Query 015946
Match_columns 397
No_of_seqs 326 out of 2181
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 4.6E-39 1.6E-43 299.1 21.2 209 135-353 23-232 (242)
2 3iuy_A Probable ATP-dependent 100.0 7E-38 2.4E-42 288.1 19.5 211 133-353 11-223 (228)
3 3ber_A Probable ATP-dependent 100.0 1.1E-37 3.7E-42 291.5 20.8 202 137-353 39-242 (249)
4 3fmo_B ATP-dependent RNA helic 100.0 4.4E-38 1.5E-42 302.1 17.3 200 136-353 87-292 (300)
5 2db3_A ATP-dependent RNA helic 100.0 7.5E-37 2.5E-41 308.0 26.1 209 135-351 50-259 (434)
6 1vec_A ATP-dependent RNA helic 100.0 5.5E-37 1.9E-41 277.2 22.0 198 141-353 3-202 (206)
7 1q0u_A Bstdead; DEAD protein, 100.0 1.7E-37 5.9E-42 283.9 17.3 199 140-353 3-206 (219)
8 2oxc_A Probable ATP-dependent 100.0 6.4E-37 2.2E-41 282.5 20.4 202 135-352 18-222 (230)
9 3bor_A Human initiation factor 100.0 3.1E-37 1E-41 286.0 18.3 203 136-353 25-229 (237)
10 2pl3_A Probable ATP-dependent 100.0 1.2E-36 4.2E-41 281.2 22.0 207 135-353 19-227 (236)
11 3ly5_A ATP-dependent RNA helic 100.0 6.8E-37 2.3E-41 288.2 19.2 203 140-353 51-257 (262)
12 1qde_A EIF4A, translation init 100.0 1.2E-36 4E-41 278.8 19.9 202 136-353 9-211 (224)
13 1wrb_A DJVLGB; RNA helicase, D 100.0 6.2E-37 2.1E-41 286.3 17.2 211 139-353 21-234 (253)
14 2gxq_A Heat resistant RNA depe 100.0 4.5E-36 1.5E-40 271.2 20.0 198 142-353 2-200 (207)
15 1t6n_A Probable ATP-dependent 100.0 1.7E-35 5.6E-40 270.6 20.2 199 140-353 13-215 (220)
16 3dkp_A Probable ATP-dependent 100.0 7.3E-36 2.5E-40 277.5 16.0 206 135-353 19-235 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 7.8E-34 2.7E-38 282.7 25.4 213 135-351 9-233 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 1.6E-33 5.3E-38 280.3 20.6 197 139-350 35-232 (410)
19 3eiq_A Eukaryotic initiation f 100.0 4.3E-32 1.5E-36 269.6 22.7 200 137-351 36-237 (414)
20 1s2m_A Putative ATP-dependent 100.0 4.3E-32 1.5E-36 268.9 21.7 189 139-342 19-207 (400)
21 1xti_A Probable ATP-dependent 100.0 3.4E-31 1.2E-35 261.2 22.5 196 141-351 8-207 (391)
22 1fuu_A Yeast initiation factor 100.0 1.1E-31 3.8E-36 264.7 18.3 197 138-350 18-215 (394)
23 3sqw_A ATP-dependent RNA helic 100.0 9.2E-32 3.1E-36 280.2 18.4 207 142-352 18-237 (579)
24 3fmp_B ATP-dependent RNA helic 100.0 7.5E-32 2.6E-36 274.3 15.2 197 138-352 89-291 (479)
25 3i5x_A ATP-dependent RNA helic 100.0 2.9E-31 9.9E-36 275.2 19.2 201 148-352 79-288 (563)
26 3fht_A ATP-dependent RNA helic 100.0 9.3E-31 3.2E-35 259.6 21.7 201 133-351 17-223 (412)
27 3pey_A ATP-dependent RNA helic 100.0 1.4E-30 4.8E-35 256.4 21.4 194 139-351 3-200 (395)
28 1hv8_A Putative ATP-dependent 100.0 1.5E-30 5E-35 253.8 21.1 193 140-349 5-199 (367)
29 2z0m_A 337AA long hypothetical 100.0 2E-29 6.8E-34 243.1 20.5 173 148-342 1-173 (337)
30 3l9o_A ATP-dependent RNA helic 100.0 6.1E-30 2.1E-34 282.7 15.7 183 140-351 161-343 (1108)
31 2zj8_A DNA helicase, putative 100.0 4.4E-29 1.5E-33 266.3 17.2 190 142-352 2-192 (720)
32 2va8_A SSO2462, SKI2-type heli 100.0 1.3E-28 4.3E-33 262.6 19.1 191 140-352 7-198 (715)
33 2p6r_A Afuhel308 helicase; pro 100.0 3.4E-29 1.2E-33 266.5 12.2 192 142-352 2-195 (702)
34 3oiy_A Reverse gyrase helicase 100.0 1.8E-28 6.2E-33 244.6 15.9 187 151-351 9-218 (414)
35 2v1x_A ATP-dependent DNA helic 100.0 7.9E-28 2.7E-32 250.6 19.0 190 139-352 19-225 (591)
36 3fho_A ATP-dependent RNA helic 99.9 7.6E-28 2.6E-32 246.9 14.5 195 139-352 117-315 (508)
37 1oyw_A RECQ helicase, ATP-depe 99.9 2.7E-27 9.3E-32 243.6 15.9 189 141-352 2-199 (523)
38 4a2p_A RIG-I, retinoic acid in 99.9 1.2E-26 4.1E-31 239.0 19.6 182 159-348 3-187 (556)
39 3tbk_A RIG-I helicase domain; 99.9 7.1E-26 2.4E-30 232.8 19.5 172 163-342 4-177 (555)
40 2ykg_A Probable ATP-dependent 99.9 7.8E-26 2.7E-30 239.9 19.3 181 153-341 3-185 (696)
41 4ddu_A Reverse gyrase; topoiso 99.9 6.4E-26 2.2E-30 250.6 18.3 186 152-351 67-275 (1104)
42 4f92_B U5 small nuclear ribonu 99.9 8.3E-26 2.8E-30 258.1 19.7 193 148-353 911-1107(1724)
43 4f92_B U5 small nuclear ribonu 99.9 4.3E-26 1.5E-30 260.4 17.3 188 160-352 76-267 (1724)
44 3b6e_A Interferon-induced heli 99.9 1.3E-25 4.3E-30 203.4 15.2 175 159-338 29-216 (216)
45 2xgj_A ATP-dependent RNA helic 99.9 2.7E-25 9.3E-30 243.6 19.7 166 156-351 80-245 (1010)
46 4a2q_A RIG-I, retinoic acid in 99.9 3.1E-25 1.1E-29 239.2 19.6 176 158-341 243-419 (797)
47 4a4z_A Antiviral helicase SKI2 99.9 2E-25 7E-30 244.5 17.6 167 158-352 35-201 (997)
48 3llm_A ATP-dependent RNA helic 99.9 1.6E-25 5.5E-30 206.9 13.9 184 148-354 46-232 (235)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 1.3E-25 4.5E-30 247.7 15.3 179 153-350 47-236 (1054)
50 1tf5_A Preprotein translocase 99.9 1.7E-25 6E-30 235.8 12.6 169 158-341 79-288 (844)
51 4a2w_A RIG-I, retinoic acid in 99.9 3.2E-24 1.1E-28 234.6 16.2 177 157-341 242-419 (936)
52 2fsf_A Preprotein translocase 99.9 4.1E-24 1.4E-28 225.0 14.2 146 159-319 71-239 (853)
53 1nkt_A Preprotein translocase 99.9 1.2E-23 4E-28 221.9 14.3 170 158-342 107-317 (922)
54 1wp9_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 200.0 21.2 161 163-342 9-169 (494)
55 4gl2_A Interferon-induced heli 99.9 2.5E-23 8.7E-28 220.7 11.1 175 163-342 7-194 (699)
56 1rif_A DAR protein, DNA helica 99.9 1E-22 3.4E-27 193.1 13.9 154 163-343 113-266 (282)
57 1gm5_A RECG; helicase, replica 99.9 3.8E-22 1.3E-26 212.9 16.5 164 150-342 356-529 (780)
58 2oca_A DAR protein, ATP-depend 99.9 1.1E-21 3.9E-26 200.6 13.2 155 161-342 111-265 (510)
59 2jlq_A Serine protease subunit 99.9 6.4E-22 2.2E-26 200.0 9.3 153 160-342 1-154 (451)
60 2eyq_A TRCF, transcription-rep 99.8 6.6E-20 2.3E-24 203.7 24.3 168 146-342 586-764 (1151)
61 2whx_A Serine protease/ntpase/ 99.8 5.3E-22 1.8E-26 207.5 5.2 170 143-342 151-321 (618)
62 2ipc_A Preprotein translocase 99.8 1E-20 3.6E-25 199.0 13.3 130 159-303 76-215 (997)
63 2fwr_A DNA repair protein RAD2 99.8 9.5E-20 3.2E-24 184.6 16.1 138 163-342 93-231 (472)
64 2fz4_A DNA repair protein RAD2 99.8 2.9E-19 1E-23 165.3 17.1 139 162-342 92-231 (237)
65 3o8b_A HCV NS3 protease/helica 99.8 8E-21 2.7E-25 198.2 6.7 147 163-342 217-363 (666)
66 2xau_A PRE-mRNA-splicing facto 99.8 7E-20 2.4E-24 196.0 13.4 192 139-353 70-263 (773)
67 2wv9_A Flavivirin protease NS2 99.8 2.9E-21 9.8E-26 203.5 -1.7 159 155-342 202-376 (673)
68 1yks_A Genome polyprotein [con 99.8 4.4E-20 1.5E-24 185.9 4.2 132 174-342 4-143 (440)
69 3h1t_A Type I site-specific re 99.8 2.2E-18 7.4E-23 179.6 12.6 157 163-342 178-344 (590)
70 2v6i_A RNA helicase; membrane, 99.8 3.3E-18 1.1E-22 171.8 13.2 137 177-342 1-137 (431)
71 2z83_A Helicase/nucleoside tri 99.8 2.8E-18 9.7E-23 173.6 11.8 141 173-342 16-156 (459)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 2.3E-17 8E-22 180.4 14.2 167 150-342 251-441 (1038)
73 3crv_A XPD/RAD3 related DNA he 99.7 9.9E-17 3.4E-21 165.9 13.2 131 160-304 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 2.5E-17 8.5E-22 173.3 6.2 140 173-347 150-289 (677)
75 1z63_A Helicase of the SNF2/RA 99.6 1E-14 3.6E-19 148.5 12.9 150 163-342 37-190 (500)
76 2vl7_A XPD; helicase, unknown 99.6 1.9E-15 6.3E-20 155.9 7.3 128 159-304 4-189 (540)
77 3dmq_A RNA polymerase-associat 99.5 9.2E-14 3.2E-18 152.3 11.1 161 162-341 152-318 (968)
78 1z3i_X Similar to RAD54-like; 99.4 2.9E-12 9.9E-17 134.8 17.8 162 163-342 55-233 (644)
79 3mwy_W Chromo domain-containin 99.4 1.9E-12 6.6E-17 139.3 13.9 157 163-342 236-408 (800)
80 4a15_A XPD helicase, ATP-depen 99.4 1.5E-12 5E-17 136.2 11.0 80 163-251 3-86 (620)
81 3jux_A Protein translocase sub 99.2 6.3E-11 2.1E-15 123.2 13.3 131 158-303 71-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.1 2.3E-10 7.8E-15 119.4 10.7 143 165-336 151-296 (608)
83 3upu_A ATP-dependent DNA helic 98.2 7.5E-06 2.6E-10 82.3 12.5 70 157-235 19-93 (459)
84 3e1s_A Exodeoxyribonuclease V, 98.2 8.1E-06 2.8E-10 84.3 13.0 62 163-234 189-250 (574)
85 2gk6_A Regulator of nonsense t 98.1 1.5E-05 5.1E-10 83.3 12.8 70 161-239 178-247 (624)
86 2xzl_A ATP-dependent helicase 98.1 4.3E-05 1.5E-09 81.9 15.7 70 161-239 358-427 (802)
87 4b3f_X DNA-binding protein smu 98.1 8.8E-06 3E-10 85.3 10.1 67 163-239 189-256 (646)
88 2wjy_A Regulator of nonsense t 98.0 6.2E-05 2.1E-09 80.6 15.1 69 161-238 354-422 (800)
89 2o0j_A Terminase, DNA packagin 97.7 0.00069 2.4E-08 66.3 14.5 72 163-242 163-234 (385)
90 3ec2_A DNA replication protein 97.5 0.00095 3.2E-08 57.6 11.6 20 177-196 37-56 (180)
91 3cpe_A Terminase, DNA packagin 97.4 0.00074 2.5E-08 69.9 11.6 73 163-243 163-235 (592)
92 2kjq_A DNAA-related protein; s 97.1 0.002 6.9E-08 54.2 8.5 19 177-195 35-53 (149)
93 1c4o_A DNA nucleotide excision 97.0 0.0013 4.5E-08 69.0 8.8 68 160-241 6-78 (664)
94 3te6_A Regulatory protein SIR3 96.9 0.0073 2.5E-07 57.4 11.4 47 289-343 131-177 (318)
95 3lfu_A DNA helicase II; SF1 he 96.8 0.0027 9.3E-08 66.0 8.8 71 162-240 8-78 (647)
96 2orw_A Thymidine kinase; TMTK, 96.7 0.0077 2.6E-07 52.5 9.3 40 177-226 2-41 (184)
97 2b8t_A Thymidine kinase; deoxy 96.6 0.008 2.7E-07 54.2 9.2 91 177-302 11-101 (223)
98 3vkw_A Replicase large subunit 96.6 0.0081 2.8E-07 59.6 9.7 87 180-306 163-249 (446)
99 1uaa_A REP helicase, protein ( 96.4 0.0051 1.8E-07 64.5 7.3 70 163-240 2-71 (673)
100 1xx6_A Thymidine kinase; NESG, 96.3 0.014 4.9E-07 51.1 9.0 40 177-226 7-46 (191)
101 2r6a_A DNAB helicase, replicat 96.2 0.059 2E-06 53.6 13.9 144 177-337 202-362 (454)
102 1pjr_A PCRA; DNA repair, DNA r 96.2 0.011 3.9E-07 62.5 8.7 70 162-239 10-79 (724)
103 3bos_A Putative DNA replicatio 96.1 0.014 4.8E-07 51.9 7.9 19 177-195 51-69 (242)
104 3h4m_A Proteasome-activating n 96.1 0.017 5.9E-07 53.3 8.5 53 140-195 13-68 (285)
105 3e2i_A Thymidine kinase; Zn-bi 96.1 0.027 9.2E-07 50.3 9.2 99 177-315 27-125 (219)
106 1l8q_A Chromosomal replication 96.0 0.054 1.8E-06 51.0 11.9 18 178-195 37-54 (324)
107 2j9r_A Thymidine kinase; TK1, 96.0 0.027 9.1E-07 50.3 9.0 40 178-227 28-67 (214)
108 2z4s_A Chromosomal replication 96.0 0.046 1.6E-06 54.3 11.7 19 178-196 130-148 (440)
109 3syl_A Protein CBBX; photosynt 96.0 0.019 6.5E-07 53.6 8.4 18 178-195 67-84 (309)
110 2chg_A Replication factor C sm 95.9 0.095 3.2E-06 45.4 12.4 17 179-195 39-55 (226)
111 2v1u_A Cell division control p 95.9 0.028 9.7E-07 53.8 9.6 20 177-196 43-62 (387)
112 3vfd_A Spastin; ATPase, microt 95.8 0.13 4.5E-06 49.8 14.1 53 140-195 111-165 (389)
113 2q6t_A DNAB replication FORK h 95.8 0.06 2E-06 53.4 11.8 144 177-337 199-361 (444)
114 2zpa_A Uncharacterized protein 95.7 0.025 8.7E-07 58.8 8.6 115 163-342 175-291 (671)
115 1w4r_A Thymidine kinase; type 95.6 0.074 2.5E-06 46.7 10.1 39 177-225 19-57 (195)
116 1d2n_A N-ethylmaleimide-sensit 95.6 0.091 3.1E-06 48.1 11.2 18 179-196 65-82 (272)
117 2d7d_A Uvrabc system protein B 95.5 0.024 8.2E-07 59.3 7.9 66 163-241 12-82 (661)
118 2orv_A Thymidine kinase; TP4A 95.5 0.045 1.5E-06 49.4 8.5 41 177-227 18-58 (234)
119 1cr0_A DNA primase/helicase; R 95.4 0.087 3E-06 48.9 10.4 62 273-338 131-196 (296)
120 4a1f_A DNAB helicase, replicat 95.3 0.026 8.8E-07 54.1 6.8 145 177-338 45-205 (338)
121 3kl4_A SRP54, signal recogniti 95.3 0.14 4.8E-06 50.6 12.2 131 179-350 98-235 (433)
122 1fnn_A CDC6P, cell division co 95.3 0.047 1.6E-06 52.4 8.7 16 180-195 46-61 (389)
123 3u61_B DNA polymerase accessor 95.3 0.05 1.7E-06 51.2 8.7 15 289-303 104-118 (324)
124 1njg_A DNA polymerase III subu 95.3 0.25 8.5E-06 43.2 12.8 16 180-195 47-62 (250)
125 3u4q_A ATP-dependent helicase/ 95.3 0.025 8.5E-07 63.5 7.3 70 163-238 10-79 (1232)
126 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.13 4.4E-06 46.4 10.7 52 141-195 3-56 (262)
127 1a5t_A Delta prime, HOLB; zinc 95.1 0.073 2.5E-06 50.6 9.3 33 164-196 3-42 (334)
128 2dr3_A UPF0273 protein PH0284; 95.1 0.43 1.5E-05 42.3 13.9 50 177-237 22-71 (247)
129 3eie_A Vacuolar protein sortin 95.0 0.17 5.7E-06 47.7 11.4 50 140-195 14-68 (322)
130 1sxj_E Activator 1 40 kDa subu 95.0 0.17 5.7E-06 48.0 11.4 43 141-195 11-53 (354)
131 2qby_B CDC6 homolog 3, cell di 95.0 0.045 1.5E-06 52.5 7.4 18 178-195 45-62 (384)
132 2w58_A DNAI, primosome compone 95.0 0.18 6E-06 43.7 10.6 17 179-195 55-71 (202)
133 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.16 5.5E-06 48.0 10.8 50 140-195 8-62 (322)
134 2p65_A Hypothetical protein PF 94.8 0.16 5.4E-06 42.8 9.7 19 178-196 43-61 (187)
135 3pfi_A Holliday junction ATP-d 94.7 0.14 4.8E-06 48.3 10.1 42 142-195 27-72 (338)
136 2hjv_A ATP-dependent RNA helic 94.7 0.33 1.1E-05 40.7 11.4 74 216-299 35-112 (163)
137 2qgz_A Helicase loader, putati 94.7 0.14 4.8E-06 48.2 9.8 19 178-196 152-170 (308)
138 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.13 4.3E-06 45.3 8.8 21 177-197 22-42 (235)
139 4b4t_J 26S protease regulatory 94.5 0.15 5E-06 49.9 9.6 54 139-195 143-199 (405)
140 2qby_A CDC6 homolog 1, cell di 94.3 0.097 3.3E-06 49.8 7.9 19 178-196 45-63 (386)
141 1sxj_A Activator 1 95 kDa subu 94.3 0.077 2.6E-06 53.7 7.4 44 289-340 147-190 (516)
142 3bh0_A DNAB-like replicative h 94.2 0.3 1E-05 46.0 11.0 144 176-337 66-229 (315)
143 2p6n_A ATP-dependent RNA helic 94.1 0.51 1.7E-05 40.9 11.4 73 216-298 54-130 (191)
144 3eaq_A Heat resistant RNA depe 94.0 0.42 1.5E-05 42.0 10.9 71 216-296 31-105 (212)
145 1sxj_D Activator 1 41 kDa subu 94.0 0.35 1.2E-05 45.6 11.0 17 179-195 59-75 (353)
146 1fuk_A Eukaryotic initiation f 94.0 0.52 1.8E-05 39.5 11.0 74 216-299 30-107 (165)
147 2rb4_A ATP-dependent RNA helic 93.9 0.34 1.1E-05 41.1 9.8 73 216-298 34-110 (175)
148 1nlf_A Regulatory protein REPA 93.8 0.75 2.6E-05 42.1 12.6 25 175-199 27-51 (279)
149 2l8b_A Protein TRAI, DNA helic 93.8 0.38 1.3E-05 41.6 9.6 121 165-338 36-158 (189)
150 1iqp_A RFCS; clamp loader, ext 93.7 0.42 1.4E-05 44.3 10.9 16 180-195 48-63 (327)
151 2cvh_A DNA repair and recombin 93.6 0.97 3.3E-05 39.2 12.5 23 177-199 19-41 (220)
152 3pvs_A Replication-associated 93.5 0.14 4.7E-06 50.9 7.4 18 179-196 51-68 (447)
153 2z43_A DNA repair and recombin 93.3 0.72 2.4E-05 43.4 11.8 136 177-338 106-257 (324)
154 1hqc_A RUVB; extended AAA-ATPa 93.1 0.3 1E-05 45.5 8.8 18 178-195 38-55 (324)
155 3dm5_A SRP54, signal recogniti 93.0 1.6 5.6E-05 43.1 14.1 59 179-250 101-161 (443)
156 2zan_A Vacuolar protein sortin 92.9 0.23 7.7E-06 49.2 7.9 54 139-195 129-184 (444)
157 1n0w_A DNA repair protein RAD5 92.8 0.62 2.1E-05 41.2 10.1 23 177-199 23-45 (243)
158 1t5i_A C_terminal domain of A 92.8 2.5 8.7E-05 35.5 13.5 73 216-298 31-107 (172)
159 1sxj_B Activator 1 37 kDa subu 92.7 0.54 1.9E-05 43.5 10.0 16 180-195 44-59 (323)
160 3bgw_A DNAB-like replicative h 92.7 0.55 1.9E-05 46.5 10.4 144 177-338 196-359 (444)
161 2qp9_X Vacuolar protein sortin 92.6 0.55 1.9E-05 44.9 10.0 50 140-195 47-101 (355)
162 3i5x_A ATP-dependent RNA helic 92.5 1.6 5.4E-05 44.0 13.9 78 215-299 338-419 (563)
163 1xp8_A RECA protein, recombina 92.3 0.72 2.5E-05 44.5 10.4 40 177-226 73-112 (366)
164 2ehv_A Hypothetical protein PH 92.3 0.18 6.1E-06 45.0 5.7 45 289-340 134-183 (251)
165 2zts_A Putative uncharacterize 91.9 0.14 4.8E-06 45.7 4.5 51 177-237 29-79 (251)
166 3hjh_A Transcription-repair-co 91.7 0.83 2.8E-05 45.7 10.4 52 177-241 13-64 (483)
167 2i1q_A DNA repair and recombin 91.6 0.48 1.6E-05 44.5 8.2 20 178-197 98-117 (322)
168 3lda_A DNA repair protein RAD5 91.6 1.5 5E-05 42.8 11.8 26 137-162 80-105 (400)
169 1q57_A DNA primase/helicase; d 91.5 0.99 3.4E-05 45.2 10.8 146 176-338 240-403 (503)
170 2zr9_A Protein RECA, recombina 91.3 0.48 1.7E-05 45.3 7.9 39 177-225 60-98 (349)
171 2gno_A DNA polymerase III, gam 91.3 1.9 6.6E-05 40.2 11.9 27 289-319 81-107 (305)
172 3sqw_A ATP-dependent RNA helic 91.3 2.6 8.8E-05 42.9 13.9 79 215-300 287-369 (579)
173 3m6a_A ATP-dependent protease 91.2 0.27 9.4E-06 50.0 6.4 19 177-195 107-125 (543)
174 3i32_A Heat resistant RNA depe 91.2 1 3.5E-05 42.1 9.8 71 216-296 28-102 (300)
175 2d7d_A Uvrabc system protein B 91.1 2 7E-05 44.6 13.0 92 215-319 444-539 (661)
176 1jr3_A DNA polymerase III subu 91.0 1.7 5.7E-05 41.1 11.4 16 180-195 40-55 (373)
177 1sxj_C Activator 1 40 kDa subu 90.7 1.5 5.1E-05 41.3 10.6 17 180-196 48-64 (340)
178 2eyq_A TRCF, transcription-rep 90.3 3.1 0.00011 46.2 14.2 79 215-301 811-893 (1151)
179 2db3_A ATP-dependent RNA helic 90.3 1.9 6.4E-05 42.2 11.4 69 218-296 302-374 (434)
180 2fna_A Conserved hypothetical 90.3 8.8 0.0003 35.4 15.7 17 179-195 31-47 (357)
181 2i4i_A ATP-dependent RNA helic 90.1 1.2 4.2E-05 42.6 9.7 72 215-296 275-350 (417)
182 2jgn_A DBX, DDX3, ATP-dependen 90.0 0.59 2E-05 40.2 6.6 72 215-296 45-120 (185)
183 1w5s_A Origin recognition comp 90.0 1 3.5E-05 43.2 9.1 18 179-196 51-70 (412)
184 1v5w_A DMC1, meiotic recombina 89.6 0.66 2.2E-05 44.2 7.1 58 177-238 121-179 (343)
185 4a74_A DNA repair and recombin 89.5 1.5 5.1E-05 38.2 9.0 21 177-197 24-44 (231)
186 1g5t_A COB(I)alamin adenosyltr 89.3 1.9 6.6E-05 37.6 9.3 35 179-223 29-63 (196)
187 1pzn_A RAD51, DNA repair and r 89.2 2.4 8.3E-05 40.3 10.9 21 177-197 130-150 (349)
188 3fht_A ATP-dependent RNA helic 89.1 1.7 5.8E-05 41.5 9.8 72 216-297 266-341 (412)
189 3co5_A Putative two-component 89.1 0.32 1.1E-05 39.9 3.9 21 175-195 24-44 (143)
190 2v6i_A RNA helicase; membrane, 89.1 1.2 4.1E-05 43.7 8.8 68 216-294 171-238 (431)
191 1oyw_A RECQ helicase, ATP-depe 88.9 2.2 7.6E-05 42.9 10.8 73 215-297 235-311 (523)
192 2vhj_A Ntpase P4, P4; non- hyd 88.9 0.86 3E-05 43.2 7.2 21 177-197 122-142 (331)
193 3hr8_A Protein RECA; alpha and 88.9 1.7 5.7E-05 41.7 9.4 42 177-228 60-101 (356)
194 1vma_A Cell division protein F 88.6 13 0.00045 34.5 15.3 20 178-197 104-123 (306)
195 3pey_A ATP-dependent RNA helic 88.5 2.2 7.6E-05 40.2 10.1 77 215-301 242-322 (395)
196 1yks_A Genome polyprotein [con 88.5 1.1 3.9E-05 44.0 8.2 69 216-295 177-245 (440)
197 3n70_A Transport activator; si 88.3 0.37 1.3E-05 39.6 3.8 20 176-195 22-41 (145)
198 2j0s_A ATP-dependent RNA helic 88.2 3.3 0.00011 39.6 11.2 72 216-297 276-351 (410)
199 1s2m_A Putative ATP-dependent 88.0 3.1 0.0001 39.6 10.8 72 216-297 258-333 (400)
200 1e9r_A Conjugal transfer prote 87.7 0.56 1.9E-05 46.0 5.4 26 177-203 52-77 (437)
201 1xti_A Probable ATP-dependent 87.6 2 6.9E-05 40.6 9.2 76 215-300 249-328 (391)
202 2v1x_A ATP-dependent DNA helic 87.3 1.9 6.5E-05 44.2 9.3 72 215-296 266-341 (591)
203 1c4o_A DNA nucleotide excision 87.1 5.7 0.0002 41.2 12.9 93 215-320 438-534 (664)
204 1hv8_A Putative ATP-dependent 87.1 2 6.8E-05 40.1 8.7 74 215-298 237-314 (367)
205 3cmu_A Protein RECA, recombina 87.0 0.5 1.7E-05 55.0 5.0 41 178-228 1427-1467(2050)
206 1qvr_A CLPB protein; coiled co 86.4 1.4 4.6E-05 47.4 7.8 19 178-196 191-209 (854)
207 3io5_A Recombination and repai 85.9 5.6 0.00019 37.5 10.8 90 180-303 30-124 (333)
208 3e70_C DPA, signal recognition 85.7 8.4 0.00029 36.3 12.2 20 177-196 128-147 (328)
209 2px0_A Flagellar biosynthesis 85.7 1.1 3.6E-05 41.8 5.8 23 177-199 104-126 (296)
210 4b4t_M 26S protease regulatory 85.3 0.22 7.5E-06 49.2 0.9 55 138-195 175-232 (434)
211 3pxi_A Negative regulator of g 85.2 2.1 7.2E-05 45.2 8.5 17 180-196 523-539 (758)
212 2oap_1 GSPE-2, type II secreti 84.5 1.2 4.1E-05 44.9 5.9 41 153-195 236-277 (511)
213 1wp9_A ATP-dependent RNA helic 84.1 5.5 0.00019 38.3 10.5 76 215-300 360-447 (494)
214 3cf0_A Transitional endoplasmi 83.8 0.27 9.2E-06 45.8 0.7 54 139-195 10-66 (301)
215 2yhs_A FTSY, cell division pro 83.3 10 0.00034 38.0 11.9 19 179-197 294-312 (503)
216 2yjt_D ATP-dependent RNA helic 82.7 0.28 9.6E-06 41.5 0.0 73 216-298 30-106 (170)
217 3b85_A Phosphate starvation-in 81.5 1.7 5.9E-05 38.1 5.1 36 161-196 5-40 (208)
218 4b4t_H 26S protease regulatory 81.0 0.46 1.6E-05 47.2 1.2 54 139-195 204-260 (467)
219 4ag6_A VIRB4 ATPase, type IV s 80.9 1.6 5.3E-05 42.1 5.0 46 290-342 262-310 (392)
220 4b4t_L 26S protease subunit RP 80.4 0.41 1.4E-05 47.3 0.6 55 138-195 175-232 (437)
221 1jbk_A CLPB protein; beta barr 80.4 1.5 5.2E-05 36.5 4.2 18 178-195 43-60 (195)
222 2wv9_A Flavivirin protease NS2 80.4 3.4 0.00012 43.0 7.7 69 216-295 410-478 (673)
223 3tbk_A RIG-I helicase domain; 80.1 6.3 0.00022 39.0 9.4 78 215-298 388-478 (555)
224 3eiq_A Eukaryotic initiation f 79.9 2.9 0.0001 39.8 6.6 72 216-297 280-355 (414)
225 1zu4_A FTSY; GTPase, signal re 79.8 7.4 0.00025 36.5 9.2 20 178-197 105-124 (320)
226 3cmw_A Protein RECA, recombina 79.7 3.7 0.00013 47.2 8.1 92 178-305 1431-1524(1706)
227 4b4t_K 26S protease regulatory 79.6 0.49 1.7E-05 46.7 0.9 54 139-195 167-223 (428)
228 1u0j_A DNA replication protein 79.4 3.9 0.00013 37.4 6.9 43 151-196 74-122 (267)
229 1kgd_A CASK, peripheral plasma 79.4 0.88 3E-05 38.7 2.4 21 176-196 3-23 (180)
230 2gza_A Type IV secretion syste 79.3 1.3 4.3E-05 42.5 3.7 22 174-195 171-192 (361)
231 2ffh_A Protein (FFH); SRP54, s 79.3 5.5 0.00019 39.0 8.3 20 178-197 98-117 (425)
232 2oca_A DAR protein, ATP-depend 79.2 12 0.00042 36.8 11.2 76 216-300 347-426 (510)
233 2z0m_A 337AA long hypothetical 79.1 4.9 0.00017 36.9 7.7 71 215-299 219-293 (337)
234 2xxa_A Signal recognition part 79.1 5 0.00017 39.4 8.0 21 179-199 101-121 (433)
235 3hws_A ATP-dependent CLP prote 79.0 2.6 9.1E-05 40.0 5.9 19 177-195 50-68 (363)
236 2x8a_A Nuclear valosin-contain 79.0 0.34 1.2E-05 44.6 -0.4 54 139-195 5-61 (274)
237 2jlq_A Serine protease subunit 78.9 4.6 0.00016 39.7 7.7 69 216-295 188-256 (451)
238 3nbx_X ATPase RAVA; AAA+ ATPas 78.8 2.5 8.7E-05 42.4 5.9 31 165-195 28-58 (500)
239 3cmw_A Protein RECA, recombina 78.6 5 0.00017 46.1 8.8 38 177-224 731-768 (1706)
240 2xau_A PRE-mRNA-splicing facto 78.5 9.6 0.00033 40.3 10.5 75 216-296 303-393 (773)
241 2r44_A Uncharacterized protein 78.1 1.1 3.7E-05 42.0 2.7 25 171-195 39-63 (331)
242 2bjv_A PSP operon transcriptio 78.1 1.6 5.5E-05 39.3 3.8 19 177-195 28-46 (265)
243 2whx_A Serine protease/ntpase/ 77.2 6.1 0.00021 40.7 8.4 69 216-295 355-423 (618)
244 2eyu_A Twitching motility prot 77.2 1.1 3.6E-05 41.0 2.3 22 175-196 22-43 (261)
245 1lvg_A Guanylate kinase, GMP k 76.9 1.2 4E-05 38.6 2.5 20 177-196 3-22 (198)
