Query 015949
Match_columns 397
No_of_seqs 237 out of 1551
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 2E-57 4.4E-62 462.9 32.0 274 20-305 2-304 (408)
2 PRK11573 hypothetical protein; 100.0 1E-57 2.2E-62 465.4 29.5 271 23-305 2-304 (413)
3 COG4536 CorB Putative Mg2+ and 100.0 3.3E-56 7.2E-61 433.5 21.0 284 12-305 2-317 (423)
4 COG1253 TlyC Hemolysins and re 100.0 2E-51 4.4E-56 421.6 29.9 283 12-305 3-321 (429)
5 KOG2118 Predicted membrane pro 100.0 2.4E-44 5.1E-49 372.9 8.7 392 3-397 3-416 (498)
6 PF01595 DUF21: Domain of unkn 100.0 1.7E-28 3.8E-33 222.9 20.5 169 15-191 2-183 (183)
7 COG4535 CorC Putative Mg2+ and 99.9 9.9E-27 2.1E-31 215.1 9.2 148 149-305 19-182 (293)
8 PRK15094 magnesium/cobalt effl 99.9 5.2E-24 1.1E-28 208.6 11.9 143 154-305 24-182 (292)
9 TIGR01302 IMP_dehydrog inosine 99.1 1.8E-10 3.9E-15 119.5 10.3 131 163-305 43-194 (450)
10 TIGR00400 mgtE Mg2+ transporte 99.1 1.9E-10 4.1E-15 119.4 10.0 133 164-305 89-245 (449)
11 COG4109 Predicted transcriptio 98.9 3E-09 6.4E-14 104.5 6.9 111 192-305 171-299 (432)
12 COG3448 CBS-domain-containing 98.8 2.6E-07 5.6E-12 89.2 16.2 135 164-305 202-365 (382)
13 PRK05567 inosine 5'-monophosph 98.8 2.9E-08 6.3E-13 104.1 10.7 130 163-305 50-198 (486)
14 cd04605 CBS_pair_MET2_assoc Th 98.5 2.6E-07 5.7E-12 75.5 6.4 90 215-305 3-105 (110)
15 cd04626 CBS_pair_13 The CBS do 98.4 4.3E-07 9.3E-12 74.5 5.9 89 215-305 2-106 (111)
16 cd04623 CBS_pair_10 The CBS do 98.4 5.3E-07 1.1E-11 73.7 6.2 89 215-305 2-108 (113)
17 cd04641 CBS_pair_28 The CBS do 98.4 1.1E-06 2.3E-11 73.5 7.3 90 215-305 2-115 (120)
18 cd04600 CBS_pair_HPP_assoc Thi 98.4 9.7E-07 2.1E-11 73.7 7.0 90 215-305 3-119 (124)
19 cd04596 CBS_pair_DRTGG_assoc T 98.4 1.1E-06 2.4E-11 71.8 6.9 89 214-305 2-103 (108)
20 COG2524 Predicted transcriptio 98.3 4.2E-07 9.1E-12 86.3 4.6 108 195-305 163-284 (294)
21 cd04588 CBS_pair_CAP-ED_DUF294 98.3 1.2E-06 2.5E-11 71.7 6.6 90 215-305 2-105 (110)
22 cd04603 CBS_pair_KefB_assoc Th 98.3 1.8E-06 3.9E-11 71.3 7.5 90 215-305 2-106 (111)
23 cd04613 CBS_pair_SpoIVFB_EriC_ 98.3 9E-07 2E-11 72.4 5.7 90 215-305 2-109 (114)
24 PRK10892 D-arabinose 5-phospha 98.3 6.9E-07 1.5E-11 88.7 5.9 102 202-305 200-318 (326)
25 cd04803 CBS_pair_15 The CBS do 98.3 1.6E-06 3.5E-11 72.2 6.8 90 215-305 2-117 (122)
26 cd04631 CBS_pair_18 The CBS do 98.3 1.2E-06 2.7E-11 73.1 6.2 90 215-305 2-120 (125)
27 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 1.7E-06 3.6E-11 70.6 6.8 90 215-305 2-106 (111)
28 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 1.8E-06 3.9E-11 70.4 6.9 90 215-305 2-106 (111)
29 cd04642 CBS_pair_29 The CBS do 98.3 2.6E-06 5.6E-11 71.9 7.8 90 215-305 2-121 (126)
30 cd04630 CBS_pair_17 The CBS do 98.3 2.1E-06 4.5E-11 71.0 6.6 89 215-305 2-109 (114)
31 cd04639 CBS_pair_26 The CBS do 98.3 2E-06 4.2E-11 70.4 6.1 90 215-305 2-106 (111)
32 cd04610 CBS_pair_ParBc_assoc T 98.3 2.9E-06 6.4E-11 68.8 7.1 88 215-305 3-102 (107)
33 cd04635 CBS_pair_22 The CBS do 98.2 3E-06 6.5E-11 70.5 6.6 90 215-305 2-117 (122)
34 cd04590 CBS_pair_CorC_HlyC_ass 98.2 2.8E-06 6.1E-11 69.5 6.3 90 214-305 1-106 (111)
35 cd04593 CBS_pair_EriC_assoc_ba 98.2 2.8E-06 6E-11 70.2 6.3 89 216-305 3-110 (115)
36 cd04636 CBS_pair_23 The CBS do 98.2 2.9E-06 6.3E-11 72.1 6.5 89 215-305 2-127 (132)
37 cd04624 CBS_pair_11 The CBS do 98.2 3.5E-06 7.5E-11 69.0 6.6 90 215-305 2-107 (112)
38 cd04638 CBS_pair_25 The CBS do 98.2 4.9E-06 1.1E-10 67.6 7.0 87 215-305 2-101 (106)
39 PRK11543 gutQ D-arabinose 5-ph 98.2 2.3E-06 4.9E-11 84.7 5.9 102 203-305 196-313 (321)
40 cd04585 CBS_pair_ACT_assoc2 Th 98.2 3.8E-06 8.2E-11 69.4 6.2 90 215-305 2-117 (122)
41 cd04599 CBS_pair_GGDEF_assoc2 98.2 5.3E-06 1.2E-10 67.0 6.8 87 215-305 2-100 (105)
42 cd04621 CBS_pair_8 The CBS dom 98.2 4.5E-06 9.8E-11 72.0 6.5 89 215-305 2-130 (135)
43 cd04583 CBS_pair_ABC_OpuCA_ass 98.1 5.8E-06 1.3E-10 67.1 6.7 89 215-305 3-104 (109)
44 cd04615 CBS_pair_2 The CBS dom 98.1 5.2E-06 1.1E-10 68.1 6.0 89 216-305 3-108 (113)
45 TIGR00393 kpsF KpsF/GutQ famil 98.1 3.5E-06 7.5E-11 81.1 5.7 97 204-302 155-267 (268)
46 cd04801 CBS_pair_M50_like This 98.1 5.5E-06 1.2E-10 68.3 5.8 90 215-305 2-109 (114)
47 PRK07807 inosine 5-monophospha 98.1 5.6E-06 1.2E-10 86.7 7.0 100 201-305 86-198 (479)
48 cd04594 CBS_pair_EriC_assoc_ar 98.1 9.5E-06 2.1E-10 66.0 6.9 83 218-305 5-99 (104)
49 cd04643 CBS_pair_30 The CBS do 98.1 7.2E-06 1.6E-10 67.4 6.2 88 215-305 2-111 (116)
50 cd04601 CBS_pair_IMPDH This cd 98.1 9.7E-06 2.1E-10 65.9 6.9 89 215-305 3-105 (110)
51 cd04589 CBS_pair_CAP-ED_DUF294 98.1 7.7E-06 1.7E-10 67.0 6.3 89 215-305 2-106 (111)
52 cd04619 CBS_pair_6 The CBS dom 98.1 9.9E-06 2.2E-10 67.0 6.8 90 215-305 2-109 (114)
53 cd04800 CBS_pair_CAP-ED_DUF294 98.1 1.1E-05 2.5E-10 65.8 7.0 89 215-305 2-106 (111)
54 cd04629 CBS_pair_16 The CBS do 98.1 6.7E-06 1.5E-10 67.4 5.5 89 215-305 2-109 (114)
55 PRK01862 putative voltage-gate 98.1 4.6E-06 1E-10 89.3 5.6 103 200-305 443-564 (574)
56 cd04582 CBS_pair_ABC_OpuCA_ass 98.1 1.3E-05 2.7E-10 65.0 6.9 87 215-305 2-101 (106)
57 cd04587 CBS_pair_CAP-ED_DUF294 98.1 7.9E-06 1.7E-10 66.9 5.7 90 215-305 2-108 (113)
58 cd04620 CBS_pair_7 The CBS dom 98.0 9.3E-06 2E-10 66.9 6.1 90 215-305 2-110 (115)
59 cd04595 CBS_pair_DHH_polyA_Pol 98.0 1E-05 2.2E-10 66.2 6.2 89 215-305 3-105 (110)
60 cd04586 CBS_pair_BON_assoc Thi 98.0 8.3E-06 1.8E-10 69.6 5.7 89 215-305 3-130 (135)
61 cd04607 CBS_pair_NTP_transfera 98.0 1.2E-05 2.5E-10 66.2 6.3 89 216-305 4-108 (113)
62 cd04618 CBS_pair_5 The CBS dom 98.0 2.1E-05 4.5E-10 64.1 7.5 85 215-304 2-92 (98)
63 cd04627 CBS_pair_14 The CBS do 98.0 9.7E-06 2.1E-10 67.9 5.6 90 215-305 2-118 (123)
64 cd04604 CBS_pair_KpsF_GutQ_ass 98.0 1.4E-05 3.1E-10 65.3 6.4 90 215-305 3-109 (114)
65 cd04584 CBS_pair_ACT_assoc Thi 98.0 1.3E-05 2.8E-10 66.5 6.1 89 215-305 2-116 (121)
66 cd04637 CBS_pair_24 The CBS do 98.0 6.7E-06 1.4E-10 68.5 4.4 90 215-305 2-117 (122)
67 cd04622 CBS_pair_9 The CBS dom 98.0 2.1E-05 4.5E-10 64.3 7.3 90 215-305 2-108 (113)
68 cd02205 CBS_pair The CBS domai 98.0 1.8E-05 3.8E-10 63.5 6.1 90 215-305 2-108 (113)
69 cd04609 CBS_pair_PALP_assoc2 T 97.9 1.9E-05 4.1E-10 64.0 6.0 88 215-305 2-105 (110)
70 cd04633 CBS_pair_20 The CBS do 97.9 1.6E-05 3.4E-10 66.0 5.6 89 215-305 2-116 (121)
71 cd04802 CBS_pair_3 The CBS dom 97.9 2.6E-05 5.6E-10 63.8 6.5 89 215-305 2-107 (112)
72 cd04606 CBS_pair_Mg_transporte 97.9 1.8E-05 4E-10 64.7 5.5 84 219-305 2-103 (109)
73 cd04632 CBS_pair_19 The CBS do 97.9 2.3E-05 5E-10 66.0 6.1 90 215-305 2-123 (128)
74 cd04617 CBS_pair_4 The CBS dom 97.9 2.5E-05 5.4E-10 65.0 6.2 90 215-305 2-113 (118)
75 TIGR01137 cysta_beta cystathio 97.8 1.8E-05 3.9E-10 82.1 5.4 99 201-305 332-447 (454)
76 cd04625 CBS_pair_12 The CBS do 97.8 3.2E-05 6.8E-10 63.3 5.6 89 215-305 2-107 (112)
77 cd04634 CBS_pair_21 The CBS do 97.8 3.6E-05 7.9E-10 66.7 6.1 89 215-305 2-138 (143)
78 PLN02274 inosine-5'-monophosph 97.8 6E-05 1.3E-09 79.5 8.4 134 163-305 63-215 (505)
79 PTZ00314 inosine-5'-monophosph 97.8 3.9E-05 8.5E-10 80.8 7.0 131 163-305 59-211 (495)
80 cd04602 CBS_pair_IMPDH_2 This 97.8 4.5E-05 9.7E-10 63.0 6.0 90 215-305 3-109 (114)
81 cd04591 CBS_pair_EriC_assoc_eu 97.8 5E-05 1.1E-09 62.4 6.1 90 214-305 2-100 (105)
82 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 4.3E-05 9.4E-10 80.0 7.0 101 200-305 84-196 (475)
83 cd04614 CBS_pair_1 The CBS dom 97.8 7.1E-05 1.5E-09 60.5 6.7 85 215-305 2-91 (96)
84 cd04640 CBS_pair_27 The CBS do 97.8 4.3E-05 9.3E-10 64.4 5.5 89 216-305 3-121 (126)
85 COG3620 Predicted transcriptio 97.7 2.9E-05 6.3E-10 69.1 4.2 117 183-305 39-177 (187)
86 PF00571 CBS: CBS domain CBS d 97.6 4E-05 8.7E-10 55.8 2.8 48 258-305 2-49 (57)
87 PRK07107 inosine 5-monophospha 97.6 7.4E-05 1.6E-09 78.8 5.9 88 217-305 108-213 (502)
88 cd04598 CBS_pair_GGDEF_assoc T 97.6 8.8E-05 1.9E-09 61.3 4.9 89 216-305 3-114 (119)
89 cd04608 CBS_pair_PALP_assoc Th 97.5 6.4E-05 1.4E-09 63.7 3.4 90 215-305 3-118 (124)
90 cd04614 CBS_pair_1 The CBS dom 97.4 0.00046 1E-08 55.7 6.5 43 263-305 1-43 (96)
91 cd04592 CBS_pair_EriC_assoc_eu 97.4 0.00032 7E-09 60.7 5.6 82 215-297 2-120 (133)
92 COG2239 MgtE Mg/Co/Ni transpor 97.4 0.00073 1.6E-08 70.2 9.1 115 186-305 114-246 (451)
93 COG0517 FOG: CBS domain [Gener 97.3 0.00078 1.7E-08 55.1 7.0 94 208-304 3-113 (117)
94 PRK15094 magnesium/cobalt effl 97.3 0.00019 4.1E-09 70.7 3.7 53 253-305 65-120 (292)
95 COG1253 TlyC Hemolysins and re 97.1 0.099 2.1E-06 54.3 21.9 53 253-305 204-259 (429)
96 cd04619 CBS_pair_6 The CBS dom 97.1 0.00092 2E-08 55.1 5.5 42 264-305 2-43 (114)
97 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0012 2.7E-08 55.8 5.5 43 263-305 2-44 (124)
98 cd04593 CBS_pair_EriC_assoc_ba 96.9 0.00066 1.4E-08 55.8 2.5 42 264-305 2-43 (115)
99 cd04627 CBS_pair_14 The CBS do 96.9 0.0014 3.1E-08 54.6 4.6 42 264-305 2-44 (123)
100 COG3620 Predicted transcriptio 96.8 0.0013 2.9E-08 58.7 4.3 50 255-305 65-114 (187)
101 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.00082 1.8E-08 54.0 2.7 42 263-305 1-42 (105)
102 PRK11543 gutQ D-arabinose 5-ph 96.8 0.00054 1.2E-08 67.8 1.7 50 255-304 197-248 (321)
103 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0013 2.8E-08 53.6 3.5 42 263-305 1-42 (111)
104 cd04641 CBS_pair_28 The CBS do 96.7 0.0034 7.4E-08 52.1 5.9 43 263-305 1-43 (120)
105 cd04596 CBS_pair_DRTGG_assoc T 96.7 0.0015 3.3E-08 53.0 3.3 43 263-305 2-44 (108)
106 cd04642 CBS_pair_29 The CBS do 96.6 0.0033 7.1E-08 52.7 5.2 42 264-305 2-43 (126)
107 cd04582 CBS_pair_ABC_OpuCA_ass 96.6 0.0013 2.9E-08 52.9 2.7 43 263-305 1-43 (106)
108 PRK01862 putative voltage-gate 96.6 0.0013 2.8E-08 70.6 3.2 52 254-305 446-497 (574)
109 cd04624 CBS_pair_11 The CBS do 96.6 0.00093 2E-08 54.4 1.7 43 263-305 1-43 (112)
110 cd04622 CBS_pair_9 The CBS dom 96.6 0.0013 2.7E-08 53.6 2.4 42 263-305 1-42 (113)
111 cd04643 CBS_pair_30 The CBS do 96.6 0.0047 1E-07 50.5 5.6 42 264-305 2-43 (116)
112 cd04603 CBS_pair_KefB_assoc Th 96.6 0.0019 4.2E-08 53.0 3.1 42 264-305 2-43 (111)
113 TIGR01137 cysta_beta cystathio 96.5 0.0023 4.9E-08 66.5 4.1 52 254-305 334-385 (454)
114 cd04610 CBS_pair_ParBc_assoc T 96.5 0.002 4.4E-08 51.8 3.0 42 263-305 2-43 (107)
115 cd04609 CBS_pair_PALP_assoc2 T 96.5 0.0015 3.2E-08 52.7 2.1 41 264-305 2-42 (110)
116 cd04613 CBS_pair_SpoIVFB_EriC_ 96.5 0.0022 4.8E-08 52.1 3.0 43 263-305 1-43 (114)
117 COG3448 CBS-domain-containing 96.5 0.0027 5.9E-08 61.9 3.9 52 254-305 244-295 (382)
118 PRK14869 putative manganese-de 96.5 0.0053 1.1E-07 65.4 6.5 50 256-305 247-297 (546)
119 cd04612 CBS_pair_SpoIVFB_EriC_ 96.4 0.0031 6.8E-08 51.0 3.6 42 263-305 1-42 (111)
120 cd04583 CBS_pair_ABC_OpuCA_ass 96.4 0.0046 1E-07 49.8 4.6 43 263-305 2-44 (109)
121 cd04605 CBS_pair_MET2_assoc Th 96.4 0.0033 7.2E-08 50.9 3.7 43 263-305 2-44 (110)
122 cd04595 CBS_pair_DHH_polyA_Pol 96.4 0.0031 6.8E-08 51.2 3.5 42 263-305 2-43 (110)
123 KOG0474 Cl- channel CLC-7 and 96.4 0.005 1.1E-07 65.3 5.7 103 200-305 578-740 (762)
124 cd02205 CBS_pair The CBS domai 96.4 0.0067 1.4E-07 48.2 5.1 42 264-305 2-43 (113)
125 cd04620 CBS_pair_7 The CBS dom 96.3 0.0073 1.6E-07 49.4 5.4 42 263-305 1-43 (115)
126 TIGR00400 mgtE Mg2+ transporte 96.3 0.003 6.5E-08 65.9 3.8 53 253-305 129-186 (449)
127 cd04801 CBS_pair_M50_like This 96.3 0.0032 6.9E-08 51.6 3.2 43 263-305 1-44 (114)
128 cd04585 CBS_pair_ACT_assoc2 Th 96.3 0.0031 6.7E-08 51.7 3.0 42 263-305 1-42 (122)
129 cd04623 CBS_pair_10 The CBS do 96.3 0.007 1.5E-07 49.0 4.9 43 263-305 1-43 (113)
130 cd04635 CBS_pair_22 The CBS do 96.3 0.0053 1.1E-07 50.7 4.2 43 263-305 1-43 (122)
131 cd04800 CBS_pair_CAP-ED_DUF294 96.3 0.011 2.4E-07 47.9 6.0 42 263-305 1-42 (111)
132 cd04601 CBS_pair_IMPDH This cd 96.3 0.0045 9.7E-08 50.0 3.7 43 263-305 2-44 (110)
133 cd04803 CBS_pair_15 The CBS do 96.3 0.012 2.6E-07 48.6 6.3 42 264-305 2-43 (122)
134 TIGR01302 IMP_dehydrog inosine 96.2 0.0078 1.7E-07 62.9 5.9 50 256-305 81-133 (450)
135 cd04618 CBS_pair_5 The CBS dom 96.2 0.0073 1.6E-07 49.0 4.6 42 264-305 2-44 (98)
136 cd04602 CBS_pair_IMPDH_2 This 96.2 0.0058 1.3E-07 50.2 4.0 43 263-305 2-47 (114)
137 cd04611 CBS_pair_PAS_GGDEF_DUF 96.2 0.0025 5.4E-08 51.6 1.6 41 264-305 2-42 (111)
138 cd04590 CBS_pair_CorC_HlyC_ass 96.2 0.0057 1.2E-07 49.6 3.8 42 264-305 2-44 (111)
139 cd04630 CBS_pair_17 The CBS do 96.2 0.017 3.6E-07 47.3 6.6 43 263-305 1-44 (114)
140 cd04598 CBS_pair_GGDEF_assoc T 96.1 0.0052 1.1E-07 50.5 3.5 42 263-305 1-43 (119)
141 cd04600 CBS_pair_HPP_assoc Thi 96.1 0.0062 1.3E-07 50.4 4.0 43 263-305 2-44 (124)
142 cd04586 CBS_pair_BON_assoc Thi 96.1 0.014 3.1E-07 49.4 6.2 43 263-305 2-44 (135)
143 cd04588 CBS_pair_CAP-ED_DUF294 96.1 0.0045 9.7E-08 50.2 2.8 42 263-305 1-42 (110)
144 cd04607 CBS_pair_NTP_transfera 96.0 0.0042 9.1E-08 50.8 2.5 41 265-305 4-44 (113)
145 PRK07807 inosine 5-monophospha 96.0 0.0061 1.3E-07 64.1 4.0 51 255-305 89-139 (479)
146 cd04621 CBS_pair_8 The CBS dom 96.0 0.0034 7.4E-08 53.9 1.7 42 264-305 2-43 (135)
147 cd04626 CBS_pair_13 The CBS do 96.0 0.0046 9.9E-08 50.3 2.3 42 264-305 2-43 (111)
148 cd04629 CBS_pair_16 The CBS do 95.9 0.0061 1.3E-07 49.6 2.8 43 263-305 1-43 (114)
