Query 015947
Match_columns 397
No_of_seqs 183 out of 567
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.3 2.6E-07 8.8E-12 75.0 3.6 84 2-91 3-100 (101)
2 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.021 7.1E-07 45.8 1.7 43 46-88 4-49 (101)
3 2yvr_A Transcription intermedi 91.9 0.071 2.4E-06 37.8 2.0 44 42-91 3-46 (50)
4 2ffw_A Midline-1; B-BOX, ring 91.0 0.086 3E-06 41.5 1.8 44 45-88 30-76 (78)
5 2d8u_A Ubiquitin ligase TRIM63 90.9 0.11 3.6E-06 38.5 2.1 45 41-91 4-49 (64)
6 3ddt_A E3 ubiquitin-protein li 88.1 0.23 7.9E-06 35.0 2.0 41 45-91 6-47 (48)
7 2did_A Tripartite motif protei 87.6 0.28 9.6E-06 35.1 2.3 40 45-91 8-48 (53)
8 1fre_A Nuclear factor XNF7; zi 86.2 0.52 1.8E-05 32.0 2.9 30 47-77 5-35 (42)
9 2dja_A Midline-2; tripartite m 84.0 0.5 1.7E-05 36.7 2.3 44 42-91 15-59 (84)
10 3ogl_Q JAZ1 incomplete degron 82.6 0.64 2.2E-05 28.8 1.8 18 358-375 3-20 (21)
11 2yrg_A Tripartite motif-contai 80.9 0.79 2.7E-05 33.8 2.2 41 44-91 13-54 (59)
12 2ffw_A Midline-1; B-BOX, ring 78.9 0.65 2.2E-05 36.4 1.2 43 2-44 30-75 (78)
13 2csv_A Tripartite motif protei 74.4 1.1 3.9E-05 33.9 1.5 40 45-91 18-57 (72)
14 2d8v_A Zinc finger FYVE domain 71.0 2.1 7.3E-05 33.4 2.2 46 43-90 6-52 (67)
15 2egm_A Tripartite motif-contai 67.7 1.1 3.9E-05 32.8 0.1 32 45-77 18-50 (57)
16 2fc7_A ZZZ3 protein; structure 62.4 11 0.00037 29.9 4.9 50 41-91 18-74 (82)
17 3ogk_Q JAZ1 incomplete degron 56.2 4.1 0.00014 25.4 1.1 19 361-379 1-19 (22)
18 2e5r_A Dystrobrevin alpha; ZZ 51.0 11 0.00037 28.5 3.0 34 41-76 9-46 (63)
19 4hc9_A Trans-acting T-cell-spe 47.1 4.2 0.00014 34.4 0.1 74 1-74 4-89 (115)
20 2did_A Tripartite motif protei 43.5 12 0.0004 26.4 2.0 31 3-34 9-40 (53)
21 2lri_C Autoimmune regulator; Z 43.1 14 0.00048 28.1 2.5 44 3-54 13-59 (66)
22 1fre_A Nuclear factor XNF7; zi 41.9 12 0.0004 25.1 1.7 31 3-34 4-35 (42)
23 2dja_A Midline-2; tripartite m 32.0 33 0.0011 26.1 3.1 44 3-52 19-63 (84)
24 2d8u_A Ubiquitin ligase TRIM63 31.5 26 0.0009 25.3 2.3 44 3-52 9-53 (64)
25 2yqq_A Zinc finger HIT domain- 31.0 26 0.0009 26.2 2.2 27 44-71 11-38 (56)
26 1z60_A TFIIH basal transcripti 30.4 14 0.00047 28.0 0.6 31 47-77 17-50 (59)
27 2k0a_A PRE-mRNA-splicing facto 30.3 10 0.00036 32.0 -0.1 51 22-72 22-79 (109)
28 2yvr_A Transcription intermedi 29.9 25 0.00086 24.3 1.9 32 3-34 7-38 (50)
29 2yrg_A Tripartite motif-contai 29.9 24 0.00083 25.7 1.9 31 3-34 15-46 (59)
30 1mm2_A MI2-beta; PHD, zinc fin 28.6 53 0.0018 24.1 3.6 25 3-35 10-34 (61)
31 2rp5_A Putative uncharacterize 26.7 5.6 0.00019 34.4 -2.3 30 218-258 88-117 (136)
32 1f62_A Transcription factor WS 26.2 46 0.0016 23.2 2.8 44 4-52 2-48 (51)
33 2egm_A Tripartite motif-contai 26.1 29 0.00099 25.1 1.7 30 3-33 19-49 (57)
34 2v1o_A Cytosolic acyl coenzyme 23.4 43 0.0015 27.4 2.5 22 358-379 130-151 (151)
35 1z60_A TFIIH basal transcripti 22.0 16 0.00054 27.6 -0.4 32 4-35 17-51 (59)
36 2yql_A PHD finger protein 21A; 21.0 35 0.0012 24.6 1.3 25 3-35 10-34 (56)
37 1v6g_A Actin binding LIM prote 20.6 44 0.0015 24.9 1.8 61 14-75 3-73 (81)
38 2jrp_A Putative cytoplasmic pr 20.2 55 0.0019 26.2 2.4 59 1-75 1-61 (81)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.33 E-value=2.6e-07 Score=74.98 Aligned_cols=84 Identities=18% Similarity=0.445 Sum_probs=67.2
Q ss_pred CCCCCccCC---CCeeEEecCCccccccccccccccccchhhccccc-c---------cccccCCCCceeeecCCCcccC
Q 015947 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC 68 (397)
Q Consensus 2 ~~~Cd~C~~---a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~Rv-p---------LCd~C~s~PA~v~C~~D~asLC 68 (397)
+..|++|.. .+|+.+|..+.+.||..|...+|..+...++|..+ + .|+.+...+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 467999984 68999999999999999999999877766788765 2 3666655668899999999999
Q ss_pred ccccc-CccCCCCCCCCCcccccc
Q 015947 69 QNCDW-IGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 69 ~~CD~-~~H~An~lA~~HqR~pl~ 91 (397)