246 1ofh_A ATP-dependent HSL prote 76.6 4.7 0.00016 36.7 6.7 19 177-195 49-67 (310)
247 3vaa_A Shikimate kinase, SK; s 76.2 1.3 4.5E-05 38.1 2.6 21 176-196 23-43 (199)
248 2z83_A Helicase/nucleoside tri 76.1 5.2 0.00018 39.4 7.3 69 216-295 190-258 (459)
249 3nwn_A Kinesin-like protein KI 76.1 1.9 6.6E-05 41.3 3.9 25 171-195 96-122 (359)
250 1j8m_F SRP54, signal recogniti 76.0 7.2 0.00024 36.1 7.8 20 178-197 98-117 (297)
251 3rc3_A ATP-dependent RNA helic 75.9 11 0.00039 39.1 10.0 75 217-302 321-401 (677)
252 2pt7_A CAG-ALFA; ATPase, prote 75.9 1.5 5E-05 41.6 3.0 20 175-194 168-187 (330)
253 4b4t_I 26S protease regulatory 75.3 0.64 2.2E-05 45.8 0.3 54 139-195 177-233 (437)
254 1p9r_A General secretion pathw 75.1 2.7 9.2E-05 41.2 4.8 19 177-195 166-184 (418)
255 1tue_A Replication protein E1; 75.1 3.3 0.00011 36.5 4.9 43 151-195 29-75 (212)
256 1bg2_A Kinesin; motor protein, 74.9 2.3 7.7E-05 40.2 4.0 25 171-195 69-95 (325)
257 3mm4_A Histidine kinase homolo 74.7 31 0.0011 29.3 11.2 144 175-350 17-172 (206)
258 3tau_A Guanylate kinase, GMP k 74.6 2 6.7E-05 37.4 3.3 20 177-196 7-26 (208)
259 2j41_A Guanylate kinase; GMP, 74.3 1.5 5.1E-05 37.6 2.4 20 176-195 4-23 (207)
260 4etp_A Kinesin-like protein KA 74.2 2.2 7.6E-05 41.6 3.8 25 171-195 132-158 (403)
261 2qor_A Guanylate kinase; phosp 74.1 1.3 4.3E-05 38.4 1.9 21 175-195 9-29 (204)
262 3dc4_A Kinesin-like protein NO 74.1 2.1 7.1E-05 40.8 3.5 24 172-195 87-112 (344)
263 3b9p_A CG5977-PA, isoform A; A 73.8 1.5 5.1E-05 40.2 2.4 53 140-195 17-71 (297)
264 1ls1_A Signal recognition part 73.7 39 0.0013 30.9 12.2 21 177-197 97-117 (295)
265 1v8k_A Kinesin-like protein KI 73.7 2.4 8.2E-05 41.4 3.9 26 171-196 146-173 (410)
266 1ixz_A ATP-dependent metallopr 73.6 0.82 2.8E-05 41.0 0.5 54 139-195 11-66 (254)
267 3trf_A Shikimate kinase, SK; a 73.5 1.7 5.7E-05 36.7 2.5 19 178-196 5-23 (185)
268 3cmu_A Protein RECA, recombina 73.5 6.4 0.00022 46.0 7.9 42 177-228 382-423 (2050)
269 2va8_A SSO2462, SKI2-type heli 73.5 16 0.00055 37.9 10.6 77 215-297 251-363 (715)
270 2h58_A Kinesin-like protein KI 73.4 2.6 8.8E-05 39.9 4.0 26 170-195 71-98 (330)
271 2ykg_A Probable ATP-dependent 73.3 5.2 0.00018 41.3 6.8 79 215-299 397-488 (696)
272 2y65_A Kinesin, kinesin heavy 73.3 2.6 8.8E-05 40.5 4.0 24 172-195 77-102 (365)
273 2zfi_A Kinesin-like protein KI 73.2 2.6 8.9E-05 40.5 4.0 25 171-195 81-107 (366)
274 4a14_A Kinesin, kinesin-like p 73.1 2.6 9E-05 40.1 4.0 25 171-195 75-101 (344)
275 2vvg_A Kinesin-2; motor protei 73.1 2.6 9E-05 40.2 4.0 24 172-195 82-107 (350)
276 3b6u_A Kinesin-like protein KI 73.0 2.6 8.7E-05 40.6 3.9 25 171-195 93-119 (372)
277 1t5c_A CENP-E protein, centrom 72.9 2.6 8.9E-05 40.2 3.9 25 171-195 69-95 (349)
278 3gbj_A KIF13B protein; kinesin 72.8 2.6 8.9E-05 40.3 3.9 25 171-195 84-110 (354)
279 3tr0_A Guanylate kinase, GMP k 72.8 1.8 6.2E-05 37.0 2.6 20 177-196 6-25 (205)
280 1goj_A Kinesin, kinesin heavy 72.7 2.6 8.8E-05 40.4 3.8 24 172-195 73-98 (355)
281 1z6g_A Guanylate kinase; struc 72.7 1.9 6.5E-05 37.9 2.7 21 175-195 20-40 (218)
282 3p32_A Probable GTPase RV1496/ 72.6 47 0.0016 31.2 12.8 17 180-196 81-97 (355)
283 2nr8_A Kinesin-like protein KI 72.6 2.7 9.1E-05 40.3 3.9 25 171-195 95-121 (358)
284 1x88_A Kinesin-like protein KI 72.4 2.6 8.8E-05 40.4 3.8 25 171-195 80-106 (359)
285 1qhx_A CPT, protein (chloramph 72.4 1.8 6.3E-05 36.1 2.5 18 178-195 3-20 (178)
286 3lre_A Kinesin-like protein KI 72.3 2.6 9E-05 40.3 3.8 25 171-195 97-123 (355)
287 3u06_A Protein claret segregat 72.2 2.5 8.5E-05 41.3 3.7 26 170-195 129-156 (412)
288 3uk6_A RUVB-like 2; hexameric 72.2 1.7 5.6E-05 41.2 2.4 18 178-195 70-87 (368)
289 3cob_A Kinesin heavy chain-lik 72.0 2.4 8.1E-05 40.8 3.4 25 171-195 71-97 (369)
290 1zp6_A Hypothetical protein AT 71.9 1.6 5.4E-05 37.0 1.9 20 176-195 7-26 (191)
291 4gl2_A Interferon-induced heli 71.9 3.1 0.00011 43.1 4.6 75 216-296 400-488 (699)
292 1ojl_A Transcriptional regulat 71.4 2.5 8.6E-05 39.3 3.4 19 177-195 24-42 (304)
293 3jvv_A Twitching mobility prot 71.4 2.1 7.2E-05 41.0 2.9 20 176-195 121-140 (356)
294 3t0q_A AGR253WP; kinesin, alph 71.4 2.3 8E-05 40.6 3.2 25 171-195 77-103 (349)
295 4akg_A Glutathione S-transfera 71.3 4.7 0.00016 48.6 6.3 47 150-197 892-942 (2695)
296 2p6r_A Afuhel308 helicase; pro 71.1 13 0.00043 38.7 9.1 75 216-296 242-346 (702)
297 3a8t_A Adenylate isopentenyltr 71.1 2.1 7.2E-05 40.7 2.8 19 178-196 40-58 (339)
298 1kag_A SKI, shikimate kinase I 71.0 2.2 7.4E-05 35.5 2.6 18 178-195 4-21 (173)
299 1s96_A Guanylate kinase, GMP k 70.9 2.1 7.2E-05 37.9 2.6 23 174-196 12-34 (219)
300 3ney_A 55 kDa erythrocyte memb 70.8 2.8 9.4E-05 36.6 3.3 21 176-196 17-37 (197)
301 3iij_A Coilin-interacting nucl 70.8 2.3 7.8E-05 35.7 2.7 21 176-196 9-29 (180)
302 2heh_A KIF2C protein; kinesin, 70.7 3 0.0001 40.3 3.8 26 171-196 126-153 (387)
303 3o8b_A HCV NS3 protease/helica 70.7 5.7 0.00019 41.3 6.1 67 215-295 395-461 (666)
304 3lw7_A Adenylate kinase relate 70.7 1.9 6.7E-05 35.4 2.2 16 180-195 3-18 (179)
305 2wbe_C Bipolar kinesin KRP-130 70.6 2.8 9.4E-05 40.4 3.5 24 172-195 93-118 (373)
306 3a00_A Guanylate kinase, GMP k 70.6 2.2 7.5E-05 36.3 2.6 18 178-195 1-18 (186)
307 1lv7_A FTSH; alpha/beta domain 70.6 1.9 6.6E-05 38.6 2.3 53 140-195 8-62 (257)
308 2ewv_A Twitching motility prot 70.4 2.1 7.2E-05 41.1 2.7 21 176-196 134-154 (372)
309 2owm_A Nckin3-434, related to 70.3 3.2 0.00011 40.9 4.0 25 171-195 128-154 (443)
310 3exa_A TRNA delta(2)-isopenten 70.3 2 6.9E-05 40.5 2.4 17 179-195 4-20 (322)
311 1f9v_A Kinesin-like protein KA 70.3 2.2 7.5E-05 40.7 2.7 25 171-195 76-102 (347)
312 3foz_A TRNA delta(2)-isopenten 70.3 2 6.9E-05 40.4 2.4 16 180-195 12-27 (316)
313 4gp7_A Metallophosphoesterase; 70.0 1.9 6.6E-05 36.2 2.0 21 177-197 8-28 (171)
314 1znw_A Guanylate kinase, GMP k 69.9 2.3 7.9E-05 36.8 2.6 22 174-195 16-37 (207)
315 3vkg_A Dynein heavy chain, cyt 69.7 5.5 0.00019 48.6 6.4 47 150-197 875-925 (3245)
316 1y63_A LMAJ004144AAA protein; 69.6 2.2 7.7E-05 36.1 2.4 19 177-195 9-27 (184)
317 2i3b_A HCR-ntpase, human cance 69.6 11 0.00039 32.2 7.0 79 288-388 103-185 (189)
318 2qmh_A HPR kinase/phosphorylas 69.4 2.5 8.7E-05 37.1 2.7 18 177-194 33-50 (205)
319 3bfn_A Kinesin-like protein KI 69.3 2.6 9E-05 40.8 3.1 23 173-195 92-116 (388)
320 2ius_A DNA translocase FTSK; n 69.2 4.5 0.00015 40.7 4.9 27 177-203 166-192 (512)
321 1iy2_A ATP-dependent metallopr 69.1 1.2 4E-05 40.7 0.5 54 139-195 35-90 (278)
322 2ze6_A Isopentenyl transferase 69.0 2.1 7.2E-05 38.6 2.2 16 180-195 3-18 (253)
323 4a2p_A RIG-I, retinoic acid in 68.7 11 0.00036 37.4 7.6 79 215-299 389-480 (556)
324 1ex7_A Guanylate kinase; subst 68.5 2.5 8.5E-05 36.5 2.5 17 179-195 2-18 (186)
325 4eun_A Thermoresistant glucoki 68.4 2.6 8.8E-05 36.2 2.6 20 177-196 28-47 (200)
326 1tf7_A KAIC; homohexamer, hexa 67.9 20 0.00067 35.9 9.4 129 176-339 279-417 (525)
327 3u4q_B ATP-dependent helicase/ 67.6 4.9 0.00017 44.6 5.2 39 182-227 5-43 (1166)
328 3oiy_A Reverse gyrase helicase 67.3 8.8 0.0003 36.7 6.5 72 216-299 252-329 (414)
329 1knq_A Gluconate kinase; ALFA/ 67.2 2.4 8.1E-05 35.4 2.0 20 177-196 7-26 (175)
330 1w36_B RECB, exodeoxyribonucle 66.9 7.7 0.00026 43.1 6.6 59 180-238 18-78 (1180)
331 4fcw_A Chaperone protein CLPB; 66.7 3 0.0001 38.2 2.8 18 179-196 48-65 (311)
332 1kht_A Adenylate kinase; phosp 66.4 2.9 9.9E-05 35.1 2.5 18 178-195 3-20 (192)
333 3t15_A Ribulose bisphosphate c 66.4 2.5 8.5E-05 39.0 2.2 17 179-195 37-53 (293)
334 2iut_A DNA translocase FTSK; n 66.3 5.5 0.00019 40.6 4.9 27 178-204 214-240 (574)
335 1um8_A ATP-dependent CLP prote 66.3 2.9 9.9E-05 39.9 2.7 18 178-195 72-89 (376)
336 2zj8_A DNA helicase, putative 66.1 15 0.00052 38.2 8.4 78 216-300 237-347 (720)
337 2c9o_A RUVB-like 1; hexameric 65.9 2.7 9.2E-05 41.5 2.4 45 140-196 33-81 (456)
338 1ly1_A Polynucleotide kinase; 65.8 2.8 9.5E-05 34.8 2.2 16 180-195 4-19 (181)
339 2rep_A Kinesin-like protein KI 65.7 3.1 0.0001 40.2 2.7 25 171-195 107-133 (376)
340 4a2q_A RIG-I, retinoic acid in 65.5 15 0.0005 38.9 8.2 79 215-299 630-721 (797)
341 3kb2_A SPBC2 prophage-derived 65.4 2.9 9.8E-05 34.5 2.2 17 180-196 3-19 (173)
342 3hu3_A Transitional endoplasmi 64.9 2.2 7.6E-05 42.7 1.6 19 177-195 237-255 (489)
343 3fho_A ATP-dependent RNA helic 64.7 2.5 8.5E-05 42.3 1.9 72 216-297 357-432 (508)
344 3d8b_A Fidgetin-like protein 1 64.6 3 0.0001 39.6 2.4 54 140-196 80-135 (357)
345 2j37_W Signal recognition part 64.6 24 0.00082 35.2 9.1 19 180-198 103-121 (504)
346 3fmp_B ATP-dependent RNA helic 64.4 1.4 4.8E-05 43.5 0.0 70 216-295 333-406 (479)
347 3cm0_A Adenylate kinase; ATP-b 63.9 2.5 8.6E-05 35.5 1.6 20 177-196 3-22 (186)
348 2r62_A Cell division protease 63.4 1.8 6E-05 39.0 0.5 18 178-195 44-61 (268)
349 1u94_A RECA protein, recombina 63.1 8.5 0.00029 36.7 5.3 40 177-226 62-101 (356)
350 3crm_A TRNA delta(2)-isopenten 63.0 4 0.00014 38.5 2.9 16 180-195 7-22 (323)
351 3uie_A Adenylyl-sulfate kinase 62.7 3.2 0.00011 35.6 2.1 20 176-195 23-42 (200)
352 1g8p_A Magnesium-chelatase 38 62.4 4.1 0.00014 38.0 2.9 18 178-195 45-62 (350)
353 1ry6_A Internal kinesin; kines 62.3 5.2 0.00018 38.3 3.6 19 177-195 82-102 (360)
354 3d3q_A TRNA delta(2)-isopenten 62.3 3.6 0.00012 39.1 2.4 16 180-195 9-24 (340)
355 2bdt_A BH3686; alpha-beta prot 62.1 2.7 9.3E-05 35.5 1.5 19 179-197 3-21 (189)
356 3nwj_A ATSK2; P loop, shikimat 62.0 5.7 0.00019 35.8 3.7 21 176-196 46-66 (250)
357 3lnc_A Guanylate kinase, GMP k 62.0 2.7 9.4E-05 36.9 1.5 20 176-195 25-44 (231)
358 3c8u_A Fructokinase; YP_612366 61.5 3.4 0.00012 35.7 2.0 19 177-195 21-39 (208)
359 1m7g_A Adenylylsulfate kinase; 61.3 4.2 0.00014 35.2 2.6 31 165-196 13-43 (211)
360 3t61_A Gluconokinase; PSI-biol 61.1 3.8 0.00013 35.1 2.3 18 179-196 19-36 (202)
361 1f2t_A RAD50 ABC-ATPase; DNA d 60.8 4 0.00014 33.5 2.2 16 180-195 25-40 (149)
362 3eph_A TRNA isopentenyltransfe 60.3 3.8 0.00013 39.9 2.2 16 180-195 4-19 (409)
363 2c95_A Adenylate kinase 1; tra 60.3 4.5 0.00015 34.1 2.6 20 176-195 7-26 (196)
364 2v54_A DTMP kinase, thymidylat 60.2 4.3 0.00015 34.5 2.4 19 177-195 3-21 (204)
365 2rhm_A Putative kinase; P-loop 60.2 3.7 0.00013 34.5 2.0 18 178-195 5-22 (193)
366 3kta_A Chromosome segregation 60.0 4 0.00014 34.2 2.1 16 180-195 28-43 (182)
367 4f4c_A Multidrug resistance pr 59.8 5.6 0.00019 44.8 3.8 32 288-319 570-601 (1321)
368 3dmq_A RNA polymerase-associat 59.7 24 0.00083 38.2 8.8 91 215-319 502-598 (968)
369 3asz_A Uridine kinase; cytidin 59.7 3.8 0.00013 35.3 2.0 19 177-195 5-23 (211)
370 3qf7_A RAD50; ABC-ATPase, ATPa 59.7 3.9 0.00013 39.1 2.2 31 289-319 302-332 (365)
371 3tif_A Uncharacterized ABC tra 59.4 4.7 0.00016 35.9 2.6 32 288-319 161-192 (235)
372 1gvn_B Zeta; postsegregational 59.3 3.8 0.00013 37.7 2.0 18 179-196 34-51 (287)
373 2r8r_A Sensor protein; KDPD, P 59.0 11 0.00038 33.5 4.9 26 177-202 4-30 (228)
374 3k1j_A LON protease, ATP-depen 58.6 6.8 0.00023 40.1 4.0 23 173-195 55-77 (604)
375 2pez_A Bifunctional 3'-phospho 58.4 4.3 0.00015 34.0 2.1 19 177-195 4-22 (179)
376 1zd8_A GTP:AMP phosphotransfer 57.8 4.8 0.00017 35.2 2.4 19 177-195 6-24 (227)
377 1ye8_A Protein THEP1, hypothet 57.8 6.3 0.00021 33.4 3.0 16 180-195 2-17 (178)
378 3pxg_A Negative regulator of g 57.4 6.6 0.00022 38.8 3.5 19 178-196 201-219 (468)
379 2chq_A Replication factor C sm 57.3 13 0.00044 33.8 5.3 42 141-195 14-55 (319)
380 1xjc_A MOBB protein homolog; s 57.3 13 0.00046 31.3 5.0 15 180-194 6-20 (169)
381 2i3b_A HCR-ntpase, human cance 56.9 7.3 0.00025 33.4 3.3 20 178-197 1-20 (189)
382 1in4_A RUVB, holliday junction 56.7 6.4 0.00022 36.9 3.2 19 179-197 52-70 (334)
383 1aky_A Adenylate kinase; ATP:A 56.6 5.6 0.00019 34.5 2.6 19 177-195 3-21 (220)
384 2bwj_A Adenylate kinase 5; pho 56.6 5.7 0.00019 33.5 2.6 19 177-195 11-29 (199)
385 4a2w_A RIG-I, retinoic acid in 56.6 14 0.00049 39.9 6.2 79 215-299 630-721 (936)
386 1via_A Shikimate kinase; struc 56.5 5.6 0.00019 33.1 2.5 18 179-196 5-22 (175)
387 1tev_A UMP-CMP kinase; ploop, 56.4 5.1 0.00017 33.6 2.2 19 178-196 3-21 (196)
388 2r2a_A Uncharacterized protein 56.3 7.4 0.00025 33.8 3.3 44 291-338 88-132 (199)
389 3f9v_A Minichromosome maintena 56.2 5 0.00017 41.1 2.5 15 180-194 329-343 (595)
390 2v9p_A Replication protein E1; 56.2 6.8 0.00023 36.5 3.2 20 177-196 125-144 (305)
391 1zuh_A Shikimate kinase; alpha 56.1 5.5 0.00019 32.8 2.3 18 179-196 8-25 (168)
392 1zak_A Adenylate kinase; ATP:A 56.1 5.4 0.00018 34.7 2.4 20 177-196 4-23 (222)
393 2iyv_A Shikimate kinase, SK; t 56.0 6 0.00021 33.1 2.6 17 179-195 3-19 (184)
394 4dzz_A Plasmid partitioning pr 55.8 29 0.001 29.1 7.1 17 184-200 8-24 (206)
395 1nks_A Adenylate kinase; therm 55.5 5.2 0.00018 33.4 2.1 16 180-195 3-18 (194)
396 2yvu_A Probable adenylyl-sulfa 55.4 5.2 0.00018 33.7 2.1 21 177-197 12-32 (186)
397 2cbz_A Multidrug resistance-as 55.3 6 0.00021 35.3 2.6 19 177-195 30-48 (237)
398 4h1g_A Maltose binding protein 54.9 7.6 0.00026 40.6 3.7 25 171-195 454-480 (715)
399 3fb4_A Adenylate kinase; psych 54.7 5.6 0.00019 34.3 2.2 17 180-196 2-18 (216)
400 2wwf_A Thymidilate kinase, put 54.6 5.8 0.0002 33.9 2.3 20 177-196 9-28 (212)
401 4akg_A Glutathione S-transfera 54.6 5.3 0.00018 48.1 2.6 21 175-195 1264-1284(2695)
402 2cdn_A Adenylate kinase; phosp 54.5 6.5 0.00022 33.5 2.6 18 178-195 20-37 (201)
403 1cke_A CK, MSSA, protein (cyti 54.3 6.9 0.00024 33.9 2.8 19 178-196 5-23 (227)
404 1z5z_A Helicase of the SNF2/RA 54.0 84 0.0029 28.2 10.3 96 186-300 92-193 (271)
405 1nn5_A Similar to deoxythymidy 53.9 6.2 0.00021 33.8 2.4 20 177-196 8-27 (215)
406 2qt1_A Nicotinamide riboside k 53.8 6.2 0.00021 33.8 2.3 19 177-195 20-38 (207)
407 1e6c_A Shikimate kinase; phosp 53.8 6.6 0.00023 32.3 2.5 17 179-195 3-19 (173)
408 1qf9_A UMP/CMP kinase, protein 53.7 5.9 0.0002 33.1 2.2 16 180-195 8-23 (194)
409 4ag6_A VIRB4 ATPase, type IV s 53.4 9 0.00031 36.6 3.7 24 177-200 34-57 (392)
410 2plr_A DTMP kinase, probable t 53.3 5.8 0.0002 33.8 2.1 19 177-195 3-21 (213)
411 1sgw_A Putative ABC transporte 53.3 7.1 0.00024 34.3 2.7 32 288-319 149-180 (214)
412 3auy_A DNA double-strand break 53.1 5.6 0.00019 37.9 2.1 16 180-195 27-42 (371)
413 2if2_A Dephospho-COA kinase; a 53.1 6 0.0002 33.7 2.1 16 180-195 3-18 (204)
414 3dl0_A Adenylate kinase; phosp 53.0 6.2 0.00021 34.0 2.2 17 180-196 2-18 (216)
415 2pze_A Cystic fibrosis transme 52.9 6.9 0.00024 34.6 2.5 19 177-195 33-51 (229)
416 3ice_A Transcription terminati 52.9 32 0.0011 33.4 7.3 35 163-197 156-193 (422)
417 1g41_A Heat shock protein HSLU 52.9 6.8 0.00023 38.6 2.7 18 178-195 50-67 (444)
418 1fuu_A Yeast initiation factor 52.6 2.9 0.0001 39.5 0.0 71 216-296 259-333 (394)
419 1jjv_A Dephospho-COA kinase; P 52.5 6.5 0.00022 33.6 2.3 16 180-195 4-19 (206)
420 1rj9_A FTSY, signal recognitio 52.4 8.5 0.00029 35.7 3.2 19 178-196 102-120 (304)
421 2bbw_A Adenylate kinase 4, AK4 52.3 6.9 0.00024 34.7 2.5 20 177-196 26-45 (246)
422 2vli_A Antibiotic resistance p 52.1 5.6 0.00019 33.1 1.7 20 177-196 4-23 (183)
423 3gfo_A Cobalt import ATP-bindi 52.0 7 0.00024 35.8 2.5 49 288-342 159-207 (275)
424 1ukz_A Uridylate kinase; trans 52.0 6.7 0.00023 33.4 2.2 17 179-195 16-32 (203)
425 2ce7_A Cell division protein F 52.0 6.2 0.00021 39.3 2.3 53 140-195 12-66 (476)
426 2pcj_A ABC transporter, lipopr 51.9 7.1 0.00024 34.4 2.5 32 288-319 156-187 (224)
427 2jaq_A Deoxyguanosine kinase; 51.6 6.8 0.00023 33.1 2.2 16 180-195 2-17 (205)
428 1g6h_A High-affinity branched- 51.5 7.4 0.00025 35.1 2.6 32 288-319 169-200 (257)
429 2r2a_A Uncharacterized protein 51.3 6.2 0.00021 34.3 1.9 17 180-196 7-23 (199)
430 3bs4_A Uncharacterized protein 51.2 19 0.00065 32.6 5.2 53 177-240 20-72 (260)
431 4e22_A Cytidylate kinase; P-lo 51.1 9.5 0.00032 34.1 3.2 20 177-196 26-45 (252)
432 1ak2_A Adenylate kinase isoenz 51.1 7.7 0.00026 34.1 2.6 19 177-195 15-33 (233)
433 2ghi_A Transport protein; mult 51.0 8.6 0.00029 34.8 2.9 31 289-319 172-202 (260)
434 4a4z_A Antiviral helicase SKI2 51.0 82 0.0028 34.2 11.1 79 216-301 336-453 (997)
435 1tf5_A Preprotein translocase 50.8 65 0.0022 34.3 9.9 75 216-300 432-516 (844)
436 3qks_A DNA double-strand break 50.8 7.1 0.00024 33.8 2.2 16 180-195 25-40 (203)
437 1ji0_A ABC transporter; ATP bi 50.8 7.8 0.00027 34.5 2.6 32 288-319 155-186 (240)
438 4g1u_C Hemin import ATP-bindin 50.7 7.7 0.00026 35.3 2.6 30 290-319 165-194 (266)
439 3cf2_A TER ATPase, transitiona 50.7 3.4 0.00011 44.0 0.1 54 139-195 472-528 (806)
440 2ff7_A Alpha-hemolysin translo 50.7 8.8 0.0003 34.4 2.9 32 288-319 161-192 (247)
441 1gku_B Reverse gyrase, TOP-RG; 50.6 21 0.00072 39.1 6.4 77 216-300 275-352 (1054)
442 2pt5_A Shikimate kinase, SK; a 50.6 7.6 0.00026 31.8 2.3 16 180-195 2-17 (168)
443 3b9q_A Chloroplast SRP recepto 50.5 8.3 0.00028 35.8 2.8 21 177-197 99-119 (302)
444 1b0u_A Histidine permease; ABC 50.2 7.9 0.00027 35.0 2.5 32 288-319 169-200 (262)
445 2pbr_A DTMP kinase, thymidylat 50.2 7.1 0.00024 32.7 2.1 16 180-195 2-17 (195)
446 3be4_A Adenylate kinase; malar 49.8 7.8 0.00027 33.6 2.4 18 178-195 5-22 (217)
447 3a4m_A L-seryl-tRNA(SEC) kinas 49.3 7.5 0.00026 34.9 2.2 19 178-196 4-22 (260)
448 3nh6_A ATP-binding cassette SU 49.2 7.1 0.00024 36.4 2.1 31 289-319 207-237 (306)
449 2og2_A Putative signal recogni 49.1 17 0.00059 34.6 4.8 20 178-197 157-176 (359)
450 1tf7_A KAIC; homohexamer, hexa 49.1 15 0.00052 36.7 4.7 30 176-205 37-66 (525)
451 2zu0_C Probable ATP-dependent 49.0 8.5 0.00029 35.0 2.5 30 290-319 182-211 (267)
452 2f1r_A Molybdopterin-guanine d 49.0 5.8 0.0002 33.5 1.3 17 180-196 4-20 (171)
453 2qi9_C Vitamin B12 import ATP- 49.0 8.6 0.00029 34.6 2.5 27 293-319 154-180 (249)
454 2z0h_A DTMP kinase, thymidylat 48.9 7.6 0.00026 32.6 2.1 16 181-196 3-18 (197)
455 2yz2_A Putative ABC transporte 48.8 8.7 0.0003 34.8 2.6 32 288-319 154-185 (266)
456 1mv5_A LMRA, multidrug resista 48.7 8.2 0.00028 34.4 2.4 30 290-319 157-186 (243)
457 2v3c_C SRP54, signal recogniti 48.6 16 0.00054 35.8 4.5 21 179-199 100-120 (432)
458 1htw_A HI0065; nucleotide-bind 48.6 8 0.00027 32.1 2.1 20 176-195 31-50 (158)
459 1vpl_A ABC transporter, ATP-bi 48.5 8.8 0.0003 34.7 2.5 32 288-319 162-193 (256)
460 3pxi_A Negative regulator of g 48.4 7.9 0.00027 40.7 2.5 18 178-195 201-218 (758)
461 2nq2_C Hypothetical ABC transp 48.3 8.7 0.0003 34.6 2.5 32 288-319 144-175 (253)
462 1rz3_A Hypothetical protein rb 47.9 7.6 0.00026 33.3 1.9 18 178-195 22-39 (201)
463 2p5t_B PEZT; postsegregational 47.8 5.6 0.00019 35.6 1.1 17 179-195 33-49 (253)
464 2olj_A Amino acid ABC transpor 47.4 9.3 0.00032 34.7 2.5 32 288-319 175-206 (263)
465 2d2e_A SUFC protein; ABC-ATPas 47.3 11 0.00036 33.9 2.9 30 290-319 161-190 (250)
466 1gm5_A RECG; helicase, replica 47.2 7.3 0.00025 41.3 2.0 81 215-301 577-668 (780)
467 2ihy_A ABC transporter, ATP-bi 47.2 9.4 0.00032 35.0 2.5 32 288-319 177-208 (279)
468 2ixe_A Antigen peptide transpo 46.9 11 0.00037 34.3 2.9 32 288-319 172-203 (271)
469 3vkg_A Dynein heavy chain, cyt 46.8 8.3 0.00029 47.1 2.6 21 174-194 1300-1320(3245)
470 1ypw_A Transitional endoplasmi 46.8 7.7 0.00026 41.2 2.2 19 177-195 237-255 (806)
471 1uf9_A TT1252 protein; P-loop, 46.7 9.9 0.00034 32.1 2.5 16 180-195 10-25 (203)
472 1e4v_A Adenylate kinase; trans 46.5 8.8 0.0003 33.1 2.2 16 180-195 2-17 (214)
473 1vht_A Dephospho-COA kinase; s 46.5 9 0.00031 33.1 2.2 17 179-195 5-21 (218)
474 1nij_A Hypothetical protein YJ 46.4 17 0.00059 33.7 4.3 16 180-195 6-21 (318)
475 3qkt_A DNA double-strand break 46.3 8.7 0.0003 36.1 2.2 43 288-337 270-312 (339)
476 3h1t_A Type I site-specific re 46.0 72 0.0025 31.9 9.3 95 215-320 438-542 (590)
477 3tqf_A HPR(Ser) kinase; transf 45.9 11 0.00038 32.2 2.6 19 177-195 15-33 (181)
478 2jeo_A Uridine-cytidine kinase 45.5 8.2 0.00028 34.2 1.8 20 177-196 24-43 (245)
479 3l9o_A ATP-dependent RNA helic 45.5 49 0.0017 36.5 8.3 74 216-295 441-553 (1108)
480 3kta_B Chromosome segregation 45.4 16 0.00054 30.9 3.5 40 290-337 86-125 (173)
481 4ddu_A Reverse gyrase; topoiso 45.3 24 0.00083 38.9 5.8 74 216-301 309-388 (1104)
482 2xb4_A Adenylate kinase; ATP-b 45.1 9.7 0.00033 33.2 2.2 16 180-195 2-17 (223)
483 2dhr_A FTSH; AAA+ protein, hex 45.0 9.1 0.00031 38.3 2.2 51 140-195 27-81 (499)
484 3tlx_A Adenylate kinase 2; str 44.5 9.4 0.00032 33.9 2.1 20 177-196 28-47 (243)
485 2bbs_A Cystic fibrosis transme 44.4 11 0.00037 34.8 2.5 19 177-195 63-81 (290)
486 2w00_A HSDR, R.ECOR124I; ATP-b 44.3 1.2E+02 0.0041 33.1 11.0 26 215-240 536-561 (1038)
487 1pui_A ENGB, probable GTP-bind 43.7 9.5 0.00033 32.3 1.9 19 177-195 25-43 (210)
488 2vp4_A Deoxynucleoside kinase; 43.6 10 0.00034 33.3 2.1 18 177-194 19-36 (230)
489 1odf_A YGR205W, hypothetical 3 43.6 12 0.0004 34.5 2.6 16 180-195 33-48 (290)
490 3fkq_A NTRC-like two-domain pr 43.5 77 0.0026 29.8 8.5 21 181-201 146-167 (373)
491 3aez_A Pantothenate kinase; tr 43.4 9.8 0.00034 35.4 2.1 19 177-195 89-107 (312)
492 1r6b_X CLPA protein; AAA+, N-t 43.3 16 0.00054 38.3 3.9 17 180-196 490-506 (758)
493 2grj_A Dephospho-COA kinase; T 43.3 11 0.00036 32.5 2.1 17 180-196 14-30 (192)
494 1r6b_X CLPA protein; AAA+, N-t 43.2 11 0.00037 39.6 2.5 20 177-196 206-225 (758)
495 2qen_A Walker-type ATPase; unk 43.2 15 0.00052 33.7 3.4 19 177-195 30-48 (350)
496 3sop_A Neuronal-specific septi 42.7 10 0.00035 34.5 2.0 16 180-195 4-19 (270)
497 1ltq_A Polynucleotide kinase; 42.6 11 0.00037 34.3 2.2 27 308-341 190-216 (301)
498 3tqc_A Pantothenate kinase; bi 42.5 19 0.00064 33.7 3.9 16 180-195 94-109 (321)
499 1gtv_A TMK, thymidylate kinase 42.4 6 0.00021 33.9 0.4 15 181-195 3-17 (214)
500 1np6_A Molybdopterin-guanine d 42.1 12 0.00041 31.6 2.2 15 180-194 8-22 (174)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.6e-39 Score=299.08 Aligned_cols=209 Identities=29% Similarity=0.426 Sum_probs=188.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
..+.+..+|+++++++.+++++.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+...... ...