149 cd04633 CBS_pair_20 The CBS do 95.8 0.0062 1.3E-07 50.2 2.5 41 264-305 2-42 (121)
150 cd04615 CBS_pair_2 The CBS dom 95.8 0.014 3E-07 47.4 4.5 42 264-305 2-43 (113)
151 cd04636 CBS_pair_23 The CBS do 95.8 0.004 8.8E-08 52.6 1.2 43 263-305 1-43 (132)
152 cd04631 CBS_pair_18 The CBS do 95.7 0.0079 1.7E-07 49.9 2.9 43 263-305 1-44 (125)
153 cd04639 CBS_pair_26 The CBS do 95.6 0.014 3.1E-07 47.2 3.9 42 264-305 2-43 (111)
154 cd04587 CBS_pair_CAP-ED_DUF294 95.6 0.026 5.6E-07 45.8 5.4 41 264-305 2-42 (113)
155 COG2905 Predicted signal-trans 95.5 0.017 3.7E-07 60.9 5.0 99 203-305 148-263 (610)
156 KOG1764 5'-AMP-activated prote 95.5 0.025 5.5E-07 57.8 6.2 103 202-305 224-352 (381)
157 cd04594 CBS_pair_EriC_assoc_ar 95.5 0.013 2.8E-07 47.3 3.2 39 266-305 4-42 (104)
158 cd04606 CBS_pair_Mg_transporte 95.4 0.013 2.9E-07 47.5 2.9 38 268-305 2-44 (109)
159 PRK05567 inosine 5'-monophosph 95.3 0.012 2.6E-07 62.1 3.1 49 257-305 89-137 (486)
160 PF00571 CBS: CBS domain CBS d 95.3 0.011 2.4E-07 42.7 2.0 35 206-243 1-35 (57)
161 smart00116 CBS Domain in cysta 95.3 0.018 3.8E-07 38.6 2.9 41 264-304 1-41 (49)
162 cd04597 CBS_pair_DRTGG_assoc2 95.3 0.018 3.8E-07 48.0 3.4 51 255-305 58-108 (113)
163 KOG1764 5'-AMP-activated prote 95.2 0.03 6.5E-07 57.3 5.6 95 210-305 158-279 (381)
164 cd04637 CBS_pair_24 The CBS do 95.1 0.025 5.5E-07 46.7 3.8 41 264-305 2-42 (122)
165 PLN02274 inosine-5'-monophosph 95.0 0.041 8.8E-07 58.4 6.0 45 261-305 106-153 (505)
166 cd04604 CBS_pair_KpsF_GutQ_ass 94.9 0.027 5.9E-07 45.6 3.5 42 264-305 3-44 (114)
167 COG2239 MgtE Mg/Co/Ni transpor 94.7 0.041 8.9E-07 57.4 5.0 51 255-305 132-187 (451)
168 cd04802 CBS_pair_3 The CBS dom 94.6 0.021 4.6E-07 46.3 2.2 42 263-305 1-42 (112)
169 TIGR01303 IMP_DH_rel_1 IMP deh 94.4 0.035 7.5E-07 58.4 3.6 50 255-305 88-137 (475)
170 PRK10070 glycine betaine trans 94.2 0.1 2.3E-06 53.7 6.5 99 204-305 274-386 (400)
171 PTZ00314 inosine-5'-monophosph 93.7 0.11 2.4E-06 54.9 5.7 49 257-305 98-149 (495)
172 PRK07107 inosine 5-monophospha 93.6 0.065 1.4E-06 56.8 3.8 43 263-305 105-150 (502)
173 PRK10892 D-arabinose 5-phospha 93.3 0.076 1.6E-06 52.7 3.7 52 254-305 201-254 (326)
174 TIGR03520 GldE gliding motilit 93.1 5.9 0.00013 40.9 17.3 53 253-305 189-244 (408)
175 cd04640 CBS_pair_27 The CBS do 92.5 0.17 3.6E-06 42.3 4.1 42 264-305 2-43 (126)
176 TIGR01186 proV glycine betaine 92.0 0.45 9.8E-06 48.4 7.3 85 218-305 254-351 (363)
177 cd04592 CBS_pair_EriC_assoc_eu 92.0 0.2 4.3E-06 43.2 4.1 42 264-305 2-43 (133)
178 cd04632 CBS_pair_19 The CBS do 91.8 0.24 5.1E-06 41.3 4.2 43 263-305 1-43 (128)
179 PRK14869 putative manganese-de 91.6 0.18 3.8E-06 53.9 4.0 51 255-305 68-118 (546)
180 cd04617 CBS_pair_4 The CBS dom 91.4 0.28 6E-06 40.4 4.2 42 264-305 2-43 (118)
181 COG2524 Predicted transcriptio 91.4 0.11 2.4E-06 50.1 1.8 51 254-305 171-221 (294)
182 COG4109 Predicted transcriptio 91.2 0.12 2.6E-06 51.9 2.0 112 256-395 189-305 (432)
183 KOG2550 IMP dehydrogenase/GMP 90.8 0.23 5E-06 50.7 3.6 134 163-305 71-221 (503)
184 TIGR00393 kpsF KpsF/GutQ famil 90.6 0.23 5E-06 47.5 3.3 51 255-305 155-206 (268)
185 COG2905 Predicted signal-trans 90.4 0.48 1E-05 50.3 5.6 51 255-305 149-199 (610)
186 cd04591 CBS_pair_EriC_assoc_eu 90.1 0.35 7.5E-06 39.3 3.6 41 265-305 4-47 (105)
187 cd04584 CBS_pair_ACT_assoc Thi 88.1 0.55 1.2E-05 38.3 3.4 43 263-305 1-43 (121)
188 cd04634 CBS_pair_21 The CBS do 87.5 0.62 1.3E-05 40.0 3.5 42 263-305 1-42 (143)
189 COG4536 CorB Putative Mg2+ and 86.6 0.44 9.6E-06 48.3 2.4 75 230-304 170-252 (423)
190 PRK10070 glycine betaine trans 84.9 1.1 2.5E-05 46.1 4.4 38 268-305 290-327 (400)
191 cd04597 CBS_pair_DRTGG_assoc2 83.4 1.2 2.6E-05 36.8 3.3 37 204-243 58-94 (113)
192 TIGR03415 ABC_choXWV_ATP choli 80.6 2.4 5.1E-05 43.5 4.8 101 194-305 264-373 (382)
193 TIGR01186 proV glycine betaine 80.5 3.1 6.7E-05 42.4 5.6 40 266-305 253-292 (363)
194 cd04625 CBS_pair_12 The CBS do 79.1 2.7 5.8E-05 33.6 3.8 41 264-305 2-42 (112)
195 KOG0475 Cl- channel CLC-3 and 77.2 5.4 0.00012 43.1 6.2 101 203-305 542-688 (696)
196 cd04638 CBS_pair_25 The CBS do 72.6 5.7 0.00012 31.5 4.1 42 264-305 2-43 (106)
197 COG4175 ProV ABC-type proline/ 70.8 4.7 0.0001 40.5 3.7 111 192-305 262-376 (386)
198 COG0517 FOG: CBS domain [Gener 65.6 9.7 0.00021 30.4 4.1 36 205-243 63-99 (117)
199 PRK11573 hypothetical protein; 65.1 1.8E+02 0.0038 30.2 17.2 53 253-305 185-240 (413)
200 smart00116 CBS Domain in cysta 51.5 19 0.0004 23.1 2.9 27 216-243 2-28 (49)
201 PF14787 zf-CCHC_5: GAG-polypr 44.5 11 0.00025 25.3 0.9 22 354-376 11-32 (36)
202 PF03563 Bunya_G2: Bunyavirus 42.5 76 0.0017 31.0 6.5 26 132-157 209-234 (285)
203 TIGR00811 sit silicon transpor 41.6 69 0.0015 33.7 6.4 139 10-161 255-427 (545)
204 PHA00728 hypothetical protein 36.3 22 0.00047 30.5 1.6 50 189-243 36-85 (151)
205 PF14147 Spore_YhaL: Sporulati 36.1 37 0.00081 24.7 2.5 19 11-31 2-20 (52)
206 COG4535 CorC Putative Mg2+ and 33.3 29 0.00062 33.5 2.0 51 254-304 66-119 (293)
207 PRK08053 sulfur carrier protei 29.7 53 0.0011 24.6 2.6 31 264-294 8-38 (66)
208 cd00565 ThiS ThiaminS ubiquiti 28.9 56 0.0012 24.3 2.7 31 264-294 7-37 (65)
209 CHL00038 psbL photosystem II p 28.3 78 0.0017 21.5 2.8 19 11-29 18-36 (38)
210 PF02419 PsbL: PsbL protein; 27.1 94 0.002 21.0 3.1 19 11-29 17-35 (37)
211 PRK07440 hypothetical protein; 25.8 66 0.0014 24.6 2.6 31 264-294 12-42 (70)
212 PF15284 PAGK: Phage-encoded v 24.6 96 0.0021 23.4 3.1 23 15-37 6-28 (61)
213 PRK05659 sulfur carrier protei 24.4 77 0.0017 23.4 2.7 29 265-293 9-37 (66)
214 PF11131 PhrC_PhrF: Rap-phr ex 22.9 70 0.0015 21.6 1.9 27 18-46 5-31 (37)
215 PRK00753 psbL photosystem II r 22.4 1E+02 0.0022 21.0 2.6 19 11-29 19-37 (39)
216 KOG2550 IMP dehydrogenase/GMP 22.3 59 0.0013 33.8 2.2 52 185-243 156-207 (503)
217 PF01036 Bac_rhodopsin: Bacter 22.3 6.3E+02 0.014 23.4 11.1 43 108-152 140-183 (222)
218 PRK05863 sulfur carrier protei 21.9 85 0.0018 23.5 2.5 30 265-294 9-38 (65)
219 TIGR00827 EIIC-GAT PTS system, 21.7 3.5E+02 0.0076 28.2 7.6 63 105-172 146-208 (407)
220 PF14163 SieB: Superinfection 21.4 4.3E+02 0.0093 23.0 7.3 18 186-203 78-95 (151)
221 PF05653 Mg_trans_NIPA: Magnes 21.3 7E+02 0.015 24.6 9.5 51 20-77 9-59 (300)
222 PF14044 NETI: NETI protein 20.5 1.1E+02 0.0023 22.9 2.6 30 217-249 2-35 (57)
223 TIGR01683 thiS thiamine biosyn 20.3 1E+02 0.0022 22.8 2.7 30 265-294 7-36 (64)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=2e-57 Score=462.92 Aligned_cols=274 Identities=26% Similarity=0.434 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHh----hH
Q 015949 20 TLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDS----LV 95 (397)
Q Consensus 20 ~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~~----~~ 95 (397)
++|+++||||||+|+|++|+++.+++.++++|++ .|+++++++++|+++|+|+++||+++|++.+.++.. ++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999875 377899999999999999999999999876554322 22
Q ss_pred HH--------HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhh---hcCCCccc
Q 015949 96 PA--------WGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLL---LGKGNEAL 164 (397)
Q Consensus 96 ~~--------~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~l---lg~~~~~~ 164 (397)
+. ..+++++|+++++|||++||++|.+||++++++++||+++++++|+|++|+++++++++ +|.++ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 21 12345667889999999999999999999999999999999999999999999987765 46543 35
Q ss_pred ccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-
Q 015949 165 FRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV- 243 (397)
Q Consensus 165 ~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV- 243 (397)
+|+|||+.+++. +.++| ++++|++|++|+|+|++++|+|+||||.++++++.+++++ ++++.+.++||||+||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 33456 6899999999999999999999999999999999999998 9999999999999999
Q ss_pred -------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 244 -------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 244 -------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
||++....++..++.++ +|++++||+++++.++|++||+++.|||+|+||||++.|++|.+
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~e 304 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLE 304 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHH
Confidence 77775433334457787 79999999999999999999999999999999999999999995
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=1e-57 Score=465.43 Aligned_cols=271 Identities=21% Similarity=0.330 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH----hhH---
Q 015949 23 VLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLD----SLV--- 95 (397)
Q Consensus 23 i~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~----~~~--- 95 (397)
+++||||||+|+|++|+++.+|+.++++|+++ |+++++++++|+++|+|+|+||+++|++.+.+.. .++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999864 7789999999999999999999999887654432 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhh---hcCCC----cccccHH
Q 015949 96 PAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLL---LGKGN----EALFRRA 168 (397)
Q Consensus 96 ~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~l---lg~~~----~~~~s~e 168 (397)
+.+.+++++|+++++|||++||++|.+||+++++++++|+++++++|+|++|+++++++.+ +|.++ ...+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 2334566788999999999999999999999999999999999999999999998877654 56543 2468999
Q ss_pred HHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-----
Q 015949 169 ELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV----- 243 (397)
Q Consensus 169 EL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV----- 243 (397)
||+.+++.+ . +.++++|++|++|+|+|++++|+|+||||.+|++++.+++++ ++++.+.++|||||||
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999842 2 259999999999999999999999999999999999999998 9999999999999999
Q ss_pred ---------hhhcccCCC-CC---CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 244 ---------KNLLTIHPE-DE---VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 244 ---------kDll~~~~~-~~---~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
||++....+ ++ ..+.++ +||+.|||+++++.++|++||+++.|||+|+||||++.|+++.+
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTle 304 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVE 304 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHH
Confidence 777653221 21 224455 79999999999999999999999999999999999999999995
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-56 Score=433.49 Aligned_cols=284 Identities=24% Similarity=0.375 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 015949 12 FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFL 91 (397)
Q Consensus 12 ~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~ 91 (397)
.|..++++++|+++||||||+|+|+++++|.|++.++++|+++ |+++.+++++|+++++++|||||++|++.+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999975 889999999999999999999999998765443
Q ss_pred Hh----hHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhh---hhcCCC
Q 015949 92 DS----LVPA---WGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDL---LLGKGN 161 (397)
Q Consensus 92 ~~----~~~~---~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~---llg~~~ 161 (397)
.. +++. ..|..++|+++++|+|++||++|..||++++..+++++.++.++|+|++|+++++++. +||.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 32 3332 2467788999999999999999999999999999999999999999999999998775 467652
Q ss_pred ----cccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949 162 ----EALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG 237 (397)
Q Consensus 162 ----~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g 237 (397)
+...+.|||+.+|+. ++++|...+++++|+.++|+|++.||+|||+||.+|..++.|++.+ ++++.+.++.
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 457899999999994 4455778788999999999999999999999999999999999998 9999999999
Q ss_pred CCcccc--------------hhhcccCCCCC-C---CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949 238 HSRVPV--------------KNLLTIHPEDE-V---PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE 299 (397)
Q Consensus 238 ~SR~PV--------------kDll~~~~~~~-~---~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~ 299 (397)
|+|+|| ||+++...+.+ . ++..+ ..+|+|||+++|+.+.|..||+++.|+|+||||||++.
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~ 311 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQ 311 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEE
Confidence 999999 66666544332 2 23333 58999999999999999999999999999999999999
Q ss_pred cccccc
Q 015949 300 QPHVPI 305 (397)
Q Consensus 300 g~~~~~ 305 (397)
|+|+.+
T Consensus 312 GLVTLE 317 (423)
T COG4536 312 GLVTLE 317 (423)
T ss_pred eeeeHH
Confidence 999996
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=2e-51 Score=421.58 Aligned_cols=283 Identities=27% Similarity=0.452 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 015949 12 FFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFL 91 (397)
Q Consensus 12 ~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~ 91 (397)
.+..++++++|+++|||||++|+|++|++|.|+++++++|+++ |..++++.++++.+++++++||++++.....+.
