 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLME 347 (397)
Q Consensus 269 IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~ 347 (397)
++|..|+.-.++.....-.+.-.+++||-=+|.....+.......+-..+.....+...-.++++.+||+=... ..+..
T Consensus 174 lvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 174 LLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred EEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 35555554433322211122333579999999654333333333333333211101111236899999987666 55555
Q ss_pred hhhh
Q 015946 348 CLER 351 (397)
Q Consensus 348 ~l~~ 351 (397)
.+..
T Consensus 254 ~I~~ 257 (332)
T PRK09435 254 AIED 257 (332)
T ss_pred HHHH
Confidence 5544
No 470
>PTZ00110 helicase; Provisional
Probab=88.66 E-value=2.9 Score=43.90 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=54.4
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+.-|..+...+.. .++.+..++|+....++...+ .....|||+|- . ...++++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v-~~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----V-ASRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----h-hhcCCCccc
Confidence 366899999999999988887764 367888999988876654432 34578999994 2 234678899
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 998875
No 471
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.51 E-value=1.7 Score=42.86 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=31.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
++|+.||.|+|||...-+-+-.. .....+.|-+..|.+-++++...+..
T Consensus 164 SmIlWGppG~GKTtlArlia~ts----------k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS----------KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc----------CCCceEEEEEeccccchHHHHHHHHH
Confidence 79999999999997654322210 12345667777777777766555444
No 472
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.49 E-value=0.47 Score=47.53 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=20.9
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
...+++++.|.||||||.+ +-.++..+..
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~ 41 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRA 41 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 3567999999999999974 4667777655
No 473
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=88.47 E-value=2.6 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=46.0
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
-|...+|-|..-...+. .+.+.++..|+|+|||.+.+--++..-...+. ...+.|+.+-|..-+......
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~------~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD------EHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc------ccceEEEecCcchHHHHHHHH
Confidence 35667787876554433 45689999999999999877666655444221 244667766665544444444
Q ss_pred HHH
Q 015946 236 AKF 238 (397)
Q Consensus 236 ~~~ 238 (397)
++.
T Consensus 87 l~~ 89 (755)
T KOG1131|consen 87 LKR 89 (755)
T ss_pred HHH
Confidence 433
No 474
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.46 E-value=18 Score=39.15 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCCceEEEcCchh--------HHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHh
Q 015946 215 MHPRAIVLCTTEE--------SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (397)
Q Consensus 215 ~~~~~lvl~Ptre--------La~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~ 282 (397)
.+.+++|+||+.+ -+..+++.+.... .++.+..++|+.+.......+ .+..+|||||. . -
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----v-i 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF--PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----V-I 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----c-e
Confidence 4668999999754 2233344443321 247899999998876655443 34579999994 2 2
Q ss_pred cCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 283 ~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
..++++.+++++|+..++++ + ..++.....+..
T Consensus 542 e~GiDip~v~~VIi~~~~r~---g-ls~lhQ~~GRvG 574 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERF---G-LAQLHQLRGRVG 574 (681)
T ss_pred eeCcccCCCcEEEEeCCCCC---C-HHHHHHHhhccc
Confidence 34788999999999988864 1 234444444443
No 475
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.45 E-value=1.1 Score=47.83 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh--HHHHHHHHHHHhh
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE--SADQGFHMAKFIS 240 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre--La~Qv~~~~~~~~ 240 (397)
..+++|.|+||+|||..+.+-+.+.+.. +..+||+=|-.. |...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~----------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR----------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc----------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 4689999999999998875555555442 456777777754 6666666665553
No 476
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.42 E-value=1.4 Score=46.44 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-.++|+|||-.-+|..-...+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 45668999999998888877777777776554
No 477
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=2.4 Score=43.75 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=34.6
Q ss_pred EEEeC-hHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHH---HHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 269 MLIAT-PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP---EISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 269 IlV~T-P~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~---~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
++||- .-|+.+++..-.- ..-+.|.|||+|.+....-.. ....-+..|..-.+.. .++--+|++.||
T Consensus 376 m~VGvGArRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF-~qNeGiIvigAT 446 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF-KQNEGIIVIGAT 446 (752)
T ss_pred hhhcccHHHHHHHHHHHHh--cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc-CcCCceEEEecc
Confidence 44443 3456666654322 334678899999886443211 2222333332211111 245579999998
No 478
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.30 E-value=0.36 Score=46.47 Aligned_cols=142 Identities=19% Similarity=0.182 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh----HHHHHHHHHHHhhhcCCcceeeecCCC
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKFISHCARLDSSMENGGV 254 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre----La~Qv~~~~~~~~~~~~~~v~~~~g~~ 254 (397)
.|+++.||||||||+... .|..++ .-|.+|-=+.|-. ...++.+.+.++.+.+++.|...-.|.