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~--~~~ 100 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL--ERG 100 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC--CTT
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc--ccC
Confidence 455678899999999999999999999999999999999999999999999999999999999999998754211 123
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.++++|||+||++|+.|+++.++.+....++.+.+++|+.....+...+..+++|+|+||++|.+++.++...+.++++|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 57899999999999999999999999999999999999999988888888889999999999999999888889999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||||||+|++++|+..+..|++.++ +++|+++||||+++. ..++..+..++
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~--------~~~q~~~~SAT~~~~~~~~~~~~l~~~ 232 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIR--------PDRQTLMWSATWPKEVRQLAEDFLKDY 232 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSC--------SSCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCC--------ccceEEEEEeecCHHHHHHHHHHCCCC
Confidence 9999999999999999999998876 578999999999987 67777766543
No 2
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7e-38 Score=288.10 Aligned_cols=211 Identities=25% Similarity=0.368 Sum_probs=177.5
Q ss_pred cCCCccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCC
Q 015946 133 SGSNAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211 (397)
Q Consensus 133 ~~~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 211 (397)
....+.+..+|++ +++++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-~ 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-R 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-h
Confidence 3445667888999 8999999999999999999999999999999999999999999999999999999987643211 1
Q ss_pred CCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 212 MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 212 ~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
....++++|||+||++|+.|+++.+..+. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357899999999999999999999886 45788999999988887777788889999999999999999888889999
Q ss_pred ceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 292 ~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
++|||||||++++++|...+..++..++ +++|+++||||+++. ..++..+..++
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVR--------PDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSC--------SSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCC--------cCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 9999999999999999999999998876 578999999999987 66776666544
No 3
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=291.48 Aligned_cols=202 Identities=26% Similarity=0.432 Sum_probs=183.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
.....+|+++++++.++++|..+||..|+++|.++|+.++.|+|++++||||||||++|++|++..+.... .+
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-------~~ 111 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-------QR 111 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-------CS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-------CC
Confidence 44577899999999999999999999999999999999999999999999999999999999999887632 46
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcceEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVV 295 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lV 295 (397)
+++|||+||++|+.|+++.++.+....++.+.+++|+.....+...+..+++|+|+||++|.+++.+ ..+.+.++++||
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 7899999999999999999999988889999999999988887777778899999999999999986 556789999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 296 lDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|||||++++++|...+..++..++ .++|+++||||+++. ..++.+++.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIP--------RDRKTFLFSATMTKKVQKLQRAALKNP 242 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSC--------SSSEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred EcChhhhhccChHHHHHHHHHhCC--------CCCeEEEEeccCCHHHHHHHHHHCCCC
Confidence 999999999999999999998875 578999999999987 67777776655
No 4
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=302.10 Aligned_cols=200 Identities=25% Similarity=0.342 Sum_probs=174.9
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCC
Q 015946 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (397)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 213 (397)
+.....+|++++|++.++++|..+||..|+++|.++||.++.| +|++++||||||||++|++|+++.+...
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------- 159 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------- 159 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-------
T ss_pred CcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-------
Confidence 3445788999999999999999999999999999999999987 9999999999999999999999987542
Q ss_pred CCCCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCc
Q 015946 214 PMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDI 291 (397)
Q Consensus 214 ~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l 291 (397)
..++++|||+|||+||.|++..+..+.... ++.+.+++|+...... ...+++|+||||++|++++.+ +.+.+.++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 357899999999999999999999988764 6888888888765432 245689999999999999976 56778999
Q ss_pred ceEEEcCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 292 RYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 292 ~~lVlDEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
++|||||||+|++ .+|...+..|++.++ .++|+++||||+++. ..++..++.++
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~--------~~~q~i~~SAT~~~~v~~~a~~~l~~p 292 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPDP 292 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSC--------TTCEEEEEESCCCHHHHHHHHHHSSSC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCC--------CCCEEEEEeccCCHHHHHHHHHHCCCC
Confidence 9999999999998 689999999988776 578999999999988 77777777654
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.5e-37 Score=308.00 Aligned_cols=209 Identities=26% Similarity=0.450 Sum_probs=186.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
..+.++.+|++++|++.++++|.++||.+|+++|.++||.++.|+|++++||||||||++|++|++..+...... ...
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~--~~~ 127 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE--LEL 127 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC--CCT
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc--ccc
Confidence 445678899999999999999999999999999999999999999999999999999999999999998864321 123
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.++++|||+|||+|+.|+++.++.+....++++++++||.....+...+..+++|+|+||++|++++.++.+.+.++++|
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 57899999999999999999999999888999999999999988888888899999999999999999988889999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
||||||+|++++|..++..|+..+.. .+.+|+++||||+++. ..++..+..
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~------~~~~q~l~~SAT~~~~~~~~~~~~l~ 259 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTM------RPEHQTLMFSATFPEEIQRMAGEFLK 259 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTS------CSSCEEEEEESCCCHHHHHHHHTTCS
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCC------CCCceEEEEeccCCHHHHHHHHHhcc
Confidence 99999999999999999999987631 2578999999999877 555555544
No 6
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.5e-37 Score=277.22 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=178.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-------KDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-------SCSCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-------CCCeeEE
Confidence 469999999999999999999999999999999999999999999999999999999999876542 2567999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
|++||++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+++.++...+.++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 99999999999999999988776 78999999999988877777888999999999999999988888999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|++++.+|...+..++..++ .++|+++||||+++. ..++..+..++
T Consensus 156 h~~~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLP--------KNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSC--------TTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred HHhHhhCcHHHHHHHHHhCC--------ccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 99999999999999998876 478999999999876 56666665544
No 7
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-37 Score=283.90 Aligned_cols=199 Identities=25% Similarity=0.425 Sum_probs=177.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..+|+++++++.+++++.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-------RAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-------SCSCCE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-------cCCceE
Confidence 4679999999999999999999999999999999999999999999999999999999999987542 246799
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcC----CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 220 IVLCTTEESADQGFHMAKFISHCA----RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
|||+||++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+++..+...+.++++||
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 999999999999999999988766 6888899998877665555666789999999999999998888889999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 296 lDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
+||||++++++|...+..++..++ .++|+++||||+++. .++++.++.+|
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~~~~p 206 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMP--------KDLQMLVFSATIPEKLKPFLKKYMENP 206 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSC--------TTCEEEEEESCCCGGGHHHHHHHCSSC
T ss_pred EcCchHHhhhChHHHHHHHHHhCC--------cccEEEEEecCCCHHHHHHHHHHcCCC
Confidence 999999999999999999998875 578999999999887 66777776655
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.4e-37 Score=282.47 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=174.2
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
..+....+|+++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... .
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-------~ 90 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-------N 90 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------S
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------C
Confidence 344556789999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcce
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 293 (397)
.++++|||+||++|+.|+++.++.+.... ++++..++|+.....+...+. +++|+|+||++|.+++..+.+.+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 46799999999999999999999987665 789999999988877666554 6899999999999999988888899999
Q ss_pred EEEcCCCccccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 294 VVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 294 lVlDEah~~l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
||+||||+++++| |...+..|++.++ ..+|+++||||+++. .+++..+..+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLP--------ASKQMLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSC--------SSCEEEEEESCCCHHHHHHHTTTCSS
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCC--------CCCeEEEEEeccCHHHHHHHHHHcCC
Confidence 9999999999998 9999999998886 478999999999876 4555555443
No 9
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.1e-37 Score=286.00 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=170.8
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
.+.+..+|+++++++.++++|..+||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+... ..
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-------~~ 97 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-------FK 97 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------SC
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------CC
Confidence 34557889999999999999999999999999999999999999999999999999999999999887542 24
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCC-ccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
++++|||+||++|+.|+++.++.+....++.+..++|+.....+...+..+ ++|+|+||++|.+++..+.+.+.++++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 679999999999999999999999888889999999988776666555544 8999999999999999888889999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||||||++++++|...+..+++.++ ..+|+++||||+++. .+++..++.++
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLN--------TSIQVVLLSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EECCchHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHCCCC
Confidence 9999999999999999999998875 578999999999977 66777666543
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=281.19 Aligned_cols=207 Identities=26% Similarity=0.413 Sum_probs=179.1
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCC
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 214 (397)
.......+|+++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+..... ...
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~---~~~ 95 (236)
T 2pl3_A 19 INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW---TST 95 (236)
T ss_dssp CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC---CGG
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc---ccc
Confidence 34556788999999999999999999999999999999999999999999999999999999999998875321 112
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-CCCCCCcce
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRY 293 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~ 293 (397)
.++++||++||++|+.|+++.++.+....++.+..++|+.....+...+ .+++|+|+||++|.+++... .+.+.++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 4779999999999999999999999888889999999998877666555 46899999999999998764 567889999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 294 lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||+||||++++++|...+..++..++ ..+|+++||||+++. ..+++.++.++
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~~~~p 227 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLP--------KKRQTLLFSATQTKSVKDLARLSLKNP 227 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSC--------TTSEEEEEESSCCHHHHHHHHHSCSSC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCC--------CCCeEEEEEeeCCHHHHHHHHHhCCCC
Confidence 99999999999999999999998886 578999999999987 66666666544
No 11
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=288.17 Aligned_cols=203 Identities=27% Similarity=0.422 Sum_probs=176.2
Q ss_pred ccccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCC
Q 015946 140 VSSFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (397)
Q Consensus 140 ~~~f~~l~--l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 217 (397)
..+|.+++ +++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+...... ...++
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~ 127 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---PRNGT 127 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---GGGCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---ccCCc
Confidence 45688887 99999999999999999999999999999999999999999999999999999998763211 12477
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC-CCCCCCcceEEE
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 296 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lVl 296 (397)
++|||+||++|+.|+++.++.+....++.+..++|+.....+...+..+++|+|+||+++.+++... .+.+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 8999999999999999999999988899999999999988887777778999999999999998775 467899999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 297 DEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||||+|++++|+..+..|+..++ ..+|+++||||+++. ..+++.+...+
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~--------~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLP--------TRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSC--------SSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred cChHHHhhhhHHHHHHHHHHhCC--------CCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 99999999999999999999886 578999999999987 56666554433
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.2e-36 Score=278.80 Aligned_cols=202 Identities=24% Similarity=0.368 Sum_probs=173.1
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
.+....+|+++++++.+++.+.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------~~ 81 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VK 81 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------CC
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-------CC
Confidence 34456789999999999999999999999999999999999999999999999999999999999987542 25
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
++++||++||++|+.|+++.+..+....++.+..++|+.....+...+.. ++|+|+||++|++++.++...+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 77999999999999999999999988889999999999887766655554 89999999999999998888899999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 296 lDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
+||||++++++|...+..++..++ .++|+++||||+++. .++++.+..++
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred EcChhHHhhhhhHHHHHHHHHhCC--------ccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 999999999999999999998875 578999999999987 66777666544
No 13
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.2e-37 Score=286.30 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=182.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCC--CCCCC
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMH 216 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~--~~~~~ 216 (397)
++.+|+++++++.++++|..+||..|+++|.++|+.++.|+|++++||||||||++|++|++..+........ ....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999875421100 12245
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
+++|||+||++|+.|+++.++.+....++.+..++|+.....+...+..+++|+|+||++|.+++..+...+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 79999999999999999999999888889999999999888888888888999999999999999988888999999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 297 DEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
||||+|++++|+..+..|+..+... .+.++|+++||||+++. ..++..+..++
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 234 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMP----SGINRQTLMFSATFPKEIQKLAADFLYNY 234 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCC----CGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCC----CCCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 9999999999999999999865310 11267999999999877 66777666543
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.5e-36 Score=271.21 Aligned_cols=198 Identities=27% Similarity=0.426 Sum_probs=176.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
+|+++++++.+++.+.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.... ....++++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----ERGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----CTTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----ccCCCCcEEE
Confidence 699999999999999999999999999999999999999999999999999999999999876421 1235789999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
++||++|+.|+++.+..+... +++..++|+.....+...+..+++|+|+||+++.+++..+.+.+.++++||+||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 999999999999999888654 678889999887777777777899999999999999998888899999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
+++++|...+..++..++ .++|++++|||+++. ..++++++.++
T Consensus 156 ~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATP--------PSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp HHHTTCHHHHHHHHHTSC--------TTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred hhccchHHHHHHHHHhCC--------ccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 999999999999988775 578999999999987 67777777654
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-35 Score=270.59 Aligned_cols=199 Identities=24% Similarity=0.358 Sum_probs=174.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-------CCCEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999876432 245699
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEc
Q 015946 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 297 (397)
|||+||++|+.|+++.++.+.... ++++..++|+.....+...+. ..++|+|+||+++.+++.++.+.+.++++||+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 999999999999999999987766 789999999988777666554 457999999999999999888889999999999
Q ss_pred CCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 298 EADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 298 Eah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
|||++++ .+|...+..+++.++ .++|++++|||+++. ..+++.++.++
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p 215 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQDP 215 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSC--------SSSEEEEEESCCCTTTHHHHHTTCSSC
T ss_pred CHHHHhcccCcHHHHHHHHHhCC--------CcCeEEEEEeecCHHHHHHHHHHcCCC
Confidence 9999987 478888888887665 578999999999987 77777777654
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=277.54 Aligned_cols=206 Identities=21% Similarity=0.375 Sum_probs=171.0
Q ss_pred CCcccccccccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccC
Q 015946 135 SNAEVVSSFQEL----GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL 210 (397)
Q Consensus 135 ~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 210 (397)
..+.++.+|+++ ++++.+++++.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+...
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---- 94 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP---- 94 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----
Confidence 345567778887 899999999999999999999999999999999999999999999999999999988642
Q ss_pred CCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHH-HHhcCCccEEEeChHHHHHHHhcC--CCC
Q 015946 211 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSEVLQHIEDR--NVS 287 (397)
Q Consensus 211 ~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~IlV~TP~~L~~~l~~~--~~~ 287 (397)
...++++|||+||++|+.|+++.+..+....++.+..++|+....... .....+++|+|+||++|.+++... .+.
T Consensus 95 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 95 --ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp --CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred --ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 225779999999999999999999999888888888877654332221 223456899999999999999876 567
Q ss_pred CCCcceEEEcCCCcccc---CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhcc
Q 015946 288 CDDIRYVVLDEADTLFD---RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERDN 353 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~---~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~~ 353 (397)
+.++++|||||||+|++ .+|...+..++..+. +.++|+++||||+++. ..++..+..++
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~SAT~~~~v~~~~~~~l~~p 235 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT-------SHKVRRAMFSATFAYDVEQWCKLNLDNV 235 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC-------CTTCEEEEEESSCCHHHHHHHHHHSSSC
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcC-------CCCcEEEEEeccCCHHHHHHHHHhCCCC
Confidence 89999999999999998 468888888877653 2578999999999876 56666655443
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=282.67 Aligned_cols=213 Identities=23% Similarity=0.344 Sum_probs=182.5
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhcccc-----
Q 015946 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL----- 209 (397)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~----- 209 (397)
..+.++.+|++++|++.++++|..+||..|+++|.++|+.++.|+|++++||||||||++|++|++..+......
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 345667889999999999999999999999999999999999999999999999999999999999988654210
Q ss_pred ------CCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc
Q 015946 210 ------LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 283 (397)
Q Consensus 210 ------~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~ 283 (397)
.+....++++|||+||++|+.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER 168 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc
Confidence 01122357899999999999999999999988889999999999998888888888899999999999999998
Q ss_pred CCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 284 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 284 ~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
+.+.+.++++|||||||++++++|...+..++..... ......|++++|||+++. ..+...+..
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 233 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM----PPKGVRHTMMFSATFPKEIQMLARDFLD 233 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC----CCBTTBEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC----CCcCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 8888999999999999999999999999998875321 111368999999999876 445555444
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-33 Score=280.29 Aligned_cols=197 Identities=23% Similarity=0.373 Sum_probs=177.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
...+|+++++++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~~ 107 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-------VRETQ 107 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-------SCSCC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-------cCCce
Confidence 45689999999999999999999999999999999999999999999999999999999999876432 25679
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++|||||
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 99999999999999999999998889999999999998888877777899999999999999999888899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhh
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLE 350 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~ 350 (397)
||++++++|...+..++..++ ...|++++|||+++. ..+...+.
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~ 232 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLP--------PATQVVLISATLPHEILEMTNKFM 232 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSC--------TTCEEEEEESCCCHHHHTTGGGTC
T ss_pred HHHHHhhhhHHHHHHHHHhCc--------cCceEEEEEcCCCHHHHHHHHHHc
Confidence 999999999999999888775 578999999999876 34444433
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=269.63 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=178.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
.....+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..+
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~~~ 108 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-------LKA 108 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-------SCS
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-------CCc
Confidence 4456789999999999999999999999999999999999999999999999999999999999887542 246
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
.++|||+||++|+.|+++.+..+....++.+..++|+.........+. .+++|+|+||++|++++..+.+.+.++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888999999999988877766655 6789999999999999999888889999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 296 lDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
|||||++++++|...+..++..++ .++|+|+||||+++. ..+...+..
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 237 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLN--------SNTQVVLLSATMPSDVLEVTKKFMR 237 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSC--------TTCEEEEECSCCCHHHHHHHTTTCS
T ss_pred EECHHHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHcC
Confidence 999999999999999999988775 588999999999876 444444443
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.3e-32 Score=268.86 Aligned_cols=189 Identities=23% Similarity=0.392 Sum_probs=170.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
...+|++++|++.++++|.++||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-------~~~~~ 91 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-------LNKIQ 91 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-------SCSCC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-------cCCcc
Confidence 35679999999999999999999999999999999999999999999999999999999999876542 24678
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+|||+||++|+.|+++.+..+....++.+..++|+.....+...+...++|+|+||++|++++......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999988889999999999988877777778899999999999999988888899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
||++++.+|...+..++..++ ...|++++|||++..
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~--------~~~~~i~lSAT~~~~ 207 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLP--------PTHQSLLFSATFPLT 207 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSC--------SSCEEEEEESCCCHH
T ss_pred chHhhhhchHHHHHHHHHhCC--------cCceEEEEEecCCHH
Confidence 999988888888888877665 578999999999866
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.98 E-value=3.4e-31 Score=261.16 Aligned_cols=196 Identities=23% Similarity=0.365 Sum_probs=170.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
.+|+++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~~~l 80 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSVL 80 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-------TTCCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-------CCCeeEE
Confidence 579999999999999999999999999999999999999999999999999999999999876532 2467999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhc-CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
|++||++|+.|+.+.+..+.... ++++..++|+.........+. ..++|+|+||++|..++......+.++++||+||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99999999999999999987765 789999999988777665554 4479999999999999998888899999999999
Q ss_pred CCccccC-CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 299 ADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 299 ah~~l~~-~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
||+++++ +|...+..++..++ ...|++++|||+++. ..+...+..
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 207 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQ 207 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSC--------SSSEEEEEESSCCSTHHHHHHHHCS
T ss_pred HHHHhhccchHHHHHHHHhhCC--------CCceEEEEEeeCCHHHHHHHHHHcC
Confidence 9999874 67778887777654 578999999999988 455555444
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.1e-31 Score=264.73 Aligned_cols=197 Identities=24% Similarity=0.370 Sum_probs=174.6
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCC
Q 015946 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 217 (397)
....+|+++++++.+++++..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-------~~~~ 90 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VKAP 90 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------CCSC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-------CCCC
Confidence 345679999999999999999999999999999999999999999999999999999999999887542 2577
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEc
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 297 (397)
++||++||++|+.|+++.+..+....++.+..++|+.........+. +++|+|+||++|++.+..+.+.+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99999999999999999999998888999999999988776655554 47999999999999999888888999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhh
Q 015946 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLE 350 (397)
Q Consensus 298 Eah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~ 350 (397)
|||++++++|...+..++..++ +..|++++|||+++. ..+...+.
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~ 215 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFM 215 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHC
T ss_pred ChHHhhCCCcHHHHHHHHHhCC--------CCceEEEEEEecCHHHHHHHHHhc
Confidence 9999999999999999998876 578999999999876 34444443
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=9.2e-32 Score=280.25 Aligned_cols=207 Identities=24% Similarity=0.334 Sum_probs=172.1
Q ss_pred ccccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 142 SFQELG----LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 142 ~f~~l~----l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
+|+++. |+++++++|..+||..|+|+|.++|+.++ .|+|++++||||+|||++|++|+++.+...... ...
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~---~~~ 94 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQY 94 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STT
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc---ccC
Confidence 455554 99999999999999999999999999999 788999999999999999999999998875321 224
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhc----CCcceeeecCCCChHHHHHHh-cCCccEEEeChHHHHHHHhcC-CCCCC
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHC----ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDR-NVSCD 289 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~TP~~L~~~l~~~-~~~l~ 289 (397)
++++|||+||++|+.|++..+..+... ..+.+..++|+.....+...+ ..+++|+|+||++|++++... ...+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 679999999999999999999887532 356788888988877766655 346899999999999999764 44678
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
.+++|||||||+|++++|.+.+..|+..++.... ....++|+++||||+++. ..++.++...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~l~~ 237 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIMNK 237 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTCCS
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc-ccccCceEEEEeccCChHHHHHHHHHcCC
Confidence 8999999999999999999999999998875431 122478999999999987 5666666544
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=7.5e-32 Score=274.33 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=165.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCC
Q 015946 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 215 (397)
....+|.+++|++.++++|.++||..|+++|.++|+.++.| +++|++||||||||++|++|++..+... ..
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------~~ 161 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------NK 161 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-------SC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-------CC
Confidence 45678999999999999999999999999999999999987 8999999999999999999999877542 24
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCCCCcce
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRY 293 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~ 293 (397)
++++|||+||++|+.|++..+..+.... ++.+.+..++...... ....++|+||||++|++++.+ +.+.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 6799999999999999999999887654 6777777777654332 234579999999999999976 5567899999
Q ss_pred EEEcCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 294 VVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 294 lVlDEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
|||||||+|++ .+|...+..+++.++ .++|+|++|||+++. ..++..+...
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~ 291 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPD 291 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSC--------TTSEEEEEESCCCHHHHHHHHHHSSS
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCC--------ccceEEEEeCCCCHHHHHHHHHHcCC
Confidence 99999999987 578888887877665 578999999999987 4555555443
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=2.9e-31 Score=275.18 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
|++.++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++.+...... ...++++|||+||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lil~Pt 155 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 155 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeEEEEcCc
Confidence 99999999999999999999999999999 678999999999999999999999999875321 2246799999999
Q ss_pred hhHHHHHHHHHHHhhhc----CCcceeeecCCCChHHHHHHh-cCCccEEEeChHHHHHHHhcC-CCCCCCcceEEEcCC
Q 015946 226 EESADQGFHMAKFISHC----ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEA 299 (397)
Q Consensus 226 reLa~Qv~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lVlDEa 299 (397)
++|+.|++..++.+... ..+.+..++|+.....+...+ ..+++|+|+||++|++++.+. ...+.++++||||||
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 99999999999887542 246678888988877766555 447899999999999998764 345788999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
|+|++++|.+.+..|+..++.... ....++|+++||||+++. ..++.++...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~~~~ 288 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIMNK 288 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTCCS
T ss_pred HHHhccchHHHHHHHHHhhhhccc-cCccCceEEEEEccCCHHHHHHHHHhcCC
Confidence 999999999999999999875432 223478999999999987 5666665544
No 26
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=9.3e-31 Score=259.58 Aligned_cols=201 Identities=25% Similarity=0.339 Sum_probs=169.3
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccC
Q 015946 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL 210 (397)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 210 (397)
...+..+..+|+++++++.++++|.++||..|+++|.++|+.++.| ++++++||||+|||++|++|++..+...
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---- 92 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---- 92 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc----
Confidence 3444556789999999999999999999999999999999999987 8999999999999999999999887542
Q ss_pred CCCCCCCceEEEcCchhHHHHHHHHHHHhhhcC-CcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc-CCCCC
Q 015946 211 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSC 288 (397)
Q Consensus 211 ~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~-~~~~l 288 (397)
..++++|||+||++|+.|+++.+..+.... ++.+....|+...... ....++|+|+||++|++++.+ ..+.+
T Consensus 93 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 93 ---NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred ---CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 256799999999999999999999887664 6778877777654432 244579999999999999966 56678
Q ss_pred CCcceEEEcCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 289 DDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
.++++|||||||++++ .+|...+..++..++ .++|++++|||+++. ..+...+..
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 223 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVP 223 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--------CCceEEEEEeecCHHHHHHHHHhcC
Confidence 9999999999999987 578888888887775 578999999999987 455555543
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1.4e-30 Score=256.42 Aligned_cols=194 Identities=26% Similarity=0.434 Sum_probs=167.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
...+|++++|++.++++|.++||..|+++|.++|+.++.| +++++++|||+|||++|++|++..+... ..+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~~~ 75 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-------DAS 75 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------CCS
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-------CCC
Confidence 3578999999999999999999999999999999999998 8999999999999999999999877542 257
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
+++|||+||++|+.|+++.+..+....++.+...+++..... ...+++|+|+||++|.+++.+....+.++++||+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 799999999999999999999998888888888887754332 1235899999999999999988888999999999
Q ss_pred cCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhh
Q 015946 297 DEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLER 351 (397)
Q Consensus 297 DEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~ 351 (397)
||||++.+ .++...+..++..++ .+.|++++|||+++. ..+..++..
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 200 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLP--------KDTQLVLFSATFADAVRQYAKKIVP 200 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSC
T ss_pred EChhhhcCccccHHHHHHHHHhCC--------CCcEEEEEEecCCHHHHHHHHHhCC
Confidence 99999988 578888888877765 578999999999876 555555543
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-30 Score=253.76 Aligned_cols=193 Identities=26% Similarity=0.429 Sum_probs=170.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
..+|++++|++.++++|.++||..|+++|.++|+.++.| +++++++|||+|||++|++|++..+... .+.+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--------~~~~ 76 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN--------NGIE 76 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS--------SSCC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc--------CCCc
Confidence 357999999999999999999999999999999999988 6999999999999999999999876532 4679
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+||++||++|+.|+++.+..+....++.+..++|+.....+...+. .++|+|+||++|.+++..+...+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 9999999999999999999998888899999999988777666555 589999999999999998888899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhh
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECL 349 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l 349 (397)
||++.+++|...+..++..++ ...|++++|||+++. ..+...+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~ 199 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACN--------KDKRILLFSATMPREILNLAKKY 199 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSC--------SSCEEEEECSSCCHHHHHHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCC--------CCceEEEEeeccCHHHHHHHHHH
Confidence 999999999999988888765 578999999999876 3344433
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2e-29 Score=243.12 Aligned_cols=173 Identities=28% Similarity=0.407 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
|++.+.++|.++||..|+++|.++++.+++|+++++++|||+|||++|++|++.. +.++|||+||++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHH
Confidence 5789999999999999999999999999999999999999999999999998862 568999999999
Q ss_pred HHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCC
Q 015946 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307 (397)
Q Consensus 228 La~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f 307 (397)
|+.|+++.+..+....++.+..++|+.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+++|
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 99999999999988889999999999888776666654 89999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 308 GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 308 ~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...+..++..++ ...+++++|||+++.
T Consensus 147 ~~~~~~~~~~~~--------~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 147 IDDIKIILAQTS--------NRKITGLFSATIPEE 173 (337)
T ss_dssp HHHHHHHHHHCT--------TCSEEEEEESCCCHH
T ss_pred HHHHHHHHhhCC--------cccEEEEEeCcCCHH
Confidence 999999988776 578999999999877
No 30
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-30 Score=282.68 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=162.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
...|..+++++.+...+...++..|+++|.++|+++..|+|+|++||||||||++|++|++..+. .+.++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----------~g~rv 230 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRV 230 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----------TTCEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----------cCCeE
Confidence 34678888888877777777777899999999999999999999999999999999999999875 36799
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
||++||++|+.|+++.+..+.. .+++++|+... ...++|+|+||++|.+++.++...+.++++||||||
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEV 299 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhh
Confidence 9999999999999999988754 57778887763 345899999999999999988777889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhh
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLER 351 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~ 351 (397)
|+|++++|+..+..++..++ .++|+|+||||+++..++..|+..
T Consensus 300 H~l~d~~rg~~~e~ii~~l~--------~~~qvl~lSATipn~~e~a~~l~~ 343 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLP--------DKVRYVFLSATIPNAMEFAEWICK 343 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSC--------TTSEEEEEECSCSSCHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHhcC--------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 99999999999999999886 589999999999999889988875
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=4.4e-29 Score=266.33 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=168.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceE
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~l 220 (397)
+|++++|++.+.+.+.++||..|+++|.++|+. +..|++++++||||||||++|.++++..+... +.++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---------~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ---------GGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---------CSEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---------CCEEE
Confidence 599999999999999999999999999999998 88999999999999999999999999888742 57999
Q ss_pred EEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 221 vl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
|++|+++|+.|+++.++.+.. .+++++.++|+...... ....++|+|+||+++..++.+....+.++++|||||||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 999999999999998865544 48899999997765432 12358999999999999988876668899999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 301 ~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
++.+++++..+..++..++ .++|+|++|||+++..++..|+...
T Consensus 149 ~l~~~~r~~~~~~ll~~l~--------~~~~ii~lSATl~n~~~~~~~l~~~ 192 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHML--------GKAQIIGLSATIGNPEELAEWLNAE 192 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHB--------TTBEEEEEECCCSCHHHHHHHTTEE
T ss_pred ccCCCcccHHHHHHHHHhh--------cCCeEEEEcCCcCCHHHHHHHhCCc
Confidence 9998899999999999886 3789999999999999999998753
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.3e-28 Score=262.58 Aligned_cols=191 Identities=19% Similarity=0.270 Sum_probs=168.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~-i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
..+|++++|++++.+.+..+||..|+++|.++|+. +..|++++++||||||||++|.++++..+.. .+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 77 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGGK 77 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCSE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCCe
Confidence 35799999999999999999999999999999999 7889999999999999999999999998764 3679
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+||++|+++|+.|++..++.+.. .+++++.++|+...... .+ ..++|+|+||+++..++.+....+.++++|||||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 99999999999999998865543 48899999998765442 22 3589999999999999988766689999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
||.+.+.+++..++.++.+++ ++|+|++|||++|..+++.|+...
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n~~~~~~~l~~~ 198 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK---------RRNLLALSATISNYKQIAKWLGAE 198 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTTHHHHHHHHTCE
T ss_pred hhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCCHHHHHHHhCCC
Confidence 999988889999999998886 689999999999999999999753
No 33
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=3.4e-29 Score=266.50 Aligned_cols=192 Identities=16% Similarity=0.240 Sum_probs=165.6
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 142 SFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 142 ~f~~l~--l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
+|++++ |++.+.+.+.++||..|+++|.++++.+..|++++++||||||||++|.++++..+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcE
Confidence 588999 9999999999999999999999999999999999999999999999999999988753 5689
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
||++|+++|+.|+++.++.+. ..+++++.++|+...... ....++|+|+||+++..++.+....+.++++||||||
T Consensus 72 l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 999999999999999886544 348899999998765432 1236899999999999999887666889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
|.+.+++++..+..++..+.... +++|+|++|||+++..+++.|+...
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~-----~~~~ii~lSATl~n~~~~~~~l~~~ 195 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMN-----KALRVIGLSATAPNVTEIAEWLDAD 195 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHC-----TTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred eecCCCCcccHHHHHHHHHHhcC-----cCceEEEECCCcCCHHHHHHHhCCC
Confidence 99998899999999999886433 5799999999999999999998743
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.8e-28 Score=244.62 Aligned_cols=187 Identities=16% Similarity=0.176 Sum_probs=148.3
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHH
Q 015946 151 EMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (397)
Q Consensus 151 ~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa 229 (397)
.+.+.+.+ +|| .|+++|.++|+.++.|+|++++||||||||++|++|++..+. .++++|||+||++|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----------CCCEEEEEECCHHHH
Confidence 45556665 477 899999999999999999999999999999999999888762 478999999999999
Q ss_pred HHHHHHHHHhhhcCCcceeeecCCCCh---HHHHHHhcCC-ccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccc--
Q 015946 230 DQGFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-- 303 (397)
Q Consensus 230 ~Qv~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l-- 303 (397)
.|+++.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999887 78999999999987 4444555444 99999999999988875 667799999999997654
Q ss_pred --------c-CCCHHH-HHHHHHHhhhh---hhccCCCCceEEEEeccC-CCC--hhHHHhhhh
Q 015946 304 --------D-RGFGPE-ISKILNPLKDS---ALKSNGQGFQTILVTAAI-AEL--SSLMECLER 351 (397)
Q Consensus 304 --------~-~~f~~~-l~~il~~l~~~---~~~~~~~~~q~i~~SATl-~~~--~~l~~~l~~ 351 (397)
+ .+|.+. +..++..++.. ..-....++|++++|||+ +.. ..+...+..
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 4 778777 78888877510 000111478999999994 444 344444443
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=7.9e-28 Score=250.63 Aligned_cols=190 Identities=18% Similarity=0.270 Sum_probs=152.6
Q ss_pred cccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCC
Q 015946 139 VVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 217 (397)
..+.|.++++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++. ..+
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------------~~g 85 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------------SDG 85 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------SSS
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------cCC
Confidence 34556678999999999998 6999999999999999999999999999999999999999975 245
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH------hcCCccEEEeChHHHH------HHHhcCC
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV------SNAPIGMLIATPSEVL------QHIEDRN 285 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~------~~~~~~IlV~TP~~L~------~~l~~~~ 285 (397)
++|||+|+++|+.|+...+..+ ++.+..++|+......... ....++|+|+||++|. +++.. .
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~ 160 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-A 160 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-H
T ss_pred cEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-h
Confidence 8999999999999999988886 7888899998877655433 2456899999999874 22322 3
Q ss_pred CCCCCcceEEEcCCCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhc
Q 015946 286 VSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERD 352 (397)
Q Consensus 286 ~~l~~l~~lVlDEah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~ 352 (397)
..+.++.+|||||||++.+|| |.+.+..+- .+.... +++|+|+||||+++. .++..++...
T Consensus 161 ~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~-~l~~~~-----~~~~ii~lSAT~~~~v~~~i~~~l~~~ 225 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCSQWGHDFRPDYKALG-ILKRQF-----PNASLIGLTATATNHVLTDAQKILCIE 225 (591)
T ss_dssp HHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG-HHHHHC-----TTSEEEEEESSCCHHHHHHHHHHTTCC
T ss_pred hhccCCcEEEEECcccccccccccHHHHHHHH-HHHHhC-----CCCcEEEEecCCCHHHHHHHHHHhCCC
Confidence 456789999999999999998 888776521 111111 578999999999977 5555565543
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.95 E-value=7.6e-28 Score=246.94 Aligned_cols=195 Identities=22% Similarity=0.349 Sum_probs=141.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCC
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 216 (397)
....|...++++.+++.+.+.||..|+++|.++|+.++.| +++++++|||||||++|+++++..+... ..+
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------~~~ 189 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------VPK 189 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-------CCS
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-------CCC
Confidence 3556777889999999999999999999999999999998 9999999999999999999999987542 246
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
+++|||+|+++|+.|+++.+..+....++.+...+++..... ....++|+|+||++|++++....+.+.++++|||
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 799999999999999999999998777777666665543322 2336899999999999999988888999999999
Q ss_pred cCCCcccc-CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC-hhHHHhhhhc
Q 015946 297 DEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL-SSLMECLERD 352 (397)
Q Consensus 297 DEah~~l~-~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~-~~l~~~l~~~ 352 (397)
||||++.+ .+|...+..++..++ .++|+|++|||+++. ..+..++...