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999999999999999999999999998754 778999999999999999999999987665443
Q ss_pred HhhH----HHHH---------HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhh-
Q 015949 92 DSLV----PAWG---------AIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLL- 157 (397)
Q Consensus 92 ~~~~----~~~~---------a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~ll- 157 (397)
...+ ..+. .++++|+++++|||++||++|.+||++++++.++++++++++++|++|++++++++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 1111 1457788999999999999999999999999999999999999999999999988764
Q ss_pred --cCC----CcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHH
Q 015949 158 --GKG----NEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMR 231 (397)
Q Consensus 158 --g~~----~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~ 231 (397)
|.+ +....+++|++ +++ ++.++|.++++|++|++|+|+|++++|+++||||++|++++.+++++ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 433 23356788888 776 46678999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCCCcccc--------------hhhcccCCCCC--CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC
Q 015949 232 LVLEKGHSRVPV--------------KNLLTIHPEDE--VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ 295 (397)
Q Consensus 232 ~i~~~g~SR~PV--------------kDll~~~~~~~--~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy 295 (397)
.+.++||||||| ||++.....++ ...... ++|+++|||++++.++|++||+++.|||+|+|||
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 999999999999 77777544332 223323 6799999999999999999999999999999999
Q ss_pred CCcccccccc
Q 015949 296 NDREQPHVPI 305 (397)
Q Consensus 296 G~~~g~~~~~ 305 (397)
|++.|++|.+
T Consensus 312 G~~~GlVTle 321 (429)
T COG1253 312 GGVEGLVTLE 321 (429)
T ss_pred CCeEEEeEHH
Confidence 9999999996
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=2.4e-44 Score=372.93 Aligned_cols=392 Identities=43% Similarity=0.584 Sum_probs=324.1
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhH-HHHHHHHHHHhcchhHHHHHHHHH
Q 015949 3 VRYECCETGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRK-HASKILPVVRRQHLLLCTLLFCNA 81 (397)
Q Consensus 3 ~~~~~~~~~~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~-~a~~il~l~~~~~~lL~tilign~ 81 (397)
....||++.++.+..++++|++++|+|||.++++++++-..++.+.+.|+.++++ .++++.+..++.+.+|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 4567999999999999999999999999999999999999999999999998886 788999999999999999999999
Q ss_pred HHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhhcCC
Q 015949 82 AAMEA-LPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKG 160 (397)
Q Consensus 82 ~a~~~-~~~~~~~~~~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~llg~~ 160 (397)
+++.+ ++++++..++.|.++.+++..++.||||+||++|.+|+..++..+.|+.++++++++|+.|+++++ ++++|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99999 999999888889999999999999999999999999999999999999999999999999999999 8889988
Q ss_pred CcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCc
Q 015949 161 NEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240 (397)
Q Consensus 161 ~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR 240 (397)
....+.+++++.++.+|++|+++ |+++++|..++.+++++.+++++|||||..++++++.+..++++....+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 87888999999999999999887 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--------------hhhcccC----CCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949 241 VPV--------------KNLLTIH----PEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH 302 (397)
Q Consensus 241 ~PV--------------kDll~~~----~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~ 302 (397)
||| ++++.+. +.+..++.+.++++.+++|+++++.+.+++||+++.|||+|+.. .+..+..
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~~~~~~~ 319 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-HVDIFVL 319 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecC-CcceeeE
Confidence 999 2233333 34567788888999999999999999999999999999999984 4445555
Q ss_pred ccccCCCCccceeeccCCcchhhHHhhhhhhhhhhhcCCCcc-cccccCCCCCCCccccCCccccccCCCCCCCCCCC-c
Q 015949 303 VPIEHSTDEREVRVDVDGQSHLKEKCLKTKRSLKKRNRLSHD-ANLHRGASTSKNWSRDFHSEVLHITDDPQRMENGE-W 380 (397)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 380 (397)
+........+.+....|.+..+.+......+....+...... ..+.+.....++|+...+..+++.+..+.+..+.. +
T Consensus 320 ~l~~~~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (498)
T KOG2118|consen 320 TLEDLEEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFEDLAELGE 399 (498)
T ss_pred eccchhhhcceeccccccccchhcccchhhcccccccccccchhhhhcccccccccCCCCCccccccccccccccccccc
Confidence 553211112233333333333344333333322222221110 00111334557888888888888887677766544 7
Q ss_pred ceEEEeehhHHHHHhhC
Q 015949 381 EAVGIITLEDVIEELLQ 397 (397)
Q Consensus 381 e~~giit~edv~eellq 397 (397)
...|++|+||++|+++|
T Consensus 400 ~~~~~~~~~~~~~~~~~ 416 (498)
T KOG2118|consen 400 IGHSVLTLESVIEPDES 416 (498)
T ss_pred cCccceehhhhhccccc
Confidence 78899999999998764
No 6
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.96 E-value=1.7e-28 Score=222.91 Aligned_cols=169 Identities=29% Similarity=0.472 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 015949 15 RVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLLFCNAAAMEALPIFLDSL 94 (397)
Q Consensus 15 ~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~tilign~~a~~~~~~~~~~~ 94 (397)
++++++++++++|||||+|+|++++++.+++.++++|++ .++++.++++||+++++|+++||++++.+.+.+....
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999884 4778999999999999999999999988765443322
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhh---cCCC--
Q 015949 95 --------VPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLL---GKGN-- 161 (397)
Q Consensus 95 --------~~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~ll---g~~~-- 161 (397)
.+.+.++++.++++++|||++||++|.+||++++.+.+|++++++++++|++++++++.++++ |.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 233455667788999999999999999999999999999999999999999999999888664 4443
Q ss_pred cccccHHHHHHHHHhhccccccCCCCCHHH
Q 015949 162 EALFRRAELKTLVDLHGNEAGKGGELTRDE 191 (397)
Q Consensus 162 ~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E 191 (397)
+..+|+|||+.+++ +++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 45799999999999 456789999876
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.9e-27 Score=215.06 Aligned_cols=148 Identities=24% Similarity=0.414 Sum_probs=131.2
Q ss_pred hhhHhhhhhcCCCcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHH
Q 015949 149 VSKLLDLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRN 228 (397)
Q Consensus 149 l~~l~~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e 228 (397)
+.+++..+|..++ -+++||-.++. .+++.+.|+++-..|+++++++.+.+|+|||+||++|++|+.+.+++ +
T Consensus 19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 4445555554433 47899999997 45677999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhcCCCcccc--------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEE
Q 015949 229 LMRLVLEKGHSRVPV--------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVV 292 (397)
Q Consensus 229 ~l~~i~~~g~SR~PV--------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVV 292 (397)
++..+.++.|||||| ||||..... ....++++ +||+.+|||+..+..+|++||.++.|||||+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999 888875433 34678888 9999999999999999999999999999999
Q ss_pred ecCCCcccccccc
Q 015949 293 RHQNDREQPHVPI 305 (397)
Q Consensus 293 DEyG~~~g~~~~~ 305 (397)
|||||+.|+|+-+
T Consensus 170 DEfGgVsGLVTIE 182 (293)
T COG4535 170 DEFGGVSGLVTIE 182 (293)
T ss_pred eccCCeeeeEEHH
Confidence 9999999999985
No 8
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.90 E-value=5.2e-24 Score=208.57 Aligned_cols=143 Identities=24% Similarity=0.415 Sum_probs=125.6
Q ss_pred hhhhcCCCcccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHH
Q 015949 154 DLLLGKGNEALFRRAELKTLVDLHGNEAGKGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLV 233 (397)
Q Consensus 154 ~~llg~~~~~~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i 233 (397)
.+++|.++ .|++||+.+++ ++.++|.++++|++|++|+|+|++++|+++||||.++++++.+++++ ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 34556553 48999999998 35567999999999999999999999999999999999999999998 999999
Q ss_pred HhcCCCcccc--------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 015949 234 LEKGHSRVPV--------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND 297 (397)
Q Consensus 234 ~~~g~SR~PV--------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~ 297 (397)
.+++|||||| ||++..... ....+.++ +|++++||+++++.++|+.||+++.|+|+|+||||+
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~ 174 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG 174 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999999 666643221 22347787 799999999999999999999999999999999999
Q ss_pred cccccccc
Q 015949 298 REQPHVPI 305 (397)
Q Consensus 298 ~~g~~~~~ 305 (397)
+.|+++..
T Consensus 175 viGiVTle 182 (292)
T PRK15094 175 VSGLVTIE 182 (292)
T ss_pred EEEEeEHH
Confidence 99999996
No 9
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.13 E-value=1.8e-10 Score=119.53 Aligned_cols=131 Identities=16% Similarity=0.226 Sum_probs=108.1
Q ss_pred ccccHHHHHHHHHhhccccccCCCCCH-----HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949 163 ALFRRAELKTLVDLHGNEAGKGGELTR-----DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG 237 (397)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~G~l~~-----~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g 237 (397)
..+|++|+..++... +..|.|.+ +|.+++++++++++. |++ ++++++.+.++. ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~~----gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMARE----GGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHhc----CCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 467999999998743 34688884 899999999988765 443 678999999998 9999999999
Q ss_pred CCcccc--hh-----hccc--------CCCCCCCcccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccc
Q 015949 238 HSRVPV--KN-----LLTI--------HPEDEVPVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQP 301 (397)
Q Consensus 238 ~SR~PV--kD-----ll~~--------~~~~~~~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~ 301 (397)
|+++|| .+ ++++ ......++.++|. ++++++++++++.++++.|++.+.++++|+|++|...|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGi 190 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGL 190 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEE
Confidence 999999 21 2221 1123457888854 289999999999999999999999999999999999999
Q ss_pred cccc
Q 015949 302 HVPI 305 (397)
Q Consensus 302 ~~~~ 305 (397)
++..
T Consensus 191 VT~~ 194 (450)
T TIGR01302 191 ITMK 194 (450)
T ss_pred EEhH
Confidence 9986
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.12 E-value=1.9e-10 Score=119.36 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=109.4
Q ss_pred cccHHHHHHHHHhhccccccC------CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHh--
Q 015949 164 LFRRAELKTLVDLHGNEAGKG------GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLE-- 235 (397)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~------G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~-- 235 (397)
.++.||+..+++. ..++ +.++++|++++++++++.+.+|+++|+| ++.+++.+.+++ ++++.+.+
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4678999999873 2233 4799999999999999999999999995 788999999998 99999875
Q ss_pred -cCCCc--ccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949 236 -KGHSR--VPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE 299 (397)
Q Consensus 236 -~g~SR--~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~ 299 (397)
.++++ +|| +|++.. .++.+++++|.++++.+++++++.++++.|++.+.+.++|||++|...
T Consensus 162 ~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--~~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lv 239 (449)
T TIGR00400 162 KTKEDIYTLYVTNESKHLKGVLSIRDLILA--KPEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLV 239 (449)
T ss_pred CCccceeEEEEECCCCeEEEEEEHHHHhcC--CCCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEE
Confidence 23433 343 455543 234578898655677899999999999999999999999999999999
Q ss_pred cccccc
Q 015949 300 QPHVPI 305 (397)
Q Consensus 300 g~~~~~ 305 (397)
|+++..
T Consensus 240 GiIt~~ 245 (449)
T TIGR00400 240 GIVTVD 245 (449)
T ss_pred EEEEHH
Confidence 999985
No 11
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.88 E-value=3e-09 Score=104.52 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=99.4
Q ss_pred HHHHHHhh-----ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC
Q 015949 192 TTIITGAL-----ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED 253 (397)
Q Consensus 192 ~~ii~~~l-----~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~ 253 (397)
..||.+++ .-+-.+|.|+|+|..+..+|..+++++ +..++..++||||||| ||++. ..+
T Consensus 171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~--~~~ 247 (432)
T COG4109 171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLD--KKP 247 (432)
T ss_pred HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceecccceEEEEEEehhhhc--CCC
Confidence 45666655 566789999999999999999999998 9999999999999999 66665 345
Q ss_pred CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+++..+|.|.|.+|.+.+++..+-+.|-+.+..|.+|+|+.....|+++..
T Consensus 248 ~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~ 299 (432)
T COG4109 248 STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQ 299 (432)
T ss_pred CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHH
Confidence 6789999888999999999999999999999999999999999999999985
No 12
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.78 E-value=2.6e-07 Score=89.22 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=109.2
Q ss_pred cccHHHHHHHHHhhccccccCCCCCHHHHHHHHH-------hhccccceecccceeCccEEEEeCCCChhHHHHHHHHhc
Q 015949 164 LFRRAELKTLVDLHGNEAGKGGELTRDETTIITG-------ALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEK 236 (397)
Q Consensus 164 ~~s~eEL~~lv~~~~~e~~~~G~l~~~E~~ii~~-------~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~ 236 (397)
.|+.++|...+.- -+|-=+|+.++-+-+-+ .-.+.+.+..|||++ +|++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 5788999888863 23344677776433222 225778899999998 899999999999 999999999
Q ss_pred CCCcccc-------------hhhcccC-C--------CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 237 GHSRVPV-------------KNLLTIH-P--------EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 237 g~SR~PV-------------kDll~~~-~--------~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
+..-+|| .|+++-. + -....++.+|..++..|.+++|..+++-.|..++.|..+|+|+
T Consensus 275 ~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~ 354 (382)
T COG3448 275 RIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA 354 (382)
T ss_pred CcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence 9999999 5565421 0 1345688886668999999999999999999999999999999
Q ss_pred CCCcccccccc
Q 015949 295 QNDREQPHVPI 305 (397)
Q Consensus 295 yG~~~g~~~~~ 305 (397)
.|...|++++.
T Consensus 355 ~g~lvGIvsQt 365 (382)
T COG3448 355 AGKLVGIVSQT 365 (382)
T ss_pred CCcEEEEeeHH
Confidence 99999999995
No 13
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.78 E-value=2.9e-08 Score=104.08 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949 163 ALFRRAELKTLVDLHGNEAGKGGELT-----RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG 237 (397)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~G~l~-----~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g 237 (397)
..+|++||...+.. ++.-|.|. +++.++++++.++ +++|.+ ++.+++.+.++. ++++.+.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 46899999999973 44567787 4788999988875 456664 777999999998 9999999999
Q ss_pred CCcccc-------------hhhcccCCCCCCCcccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccc
Q 015949 238 HSRVPV-------------KNLLTIHPEDEVPVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV 303 (397)
Q Consensus 238 ~SR~PV-------------kDll~~~~~~~~~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~ 303 (397)
++++|| +|++... ....++.++|. ++++++++++++.++++.|++.+.+.++|+|++|...|+++
T Consensus 118 ~~~lpVvd~~g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT 196 (486)
T PRK05567 118 ISGVPVVDENGKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLIT 196 (486)
T ss_pred CCEEEEEccCCEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Confidence 999999 4554322 23456888855 68899999999999999999999999999999999999998
Q ss_pred cc
Q 015949 304 PI 305 (397)
Q Consensus 304 ~~ 305 (397)
..
T Consensus 197 ~~ 198 (486)
T PRK05567 197 VK 198 (486)
T ss_pred hH
Confidence 75
No 14
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=2.6e-07 Score=75.49 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=75.5
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF 281 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f 281 (397)
++.+++.+.++. ++++.+.+++++++|| +|++.....+..++.+++.+++..+++++++.++++.|
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 81 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKM 81 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHHH
Confidence 466889999998 8999999999999999 45544322233457777668899999999999999999
Q ss_pred HhCCceEEEEEecCCCcccccccc
Q 015949 282 QKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 282 q~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.+.+.++|+|+.|...|+++..
T Consensus 82 ~~~~~~~~~Vv~~~~~~~G~v~~~ 105 (110)
T cd04605 82 ERHNISALPVVDAENRVIGIITSE 105 (110)
T ss_pred HHhCCCEEeEECCCCcEEEEEEHH
Confidence 999999999999999999998874
No 15
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=4.3e-07 Score=74.47 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=73.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC---CCCcccccccCCcEecCCCCHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED---EVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~---~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
++..++.+.+++ ++++.+.+++++++|| +|++...... +.++.+++.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEAL 80 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHH
Confidence 466889999998 8999999999999998 4554432211 2457777667889999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~ 106 (111)
T cd04626 81 DIMREKQIGRLPVVDD-NKLIGVVRTK 106 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEhH
Confidence 9999999999999999 9999998874
No 16
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=5.3e-07 Score=73.65 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=73.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-----CCCCcccccccCCcEecCCCCHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-----DEVPVKNVSIRRIPRVSETMPLYD 276 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-----~~~~v~~i~~r~~~~Vpe~~~l~~ 276 (397)
++.+++.+.++. ++++.+.+.+|+++|| +|++..... ...++.++|.+++.+++++.++.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 80 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDE 80 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence 467889999998 9999999999999999 455432211 134677886678899999999999
Q ss_pred HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~ 108 (113)
T cd04623 81 AMALMTERRFRHLPVVDG-GKLVGIVSIG 108 (113)
T ss_pred HHHHHHHcCCCEeEEEeC-CEEEEEEEHH
Confidence 999999999999999998 9999999874
No 17
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.1e-06 Score=73.45 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=71.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC-----CCCccc------ccccCCcEecC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED-----EVPVKN------VSIRRIPRVSE 270 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~-----~~~v~~------i~~r~~~~Vpe 270 (397)
++.+++.+.++. ++.+.+.+++++++|| +|++....++ ..++.+ .+.++++++++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP 80 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence 567899999998 9999999999999999 5665432111 111222 22345789999
Q ss_pred CCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 271 TMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 271 ~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~ 115 (120)
T cd04641 81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLS 115 (120)
T ss_pred CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHH
Confidence 99999999999999999999999999999999874
No 18
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.37 E-value=9.7e-07 Score=73.71 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=74.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC--------------CCCCcccccccCCcE
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE--------------DEVPVKNVSIRRIPR 267 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~--------------~~~~v~~i~~r~~~~ 267 (397)
++.+++.++++. ++.+.+.+++++++|| +|++..... ...++.+++.+++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence 567889999998 9999999999999999 444432211 123577776678999
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++++++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~ 119 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQT 119 (124)
T ss_pred eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhH
Confidence 99999999999999999999999999999999999874
No 19
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.1e-06 Score=71.85 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=75.5
Q ss_pred ccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHH
Q 015949 214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNE 280 (397)
Q Consensus 214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~ 280 (397)
.++.+++.+++++ ++.+.+.+.+++++|| +|++.. ....++.+++.+++.+++++.++.++++.