T Consensus 98 SNILLiGPTGsGKTlLAq--TLAk~L----------nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ--TLAKIL----------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred ccEEEECCCCCcHHHHHH--HHHHHh----------CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 479999999999998643 333333 2455554333322 224556666666666665543222222
Q ss_pred ChHHHHHH---hcCCccEEE-----eChHHHHHHHhcC--------CCCCCCcceEEEcCCCccc-cCCCHHHHHHHHHH
Q 015946 255 SSKALEDV---SNAPIGMLI-----ATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLF-DRGFGPEISKILNP 317 (397)
Q Consensus 255 ~~~~~~~~---~~~~~~IlV-----~TP~~L~~~l~~~--------~~~l~~l~~lVlDEah~~l-~~~f~~~l~~il~~ 317 (397)
-+-+.+.. ...++.|-= |.-..|+.++... +..=.+=.++-+|=-+-++ -.|-+..+..|+..
T Consensus 166 IyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~ 245 (408)
T COG1219 166 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKK 245 (408)
T ss_pred EEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHH
Confidence 11111111 111222210 1123444444321 1112234678888776443 23566777777765
Q ss_pred hhhhhhccCCCCceEEEEeccCCC
Q 015946 318 LKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
-- +-..|+|+|....
T Consensus 246 R~---------~~~~iGF~a~~~~ 260 (408)
T COG1219 246 RL---------GKKGIGFGAEVKS 260 (408)
T ss_pred hc---------cCCcccccccccc
Confidence 32 4578999998853
No 479
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.30 E-value=3.4 Score=42.31 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=53.6
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....+|||||- .+. ..+++.++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCcccC
Confidence 458999999999999888777543 77889999998876655433 34689999993 222 46888999
Q ss_pred ceEEE
Q 015946 292 RYVVL 296 (397)
Q Consensus 292 ~~lVl 296 (397)
++||.
T Consensus 315 ~~VI~ 319 (456)
T PRK10590 315 PHVVN 319 (456)
T ss_pred CEEEE
Confidence 88874
No 480
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=88.17 E-value=0.51 Score=42.77 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=30.8
Q ss_pred CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 265 APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 265 ~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+..++-||||+|+..++..+.+.+..+.+||+|=
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 4578889999999999999999999999999993
No 481
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.12 E-value=2.9 Score=42.73 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=55.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
...+||.|+|+.-+..++..+... ++.+..++|+.+...+...+ ....+|||||- . -..++++.++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v-~~rGiDi~~v 311 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----V-AARGLDIKAL 311 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----c-cccccchhcC
Confidence 457999999999999988877654 67899999998876655433 34589999993 2 2346778888
Q ss_pred ceEEEcCC
Q 015946 292 RYVVLDEA 299 (397)
Q Consensus 292 ~~lVlDEa 299 (397)
++||.-+.