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~ 315 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLP--------RNTQIVLFSATFSERVEKYAERFAPN 315 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSC--------TTCEEEEEESCCSTHHHHHHHHHSTT
T ss_pred echhhhcccCCcHHHHHHHHHhCC--------cCCeEEEEeCCCCHHHHHHHHHhcCC
Confidence 99999987 578999988888876 578999999999986 5666666544
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=2.7e-27 Score=243.58 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=153.7
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCce
Q 015946 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~ 219 (397)
..|++++|++.+.+.|++ +||..|+++|.++|+.++.|+|+++++|||+|||++|++|++. ....+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-------------~~g~~ 68 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL-------------LNGLT 68 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH-------------SSSEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH-------------hCCCE
Confidence 579999999999999998 8999999999999999999999999999999999999999984 24579
Q ss_pred EEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHH----HhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 220 lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
|||+|+++|+.|+...+..+ ++.+..++|+........ .....++|+|+||++|........+...++.+||
T Consensus 69 lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred EEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 99999999999998888775 678888888877655432 2345689999999999643222233457899999
Q ss_pred EcCCCccccCC--CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhc
Q 015946 296 LDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERD 352 (397)
Q Consensus 296 lDEah~~l~~~--f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~ 352 (397)
|||||++.++| |.+.+..+...... . ++.+++++|||+++. .++..++...
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~-~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQR-F-----PTLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHH-C-----TTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHh-C-----CCCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 99999999987 77777655433221 1 478999999999987 6677777543
No 38
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=1.2e-26 Score=239.00 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=138.7
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
++...|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.+..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999887642 12377899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCCCHHHHHHHHHH
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 317 (397)
+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.++++... ++..
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~---~~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV---LMTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHH---HHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHH---HHHH
Confidence 988889999999999877766666666689999999999999998877 789999999999999987774333 2222
Q ss_pred hhhhhhccCCCCceEEEEeccCCCC--hhHHHh
Q 015946 318 LKDSALKSNGQGFQTILVTAAIAEL--SSLMEC 348 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~ 348 (397)
+.........+.+|+|+||||++.. .++..|
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~ 187 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEET 187 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHH
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHH
Confidence 2111111123578999999999643 444443
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=7.1e-26 Score=232.76 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=142.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.+..+...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999887642 123778999999999999999999999888
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCCCHHHHHHHH-HHhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKIL-NPLKD 320 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~~il-~~l~~ 320 (397)
.++.+..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.+. +..++ ..+..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHHHHh
Confidence 89999999999877666555656689999999999999988777 789999999999999987762 22222 22222
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
......++.+|++++|||++..
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~ 177 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVG 177 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCT
T ss_pred hhccccCCCCeEEEEecCcccC
Confidence 2222334678999999999764
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=7.8e-26 Score=239.95 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=142.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH
Q 015946 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (397)
Q Consensus 153 ~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv 232 (397)
..++..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999887642 12347899999999999999
Q ss_pred HHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCCCHHHH
Q 015946 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEI 311 (397)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l 311 (397)
.+.+..+....++++..++|+.....+...+..+++|+|+||++|++++..+.+ .+.++++|||||||++.+.. .+
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~---~~ 154 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH---PY 154 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---HH
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---cH
Confidence 999999988889999999999876555555555689999999999999998776 78999999999999997554 22
Q ss_pred HHHHH-HhhhhhhccCCCCceEEEEeccCCC
Q 015946 312 SKILN-PLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 312 ~~il~-~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
..++. .+.........+.+|+|+||||+..
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~~ 185 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 185 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCcccc
Confidence 22222 2221111223357899999999984
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=6.4e-26 Score=250.56 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=148.3
Q ss_pred HHHHHH-HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHH
Q 015946 152 MIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (397)
Q Consensus 152 l~~~l~-~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~ 230 (397)
+.+.+. .+|| .|+++|.++|+.++.|+|++++||||||||++|+++++..+. .++++|||+||++|+.
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----------~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----------TTCCEEEEESSHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----------cCCeEEEEechHHHHH
Confidence 334443 4788 699999999999999999999999999999999888887762 4789999999999999
Q ss_pred HHHHHHHHhhhcCCcceeeecCCCCh---HHHHHHhcCC-ccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc-----
Q 015946 231 QGFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT----- 301 (397)
Q Consensus 231 Qv~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~----- 301 (397)
|+++.+..++ ..+++++.++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||+
T Consensus 136 Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~ 212 (1104)
T 4ddu_A 136 QTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKAS 212 (1104)
T ss_dssp HHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSS
T ss_pred HHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcccccc
Confidence 9999999987 778999999999987 5556666665 99999999999998875 5678999999999965
Q ss_pred -----ccc-CCCHHH-HHHHHHHhhh--h-hhccCCCCceEEEEeccC-CCC--hhHHHhhhh
Q 015946 302 -----LFD-RGFGPE-ISKILNPLKD--S-ALKSNGQGFQTILVTAAI-AEL--SSLMECLER 351 (397)
Q Consensus 302 -----~l~-~~f~~~-l~~il~~l~~--~-~~~~~~~~~q~i~~SATl-~~~--~~l~~~l~~ 351 (397)
|++ +||... +..++..++. . ..-....+.|+++||||+ +.. ..+...+..
T Consensus 213 r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 213 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred ccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 445 888888 8889988761 0 000111478999999995 444 234444433
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=8.3e-26 Score=258.06 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=159.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~-g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
|.+...+++...+|.+++|+|.++|+.++. ++|++++||||||||++|.+|++..+... .+.++|||+|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~--------~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS--------SEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------TTCCEEEECSCH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------CCCEEEEEcChH
Confidence 456777888888999999999999999975 56899999999999999999999998764 356899999999
Q ss_pred hHHHHHHHHHHH-hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC--CCCCcceEEEcCCCccc
Q 015946 227 ESADQGFHMAKF-ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRYVVLDEADTLF 303 (397)
Q Consensus 227 eLa~Qv~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~--~l~~l~~lVlDEah~~l 303 (397)
+||.|+++.+.. ++...+++|+.++|+...... ....++|+|||||++..+++++.. .+++|++||+||+|.|.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 999999998864 666779999999998654332 223479999999999777766433 37899999999999776
Q ss_pred cCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 304 ~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
+ .++..++.++.++.... ...+.++|+|+||||++|..++++||....
T Consensus 1060 d-~rg~~le~il~rl~~i~-~~~~~~~riI~lSATl~N~~dla~WL~~~~ 1107 (1724)
T 4f92_B 1060 G-ENGPVLEVICSRMRYIS-SQIERPIRIVALSSSLSNAKDVAHWLGCSA 1107 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHH-HTTSSCCEEEEEESCBTTHHHHHHHHTCCS
T ss_pred C-CCCccHHHHHHHHHHHH-hhcCCCceEEEEeCCCCCHHHHHHHhCCCC
Confidence 5 58999999988886433 233468999999999999999999997653
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=4.3e-26 Score=260.40 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=152.9
Q ss_pred CCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCC-CCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~-~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
||.+++++|.++++.++ .++|+|++||||||||++|.++++..+.+...... ....+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999877 57899999999999999999999999976533211 13357799999999999999999998
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC--CCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~--~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
......|++|..++|+...... ....++|+|+|||++..++.+... .++++++|||||+|.+. ..+|..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~-d~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH-DDRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG-STTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC-CccHHHHHHHH
Confidence 8888889999999999875432 123589999999998555554332 37899999999999664 46899999888
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
.++.+.. ...+.++|+|++|||++|..++++||...
T Consensus 232 ~rl~~~~-~~~~~~~riI~LSATl~N~~dvA~wL~~~ 267 (1724)
T 4f92_B 232 ARAIRNI-EMTQEDVRLIGLSATLPNYEDVATFLRVD 267 (1724)
T ss_dssp HHHHHHH-HHHTCCCEEEEEECSCTTHHHHHHHTTCC
T ss_pred HHHHHHH-HhCCCCCcEEEEecccCCHHHHHHHhCCC
Confidence 7765322 12236899999999999999999999764
No 44
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=203.36 Aligned_cols=175 Identities=16% Similarity=0.071 Sum_probs=124.5
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH-HHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAK 237 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q-v~~~~~ 237 (397)
.+...|+++|.++++.++.|+++++++|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34558999999999999999999999999999999999999988765421 1246789999999999999 667777
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCC------CCCCCcceEEEcCCCccccCCCHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN------VSCDDIRYVVLDEADTLFDRGFGPEI 311 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~------~~l~~l~~lVlDEah~~l~~~f~~~l 311 (397)
.+... ++.+..++|+.........+...++|+|+||++|..++.... ..+.++++|||||||++.+.++...+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 77654 778888888776554443444458999999999999987743 56788999999999999877665554
Q ss_pred H-HHHHHh-hhhh----hccCCCCceEEEEecc
Q 015946 312 S-KILNPL-KDSA----LKSNGQGFQTILVTAA 338 (397)
Q Consensus 312 ~-~il~~l-~~~~----~~~~~~~~q~i~~SAT 338 (397)
. .++... .... .....+.+++|+||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 332222 1110 1122357899999998
No 45
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-25 Score=243.63 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=147.2
Q ss_pred HHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 156 l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
...++|. |+++|.++|+.+..|++++++||||||||++|.++++..+. .+.++||++||++|+.|+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHH
Confidence 3456785 99999999999999999999999999999999999998774 367999999999999999999
Q ss_pred HHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 236 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
+..+.. .++.++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.+++++..+..++
T Consensus 149 l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 149 LLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 988654 677888877643 357999999999999998887888999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhh
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAELSSLMECLER 351 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~ 351 (397)
..++ .++|+|+||||+++..+++.|+..
T Consensus 218 ~~l~--------~~~~il~LSATi~n~~e~a~~l~~ 245 (1010)
T 2xgj_A 218 ILLP--------DKVRYVFLSATIPNAMEFAEWICK 245 (1010)
T ss_dssp HHSC--------TTCEEEEEECCCTTHHHHHHHHHH
T ss_pred HhcC--------CCCeEEEEcCCCCCHHHHHHHHHh
Confidence 8886 588999999999999999999863
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=3.1e-25 Score=239.15 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=138.9
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
-+|+..|+++|.++|+.++.|+|+|+++|||+|||++|++|++..+.... ...++++|||+||++|+.|++..++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999987642 1237799999999999999999999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCCCHHHHHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~~il~ 316 (397)
.+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.+. +..++.
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~ 394 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 394 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHH
Confidence 9988889999999999977766666666799999999999999998777 789999999999999987653 333333
Q ss_pred HhhhhhhccCCCCceEEEEeccCCC
Q 015946 317 PLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
.+.........+.+|+|++|||++.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccc
Confidence 3322211223467899999999964
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=2e-25 Score=244.52 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=147.1
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.++| .|+++|.++|+.++.|+|++++||||||||++|++++...+. .+.++||++||++|+.|+++.+.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 4577 589999999999999999999999999999999999887654 36789999999999999999888
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHH
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~ 317 (397)
.+.. ++.++.++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|+..+..++..
T Consensus 104 ~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 104 ETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 7543 67888999987533 34799999999999999888777899999999999999999999999999988
Q ss_pred hhhhhhccCCCCceEEEEeccCCCChhHHHhhhhc
Q 015946 318 LKDSALKSNGQGFQTILVTAAIAELSSLMECLERD 352 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~ 352 (397)
++ +++|+|++|||+++..++..|+...
T Consensus 175 l~--------~~v~iIlLSAT~~n~~ef~~~l~~~ 201 (997)
T 4a4z_A 175 LP--------QHVKFILLSATVPNTYEFANWIGRT 201 (997)
T ss_dssp SC--------TTCEEEEEECCCTTHHHHHHHHHHH
T ss_pred cc--------cCCCEEEEcCCCCChHHHHHHHhcc
Confidence 86 5789999999999999999999754
No 48
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=206.94 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 148 l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
.++.+.+.+...+...++++|.++++.+..|++++++|+||||||++|.++++..+.... ...++++|+++|+++
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-----~~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-----RAAECNIVVTQPRRI 120 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-----CGGGCEEEEEESSHH
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-----CCCceEEEEeccchH
Confidence 344445555555555689999999999999999999999999999999999998776532 123568999999999
Q ss_pred HHHHHHHHHHHhhh-cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc-ccC
Q 015946 228 SADQGFHMAKFISH-CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL-FDR 305 (397)
Q Consensus 228 La~Qv~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~-l~~ 305 (397)
|+.|+.+.+..... ..+..++....... .....+++|+|||||+|++++.. .+.++++|||||||.+ ++.
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH
T ss_pred HHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch
Confidence 99999877755432 22333332211110 01124578999999999999976 4899999999999986 666
Q ss_pred CCH-HHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhccC
Q 015946 306 GFG-PEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDNA 354 (397)
Q Consensus 306 ~f~-~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~~ 354 (397)
+|. ..+..++... ++.|+++||||+++.. +.++|...++
T Consensus 193 ~~~~~~l~~i~~~~---------~~~~~il~SAT~~~~~-~~~~~~~~pv 232 (235)
T 3llm_A 193 DFLLVVLRDVVQAY---------PEVRIVLMSATIDTSM-FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHC---------TTSEEEEEECSSCCHH-HHHHTTSCCC
T ss_pred HHHHHHHHHHHhhC---------CCCeEEEEecCCCHHH-HHHHcCCCCE
Confidence 665 3455555443 4789999999999875 8888876654
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.93 E-value=1.3e-25 Score=247.75 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=147.5
Q ss_pred HHHHH-HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 153 IKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 153 ~~~l~-~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.+.+. .+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++|+.|
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccHHHHHH
Confidence 34444 47999 9 9999999999999999999999999998 99999988765 47899999999999999
Q ss_pred HHHHHHHhhhcCCc----ceeeecCCCChHHH---HHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcccc
Q 015946 232 GFHMAKFISHCARL----DSSMENGGVSSKAL---EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 232 v~~~~~~~~~~~~~----~v~~~~g~~~~~~~---~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~ 304 (397)
+++.++.+....++ ++++++|+.+...+ ...+.+ ++|+|+||++|++++.+ +.++++|||||||+|++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 99999999988888 89999999887764 344455 99999999999998876 67999999999999987
Q ss_pred CCCHHHHHHHHHHhhhhh---hccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 305 RGFGPEISKILNPLKDSA---LKSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 305 ~~f~~~l~~il~~l~~~~---~~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
|+..+..++..+.... .......+|+++||||+++...+..++.
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~ 236 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHh
Confidence 6788888888774210 0111246899999999998854444443
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=1.7e-25 Score=235.81 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=139.0
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.+|| .||++|..++|.++.|+ |+.++||+|||++|++|++...+ .++.++||+||++||.|++..+.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL----------~g~~vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 4799 99999999999999999 99999999999999999985443 35689999999999999999999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc-cCC---
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF-DRG--- 306 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l-~~~--- 306 (397)
.++..+|+++++++||.+...+... .+++|+||||++| .+++..+ .+.+..+.++||||||.|| |.+
T Consensus 146 ~l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 146 KIFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 9999999999999999886554333 3589999999999 6665432 3568999999999999998 764
Q ss_pred ------------CHHHHHHHHHHhhhh-hhccCCCCceEE-----------------EEeccCCC
Q 015946 307 ------------FGPEISKILNPLKDS-ALKSNGQGFQTI-----------------LVTAAIAE 341 (397)
Q Consensus 307 ------------f~~~l~~il~~l~~~-~~~~~~~~~q~i-----------------~~SATl~~ 341 (397)
|...+..|+..++.- ...-.....|++ +||||++.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 678888888887520 000112467887 89999874
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=3.2e-24 Score=234.55 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=136.8
Q ss_pred HHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~ 236 (397)
.-.|+..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+.... ...+.++|||+||++|+.|++..+
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999998776532 123678999999999999999999
Q ss_pred HHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCC-CCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
+.+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++...+. +..++
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i~ 393 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLM 393 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHHH
Confidence 99988889999999999876665555555689999999999999998766 788999999999999987652 34444
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
..+.........+.+|+++||||+..
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGV 419 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCC
T ss_pred HHHHHHhhccCCCcCeEEEecCCccc
Confidence 33332211223357899999999964
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=4.1e-24 Score=224.95 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=116.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|. .|+++|..+++.++.|+ |+.++||||||++|++|++.... .+++++||+||++||.|++..+..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 576 89999999999999998 99999999999999999996553 256899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc-cCC----
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF-DRG---- 306 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l-~~~---- 306 (397)
++..+++++++++||.+.... .+..+++|+||||++| .+++..+ .+.+.++.++||||||.|| |.+
T Consensus 138 l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 999999999999999886533 3334689999999999 7888754 2567999999999999999 543
Q ss_pred -----------CHHHHHHHHHHhh
Q 015946 307 -----------FGPEISKILNPLK 319 (397)
Q Consensus 307 -----------f~~~l~~il~~l~ 319 (397)
|...+..|+..++
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp EEEEC-------------------
T ss_pred cccCCCccchhHHHHHHHHHHhch
Confidence 6778888988886
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.90 E-value=1.2e-23 Score=221.89 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=140.8
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.+|+ .|+++|..+++.++.|+ |+.++||+|||++|++|++...+. +..++||+||++||.|++..+.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999865542 5589999999999999999999
Q ss_pred HhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc-cC----
Q 015946 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF-DR---- 305 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l-~~---- 305 (397)
.++..+|+++++++||.+....... .+|+|+||||++| .++|..+ .+.+..+.++||||||.|| |.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 9999999999999999886544333 3589999999999 7777654 3667899999999999999 43
Q ss_pred -----------CCHHHHHHHHHHhhhh-hhccCCCCceEE-----------------EEeccCCCC
Q 015946 306 -----------GFGPEISKILNPLKDS-ALKSNGQGFQTI-----------------LVTAAIAEL 342 (397)
Q Consensus 306 -----------~f~~~l~~il~~l~~~-~~~~~~~~~q~i-----------------~~SATl~~~ 342 (397)
+|...+..|+..++.. ...-.....|++ ++|||++..
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l 317 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPL 317 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCH
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhH
Confidence 5788999999988610 000112467888 999998763
No 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=4.2e-22 Score=199.96 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=133.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+..+...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 6999999999999999 99999999999999999999988763 4678999999999999999999887644
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
....+..++|+.......... ..++|+|+||+.|...+..+.+.+.++++|||||||++.+......+...+....
T Consensus 79 ~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~--- 154 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA--- 154 (494)
T ss_dssp CGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC---
T ss_pred chhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC---
Confidence 455888999988776544433 3479999999999999988888889999999999999976654444444433322
Q ss_pred hccCCCCceEEEEeccCCCC
Q 015946 323 LKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~ 342 (397)
...+++++|||+.+.
T Consensus 155 -----~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 155 -----KNPLVIGLTASPGST 169 (494)
T ss_dssp -----SSCCEEEEESCSCSS
T ss_pred -----CCCeEEEEecCCCCC
Confidence 578999999999865
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=220.74 Aligned_cols=175 Identities=17% Similarity=0.102 Sum_probs=131.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHH-HHHHHHhhh
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-FHMAKFISH 241 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv-~~~~~~~~~ 241 (397)
.|+++|.++++.++.|+|+|+++|||+|||++|++|++..+..... .+.+.++|||+|+++|+.|+ .+.+..+..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999998876432 11347899999999999999 999988876
Q ss_pred cCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHH------hcCCCCCCCcceEEEcCCCccccCC-CHHHHHHH
Q 015946 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI------EDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKI 314 (397)
Q Consensus 242 ~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l------~~~~~~l~~l~~lVlDEah~~l~~~-f~~~l~~i 314 (397)
. ++.+..++|+.........+...++|+|+||++|.+++ ....+.+.++++|||||||++...+ +...+..+
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp T-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred c-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 5 58899999998766555555567899999999999988 4455678899999999999986654 33333333
Q ss_pred HHH-hhhhh----hccCCCCceEEEEeccCCCC
Q 015946 315 LNP-LKDSA----LKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 315 l~~-l~~~~----~~~~~~~~q~i~~SATl~~~ 342 (397)
+.. +.... .....+.+|+|++|||++..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEeccccccc
Confidence 322 11100 01112467999999999974
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=1e-22 Score=193.09 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|+++|.++++.++.+++.++++|||+|||++++.++...+.. ...++|||+||++|+.|+.+.+..+...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 7999999999999988889999999999999998888876654 2448999999999999999999998776
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
.+..+..++|+..... ......+|+|+||+++.... ...+.++++||+||||++. ...+..++..+.
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~--- 250 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLN--- 250 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCT---
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhh---
Confidence 6677888888765432 22245799999999875432 2346788999999999985 356777777664
Q ss_pred hccCCCCceEEEEeccCCCCh
Q 015946 323 LKSNGQGFQTILVTAAIAELS 343 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~~ 343 (397)
...+++++|||+++..
T Consensus 251 -----~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 251 -----NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp -----TCCEEEEECSSCCTTS
T ss_pred -----cCCeEEEEeCCCCCcc
Confidence 4789999999998873
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=3.8e-22 Score=212.87 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=130.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 150 ~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g------~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
..+.+.+..+|| .||++|.++|+.++.+ +|++++|+||||||++|++|++..+.. +.+++|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvla 424 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMV 424 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEEC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEe
Confidence 344555678999 8999999999998865 599999999999999999999998764 67999999
Q ss_pred CchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---h-cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCC
Q 015946 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 224 PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 299 (397)
||++|+.|+++.+..+....++++..++|+......... + .+.++|+||||+.+.+ .+.+.++++|||||+
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESC
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEeccc
Confidence 999999999999999988889999999999887664332 3 3458999999998754 456889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 300 h~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
|++.... .. .+. ....++|+++||||..+.
T Consensus 500 Hr~g~~q-----r~---~l~-----~~~~~~~vL~mSATp~p~ 529 (780)
T 1gm5_A 500 HRFGVKQ-----RE---ALM-----NKGKMVDTLVMSATPIPR 529 (780)
T ss_dssp CCC----------C---CCC-----SSSSCCCEEEEESSCCCH
T ss_pred chhhHHH-----HH---HHH-----HhCCCCCEEEEeCCCCHH
Confidence 9862111 11 111 112478999999997654
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.86 E-value=1.1e-21 Score=200.61 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=128.1
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
...|+++|.++++.++.+++++++++||+|||++|++++...+.. .+.++|||+||++|+.|+++.+..+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 348999999999999999999999999999999999999887764 34599999999999999999999887
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
...+..+..++|+.....+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.
T Consensus 182 ~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~- 250 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN- 250 (510)
T ss_dssp SSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT-
T ss_pred cCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc-
Confidence 7667788888888776554 456689999999976432 334567899999999999854 45666666553
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++++||||+++.
T Consensus 251 -------~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 251 -------NCMFKFGLSGSLRDG 265 (510)
T ss_dssp -------TCCEEEEEESCGGGC
T ss_pred -------cCcEEEEEEeCCCCC
Confidence 467999999999766
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=6.4e-22 Score=199.96 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=115.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVLNGKSV-VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~~g~dv-lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
|+..++|+|+ +||.++.|+++ +++||||||||++|++|++..+.. .++++||++||++|+.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhc-
Confidence 7889999986 79999999887 999999999999999999988765 46799999999999999988764
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
++.+....+.... ....+..|.++|++.+.+.+... ..+.++++|||||||++ +.++...+..+....
T Consensus 70 -----g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 70 -----GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 3333322221111 11234579999999998888654 55789999999999977 444444443343322
Q ss_pred hhhhhccCCCCceEEEEeccCCCC
Q 015946 319 KDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
. .+++|+|+||||++..
T Consensus 138 ~-------~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 138 E-------MGEAAAIFMTATPPGS 154 (451)
T ss_dssp H-------TTSCEEEEECSSCTTC
T ss_pred c-------CCCceEEEEccCCCcc
Confidence 1 2578999999999875
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=6.6e-20 Score=203.68 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhC----CC--cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 146 LGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLN----GK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 146 l~l~~~l~~~l~-~~g~~~~~~iQ~~ai~~i~~----g~--dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
++++....+.+. .+||. +|++|.++|+.++. |+ |+|++++||+|||++|+++++..+. .+.+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~ 654 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQ 654 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCe
Confidence 345555555554 46885 79999999999886 66 9999999999999999999887654 3669
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH---hc-CCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---SN-APIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~-~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
++||+||++|+.|+++.+..+....++++..++|.......... +. +.++|+||||+.|. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 99999999999999999988777778889988887766554332 33 35999999997652 34668999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 295 VlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
||||+|++ +.....++..+. .++++++||||+.+.
T Consensus 730 IiDEaH~~-----g~~~~~~l~~l~--------~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 730 IVDEEHRF-----GVRHKERIKAMR--------ANVDILTLTATPIPR 764 (1151)
T ss_dssp EEESGGGS-----CHHHHHHHHHHH--------TTSEEEEEESSCCCH
T ss_pred EEechHhc-----ChHHHHHHHHhc--------CCCCEEEEcCCCChh
Confidence 99999984 445566666665 578999999998655
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.84 E-value=5.3e-22 Score=207.52 Aligned_cols=170 Identities=13% Similarity=0.064 Sum_probs=125.5
Q ss_pred ccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEE
Q 015946 143 FQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (397)
Q Consensus 143 f~~-l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lv 221 (397)
|.. +++++.+.+++... ...++|+|+.+++.++.|+|++++||||||||++|++|+++.+.. .++++||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLv 220 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLI 220 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEE
Confidence 444 66777776666554 578999998899999999999999999999999999999998875 4679999
Q ss_pred EcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 222 l~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
|+|||+||.|+++.+. ++.+.. .+... . .....+..|.++|.+.+...+... ..+.++++|||||||+
T Consensus 221 l~PtreLa~Qi~~~l~------~~~v~~-~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~ 288 (618)
T 2whx_A 221 LAPTRVVAAEMEEALR------GLPIRY-QTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHF 288 (618)
T ss_dssp EESSHHHHHHHHHHTT------TSCEEE-CCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTC
T ss_pred EcChHHHHHHHHHHhc------CCceeE-ecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCC
Confidence 9999999999988765 233331 11110 0 011223456677888877666544 4588999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 302 ~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
| +.+|...+..|+..++. .++|+|+||||+++.
T Consensus 289 ~-~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 289 T-DPCSVAARGYISTRVEM-------GEAAAIFMTATPPGS 321 (618)
T ss_dssp C-SHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTC
T ss_pred C-CccHHHHHHHHHHHhcc-------cCccEEEEECCCchh
Confidence 8 67788899888888753 478999999999877
No 62
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=1e-20 Score=199.02 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=114.2
Q ss_pred CCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
+|+ .|+++|..+++.++.|+ |+++.||+|||++|++|++..... +.+++||+||++||.|.+..+..
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 799 99999999999999998 999999999999999999755442 55899999999999999999999
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHH-HHHHhcCC------CCCC---CcceEEEcCCCccc
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCD---DIRYVVLDEADTLF 303 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L-~~~l~~~~------~~l~---~l~~lVlDEah~~l 303 (397)
+...+++++++++||.+....... .+++|+||||++| ++++..+. +.+. .+.++||||+|.||
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999999885443333 3589999999999 88887653 4577 89999999999886
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=9.5e-20 Score=184.58 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.|+++|.++++.++.+++++++++||+|||++|+.++... +.++|||||+++|+.|+.+.+..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~--- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF--- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999999999999999999999999988753 458999999999999998887774
Q ss_pred CCcc-eeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015946 243 ARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (397)
Q Consensus 243 ~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~ 321 (397)
++. +..++|+... ..+|+|+||+.+...+... ..++++|||||||++.+.+|.. ++..+
T Consensus 157 -~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~--- 216 (472)
T 2fwr_A 157 -GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS--- 216 (472)
T ss_dssp -CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC---
T ss_pred -CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc---
Confidence 677 8888887543 4789999999998776531 2458999999999998877653 44444
Q ss_pred hhccCCCCceEEEEeccCCCC
Q 015946 322 ALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++|++|||+.+.
T Consensus 217 ------~~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 217 ------IAPFRLGLTATFERE 231 (472)
T ss_dssp ------CCSEEEEEESCCCCT
T ss_pred ------CCCeEEEEecCccCC
Confidence 367899999999854
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=2.9e-19 Score=165.27 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
..|+++|.+++..++.++++++++|||+|||++++.++.. .+.++||++|+++|+.|..+.+..+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-------------~~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------LSTPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-------------SCSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-------------cCCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3799999999999999999999999999999999887754 2457999999999999988887763
Q ss_pred cCCcc-eeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 242 CARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 242 ~~~~~-v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
++. +..+.|+... ..+|+|+|++.+...+..- ...+++|||||||++.+..|. .++..+
T Consensus 157 --~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-- 216 (237)
T 2fz4_A 157 --GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-- 216 (237)
T ss_dssp --CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC--
T ss_pred --CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc--
Confidence 667 7777776542 4689999999987766531 245899999999999765543 344444
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++|+||||..+.
T Consensus 217 -------~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 -------IAPFRLGLTATFERE 231 (237)
T ss_dssp -------CCSEEEEEEESCC--
T ss_pred -------cCCEEEEEecCCCCC
Confidence 367899999998866
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.81 E-value=8e-21 Score=198.20 Aligned_cols=147 Identities=13% Similarity=0.040 Sum_probs=116.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.++..|..+++.+..+++++++||||||||++|.+|+++ .+.++||++|||+||.|+++.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~--- 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKA--- 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHH---
Confidence 344566666666778899999999999999999999875 3568999999999999998865443
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
.+..+...+|+.. ...+++|+|+||++| +.+..+.+.++++||||||| +++.+|...+..|++.++..
T Consensus 281 ~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~- 348 (666)
T 3o8b_A 281 HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA- 348 (666)
T ss_dssp HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT-
T ss_pred hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc-
Confidence 3556667777644 356789999999997 45667788999999999996 66788888899999888631
Q ss_pred hccCCCCceEEEEeccCCCC
Q 015946 323 LKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~ 342 (397)
....++++|||+++.
T Consensus 349 -----~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 349 -----GARLVVLATATPPGS 363 (666)
T ss_dssp -----TCSEEEEEESSCTTC
T ss_pred -----CCceEEEECCCCCcc
Confidence 133478889999986
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.81 E-value=7e-20 Score=196.03 Aligned_cols=192 Identities=11% Similarity=0.124 Sum_probs=134.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCC
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~-~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~ 217 (397)
+...|.++++++.+.+.+...| ..|+++|+.+|+.++ .|++++++||||||||+ ++|++....... .+.+.
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~-----~~~g~ 141 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP-----HLENT 141 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG-----GGGTC
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc-----cCCCc
Confidence 4678999999999999999998 789999999998876 45689999999999999 466652221110 11256
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEc
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 297 (397)
+++|++|+++|+.|++..+... .+..+...+|...... .......+|+|+|||++.+.+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFE--NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTE--EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceeccc--cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 7999999999999988755432 2333333333211000 012345789999999999887764 458999999999
Q ss_pred CCCc-cccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCChhHHHhhhhcc
Q 015946 298 EADT-LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELSSLMECLERDN 353 (397)
Q Consensus 298 Eah~-~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~~l~~~l~~~~ 353 (397)
|+|. +++.. .+..++..+.... ++.|+|+||||++ ...+..++...+
T Consensus 216 Eah~R~ld~d---~~~~~l~~l~~~~-----~~~~iIl~SAT~~-~~~l~~~~~~~~ 263 (773)
T 2xau_A 216 EAHERTLATD---ILMGLLKQVVKRR-----PDLKIIIMSATLD-AEKFQRYFNDAP 263 (773)
T ss_dssp SGGGCCHHHH---HHHHHHHHHHHHC-----TTCEEEEEESCSC-CHHHHHHTTSCC
T ss_pred CccccccchH---HHHHHHHHHHHhC-----CCceEEEEecccc-HHHHHHHhcCCC
Confidence 9995 55433 2222333332222 4789999999994 567787776544
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.79 E-value=2.9e-21 Score=203.49 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=105.8
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCc
Q 015946 155 AVEKMGLF-----VPSEIQC-----VGIPAVL------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (397)
Q Consensus 155 ~l~~~g~~-----~~~~iQ~-----~ai~~i~------~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~ 218 (397)
++..+||. +|+++|+ .+|+.++ .|+|+|++||||||||++|++|++..+.. .+++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~ 272 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLR 272 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCc
Confidence 45566777 8999999 9999888 89999999999999999999999998765 4679
Q ss_pred eEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcC
Q 015946 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 219 ~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 298 (397)
+|||+||++||.|+++.+..+ + +....+... .....+.-+-+.+.+.+...+... ..+.++++|||||
T Consensus 273 ~lilaPTr~La~Q~~~~l~~~----~--i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDE 340 (673)
T 2wv9_A 273 TAVLAPTRVVAAEMAEALRGL----P--VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDE 340 (673)
T ss_dssp EEEEESSHHHHHHHHHHTTTS----C--CEECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEES
T ss_pred EEEEccHHHHHHHHHHHHhcC----C--eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeC
Confidence 999999999999998877643 1 211111000 000001112223333333333322 4689999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 299 ah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
||++ +..+...+..+...+.. ..+|+|+||||++..
T Consensus 341 aH~~-~~~~~~~~~~l~~~~~~-------~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 341 AHFT-DPASIAARGYIATRVEA-------GEAAAIFMTATPPGT 376 (673)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTC
T ss_pred Cccc-CccHHHHHHHHHHhccc-------cCCcEEEEcCCCChh
Confidence 9998 23333344444443321 478999999999876
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.78 E-value=4.4e-20 Score=185.92 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=97.3
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCC
Q 015946 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~ 253 (397)
++++|+|++++||||||||++|++|+++.+.. .++++||++||++||.|+++.+..+ .+....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEeccc
Confidence 35689999999999999999999999998765 4679999999999999999877633 22221111
Q ss_pred CChHHHHHHhcCCccEEEeChHHHHHHHhcC--------CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhcc
Q 015946 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 325 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~ 325 (397)
. -.|+||+++++++..+ ...+.++++|||||||++ +.+|...+..+...+.
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~------ 127 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR------ 127 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH------
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc------
Confidence 0 0377887776544332 234899999999999998 4445544444444433
Q ss_pred CCCCceEEEEeccCCCC
Q 015946 326 NGQGFQTILVTAAIAEL 342 (397)
Q Consensus 326 ~~~~~q~i~~SATl~~~ 342 (397)
..++|+++||||+++.
T Consensus 128 -~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 128 -ANESATILMTATPPGT 143 (440)
T ss_dssp -TTSCEEEEECSSCTTC
T ss_pred -cCCceEEEEeCCCCch
Confidence 1478999999999876
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.76 E-value=2.2e-18 Score=179.62 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH-HHH
Q 015946 163 VPSEIQCVGIPAVLN----G-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMA 236 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~----g-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~-~~~ 236 (397)
.|+++|.++++.++. | ++++++++||||||++++ +++..+............++++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 569999999999999964 455555443211111225789999999999999988 655
Q ss_pred HHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhc----CCCCCCCcceEEEcCCCccccCCCHHHHH
Q 015946 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED----RNVSCDDIRYVVLDEADTLFDRGFGPEIS 312 (397)
Q Consensus 237 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~----~~~~l~~l~~lVlDEah~~l~~~f~~~l~ 312 (397)
..++ ..+..+.++ ......+|+|+||++|..++.. ..+....+++|||||||++...+ ...+.