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~--~~~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK--DPDTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc--cccccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 4678899999998 9999999999999999 334332 13456888866788999999999999999
Q ss_pred HHhCCceEEEEEecCCCcccccccc
Q 015949 281 FQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 281 fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++.+.+.++|+|+.|...|+++..
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~G~it~~ 103 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISRQ 103 (108)
T ss_pred HHHcCCCeeeEEcCCCCEEEEEEHH
Confidence 9999999999999999999998874
No 20
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.34 E-value=4.2e-07 Score=86.27 Aligned_cols=108 Identities=14% Similarity=0.223 Sum_probs=93.8
Q ss_pred HHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC--CCCCCcccc
Q 015949 195 ITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP--EDEVPVKNV 260 (397)
Q Consensus 195 i~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~--~~~~~v~~i 260 (397)
+.++..+.+.+|+++|++ +..+++.++|+. |+.+.+.+.|...-|| .|+....+ .....++++
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~ 239 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDY 239 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHH
Confidence 345667889999999997 788999999998 9999999999999999 23333222 235779999
Q ss_pred cccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|.+.++.+.+++.++|+++.|.+.+....+|+|..|...|+++..
T Consensus 240 M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrT 284 (294)
T COG2524 240 MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRT 284 (294)
T ss_pred hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehH
Confidence 889999999999999999999999999999999999999999884
No 21
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.34 E-value=1.2e-06 Score=71.66 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=74.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNE 280 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~ 280 (397)
++..++.++++. ++.+.+.+.+++++|| +|++..... ...++.+++.+++++|+++.++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 80 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL 80 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence 467788999998 8999999999999998 455543222 1246777766788999999999999999
Q ss_pred HHhCCceEEEEEecCCCcccccccc
Q 015949 281 FQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 281 fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++.+.+..+|+|++|...|+++..
T Consensus 81 ~~~~~~~~~~V~~~~~~~~G~i~~~ 105 (110)
T cd04588 81 MNKHNVGRLIVTDDEGRPVGIITRT 105 (110)
T ss_pred HHhcCCCEEEEECCCCCEEEEEEhH
Confidence 9999999999999999999999874
No 22
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=1.8e-06 Score=71.28 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=75.1
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILN 279 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~ 279 (397)
++.+++.+.++. ++.+.+.+++++++|| +|+.....+ ...++.++|..+++.+++++++.++++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~ 80 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLR 80 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHH
Confidence 467889999998 8999999999999998 444443222 124688887778899999999999999
Q ss_pred HHHhCCceEEEEEecCCCcccccccc
Q 015949 280 EFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 280 ~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.|++.+.+..+|+|+.|...|+++..
T Consensus 81 ~m~~~~~~~lpVvd~~~~~~Giit~~ 106 (111)
T cd04603 81 IFRETEPPVVAVVDKEGKLVGTIYER 106 (111)
T ss_pred HHHHcCCCeEEEEcCCCeEEEEEEhH
Confidence 99999999999999889999999873
No 23
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.33 E-value=9e-07 Score=72.39 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=74.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++.+++.+++++ ++.+.+.+.+++++|| +|++....+ +..++.+++.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 456889999998 9999999999999999 455432211 1256778867889999999999999
Q ss_pred HHHHHhCCceEEEEEec-CCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRH-QNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDE-yG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+ +|...|+++..
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~ 109 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRS 109 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhH
Confidence 99999999999999998 99999999874
No 24
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.33 E-value=6.9e-07 Score=88.70 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=85.0
Q ss_pred ccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccC
Q 015949 202 SEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRR 264 (397)
Q Consensus 202 ~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~ 264 (397)
...+|+|+|++..++.+++.++++. ++.+.+.++++..+|| +|+...... ...++.++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence 6778999999766888999999998 9999999989888787 455432211 245788997788
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++++++.++++.|.+++.+..+|+|+ |...|+++..
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~ 318 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMH 318 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhH
Confidence 999999999999999999999999999885 7889999874
No 25
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=1.6e-06 Score=72.16 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=74.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC-------------CCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE-------------DEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~-------------~~~~v~~i~~r~~~~V 268 (397)
++.+++.++++. ++.+.+.+.+++++|| +|++..... ...++.+++.++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 80 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV 80 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence 456789999998 9999999999999999 344432111 2345777756788999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 117 (122)
T cd04803 81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRS 117 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHH
Confidence 9999999999999999999999999999999998873
No 26
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=1.2e-06 Score=73.14 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=73.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCC---------------CCCcccccccCC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPED---------------EVPVKNVSIRRI 265 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~---------------~~~v~~i~~r~~ 265 (397)
++..++.+.++. ++++.+.+.+++++|| +|++....+. ..++.+++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 467889999998 8999999999999999 3333221111 235777766779
Q ss_pred cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+++++++.++++.|++.+.+.++|+|++|...|+++..
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~ 120 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTER 120 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHH
Confidence 9999999999999999999999999999999999999874
No 27
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.30 E-value=1.7e-06 Score=70.57 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCC---CCcccccccCCcEecCCCCHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDE---VPVKNVSIRRIPRVSETMPLYDILN 279 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~---~~v~~i~~r~~~~Vpe~~~l~~lL~ 279 (397)
++..++.++++. ++.+.+.+.+++++|| +|++....... .++.+++.++++++++++++.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK 80 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence 456889999998 9999999999999999 45543322211 1456676788999999999999999
Q ss_pred HHHhCCceEEEEEecCCCcccccccc
Q 015949 280 EFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 280 ~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~V~~~~~~~~G~it~~ 106 (111)
T cd04612 81 RMAERDIGRLPVVDDSGRLVGIVSRS 106 (111)
T ss_pred HHHhCCCCeeeEEcCCCCEEEEEEHH
Confidence 99999999999999999999998873
No 28
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.30 E-value=1.8e-06 Score=70.35 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=75.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC---CCCCcccccccCCcEecCCCCHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE---DEVPVKNVSIRRIPRVSETMPLYDILN 279 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~---~~~~v~~i~~r~~~~Vpe~~~l~~lL~ 279 (397)
++.+++.+.++. ++.+.+.+.+++.+|| +|++..... ...++.+++.++++++++++++.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence 456889999998 8999999999999998 455543221 345677876678899999999999999
Q ss_pred HHHhCCceEEEEEecCCCcccccccc
Q 015949 280 EFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 280 ~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 106 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQT 106 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEhH
Confidence 99999999999999999999998873
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.6e-06 Score=71.86 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=71.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCC----C-------------cccccccC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEV----P-------------VKNVSIRR 264 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~----~-------------v~~i~~r~ 264 (397)
++.+++.+.++. ++++.+.+.+++++|| +|++....++.. + ..+.+.++
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence 577899999998 9999999999999999 455443211110 0 11334577
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++++++.++++.|.+.+.+.++|+|++|...|+++..
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~ 121 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLT 121 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHH
Confidence 89999999999999999999999999999999999999874
No 30
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=2.1e-06 Score=70.96 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=72.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC-C---C-CCCCcccccccCCcEecCCCCHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH-P---E-DEVPVKNVSIRRIPRVSETMPLY 275 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~-~---~-~~~~v~~i~~r~~~~Vpe~~~l~ 275 (397)
++.+++.+.++. ++++.+.+++++.+|| +|++... . . ...++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999998 8999999999999998 2333211 1 1 12467788667889999999999
Q ss_pred HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~ 109 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN-NELIGIISLT 109 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC-CEEEEEEEHH
Confidence 9999999999999999999 9999998873
No 31
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=2e-06 Score=70.41 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=74.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--CCCCCCcccccccCCcEecCCCCHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--PEDEVPVKNVSIRRIPRVSETMPLYDILN 279 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~ 279 (397)
+..+++.++++. ++.+.+.+.+++++|| +|++... .....++.+++.+++++++++.++.++++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~ 80 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLR 80 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHH
Confidence 456788999998 8999998899999999 3333321 11234688886788999999999999999
Q ss_pred HHHhCCceEEEEEecCCCcccccccc
Q 015949 280 EFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 280 ~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~G~it~~ 106 (111)
T cd04639 81 LMQQGGAPAVPVVDGSGRLVGLVTLE 106 (111)
T ss_pred HHHhcCCceeeEEcCCCCEEEEEEHH
Confidence 99999999999999989999999874
No 32
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=2.9e-06 Score=68.75 Aligned_cols=88 Identities=16% Similarity=0.256 Sum_probs=73.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQ 282 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq 282 (397)
++++++.+.+++ ++.+.+.+.+++++|| +|++.. ....++.+++..+++++++++++.++++.|+
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~ 79 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--DPDETVEEIMSKDLVVAVPEMDIMDAARVMF 79 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc--CccccHHHhCCCCCeEECCCCCHHHHHHHHH
Confidence 567889999998 8999998889999998 444432 1234577886677899999999999999999
Q ss_pred hCCceEEEEEecCCCcccccccc
Q 015949 283 KGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 283 ~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+.+.++|+|+.|...|+++..
T Consensus 80 ~~~~~~~~Vv~~~g~~~Gvi~~~ 102 (107)
T cd04610 80 RTGISKLPVVDENNNLVGIITNT 102 (107)
T ss_pred HhCCCeEeEECCCCeEEEEEEHH
Confidence 99999999999999999998874
No 33
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=3e-06 Score=70.48 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=73.8
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-------------CCCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-------------EDEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-------------~~~~~v~~i~~r~~~~V 268 (397)
++.+++.+.++. ++.+.+.+.+++++|| +|++.... ....++.+++.++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV 80 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence 567889999998 8999999999999998 45543210 02345666756778999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~ 117 (122)
T cd04635 81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRH 117 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhH
Confidence 9999999999999999999999999999999999873
No 34
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.22 E-value=2.8e-06 Score=69.45 Aligned_cols=90 Identities=34% Similarity=0.527 Sum_probs=72.9
Q ss_pred ccEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccCCCCC--CCcccccccCCcEecCCCCHHHH
Q 015949 214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIHPEDE--VPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~~~~~--~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
+++..++.++++. ++.+.+.+.+++.+|| +|++....++. .++.++ ++++++++++.++.++
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~ 78 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL 78 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence 3678899999998 9999999999999998 22322211111 346665 6889999999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+.|...|+++..
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 106 (111)
T cd04590 79 LEEMRKERSHMAIVVDEYGGTAGLVTLE 106 (111)
T ss_pred HHHHHhcCCcEEEEEECCCCEEEEeEHH
Confidence 9999999999999999999999999873
No 35
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.21 E-value=2.8e-06 Score=70.18 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=73.5
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHHH
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
+..++.++++. ++.+.+.+.+++++|| +|++....+ ...++.+++.++++++++++++.+++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence 45788999998 8999999999999999 455443211 12347777778899999999999999
Q ss_pred HHHHhCCceEEEEEecC--CCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQ--NDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEy--G~~~g~~~~~ 305 (397)
+.|++.+.+.++|+|++ |.+.|+++..
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~ 110 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTRE 110 (115)
T ss_pred HHHHHcCCceeeEEeCCCCCeEEEEEEhH
Confidence 99999999999999998 8899999874
No 36
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=2.9e-06 Score=72.14 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=72.3
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CC--------------------CCc
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DE--------------------VPV 257 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~--------------------~~v 257 (397)
++.+++.++++. ++++.+.+.+++++|| +|++..... .. .++
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 456889999998 9999999999999999 344432111 11 167
Q ss_pred ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+++.++++++++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~ 127 (132)
T cd04636 81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRG 127 (132)
T ss_pred HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHH
Confidence 7776677899999999999999999999999999999 9999999873
No 37
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=3.5e-06 Score=69.03 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=73.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcEecCCCCHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
+...++.++++. ++.+.+.+.+++++|| +|++.... ....++.++|.++++.+++++++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 80 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAA 80 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHH
Confidence 345788999998 8999999999999999 44443211 123467777678889999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|.+.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~~Vv~~~g~~~Gilt~~ 107 (112)
T cd04624 81 KLMRKNNIRHHLVVDKGGELVGVISIR 107 (112)
T ss_pred HHHHHcCccEEEEEcCCCcEEEEEEHH
Confidence 999999999999999999999999874
No 38
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.18 E-value=4.9e-06 Score=67.64 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=70.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF 281 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f 281 (397)
++++++.+.++. ++++.+.+.+++++|| ++++.. ....++.+++.+++.++++++++.++++.|
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~--~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 78 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN--PEEEQLALLMTRDPPTVSPDDDVKEAAKLM 78 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc--cccchHHHHhcCCCceECCCCCHHHHHHHH
Confidence 578899999998 8999999999999999 233221 122456666567889999999999999999
Q ss_pred HhCCceEEEEEecCCCcccccccc
Q 015949 282 QKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 282 q~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.+.+.++|+|+ |...|+++..
T Consensus 79 ~~~~~~~~~Vvd~-~~~~G~it~~ 101 (106)
T cd04638 79 VENNIRRVPVVDD-GKLVGIVTVA 101 (106)
T ss_pred HHcCCCEEEEEEC-CEEEEEEEHH
Confidence 9999999999995 8888888863
No 39
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.18 E-value=2.3e-06 Score=84.71 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=85.6
Q ss_pred cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCc
Q 015949 203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIP 266 (397)
Q Consensus 203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~ 266 (397)
..+|+++|++..++.+++.+.++. ++.+.+.+++.+.+|| +|+..... ....++.++|.++++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~ 274 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGT 274 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCE
Confidence 468999999864588999999998 8999999999999998 34443211 234568888777888
Q ss_pred EecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 267 RVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 267 ~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus 275 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~ 313 (321)
T PRK11543 275 TLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQ 313 (321)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 999999999999999999999999999989999999874
No 40
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.17 E-value=3.8e-06 Score=69.37 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=73.5
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V 268 (397)
++.+++.+.+++ ++++.+.+.+++++|| +|++..... ...++.+++.++++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 456889999998 9999999999999999 344432111 1244667766788999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~ 117 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITES 117 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHH
Confidence 9999999999999999999999999999999999874
No 41
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.16 E-value=5.3e-06 Score=66.98 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=72.3
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQ 282 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq 282 (397)
++..++.++++. ++++.+.+.+++++|| +|++... ...++.+++..+++++++++++.++++.|.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~ 78 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--PNRLVADAMTREVVTISPEASLLEAKRLME 78 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc--ccCCHHHHccCCCEEECCCCCHHHHHHHHH
Confidence 456789999998 8999999899999998 3444322 234577776678889999999999999999
Q ss_pred hCCceEEEEEecCCCcccccccc
Q 015949 283 KGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 283 ~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+...++|+|+ |...|+++..
T Consensus 79 ~~~~~~~~Vv~~-~~~~G~it~~ 100 (105)
T cd04599 79 EKKIERLPVLRE-RKLVGIITKG 100 (105)
T ss_pred HcCCCEeeEEEC-CEEEEEEEHH
Confidence 999999999999 9999999874
No 42
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.15 E-value=4.5e-06 Score=71.99 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=73.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC---------------------------CC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE---------------------------DE 254 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~---------------------------~~ 254 (397)
++.+++.++++. ++++.+.+.+++++|| +|++..... ..
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 467889999998 9999999999999999 455432211 13
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.+++.++++.|++++++.++++.|++++.+.++|+|+ |...|+++..
T Consensus 81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~ 130 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKT 130 (135)
T ss_pred ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHH
Confidence 4677886667889999999999999999999999999998 9999999873
No 43
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.15 E-value=5.8e-06 Score=67.11 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=74.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF 281 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f 281 (397)
++..++.++++. ++.+.+.+.+++++|| +|++... ....++.++|.++++++++++++.++++.|
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~ 80 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY-KEAKSLEDIMLEDVFTVQPDASLRDVLGLV 80 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh-hcCCcHhHhhcCCceEECCCCcHHHHHHHH
Confidence 556789999998 8999999999999999 3444321 123567777667889999999999999999
Q ss_pred HhCCceEEEEEecCCCcccccccc
Q 015949 282 QKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 282 q~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+..+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~vv~~~g~~~Gvit~~ 104 (109)
T cd04583 81 LKRGPKYVPVVDEDGKLVGLITRS 104 (109)
T ss_pred HHcCCceeeEECCCCeEEEEEehH
Confidence 999999999999999999999874
No 44
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=5.2e-06 Score=68.06 Aligned_cols=89 Identities=9% Similarity=0.087 Sum_probs=73.3
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--CC--CCCCcccccccCCcEecCCCCHHHHH
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--PE--DEVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
...++.++++. ++++.+.+.+++++|| +|++... .+ ...++.++|.+++++++++.++.+++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 35778999998 8999999999999999 4554321 11 23567787667899999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++.+.+..+|+|+.|...|+++..
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~ 108 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTED 108 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHH
Confidence 999999999999999999999998874
No 45
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.12 E-value=3.5e-06 Score=81.08 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=81.4
Q ss_pred ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcE
Q 015949 204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPR 267 (397)
Q Consensus 204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~ 267 (397)
.+|+++|.+. ++..++.++++. ++++.+.+.+++.+|| +|++.... ....++.++|.++++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~~ 232 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPKT 232 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCeE
Confidence 6899999875 277899999998 8999999999999998 44443321 1346788887788889
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPH 302 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~ 302 (397)
|+++.++.++++.|.+.+.+..+|+|+.|...|++
T Consensus 233 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 233 FKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred ECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 99999999999999999999999999989888875
No 46
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=5.5e-06 Score=68.27 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=70.8
Q ss_pred cEEEEeCCCChhHHHHHHHHhcC-CCcccc-------------hhhcccCCC--CCCCcccccc--cCCcEecCCCCHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKG-HSRVPV-------------KNLLTIHPE--DEVPVKNVSI--RRIPRVSETMPLYD 276 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g-~SR~PV-------------kDll~~~~~--~~~~v~~i~~--r~~~~Vpe~~~l~~ 276 (397)
++.+++.+.++. ++.+.+.+.+ ++++|| +|++....+ ...++.++|. .+++.+++++++.+
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAE 80 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHH
Confidence 456889999998 8999887665 889998 455443221 2346777732 23568999999999
Q ss_pred HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~ 109 (114)
T cd04801 81 VLKLLEEQGLDELAVVEDSGQVIGLITEA 109 (114)
T ss_pred HHHHHHHCCCCeeEEEcCCCcEEEEEecc
Confidence 99999999999999999999999999874
No 47
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.10 E-value=5.6e-06 Score=86.70 Aligned_cols=100 Identities=11% Similarity=0.129 Sum_probs=85.9
Q ss_pred cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcE
Q 015949 201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPR 267 (397)
Q Consensus 201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~ 267 (397)
++..+++++|++ +.++++.++++. ++.+.+.+++++.+|| +|+... ....++.++|.+++++
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--~~~~~V~diMt~~~it 160 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--DRFTQVRDVMSTDLVT 160 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC--ccCCCHHHhccCCceE
Confidence 456678899985 677999999998 9999999999999999 344332 2335788998889999
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++++++.++++.|.+++.+..+|+|+.|...|+++..