T Consensus 312 ~~VI~~d~ 319 (460)
T PRK11776 312 EAVINYEL 319 (460)
T ss_pred CeEEEecC
Confidence 88875443
No 482
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=88.07 E-value=6.5 Score=38.20 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=33.5
Q ss_pred EEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 269 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 269 IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
|-|-....+.+.+....+ ...-+++|||+||.|- ......+++.+.. +++..+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~----~~aaNaLLK~LEE------Pp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMN----EAAANALLKTLEE------PGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcC----HHHHHHHHHHHhC------CCCCeEEEEEC
Confidence 434444445555544333 3678999999999883 3455556666542 23455555554
No 483
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=88.05 E-value=0.53 Score=44.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHH
Q 015946 170 VGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 170 ~ai~~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
.++..+..|+++++.|++|+|||.+..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344556689999999999999998653
No 484
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=88.04 E-value=18 Score=34.98 Aligned_cols=171 Identities=9% Similarity=0.110 Sum_probs=89.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH-HHHHhhhc-CCcceeeecCCCChHH
Q 015946 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHC-ARLDSSMENGGVSSKA 258 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~-~~~~~~~~-~~~~v~~~~g~~~~~~ 258 (397)
-+|.|.-|-|||.+..--++..+.. .|.+.|+|=-...-+..+.. .+..+.+. .+.... +-|.
T Consensus 20 ~~viG~RgiGKtya~k~~~i~df~~---------~G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~-vk~~----- 84 (333)
T PF05894_consen 20 NFVIGARGIGKTYALKKKLIKDFIE---------YGEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFE-VKGN----- 84 (333)
T ss_pred EEEEecccccchhHHHHHHHHHHHh---------cCCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEE-EEcc-----
Confidence 3555999999999988888887776 47788888554443333322 22222221 121111 1110
Q ss_pred HHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC---C----HHHHHHHHHHhhhhhhccCCCCce
Q 015946 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---F----GPEISKILNPLKDSALKSNGQGFQ 331 (397)
Q Consensus 259 ~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~---f----~~~l~~il~~l~~~~~~~~~~~~q 331 (397)
...-++-.|...+| |-.+-...+....++.+||+||+= .+.+ + ...+..++..+.+.. ..+.
T Consensus 85 --k~~idgk~~g~~~~--Ls~~q~~Ks~~Yp~V~~IvfDEfi--~ek~~~~y~~nEv~~Lln~i~TV~R~r-----d~i~ 153 (333)
T PF05894_consen 85 --KIYIDGKLIGYFIP--LSGWQKLKSSSYPNVYTIVFDEFI--IEKSNWRYIPNEVKALLNFIDTVFRFR-----DRIR 153 (333)
T ss_pred --EEEECCeEEEEEEe--cchhhhcccCCCCcEEEEEEEEEE--ecCcccCCCchHHHHHHHHHHHHhhcc-----cceE
Confidence 01112223333344 333333345667999999999985 2333 1 223444444444333 6899
Q ss_pred EEEEeccCCCChhHHHhhhhccCCceeeEEeecCceeeEEeccChHHHHH
Q 015946 332 TILVTAAIAELSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKK 381 (397)
Q Consensus 332 ~i~~SATl~~~~~l~~~l~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 381 (397)
++++|--.+--...-..|...|-.... +.+....++.+.. ..+...
T Consensus 154 vicl~Navs~~NPyF~~~~~~p~~~k~---~~~~~~~~I~~~~-~~~f~~ 199 (333)
T PF05894_consen 154 VICLSNAVSIYNPYFDYFKLYPDINKR---FVVNNEALIQFPN-SKDFQS 199 (333)
T ss_pred EEEEeccccccChHHHhhcccCCCCcc---eEecceEEEEecC-hHHHHH
Confidence 999996444434455555554422222 2244444444444 344433
No 485
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.98 E-value=0.68 Score=49.62 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=36.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.++++.||||||||..|++|-+-.. ..-+||+=|--|+........+.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 4899999999999999999986531 23678888888887766554444
No 486
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.74 E-value=6.7 Score=41.84 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=19.6
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+..-+++||||+|.|. ......+++.+.
T Consensus 119 ~~~~KVvIIdea~~Ls----~~a~naLLK~LE 146 (614)
T PRK14971 119 IGKYKIYIIDEVHMLS----QAAFNAFLKTLE 146 (614)
T ss_pred cCCcEEEEEECcccCC----HHHHHHHHHHHh
Confidence 4678899999999884 234555555554
No 487
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=1.6 Score=45.92 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=35.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+.-+|+++|=-+++.+.|+.. ...+|-.+.... +..-+-||+.||.|+|||+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 345799998777777777642 333333333332 223468999999999999865
No 488
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=87.63 E-value=1.2 Score=43.46 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
|.=.++.||||||||.-..-..+....