T Consensus 257 ~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5443 334444332 2334579999999999887652 34556789999999999986543 35567
Q ss_pred HHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 313 KILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.++..++ +.++|+||||....
T Consensus 324 ~il~~~~---------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 324 EILEYFE---------PAFQIGMTATPLRE 344 (590)
T ss_dssp HHHHHST---------TSEEEEEESSCSCT
T ss_pred HHHHhCC---------cceEEEeccccccc
Confidence 7777764 57899999997765
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=3.3e-18 Score=171.82 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=98.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|++++++||||||||++|++|+++.+.. .+++++|++||++|+.|++..+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 47899999999999999999999977665 46799999999999999887664 4556555543221
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEe
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~S 336 (397)
....+..+.+.|.+.+...+.. ...+.++++|||||+|++ +.++......+..... ..++|+|+||
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-------~~~~~~l~~S 131 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-------MGDAGAIFMT 131 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-------TTSCEEEEEE
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-------CCCCcEEEEe
Confidence 1122345677889988776665 556899999999999987 3334444444443321 1578999999
Q ss_pred ccCCCC
Q 015946 337 AAIAEL 342 (397)
Q Consensus 337 ATl~~~ 342 (397)
||+++.
T Consensus 132 AT~~~~ 137 (431)
T 2v6i_A 132 ATPPGT 137 (431)
T ss_dssp SSCTTC
T ss_pred CCCCcc
Confidence 999976
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=2.8e-18 Score=173.60 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=96.7
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecC
Q 015946 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252 (397)
Q Consensus 173 ~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 252 (397)
..+..|++++++||||||||++|++|++..+.. .++++||++||++|+.|++..+. ++.+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhc------CceEeEEec
Confidence 346678999999999999999999999998875 46799999999999999988775 333333222
Q ss_pred CCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceE
Q 015946 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (397)
Q Consensus 253 ~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~ 332 (397)
..... -..+..+.++|.+.+...+... ..+.++++|||||||++ +..+...+..+..... .+++|+
T Consensus 81 ~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~-------~~~~~~ 146 (459)
T 2z83_A 81 AVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFT-DPASIAARGYIATKVE-------LGEAAA 146 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHH-------TTSCEE
T ss_pred ccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccC-CchhhHHHHHHHHHhc-------cCCccE
Confidence 11110 1233457788888887766554 55889999999999984 1111111111222211 147899
Q ss_pred EEEeccCCCC
Q 015946 333 ILVTAAIAEL 342 (397)
Q Consensus 333 i~~SATl~~~ 342 (397)
|+||||++..
T Consensus 147 il~SAT~~~~ 156 (459)
T 2z83_A 147 IFMTATPPGT 156 (459)
T ss_dssp EEECSSCTTC
T ss_pred EEEEcCCCcc
Confidence 9999999976
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.72 E-value=2.3e-17 Score=180.44 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=123.3
Q ss_pred HHHHHHHHHCC-------CCCCcHHHHHHHHHHhC--------------CCcEEEEcCCCCchHHHHHHHHHHHHHhccc
Q 015946 150 AEMIKAVEKMG-------LFVPSEIQCVGIPAVLN--------------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEA 208 (397)
Q Consensus 150 ~~l~~~l~~~g-------~~~~~~iQ~~ai~~i~~--------------g~dvlv~apTGsGKTl~~~lpil~~l~~~~~ 208 (397)
+.+++.+..+- ...|+++|..|++.++. +++++++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 45666666642 23599999999998875 368999999999999997 6666544321
Q ss_pred cCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh-cCCccEEEeChHHHHHHHhcCC--
Q 015946 209 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDRN-- 285 (397)
Q Consensus 209 ~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~IlV~TP~~L~~~l~~~~-- 285 (397)
+...++|||||+++|+.|+...+..+... .+.++.+.......+ ..+++|+|+||++|..++....
T Consensus 328 -----~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~ 396 (1038)
T 2w00_A 328 -----DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDL 396 (1038)
T ss_dssp -----TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCC
T ss_pred -----CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccch
Confidence 13469999999999999999988877542 233455555555555 3568999999999999886532
Q ss_pred CCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 286 ~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
..+....+||+||||++. ++.....|+..++ +.++++||||....
T Consensus 397 ~~~~~~~lvIiDEAHrs~---~~~~~~~I~~~~p---------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQ---FGEAQKNLKKKFK---------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp GGGGSCEEEEEESCCTTH---HHHHHHHHHHHCS---------SEEEEEEESSCCCS
T ss_pred hccccccEEEEEccchhc---chHHHHHHHHhCC---------cccEEEEeCCcccc
Confidence 235678899999999975 3344556666553 68999999998754
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.69 E-value=9.9e-17 Score=165.87 Aligned_cols=131 Identities=20% Similarity=0.093 Sum_probs=103.3
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~----i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~ 235 (397)
|| .++|.|.+++.. +..|+++++.||||+|||++|++|++. .++++||++||++|+.|+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHH
Confidence 45 689999997764 457999999999999999999999997 156999999999999999999
Q ss_pred HHHhhhcCCcceeeecCCCCh---------------------------------HHHH------------------HHhc
Q 015946 236 AKFISHCARLDSSMENGGVSS---------------------------------KALE------------------DVSN 264 (397)
Q Consensus 236 ~~~~~~~~~~~v~~~~g~~~~---------------------------------~~~~------------------~~~~ 264 (397)
+..+....++++..+.|..+. .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 988877777888777663221 1111 1223
Q ss_pred CCccEEEeChHHHHHHHhcCCCCC-CCcceEEEcCCCcccc
Q 015946 265 APIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFD 304 (397)
Q Consensus 265 ~~~~IlV~TP~~L~~~l~~~~~~l-~~l~~lVlDEah~~l~ 304 (397)
..++|||+|++.|++...+..+.+ ....+|||||||+|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 457999999999998865544433 4678999999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.67 E-value=2.5e-17 Score=173.27 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=101.9
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecC
Q 015946 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252 (397)
Q Consensus 173 ~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g 252 (397)
...+.|++++++||||||||+ +++..+.. ...++|++|||+||.|+++.+... ++.+..++|
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFS----------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHH----------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHh----------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 345689999999999999998 44454443 234699999999999999998775 678888888
Q ss_pred CCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceE
Q 015946 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (397)
Q Consensus 253 ~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~ 332 (397)
+..... .......+++++|++.+. ....+++|||||||+|++.+|+..+..++..++. ...|+
T Consensus 212 ~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-------~~i~i 274 (677)
T 3rc3_A 212 EERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-------EEVHL 274 (677)
T ss_dssp SCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-------EEEEE
T ss_pred CeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc-------cceEE
Confidence 754310 000112456666654331 2467899999999999999999999999988762 46899
Q ss_pred EEEeccCCCChhHHH
Q 015946 333 ILVTAAIAELSSLME 347 (397)
Q Consensus 333 i~~SATl~~~~~l~~ 347 (397)
+++|||.+....+..
T Consensus 275 l~~SAT~~~i~~l~~ 289 (677)
T 3rc3_A 275 CGEPAAIDLVMELMY 289 (677)
T ss_dssp EECGGGHHHHHHHHH
T ss_pred EeccchHHHHHHHHH
Confidence 999999543333333
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.57 E-value=1e-14 Score=148.52 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i----~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|+|+|.+++..+ ..|+++|++.+||+|||++++.. +..+... ....++||||| .+|+.|..+.+..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~-------~~~~~~LIv~P-~~l~~qw~~e~~~ 107 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKE-------NELTPSLVICP-LSVLKNWEEELSK 107 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHT-------TCCSSEEEEEC-STTHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhc-------CCCCCEEEEcc-HHHHHHHHHHHHH
Confidence 6999999999876 36789999999999999996544 4444332 13568999999 5688999888888
Q ss_pred hhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHh
Q 015946 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l 318 (397)
+.. ++++..++|+... .....++|+|+|++.+..... +....+++||+||||++-+.+ ......+..+
T Consensus 108 ~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l 175 (500)
T 1z63_A 108 FAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL 175 (500)
T ss_dssp HCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS
T ss_pred HCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh
Confidence 754 4667777766532 112347899999999865543 233468899999999996544 2334444444
Q ss_pred hhhhhccCCCCceEEEEeccCCCC
Q 015946 319 KDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
. ..+.+++|||.-..
T Consensus 176 ~---------~~~~l~LTaTP~~n 190 (500)
T 1z63_A 176 K---------SKYRIALTGTPIEN 190 (500)
T ss_dssp C---------EEEEEEECSSCSTT
T ss_pred c---------cCcEEEEecCCCCC
Confidence 3 45789999997544
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.57 E-value=1.9e-15 Score=155.93 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=87.9
Q ss_pred CCCCCCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 159 MGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 159 ~g~~~~~~iQ~~ai~~----i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
.|| .|+++|.+++.. +..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------------CCcEEEEcCCHHHHHHHHH
Confidence 477 899999998654 5689999999999999999999998752 5689999999999999988
Q ss_pred HHHHhhhcCCcceeeecCCCCh--------HH---------------------------------------HHHHhcCCc
Q 015946 235 MAKFISHCARLDSSMENGGVSS--------KA---------------------------------------LEDVSNAPI 267 (397)
Q Consensus 235 ~~~~~~~~~~~~v~~~~g~~~~--------~~---------------------------------------~~~~~~~~~ 267 (397)
.+..+ ++++..+.|.... .. ..+.....+
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 77664 4444444432210 00 000112346
Q ss_pred cEEEeChHHHHHHHhcCCC-------CCCCcceEEEcCCCcccc
Q 015946 268 GMLIATPSEVLQHIEDRNV-------SCDDIRYVVLDEADTLFD 304 (397)
Q Consensus 268 ~IlV~TP~~L~~~l~~~~~-------~l~~l~~lVlDEah~~l~ 304 (397)
+|||+|+..|++....+.+ .+....++||||||+|.+
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 9999999999886543221 246678999999999943
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.47 E-value=9.2e-14 Score=152.29 Aligned_cols=161 Identities=16% Similarity=0.065 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 162 FVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~--g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+... ...++|||||+ .|+.|....+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--------~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG--------AAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS--------SCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC--------CCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 3789999999998775 45899999999999999877776665532 34589999999 9999988877554
Q ss_pred hhcCCcceeeecCCCChHHHHH--HhcCCccEEEeChHHHHHHHhc-CCCCCCCcceEEEcCCCccccCCCH-HHHHHHH
Q 015946 240 SHCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFG-PEISKIL 315 (397)
Q Consensus 240 ~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDEah~~l~~~f~-~~l~~il 315 (397)
. ++.+..+.|+........ ......+|+|+|++.+...... ..+...++++|||||||++...+.. .....++
T Consensus 223 f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 223 F---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp S---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred h---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 3 566666655332221111 1112469999999987543211 1123457899999999999655421 1223333
Q ss_pred HHhhhhhhccCCCCceEEEEeccCCC
Q 015946 316 NPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
..+.. ...+++++|||.-.
T Consensus 300 ~~L~~-------~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 300 EQLAE-------HVPGVLLLTATPEQ 318 (968)
T ss_dssp HHHHT-------TCSSEEESCSSCSS
T ss_pred HHHhh-------cCCcEEEEEcCCcc
Confidence 33321 24579999999754
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.42 E-value=2.9e-12 Score=134.76 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHH
Q 015946 163 VPSEIQCVGIPAVL---------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~---------~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~ 233 (397)
.|+|+|.+++..+. .+...|+..+||+|||+..+..+...+..... ..+...++|||||+ +|+.|..
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~---~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD---CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT---SSCSCSCEEEEECH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc---ccCCCCcEEEEecH-HHHHHHH
Confidence 68999999998864 45679999999999999987766655543211 11234569999997 8888888
Q ss_pred HHHHHhhhcCCcceeeecCCCChHHHH---HHhc-----CCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccC
Q 015946 234 HMAKFISHCARLDSSMENGGVSSKALE---DVSN-----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~-----~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~ 305 (397)
+.+..+... .+.+..++|+....... .... ...+|+|+|++.+..... .+....+++||+||||++-+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh
Confidence 888887654 45666666664332211 1111 147899999999876542 333456789999999998543
Q ss_pred CCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 306 ~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
. ......+..+. ....+++|||.-..
T Consensus 208 ~--~~~~~al~~l~---------~~~rl~LTgTPiqN 233 (644)
T 1z3i_X 208 D--NQTYLALNSMN---------AQRRVLISGTPIQN 233 (644)
T ss_dssp C--HHHHHHHHHHC---------CSEEEEECSSCSGG
T ss_pred h--hHHHHHHHhcc---------cCcEEEEecCcccC
Confidence 3 33344444443 45789999996443
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.9e-12 Score=139.34 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|+|+|.+++..+. .|++.|++.+||.|||+..+..+...+.... ....+||||| ..|+.|..+.+..
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-------~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-------QNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-------CCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-------CCCCEEEEEC-chHHHHHHHHHHH
Confidence 68999999998665 7889999999999999987666655543321 3456899999 7788888888877
Q ss_pred hhhcCCcceeeecCCCChHHHHHH------------hcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC
Q 015946 239 ISHCARLDSSMENGGVSSKALEDV------------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (397)
Q Consensus 239 ~~~~~~~~v~~~~g~~~~~~~~~~------------~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 306 (397)
+.. ++.+.+++|+......... ....++|+|+|++.+...... +.....++|||||||++-+
T Consensus 308 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn-- 381 (800)
T 3mwy_W 308 WAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKN-- 381 (800)
T ss_dssp HST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCC--
T ss_pred HCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcC--
Confidence 753 5777778777655443332 123478999999999765432 1123578999999999843
Q ss_pred CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 307 f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
....+...+..+. ....+++|||.-..
T Consensus 382 ~~s~~~~~l~~l~---------~~~rl~LTgTPiqN 408 (800)
T 3mwy_W 382 AESSLYESLNSFK---------VANRMLITGTPLQN 408 (800)
T ss_dssp SSSHHHHHHTTSE---------EEEEEEECSCCCSS
T ss_pred chhHHHHHHHHhh---------hccEEEeeCCcCCC
Confidence 3334444555553 34679999997433
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.36 E-value=1.5e-12 Score=136.24 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~----i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.|++.|.+.+.. +..|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 588999988764 5589999999999999999999999998865 356999999999999999999988
Q ss_pred hhhcCCcceeeec
Q 015946 239 ISHCARLDSSMEN 251 (397)
Q Consensus 239 ~~~~~~~~v~~~~ 251 (397)
+....++++..+.
T Consensus 74 l~~~~~~~~~~l~ 86 (620)
T 4a15_A 74 LSSTMKIRAIPMQ 86 (620)
T ss_dssp HHHHSCCCEEECC
T ss_pred HhhccCeEEEEEE
Confidence 8765555554433
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.22 E-value=6.3e-11 Score=123.19 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=104.3
Q ss_pred HCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 158 ~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
-+|. .|+++|....-.+..|+ |+...||+|||+++.+|++-..+. |..+.||+||+.||.|-+..+.
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHHHHHH
Confidence 3587 79999999999999888 999999999999999999866553 6679999999999999999999
Q ss_pred HhhhcCCcceeeecCC--------------------------------------------------CChHHHHHHhcCCc
Q 015946 238 FISHCARLDSSMENGG--------------------------------------------------VSSKALEDVSNAPI 267 (397)
Q Consensus 238 ~~~~~~~~~v~~~~g~--------------------------------------------------~~~~~~~~~~~~~~ 267 (397)
.+...+|++|++++.. .+.......+ .|
T Consensus 138 ~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~ 215 (822)
T 3jux_A 138 PVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LC 215 (822)
T ss_dssp HHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HS
T ss_pred HHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cC
Confidence 9999999999998872 1222222223 27
Q ss_pred cEEEeChHHH-HHHHhcC------CCCCCCcceEEEcCCCccc
Q 015946 268 GMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 268 ~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlDEah~~l 303 (397)
||..||..-+ .+.|+.+ ......+.+.||||+|.+|
T Consensus 216 DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 216 DVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp SEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 9999999876 4455432 2234678999999999765
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.09 E-value=2.3e-10 Score=119.43 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchH--HHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRT--LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKT--l~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
+++|..+++.++.++++++.|++||||| ++++++++..+.. ..+.++++++||..++.++.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--------~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--------SCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--------cCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999 6677777765421 14668999999999999988877666555
Q ss_pred CCcceeeecCCCChHHHHHHhcCCcc-EEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~-IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~ 321 (397)
.++......+ .... ....+ ++-.+|+.. . +.........+++||||||+ |++ .+.+..|+..++
T Consensus 223 l~l~~~~~~~-~~~~------~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~-- 287 (608)
T 1w36_D 223 LPLTDEQKKR-IPED------ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALP-- 287 (608)
T ss_dssp SSCCSCCCCS-CSCC------CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCC--
T ss_pred CCCCHHHHhc-cchh------hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCC--
Confidence 4433211100 0000 00011 222233321 1 11112223378999999999 654 567778888775
Q ss_pred hhccCCCCceEEEEe
Q 015946 322 ALKSNGQGFQTILVT 336 (397)
Q Consensus 322 ~~~~~~~~~q~i~~S 336 (397)
.+.|+|++.
T Consensus 288 ------~~~~liLvG 296 (608)
T 1w36_D 288 ------DHARVIFLG 296 (608)
T ss_dssp ------TTCEEEEEE
T ss_pred ------CCCEEEEEc
Confidence 578999986
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.22 E-value=7.5e-06 Score=82.30 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHCCCCCCcHHHHHHHHHHhC----CC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHH
Q 015946 157 EKMGLFVPSEIQCVGIPAVLN----GK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (397)
Q Consensus 157 ~~~g~~~~~~iQ~~ai~~i~~----g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Q 231 (397)
.-+.|..+++-|..++..++. +. .+++.|+.|||||.+. ..++..+... ....+++++||...+..
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~--------~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST--------GETGIILAAPTHAAKKI 89 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT--------TCCCEEEEESSHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc--------CCceEEEecCcHHHHHH
Confidence 345688899999999987653 23 8999999999999654 4455555442 12478999999988876
Q ss_pred HHHH
Q 015946 232 GFHM 235 (397)
Q Consensus 232 v~~~ 235 (397)
+...
T Consensus 90 l~~~ 93 (459)
T 3upu_A 90 LSKL 93 (459)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.22 E-value=8.1e-06 Score=84.35 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
.+++.|..++..++.++.+++.|+.|||||... ..++..+.. .+.++++++||...+..+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES---------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh---------cCCeEEEecCcHHHHHHhHh
Confidence 689999999999999999999999999999763 334444433 36689999999998877654
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.13 E-value=1.5e-05 Score=83.25 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+..+++.|..|+..++.+.-++|.||+|||||.+..- ++..+... .+.++++++||..-+.++...+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999998888899999999999987543 33444321 3568999999999999988776543
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4.3e-05 Score=81.94 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
+..+++.|..|+..++.+.-++|.||.|||||.+..-- +..+... .+.++++++||..-+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999988778999999999999875433 3333321 2568999999999999988877654
No 87
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.09 E-value=8.8e-06 Score=85.35 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~d-vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
.+.+-|.+|+..++..++ .||+||.|||||.+.+--+.+.+ . .+.++|+++||..-|.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-K---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-H---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-h---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578899999999887665 79999999999987554444433 3 3668999999999998887776543
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.02 E-value=6.2e-05 Score=80.61 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
...+++.|..|+..++.+.-++|.||.|||||.+.. .++..+... .+.++++++||..-+.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT--------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc--------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 446899999999999888889999999999998754 344444431 356899999999999888777654
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.66 E-value=0.00069 Score=66.27 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.++|+|...+..+...+-+++..+-+.|||.+.+..++..+... .+..+++++||+..|..++..+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--------~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS--------SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 78999999998776556799999999999998877776655432 3568999999999998888777766543
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=0.00095 Score=57.60 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|+.+++.||+|+|||....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999997643
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.41 E-value=0.00074 Score=69.95 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.++|+|...+..+...+-+++..+-|+|||.+.+..++..+... .+..+++++|++..|..++..++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS--------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 58999999998875567899999999999998877666665542 2558999999999999988877776554
Q ss_pred C
Q 015946 243 A 243 (397)
Q Consensus 243 ~ 243 (397)
.
T Consensus 235 ~ 235 (592)
T 3cpe_A 235 L 235 (592)
T ss_dssp S
T ss_pred C
Confidence 4
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.05 E-value=0.002 Score=54.23 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999754
No 93
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.04 E-value=0.0013 Score=69.03 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCCCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHH
Q 015946 160 GLFVPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (397)
Q Consensus 160 g~~~~~~iQ~~ai~~i~----~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~ 234 (397)
|| .|++.|..+|..+. .|. ..++.|.||||||++++-.+ ..+ +..+|||+|+..+|.|.+.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~------------~~~~lvv~~~~~~A~ql~~ 71 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL------------GRPALVLAPNKILAAQLAA 71 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH------------TCCEEEEESSHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh------------CCCEEEEecCHHHHHHHHH
Confidence 67 89999999988654 343 57788999999998765322 222 2248999999999999999
Q ss_pred HHHHhhh
Q 015946 235 MAKFISH 241 (397)
Q Consensus 235 ~~~~~~~ 241 (397)
.++.+..
T Consensus 72 el~~~~~ 78 (664)
T 1c4o_A 72 EFRELFP 78 (664)
T ss_dssp HHHHHCT
T ss_pred HHHHHCC
Confidence 9998853
No 94
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0073 Score=57.43 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCCh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAELS 343 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~~ 343 (397)
....+|||||+|.+. + ...+..+++... ......-+|+.++|+....
T Consensus 131 ~~~~ii~lDE~d~l~--~-q~~L~~l~~~~~-----~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 131 KRKTLILIQNPENLL--S-EKILQYFEKWIS-----SKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp SCEEEEEEECCSSSC--C-THHHHHHHHHHH-----CSSCCEEEEEECCSSCCCH
T ss_pred CCceEEEEecHHHhh--c-chHHHHHHhccc-----ccCCcEEEEEEecCcccch
Confidence 345689999999987 2 334444444221 1224567888899987764
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.81 E-value=0.0027 Score=66.03 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
..+++-|.+++.+ .+..++|.|+.|||||.+.+--+...+.... ....++++|++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 3568999999999999886665555554321 123489999999999999988887653
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.67 E-value=0.0077 Score=52.47 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
.|+=.++.|+.|+|||...+--+ ..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~---------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKL---------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHH---------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHH---------CCCeEEEEeecc
Confidence 35668899999999998754333 33322 345788888874
No 97
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.008 Score=54.18 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.-+++.|++|+|||.+.+-- +..+.. ++.+++++.|...-- - ...+....|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~-~~r~~~---------~g~kVli~~~~~d~r-~----~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR-LHRLEY---------ADVKYLVFKPKIDTR-S----IRNIQSRTGTSL--------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH-HHHHHH---------TTCCEEEEEECCCGG-G----CSSCCCCCCCSS---------
T ss_pred CcEEEEEECCCCCcHHHHHHHH-HHHHHh---------cCCEEEEEEeccCch-H----HHHHHHhcCCCc---------
Confidence 4566888999999999875443 333333 356788887655310 0 001111111111
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCcc
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~ 302 (397)
..+.+.+...+++.+..... -...++|||||++.+
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred ----------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12345677777777765322 245789999999964
No 98
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.56 E-value=0.0081 Score=59.57 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=52.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~ 259 (397)
=.++.|+.|+|||..+.--+ . ....+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~----------~~~~lVlTpT~~aa~~l~~kl~~~----~~~------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----N----------FEEDLILVPGRQAAEMIRRRANAS----GII------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----C----------TTTCEEEESCHHHHHHHHHHHTTT----SCC-------------
T ss_pred EEEEEcCCCCCHHHHHHHHh-----c----------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc-------------
Confidence 47899999999998653211 1 135699999999998877655321 100
Q ss_pred HHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC
Q 015946 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (397)
Q Consensus 260 ~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~ 306 (397)
.....-|.|-++++- +......-..++||||||- |++.+
T Consensus 211 -----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~ 249 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG 249 (446)
T ss_dssp -----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH
T ss_pred -----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH
Confidence 001223567665432 2222223358899999998 54444
No 99
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.36 E-value=0.0051 Score=64.48 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....++++|+.|+..+.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999875 3678999999999999987665655554421 124589999999999999888877653
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.34 E-value=0.014 Score=51.14 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
.|+=.++.|++|+|||.+.+- ++..+.. ++.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH---------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH---------CCCEEEEEEecc
Confidence 355678899999999977553 3444433 467899998874
No 101
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.22 E-value=0.059 Score=53.65 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceee-ecCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM-ENGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~-~~g~~~ 255 (397)
.|.-+++.|++|+|||...+--+...... .+..++|+.-.-. ..|+...+... ..++.... ..|...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~---------~g~~Vl~~s~E~s-~~~l~~r~~~~--~~~~~~~~l~~g~l~ 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK---------TNENVAIFSLEMS-AQQLVMRMLCA--EGNINAQNLRTGKLT 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH---------SSCCEEEEESSSC-HHHHHHHHHHH--HHTCCHHHHHTSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEEECCCC-HHHHHHHHHHH--HcCCCHHHHhcCCCC
Confidence 56679999999999997544433333322 2345777664322 23333332111 11211111 122222
Q ss_pred hHHHHH------HhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-----CHHHHHHHHHHhh
Q 015946 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----FGPEISKILNPLK 319 (397)
Q Consensus 256 ~~~~~~------~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-----f~~~l~~il~~l~ 319 (397)
...... .+.. ..+.+. |.+.+...+..-. .-.++++||||+.+.|...+ ....+..+++.|.
T Consensus 270 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSN-AGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHHHS-SCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 222111 1222 235553 4445544443211 11358999999999887432 4556677777776
Q ss_pred hhhhccCCCCceEEEEec
Q 015946 320 DSALKSNGQGFQTILVTA 337 (397)
Q Consensus 320 ~~~~~~~~~~~q~i~~SA 337 (397)
..... .++.+|++|-
T Consensus 348 ~lAke---~~i~vi~~sq 362 (454)
T 2r6a_A 348 ALARE---LEVPVIALSQ 362 (454)
T ss_dssp HHHHH---HTCCEEEEEC
T ss_pred HHHHH---hCCeEEEEec
Confidence 44322 2567888775
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.16 E-value=0.011 Score=62.49 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHh
Q 015946 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (397)
Q Consensus 162 ~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~ 239 (397)
..+++-|.+++.+ .+..++|.|+.|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 3568999999999999987666665554321 12358999999999999988877665
No 103
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.10 E-value=0.014 Score=51.86 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 104
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.017 Score=53.26 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=32.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQ-CVGIPA--VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ-~~ai~~--i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-.+..++.+...-. .+.+ ...+.. +..++.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568888877777777765311 0111 111111 134578999999999999754
No 105
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.05 E-value=0.027 Score=50.32 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.|.=.++.|+.|+|||...+-- +..... .+.+++|+.|...--.. ...+....|+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~---------~g~kvli~kp~~D~R~~----~~~I~Sr~G~~~--------- 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY---------AKQKVVVFKPAIDDRYH----KEKVVSHNGNAI--------- 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH---------TTCCEEEEEEC---------------CBTTBCC---------
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH---------cCCceEEEEeccCCcch----hhhHHHhcCCce---------
Confidence 4566789999999999765443 344433 35678888886541110 011112222211
Q ss_pred HHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHH
Q 015946 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il 315 (397)
.-+.|..+..+++.+ ..++++|+||||+.+ +.+..+++..+.
T Consensus 84 ----------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf-~~~~v~~l~~la 125 (219)
T 3e2i_A 84 ----------EAINISKASEIMTHD------LTNVDVIGIDEVQFF-DDEIVSIVEKLS 125 (219)
T ss_dssp ----------EEEEESSGGGGGGSC------CTTCSEEEECCGGGS-CTHHHHHHHHHH
T ss_pred ----------eeEEeCCHHHHHHHH------hcCCCEEEEechhcC-CHHHHHHHHHHH
Confidence 124555554443332 246889999999954 333333444333
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.02 E-value=0.054 Score=51.05 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999764
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.00 E-value=0.027 Score=50.32 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
|+=.++.|+.|+|||.+.+--+... .. .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF---------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH---------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH---------CCCEEEEEEeccC
Confidence 4446789999999998755444433 33 4678999988764
No 108
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.99 E-value=0.046 Score=54.28 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+..+++.||+|+|||....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.96 E-value=0.019 Score=53.57 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 447999999999999764
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.095 Score=45.40 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999754
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.91 E-value=0.028 Score=53.75 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+..+++.||+|+|||....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 112
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.84 E-value=0.13 Score=49.84 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=30.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHH-HhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQ-CVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ-~~ai~~-i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-...+++.+...-. .+.. ...+.. ...++.+|+.||+|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVI---LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHH---HhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4568888767777776654310 0000 000000 113578999999999999764
No 113
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.84 E-value=0.06 Score=53.43 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceee-ecCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM-ENGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~-~~g~~~ 255 (397)
.|.-+++.|++|+|||... +-++..+... .+..++|++--- -..|+...+-.. ..++.... ..|...
T Consensus 199 ~G~l~ii~G~pg~GKT~la-l~ia~~~a~~--------~g~~vl~~slE~-~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFA-LTIAQNAALK--------EGVGVGIYSLEM-PAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHHT--------TCCCEEEEESSS-CHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHh--------CCCeEEEEECCC-CHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 4566899999999999644 4444433321 244577765432 223433332211 11222111 122222
Q ss_pred hHHHHH------HhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccC--C-----CHHHHHHHHHH
Q 015946 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--G-----FGPEISKILNP 317 (397)
Q Consensus 256 ~~~~~~------~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~--~-----f~~~l~~il~~ 317 (397)
...... .+.. ..+.|. |+..+...+.+-.. -..+++||||.++.|... + ....+..+++.
T Consensus 267 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 222111 1222 235553 34444443332100 125889999999988643 2 23456667776
Q ss_pred hhhhhhccCCCCceEEEEec
Q 015946 318 LKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SA 337 (397)
|...... .++.+|++|-
T Consensus 345 Lk~lAke---~~v~vi~lsq 361 (444)
T 2q6t_A 345 LKALARE---LGIPIIALSQ 361 (444)
T ss_dssp HHHHHHH---HTSCEEEEEE
T ss_pred HHHHHHH---hCCeEEEEec
Confidence 6654422 2678888875
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.69 E-value=0.025 Score=58.82 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 163 VPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~--g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.+|.-|.+++..+.. ..-.++.|+-|.|||.+.-+.+-. +. ..++|.+|+.+-+..+++....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~------------~~~~vtAP~~~a~~~l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA------------GRAIVTAPAKASTDVLAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS------------SCEEEECSSCCSCHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH------------hCcEEECCCHHHHHHHHHHhhC--
Confidence 678999999988875 335799999999999665554432 21 1369999999877654433211
Q ss_pred hcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 241 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
.|-+..|..+.. .+...++||||||=.+ -.+.+..++..
T Consensus 240 ---------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~--- 278 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR--- 278 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT---
T ss_pred ---------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh---
Confidence 133346665432 1345889999999865 24555555542
Q ss_pred hhhccCCCCceEEEEeccCCCC
Q 015946 321 SALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (397)
...++||.|+...
T Consensus 279 ---------~~~v~~~tTv~GY 291 (671)
T 2zpa_A 279 ---------FPRTLLTTTVQGY 291 (671)
T ss_dssp ---------SSEEEEEEEBSST
T ss_pred ---------CCeEEEEecCCcC
Confidence 2356777777665
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.61 E-value=0.074 Score=46.70 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
.|+=.++.|+.|+|||.-.+- .+..... .+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~-~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMR-RVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHH-HHHHHHH---------cCCeEEEEccc
Confidence 356689999999999965433 3333332 35688888876
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.58 E-value=0.091 Score=48.11 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
..+++.||+|+|||....
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999997643
No 117
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.54 E-value=0.024 Score=59.33 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~----~g~-dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|+..|..+|..+. .|. ..++.|.||||||++.+--+ ... ...+|||+|+..+|.|.+..++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~------------~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV------------NKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH------------CCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh------------CCCEEEEECCHHHHHHHHHHHH
Confidence 68888988887544 343 47788999999998765322 221 2248999999999999999999
Q ss_pred Hhhh
Q 015946 238 FISH 241 (397)
Q Consensus 238 ~~~~ 241 (397)
.+..
T Consensus 79 ~~~~ 82 (661)
T 2d7d_A 79 EFFP 82 (661)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 9853
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.045 Score=49.41 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
.|+=.++.|+.|+|||...+--+... .. ++.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~---------~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QI---------AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HT---------TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH---------CCCeEEEEeecCC
Confidence 45667889999999997754444333 32 4678888887654
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.35 E-value=0.087 Score=48.94 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=30.2
Q ss_pred ChHHHHHHHhcCCCCCCCcceEEEcCCCccccC----CCHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 273 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 273 TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
+++.|...+. ......+.++|||||...+++. .....+..+++.|...... .++-+|++|-.
T Consensus 131 ~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~---~~~~vi~vsh~ 196 (296)
T 1cr0_A 131 ETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS---TGVVLVVICHL 196 (296)
T ss_dssp CHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHH---HCCEEEEEEEC
T ss_pred CHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEEec
Confidence 4455544443 1112356899999999987632 1113445555555443211 14566666655
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.34 E-value=0.026 Score=54.08 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceee-ecCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM-ENGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~-~~g~~~ 255 (397)
.|.-+++.|++|+|||...+- ++..+.. .+..++|++-- .-..|+...+-.... ++.... ..|..+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~---------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls 111 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALN---------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLD 111 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH---------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCC
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH---------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCC
Confidence 556799999999999975443 3333332 24467776543 223444333322111 221111 122233
Q ss_pred hHHHHH------HhcCCccEEE-eCh----HHHHHHHhcCCCCCCCcceEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015946 256 SKALED------VSNAPIGMLI-ATP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (397)
Q Consensus 256 ~~~~~~------~~~~~~~IlV-~TP----~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~----f~~~l~~il~~l~~ 320 (397)
..+..+ .+.. ..|.| .+| ..|...+.+-......+++||||-++.|...+ ...++..|.+.|+.