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~ 198 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRT 198 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHH
Confidence 99999999999999999999999999999999999985
No 48
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.09 E-value=9.5e-06 Score=66.03 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=68.9
Q ss_pred EEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCC
Q 015949 218 AIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGH 285 (397)
Q Consensus 218 ~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~ 285 (397)
+++.+.++. ++++.+.+.+++++|| +|++.. ...++.++|.+++++|+++.++.++++.|++.+
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 80 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENA---TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNK 80 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhh---cccchhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence 678899998 8999999999999999 333322 123466776677899999999999999999999
Q ss_pred ceEEEEEecCCCcccccccc
Q 015949 286 SHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 286 ~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~Vv~~-~~~iGvit~~ 99 (104)
T cd04594 81 TRWCPVVDD-GKFKGIVTLD 99 (104)
T ss_pred cceEEEEEC-CEEEEEEEHH
Confidence 999999985 8999998874
No 49
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.09 E-value=7.2e-06 Score=67.44 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=71.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----C-----CCCcccccccCCcEecCCC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----D-----EVPVKNVSIRRIPRVSETM 272 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~-----~~~v~~i~~r~~~~Vpe~~ 272 (397)
++.+++.++++. ++.+.+.+.+++++|| +|++....+ + ..++.++|.++++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 80 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence 577899999998 9999999999999999 454432211 0 3467777666789999999
Q ss_pred CHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 273 PLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 273 ~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.++++.|.+.+ ..+|+|+.|...|+++..
T Consensus 81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~ 111 (116)
T cd04643 81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRR 111 (116)
T ss_pred CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHH
Confidence 9999999998754 578999999999999874
No 50
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.09 E-value=9.7e-06 Score=65.89 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=71.1
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecC-CCCHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSE-TMPLYDILNE 280 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe-~~~l~~lL~~ 280 (397)
+...++.+.++. ++.+.+.+.+++++|| +|++... ....++.+++.+++.++.. ++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~ 80 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET-DLDKPVSEVMTPENLLTTVEGTSLEEALEL 80 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-cCCCCHHHhcccCceEEecCCCCHHHHHHH
Confidence 456889999998 8999999999999999 2333221 2245677775455666666 9999999999
Q ss_pred HHhCCceEEEEEecCCCcccccccc
Q 015949 281 FQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 281 fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~Vv~~~~~~~Gvi~~~ 105 (110)
T cd04601 81 LHEHKIEKLPVVDDEGKLKGLITVK 105 (110)
T ss_pred HHHhCCCeeeEEcCCCCEEEEEEhh
Confidence 9999999999999999999999874
No 51
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.08 E-value=7.7e-06 Score=66.96 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=72.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC----CCCCCcccccccCCcEecCCCCHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP----EDEVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~----~~~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
+...++.+.++. ++++.+.+.+++++|| +|++.... ....++.++|.++++.|++++++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 345788999998 8999999999999998 34443211 123567788667889999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~ 106 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQT 106 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhH
Confidence 9999999999999997 8889998874
No 52
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.07 E-value=9.9e-06 Score=67.04 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=74.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-----CCCCCCcccccccCCcEecCCCCHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-----PEDEVPVKNVSIRRIPRVSETMPLYD 276 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-----~~~~~~v~~i~~r~~~~Vpe~~~l~~ 276 (397)
++..++.++++. ++.+.+.++++..+|| +|++... .....++.+++.++++.++++.++.+
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD 80 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence 356788999998 9999999999999998 4544321 11235678886788899999999999
Q ss_pred HHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 277 ILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 277 lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.|.+.+.+..+|+|+.|...|+++..
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEhH
Confidence 99999999999999999989999998874
No 53
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.07 E-value=1.1e-05 Score=65.83 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=73.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhccc-C-C--CCCCCcccccccCCcEecCCCCHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTI-H-P--EDEVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~-~-~--~~~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
++.+++.+.++. ++.+.+.+.+++++|| +|++.. . . ....++.+++.++++++++++++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 466789999998 8999999999999999 454431 1 1 123567777678899999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~ 106 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISAT 106 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHH
Confidence 9999999999999998 9999998874
No 54
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=6.7e-06 Score=67.39 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC------CCCCCcccccccCCcEecCCCCHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP------EDEVPVKNVSIRRIPRVSETMPLY 275 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~------~~~~~v~~i~~r~~~~Vpe~~~l~ 275 (397)
++..++.+.++. ++.+.+.+.+++++|| +|++.... ....++.+++.++++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV 80 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence 456789999998 8999998889999998 44443211 124567787667889999999999
Q ss_pred HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~ 109 (114)
T cd04629 81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRR 109 (114)
T ss_pred HHHHHHHHhCCCccCEEEC-CEEEEEEEHH
Confidence 9999999999998999999 9999998873
No 55
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.05 E-value=4.6e-06 Score=89.27 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=83.8
Q ss_pred ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC--C-C-CCCCcccccc
Q 015949 200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH--P-E-DEVPVKNVSI 262 (397)
Q Consensus 200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~--~-~-~~~~v~~i~~ 262 (397)
.++..+|+|+|+|. ...++.+++++ ++.+.+.+++++++|| +|+.+.. . + +..++.++|.
T Consensus 443 ~L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 443 RLRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HHhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 36778999999974 45789999998 8999999999999999 4554421 1 1 2356788877
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCC--Ccccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQN--DREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG--~~~g~~~~~ 305 (397)
++++.+++++++.++++.|++.+.+..+|+|+.| ...|+++..
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~ 564 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT 564 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence 7889999999999999999999999889999874 588988874
No 56
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.05 E-value=1.3e-05 Score=65.00 Aligned_cols=87 Identities=10% Similarity=-0.029 Sum_probs=71.1
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEF 281 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~f 281 (397)
++..++.+.++. ++++.+.+.+++++|| +|++... ..++.+++.+.+..+++++++.++++.|
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS---GGCCGDHAEPFKVTVSVDDDLRIVLSRM 77 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc---ccchhhhcccCCEEECCCCCHHHHHHHH
Confidence 456788999998 8999999999999998 3444321 2346777545667899999999999999
Q ss_pred HhCCceEEEEEecCCCcccccccc
Q 015949 282 QKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 282 q~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+.+.+.++|+|+.|...|+++..
T Consensus 78 ~~~~~~~~~Vv~~~~~~~Gvi~~~ 101 (106)
T cd04582 78 FAHDMSWLPCVDEDGRYVGEVTQR 101 (106)
T ss_pred HHCCCCeeeEECCCCcEEEEEEHH
Confidence 999999999999999999998874
No 57
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.05 E-value=7.9e-06 Score=66.88 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=72.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcc-cC-C--CCC-CCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLT-IH-P--EDE-VPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~-~~-~--~~~-~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++..++.+.+++ ++.+.+.+.+++++|| +|++. .. . ... .++.+++.++++.++++.++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~ 80 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA 80 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence 466788999998 8999999999999998 45542 11 1 111 56778866778899999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|...+.+..+|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEHH
Confidence 9999999998889999989999998873
No 58
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.05 E-value=9.3e-06 Score=66.88 Aligned_cols=90 Identities=13% Similarity=0.252 Sum_probs=71.4
Q ss_pred cEEEEeCCCChhHHHHHHHHhcC-CCcccc------------hhhcccCCC----CCCCcccccccCCcEecCC--CCHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKG-HSRVPV------------KNLLTIHPE----DEVPVKNVSIRRIPRVSET--MPLY 275 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g-~SR~PV------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~--~~l~ 275 (397)
++..++.+.++. ++++.+.+++ +..+|| +|++....+ +..++.+++.++++.++++ .++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 345788999998 8999998888 677887 455442211 1346778866778889887 7999
Q ss_pred HHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 276 DILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 276 ~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~ 110 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAE 110 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhH
Confidence 999999999999999999999999999874
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.04 E-value=1e-05 Score=66.15 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=72.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--CCCCcccccccCCcEecCCCCHHHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--DEVPVKNVSIRRIPRVSETMPLYDILNE 280 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~ 280 (397)
+..+++.+.++. ++.+.+.+.+++++|| +|++..... ...++.++|.++++.+++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence 466889999998 8999999899999998 343322111 2456778867889999999999999999
Q ss_pred HHhCCceEEEEEecCCCcccccccc
Q 015949 281 FQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 281 fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++.+.+.++|+| .|...|+++..
T Consensus 82 ~~~~~~~~~~V~~-~~~~~Gvvt~~ 105 (110)
T cd04595 82 MVEHDIGRVPVVE-DGRLVGIVTRT 105 (110)
T ss_pred HHHcCCCeeEEEe-CCEEEEEEEhH
Confidence 9999999999999 79999999874
No 60
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=8.3e-06 Score=69.61 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=72.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC--------------------------CCCC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP--------------------------EDEV 255 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~--------------------------~~~~ 255 (397)
++.+++.++++. ++++.+.++++.++|| +|++.... ....
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 567889999998 9999999999999999 34432110 1234
Q ss_pred CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.+++.++++.+++++++.++++.|++.+.+..+|+| +|...|+++..
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~ 130 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRA 130 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhH
Confidence 57777556789999999999999999999999999999 89999999874
No 61
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=1.2e-05 Score=66.21 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=72.2
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC---CCCCCcccccccCCcEecCCCCHHHHHH
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP---EDEVPVKNVSIRRIPRVSETMPLYDILN 279 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~---~~~~~v~~i~~r~~~~Vpe~~~l~~lL~ 279 (397)
.++++.++++. ++.+.+.+.++..+|| +|++.... ....++.+++..++..|++++++.++++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA 82 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence 45788999998 8999998888888988 44443211 1234677885566888999999999999
Q ss_pred HHHhCCceEEEEEecCCCcccccccc
Q 015949 280 EFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 280 ~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.|++.+.+.++|+|+.|...|+++..
T Consensus 83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~ 108 (113)
T cd04607 83 LMRERSIRHLPILDEEGRVVGLATLD 108 (113)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEhH
Confidence 99999999999999999999999874
No 62
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.01 E-value=2.1e-05 Score=64.14 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=67.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-h----hhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEE
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-K----NLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMA 289 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-k----Dll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmA 289 (397)
++++++.++++. ++.+.+.+++++.+|| . .+.+.... ..+... +. +..+.+++++.++++.|.+++.+..
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~--~Dl~~~-~~-~~~v~~~~~l~~a~~~m~~~~~~~l 76 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTI--TDFILI-LR-LVSIHPERSLFDAALLLLKNKIHRL 76 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEH--HHHhhh-ee-eEEeCCCCcHHHHHHHHHHCCCCEe
Confidence 578999999998 9999999999999999 1 13332111 011111 11 6789999999999999999999999
Q ss_pred EEEecC-CCccccccc
Q 015949 290 VVVRHQ-NDREQPHVP 304 (397)
Q Consensus 290 iVVDEy-G~~~g~~~~ 304 (397)
+|+|+. |...|+++.
T Consensus 77 pVvd~~~~~~~giit~ 92 (98)
T cd04618 77 PVIDPSTGTGLYILTS 92 (98)
T ss_pred eEEECCCCCceEEeeh
Confidence 999998 889999887
No 63
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.01 E-value=9.7e-06 Score=67.94 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=69.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc--------------hhhcccC-CC-CC-----------CCcccccccCCcE
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--------------KNLLTIH-PE-DE-----------VPVKNVSIRRIPR 267 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--------------kDll~~~-~~-~~-----------~~v~~i~~r~~~~ 267 (397)
++..++.++++. ++++.+.+.+++++|| +|++... .. .. ....+++.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467889999998 8999999999999998 2332211 00 00 0111244577889
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.++++.|.+.+.+.++|+|++|...|+++..
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHH
Confidence 99999999999999999999999999999999999874
No 64
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.00 E-value=1.4e-05 Score=65.33 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=72.6
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCC----CCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPE----DEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~----~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++..++.++++. ++.+.+.+.+++++|| ++++..... ...++.++|.++++++++++++.++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 81 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEA 81 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence 455788999998 8999998889999999 333332111 1246888866788999999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+.|...|+++..
T Consensus 82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~ 109 (114)
T cd04604 82 LELMEENKITALPVVDDNGRPVGVLHIH 109 (114)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEEEEHH
Confidence 9999999999999999889999998863
No 65
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.00 E-value=1.3e-05 Score=66.45 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=71.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-------------CCCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-------------EDEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-------------~~~~~v~~i~~r~~~~V 268 (397)
++.+++.++++. ++.+.+.+.+++++|| +|++.... ....++.++|.++++++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i 80 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV 80 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence 456889999998 8999999999999999 34433211 11345677766788999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~ 116 (121)
T cd04584 81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITET 116 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHH
Confidence 99999999999999999999999998 9999998873
No 66
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.00 E-value=6.7e-06 Score=68.49 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V 268 (397)
++..++.++++. ++.+.+.+.+++++|| +|++..... ...++.+++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 467889999998 8999999999999999 344321100 1235677766789999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~ 117 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWK 117 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHH
Confidence 9999999999999999999999999999999998873
No 67
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.00 E-value=2.1e-05 Score=64.34 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=73.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcc-cCC---C-CCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLT-IHP---E-DEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~-~~~---~-~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++.+++.++++. ++++.+.+.+++.+|| +|++. ... . ...++.++|.+.+..+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence 466889999998 9999999999999998 44431 111 1 1224778866788999999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~ 108 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLG 108 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHH
Confidence 9999999999999999999999998874
No 68
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.96 E-value=1.8e-05 Score=63.49 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=71.7
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCC-C---CCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPED-E---VPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~-~---~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++..++.+.+++ ++.+.+.+.+++++|| +|++...... . ..+.+++.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 466889999998 9999999999999999 3333322111 1 11445656788999999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+.|...|+++..
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~ 108 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTRS 108 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHH
Confidence 9999999999999999999999998763
No 69
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.94 E-value=1.9e-05 Score=64.03 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=69.4
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCC----CCCcccccccCCcEecCCCCHHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPED----EVPVKNVSIRRIPRVSETMPLYDIL 278 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~----~~~v~~i~~r~~~~Vpe~~~l~~lL 278 (397)
++.+++.++++. ++.+.+.+.+++++|| +|+.....+. ..++.+++.+++..+++++++.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 456789999998 9999999999999998 4544432111 2457777666788999999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++ ..+ ++|+|+.|...|+++..
T Consensus 81 ~~~~~-~~~-~~vv~~~~~~~Gvvt~~ 105 (110)
T cd04609 81 ELLDR-GNV-AVVVDEGGKFVGIITRA 105 (110)
T ss_pred HHHHh-CCc-eeEEecCCeEEEEEeHH
Confidence 99999 444 68889999999999873
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.94 E-value=1.6e-05 Score=66.00 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=72.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC--------------CCCCcccccccCCcEe
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE--------------DEVPVKNVSIRRIPRV 268 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~--------------~~~~v~~i~~r~~~~V 268 (397)
++..++.++++. ++.+.+.+.+++++|| +|++..... ...++.++|.++++++
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 456889999998 9999999999999999 344332110 1345666766788999
Q ss_pred cCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 269 SETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 269 pe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~ 116 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRT 116 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHH
Confidence 99999999999999999999999999 9999998873
No 71
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.92 E-value=2.6e-05 Score=63.77 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=71.5
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccC--C---CCCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIH--P---EDEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~--~---~~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++..++.+.++. ++++.+.+++++++|| +|++... . ....++.+++.++++++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence 456789999998 8999999999999998 4554321 1 12345777755678899999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+.++|+|+. ...|+++..
T Consensus 81 ~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~ 107 (112)
T cd04802 81 AKLMAKHGIKRLPVVDDD-ELVGIVTTT 107 (112)
T ss_pred HHHHHHcCCCeeEEeeCC-EEEEEEEhh
Confidence 999999999999999985 788888874
No 72
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=1.8e-05 Score=64.68 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=67.6
Q ss_pred EeCCCChhHHHHHHHHhcCC-----Ccccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHH
Q 015949 219 IDVSFKLDRNLMRLVLEKGH-----SRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNE 280 (397)
Q Consensus 219 L~~~~tl~~e~l~~i~~~g~-----SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~ 280 (397)
++.+.++. ++++.+.++++ ..+|| +|++.. ..+.++.+++.++++.+++++++.++++.
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~--~~~~~v~~~~~~~~~~i~~~~~~~~~~~~ 78 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA--DPDTPVSDIMDTDVISVSADDDQEEVARL 78 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--CCcchHHHHhCCCCeEEcCCCCHHHHHHH
Confidence 46788897 89999888884 56787 344432 13456788755678899999999999999
Q ss_pred HHhCCceEEEEEecCCCcccccccc
Q 015949 281 FQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 281 fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+..+.+.++|+|++|...|+++..
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~Gvit~~ 103 (109)
T cd04606 79 FEKYDLLALPVVDEEGRLVGIITVD 103 (109)
T ss_pred HHHcCCceeeeECCCCcEEEEEEhH
Confidence 9999999999999999999999874
No 73
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.91 E-value=2.3e-05 Score=66.02 Aligned_cols=90 Identities=14% Similarity=0.208 Sum_probs=71.2
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccC-C----------------CCCCCcccccccC
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIH-P----------------EDEVPVKNVSIRR 264 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~-~----------------~~~~~v~~i~~r~ 264 (397)
++.+++.+.++. ++++.+.+.+++.+|| +|++... . ....++.+++.++
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 466889999998 9999999999999999 3443221 0 0123577776678
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEe--cCCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVR--HQNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD--EyG~~~g~~~~~ 305 (397)
++++++++++.++++.|.+.+.+.++|++ +-|...|+++..
T Consensus 81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~ 123 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123 (128)
T ss_pred CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhH
Confidence 89999999999999999999988888873 458899999874
No 74
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.90 E-value=2.5e-05 Score=65.04 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=71.0
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC-C---CCCCccccccc--CCcEecCCCCHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP-E---DEVPVKNVSIR--RIPRVSETMPLY 275 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~-~---~~~~v~~i~~r--~~~~Vpe~~~l~ 275 (397)
+..+++.+.++. ++.+.+.+++.+.+|| +|++.... + ...++.++|.+ +++++++++++.