..|.. ..|. .|..++|.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99986 4554 46655553
No 2
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.86 E-value=0.021 Score=45.81 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=36.5
Q ss_pred ccccccCC---CCceeeecCCCcccCcccccCccCCCCCCCCCccc
Q 015947 46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (397)
Q Consensus 46 pLCd~C~s---~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~ 88 (397)
..|++|.. .+|+.+|..|..+||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 57999999999999999998878766666788876
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=91.87 E-value=0.071 Score=37.84 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=34.8
Q ss_pred ccccccccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCcccccc
Q 015947 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 42 H~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl~ 91 (397)
..|...|..+...+-.+||..|...+|..|....|. .|..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 456677888877788999999999999999875553 67766664
No 4
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=91.00 E-value=0.086 Score=41.46 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=36.2
Q ss_pred cccccccCC---CCceeeecCCCcccCcccccCccCCCCCCCCCccc
Q 015947 45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (397)
Q Consensus 45 vpLCd~C~s---~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~ 88 (397)
...|+.|.. .+|+.+|..|.+++|..|-...|.......+|+.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 467999975 56899999999999999987768766667788764
No 5
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.90 E-value=0.11 Score=38.53 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=34.5
Q ss_pred cccccccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947 41 RHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (397)
Q Consensus 41 RH~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~ 91 (397)
+..+..+|..+...+..+||..|...+|..|... .|. .|..+||.
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 49 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence 4556677888877888999999999999999864 453 46655554
No 6
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=88.05 E-value=0.23 Score=34.96 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=30.7
Q ss_pred cccccccCCCCceeeecCCCcccCccccc-CccCCCCCCCCCcccccc
Q 015947 45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~-~~H~An~lA~~HqR~pl~ 91 (397)
..+|......+..+||..|...+|..|.. ..|. .|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 45677776677889999999999999974 3454 56666654
No 7
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.63 E-value=0.28 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=31.2
Q ss_pred cccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (397)
Q Consensus 45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~ 91 (397)
..+|..+. .+-.+||..|...+|..|... .|. .|..+||.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 34687776 678899999999999999873 443 67777765
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=86.23 E-value=0.52 Score=32.04 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=23.7
Q ss_pred cccccCCCCceeeecCCCcccCcccccC-ccC
Q 015947 47 LCERCNSQPALVRCAEERVSLCQNCDWI-GHG 77 (397)
Q Consensus 47 LCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~ 77 (397)
+|..++ .+-.+||..|...+|..|... .|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 566665 567899999999999999873 443
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=84.00 E-value=0.5 Score=36.65 Aligned_cols=44 Identities=20% Similarity=0.473 Sum_probs=32.3
Q ss_pred ccccccccccCCCCceeeecCCCcccCccccc-CccCCCCCCCCCcccccc
Q 015947 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 42 H~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~-~~H~An~lA~~HqR~pl~ 91 (397)
..+..+|..+...+-.+||..|...+|..|.. ..|. .|..+||.