T Consensus 112 ~~e~~~l~~a~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~ 190 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKT 190 (338)
T ss_dssp HHHHHHHHHHHHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 222211 1122 23444 344 34444333211111268999999999875321 12235666666654
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.... .++.+|++|-.
T Consensus 191 lAke---l~vpVi~lsQl 205 (338)
T 4a1f_A 191 LARE---LEIPIIALVQL 205 (338)
T ss_dssp HHHH---HTSCEEEEEEC
T ss_pred HHHH---cCCeEEEEEec
Confidence 4322 26788888864
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.34 E-value=0.14 Score=50.64 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc-Cc-hhHHHHHHHHHHHhhhcCCcceeeecCCCCh
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSMENGGVSS 256 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~-Pt-reLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~ 256 (397)
.-++++|++|+|||.....-+.. +.. .+.+++++. .+ |.-+ ...+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~---------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~-- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKK---------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ-- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHH---------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS--
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH---------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC--
Confidence 35889999999999875443332 222 244555544 33 3322 2234444444454443322221
Q ss_pred HHHHHHhcCCccEEEeChHHHH-HHHhcCCCCCCCcceEEEcCCCccc---cCCCHHHHHHHHHHhhhhhhccCCCCceE
Q 015946 257 KALEDVSNAPIGMLIATPSEVL-QHIEDRNVSCDDIRYVVLDEADTLF---DRGFGPEISKILNPLKDSALKSNGQGFQT 332 (397)
Q Consensus 257 ~~~~~~~~~~~~IlV~TP~~L~-~~l~~~~~~l~~l~~lVlDEah~~l---~~~f~~~l~~il~~l~~~~~~~~~~~~q~ 332 (397)
.|..+. +.+.. ....+.+++|||.+-++. +..+..++..++..+. +..-+
T Consensus 163 ----------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--------pd~vl 216 (433)
T 3kl4_A 163 ----------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--------PDDVI 216 (433)
T ss_dssp ----------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--------CSEEE
T ss_pred ----------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--------CcceE
Confidence 122221 11221 112467888999887542 2335555666655553 45567
Q ss_pred EEEeccCCCC-hhHHHhhh
Q 015946 333 ILVTAAIAEL-SSLMECLE 350 (397)
Q Consensus 333 i~~SATl~~~-~~l~~~l~ 350 (397)
++++|+.+.. ...+..|.
T Consensus 217 LVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 217 LVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp EEEEGGGGGGGHHHHHHHH
T ss_pred EEEeCccchHHHHHHHHHh
Confidence 7788876644 44444444
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.33 E-value=0.047 Score=52.36 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999865
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.32 E-value=0.05 Score=51.20 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.6
Q ss_pred CCcceEEEcCCCccc
Q 015946 289 DDIRYVVLDEADTLF 303 (397)
Q Consensus 289 ~~l~~lVlDEah~~l 303 (397)
...++|||||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 467899999999874
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.29 E-value=0.25 Score=43.17 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999754
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.27 E-value=0.025 Score=63.49 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
.+|+-|..+|..- +++++|.|+.|||||.+.+--++..+..... ....-++++|++|+..+..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999998763 8899999999999999877666666654210 11234899999999999998887765
No 126
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.16 E-value=0.13 Score=46.41 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=29.1
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 141 SSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g--~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+|+++.-.+.+.+.+.++- +..+..+... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 45777776666666665420 1111111111 1123467999999999999754
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.14 E-value=0.073 Score=50.61 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHH
Q 015946 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 164 ~~~iQ~~ai~~i~----~g~---dvlv~apTGsGKTl~~~ 196 (397)
++|||..++..+. .|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888776543 454 39999999999997654
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.10 E-value=0.43 Score=42.29 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|.-+++.|++|+|||...+--+...+ . .+..++|+.-. .-..++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 567899999999999986443333332 2 24467776633 33445444443
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.03 E-value=0.17 Score=47.72 Aligned_cols=50 Identities=10% Similarity=0.252 Sum_probs=32.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~-----~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-.+.+++.|...=. .+.. .+.+. ..+.+++.||+|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4569998888888887765311 1110 11111 2357999999999999764
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.17 Score=48.03 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+|+++--.+.+.+.+...=+.. -...++++.||+|+|||...
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 45677666677777665431110 12235999999999999864
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.99 E-value=0.045 Score=52.50 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999764
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.96 E-value=0.18 Score=43.73 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+.+++.||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.16 Score=48.00 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=31.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~-----~g~dvlv~apTGsGKTl~~ 195 (397)
..+|++++-.+.+.+.|.+.=. .|.+ .+.+. ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4579999877777777754210 0100 01111 2367999999999999764
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.81 E-value=0.16 Score=42.77 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+.++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 135
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.74 E-value=0.14 Score=48.31 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=27.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHH
Q 015946 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~ 195 (397)
+|+++--.+.+++.+.. ++.... ...++++.||+|+|||...
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 57777666666655532 111111 2357999999999999764
No 136
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.74 E-value=0.33 Score=40.67 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+ .+...|||+|. . -..++++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcC
Confidence 558999999999999988887764 77899999998876655433 34579999993 2 2346788889
Q ss_pred ceEEEcCC
Q 015946 292 RYVVLDEA 299 (397)
Q Consensus 292 ~~lVlDEa 299 (397)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 99887443
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.68 E-value=0.14 Score=48.17 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997644
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.57 E-value=0.13 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+++.||+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567899999999999975433
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.15 Score=49.94 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=34.2
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++|=-+...+.|.+.= +.+|--++... +..-+.+|+.||+|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4568999987777777776541 11111111111 112468999999999999863
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.32 E-value=0.097 Score=49.84 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+..+++.||+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.29 E-value=0.077 Score=53.70 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.0
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
..-.+|||||+|.|.... ...+..++..+.. .+..+|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~-~~~l~~L~~~l~~-------~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD-RGGVGQLAQFCRK-------TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTS-TTHHHHHHHHHHH-------CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhh-HHHHHHHHHHHHh-------cCCCEEEEEcCCC
Confidence 345689999999886432 2223344444432 3567888887754
No 142
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.24 E-value=0.3 Score=45.97 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=71.0
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCC--
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-- 253 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~-- 253 (397)
..|.-+++.|++|+|||... +-++..+.. .+..++|++-- .-..|+...+..... ++....+..+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~-l~ia~~~a~---------~g~~vl~~slE-~s~~~l~~R~~~~~~--~i~~~~l~~~~~ 132 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFA-LKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIVTAG--SINAQKIKAARR 132 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHH-HHHHHHHHT---------TTCEEEEEESS-SCHHHHHHHHHHHHT--TCCHHHHHSCHH
T ss_pred CCCcEEEEEeCCCCCHHHHH-HHHHHHHHH---------cCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhcCCC
Confidence 35667999999999999644 333333332 23467777633 333444433332211 2211111111
Q ss_pred ----CChHH---HHHHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcc--eEEEcCCCccccCC----CHHHHHHHH
Q 015946 254 ----VSSKA---LEDVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIR--YVVLDEADTLFDRG----FGPEISKIL 315 (397)
Q Consensus 254 ----~~~~~---~~~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~--~lVlDEah~~l~~~----f~~~l~~il 315 (397)
..... ....+.. ..|+|. |+..+...+..-.. -..++ +||||-+..|...+ ....+..++
T Consensus 133 ~l~~~~~~~l~~a~~~l~~-~~i~i~d~~~~~~~~i~~~i~~l~~-~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~ 210 (315)
T 3bh0_A 133 DFASEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQIS 210 (315)
T ss_dssp HHCSSCHHHHHHHHHHHHT-SCEEEECCSCCBHHHHHHHHHHHHH-TSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHH
Confidence 01110 1111222 345543 34455444432111 12478 99999999875321 235667777
Q ss_pred HHhhhhhhccCCCCceEEEEec
Q 015946 316 NPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SA 337 (397)
+.|...... .++.+|++|.
T Consensus 211 ~~Lk~lAk~---~~i~vi~lsq 229 (315)
T 3bh0_A 211 RDLKKMARE---LDVVVIALSQ 229 (315)
T ss_dssp HHHHHHHHH---HTCEEEEEEC
T ss_pred HHHHHHHHH---hCCeEEEEee
Confidence 776654322 2567777765
No 143
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.08 E-value=0.51 Score=40.88 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=55.7
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ .+...|||+|. .+ ..++++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~-~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VA-SKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HH-HTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----ch-hcCCCcccC
Confidence 457999999999999988887764 67899999998876655433 34689999993 22 246788899
Q ss_pred ceEEEcC
Q 015946 292 RYVVLDE 298 (397)
Q Consensus 292 ~~lVlDE 298 (397)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9888733
No 144
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.00 E-value=0.42 Score=42.04 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=55.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ .+..+|+|+|. +-..++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 558999999999999988877664 77899999998877665443 35578999993 23356788899
Q ss_pred ceEEE
Q 015946 292 RYVVL 296 (397)
Q Consensus 292 ~~lVl 296 (397)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98874
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.97 E-value=0.35 Score=45.55 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 146
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=93.97 E-value=0.52 Score=39.47 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=56.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+ .+...|||+|. +...++++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 568999999999999988877664 67889999998876655433 35579999993 12346788889
Q ss_pred ceEEEcCC
Q 015946 292 RYVVLDEA 299 (397)
Q Consensus 292 ~~lVlDEa 299 (397)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 98887443
No 147
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.94 E-value=0.34 Score=41.12 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++..+..+...+... ++.+..++|+.+...+...+ .+...|||+|. +-..++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 568999999999999888777653 77899999998876655443 34689999993 22346788899
Q ss_pred ceEEEcC
Q 015946 292 RYVVLDE 298 (397)
Q Consensus 292 ~~lVlDE 298 (397)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 9988533
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.80 E-value=0.75 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.8
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpi 199 (397)
+..|.-+++.|++|+|||.....-+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578889999999999998654433
No 149
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.75 E-value=0.38 Score=41.61 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhc
Q 015946 165 SEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g--~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~ 242 (397)
.+-|..++..++.. +-.++.++-|++|+-..+--++..... .|.++.+|+|+..-..... ..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~---------~Gr~V~vLAp~~~s~~~l~-------~~ 99 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE---------QGREVQIIAADRRSQMNMK-------QD 99 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH---------TTCCEEEECSTTHHHHHHS-------CT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh---------cCeEEEEEcCchHHHHHHH-------hh
Confidence 36788999888644 358889999999998875555544443 5789999999987665432 22
Q ss_pred CCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 243 ~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
.++.-..+ |- ..+......|..=+.+|||||..|. ..++..++.....
T Consensus 100 ~~l~~~t~----------------------t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~-- 147 (189)
T 2l8b_A 100 ERLSGELI----------------------TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAAR-- 147 (189)
T ss_dssp TTCSSCSS----------------------ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHH--
T ss_pred cCcCccee----------------------eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHh--
Confidence 22221111 10 1122222223344489999999883 6677777777654
Q ss_pred hccCCCCceEEEEecc
Q 015946 323 LKSNGQGFQTILVTAA 338 (397)
Q Consensus 323 ~~~~~~~~q~i~~SAT 338 (397)
.+.|+|++--+
T Consensus 148 -----~naqvvll~~~ 158 (189)
T 2l8b_A 148 -----HNVQVLITDSG 158 (189)
T ss_dssp -----TTCCEEEEESS
T ss_pred -----cCCEEEEeCCc
Confidence 57899988755
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.68 E-value=0.42 Score=44.30 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
++++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999764
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.57 E-value=0.97 Score=39.18 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpi 199 (397)
.|.-+++.|++|+|||.....-+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999997654433
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.51 E-value=0.14 Score=50.92 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
.++++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 379999999999997643
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.31 E-value=0.72 Score=43.45 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH-HHHHHHHHHHhhhcCCcceeeecCCCC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES-ADQGFHMAKFISHCARLDSSMENGGVS 255 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL-a~Qv~~~~~~~~~~~~~~v~~~~g~~~ 255 (397)
.|.-+++.|++|+|||...+--+........ ..+.+..++|+.-...+ ..++...+..+ ++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~----~gg~~~~vlyi~~e~~~~~~~l~~~~~~~----g~~--------- 168 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE----KGGLSGKAVYIDTEGTFRWERIENMAKAL----GLD--------- 168 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG----GTCCSCEEEEEESSSCCCHHHHHHHHHHT----TCC---------
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHh----CCC---------
Confidence 4567999999999999754433332111100 01124577887655432 34444444433 221
Q ss_pred hHHHHHHhcCCccEEEe---ChHHHHHHH---hcCCCCCCCcceEEEcCCCccccCCC---------HHHHHHHHHHhhh
Q 015946 256 SKALEDVSNAPIGMLIA---TPSEVLQHI---EDRNVSCDDIRYVVLDEADTLFDRGF---------GPEISKILNPLKD 320 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~---TP~~L~~~l---~~~~~~l~~l~~lVlDEah~~l~~~f---------~~~l~~il~~l~~ 320 (397)
... .+. +|.+. +.+.+.+++ .........+++||||.+..+....+ ...+..++..|..
T Consensus 169 ~~~---~~~---~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~ 242 (324)
T 2z43_A 169 IDN---VMN---NIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTR 242 (324)
T ss_dssp HHH---HHH---TEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHH---Hhc---cEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHH
Confidence 111 111 23333 223221211 11000125689999999998763211 1235666666654
Q ss_pred hhhccCCCCceEEEEecc
Q 015946 321 SALKSNGQGFQTILVTAA 338 (397)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (397)
.... .++-+|+.+-.
T Consensus 243 la~~---~~~~Vi~~nq~ 257 (324)
T 2z43_A 243 LAEV---YDIAVIITNQV 257 (324)
T ss_dssp HHHH---HTCEEEEEEEC
T ss_pred HHHH---hCCEEEEEcce
Confidence 4322 24556665443
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.11 E-value=0.3 Score=45.46 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999754
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.00 E-value=1.6 Score=43.07 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=33.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc--CchhHHHHHHHHHHHhhhcCCcceeee
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC--TTEESADQGFHMAKFISHCARLDSSME 250 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~--PtreLa~Qv~~~~~~~~~~~~~~v~~~ 250 (397)
.-++++|++|+|||....--+. .+.. .+.++++++ |.|.-+ +..+..+....++.+...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~~---------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQK---------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT---------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECC
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHHH---------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEec
Confidence 3589999999999987544332 2332 344555555 334433 234455555556655443
No 156
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.88 E-value=0.23 Score=49.24 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=32.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHH-H-HHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVG-I-PAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~a-i-~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|++++-...+.+.|...-. .|....- + ......+.+|+.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 35679998877777777764311 0100000 0 00123468999999999999764
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.79 E-value=0.62 Score=41.20 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=18.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpi 199 (397)
.|.-+++.||+|+|||.....-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 46779999999999998655433
No 158
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=92.76 E-value=2.5 Score=35.50 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=55.6
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ .....|||+|.- ...++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 458999999999999988887764 77889999998876655433 346899999942 2346778888
Q ss_pred ceEEEcC
Q 015946 292 RYVVLDE 298 (397)
Q Consensus 292 ~~lVlDE 298 (397)
++||.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8888643
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.74 E-value=0.54 Score=43.45 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
++++.||.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999754
No 160
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.71 E-value=0.55 Score=46.48 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee-cCC--
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGG-- 253 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~-~g~-- 253 (397)
.|.-+++.|++|+|||...+--+. .+.. .+..++|++-- .-..|+...+.... .++....+ .|.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~-~~a~---------~g~~vl~fSlE-ms~~ql~~R~~~~~--~~i~~~~l~~g~~~ 262 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAK-NMSD---------NDDVVNLHSLE-MGKKENIKRLIVTA--GSINAQKIKAARRD 262 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHH-HHHH---------TTCEEEEECSS-SCTTHHHHHHHHHH--SCCCHHHHHHTGGG
T ss_pred CCcEEEEEeCCCCChHHHHHHHHH-HHHH---------cCCEEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcccCC
Confidence 456799999999999975443333 3332 24467776533 22233333322211 12211111 111
Q ss_pred ---CChH---HHHHHhcCCccEEE-e----ChHHHHHHHhcCCCCCCCcc--eEEEcCCCccccCC----CHHHHHHHHH
Q 015946 254 ---VSSK---ALEDVSNAPIGMLI-A----TPSEVLQHIEDRNVSCDDIR--YVVLDEADTLFDRG----FGPEISKILN 316 (397)
Q Consensus 254 ---~~~~---~~~~~~~~~~~IlV-~----TP~~L~~~l~~~~~~l~~l~--~lVlDEah~~l~~~----f~~~l~~il~ 316 (397)
.... .....+.. ..|.| . |+..+...+.+-.. -..++ +||||-+..|...+ ....+..+.+
T Consensus 263 l~~~~~~~l~~a~~~l~~-~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp TCCSCHHHHHHHHHHHHT-SCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 1111 11112222 34554 2 44445444432110 12578 99999999876332 3446677777
Q ss_pred HhhhhhhccCCCCceEEEEecc
Q 015946 317 PLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SAT 338 (397)
.|...... .++.+|++|..
T Consensus 341 ~Lk~lAke---~~v~vi~lsql 359 (444)
T 3bgw_A 341 DLKKMARE---LDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHH---HTCEEEEEEEC
T ss_pred HHHHHHHH---hCCeEEEEecC
Confidence 77654422 26778888763
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.63 E-value=0.55 Score=44.90 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=30.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-----hCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV-----LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i-----~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|++++-.+.+++.|...=. .+. ..+.+ ...+.+|+.||+|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4578888766666666654210 000 00111 12357999999999999864
No 162
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.49 E-value=1.6 Score=44.04 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+.-+..++..+..... .++.+..++|+.....+...+ .+..+|||+|. +-..++++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCccc
Confidence 466899999999999999888876533 267889999998876655443 35689999995 2345788999
Q ss_pred cceEEEcCC
Q 015946 291 IRYVVLDEA 299 (397)
Q Consensus 291 l~~lVlDEa 299 (397)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 999886544
No 163
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.35 E-value=0.72 Score=44.45 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
.|.-+++.|++|+|||... +.++..+.. .+..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~---------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQK---------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHH---------CCCeEEEEECCC
Confidence 4667999999999999644 444444433 244677776543
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.26 E-value=0.18 Score=45.01 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=28.5
Q ss_pred CCcceEEEcCCCcccc-----CCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCC
Q 015946 289 DDIRYVVLDEADTLFD-----RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~-----~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (397)
.+.++||+||.-.+++ ......+..++..+.. .+.-+|+.|-.+.
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-------~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-------MGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-------HCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-------CCCeEEEEECCCC
Confidence 4578999999988876 3445557777777653 2444555554433
No 165
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.86 E-value=0.14 Score=45.69 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~ 237 (397)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|++-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------cCCCceeeccc-CCHHHHHHHHH
Confidence 45679999999999996543333333333 13356666532 23444444443
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.74 E-value=0.83 Score=45.73 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~ 241 (397)
.|....+.+-||||||++..--+ . . .+..+|||+|+...|.|.+..++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~---~---------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-E---R---------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-H---H---------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-H---H---------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678999999999998643322 1 1 233589999999999999999998753
No 167
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.60 E-value=0.48 Score=44.46 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
|.-+++.|++|+|||...+-
T Consensus 98 g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45799999999999975443
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.60 E-value=1.5 Score=42.78 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCC
Q 015946 137 AEVVSSFQELGLKAEMIKAVEKMGLF 162 (397)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~ 162 (397)
..++......|+++..++.|.+.||.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 34566677778888888888888876
No 169
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.49 E-value=0.99 Score=45.20 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=69.3
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCccee----eec
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS----MEN 251 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~----~~~ 251 (397)
..|.-+++.|++|+|||...+- ++..+... .+..++|++-- .-..|+...+.... .++... ...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~-~a~~~a~~--------~g~~vl~~s~E-~s~~~l~~r~~~~~--~~~~~~~~~~~~~ 307 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQ-QALQWGTA--------MGKKVGLAMLE-ESVEETAEDLIGLH--NRVRLRQSDSLKR 307 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHH-HHHHHTTT--------SCCCEEEEESS-SCHHHHHHHHHHHH--TTSCCTTCHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHH-HHHHHHHh--------cCCcEEEEecc-CCHHHHHHHHHHHH--cCCChhhcccccc
Confidence 3566799999999999975433 33333221 14467776532 22344444332211 122110 000
Q ss_pred CCCC---hHHHHHH-hcCCccEEEe-C-----hHHHHHHHhcCCCCCCCcceEEEcCCCccccC----CCHHHHHHHHHH
Q 015946 252 GGVS---SKALEDV-SNAPIGMLIA-T-----PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNP 317 (397)
Q Consensus 252 g~~~---~~~~~~~-~~~~~~IlV~-T-----P~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~----~f~~~l~~il~~ 317 (397)
|... ....... +.. ..|.|. + +..+...+..-.. -..+++||||=+..|... +....+..++..
T Consensus 308 g~l~~~~~~~~~~~~~~~-~~l~i~~~~~~~~~~~i~~~i~~~~~-~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~ 385 (503)
T 1q57_A 308 EIIENGKFDQWFDELFGN-DTFHLYDSFAEAETDRLLAKLAYMRS-GLGCDVIILDHISIVVSASGESDERKMIDNLMTK 385 (503)
T ss_dssp HHHHTSHHHHHHHHHHTT-TCEEEECCC---CHHHHHHHHHHHHH-TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcc-CCEEEECCCCCCCHHHHHHHHHHHHH-hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHH
Confidence 1000 0000111 112 234443 3 3444444432111 125889999999876532 233556667766
Q ss_pred hhhhhhccCCCCceEEEEecc
Q 015946 318 LKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SAT 338 (397)
|...... .++.+|++|-.
T Consensus 386 Lk~lak~---~~i~vi~~~q~ 403 (503)
T 1q57_A 386 LKGFAKS---TGVVLVVICHL 403 (503)
T ss_dssp HHHHHHH---HTCEEEEEEEC
T ss_pred HHHHHHH---HCCeEEEEEcC
Confidence 6544322 25677777643
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.33 E-value=0.48 Score=45.32 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCc
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Pt 225 (397)
.|.-+++.|++|+|||...+--+.. +.. .+..++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~-~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN-AQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHh---------CCCeEEEEECC
Confidence 5677999999999999764443333 332 24567777644
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.32 E-value=1.9 Score=40.23 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=19.0
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
...+++||||||.|. ......+++.+.
T Consensus 81 ~~~kvviIdead~lt----~~a~naLLk~LE 107 (305)
T 2gno_A 81 YTRKYVIVHDCERMT----QQAANAFLKALE 107 (305)
T ss_dssp SSSEEEEETTGGGBC----HHHHHHTHHHHH
T ss_pred CCceEEEeccHHHhC----HHHHHHHHHHHh
Confidence 567899999999884 344455666554
No 172
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.31 E-value=2.6 Score=42.86 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+.-+..++..+..... .++.+..++|+.....+...+ ....+|||+|. +-..++++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCccc
Confidence 466899999999999999988876533 267888999998876655443 35689999995 2335788899
Q ss_pred cceEEEcCCC
Q 015946 291 IRYVVLDEAD 300 (397)
Q Consensus 291 l~~lVlDEah 300 (397)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9999876543
No 173
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.24 E-value=0.27 Score=50.01 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999754
No 174
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.19 E-value=1 Score=42.10 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+..+||.|+|+.-+..+...+... ++.+..++|+.+...+...+ .+..+|+|+|- +-..++++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 568999999999998887776553 78899999998877665443 35689999993 23347788899
Q ss_pred ceEEE
Q 015946 292 RYVVL 296 (397)
Q Consensus 292 ~~lVl 296 (397)
++||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 98874
No 175
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.09 E-value=2 Score=44.62 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+..+..+...+... ++.+..++|+.....+...+ .+..+|+|||- +-..++++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCC
Confidence 3568999999999999888877764 67888889888766655442 24589999994 2345788999
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
++++|+-+++.. ||.......+.+..
T Consensus 514 v~lVi~~d~d~~---G~p~s~~~~iQr~G 539 (661)
T 2d7d_A 514 VSLVAILDADKE---GFLRSERSLIQTIG 539 (661)
T ss_dssp EEEEEETTTTCC---TTTTSHHHHHHHHH
T ss_pred CCEEEEeCcccc---cCCCCHHHHHHHhC
Confidence 999999999864 44333344444443
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.98 E-value=1.7 Score=41.11 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999764
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.66 E-value=1.5 Score=41.28 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++++.||.|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 39999999999997653
No 178
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.34 E-value=3.1 Score=46.22 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
++.+++|+|++++-+..++..++... .++++..++|+.+.......+ .+..+|||||. +-..++++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccC
Confidence 46789999999999999888887753 367889999998876655433 45689999995 3345788999
Q ss_pred cceEEEcCCCc
Q 015946 291 IRYVVLDEADT 301 (397)
Q Consensus 291 l~~lVlDEah~ 301 (397)
+++||+..++.
T Consensus 883 v~~VIi~~~~~ 893 (1151)
T 2eyq_A 883 ANTIIIERADH 893 (1151)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEeCCCC
Confidence 99999988875
No 179
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.32 E-value=1.9 Score=42.16 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=54.6
Q ss_pred ceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCcce
Q 015946 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (397)
Q Consensus 218 ~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 293 (397)
.+||.|+|+.-+..++..+... ++.+..++|+.....+...+ .+...|||+|. +-..++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999988877664 77899999998877655443 34589999995 3345788999999
Q ss_pred EEE
Q 015946 294 VVL 296 (397)
Q Consensus 294 lVl 296 (397)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 180
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.30 E-value=8.8 Score=35.41 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
..++|.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999754
No 181
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.12 E-value=1.2 Score=42.65 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=55.8
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+++..+..++..+... ++.+..++|+.+...+...+ .+..+|||+|. . -..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----V-AARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----H-HHTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----h-hhcCCCccc
Confidence 4668999999999999988877664 67899999998876655433 34679999994 2 234778899
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998875
No 182
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.03 E-value=0.59 Score=40.17 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+++.-+..+...+... ++.+..++|+.+...+... ..+...|||+|.- ...++++.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV------AARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh------hhcCCCccc
Confidence 3568999999999999988877664 6788999998765543332 2356789999931 223667888
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 998876
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.02 E-value=1 Score=43.18 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.7
Q ss_pred CcEEE--EcCCCCchHHHHH
Q 015946 179 KSVVL--SSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv--~apTGsGKTl~~~ 196 (397)
..+++ .|+.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 46888 8999999998643
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.59 E-value=0.66 Score=44.17 Aligned_cols=58 Identities=12% Similarity=-0.115 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH-HHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES-ADQGFHMAKF 238 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL-a~Qv~~~~~~ 238 (397)
.|.-+++.|++|+|||...+--+....... ...+.+..++|+.-...+ ..++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~----~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPG----AGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCB----TTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccc----ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999975443333211110 001134578888755432 3344333333
No 185
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.52 E-value=1.5 Score=38.24 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+.+.||+|+|||.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 566799999999999976543
No 186
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.32 E-value=1.9 Score=37.59 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEc
Q 015946 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~ 223 (397)
..+++..++|.|||.+.+--++..+. .|.+++|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g----------~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG----------HGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH----------TTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEE
Confidence 47999999999999988777766664 466788873
No 187
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.24 E-value=2.4 Score=40.30 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+.+.||+|+|||.....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456799999999999976544
No 188
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.11 E-value=1.7 Score=41.46 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=56.5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+..+|||+|. +-..++++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 468999999999999988888765 67889999998877655443 35579999994 23457889999
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||.-
T Consensus 336 ~~Vi~~ 341 (412)
T 3fht_A 336 SVVINF 341 (412)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 998853
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.08 E-value=0.32 Score=39.87 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=17.5
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
...+.++++.|++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 456779999999999999753
No 190
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=89.06 E-value=1.2 Score=43.69 Aligned_cols=68 Identities=7% Similarity=-0.040 Sum_probs=48.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
+.++||+||+++-+..++..+... ++++..++|+...........+..+|||+|- .+ ..++++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~-e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----IS-EMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GG-GTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hH-HcCcccC-CcEE
Confidence 457999999999999988888765 7789999987432222223345689999994 22 3456666 6555
No 191
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.89 E-value=2.2 Score=42.94 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=56.1
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+..+||.|+|+.-+..++..+... ++.+..++|+.+...+... ..+..+|||+|. .-..++++.+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~ 304 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPN 304 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccC
Confidence 3568999999999999988888764 6789999999887665443 345689999995 2234678889
Q ss_pred cceEEEc
Q 015946 291 IRYVVLD 297 (397)
Q Consensus 291 l~~lVlD 297 (397)
+++||.-
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 9988853
No 192
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.89 E-value=0.86 Score=43.15 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|..+++.||+|+|||...+-
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456689999999999975443
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.87 E-value=1.7 Score=41.69 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=27.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
.|.-+++.||+|+|||... +.++..+.. .+..++|+.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~---------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQK---------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh---------cCCeEEEEeccccc
Confidence 4567999999999999743 444444433 24567887655443
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.62 E-value=13 Score=34.50 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
++-+++.|++|+|||.....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 44588999999999976543
No 195
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.52 E-value=2.2 Score=40.21 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+++.-+..++..++.. ++.+..++|+.+...+...+ .+..+|||+|. +-..++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3568999999999999988887764 67889999998876655443 34578999994 2345788999
Q ss_pred cceEEEcCCCc
Q 015946 291 IRYVVLDEADT 301 (397)
Q Consensus 291 l~~lVlDEah~ 301 (397)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999766654
No 196
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=88.45 E-value=1.1 Score=43.99 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=47.9
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
+.++||.||+++-+..++..++.. ++.+..++|............+..+|||+|. +-..++++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 568999999999999988887765 6789999985433333333345689999994 223467788 88877
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.32 E-value=0.37 Score=39.55 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.3
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..+.++++.|++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46679999999999999764
No 198
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.20 E-value=3.3 Score=39.58 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=55.5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+...|||+|. +-..++++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 458999999999999888877664 67889999998876655433 34678999995 23457889999
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 998863
No 199
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.96 E-value=3.1 Score=39.57 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+...|||+|. +-..++++.++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 458999999999999988888765 67888999998876654433 34579999994 23356788999
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 988853
No 200
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.71 E-value=0.56 Score=45.97 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
...++++.|+||||||..+ ..++..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHH
Confidence 4578999999999999975 3344443
No 201
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.55 E-value=2 Score=40.61 Aligned_cols=76 Identities=7% Similarity=0.038 Sum_probs=57.3
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+++..+..++..+... ++.+..++|+.+...+...+ .....|||+|. +-..++++.+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCccc
Confidence 3568999999999999988877664 67888999998876654433 34679999993 2234778899
Q ss_pred cceEEEcCCC
Q 015946 291 IRYVVLDEAD 300 (397)
Q Consensus 291 l~~lVlDEah 300 (397)
+++||.-...
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999875543
No 202
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.32 E-value=1.9 Score=44.22 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+..+||.|+|+.-+.+++..+... ++.+..++|+.+...+... ..+..+|||+|. +...++++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCccc
Confidence 3568999999999999998888764 7789999999987665443 345689999994 2234678889
Q ss_pred cceEEE
Q 015946 291 IRYVVL 296 (397)
Q Consensus 291 l~~lVl 296 (397)
+++||.
T Consensus 336 V~~VI~ 341 (591)
T 2v1x_A 336 VRFVIH 341 (591)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 999884
No 203
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.11 E-value=5.7 Score=41.24 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+|+..+..+...+... ++.+..++|+.....+...+ .+..+|+|||-- -..++++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hhcCccCCC
Confidence 3569999999999999988877764 67888889888766655442 345899999831 245778899
Q ss_pred cceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 291 IRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 291 l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
+++||+=+++.. ||.......+.++.+
T Consensus 508 v~lVI~~d~d~~---G~p~s~~~~iQr~GR 534 (664)
T 1c4o_A 508 VSLVAILDADKE---GFLRSERSLIQTIGR 534 (664)
T ss_dssp EEEEEETTTTSC---SGGGSHHHHHHHHGG
T ss_pred CCEEEEeCCccc---CCCCCHHHHHHHHCc
Confidence 999999888854 454445555555544
No 204
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=87.09 E-value=2 Score=40.12 Aligned_cols=74 Identities=23% Similarity=0.327 Sum_probs=55.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+..+|+|+|. .+ ..++++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VM-SRGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----TH-HHHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCCccc
Confidence 4568999999999999988887764 67889999998876655433 34679999994 12 23667888
Q ss_pred cceEEEcC
Q 015946 291 IRYVVLDE 298 (397)
Q Consensus 291 l~~lVlDE 298 (397)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 99888643
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.97 E-value=0.5 Score=55.02 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
|+++++.||+|+|||....--+.... . ++.+++|+.....+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~-~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ-R---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH-T---------TTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H---------cCCcEEEEEccccc
Confidence 68999999999999987544444332 2 46688888765443
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.38 E-value=1.4 Score=47.39 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
..+++++||+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997543
No 207
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.86 E-value=5.6 Score=37.52 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=50.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~ 259 (397)
-+++.+|.|+|||...+- ++...... ..+..++|+..-..+... .++.+ ++..
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~~-------g~g~~vlyId~E~s~~~~---ra~~l----Gvd~------------ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMRQ-------YPDAVCLFYDSEFGITPA---YLRSM----GVDP------------ 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHHH-------CTTCEEEEEESSCCCCHH---HHHHT----TCCG------------
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHhc-------CCCceEEEEeccchhhHH---HHHHh----CCCH------------
Confidence 589999999999976544 33333331 025578888876655332 23343 2211
Q ss_pred HHHhcCCccEEEeChHH---H-HHHHhc-CCCCCCCcceEEEcCCCccc
Q 015946 260 EDVSNAPIGMLIATPSE---V-LQHIED-RNVSCDDIRYVVLDEADTLF 303 (397)
Q Consensus 260 ~~~~~~~~~IlV~TP~~---L-~~~l~~-~~~~l~~l~~lVlDEah~~l 303 (397)
-++++..|.. + +.++.. ..+.-..+++||||-+..|.