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 456899999998 8999998899999998 33333211 1 13446667443 688999999999
Q ss_pred HHHHHHHhCCceEEEEEecC---CCcccccccc
Q 015949 276 DILNEFQKGHSHMAVVVRHQ---NDREQPHVPI 305 (397)
Q Consensus 276 ~lL~~fq~~~~hmAiVVDEy---G~~~g~~~~~ 305 (397)
++++.|++.+.+..+|+|+. |...|+++..
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence 99999999999999999987 6789999874
No 75
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.85 E-value=1.8e-05 Score=82.09 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=78.8
Q ss_pred cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCC----CCCCCccccccc
Q 015949 201 LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHP----EDEVPVKNVSIR 263 (397)
Q Consensus 201 l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~----~~~~~v~~i~~r 263 (397)
|+..+|+++|.+ ++.+++.++++. ++++.+.+.+++++|| +|++.... ....++.++|.+
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~ 408 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK 408 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence 788999999986 577999999998 9999999999999999 44443211 123468888667
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++|++++++.++++.|++.+ .++|+| .|...|+++..
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~--~~vV~~-~g~liGvvt~~ 447 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNS--SAIVTE-EGKPIGVVTKI 447 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCC--eeEEEE-CCEEEEEEEHH
Confidence 7789999999999999998864 455544 58899999874
No 76
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.83 E-value=3.2e-05 Score=63.26 Aligned_cols=89 Identities=9% Similarity=0.029 Sum_probs=71.1
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCC-----CCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPE-----DEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~-----~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++..++.+.++. ++.+.+.+.+++++|| +|++....+ ...++.+++.++++.+++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 567889999998 8999998888888888 455532111 2346788855667899999999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+..+|+|+ |...|+++..
T Consensus 81 ~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~ 107 (112)
T cd04625 81 RRLMVERHLRYLPVLDG-GTLLGVISFH 107 (112)
T ss_pred HHHHHHcCCCeeeEEEC-CEEEEEEEHH
Confidence 99999999999999996 8889998873
No 77
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=3.6e-05 Score=66.72 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=72.1
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCC--C----------------------------
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHP--E---------------------------- 252 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~--~---------------------------- 252 (397)
++++++.+.++. ++.+.+.+.+++.+|| +|++.... .
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 467889999998 8999999999999998 45443210 0
Q ss_pred ------CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 253 ------DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 253 ------~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
...++.+++.++++.+++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 123456666678999999999999999999999999999998 9999998873
No 78
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.80 E-value=6e-05 Score=79.54 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=95.7
Q ss_pred ccccHHHHHHHHHhhccccc-cCCCCCH-HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCc
Q 015949 163 ALFRRAELKTLVDLHGNEAG-KGGELTR-DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSR 240 (397)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~-~~G~l~~-~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR 240 (397)
...|+.++-..+...|-=+- ..+ .+. +....++.+.+. +..|++ +.++++.++++. ++++.+.+++++.
T Consensus 63 ~~vt~~~lA~Ama~aGGiGfI~~~-as~E~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~ 133 (505)
T PLN02274 63 DTVTESDMAIAMAALGGIGIVHYN-NTAEEQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSS 133 (505)
T ss_pred cccchHHHHHHHHhCCCeEEEcCC-CCHHHHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCce
Confidence 35677777666653210000 001 233 335667777754 233664 677999999998 9999999999999
Q ss_pred ccc-hh------hccc--------CCCCCCCcccccccC--CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccc
Q 015949 241 VPV-KN------LLTI--------HPEDEVPVKNVSIRR--IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHV 303 (397)
Q Consensus 241 ~PV-kD------ll~~--------~~~~~~~v~~i~~r~--~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~ 303 (397)
+|| .+ ++++ ......++.++|.++ ++.++++.++.++++.|++.+.+..+|+|+.|...|+++
T Consensus 134 lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT 213 (505)
T PLN02274 134 VCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT 213 (505)
T ss_pred EEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 998 21 2221 113356788886545 679999999999999999999999999999999999998
Q ss_pred cc
Q 015949 304 PI 305 (397)
Q Consensus 304 ~~ 305 (397)
..
T Consensus 214 r~ 215 (505)
T PLN02274 214 RT 215 (505)
T ss_pred HH
Confidence 85
No 79
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.80 E-value=3.9e-05 Score=80.76 Aligned_cols=131 Identities=11% Similarity=0.186 Sum_probs=95.1
Q ss_pred ccccHHHHHHHHHhhccccccCCCC----CH-HHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcC
Q 015949 163 ALFRRAELKTLVDLHGNEAGKGGEL----TR-DETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKG 237 (397)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~~~G~l----~~-~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g 237 (397)
+.+|+.++-.-+..+| --|.| +. ++.+.+..+-+ +++.|++ +.++++.++++. ++++.+.+++
T Consensus 59 ~~vt~~~ma~a~a~~G----glGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~ 126 (495)
T PTZ00314 59 DTVTEHKMAIAMALMG----GIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKG 126 (495)
T ss_pred cccccHHHHHHHHHCC----CeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence 3567777766665322 11222 22 23455555543 4456764 557999999998 9999999999
Q ss_pred CCcccc--h-----hhccc--------CCCCCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccc
Q 015949 238 HSRVPV--K-----NLLTI--------HPEDEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQ 300 (397)
Q Consensus 238 ~SR~PV--k-----Dll~~--------~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g 300 (397)
++++|| + .++++ ......++.++|.+ +++.+++++++.++++.|++.+.+..+|+|+.|...|
T Consensus 127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG 206 (495)
T PTZ00314 127 FSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA 206 (495)
T ss_pred CcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 999998 2 12221 12234678888654 6889999999999999999999999999999999999
Q ss_pred ccccc
Q 015949 301 PHVPI 305 (397)
Q Consensus 301 ~~~~~ 305 (397)
+++..
T Consensus 207 IIT~~ 211 (495)
T PTZ00314 207 LVSRS 211 (495)
T ss_pred EEEeh
Confidence 99986
No 80
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.80 E-value=4.5e-05 Score=62.99 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=70.3
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc--h-----hhcccC--------CCCCCCcccccccCCcEecC--CCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K-----NLLTIH--------PEDEVPVKNVSIRRIPRVSE--TMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k-----Dll~~~--------~~~~~~v~~i~~r~~~~Vpe--~~~l~~l 277 (397)
+...++.++++. ++++.+.+.+++++|| + .+++.. .....++.++|.+++..+.. ++++.++
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 81 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTPREVLVVAPTGITLEEA 81 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCCCceEEECCCCCCHHHH
Confidence 456888999998 8999998889999998 2 123211 11234577775555666755 9999999
Q ss_pred HHHHHhCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.|++.+.+..+|+|+.|...|+++..
T Consensus 82 l~~~~~~~~~~~pVv~~~~~~~Gvit~~ 109 (114)
T cd04602 82 NEILRESKKGKLPIVNDDGELVALVTRS 109 (114)
T ss_pred HHHHHhcCCCceeEECCCCeEEEEEEHH
Confidence 9999999999999999999999999874
No 81
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.79 E-value=5e-05 Score=62.36 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=68.5
Q ss_pred ccEEEEeCCCChhHHHHHHHHhcCCCcccc--h---h--hcccCCCCCC-C-cccccccCCcEecCCCCHHHHHHHHHhC
Q 015949 214 SETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K---N--LLTIHPEDEV-P-VKNVSIRRIPRVSETMPLYDILNEFQKG 284 (397)
Q Consensus 214 ~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k---D--ll~~~~~~~~-~-v~~i~~r~~~~Vpe~~~l~~lL~~fq~~ 284 (397)
++...++.+.+++ ++.+.+.+.+++++|| . + +++.....+. . ..++|.++++++++++++.++++.|++.
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~~m~~~~~~v~~~~~l~~~~~~~~~~ 80 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKNYIDPSPFTVSPRTSLEKVHQLFRKL 80 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHHhccCCCceECCCCcHHHHHHHHHHc
Confidence 4677899999998 8999999999999999 2 1 2222110000 0 0015567888999999999999999999
Q ss_pred CceEEEEEecCCCcccccccc
Q 015949 285 HSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 285 ~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+.++|++ .|...|+++..
T Consensus 81 ~~~~~pVv~-~~~~~Gvvt~~ 100 (105)
T cd04591 81 GLRHLLVVD-EGRLVGIITRK 100 (105)
T ss_pred CCCEEEEEE-CCeEEEEEEhh
Confidence 999999985 68899999874
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.79 E-value=4.3e-05 Score=79.99 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=85.6
Q ss_pred ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCCCCCcccccccCCcE
Q 015949 200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPEDEVPVKNVSIRRIPR 267 (397)
Q Consensus 200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~~~~v~~i~~r~~~~ 267 (397)
.++..+++++|++ +.++++.++++. ++.+.+.+.+++.+|| +|+... ....++.++|.+++++
T Consensus 84 ~v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~--~~~~~V~dIMt~~lit 158 (475)
T TIGR01303 84 TVAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV--DRFTQVRDIMSTDLVT 158 (475)
T ss_pred HHhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC--CCCCCHHHHccCCceE
Confidence 3456778899986 567999999998 9999999999988887 444332 2345789998889999
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.++++.|++++.+..+|+|+.|...|+++..
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~ 196 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRT 196 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 99999999999999999999999999999999999885
No 83
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.78 E-value=7.1e-05 Score=60.53 Aligned_cols=85 Identities=7% Similarity=0.040 Sum_probs=66.9
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccch----hhcccCCCCCCCccccc-ccCCcEecCCCCHHHHHHHHHhCCceEE
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPVK----NLLTIHPEDEVPVKNVS-IRRIPRVSETMPLYDILNEFQKGHSHMA 289 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PVk----Dll~~~~~~~~~v~~i~-~r~~~~Vpe~~~l~~lL~~fq~~~~hmA 289 (397)
++.+++.+.++. ++++.+.+++++.+||. .+++.. ...++. ...+++++++.++.++++.|++.+.+.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~Giv-----~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l 75 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDDGKLSGII-----TERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQI 75 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCCCCEEEEE-----EHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCee
Confidence 467889999998 89999998999999992 233221 112210 1127899999999999999999999999
Q ss_pred EEEecCCCcccccccc
Q 015949 290 VVVRHQNDREQPHVPI 305 (397)
Q Consensus 290 iVVDEyG~~~g~~~~~ 305 (397)
+|+|+-|...|+++..
T Consensus 76 pVv~~~~~~~Giit~~ 91 (96)
T cd04614 76 PIINGNDKLIGLLRDH 91 (96)
T ss_pred eEECCCCcEEEEEEHH
Confidence 9999889999999874
No 84
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.76 E-value=4.3e-05 Score=64.44 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=67.2
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc------C----CCCCCCcccccccCCcE--e--
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI------H----PEDEVPVKNVSIRRIPR--V-- 268 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~------~----~~~~~~v~~i~~r~~~~--V-- 268 (397)
+.+++.++++. ++++.+.++++..+|| +|++.. . .....++.++|.++... +
T Consensus 3 ~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 3 PIVIPADTSID-EALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CeEECCCCcHH-HHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 56889999998 8999998888889998 444421 0 11234577784333322 2
Q ss_pred --cCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 269 --SETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 269 --pe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++++++.++++.|.+++.+.++|+|+- |...|+++..
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~ 121 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTS 121 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHH
Confidence 378999999999999999999999984 8899999874
No 85
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.75 E-value=2.9e-05 Score=69.05 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=85.5
Q ss_pred cCCCCCHHHH---HHHHHhhc--cccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hh
Q 015949 183 KGGELTRDET---TIITGALE--LSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KN 245 (397)
Q Consensus 183 ~~G~l~~~E~---~ii~~~l~--l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kD 245 (397)
+.|.+++.=. .|+....+ =...+++.+|+. +++++.+++++. ++.+++.++|||.+|| .|
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~~k~VGsItE~~ 115 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEEDKVVGSITEND 115 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeCCeeeeeecHHH
Confidence 4577776542 22222222 255788999994 899999999998 9999999999999999 33
Q ss_pred hcccCC---C--CCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 246 LLTIHP---E--DEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 246 ll~~~~---~--~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+..- + ....++++|-.+.|.|+++.++.-+-+.+..+ =|+.|-|.|.+.|++++.
T Consensus 116 iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~---~AVlV~e~G~~vGIITk~ 177 (187)
T COG3620 116 IVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH---PAVLVVENGKVVGIITKA 177 (187)
T ss_pred HHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC---CeEEEEeCCceEEEEeHH
Confidence 333211 1 24567888777889999999998888777654 344444899999999984
No 86
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=97.63 E-value=4e-05 Score=55.83 Aligned_cols=48 Identities=15% Similarity=-0.021 Sum_probs=44.2
Q ss_pred ccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 258 KNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 258 ~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++|.++++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~ 49 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRS 49 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHH
Confidence 466677999999999999999999999999999999999999998873
No 87
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.63 E-value=7.4e-05 Score=78.77 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=73.5
Q ss_pred EEEeCCCChhHHHHHHHHhcCCCcccc-h------hhcc---------cCCCCCCCccccccc--CCcEecCCCCHHHHH
Q 015949 217 FAIDVSFKLDRNLMRLVLEKGHSRVPV-K------NLLT---------IHPEDEVPVKNVSIR--RIPRVSETMPLYDIL 278 (397)
Q Consensus 217 ~~L~~~~tl~~e~l~~i~~~g~SR~PV-k------Dll~---------~~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL 278 (397)
.+++.++++. ++++.+.+++++.+|| . .+++ .....+.++.++|.+ ++++++++.++.+++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl 186 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence 4899999998 9999999999999999 2 1222 111234678898654 677899999999999
Q ss_pred HHHHhCCceEEEEEecCCCcccccccc
Q 015949 279 NEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 279 ~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.|++++.+..+|+|+.|...|+++..
T Consensus 187 ~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 187 DIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 999999999999999999999999985
No 88
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=8.8e-05 Score=61.27 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=68.9
Q ss_pred EEEEeCCCChhHHHHHHHHhcC-CCcccc------------hhhcccCCC-------CCCCcccccccCCcEecCCCCHH
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKG-HSRVPV------------KNLLTIHPE-------DEVPVKNVSIRRIPRVSETMPLY 275 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g-~SR~PV------------kDll~~~~~-------~~~~v~~i~~r~~~~Vpe~~~l~ 275 (397)
+.+++.++++. ++++.+.+.+ ++++|| +|++..... ...++.++|.++++.+++++++.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~ 81 (119)
T cd04598 3 APTVSPDTTVN-DVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLE 81 (119)
T ss_pred cCccCCCCcHH-HHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHH
Confidence 45678999998 8999988887 889998 454432111 24567888667788999999999
Q ss_pred HHHHHHHhCCc---eEEEEEecCCCcccccccc
Q 015949 276 DILNEFQKGHS---HMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 276 ~lL~~fq~~~~---hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.|.+.+. .-++|+|+.|...|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~ 114 (119)
T cd04598 82 EVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVK 114 (119)
T ss_pred HHHHHHHcCCcccccccEEEeeCCeEEEEEEHH
Confidence 99999998875 2346889999999999874
No 89
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.54 E-value=6.4e-05 Score=63.73 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=72.4
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc----CCCCCCCcccccccCCcEecCCCCHHHH
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI----HPEDEVPVKNVSIRRIPRVSETMPLYDI 277 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~----~~~~~~~v~~i~~r~~~~Vpe~~~l~~l 277 (397)
++.+++.+.++. ++++.+.+++++.+|| +|++.. ......++.++|.++++.+.++.++.++
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v 81 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL 81 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence 567899999998 9999999999999999 444431 1224578999988899999999999999
Q ss_pred HHHHH---------hCCceEEEEEecCCCcccccccc
Q 015949 278 LNEFQ---------KGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 278 L~~fq---------~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+.|. ..+.+..+|+|+.|...|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~ 118 (124)
T cd04608 82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKI 118 (124)
T ss_pred HhhcccCCceEEEeccccccccccccccceEEEEehh
Confidence 98553 33567778889999999999873
No 90
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.39 E-value=0.00046 Score=55.70 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.|++++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITER 43 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHH
Confidence 5678999999999999999999989999999999999999874
No 91
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.37 E-value=0.00032 Score=60.69 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=63.4
Q ss_pred cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCC---CC------------ccccc-----
Q 015949 215 ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDE---VP------------VKNVS----- 261 (397)
Q Consensus 215 ~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~---~~------------v~~i~----- 261 (397)
++..++.++++. ++++.+.+++++.+|| +|++....... .. +.+++
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 567899999998 9999999999999999 55554321110 01 22242
Q ss_pred ----ccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCC
Q 015949 262 ----IRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQND 297 (397)
Q Consensus 262 ----~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~ 297 (397)
.++++++++++++.++++.|.+++.+-.+|+|+.++
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 256889999999999999999999999999998665
No 92
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00073 Score=70.22 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCC---Ccccc---------------hhhc
Q 015949 186 ELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGH---SRVPV---------------KNLL 247 (397)
Q Consensus 186 ~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~---SR~PV---------------kDll 247 (397)
.++++|++.++..+...+-+|..+||+ +.++++.+-|++ +++..+++.+. +++.+ ++++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll 190 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh
Confidence 378999999999999999999999997 889999999998 99999996554 33333 3444
Q ss_pred ccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 248 TIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 248 ~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
. .+++.+++++|.+.+.+|+.++..+++-+.|++-+.--+.|||+.|...|.++..
T Consensus 191 ~--a~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiD 246 (451)
T COG2239 191 T--AEPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITID 246 (451)
T ss_pred c--CCcHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHH
Confidence 3 3456779999777889999999999999999999999999999999999999985
No 93
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.31 E-value=0.00078 Score=55.14 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=77.0
Q ss_pred ccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------hhhcccCCCC--CC-CcccccccCCcEecCCC
Q 015949 208 DAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------KNLLTIHPED--EV-PVKNVSIRRIPRVSETM 272 (397)
Q Consensus 208 diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------kDll~~~~~~--~~-~v~~i~~r~~~~Vpe~~ 272 (397)
++|. .+..++..+.++. ++...+.+++++++|| +|++...... .. ++.++|.+++..+.++.
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 79 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT 79 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence 4455 5788999999998 9999999999999999 3554433211 22 47888666899999999
Q ss_pred CHHHHHHHHHh-CCceEEEEEecCC-Cccccccc
Q 015949 273 PLYDILNEFQK-GHSHMAVVVRHQN-DREQPHVP 304 (397)
Q Consensus 273 ~l~~lL~~fq~-~~~hmAiVVDEyG-~~~g~~~~ 304 (397)
++.++++.|.+ .+.+..+|+|+-+ ...|+++.