T Consensus 15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 59 (84)
T 2dja_A 15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN 59 (84)
T ss_dssp CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence 34445677776677899999999999999987 3453 56555544
No 10
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=82.56 E-value=0.64 Score=28.79 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.4
Q ss_pred hhhHHHHHHHhHHhhhhc
Q 015947 358 SASRSKAVLRYKEKKKTR 375 (397)
Q Consensus 358 ~~~r~~a~~ry~ekkk~r 375 (397)
+.+|...+.||-||+|.|
T Consensus 3 p~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDR 20 (26)
T ss_pred chhHHHHHHHHHHHhhcc
Confidence 478999999999999987
No 11
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.89 E-value=0.79 Score=33.84 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=30.9
Q ss_pred ccccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (397)
Q Consensus 44 RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~ 91 (397)
+..+|..+. .+-.+||..|...+|..|... .|. .|...||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence 345677776 568899999999999999873 343 67766665
No 12
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=78.94 E-value=0.65 Score=36.37 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.2
Q ss_pred CCCCCccCC---CCeeEEecCCccccccccccccccccchhhcccc
Q 015947 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44 (397)
Q Consensus 2 ~~~Cd~C~~---a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~R 44 (397)
+..|++|.. .+|+..|....+.||..|=...|...+..++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999986 6799999999999999998877876665667753
No 13
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=74.39 E-value=1.1 Score=33.86 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=30.1
Q ss_pred cccccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCcccccc
Q 015947 45 TLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl~ 91 (397)
..+|..+. .+-.+||..|...+|..|....|. .|..+||.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 34677774 778899999999999999874453 56655543
No 14
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.03 E-value=2.1 Score=33.43 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=37.8
Q ss_pred cccccccccCCCCceeeecCC-CcccCcccccCccCCCCCCCCCccccc
Q 015947 43 SRTLLCERCNSQPALVRCAEE-RVSLCQNCDWIGHGTSTSASSHKRQTI 90 (397)
Q Consensus 43 ~RvpLCd~C~s~PA~v~C~~D-~asLC~~CD~~~H~An~lA~~HqR~pl 90 (397)
...+.|-+|... |+++|..| .-..|..|-+..|.. ..-..|+.++.
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 456789999977 99999998 779999999999953 45667887764
No 15
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.69 E-value=1.1 Score=32.80 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=25.3
Q ss_pred cccccccCCCCceeeecCCCcccCcccccC-ccC
Q 015947 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHG 77 (397)
Q Consensus 45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~ 77 (397)
..+|..+. .+-.+||..|...+|..|... .|.
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 34577774 678899999999999999863 454
No 16
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=62.38 E-value=11 Score=29.95 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=32.4
Q ss_pred cccccccccccCCCCce---eeecCCCc----ccCcccccCccCCCCCCCCCcccccc
Q 015947 41 RHSRTLLCERCNSQPAL---VRCAEERV----SLCQNCDWIGHGTSTSASSHKRQTIN 91 (397)
Q Consensus 41 RH~RvpLCd~C~s~PA~---v~C~~D~a----sLC~~CD~~~H~An~lA~~HqR~pl~ 91 (397)
.|..+ .|+.|...|-. +.|..|.- -||+.|-..++.+..-...|.-++|.
T Consensus 18 ~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 18 QHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp EESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred eeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 44433 79999988754 77999864 79999987764333222345544433
No 17
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=56.18 E-value=4.1 Score=25.44 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=14.8
Q ss_pred HHHHHHHhHHhhhhccccc
Q 015947 361 RSKAVLRYKEKKKTRKLVL 379 (397)
Q Consensus 361 r~~a~~ry~ekkk~r~~~k 379 (397)
|...+.||-||+|.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 4567899999999986543
No 18
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.04 E-value=11 Score=28.47 Aligned_cols=34 Identities=38% Similarity=0.894 Sum_probs=26.3
Q ss_pred cccccccccccCCCCc---eeeecCCC-cccCcccccCcc
Q 015947 41 RHSRTLLCERCNSQPA---LVRCAEER-VSLCQNCDWIGH 76 (397)
Q Consensus 41 RH~RvpLCd~C~s~PA---~v~C~~D~-asLC~~CD~~~H 76 (397)
.|. ..|+.|...|- -+.|..|. --||+.|-..+.