T Consensus 83 -------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 1244444433 3 222221 11233568999999999886
No 208
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.72 E-value=8.4 Score=36.26 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+.+.||+|+|||....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35578999999999998643
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.66 E-value=1.1 Score=41.85 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpi 199 (397)
.|+-+++.|++|+|||.....-+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999998655433
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=0.22 Score=49.24 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=36.0
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 138 EVVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+|++++--+.+.+.|.+.= +.+|.-++...+ ..-+.+|+.||+|+|||+..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45668999998888888876531 122222222211 12468999999999999863
No 211
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.16 E-value=2.1 Score=45.17 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998643
No 212
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.45 E-value=1.2 Score=44.89 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=27.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHH-HHhCCCcEEEEcCCCCchHHHH
Q 015946 153 IKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 153 ~~~l~~~g~~~~~~iQ~~ai~-~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..|.+.|. +++.+..-+. .+..|..++++||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344556663 2333333333 4567889999999999999753
No 213
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.06 E-value=5.5 Score=38.28 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecC--------CCChHHHHHHh----cCCccEEEeChHHHHHHHh
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~ 282 (397)
.+.++||.|+++.-+..+...+... ++.+..++| +.+...+...+ .+.+.|||+|. +-
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~------~~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS------VG 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG------GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC------cc
Confidence 4668999999999999988887765 778888988 55544433322 34578999993 12
Q ss_pred cCCCCCCCcceEEEcCCC
Q 015946 283 DRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 283 ~~~~~l~~l~~lVlDEah 300 (397)
..++++..+++||+-+..
T Consensus 430 ~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGGGSTTCCEEEESSCC
T ss_pred ccCCCchhCCEEEEeCCC
Confidence 346778889988865443
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.82 E-value=0.27 Score=45.82 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=32.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHH-HHHH--HhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCV-GIPA--VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~-ai~~--i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|++++-.+.+++.|.+.-. .+.... .+.. +..++.+++.||+|+|||+..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34578888877777777764300 011000 0111 134678999999999999864
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.35 E-value=10 Score=37.99 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
.-+.+.|++|+|||.....
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 3588999999999986543
No 216
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=82.65 E-value=0.28 Score=41.45 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+ .+...|||+|. . ...++++.++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----V-AARGIDIPDV 99 (170)
Confidence 458999999999998888777654 67788888887765544333 23578999993 1 2235677778
Q ss_pred ceEEEcC
Q 015946 292 RYVVLDE 298 (397)
Q Consensus 292 ~~lVlDE 298 (397)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 8777533
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.50 E-value=1.7 Score=38.14 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=28.3
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 015946 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 161 ~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
+.--+.-|..++..+..|.-+.+.||+|+|||..+-
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 333345677788888899999999999999998643
No 218
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.98 E-value=0.46 Score=47.20 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=34.6
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++|--+.+.+.|.+.= +.+|--++... +.--+.+|+.||.|+|||+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4568999998888888886541 11111111111 123468999999999999754
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.89 E-value=1.6 Score=42.12 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred CcceEEEcCCCccccCC---CHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 290 DIRYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~---f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
.-.++|+||||.++... +...+..+++..+. .+.-+++.|-++..-
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-------~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-------YNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-------GTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-------hCeEEEEEcCCHHHh
Confidence 45789999999998632 45566677766653 356677777766543
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.41 E-value=0.41 Score=47.30 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=33.6
Q ss_pred ccccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 138 EVVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+|++++--+...+.|.+.= +.+|--++... +.--+.+|+.||+|+|||+..
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 34567999987777777765431 11111111111 112368999999999999864
No 221
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.40 E-value=1.5 Score=36.48 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+..+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 222
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=80.38 E-value=3.4 Score=43.04 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=48.3
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
+.++||.||+++-+..++..+... ++.+..++|............+..+|||+|- . -..++++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v-~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----I-SEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----G-GGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----h-hhcceeeC-CcEEE
Confidence 568999999999999888877654 7889999985222222222345689999994 2 23466777 88766
No 223
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.08 E-value=6.3 Score=39.00 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=49.5
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecC--------CCChHHHHHH---hc--CCccEEEeChHHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDV---SN--APIGMLIATPSEVLQHI 281 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~---~~--~~~~IlV~TP~~L~~~l 281 (397)
.+.++||.|+++.-+..+...+........+.+..++| +.+...+... .. +..+|||+|- +
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~ 461 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------V 461 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------C
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------h
Confidence 35689999999999999999998876544566666665 4443333322 22 4579999994 2
Q ss_pred hcCCCCCCCcceEEEcC
Q 015946 282 EDRNVSCDDIRYVVLDE 298 (397)
Q Consensus 282 ~~~~~~l~~l~~lVlDE 298 (397)
-..++++.++++||.=+
T Consensus 462 ~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYE 478 (555)
T ss_dssp TTCCEETTSCSEEEEES
T ss_pred hhcCCccccCCEEEEeC
Confidence 23467888999888643
No 224
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=79.88 E-value=2.9 Score=39.81 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=47.1
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+..+|||+|. +-..++++.++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCC
Confidence 458999999999999888777653 67888999988766654433 34578999994 22346778888
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||.-
T Consensus 350 ~~Vi~~ 355 (414)
T 3eiq_A 350 SLVINY 355 (414)
T ss_dssp SCEEES
T ss_pred CEEEEe
Confidence 888753
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.84 E-value=7.4 Score=36.46 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
++-+++.|++|+|||.....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44588999999999976543
No 226
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.69 E-value=3.7 Score=47.25 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~ 257 (397)
|+-+.+.+|.|||||... ++++....+ .+..++++.+-.+|.... ++.+ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~---------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKL----GVDI---------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHT----TCCG----------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHc----CCCH----------
Confidence 467999999999999875 444444444 477899998877776553 3343 3322
Q ss_pred HHHHHhcCCccEEEeChHHHHHHHhc--CCCCCCCcceEEEcCCCccccC
Q 015946 258 ALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDR 305 (397)
Q Consensus 258 ~~~~~~~~~~~IlV~TP~~L~~~l~~--~~~~l~~l~~lVlDEah~~l~~ 305 (397)
-+++|.-|..-.++|.- ..+.-..+++||||.+..+...
T Consensus 1484 ---------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1484 ---------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp ---------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCT
T ss_pred ---------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcc
Confidence 12666666433222211 1111244789999998877654
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.63 E-value=0.49 Score=46.66 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=33.0
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++|=-+.+.+.|.+.= +.+|--++... +...+.+|+.||+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 4568999987777777765431 11111111111 112367999999999999864
No 228
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=79.41 E-value=3.9 Score=37.43 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHH-HHHHhCCC-----cEEEEcCCCCchHHHHH
Q 015946 151 EMIKAVEKMGLFVPSEIQCVG-IPAVLNGK-----SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 151 ~l~~~l~~~g~~~~~~iQ~~a-i~~i~~g~-----dvlv~apTGsGKTl~~~ 196 (397)
.+.+.|+-.||. +++... +...+.|+ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 788888888885 455333 45566554 59999999999998765
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.38 E-value=0.88 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
..|+-++++||+|+|||...-
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 357789999999999998643
No 230
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=79.34 E-value=1.3 Score=42.51 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHhCCCcEEEEcCCCCchHHHH
Q 015946 174 AVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+..|..++++||||||||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 4568999999999999999854
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.30 E-value=5.5 Score=39.04 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
++-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578889999999986544
No 232
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=79.24 E-value=12 Score=36.80 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=52.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+...+|++....-+..+.+.+... +.++..++|+.+...+...+ .+..+|||||+..+- .++++.++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccC
Confidence 445555555566665555555543 34888999998866654432 456799999966543 26789999
Q ss_pred ceEEEcCCC
Q 015946 292 RYVVLDEAD 300 (397)
Q Consensus 292 ~~lVlDEah 300 (397)
++||+..+.
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998877
No 233
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.08 E-value=4.9 Score=36.89 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=51.1
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
.+.++||.|++++-+..++..+. .+..++|+.+...+...+ .+..+|||+|. .+ ..++++.+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VA-SRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HH-HTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cc-ccCCCccC
Confidence 46689999999998887665443 467788888766655433 34579999994 22 34778899
Q ss_pred cceEEEcCC
Q 015946 291 IRYVVLDEA 299 (397)
Q Consensus 291 l~~lVlDEa 299 (397)
+++||.-..
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 998887443
No 234
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.07 E-value=5 Score=39.38 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpi 199 (397)
+.++++|++|+|||....--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357888999999998754433
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.00 E-value=2.6 Score=39.96 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+.++++.||+|+|||+..
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999864
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.96 E-value=0.34 Score=44.60 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=28.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQ-CVGIPAVL--NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ-~~ai~~i~--~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|++++-.+.+.+.|.+.=. .|+. ..++..+- -.+.+++.||+|+|||+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34579999877788777765311 1221 12222211 1234999999999999764
No 237
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.85 E-value=4.6 Score=39.69 Aligned_cols=69 Identities=4% Similarity=0.002 Sum_probs=49.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
+.++||.||++.-+..++..+... ++.+..++|............+..+|||+|. +-..++++.+ ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD------ISEMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG------GGGSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC------HHHhCcCCCC-CEEE
Confidence 458999999999999988877654 6788888887553322223345689999994 2334677777 6665
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.78 E-value=2.5 Score=42.38 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+-..++.++..|.++++.||+|+|||...
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3344455566778899999999999999753
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.63 E-value=5 Score=46.14 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcC
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~P 224 (397)
.|..+++.|++|+|||...+--+. .+.. .+..++|+.-
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~-~aa~---------~g~~VlyiS~ 768 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIA-AAQR---------EGKTCAFIDA 768 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHH---------TTCCEEEECT
T ss_pred CCceEEEECCCCCCcHHHHHHHHH-HHHH---------cCCCeEEEec
Confidence 356799999999999975444333 3332 2446777653
No 240
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.53 E-value=9.6 Score=40.32 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhh-------hcCCcceeeecCCCChHHHHHHhc---------CCccEEEeChHHHHH
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFIS-------HCARLDSSMENGGVSSKALEDVSN---------APIGMLIATPSEVLQ 279 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~---------~~~~IlV~TP~~L~~ 279 (397)
+..+||.+|++.-+..++..+.... ...++.+..++|+.+...+...+. +...|||+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 5689999999999999888877522 224788999999998877765543 34689999952
Q ss_pred HHhcCCCCCCCcceEEE
Q 015946 280 HIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 280 ~l~~~~~~l~~l~~lVl 296 (397)
-..++++.++++||-
T Consensus 379 --ae~GidIp~v~~VId 393 (773)
T 2xau_A 379 --AETSLTIDGIVYVVD 393 (773)
T ss_dssp --HHHTCCCTTEEEEEE
T ss_pred --HHhCcCcCCeEEEEe
Confidence 223678888987763
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.10 E-value=1.1 Score=42.00 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+...+..|.++++.||+|+|||...
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999754
No 242
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.06 E-value=1.6 Score=39.35 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999753
No 243
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=77.20 E-value=6.1 Score=40.65 Aligned_cols=69 Identities=3% Similarity=-0.031 Sum_probs=48.6
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
..++||.|+|+.-+..++..+... ++.+..++|...............+|||+|. . -..++++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v-~~rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----I-SEMGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----G-GGTTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----H-HHcCcccC-ceEEE
Confidence 457999999999999988888765 6788888885333222223345689999995 2 33456675 77763
No 244
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.17 E-value=1.1 Score=40.99 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.0
Q ss_pred HhCCCcEEEEcCCCCchHHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~ 196 (397)
+..|.-+++.||||||||...-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 3467789999999999997643
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.91 E-value=1.2 Score=38.62 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|+-++++||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998653
No 246
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.65 E-value=4.7 Score=36.73 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+.++++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 247
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.21 E-value=1.3 Score=38.12 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.3
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357889999999999998653
No 248
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=76.11 E-value=5.2 Score=39.37 Aligned_cols=69 Identities=7% Similarity=0.007 Sum_probs=46.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
+.++||.||++.-+..++..+... ++.+..++|............+..+|||+|- . -..++++.+ ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v-~~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----I-SEMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----C-C---CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----h-HHhCeecCC-CEEE
Confidence 458999999999999988888765 6788888885332222222234579999994 1 223667777 6555
No 249
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=76.09 E-value=1.9 Score=41.31 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| +++-|+||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778886 788899999999875
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.04 E-value=7.2 Score=36.12 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
++-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999976544
No 251
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=75.86 E-value=11 Score=39.10 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=54.7
Q ss_pred CceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHH---HHHHhc---CCccEEEeChHHHHHHHhcCCCCCCC
Q 015946 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA---LEDVSN---APIGMLIATPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 217 ~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~~---~~~~IlV~TP~~L~~~l~~~~~~l~~ 290 (397)
...||+|+|+.-+..+...+... ++.+..++|+.+... +..... +..+|||+|- +-..++++ +
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-C
Confidence 34577799998888877777663 678999999998774 333344 4479999995 23456788 8
Q ss_pred cceEEEcCCCcc
Q 015946 291 IRYVVLDEADTL 302 (397)
Q Consensus 291 l~~lVlDEah~~ 302 (397)
+++||.-.+..+
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998877654
No 252
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=75.86 E-value=1.5 Score=41.55 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=17.7
Q ss_pred HhCCCcEEEEcCCCCchHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~ 194 (397)
+..|..+++.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45789999999999999984
No 253
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.26 E-value=0.64 Score=45.75 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=33.8
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++|=-+.+.+.|.+. -+.+|--++...+ .--+.+|+.||.|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 456899998667777766543 1222222222211 12368999999999999854
No 254
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=75.13 E-value=2.7 Score=41.15 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+++.||||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4556899999999999753
No 255
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.11 E-value=3.3 Score=36.49 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCCchHHHH
Q 015946 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 151 ~l~~~l~~~g~~~~~~iQ~~ai~~i~~g----~dvlv~apTGsGKTl~~ 195 (397)
.+.+-|+-.|+. +..+ ..++..++.+ +.+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 566666656653 3344 4445555544 35999999999999754
No 256
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=74.93 E-value=2.3 Score=40.24 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678886 788999999999875
No 257
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=74.74 E-value=31 Score=29.28 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=53.1
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHHHhcccc---CCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCc-ceeee
Q 015946 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL---LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL-DSSME 250 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~-~v~~~ 250 (397)
.+.|..+-+.+..|-|=|+.+.+|+.......... ......+.++|||-........+...+... ++ .+
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v--- 89 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEV--- 89 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEE---
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCee---
Confidence 34566788889999999999999975432221110 011223456777766666655555555443 32 22
Q ss_pred cCCCChHHHHHHhcCCccEEEeChHHHHHHHhcC--------CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015946 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (397)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~--------~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~ 322 (397)
..+.+....+..+... ...-...++||+| .+ |-+.. +..+...++.....
T Consensus 90 ------------------~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD-~~-lp~~~-G~el~~~lr~~~~~- 147 (206)
T 3mm4_A 90 ------------------EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMD-CQ-MPEMD-GYEATREIRKVEKS- 147 (206)
T ss_dssp ------------------EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEE-SC-CSSSC-HHHHHHHHHHHHHT-
T ss_pred ------------------eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEc-CC-CCCCC-HHHHHHHHHhhhhh-
Confidence 1223444555555432 2222357889998 22 43332 43333333332111
Q ss_pred hccCCCCceEEEEeccCCCChhHHHhhh
Q 015946 323 LKSNGQGFQTILVTAAIAELSSLMECLE 350 (397)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~~~l~~~l~ 350 (397)
..+.+.+|++|+.-.........+.
T Consensus 148 ---~~~~~piI~ls~~~~~~~~~~~~~~ 172 (206)
T 3mm4_A 148 ---YGVRTPIIAVSGHDPGSEEARETIQ 172 (206)
T ss_dssp ---TTCCCCEEEEESSCCCHHHHHHHHH
T ss_pred ---cCCCCcEEEEECCCCcHHHHHHHHh
Confidence 1257899999998644434444433
No 258
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.55 E-value=2 Score=37.41 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|+-++++||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46779999999999998643
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=74.29 E-value=1.5 Score=37.63 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|.-+++.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999764
No 260
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.15 E-value=2.2 Score=41.57 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667788987 678899999999876
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.13 E-value=1.3 Score=38.41 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.8
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999854
No 262
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.12 E-value=2.1 Score=40.82 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=19.2
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 172 i~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
+..++.|.| ++..|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445667886 788899999999875
No 263
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.75 E-value=1.5 Score=40.22 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-hCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQC-VGIPAV-LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~-~ai~~i-~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-.+.+++.+...-. .+... ..+..+ ..++.+++.||+|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4568888777777777754310 00000 000001 13578999999999999764
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.74 E-value=39 Score=30.94 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|+-+.+.+++|+|||.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455677889999999976443
No 265
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=73.72 E-value=2.4 Score=41.37 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.2
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAYL 196 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~~ 196 (397)
.+..++.|.| ++..|+||||||....
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3455678886 7888999999998753
No 266
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.56 E-value=0.82 Score=41.03 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=31.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++.-.+.+...+...-.. . -...++..+. -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 356788887777766666543110 0 0112222221 1245999999999999754
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.49 E-value=1.7 Score=36.69 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
++.++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999998654
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.47 E-value=6.4 Score=46.02 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreL 228 (397)
.|.-+++.||+|+|||...+- ++..+.. .+..++|+.--..+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq-ia~~~a~---------~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQ-VIAAAQR---------EGKTCAFIDAEHAL 423 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHH-HHHHHHT---------TTCCEEEECTTSCC
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHh---------cCCeEEEEEcCCCH
Confidence 356799999999999976443 3333332 24467777644433
No 269
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=73.46 E-value=16 Score=37.91 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhc--------------------------------CCcceeeecCCCChHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHC--------------------------------ARLDSSMENGGVSSKALEDV 262 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~ 262 (397)
.+..+||.||++.-+..++..+...... ....+..++|+.+...+...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3568999999999999988877654211 12358889999988776554
Q ss_pred h----cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEc
Q 015946 263 S----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (397)
Q Consensus 263 ~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 297 (397)
. .+...|||+|.- -..++++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT~~------l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPT------LAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECGG------GGGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEChH------HhcccCCCceEEEEeC
Confidence 3 356899999942 2347788888875543
No 270
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=73.42 E-value=2.6 Score=39.92 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=21.1
Q ss_pred HHHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 170 VGIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 170 ~ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
..+..++.|.| ++..|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788887 778999999999875
No 271
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=73.34 E-value=5.2 Score=41.31 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecC--------CCChHHHHHHh----c-CCccEEEeChHHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----N-APIGMLIATPSEVLQHI 281 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~----~-~~~~IlV~TP~~L~~~l 281 (397)
.+.++||.|+++.-+..+...+...+....+.+..++| +.+...+...+ . +...|||+|- +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 35689999999999999999888765444477777755 55544443332 2 4578999993 2
Q ss_pred hcCCCCCCCcceEEEcCC
Q 015946 282 EDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (397)
...++++.++++||.=+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 335778899998886443
No 272
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=73.32 E-value=2.6 Score=40.53 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.4
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 172 i~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
+..++.|.| ++..|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445678886 788999999999875
No 273
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=73.17 E-value=2.6 Score=40.52 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678886 788999999999775
No 274
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=73.12 E-value=2.6 Score=40.11 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445678886 788899999999875
No 275
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=73.08 E-value=2.6 Score=40.20 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=19.3
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 172 i~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
+..++.|.| ++..|+||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 445678886 788999999999875
No 276
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.01 E-value=2.6 Score=40.65 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455678886 778899999999874
No 277
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=72.93 E-value=2.6 Score=40.24 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678886 788999999999875
No 278
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=72.81 E-value=2.6 Score=40.32 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678887 688899999999875
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=72.80 E-value=1.8 Score=37.04 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+.+.||+|||||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57778999999999998643
No 280
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=72.72 E-value=2.6 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 172 i~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
+..++.|.| ++..|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445678886 788999999999875
No 281
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=72.66 E-value=1.9 Score=37.90 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.9
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..|+-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999754
No 282
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=72.64 E-value=47 Score=31.17 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
.++++|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998654
No 283
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=72.63 E-value=2.7 Score=40.32 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678887 678899999999875
No 284
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=72.37 E-value=2.6 Score=40.43 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3455678886 788999999999865
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.36 E-value=1.8 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 286
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.31 E-value=2.6 Score=40.28 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=19.9
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3455678886 788899999999875
No 287
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.24 E-value=2.5 Score=41.32 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 170 VGIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 170 ~ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
..+..++.|.| ++..|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788887 788899999999875
No 288
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.20 E-value=1.7 Score=41.18 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999864
No 289
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.03 E-value=2.4 Score=40.83 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=20.5
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566788886 778899999999875
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.92 E-value=1.6 Score=37.03 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778999999999999854
No 291
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.88 E-value=3.1 Score=43.10 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=50.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHh--hhcCCcceeeecCC--------CChHHHHHHh----cCCccEEEeChHHHHHHH
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFI--SHCARLDSSMENGG--------VSSKALEDVS----NAPIGMLIATPSEVLQHI 281 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~----~~~~~IlV~TP~~L~~~l 281 (397)
+.++||.|+++..+..+...+... ....|+.+..++|+ .+...+...+ .+..+|||+|- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 678999999999999998887754 22236788889998 6666554433 34578999994 2
Q ss_pred hcCCCCCCCcceEEE
Q 015946 282 EDRNVSCDDIRYVVL 296 (397)
Q Consensus 282 ~~~~~~l~~l~~lVl 296 (397)
-..++++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 335678888988873
No 292
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.39 E-value=2.5 Score=39.28 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+.++++.|++|+|||+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999754
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.37 E-value=2.1 Score=40.96 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.4
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|..+++.||||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35557999999999999764
No 294
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=71.36 E-value=2.3 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.6
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666778887 678899999999876
No 295
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.33 E-value=4.7 Score=48.59 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCcHHH-HHHH---HHHhCCCcEEEEcCCCCchHHHHHH
Q 015946 150 AEMIKAVEKMGLFVPSEIQ-CVGI---PAVLNGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 150 ~~l~~~l~~~g~~~~~~iQ-~~ai---~~i~~g~dvlv~apTGsGKTl~~~l 197 (397)
..+.+.+.+.|+. +++.+ ..++ ..+...+.++++||||||||.++-.
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4566777788885 55544 3332 2344567899999999999998754
No 296
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=71.14 E-value=13 Score=38.68 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhc--------------------------CCcceeeecCCCChHHHHHHh----cC
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHC--------------------------ARLDSSMENGGVSSKALEDVS----NA 265 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~--------------------------~~~~v~~~~g~~~~~~~~~~~----~~ 265 (397)
+..+||.||++.-+..++..+...... .+..+..++|+.+...+.... .+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 568999999999999888877653211 123577899998887665443 35
Q ss_pred CccEEEeChHHHHHHHhcCCCCCCCcceEEE
Q 015946 266 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (397)
Q Consensus 266 ~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 296 (397)
...|||+|. .-..++++..+.+||-
T Consensus 322 ~~~vlvaT~------~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP------TLAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS------TTTSSSCCCBSEEEEC
T ss_pred CCeEEEECc------HHhccCCCCceEEEEc
Confidence 679999995 2335778888877553
No 297
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=71.05 E-value=2.1 Score=40.66 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
++-++|.||||+|||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999997643
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.01 E-value=2.2 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999864
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=70.88 E-value=2.1 Score=37.87 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHhCCCcEEEEcCCCCchHHHHH
Q 015946 174 AVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
++-.|.-+++.||+|+|||..+-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 35578889999999999998643
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=70.81 E-value=2.8 Score=36.58 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
..|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367789999999999998543
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=70.78 E-value=2.3 Score=35.71 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998644
No 302
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=70.67 E-value=3 Score=40.33 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAYL 196 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~~ 196 (397)
.+..++.|.| +++.|+||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3455678886 7888999999998753
No 303
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=70.67 E-value=5.7 Score=41.30 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCcceE
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 294 (397)
.+.++||.|+|++-+..++..++.. ++.+..++|+..... ..+.+.+|||+|. .+.+ ++++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc-cCCCC-CcEE
Confidence 3568999999999999988877653 788999999987654 2345569999994 2232 45565 8877
Q ss_pred E
Q 015946 295 V 295 (397)
Q Consensus 295 V 295 (397)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=70.67 E-value=1.9 Score=35.39 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 305
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=70.65 E-value=2.8 Score=40.43 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=19.1
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 172 i~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
+..++.|.| ++..|+||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 445667886 788999999999875
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.59 E-value=2.2 Score=36.29 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
|+-+.+.||+|+|||...
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345789999999999854
No 307
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=70.56 E-value=1.9 Score=38.58 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=30.0
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
...|+++.-.+.+++.+...- +..+..++.. .....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 456888877777776665420 1011000000 0112357999999999999764
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.41 E-value=2.1 Score=41.14 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
..|..++++||||||||...-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467789999999999997643
No 309
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=70.34 E-value=3.2 Score=40.95 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=19.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445678886 788899999999875
No 310
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=70.30 E-value=2 Score=40.46 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+-++|.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34789999999999764
No 311
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.28 E-value=2.2 Score=40.72 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.2
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556678886 778999999999875
No 312
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.26 E-value=2 Score=40.35 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999764
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=69.96 E-value=1.9 Score=36.21 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+.++||+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 466789999999999987653
No 314
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.90 E-value=2.3 Score=36.84 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHhCCCcEEEEcCCCCchHHHH
Q 015946 174 AVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~~ 195 (397)
.+..|.-+.+.||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888999999999999864
No 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.68 E-value=5.5 Score=48.63 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCCCcHHH-HHHHH---HHhCCCcEEEEcCCCCchHHHHHH
Q 015946 150 AEMIKAVEKMGLFVPSEIQ-CVGIP---AVLNGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 150 ~~l~~~l~~~g~~~~~~iQ-~~ai~---~i~~g~dvlv~apTGsGKTl~~~l 197 (397)
..+.+.+.++|+. +.+.+ .+++. .+.-.+.++++||||||||.++-+
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 5566777889985 55544 33333 233456799999999999998753
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.64 E-value=2.2 Score=36.14 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..++++|+.|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999864
No 317
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.59 E-value=11 Score=32.18 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCCcceEEEcCCCccc--cCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC--hhHHHhhhhccCCceeeEEee
Q 015946 288 CDDIRYVVLDEADTLF--DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL--SSLMECLERDNAGKVTAMLLE 363 (397)
Q Consensus 288 l~~l~~lVlDEah~~l--~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--~~l~~~l~~~~~~~v~~~~~~ 363 (397)
..+.+++|+||+..|- +..|...+..++.. ...+|+-++|++.. ..++..+...+.+.+- .
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----------~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~----~ 167 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----------PGTIILGTIPVPKGKPLALVEEIRNRKDVKVF----N 167 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----------SSCCEEEECCCCCSSCCTTHHHHHTTCCSEEE----E
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----------CCcEEEEEeecCCCCchHHHHHHeecCCcEEE----E
Confidence 4667899999988773 33354444444431 22355557787544 2555555443322222 1
Q ss_pred cCceeeEEeccChHHHHHHHHHHHH
Q 015946 364 MDQAEVFDLTESQDALKKKVVEAMD 388 (397)
Q Consensus 364 v~~~~~~~~~~~~~~~~~~l~~~~~ 388 (397)
+.+ .+.+.+...|.+.+.
T Consensus 168 ~~~-------~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 168 VTK-------ENRNHLLPDIVTCVQ 185 (189)
T ss_dssp CCS-------SSGGGHHHHHHHHHT
T ss_pred eCh-------HhHHHHHHHHHHHHH
Confidence 221 345666666665553
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=69.44 E-value=2.5 Score=37.07 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCCchHHH
Q 015946 177 NGKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~ 194 (397)
.|+-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999854
No 319
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.35 E-value=2.6 Score=40.79 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.7
Q ss_pred HHHhCCCc--EEEEcCCCCchHHHH
Q 015946 173 PAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 173 ~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
..++.|.| ++..|+||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44678886 778899999999875
No 320
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.18 E-value=4.5 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQML 203 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l 203 (397)
.+.+++|.|.||||||.+.-.-++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999987554444433
No 321
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.09 E-value=1.2 Score=40.73 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=32.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~--~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|+++.-.+.+...+...-.. . -...++..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 356788888777777766553110 0 0011222211 1235999999999999754
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=69.04 E-value=2.1 Score=38.63 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++++||+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999754
No 323
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=68.68 E-value=11 Score=37.42 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeec--------CCCChHHHHHHh----c-CCccEEEeChHHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN--------GGVSSKALEDVS----N-APIGMLIATPSEVLQHI 281 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~--------g~~~~~~~~~~~----~-~~~~IlV~TP~~L~~~l 281 (397)
.+.++||.|+++..+..+...+.......++++..++ |+.+...+...+ . +.++|||+|- +
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC------c
Confidence 4668999999999999988888765333334444443 444444333322 2 3478999994 1
Q ss_pred hcCCCCCCCcceEEEcCC
Q 015946 282 EDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (397)
-..++++.++++||.=+.
T Consensus 463 ~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp ----------CEEEEETC
T ss_pred hhcCCCchhCCEEEEeCC
Confidence 234678899999886433
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=68.46 E-value=2.5 Score=36.48 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999853
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=68.36 E-value=2.6 Score=36.23 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+++.|+.|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999998643
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.91 E-value=20 Score=35.85 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=64.6
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCC
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~ 255 (397)
..|.-+++.|++|+|||.....-+- .+.. .+..++++++... ..|+...+..+ ++.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g-~~~~---------~G~~vi~~~~ee~-~~~l~~~~~~~----g~~--------- 334 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVE-NACA---------NKERAILFAYEES-RAQLLRNAYSW----GMD--------- 334 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHH-HHHT---------TTCCEEEEESSSC-HHHHHHHHHTT----SCC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH-HHHh---------CCCCEEEEEEeCC-HHHHHHHHHHc----CCC---------
Confidence 3567799999999999976443222 2211 2335677765433 23444333221 211
Q ss_pred hHHHHHHhcCCccEEEe-----ChHHHHHHHhcCCCCCCCcceEEEcCCCccccCC-----CHHHHHHHHHHhhhhhhcc
Q 015946 256 SKALEDVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----FGPEISKILNPLKDSALKS 325 (397)
Q Consensus 256 ~~~~~~~~~~~~~IlV~-----TP~~L~~~l~~~~~~l~~l~~lVlDEah~~l~~~-----f~~~l~~il~~l~~~~~~~ 325 (397)
..... ......+.-. +.|.....+... ....+.++||+| -=.-++.. ....+..++..+..
T Consensus 335 ~~~~~--~~g~~~~~~~~p~~LS~g~~q~~~~a~-~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~----- 405 (525)
T 1tf7_A 335 FEEME--RQNLLKIVCAYPESAGLEDHLQIIKSE-INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ----- 405 (525)
T ss_dssp HHHHH--HTTSEEECCCCGGGSCHHHHHHHHHHH-HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHH--hCCCEEEEEeccccCCHHHHHHHHHHH-HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-----
Confidence 11100 0000111111 333333332221 123567899999 54555666 56666667766653
Q ss_pred CCCCceEEEEeccC
Q 015946 326 NGQGFQTILVTAAI 339 (397)
Q Consensus 326 ~~~~~q~i~~SATl 339 (397)
.+.-+|++|-..
T Consensus 406 --~g~tvilvsh~~ 417 (525)
T 1tf7_A 406 --EEITGLFTNTSD 417 (525)
T ss_dssp --TTCEEEEEEECS
T ss_pred --CCCEEEEEECcc
Confidence 356677777665
No 327
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.58 E-value=4.9 Score=44.60 Aligned_cols=39 Identities=31% Similarity=0.413 Sum_probs=28.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchh
Q 015946 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (397)
Q Consensus 182 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptre 227 (397)
+|.|+.|||||.+.+--+...+... ..+.++|+|+|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-------TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-------CCCCcEEEEecCcc
Confidence 7889999999998776666655542 13568899988764
No 328
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=67.34 E-value=8.8 Score=36.72 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=50.2
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCccee-eecCCCChHHHHHHhcCCccEEEe----ChHHHHHHHhcCCCCCCC
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIA----TPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~-~~~g~~~~~~~~~~~~~~~~IlV~----TP~~L~~~l~~~~~~l~~ 290 (397)
+.++||.|+++.-+..++..+... ++.+. .++|. .........+..+|||+ |. +-..++++.+
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~--~r~~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH--HHHHHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc--chHHHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 468999999999999988887764 67777 67764 22222233456899999 63 2234678898
Q ss_pred -cceEEEcCC
Q 015946 291 -IRYVVLDEA 299 (397)
Q Consensus 291 -l~~lVlDEa 299 (397)
+++||.-.+
T Consensus 320 ~v~~VI~~~~ 329 (414)
T 3oiy_A 320 RIKYVIFWGT 329 (414)
T ss_dssp TCCEEEEESC
T ss_pred ccCEEEEECC
Confidence 898885433
No 329
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=67.18 E-value=2.4 Score=35.39 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|..+++.|+.|||||...-
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999998643
No 330
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=66.94 E-value=7.7 Score=43.15 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=41.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHHhccccC--CCCCCCCceEEEcCchhHHHHHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKF 238 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lpil~~l~~~~~~~--~~~~~~~~~lvl~PtreLa~Qv~~~~~~ 238 (397)
..+|.|+-|||||.+..--++..+....... .......++|+|+=|+.=+..+...+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999998877777776421000 0011234899999999988887776654
No 331
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.70 E-value=3 Score=38.24 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
..+++.||+|+|||...-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999997643
No 332
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=66.44 E-value=2.9 Score=35.11 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
|.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567999999999999864
No 333
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.42 E-value=2.5 Score=39.02 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 334
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=66.34 E-value=5.5 Score=40.55 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~lpil~~l~ 204 (397)
+.+++|.|.||||||.+...-++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999876555555443
No 335
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.31 E-value=2.9 Score=39.85 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
..++++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999764
No 336
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=66.11 E-value=15 Score=38.17 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhc-----------------------------CCcceeeecCCCChHHHHHHh---
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHC-----------------------------ARLDSSMENGGVSSKALEDVS--- 263 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~-----------------------------~~~~v~~~~g~~~~~~~~~~~--- 263 (397)
+..+||.||++.-+..++..+...... ....+..++|+.+...+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 568999999999999888877653211 123488899998877765432
Q ss_pred -cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 264 -NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 264 -~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
.+...|||+|.- -..++++..+.+ |||...
T Consensus 317 ~~g~~~vlvaT~~------l~~Gvdip~~~~-VI~~~~ 347 (720)
T 2zj8_A 317 RKGIIKAVVATPT------LSAGINTPAFRV-IIRDIW 347 (720)
T ss_dssp HTTSSCEEEECST------TGGGCCCCBSEE-EECCSE
T ss_pred HCCCCeEEEECcH------hhccCCCCceEE-EEcCCe
Confidence 345799999952 234677888776 555443
No 337
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.88 E-value=2.7 Score=41.46 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=28.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~----~g~dvlv~apTGsGKTl~~~ 196 (397)
...|+++.-.+.+++.+... +..+. .++++|+.||+|+|||+...