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~ 113 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITL 113 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence 99999999999 6999999999986 99999886
No 94
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.29 E-value=0.00019 Score=70.73 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 253 DEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 253 ~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++..++++|.. ++..+++++++.++++.+++.+....+|+|+. +.+.|++...
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~k 120 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAK 120 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHH
Confidence 45678999533 48999999999999999999998899999875 7899999864
No 95
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.13 E-value=0.099 Score=54.27 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=41.8
Q ss_pred CCCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEe-cCCCcccccccc
Q 015949 253 DEVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVR-HQNDREQPHVPI 305 (397)
Q Consensus 253 ~~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD-EyG~~~g~~~~~ 305 (397)
++.+++++|. .++.+++.+.+..++.+.+++.+-...+|.| .-..+.|++...
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~K 259 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVK 259 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHH
Confidence 3566777753 4678899999999999999888877888888 667777777664
No 96
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.00092 Score=55.11 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=38.3
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+..+++++++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~ 43 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKT 43 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehH
Confidence 356789999999999999999999999999999999999974
No 97
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.01 E-value=0.0012 Score=55.78 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=39.6
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.+++++.++.++++.|++.+....+|+|+.|...|+++..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~ 44 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLG 44 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence 6788999999999999999999988999999999999999874
No 98
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.86 E-value=0.00066 Score=55.79 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLP 43 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHH
Confidence 567899999999999999999989999999999999999874
No 99
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0014 Score=54.60 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++..+++++++.++++.|.+.+.+.++|+|+- |+..|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~ 44 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQR 44 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHH
Confidence 56789999999999999999889999999997 8889999874
No 100
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.84 E-value=0.0013 Score=58.66 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
...+.+|.+|+.+|.++.++.++++.|+..+..-.+|+++ |.+.|.++.+
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~ 114 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITEN 114 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHH
Confidence 3456778889999999999999999999999999999999 9999988875
No 101
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.82 E-value=0.00082 Score=54.00 Aligned_cols=42 Identities=10% Similarity=-0.126 Sum_probs=37.2
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.+++++++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~Giv~~~ 42 (105)
T cd04599 1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED-GKLVGIITSR 42 (105)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEehH
Confidence 46788999999999999999888888999995 8889999885
No 102
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.79 E-value=0.00054 Score=67.78 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCcccccccC--CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949 255 VPVKNVSIRR--IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP 304 (397)
Q Consensus 255 ~~v~~i~~r~--~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~ 304 (397)
.+++++|.++ ++.+++++++.++.+.|++.+...++|+|+.|...|+++.
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~ 248 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTD 248 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecH
Confidence 5688887676 8999999999999999999888899999999999999985
No 103
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.77 E-value=0.0013 Score=53.60 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=37.7
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.++++.++.++++.|.+.+...++|+|+ |+..|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~ 42 (111)
T cd04589 1 RPPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRT 42 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHH
Confidence 46778999999999999999988888999999 9999999874
No 104
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0034 Score=52.08 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=39.2
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++..+++++++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~ 43 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRF 43 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHH
Confidence 3678899999999999999999999999999989999999874
No 105
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.67 E-value=0.0015 Score=53.04 Aligned_cols=43 Identities=12% Similarity=-0.074 Sum_probs=38.7
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++..++.+.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 44 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSK 44 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHH
Confidence 4678899999999999999998888899999999999999874
No 106
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.64 E-value=0.0033 Score=52.73 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++..+++++++.++++.|.+++...++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~ 43 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISAS 43 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHH
Confidence 467899999999999999999888999999999999999974
No 107
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.64 E-value=0.0013 Score=52.95 Aligned_cols=43 Identities=16% Similarity=0.035 Sum_probs=38.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~ 43 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRR 43 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHH
Confidence 3678999999999999999999988899999999999999874
No 108
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.62 E-value=0.0013 Score=70.63 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=46.5
Q ss_pred CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..+++++|.++++.+++++++.++++.|++.+....+|+|+.|...|+++..
T Consensus 446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~ 497 (574)
T PRK01862 446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALK 497 (574)
T ss_pred hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHH
Confidence 3568888777889999999999999999999988999999999999999874
No 109
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.62 E-value=0.00093 Score=54.43 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=38.6
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.+.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 43 (112)
T cd04624 1 RPVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTER 43 (112)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHH
Confidence 4678899999999999999998888899999989999999874
No 110
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.62 E-value=0.0013 Score=53.65 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=38.2
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.++++.++.++++.|.+++.+.++|+|+ |...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~ 42 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDR 42 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhH
Confidence 56788999999999999999998899999999 9999999974
No 111
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.58 E-value=0.0047 Score=50.47 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=38.5
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLT 43 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHH
Confidence 567899999999999999999999999999999999999874
No 112
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.55 E-value=0.0019 Score=52.99 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLS 43 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence 356889999999999999998888999999999999999864
No 113
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.52 E-value=0.0023 Score=66.47 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=46.4
Q ss_pred CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..+++++|.+++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~ 385 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLR 385 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 3568888778899999999999999999998888899999989999999874
No 114
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.51 E-value=0.002 Score=51.84 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=36.7
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.+.++.++++.|++.+.+..+|+|+ |...|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~ 43 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSAR 43 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHH
Confidence 56788999999999999999888777888898 8889999874
No 115
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.51 E-value=0.0015 Score=52.75 Aligned_cols=41 Identities=7% Similarity=-0.040 Sum_probs=37.3
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~ 42 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDES 42 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHH
Confidence 5678999999999999999999999999999 9999999974
No 116
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.48 E-value=0.0022 Score=52.05 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.++++.++.++++.|++.+...++|+|+.|...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~ 43 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLD 43 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHH
Confidence 6788999999999999999998888899999989999999874
No 117
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=96.46 E-value=0.0027 Score=61.93 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=48.1
Q ss_pred CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+..-.++|.|++..|+++++++++.+.||+++..-..|+||.....|+|+..
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~ 295 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQR 295 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHH
Confidence 3445778899999999999999999999999999999999999999999985
No 118
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=96.45 E-value=0.0053 Score=65.44 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=44.8
Q ss_pred Ccccccc-cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 256 PVKNVSI-RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 256 ~v~~i~~-r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.++|. ++++++++++++.++.+.|.+.+.+..+|+|+.|...|+++..
T Consensus 247 ~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 247 PVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred CHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 5566655 6789999999999999999999999999999999999999975
No 119
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.43 E-value=0.0031 Score=50.99 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=37.5
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.+.++.++.++++.|++.+....+|+|+ |...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~ 42 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLA 42 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHH
Confidence 46788999999999999999988888889999 9999999974
No 120
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.43 E-value=0.0046 Score=49.80 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=38.7
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++..++++.++.++++.|.+.+...++|+|+.|...|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLE 44 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHH
Confidence 5678899999999999999998888899999989999999874
No 121
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.41 E-value=0.0033 Score=50.93 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=39.1
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 44 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSW 44 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHH
Confidence 6788999999999999999998888888999989999999974
No 122
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.41 E-value=0.0031 Score=51.20 Aligned_cols=42 Identities=7% Similarity=-0.104 Sum_probs=37.6
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.+.++.++.+.|++.+...++|+|+ |...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~ 43 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRR 43 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHH
Confidence 57789999999999999999888788899999 9989999874
No 123
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.005 Score=65.30 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=80.4
Q ss_pred ccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc------------------hhhcc-------------
Q 015949 200 ELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV------------------KNLLT------------- 248 (397)
Q Consensus 200 ~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV------------------kDll~------------- 248 (397)
.+++.+|+|+|.+ .+++++.-++++ .+.+.+..+.|.-||| +.++.
T Consensus 578 ~mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 578 YMRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred HhhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 3577899999998 899999999998 8999999999999999 00000
Q ss_pred --------------cCC---------------CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcc
Q 015949 249 --------------IHP---------------EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDRE 299 (397)
Q Consensus 249 --------------~~~---------------~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~ 299 (397)
..+ +--.++..+|-..|++||++|++..++..||+=..+-.+||+.-.++.
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~ 734 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVV 734 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCcee
Confidence 000 001344455434678999999999999999998888888888888889
Q ss_pred cccccc
Q 015949 300 QPHVPI 305 (397)
Q Consensus 300 g~~~~~ 305 (397)
|+.+..
T Consensus 735 gilTR~ 740 (762)
T KOG0474|consen 735 GILTRK 740 (762)
T ss_pred EEEehh
Confidence 998884
No 124
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.36 E-value=0.0067 Score=48.22 Aligned_cols=42 Identities=12% Similarity=-0.067 Sum_probs=38.0
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.+.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~ 43 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTER 43 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHH
Confidence 567899999999999999999888999999999999999864
No 125
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.35 E-value=0.0073 Score=49.38 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=34.4
Q ss_pred cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++.+.++.++++.|.+.+ ....+|+| .|...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~ 43 (115)
T cd04620 1 RHPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTER 43 (115)
T ss_pred CCCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHH
Confidence 46778999999999999998877 55666666 48899999874
No 126
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.34 E-value=0.003 Score=65.87 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=44.4
Q ss_pred CCCCcccccccCCcEecCCCCHHHHHHHHHh-----CCceEEEEEecCCCcccccccc
Q 015949 253 DEVPVKNVSIRRIPRVSETMPLYDILNEFQK-----GHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 253 ~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~-----~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.+++++|.+++..+++++++.++++.|++ ...+..+|+|+.|...|+++..
T Consensus 129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~ 186 (449)
T TIGR00400 129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIR 186 (449)
T ss_pred CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHH
Confidence 3456888877888999999999999999986 3456788899999999999874
No 127
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.34 E-value=0.0032 Score=51.58 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=37.4
Q ss_pred cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.+.+++++++.++++.|.++. ...++|+|+.|...|+++..
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 44 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLA 44 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHH
Confidence 46788999999999999997664 77899999999999999974
No 128
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.31 E-value=0.0031 Score=51.71 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=37.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++++.|++.+.+..+|+|+ |...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~ 42 (122)
T cd04585 1 KNPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDR 42 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHH
Confidence 36778999999999999999998888899999 9999999975
No 129
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.29 E-value=0.007 Score=48.97 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=38.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++..++++.++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~ 43 (113)
T cd04623 1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSER 43 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehH
Confidence 4567899999999999999999889999999999999999984
No 130
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.28 E-value=0.0053 Score=50.71 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=38.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++..++.++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRR 43 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcH
Confidence 4677899999999999999988888899999999999999975
No 131
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.28 E-value=0.011 Score=47.94 Aligned_cols=42 Identities=10% Similarity=-0.046 Sum_probs=37.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.++.+.++.++.+.|.+.+.+.++|+|+ |...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~ 42 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDR 42 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhH
Confidence 56788999999999999999888888999999 9999999974
No 132
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.27 E-value=0.0045 Score=49.96 Aligned_cols=43 Identities=14% Similarity=-0.063 Sum_probs=38.9
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++..++.+.++.++++.|.+.+..-++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 44 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNR 44 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhh
Confidence 6788999999999999999988888889999989999999874
No 133
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.27 E-value=0.012 Score=48.58 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=38.3
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~ 43 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQR 43 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHH
Confidence 567899999999999999999999999999999999999974
No 134
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.20 E-value=0.0078 Score=62.86 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=44.1
Q ss_pred CcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecC---CCcccccccc
Q 015949 256 PVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ---NDREQPHVPI 305 (397)
Q Consensus 256 ~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy---G~~~g~~~~~ 305 (397)
.+.+.+.+++..+++++++.++++.|++.+...++|+|+. |...|+++..
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~r 133 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKR 133 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHH
Confidence 3455667899999999999999999999999999999987 7899999974
No 135
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.19 E-value=0.0073 Score=48.98 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=37.6
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
.+..+++++++.++.+.|++.+.+-++|+|+. |...|+++..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~ 44 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTIT 44 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHH
Confidence 35689999999999999999999999999985 7899999974
No 136
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.18 E-value=0.0058 Score=50.19 Aligned_cols=43 Identities=12% Similarity=-0.085 Sum_probs=37.3
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~ 305 (397)
.++..+++++++.++++.|++.+...++|+|+ .|...|+++..
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~ 47 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSR 47 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhH
Confidence 35678999999999999999888888999998 68889998863
No 137
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.17 E-value=0.0025 Score=51.59 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=36.7
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~ 42 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTER 42 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHH
Confidence 4678999999999999999988889999998 8889999874
No 138
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.16 E-value=0.0057 Score=49.61 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++..++++.++.++++.|.+.+....+|+|+- |...|+++..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~ 44 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVK 44 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHH
Confidence 45789999999999999999887788888887 8999999874
No 139
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.15 E-value=0.017 Score=47.32 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=38.3
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++++.+++++++.++++.|++.+.+.++|+|+. |+..|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~ 44 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMR 44 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehH
Confidence 356789999999999999999888889999986 8999999984
No 140
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.14 E-value=0.0052 Score=50.53 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=37.3
Q ss_pred cCCcEecCCCCHHHHHHHHHhCC-ceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGH-SHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~-~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.+++++++.++++.|+..+ .+.++|+|+ |...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~ 43 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMRE 43 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHH
Confidence 57788999999999999998876 778999999 9999999864
No 141
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.14 E-value=0.0062 Score=50.43 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++.+.|.+.+.+.++|+|+-|...|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~ 44 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQR 44 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHH
Confidence 5788999999999999999998888899999889999999874
No 142
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.11 E-value=0.014 Score=49.42 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=39.0
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++++.|.+.+.+.++|+|+-|...|+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~ 44 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEG 44 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHH
Confidence 5678899999999999999999999999999989999999874
No 143
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.09 E-value=0.0045 Score=50.17 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=37.4
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++..++.+.++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~ 42 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLS 42 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHH
Confidence 46778999999999999999988888999999 9989999874
No 144
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.05 E-value=0.0042 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=37.0
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+..++++.++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDG 44 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcH
Confidence 45789999999999999999888999999999999999874
No 145
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.99 E-value=0.0061 Score=64.09 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=45.7
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.++|.+++.++++++++.++++.|++.+...++|+|+.|...|+++..
T Consensus 89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~r 139 (479)
T PRK07807 89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEA 139 (479)
T ss_pred cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHH
Confidence 345677789999999999999999999999999999999999999999863
No 146
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.98 E-value=0.0034 Score=53.90 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++++.++.++++.|++.+..-++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~ 43 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYR 43 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHH
Confidence 467899999999999999999888899999999999999975
No 147
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.96 E-value=0.0046 Score=50.30 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=37.9
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++++.++.++++.|.+.+.+..+|+|+-|...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 43 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFT 43 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehH
Confidence 567899999999999999988888899999989999999874
No 148
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.89 E-value=0.0061 Score=49.60 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=38.5
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+++.++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~ 43 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQ 43 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehH
Confidence 5678899999999999999988877888999999999999874
No 149
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.80 E-value=0.0062 Score=50.21 Aligned_cols=41 Identities=7% Similarity=-0.141 Sum_probs=37.0
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.+.++.++++.|++++.+..+|+|+ |...|+++..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~ 42 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEK 42 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchH
Confidence 5678999999999999999998888899998 9999999874
No 150
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.76 E-value=0.014 Score=47.44 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~ 43 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRY 43 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHH
Confidence 577899999999999999999888999999999999999874
No 151
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.76 E-value=0.004 Score=52.63 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=38.0
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.+.++.++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus 1 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~ 43 (132)
T cd04636 1 KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEG 43 (132)
T ss_pred CCCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHH
Confidence 3577899999999999999988888889999989999998864
No 152
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.73 E-value=0.0079 Score=49.86 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=38.0
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
+++..++++.++.++++.|.+.+.+-++|+|+- |...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~ 44 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITAT 44 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHH
Confidence 357789999999999999999888888999987 9999999874
No 153
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.61 E-value=0.014 Score=47.24 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=36.8
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++..|.++.++.++++.|.+.+...++|+|+-|...|+++..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~ 43 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRD 43 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHH
Confidence 466789999999999999988877888999989999999874
No 154
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=95.60 E-value=0.026 Score=45.76 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=36.5
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++++.++.++++.|.+.+.+.++|+|+ |...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~ 42 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSK 42 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhH
Confidence 5678999999999999999888888999998 9999999874
No 155
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=95.54 E-value=0.017 Score=60.85 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=80.8
Q ss_pred cceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhccc----CCCCCCCcccccccCC
Q 015949 203 EKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTI----HPEDEVPVKNVSIRRI 265 (397)
Q Consensus 203 ~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~----~~~~~~~v~~i~~r~~ 265 (397)
-+++.++|+- ..++++..+++. ++...+.+.|-|-+-| ||+... ......++.++|..|+
T Consensus 148 ~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~ 224 (610)
T COG2905 148 LTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCc
Confidence 3456777774 456899999998 8999999999994444 666542 2234678999988999
Q ss_pred cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..|..+..+++++-.|-++++|-.+|.++ |.+.|+++-+
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e~-gq~~Gilt~~ 263 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTED-GQPLGILTLT 263 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeecC-CeeeEEeeHH
Confidence 99999999999999999999999988665 9999999875
No 156
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.53 E-value=0.025 Score=57.83 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=75.5
Q ss_pred ccceecccceeCc-cEEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCC-----CC-cccc-
Q 015949 202 SEKTARDAMTPAS-ETFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDE-----VP-VKNV- 260 (397)
Q Consensus 202 ~~~~V~diMtPr~-~v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~-----~~-v~~i- 260 (397)
-.++..|.=.+-- ++..+..+.++- ++++.+...+.|-+|| .|+.....+.. .. ++..
T Consensus 224 l~~s~~dl~ig~~~~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~ 302 (381)
T KOG1764|consen 224 LSKSLSDLGIGTWSNIASISEDTPVI-EALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEAL 302 (381)
T ss_pred hhCCHHHhCcchhhhheeecCCCcHH-HHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHh
Confidence 3445555544333 589999999998 9999999999999999 23332211111 11 1111
Q ss_pred cc-----cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 261 SI-----RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 261 ~~-----r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.. -+++.+..+-++..++++|.+++.|.+.|||+.|...|+++-.