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 455 67999998874 37799884 469999987764
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=47.13 E-value=4.2 Score=34.37 Aligned_cols=74 Identities=22% Similarity=0.492 Sum_probs=49.0
Q ss_pred CCCCCCccCCCCeeEEecCCcc-ccccccc--cccccccchh-hcccc-------cccccccCCCCceee-ecCCCcccC
Q 015947 1 MGYMCDFCGDQRSIVYCRSDAA-CLCLSCD--RNVHLANALS-KRHSR-------TLLCERCNSQPALVR-CAEERVSLC 68 (397)
Q Consensus 1 M~~~Cd~C~~a~A~VyC~aD~A-~LC~~CD--~~vHsAN~La-~RH~R-------vpLCd~C~s~PA~v~-C~~D~asLC 68 (397)
+++.|..|+.....+|-+.+.. .||..|. .+.|..|.-. ....| ...|..|+.....+| =..+...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 4678999998877777776654 6999999 4445544421 11111 346999998876554 444556899
Q ss_pred cccccC
Q 015947 69 QNCDWI 74 (397)
Q Consensus 69 ~~CD~~ 74 (397)
..|-.-
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999854
No 20
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=43.49 E-value=12 Score=26.42 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=24.4
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vHs 34 (397)
.+|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 40 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR 40 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC
Confidence 4566665 56889999999999999986 5553
No 21
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=43.09 E-value=14 Score=28.07 Aligned_cols=44 Identities=27% Similarity=0.602 Sum_probs=28.0
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc---cchhhcccccccccccCCC
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA---NALSKRHSRTLLCERCNSQ 54 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsA---N~La~RH~RvpLCd~C~s~ 54 (397)
..|.+|+.. +...+|..|++..|.. ..|...-...+.|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 468888753 4566788899888874 2344444445667766543
No 22
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=41.91 E-value=12 Score=25.10 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=23.9
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vHs 34 (397)
.+|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4566665 46789999999999999986 4554
No 23
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=31.96 E-value=33 Score=26.12 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccccchhhcccccccccccC
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCN 52 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vHsAN~La~RH~RvpLCd~C~ 52 (397)
..|..=+..+-.+||..|...+|..|-. .-|. .|..+++-+.-.
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 3566654456889999999999999986 5553 466666655444
No 24
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=31.54 E-value=26 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccccccchhhcccccccccccC
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCN 52 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vHsAN~La~RH~RvpLCd~C~ 52 (397)
..|..=...+-.+||..|...+|..|-. .-|. .|..++|-+...
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~ 53 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ 53 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence 4566664556789999999999999975 4664 466666655444
No 25
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.99 E-value=26 Score=26.22 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=22.8
Q ss_pred ccccccccCCCCceeeecCCCcccCc-cc
Q 015947 44 RTLLCERCNSQPALVRCAEERVSLCQ-NC 71 (397)
Q Consensus 44 RvpLCd~C~s~PA~v~C~~D~asLC~-~C 71 (397)
+..+|.+|+. ++.+.|..|.+..|. .|
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESSHHH
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeCHHH
Confidence 3447999999 999999999999997 44
No 26
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=30.37 E-value=14 Score=27.98 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=23.7
Q ss_pred cccccCCCC---ceeeecCCCcccCcccccCccC
Q 015947 47 LCERCNSQP---ALVRCAEERVSLCQNCDWIGHG 77 (397)
Q Consensus 47 LCd~C~s~P---A~v~C~~D~asLC~~CD~~~H~ 77 (397)
.|-.|...- ..+.|..|+..+|..||.-+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 355555432 2467999999999999999986
No 27
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.33 E-value=10 Score=32.00 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=28.8
Q ss_pred cccccccccccccccchhhcccccccccccCCCCceeeecCCC-------cccCcccc
Q 015947 22 ACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER-------VSLCQNCD 72 (397)
Q Consensus 22 A~LC~~CD~~vHsAN~La~RH~RvpLCd~C~s~PA~v~C~~D~-------asLC~~CD 72 (397)
+.||..||.+--.-...++-...+.+|+.|....-.-+|..|. |..|..|-
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4566666654443333333445567888776555444555444 56677775
No 28
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=29.92 E-value=25 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=24.7
Q ss_pred CCCCccCCCCeeEEecCCcccccccccccccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHs 34 (397)
..|..=...+-.+||..|...+|..|-..-|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 45666645567899999999999999765553
No 29
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.89 E-value=24 Score=25.65 Aligned_cols=31 Identities=26% Similarity=0.776 Sum_probs=23.8