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 34577776666666555421 11222 34689999999999997653
No 338
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.84 E-value=2.8 Score=34.84 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++++|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 339
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=65.71 E-value=3.1 Score=40.16 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=20.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678886 788899999999875
No 340
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=65.48 E-value=15 Score=38.88 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceee--------ecCCCChHHHHHHh----c-CCccEEEeChHHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM--------ENGGVSSKALEDVS----N-APIGMLIATPSEVLQHI 281 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~--------~~g~~~~~~~~~~~----~-~~~~IlV~TP~~L~~~l 281 (397)
.+.++||.|+++..+..+...+.......++++.. ++|+.+...+...+ . +.++|||+|- +
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~------~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC------c
Confidence 45799999999999999998887643322333333 34445444433322 2 4578999994 2
Q ss_pred hcCCCCCCCcceEEEcCC
Q 015946 282 EDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (397)
-..++++..+++||.=+.
T Consensus 704 ~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -------CCCSEEEEESC
T ss_pred hhcCCCchhCCEEEEeCC
Confidence 234678899999886433
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=65.37 E-value=2.9 Score=34.47 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
-+++.|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 342
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.90 E-value=2.2 Score=42.67 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
..+.+++.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999864
No 343
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=64.72 E-value=2.5 Score=42.29 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHH----HHhcCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE----DVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
+.++||.|+++.-+..++..+.. .++.+.+++|+.....+. ....+..+|||+|- +-..++++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCCccCC
Confidence 46899999999999887776654 367888888887654322 22345578999995 23347788899
Q ss_pred ceEEEc
Q 015946 292 RYVVLD 297 (397)
Q Consensus 292 ~~lVlD 297 (397)
++||..
T Consensus 427 ~~VI~~ 432 (508)
T 3fho_A 427 NLVVNY 432 (508)
T ss_dssp CEEEC-
T ss_pred CEEEEE
Confidence 998853
No 344
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.65 E-value=3 Score=39.62 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=31.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHH-HH-HHhCCCcEEEEcCCCCchHHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVG-IP-AVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~a-i~-~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
..+|+++.-.+.+++.|.+.=. .+....- +. .....+.+++.||+|+|||+..-
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 4578887766777766654310 0000000 00 01235689999999999997643
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.63 E-value=24 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYLLP 198 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~lp 198 (397)
.++++|++|+|||....--
T Consensus 103 vI~ivG~~GvGKTTl~~kL 121 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKL 121 (504)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999875443
No 346
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=64.36 E-value=1.4 Score=43.51 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++.-+..++..+... ++.+..++|+.....+...+ .+..+|||||. . -..++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~-~~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----c-cccCCccccC
Confidence 457999999999998888777654 66788889887765544333 34578999994 2 2346778888
Q ss_pred ceEE
Q 015946 292 RYVV 295 (397)
Q Consensus 292 ~~lV 295 (397)
++||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.90 E-value=2.5 Score=35.53 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999998643
No 348
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=63.40 E-value=1.8 Score=39.03 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999764
No 349
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.08 E-value=8.5 Score=36.68 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCch
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~Ptr 226 (397)
.|.-+++.|+.|+|||...+--+.. +.. .+..++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~-~~~---------~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA-AQR---------EGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-HHH---------TTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH---------CCCeEEEEeCCC
Confidence 4678999999999999765443333 332 244677776543
No 350
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=63.04 E-value=4 Score=38.46 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 351
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=62.70 E-value=3.2 Score=35.59 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.7
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|.-+.+.|++|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677999999999999764
No 352
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.39 E-value=4.1 Score=37.98 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+.++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 353
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.31 E-value=5.2 Score=38.31 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.1
Q ss_pred CCCc--EEEEcCCCCchHHHH
Q 015946 177 NGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~d--vlv~apTGsGKTl~~ 195 (397)
.|.+ ++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999875
No 354
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=62.27 E-value=3.6 Score=39.12 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5889999999999754
No 355
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.13 E-value=2.7 Score=35.55 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
.-+++.||+|+|||...-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578999999999986543
No 356
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.05 E-value=5.7 Score=35.85 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=18.1
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~ 196 (397)
+.|..+++.|++|+|||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358999999999999998753
No 357
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.04 E-value=2.7 Score=36.94 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=12.9
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777999999999999764
No 358
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=61.49 E-value=3.4 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4557889999999999753
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.26 E-value=4.2 Score=35.18 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 015946 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 165 ~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~~ 196 (397)
++.++.. ..+..|.-+++.|+.|||||...-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 4454444 334567789999999999997643
No 360
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=61.13 E-value=3.8 Score=35.06 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
+-++++|+.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=60.77 E-value=4 Score=33.53 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999863
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=60.27 E-value=3.8 Score=39.92 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-++|.||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3789999999999754
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.26 E-value=4.5 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35678999999999999864
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.24 E-value=4.3 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677999999999999864
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=60.17 E-value=3.7 Score=34.54 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 366
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=59.97 E-value=4 Score=34.18 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-.++.|++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999864
No 367
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=59.77 E-value=5.6 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+.+|+||+=.-+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 46778999999998888877777777776654
No 368
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=59.74 E-value=24 Score=38.23 Aligned_cols=91 Identities=10% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh---c-CC--ccEEEeChHHHHHHHhcCCCCC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---N-AP--IGMLIATPSEVLQHIEDRNVSC 288 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~--~~IlV~TP~~L~~~l~~~~~~l 288 (397)
.+.++||.|+++.-+..+...+.. ..++.+..++|+.+.......+ . +. ++|||+|. . -..++++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCc
Confidence 467899999999998887776663 2378899999998866554433 2 22 89999992 1 2457889
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.++.+||+-+.+ ++ ...+...+.+..
T Consensus 573 ~~~~~VI~~d~p----~~-~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 573 QFASHMVMFDLP----FN-PDLLEQRIGRLD 598 (968)
T ss_dssp TTCCEEECSSCC----SS-HHHHHHHHHTTS
T ss_pred ccCcEEEEecCC----CC-HHHHHHHhhccc
Confidence 999999986665 33 334444455443
No 369
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.72 E-value=3.8 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4456889999999999864
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=59.69 E-value=3.9 Score=39.10 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=19.5
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.+.+++++||--.-+|......+..++..+.
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~ 332 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELE 332 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3556778888776666555555556665553
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=59.37 E-value=4.7 Score=35.94 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877788888887775
No 372
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=59.34 E-value=3.8 Score=37.72 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
.-++++|++|||||...-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998643
No 373
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.01 E-value=11 Score=33.51 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=18.9
Q ss_pred CCC-cEEEEcCCCCchHHHHHHHHHHH
Q 015946 177 NGK-SVVLSSGSGSGRTLAYLLPLVQM 202 (397)
Q Consensus 177 ~g~-dvlv~apTGsGKTl~~~lpil~~ 202 (397)
.|+ ++++.++.|+|||.+.+--+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345 69999999999998755444333
No 374
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=58.63 E-value=6.8 Score=40.09 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHhCCCcEEEEcCCCCchHHHH
Q 015946 173 PAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 173 ~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+..|..+++.||+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34567899999999999999764
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=58.44 E-value=4.3 Score=33.96 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999864
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.83 E-value=4.8 Score=35.19 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 377
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.78 E-value=6.3 Score=33.42 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+.+.||+|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 378
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.38 E-value=6.6 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
..++|+.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998653
No 379
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.35 E-value=13 Score=33.79 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..|+++--.+.+++.+... +.. -...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 4566666566776666543 110 11235999999999999754
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=57.28 E-value=13 Score=31.26 Aligned_cols=15 Identities=20% Similarity=0.054 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchHHH
Q 015946 180 SVVLSSGSGSGRTLA 194 (397)
Q Consensus 180 dvlv~apTGsGKTl~ 194 (397)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 381
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.86 E-value=7.3 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
|.-+.+.|++|+|||..+-+
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 45688999999999986543
No 382
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.68 E-value=6.4 Score=36.86 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~l 197 (397)
..+++.||+|+|||...-+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999986433
No 383
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=56.60 E-value=5.6 Score=34.52 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=56.60 E-value=5.7 Score=33.53 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+.-++++|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999864
No 385
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=56.55 E-value=14 Score=39.89 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=43.3
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeee--------cCCCChHHHHHHh----c-CCccEEEeChHHHHHHH
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME--------NGGVSSKALEDVS----N-APIGMLIATPSEVLQHI 281 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~--------~g~~~~~~~~~~~----~-~~~~IlV~TP~~L~~~l 281 (397)
.+.++||.|+++..+..+...+.......++++..+ +|+.+...+...+ . +..+|||+|- +
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~------~ 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC------c
Confidence 467999999999999999998887533333444444 4445544433332 2 4578999993 2
Q ss_pred hcCCCCCCCcceEEEcCC
Q 015946 282 EDRNVSCDDIRYVVLDEA 299 (397)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (397)
...++++..+++||.=+.
T Consensus 704 ~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred hhcCCcchhCCEEEEeCC
Confidence 234678889999886544
No 386
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=56.54 E-value=5.6 Score=33.09 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
+.+++.|+.|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999998643
No 387
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=56.40 E-value=5.1 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+.-+++.|+.|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4468999999999998653
No 388
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.34 E-value=7.4 Score=33.77 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=25.8
Q ss_pred cceEEEcCCCccccCC-CHHHHHHHHHHhhhhhhccCCCCceEEEEecc
Q 015946 291 IRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (397)
Q Consensus 291 l~~lVlDEah~~l~~~-f~~~l~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (397)
-.+|||||||.++... ..-....++..+.. ......++|+++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~----~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNT----HRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGG----TTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHh----cCcCCeEEEEECCC
Confidence 4589999999885322 11111234444432 22346799999887
No 389
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=56.23 E-value=5 Score=41.12 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHH
Q 015946 180 SVVLSSGSGSGRTLA 194 (397)
Q Consensus 180 dvlv~apTGsGKTl~ 194 (397)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999975
No 390
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.18 E-value=6.8 Score=36.54 Aligned_cols=20 Identities=5% Similarity=0.214 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+.+.||+|+|||...-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 68889999999999997543
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=56.15 E-value=5.5 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~ 196 (397)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998653
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=56.07 E-value=5.4 Score=34.69 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+..+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999998643
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=56.04 E-value=6 Score=33.08 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
..+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
No 394
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=55.81 E-value=29 Score=29.09 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=11.3
Q ss_pred EcCCCCchHHHHHHHHH
Q 015946 184 SSGSGSGRTLAYLLPLV 200 (397)
Q Consensus 184 ~apTGsGKTl~~~lpil 200 (397)
.+..|+|||...+--+.
T Consensus 8 s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIAT 24 (206)
T ss_dssp CSSTTSSHHHHHHHHHH
T ss_pred eCCCCccHHHHHHHHHH
Confidence 35678999987554333
No 395
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=55.51 E-value=5.2 Score=33.44 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=55.40 E-value=5.2 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+++.|+.|||||...-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456799999999999986543
No 397
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=55.28 E-value=6 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|||||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999753
No 398
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=54.93 E-value=7.6 Score=40.64 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 015946 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (397)
Q Consensus 171 ai~~i~~g~d--vlv~apTGsGKTl~~ 195 (397)
.+..++.|.| ++..|+||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 6777889987 677899999999764
No 399
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.75 E-value=5.6 Score=34.28 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=54.64 E-value=5.8 Score=33.91 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999998643
No 401
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.57 E-value=5.3 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.2
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 015946 175 VLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 175 i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..|+.+|++||||+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 457899999999999999764
No 402
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.55 E-value=6.5 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+..+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346999999999999864
No 403
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=54.25 E-value=6.9 Score=33.89 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+..+.+.|++|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999998643
No 404
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=54.05 E-value=84 Score=28.19 Aligned_cols=96 Identities=7% Similarity=0.080 Sum_probs=61.9
Q ss_pred CCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh--
Q 015946 186 GSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-- 263 (397)
Q Consensus 186 pTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-- 263 (397)
...+||-.+ +.-++..+.. .+.++||.|.++..+..+...+... .++.+..++|+.+.......+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~---------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD---------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh---------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHH
Confidence 356788654 3444544433 3568999999999888877777552 266788899998866654433
Q ss_pred -c-C-Ccc-EEEeChHHHHHHHhcCCCCCCCcceEEEcCCC
Q 015946 264 -N-A-PIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (397)
Q Consensus 264 -~-~-~~~-IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah 300 (397)
. . .+. +|++|-- ...++++..+++||+=+..
T Consensus 159 F~~~~~~~v~L~st~~------~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVKA------GGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp HHHCTTCCEEEEECCT------TCCCCCCTTCSEEEECSCC
T ss_pred hcCCCCCCEEEEehhh------hcCCcCcccCCEEEEECCC
Confidence 2 2 345 5566531 2346788888888765444
No 405
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=53.91 E-value=6.2 Score=33.77 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46779999999999998653
No 406
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.83 E-value=6.2 Score=33.84 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 407
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.82 E-value=6.6 Score=32.31 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999864
No 408
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=53.71 E-value=5.9 Score=33.13 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999864
No 409
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.43 E-value=9 Score=36.63 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=18.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil 200 (397)
.+.++++.|+||+|||...-.-+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999976544333
No 410
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=53.33 E-value=5.8 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999864
No 411
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=53.26 E-value=7.1 Score=34.26 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 56778999999999999988888888888775
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=53.10 E-value=5.6 Score=37.93 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
=.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999874
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.08 E-value=6 Score=33.74 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999864
No 414
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=52.99 E-value=6.2 Score=34.02 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 415
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=52.91 E-value=6.9 Score=34.62 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|+|||..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6778999999999999753
No 416
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=52.91 E-value=32 Score=33.41 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHH
Q 015946 163 VPSEIQCVGIPAVL---NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 163 ~~~~iQ~~ai~~i~---~g~dvlv~apTGsGKTl~~~l 197 (397)
.+...-..+|..++ .|+.+.+.||+|+|||.....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 35556667777655 689999999999999987643
No 417
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.86 E-value=6.8 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
.+++++.||+|+|||+..
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999864
No 418
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.63 E-value=2.9 Score=39.47 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHh----cCCccEEEeChHHHHHHHhcCCCCCCCc
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 291 (397)
..++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .+...|+|+|. . -..++++.++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----h-hhcCCCcccC
Confidence 458999999999998887776653 66788888887665544333 23468999994 1 2236677888
Q ss_pred ceEEE
Q 015946 292 RYVVL 296 (397)
Q Consensus 292 ~~lVl 296 (397)
++||.
T Consensus 329 ~~Vi~ 333 (394)
T 1fuu_A 329 SLVIN 333 (394)
T ss_dssp -----
T ss_pred CEEEE
Confidence 87764
No 419
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.48 E-value=6.5 Score=33.62 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 420
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=52.43 E-value=8.5 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
|.-+.+.||+|+|||....
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 5678899999999998643
No 421
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=52.26 E-value=6.9 Score=34.67 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+.-+++.|+.|||||...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35679999999999997643
No 422
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=52.13 E-value=5.6 Score=33.11 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=12.0
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999998643
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=52.02 E-value=7 Score=35.79 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEeccCCCC
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEL 342 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (397)
+.+-++|++||--.-+|......+..++..+... .+.-+|+.|--+...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~------~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE------LGITIIIATHDIDIV 207 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH------HCCEEEEEESCCSSG
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh------CCCEEEEEecCHHHH
Confidence 4567899999998888877777777777776421 134566666555433
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=51.99 E-value=6.7 Score=33.41 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999864
No 425
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=51.96 E-value=6.2 Score=39.26 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-.+..++.+.+. .+..+..++... +.-.+.+++.||+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 45688887666666666542 011111111000 011356999999999999864
No 426
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=51.94 E-value=7.1 Score=34.40 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777777777764
No 427
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=51.57 E-value=6.8 Score=33.10 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999854
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=51.48 E-value=7.4 Score=35.07 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 35678999999998888877777877777764
No 429
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.29 E-value=6.2 Score=34.27 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
-.++.|+.|||||+...
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999998643
No 430
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=51.22 E-value=19 Score=32.65 Aligned_cols=53 Identities=4% Similarity=-0.037 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhccccCCCCCCCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.|..+++.+.+|+||| .+.+-.+..-.. ++-+++|++= .+-..++.+.+..++
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~---------~Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK---------SDNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH---------TTCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH---------CCCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 4567888877887887 555544444333 3557777664 333445555555553
No 431
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.10 E-value=9.5 Score=34.10 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+.+.||+|||||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45679999999999998643
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=51.10 E-value=7.7 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.+..+++.|+.|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 433
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=51.04 E-value=8.6 Score=34.77 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.+-+++++||.-.-+|......+..++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 3568999999998888777777777776663
No 434
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=51.01 E-value=82 Score=34.22 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhh-----------------------------------cCCcceeeecCCCChHHHH
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISH-----------------------------------CARLDSSMENGGVSSKALE 260 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~-----------------------------------~~~~~v~~~~g~~~~~~~~ 260 (397)
...+||.|+++.-+..+...+..++. .....+..++|+.....+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45799999999988887765533211 1122578899998876655
Q ss_pred HHh----cCCccEEEeChHHHHHHHhcCCCCCCCcceEEEcCCCc
Q 015946 261 DVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 261 ~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEah~ 301 (397)
..+ .+..+|||||-- +. .++++.. ..+|+.....
T Consensus 416 ~v~~~F~~G~~kVLvAT~~-----~a-~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATET-----FA-MGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHTTCCSEEEECTH-----HH-HSCCCCC-SEEEESCSEE
T ss_pred HHHHHHHCCCCcEEEEchH-----hh-CCCCCCC-ceEEEecccc
Confidence 432 356899999952 22 3677888 6666655543
No 435
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=50.79 E-value=65 Score=34.28 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=48.4
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhc--CCccEEEeChHHHHHHHhcCCCCCC----
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN--APIGMLIATPSEVLQHIEDRNVSCD---- 289 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~~~~IlV~TP~~L~~~l~~~~~~l~---- 289 (397)
+..+||.|.|++-+..+...+.. .|+.+.+++|+........... ....|+|+|- +. ..++++.
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~----~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd-----mA-gRG~DI~l~~~ 501 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN----KGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN-----MA-GRGTDIKLGEG 501 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET-----TS-STTCCCCCCTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----CCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC-----cc-ccCcCccccch
Confidence 44699999999999888776655 3788889999865444322221 1247999994 22 2344444
Q ss_pred ----CcceEEEcCCC
Q 015946 290 ----DIRYVVLDEAD 300 (397)
Q Consensus 290 ----~l~~lVlDEah 300 (397)
.+.+||-=|.|
T Consensus 502 V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 502 VKELGGLAVVGTERH 516 (844)
T ss_dssp SGGGTSEEEEESSCC
T ss_pred hhhcCCcEEEEecCC
Confidence 44566666666
No 436
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=50.77 E-value=7.1 Score=33.77 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999864
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=50.77 E-value=7.8 Score=34.53 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777877777764
No 438
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=50.70 E-value=7.7 Score=35.25 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=24.4
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+-++|++||-=.-+|......+..++..+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 678999999988887777777777777775
No 439
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.67 E-value=3.4 Score=43.99 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=33.9
Q ss_pred cccccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 015946 139 VVSSFQELGLKAEMIKAVEKMGL---FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~---~~~~~iQ~~ai~~i~~g~dvlv~apTGsGKTl~~ 195 (397)
+..+|++++.-+.+.+.|.+.=. .+|.-++.. .+...+.+|+.||.|+|||+..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 34579999888888888876521 111111100 0112357999999999999754
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=50.65 E-value=8.8 Score=34.39 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 45678999999998888777777777777663
No 441
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=50.62 E-value=21 Score=39.10 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=50.5
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCcceeeecCCCChHHHHHHhcCCccEEEeChHHHHHHHhcCCCCCCCc-ceE
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI-RYV 294 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~IlV~TP~~L~~~l~~~~~~l~~l-~~l 294 (397)
+.++||.|+|+.-+..++..+... +.+..++|+.... ......+..+|||||... .+.+ ..++++.++ ++|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~~-l~~F~~G~~~VLVaTas~-Tdv~-~rGIDip~VI~~V 346 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGD-YEKFVEGEIDHLIGTAHY-YGTL-VRGLDLPERIRFA 346 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHH-HHHHHHTSCSEEEEECC--------CCSCCTTTCCEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHHH-HHHHHcCCCcEEEEecCC-CCee-EeccccCCcccEE
Confidence 567999999999988877665443 7888999987422 222334568999993100 0222 237889995 988
Q ss_pred EEcCCC
Q 015946 295 VLDEAD 300 (397)
Q Consensus 295 VlDEah 300 (397)
|.=.+-
T Consensus 347 I~~~~P 352 (1054)
T 1gku_B 347 VFVGCP 352 (1054)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 876665
No 442
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=50.58 E-value=7.6 Score=31.77 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999864
No 443
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=50.49 E-value=8.3 Score=35.76 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~l 197 (397)
.|.-+.+.||+|+|||.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 455688999999999986543
No 444
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=50.23 E-value=7.9 Score=35.04 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35678999999998888777777777777764
No 445
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=50.20 E-value=7.1 Score=32.67 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999864
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=49.80 E-value=7.8 Score=33.60 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999864
No 447
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=49.34 E-value=7.5 Score=34.94 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~ 196 (397)
+.-++++|+.|||||...-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3468999999999998643
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=49.17 E-value=7.1 Score=36.38 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 289 ~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
.+-++||+||.=.-+|......+..++..+.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 3568999999998887766667776666654
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=49.11 E-value=17 Score=34.57 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAYLL 197 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~~l 197 (397)
|.-+.+.|++|+|||.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 44588999999999986543
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.06 E-value=15 Score=36.67 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=22.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHHHh
Q 015946 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~~lpil~~l~~ 205 (397)
..|.-+++.||+|+|||.....-++.-+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 357889999999999998765544444443
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=49.03 E-value=8.5 Score=34.95 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.6
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+-+++++||--.-+|......+..++..+.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 567999999998888777777777777663
No 452
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=49.01 E-value=5.8 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
-+.++|++|||||....
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997643
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=48.95 E-value=8.6 Score=34.58 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 293 YVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 293 ~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
++++||--.-+|......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999998888877778888877764
No 454
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=48.94 E-value=7.6 Score=32.65 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred EEEEcCCCCchHHHHH
Q 015946 181 VVLSSGSGSGRTLAYL 196 (397)
Q Consensus 181 vlv~apTGsGKTl~~~ 196 (397)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998653
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=48.80 E-value=8.7 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877888888887764
No 456
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.71 E-value=8.2 Score=34.42 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.4
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+-+++++||.-.-+|......+..++..+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 457999999999888887777777777664
No 457
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.56 E-value=16 Score=35.79 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 015946 179 KSVVLSSGSGSGRTLAYLLPL 199 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~~lpi 199 (397)
+.++++|++|+|||....--+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999997654433
No 458
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=48.55 E-value=8 Score=32.14 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.3
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 015946 176 LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 176 ~~g~dvlv~apTGsGKTl~~ 195 (397)
..|.-+.+.||.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999753
No 459
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.52 E-value=8.8 Score=34.67 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777877777764
No 460
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=48.37 E-value=7.9 Score=40.73 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
..++|+.||+|+|||.+.
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999864
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=48.31 E-value=8.7 Score=34.58 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35678999999998888877888888887765
No 462
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.90 E-value=7.6 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 015946 178 GKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 178 g~dvlv~apTGsGKTl~~ 195 (397)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999764
No 463
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=47.75 E-value=5.6 Score=35.58 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
..++++|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 464
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=47.42 E-value=9.3 Score=34.66 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=25.9
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||--.-+|......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777877777764
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=47.35 E-value=11 Score=33.85 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=24.0
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+-+++++||--.-+|......+..++..+.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 467999999998888777777777777664
No 466
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.24 E-value=7.3 Score=41.32 Aligned_cols=81 Identities=14% Similarity=0.309 Sum_probs=49.1
Q ss_pred CCCceEEEcCchhHHH-----HHHHHHHHhhh-c-CCcceeeecCCCChHHHHHH----hcCCccEEEeChHHHHHHHhc
Q 015946 215 MHPRAIVLCTTEESAD-----QGFHMAKFISH-C-ARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIED 283 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~-----Qv~~~~~~~~~-~-~~~~v~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~L~~~l~~ 283 (397)
.+.+++|+||+.+-.. .+......+.. . .++.+..++|+......... ..+..+|||+|. +-.
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~------vie 650 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VIE 650 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CCC
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC------CCC
Confidence 4568899999765321 11222233333 2 36788999998765443332 234589999994 234
Q ss_pred CCCCCCCcceEEEcCCCc
Q 015946 284 RNVSCDDIRYVVLDEADT 301 (397)
Q Consensus 284 ~~~~l~~l~~lVlDEah~ 301 (397)
.++++.+++++|+..++.
T Consensus 651 ~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPER 668 (780)
T ss_dssp SCSCCTTCCEEEBCSCSS
T ss_pred ccccCCCCCEEEEeCCCC
Confidence 578899999999988875
No 467
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.20 E-value=9.4 Score=34.96 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=24.8
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-+++++||-=.-+|......+..++..+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 35678999999988888777777777777664
No 468
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.88 E-value=11 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhh
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~ 319 (397)
+.+-++|++||--.-+|......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888777777777777664
No 469
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.81 E-value=8.3 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.9
Q ss_pred HHhCCCcEEEEcCCCCchHHH
Q 015946 174 AVLNGKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 174 ~i~~g~dvlv~apTGsGKTl~ 194 (397)
.+..|+.++++||||+|||..
T Consensus 1300 ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHH
T ss_pred HHHCCCcEEEECCCCCCHHHH
Confidence 345788999999999999954
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.80 E-value=7.7 Score=41.25 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.++.++++||+|+|||+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999754
No 471
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.66 E-value=9.9 Score=32.09 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999864
No 472
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=46.50 E-value=8.8 Score=33.11 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 473
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=46.48 E-value=9 Score=33.05 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 015946 179 KSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 179 ~dvlv~apTGsGKTl~~ 195 (397)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 474
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=46.42 E-value=17 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+++.|+.|+|||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3789999999999864
No 475
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=46.33 E-value=8.7 Score=36.09 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 288 l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
..+-+++++||.-.-+|......+..++..+.. ...++|+.|-
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-------~~~~vi~~sH 312 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLK-------KIPQVILVSH 312 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-------GSSEEEEEES
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-------cCCEEEEEEC
Confidence 345688999999888877766677777766542 2346666553
No 476
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=45.97 E-value=72 Score=31.93 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=56.8
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhhhc----CCcceeeecCCCCh--HHHHHHhcC-C---ccEEEeChHHHHHHHhcC
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFISHC----ARLDSSMENGGVSS--KALEDVSNA-P---IGMLIATPSEVLQHIEDR 284 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~~~----~~~~v~~~~g~~~~--~~~~~~~~~-~---~~IlV~TP~~L~~~l~~~ 284 (397)
.+.++||.|+++.-+..++..+...... .+-.+..++|+... ........+ . +-|+|+|- + -..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~-l~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----L-LTT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----T-TTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----h-hhc
Confidence 4578999999999999999988765432 12235566776543 111122222 2 23777772 1 224
Q ss_pred CCCCCCcceEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015946 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (397)
Q Consensus 285 ~~~l~~l~~lVlDEah~~l~~~f~~~l~~il~~l~~ 320 (397)
++++.++++||++..- ++ ...+...+.+..+
T Consensus 512 GiDip~v~~Vi~~~~~----~s-~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV----NS-MSEFKQIVGRGTR 542 (590)
T ss_dssp TCCCTTEEEEEEESCC----CC-HHHHHHHHTTSCC
T ss_pred CccchheeEEEEEecC----CC-hHHHHHHHhhhcc
Confidence 6889999999987553 22 3344444444443
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=45.93 E-value=11 Score=32.21 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|+-+++.|++|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 5678999999999999654
No 478
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=45.48 E-value=8.2 Score=34.22 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.|.-+.+.||.|||||...-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45568899999999998653
No 479
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=45.46 E-value=49 Score=36.47 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=48.9
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcC-----------------------------------CcceeeecCCCChHHHH
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCA-----------------------------------RLDSSMENGGVSSKALE 260 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~-----------------------------------~~~v~~~~g~~~~~~~~ 260 (397)
...+||.|+++.-+..+...+..++... ...+..++|+.....+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 5589999999999988877664322111 11278899998876655
Q ss_pred HHh----cCCccEEEeChHHHHHHHhcCCCCCCCcceEE
Q 015946 261 DVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (397)
Q Consensus 261 ~~~----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 295 (397)
..+ .+...|||||. +-..++++..+.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~------vla~GIDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATE------TFSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEES------CCCSCCCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECc------HHhcCCCCCCceEEE
Confidence 433 35689999994 223467788888855
No 480
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=45.45 E-value=16 Score=30.88 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred CcceEEEcCCCccccCCCHHHHHHHHHHhhhhhhccCCCCceEEEEec
Q 015946 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (397)
Q Consensus 290 ~l~~lVlDEah~~l~~~f~~~l~~il~~l~~~~~~~~~~~~q~i~~SA 337 (397)
.-.++++||.+.-+|......+..++..+. ...|+|++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~--------~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS--------KESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT--------TTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc--------cCCEEEEEEe
Confidence 357999999999888766666666666553 3568888763
No 481
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=45.25 E-value=24 Score=38.87 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=53.1
Q ss_pred CCceEEEcCchhHHHHHHHHHHHhhhcCCccee-eecCCCChHHHHHHhcCCccEEEe----ChHHHHHHHhcCCCCCCC
Q 015946 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIA----TPSEVLQHIEDRNVSCDD 290 (397)
Q Consensus 216 ~~~~lvl~PtreLa~Qv~~~~~~~~~~~~~~v~-~~~g~~~~~~~~~~~~~~~~IlV~----TP~~L~~~l~~~~~~l~~ 290 (397)
+.++||.|+++.-+..++..+... ++.+. .++|. .........+..+|||| |- . -..++++.+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~l~~F~~G~~~VLVatas~Td-----v-larGIDip~ 376 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAYYG-----K-LTRGVDLPE 376 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHHHHHHHHTSCSEEEEETTTHH-----H-HCCSCCCTT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHHHHHHHCCCCCEEEEecCCCC-----e-eEecCcCCC
Confidence 468999999999999988887764 67777 77773 11222233456899999 52 2 345788999
Q ss_pred -cceEEEcCCCc
Q 015946 291 -IRYVVLDEADT 301 (397)
Q Consensus 291 -l~~lVlDEah~ 301 (397)
+++||.=++-.
T Consensus 377 ~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 377 RIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEEEESCCE
T ss_pred CCCEEEEECCCC
Confidence 99988766665
No 482
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.09 E-value=9.7 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 483
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.00 E-value=9.1 Score=38.28 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHH--hCCCcEEEEcCCCCchHHHH
Q 015946 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAV--LNGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~~~~iQ~~ai~~i--~~g~dvlv~apTGsGKTl~~ 195 (397)
..+|+++.-.+..+..+.+.- +..+. .+..+ .-.+.+++.||+|+|||+..
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 456888876666666665421 10100 00000 01245999999999999864
No 484
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=44.46 E-value=9.4 Score=33.89 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+..+++.|+.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34579999999999998643
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=44.43 E-value=11 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|+|||..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5778999999999999864
No 486
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=44.25 E-value=1.2e+02 Score=33.13 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=22.8
Q ss_pred CCCceEEEcCchhHHHHHHHHHHHhh
Q 015946 215 MHPRAIVLCTTEESADQGFHMAKFIS 240 (397)
Q Consensus 215 ~~~~~lvl~PtreLa~Qv~~~~~~~~ 240 (397)
.+.++||+|.++.-|...+..+..+.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 35689999999999999999998876
No 487
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=43.72 E-value=9.5 Score=32.33 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|..+++.|++|+|||..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999753
No 488
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=43.65 E-value=10 Score=33.29 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCCchHHH
Q 015946 177 NGKSVVLSSGSGSGRTLA 194 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~ 194 (397)
.|.-+.+.|+.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 355689999999999984
No 489
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=43.55 E-value=12 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+.|+|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 490
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.49 E-value=77 Score=29.82 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=13.3
Q ss_pred EEEE-cCCCCchHHHHHHHHHH
Q 015946 181 VVLS-SGSGSGRTLAYLLPLVQ 201 (397)
Q Consensus 181 vlv~-apTGsGKTl~~~lpil~ 201 (397)
+.+. +.-|.|||...+--+..
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 4444 46789999876544433
No 491
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=43.41 E-value=9.8 Score=35.44 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|.-+.+.||+|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3456889999999999764
No 492
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.32 E-value=16 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
++++.||+|+|||...-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997653
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=43.27 E-value=11 Score=32.48 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 015946 180 SVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 180 dvlv~apTGsGKTl~~~ 196 (397)
.+.+.|+.|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 494
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.17 E-value=11 Score=39.62 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAYL 196 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~~ 196 (397)
.+.++++.|++|+|||...-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35689999999999998643
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=43.16 E-value=15 Score=33.70 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 015946 177 NGKSVVLSSGSGSGRTLAY 195 (397)
Q Consensus 177 ~g~dvlv~apTGsGKTl~~ 195 (397)
.|+.++|.|+.|+|||...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HCSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEECCCcCCHHHHH
Confidence 3678999999999999753
No 496
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=42.69 E-value=10 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
++.+.||+|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 497
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=42.64 E-value=11 Score=34.34 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhhhccCCCCceEEEEeccCCC
Q 015946 308 GPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (397)
Q Consensus 308 ~~~l~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (397)
.+.+..++..|.. .+.++.++|+.-..
T Consensus 190 ~~g~~e~L~~L~~-------~g~~~~v~T~k~~~ 216 (301)
T 1ltq_A 190 NPMVVELSKMYAL-------MGYQIVVVSGRESG 216 (301)
T ss_dssp CHHHHHHHHHHHH-------TTCEEEEEECSCCC
T ss_pred ChHHHHHHHHHHH-------CCCeEEEEeCCCcc
Confidence 4678888888864 46889999887644
No 498
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=42.55 E-value=19 Score=33.75 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 015946 180 SVVLSSGSGSGRTLAY 195 (397)
Q Consensus 180 dvlv~apTGsGKTl~~ 195 (397)
-+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999764
No 499
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=42.38 E-value=6 Score=33.87 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=13.1
Q ss_pred EEEEcCCCCchHHHH
Q 015946 181 VVLSSGSGSGRTLAY 195 (397)
Q Consensus 181 vlv~apTGsGKTl~~ 195 (397)
+++.|+.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 689999999999754
No 500
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=42.13 E-value=12 Score=31.64 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchHHH
Q 015946 180 SVVLSSGSGSGRTLA 194 (397)
Q Consensus 180 dvlv~apTGsGKTl~ 194 (397)
-+++.|++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999975
Done!