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~ 299 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFT 299 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHh
Confidence 345899999999999765555555443
No 489
>PHA00350 putative assembly protein
Probab=87.55 E-value=3.7 Score=41.21 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=16.5
Q ss_pred EEEEcCCCCchHHHHHHH-HHHHH
Q 015946 181 VVLSSGSGSGRTLAYLLP-LVQML 203 (397)
Q Consensus 181 vlv~apTGsGKTl~~~lp-il~~l 203 (397)
.++.|..|||||+..+-- ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478999999999876543 44333
No 490
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.55 E-value=2 Score=46.29 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...-+++||||||.|. ......++..|.
T Consensus 116 ~g~~KV~IIDEa~~LT----~~A~NALLKtLE 143 (725)
T PRK07133 116 QSKYKIYIIDEVHMLS----KSAFNALLKTLE 143 (725)
T ss_pred cCCCEEEEEEChhhCC----HHHHHHHHHHhh
Confidence 3677899999999874 345556666664
No 491
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.45 E-value=3.7 Score=44.72 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
.|+|+.||+|+|||...-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4899999999999987533
No 492
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.37 E-value=9.3 Score=37.75 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+...++|||||+|.|. ...+..++..+.
T Consensus 106 ~~~~kiviIDE~~~l~----~~~~~~ll~~le 133 (367)
T PRK14970 106 TGKYKIYIIDEVHMLS----SAAFNAFLKTLE 133 (367)
T ss_pred cCCcEEEEEeChhhcC----HHHHHHHHHHHh
Confidence 4567899999999774 234555665554
No 493
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.37 E-value=0.64 Score=44.66 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
.++++.||.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999654
No 494
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.36 E-value=0.44 Score=45.37 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.2
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..++.++++||+|+|||...
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHH
Confidence 457889999999999999854
No 495
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.29 E-value=3.7 Score=43.24 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
....+++||||+|.|. ......+++.+.
T Consensus 117 ~~~~KVvIIDEa~~Ls----~~a~naLLK~LE 144 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS----NSAFNALLKTIE 144 (563)
T ss_pred cCCCEEEEEEChhhcC----HHHHHHHHHhhc
Confidence 4677899999999874 334555666654
No 496
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.27 E-value=2.5 Score=45.17 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCC--CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 275 SEVLQHIEDRNVS--CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 275 ~~L~~~l~~~~~~--l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+++...+++.... =++-.|||+||+|-- -...+..|+..+.
T Consensus 370 ~kI~~avq~~s~l~adsrP~CLViDEIDGa----~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 370 EKIENAVQNHSVLDADSRPVCLVIDEIDGA----PRAAVDVILSLVK 412 (877)
T ss_pred HHHHHHHhhccccccCCCcceEEEecccCC----cHHHHHHHHHHHH
Confidence 3445555554432 156789999999932 3444555555554
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.19 E-value=1.1 Score=46.42 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=28.3
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhCC-C-cEEEEcCCCCchHHHHHHHHHHHH
Q 015946 155 AVEKMGLFVPSEIQCVGIPAVLNG-K-SVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 155 ~l~~~g~~~~~~iQ~~ai~~i~~g-~-dvlv~apTGsGKTl~~~lpil~~l 203 (397)
.|.++|| .+-|...|..+... + -++++||||||||.... .++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~-a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY-AALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHhcc
Confidence 3445565 45566666655543 3 47899999999997642 234444
No 498
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.16 E-value=2.7 Score=46.40 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.++++||||+|||...
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999654
No 499
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.04 E-value=2.3 Score=47.18 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
.++|+.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999998754
No 500
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=86.98 E-value=0.44 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.4
Q ss_pred EEcCCCCchHHHHHHHHHHHHHh
Q 015946 183 LSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 183 v~apTGsGKTl~~~lpil~~l~~ 205 (397)
|.||.|||||. |+-.+-+.+..
T Consensus 1 ViGpaGSGKTT-~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTT-FCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHH-HHHHHHHHHTT
T ss_pred CCCCCCCCHHH-HHHHHHHHHHh
Confidence 57999999995 44455555543
Done!