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-cccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vHs 34 (397)
.+|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~ 46 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR 46 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC
Confidence 4566655 36789999999999999986 4553
No 30
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=28.59 E-value=53 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=18.0
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsA 35 (397)
..|..|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 467778753 4567788899888874
No 31
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=26.73 E-value=5.6 Score=34.35 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=24.2
Q ss_pred CCCCCcccccccchhhhhcccchhhHhhhhcCCCccccCCC
Q 015947 218 DFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTK 258 (397)
Q Consensus 218 dfnmDDvdL~fENyEElFG~s~~~s~~lfed~Gids~f~~K 258 (397)
=|+|-|++--||-|+||| |-+||||.=+.|
T Consensus 88 i~TM~Dl~k~Fe~~~~iF-----------E~IGiDssKleK 117 (136)
T 2rp5_A 88 IYTMGDMIREFEKHNDIF-----------ERIGIDSSKLSK 117 (136)
T ss_dssp CCSTTHHHHHHHHTSCHH-----------HHHTCCGGGHHH
T ss_pred ceeHHHHHHHHHHHHHHH-----------HHhcccHHHHHH
Confidence 489999999999999885 567888865444
No 32
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.15 E-value=46 Score=23.21 Aligned_cols=44 Identities=27% Similarity=0.629 Sum_probs=25.7
Q ss_pred CCCccCCCCeeEEecCCccccccccccccccc--c-chhhcccccccccccC
Q 015947 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCN 52 (397)
Q Consensus 4 ~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsA--N-~La~RH~RvpLCd~C~ 52 (397)
.|.+|+... ..+.-.+|..|++..|.. + +|.......+.|..|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 588888753 234566788999888864 1 2333333344555554
No 33
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.06 E-value=29 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=23.3
Q ss_pred CCCCccCCCCeeEEecCCcccccccccc-ccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVH 33 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~-~vH 33 (397)
.+|..=+ .+-.+||..|.+.+|..|.. .-|
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 4566664 46889999999999999985 344
No 34
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication, ACOT7, macrophage; HET: COA; 1.78A {Mus musculus}
Probab=23.38 E-value=43 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.4
Q ss_pred hhhHHHHHHHhHHhhhhccccc
Q 015947 358 SASRSKAVLRYKEKKKTRKLVL 379 (397)
Q Consensus 358 ~~~r~~a~~ry~ekkk~r~~~k 379 (397)
.++++.+..||+.+|++|+..|
T Consensus 130 ~~e~~~~~~r~~~~~~~~~~~~ 151 (151)
T 2v1o_A 130 QEQEEEGRKRYEAQKLERMETK 151 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 4667888999999888887643
No 35
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.00 E-value=16 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=24.2
Q ss_pred CCCccCCCCe---eEEecCCccccccccccccccc
Q 015947 4 MCDFCGDQRS---IVYCRSDAACLCLSCDRNVHLA 35 (397)
Q Consensus 4 ~Cd~C~~a~A---~VyC~aD~A~LC~~CD~~vHsA 35 (397)
.|-.|...-. ++-|......+|..||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 3667776532 4559999999999999988853
No 36
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.01 E-value=35 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=17.3
Q ss_pred CCCCccCCCCeeEEecCCccccccccccccccc
Q 015947 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (397)
Q Consensus 3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsA 35 (397)
..|.+|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc
Confidence 468888874 3456677888777764
No 37
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.56 E-value=44 Score=24.94 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=37.0
Q ss_pred eEEecCCc----cccccccccccccccchh----hcccccccccccCCCC--ceeeecCCCcccCcccccCc
Q 015947 14 IVYCRSDA----ACLCLSCDRNVHLANALS----KRHSRTLLCERCNSQP--ALVRCAEERVSLCQNCDWIG 75 (397)
Q Consensus 14 ~VyC~aD~----A~LC~~CD~~vHsAN~La----~RH~RvpLCd~C~s~P--A~v~C~~D~asLC~~CD~~~ 75 (397)
.+||+.|= +..|..|+..|.. ..+. .-|..-..|..|...= ...+-......+|..|....
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 46888883 4579999998873 2222 2355556677777552 22333344445788886543
No 38
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.17 E-value=55 Score=26.22 Aligned_cols=59 Identities=20% Similarity=0.407 Sum_probs=34.3
Q ss_pred CCCCCCccCCCCeeEEecCCccccccccccccccccchhhcccccccccccCCCCceeeecCCC--cccCcccccCc
Q 015947 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER--VSLCQNCDWIG 75 (397)
Q Consensus 1 M~~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpLCd~C~s~PA~v~C~~D~--asLC~~CD~~~ 75 (397)
|...|-.|...... ...-.-|..|+..+ .+..+|.-|+..-.. |.+|. ..+|..|..-+
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~----------~~~afCPeCgq~Le~--lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDF----------SLQALCPDCRQPLQV--LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEE----------EEEEECSSSCSCCCE--EEETTEEEECCTTTTCCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccC----------CCcccCcchhhHHHH--HHhcCCcCeeeccCCCEe
Confidence 77888888876442 23344577777532 233467777744333 44443 46787775443
Done!