T Consensus 303 ~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs 352 (381)
T KOG1764|consen 303 SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS 352 (381)
T ss_pred hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence 01 2357788999999999999999999999999999999999984
No 157
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=95.48 E-value=0.013 Score=47.32 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=35.5
Q ss_pred cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++++++++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~ 42 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLK 42 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHH
Confidence 47899999999999999999899999999 9999999874
No 158
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.37 E-value=0.013 Score=47.51 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=31.8
Q ss_pred ecCCCCHHHHHHHHHhCC-----ceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGH-----SHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~-----~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++++++.++++.|++.+ ...++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~ 44 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLR 44 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHH
Confidence 578899999999998766 35678899889999999874
No 159
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=95.31 E-value=0.012 Score=62.05 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=45.0
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.++|.+++.+++++.++.++++.|++.+.+-++|+|+.|...|+++..
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~ 137 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNR 137 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHH
Confidence 5666778999999999999999999999999999999999999999974
No 160
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=95.30 E-value=0.011 Score=42.73 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=33.0
Q ss_pred ecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949 206 ARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV 243 (397)
Q Consensus 206 V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV 243 (397)
|+++|+| ++.+++.++++. ++++.+.+++++++||
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V 35 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPV 35 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEE
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEE
Confidence 5789998 888999999998 9999999999999999
No 161
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=95.28 E-value=0.018 Score=38.55 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=36.8
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVP 304 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~ 304 (397)
+++++++++++.++++.|++.+.+.++|+|+.|...|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTR 41 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence 45789999999999999999999999999988888888876
No 162
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.26 E-value=0.018 Score=47.98 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=45.6
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.++|.+++.++++++++.++++.|++.+.+..+|+|+-|...|+++..
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~ 108 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLL 108 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 457888778899999999999999999999989999999989999998873
No 163
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.22 E-value=0.03 Score=57.26 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred ceeCccEEEEeCCCChhHHHHHHHHhcCCCcccchh--------------hcccC--CCC--------CCCcccc---cc
Q 015949 210 MTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPVKN--------------LLTIH--PED--------EVPVKNV---SI 262 (397)
Q Consensus 210 MtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PVkD--------------ll~~~--~~~--------~~~v~~i---~~ 262 (397)
++++...+++.+..++- ++...+.++++.|+||-| ++... ... ..++.++ +.
T Consensus 158 ~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~ 236 (381)
T KOG1764|consen 158 ETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTW 236 (381)
T ss_pred cccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchh
Confidence 45555657777777775 788889999999999911 11110 000 1122222 13
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..+..+.+++|+.++++.|..++..=.+|||++|+..|..+..
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~ 279 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRF 279 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehh
Confidence 4578999999999999999999999999999999998877774
No 164
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.08 E-value=0.025 Score=46.66 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=36.9
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.++.+.++.++++.|++.+.+..+|+|+ |+..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~ 42 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDR 42 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHH
Confidence 5678999999999999999988888999998 9999999874
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.01 E-value=0.041 Score=58.36 Aligned_cols=45 Identities=4% Similarity=-0.207 Sum_probs=41.0
Q ss_pred cccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949 261 SIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI 305 (397)
Q Consensus 261 ~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~ 305 (397)
++++++.+++++++.++++.|.+.+...++|+|+ .|...|+++..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~ 153 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKR 153 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHH
Confidence 5799999999999999999999999999999998 47889999874
No 166
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=94.91 E-value=0.027 Score=45.61 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+.++.+.++.++++.|++.+...++|+|+-|...|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDG 44 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechH
Confidence 456789999999999999988878888999889999999964
No 167
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.041 Score=57.39 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=44.2
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHH-----hCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQ-----KGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq-----~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.....+|-.+.+.+++++++.+++..+| ....+..+|+|+.+...|+++-.
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~ 187 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLR 187 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHH
Confidence 3466677788999999999999999999 45678899999999999999875
No 168
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.62 E-value=0.021 Score=46.26 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=36.9
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|++..++++.++.++++.|++.+.+.++|+|+ |...|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~ 42 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITER 42 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHH
Confidence 56788999999999999999988889999996 5778888874
No 169
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.37 E-value=0.035 Score=58.41 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=42.8
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+..+++.+++.++++++++.++++.|++.+...++|+|+ |...|+++..
T Consensus 88 VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~r 137 (475)
T TIGR01303 88 VKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDS 137 (475)
T ss_pred cchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHH
Confidence 3455666889999999999999999999999999999986 7788988874
No 170
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.1 Score=53.68 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=72.1
Q ss_pred ceecccceeCcc-EEEEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEec
Q 015949 204 KTARDAMTPASE-TFAIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVS 269 (397)
Q Consensus 204 ~~V~diMtPr~~-v~~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vp 269 (397)
.++.++|.+... ......+.+.. +++..+...+.++..| +++..... +...+.+.+......|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 351 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT-QQQGLDAALIDAPLAVD 351 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhh-cCCchhhhhccCCceeC
Confidence 577888854322 22334556776 8999999999988888 23332211 22345565456788999
Q ss_pred CCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 270 ETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 270 e~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++++.+++..|.+.... ..|||+.|...|+++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~ 386 (400)
T PRK10070 352 AQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKG 386 (400)
T ss_pred CCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHH
Confidence 999999999999998777 77889999999999985
No 171
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.66 E-value=0.11 Score=54.94 Aligned_cols=49 Identities=12% Similarity=-0.064 Sum_probs=42.4
Q ss_pred cccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949 257 VKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI 305 (397)
Q Consensus 257 v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~ 305 (397)
..+.++++++.+++++++.++++.|++.+...++|+|+ .|...|+++..
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~ 149 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSR 149 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHH
Confidence 44456788999999999999999999999999999998 37788999874
No 172
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.58 E-value=0.065 Score=56.78 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=38.8
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~ 305 (397)
..++.|++++++.++++.|.+.+...++|+|+ .|...|+++..
T Consensus 105 ~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~ 150 (502)
T PRK07107 105 VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSR 150 (502)
T ss_pred CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcH
Confidence 45679999999999999999999999999997 68999999974
No 173
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=93.35 E-value=0.076 Score=52.69 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..+++++|.+ +++.|++++++.++++.|.+.+.+..+|+|+.|...|+++..
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~ 254 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDG 254 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecH
Confidence 3468888665 889999999999999999988888889999999999999974
No 174
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.13 E-value=5.9 Score=40.91 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=44.7
Q ss_pred CCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEEEecC-CCcccccccc
Q 015949 253 DEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQ-NDREQPHVPI 305 (397)
Q Consensus 253 ~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEy-G~~~g~~~~~ 305 (397)
++.+++++|.. ++..++.+.++.++++.|++.+....+|+++. +.+.|++...
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~k 244 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIK 244 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHH
Confidence 35678888643 58899999999999999999999999999874 6889988874
No 175
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.49 E-value=0.17 Score=42.29 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=38.3
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++.+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~ 43 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAV 43 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHH
Confidence 467899999999999999999999999999989999999864
No 176
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.04 E-value=0.45 Score=48.38 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=63.0
Q ss_pred EEeCCCChhHHHHHHHHhcCCCcccc-------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhC
Q 015949 218 AIDVSFKLDRNLMRLVLEKGHSRVPV-------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKG 284 (397)
Q Consensus 218 ~L~~~~tl~~e~l~~i~~~g~SR~PV-------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~ 284 (397)
....+.+.. ++++.+...+.....| +++..... ....+.+.+....+.|++++++.+++..|.+.
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARK-KAQGLQDVLIDDIYTVDAGTLLRETVRKVLKA 331 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhh-cCCchhhhhccCCceECCCCcHHHHHHHHHhC
Confidence 445566776 7888888877766655 23322211 12245555556788999999999999999999
Q ss_pred CceEEEEEecCCCcccccccc
Q 015949 285 HSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 285 ~~hmAiVVDEyG~~~g~~~~~ 305 (397)
... ..|+|+.|...|+++..
T Consensus 332 ~~~-~~v~~~~~~~~g~i~~~ 351 (363)
T TIGR01186 332 GIK-VPVVDEDQRLVGIVTRG 351 (363)
T ss_pred CCC-EEEECCCCcEEEEEEHH
Confidence 988 88889999999999985
No 177
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=92.01 E-value=0.2 Score=43.16 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=38.4
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.+++++++.++++.|.+.+.+.++|+|+.|...|+++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~ 43 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLG 43 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 467899999999999999999989999999999999999964
No 178
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=91.76 E-value=0.24 Score=41.26 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=38.9
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+++..+++++++.++++.|++.+.+.++|+|+.|...|+++..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 43 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRH 43 (128)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHH
Confidence 4567899999999999999999999999999999999999874
No 179
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=91.61 E-value=0.18 Score=53.88 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+++++|.++++.+++++++.++++.|++.+.+..+|+|+.|...|+++..
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~ 118 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLS 118 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHH
Confidence 468888788999999999999999999999999999999999999999875
No 180
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=91.42 E-value=0.28 Score=40.38 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=38.6
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+..+++++++.++++.|.+.+...++|+|+.|...|+++..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~ 43 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRK 43 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHH
Confidence 568899999999999999999889999999999999999974
No 181
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=91.37 E-value=0.11 Score=50.09 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=47.3
Q ss_pred CCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 254 EVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 254 ~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..++.++|.++++.|..++++.++-..|-+++.+-|+|+|.. .+.|+.+..
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~ 221 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLS 221 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHH
Confidence 457889989999999999999999999999999999999996 999999874
No 182
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=91.20 E-value=0.12 Score=51.91 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=73.0
Q ss_pred Ccccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccccCCCCccceeeccCCcchhhHHhhhhhh
Q 015949 256 PVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPIEHSTDEREVRVDVDGQSHLKEKCLKTKR 333 (397)
Q Consensus 256 ~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (397)
.+.++|. .+.-+..++.++.+.++.-.+.+....+|+|++-.+.|+|+-..-.+..++.. -+|.....
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~---------ieKVMtkn- 258 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTT---------IEKVMTKN- 258 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCcc---------HHHHhccC-
Confidence 3566632 56679999999999999999999999999999999999999852111111111 12333221
Q ss_pred hhhhhcCCCccccccc-CCCCCCC--ccccCCccccccCCCCCCCCCCCcceEEEeehhHHHHHh
Q 015949 334 SLKKRNRLSHDANLHR-GASTSKN--WSRDFHSEVLHITDDPQRMENGEWEAVGIITLEDVIEEL 395 (397)
Q Consensus 334 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~giit~edv~eel 395 (397)
|...+.+. -++.+.+ ||.= +-+|-..++...+||||=-||++-|
T Consensus 259 --------p~tv~~~tsVAsvaq~MiwE~i----------em~PVv~~n~~llGiitR~dvlk~l 305 (432)
T COG4109 259 --------PITVRAKTSVASVAQMMIWEGI----------EMLPVVDSNNTLLGIITRQDVLKSL 305 (432)
T ss_pred --------CeeecccchHHHHHHHHHhccc----------eeeeEEcCCceEEEEEEHHHHHHHH
Confidence 22222211 1122222 5532 2467778899999999999999865
No 183
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.85 E-value=0.23 Score=50.74 Aligned_cols=134 Identities=11% Similarity=0.126 Sum_probs=96.8
Q ss_pred ccccHHHHHHHHHhhccccc-cCCCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcc
Q 015949 163 ALFRRAELKTLVDLHGNEAG-KGGELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRV 241 (397)
Q Consensus 163 ~~~s~eEL~~lv~~~~~e~~-~~G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~ 241 (397)
+.+|+.|......+++.=+- ...-=.+++..++.++=.|..--+. +-+.+.++.++. ++++.-..+||+.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~-------~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN-------NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc-------CCcccCCcccch-hhhhhccccccccc
Confidence 45778887776654431100 0111135566777777666553332 335778889998 89999999999999
Q ss_pred cc----------------hhhcccCCCCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 242 PV----------------KNLLTIHPEDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 242 PV----------------kDll~~~~~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|| +|+-.. .+..+.+.++|...+...|...++.++=+.+++.+-.-.+|||+.|+...+++..
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt 221 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT 221 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence 99 222211 3456778888877789999999999999999999999899999999999988885
No 184
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=90.55 E-value=0.23 Score=47.55 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCcccccccC-CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRR-IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~-~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.++|.++ ++.++++.++.++++.|++.+...++|+|+.|...|+++..
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~ 206 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDG 206 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcH
Confidence 4677886677 89999999999999999999889999999999999999974
No 185
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=90.36 E-value=0.48 Score=50.32 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=46.0
Q ss_pred CCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 255 VPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 255 ~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
+.+.+++.+|++.|++.+|+.++-++|...+..-.+|+|.-|.-.|+++..
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~ 199 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRK 199 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehH
Confidence 456777789999999999999999999999999888889999999999884
No 186
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=90.13 E-value=0.35 Score=39.29 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=34.8
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEec---CCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRH---QNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE---yG~~~g~~~~~ 305 (397)
...++++.++.++.+.|.+.+....+|+|+ -|...|+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~ 47 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRS 47 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHH
Confidence 457899999999999999887767888898 58899999874
No 187
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=88.05 E-value=0.55 Score=38.28 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=38.2
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.++++.++.++++.|.+.+....+|+|+.|...|+++..
T Consensus 1 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~ 43 (121)
T cd04584 1 RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDR 43 (121)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHH
Confidence 4678899999999999999988877889999999999999874
No 188
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=87.50 E-value=0.62 Score=39.97 Aligned_cols=42 Identities=7% Similarity=-0.085 Sum_probs=37.5
Q ss_pred cCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 263 RRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 263 r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++++.+++++++.++++.|++.+...++|+|+ |...|+++..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~ 42 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSES 42 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHH
Confidence 35678999999999999999999889999999 9989999864
No 189
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=86.63 E-value=0.44 Score=48.28 Aligned_cols=75 Identities=11% Similarity=0.152 Sum_probs=48.1
Q ss_pred HHHHHhcCCCcccc----hhhc-ccCCCCCCCccccccc--CCcEecCCCCHHHHHHHHHhCCceEEEE-EecCCCcccc
Q 015949 230 MRLVLEKGHSRVPV----KNLL-TIHPEDEVPVKNVSIR--RIPRVSETMPLYDILNEFQKGHSHMAVV-VRHQNDREQP 301 (397)
Q Consensus 230 l~~i~~~g~SR~PV----kDll-~~~~~~~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~~~hmAiV-VDEyG~~~g~ 301 (397)
++-+.+..|+..|+ +|.+ +...-++..|.|+|.. .+.-+.-+.+...+.+++..+.-...+| -|.-..+.|+
T Consensus 170 lR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGv 249 (423)
T COG4536 170 LRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGV 249 (423)
T ss_pred HHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhh
Confidence 44455556667777 3443 3333346778898753 4677999999999999987765444444 3444556666
Q ss_pred ccc
Q 015949 302 HVP 304 (397)
Q Consensus 302 ~~~ 304 (397)
+-.
T Consensus 250 lh~ 252 (423)
T COG4536 250 LHV 252 (423)
T ss_pred hhH
Confidence 544
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=84.89 E-value=1.1 Score=46.12 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=34.2
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+++.+..+++..|+..+..-++|+|+.|...|.++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 327 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSID 327 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHH
Confidence 44677899999999999999999999999999999874
No 191
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=83.45 E-value=1.2 Score=36.77 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred ceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949 204 KTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV 243 (397)
Q Consensus 204 ~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV 243 (397)
.+++++|.+ ++..++.++++. ++++.+.+.++..+||
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpV 94 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPV 94 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEE
Confidence 679999986 566899999998 9999999999999998
No 192
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=80.57 E-value=2.4 Score=43.52 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc--h------hhcccCC-CCCCCcccccccC
Q 015949 194 IITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV--K------NLLTIHP-EDEVPVKNVSIRR 264 (397)
Q Consensus 194 ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV--k------Dll~~~~-~~~~~v~~i~~r~ 264 (397)
++..+-..+-.+++++|.|...+. ..+.+ . ++.. .+.+...| + +...... .....+.++ .+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~~--~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 334 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDLE--HVDGG-W--CVSD---RRDTWLFTIDKQVRRRDAKLPVQAWAAEQEVESL-EAA 334 (382)
T ss_pred HhcccCcccceeHHHHhccccccc--ccCcc-h--hhhh---cccceeEeeccceecccchHhHhhcccccchhhh-ccc
Confidence 334444466678999998755422 22333 1 2222 56666555 2 1111111 022345554 678
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.+.|++++++.+++..+.....++++| |+ |...|+++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-~~~~g~~~~~ 373 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGAILLV-EN-GRIVGVIGDD 373 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCCeEEe-eC-CeEEEEEeHH
Confidence 899999999999999999888887765 77 9999999874
No 193
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=80.51 E-value=3.1 Score=42.36 Aligned_cols=40 Identities=13% Similarity=-0.094 Sum_probs=34.6
Q ss_pred cEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 266 PRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 266 ~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
....++.+..++++.|+..+..-++|+|+.+...|.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 292 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVE 292 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHH
Confidence 3456677899999999999999999999999998888864
No 194
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=79.06 E-value=2.7 Score=33.64 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
.++.+++++++.++++.|.+.+.+..+|.|+ |...|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~ 42 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER-GELVGLLTFR 42 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHH
Confidence 3567899999999999998877766666666 8989999874
No 195
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=77.17 E-value=5.4 Score=43.13 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=68.7
Q ss_pred cceecccceeCcc---EEEEeC-CCChhHHHHHHHHhcCCCcccc---------------hhhcc---------------
Q 015949 203 EKTARDAMTPASE---TFAIDV-SFKLDRNLMRLVLEKGHSRVPV---------------KNLLT--------------- 248 (397)
Q Consensus 203 ~~~V~diMtPr~~---v~~L~~-~~tl~~e~l~~i~~~g~SR~PV---------------kDll~--------------- 248 (397)
+.-..++|-|+.. ...+.. +.+++ +....+.++.||.||| +|+.-
T Consensus 542 ~t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~ 620 (696)
T KOG0475|consen 542 STLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTT 620 (696)
T ss_pred cchhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceec
Confidence 3345566666542 344444 48898 8999999999999999 22211
Q ss_pred ----cCC--------CCCCCcccccccCCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 249 ----IHP--------EDEVPVKNVSIRRIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 249 ----~~~--------~~~~~v~~i~~r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
..+ .+...+++++--.|..|...+|...+++.|++-...-..| ++.|...|++++.
T Consensus 621 ~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkk 688 (696)
T KOG0475|consen 621 SIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKK 688 (696)
T ss_pred ccccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehH
Confidence 000 0123456663345678999999999999999776555544 8889999998874
No 196
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=72.65 E-value=5.7 Score=31.48 Aligned_cols=42 Identities=12% Similarity=-0.006 Sum_probs=36.0
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
++.++..+.++.+++..|++.+...++|+|+-|...|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~ 43 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRK 43 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHH
Confidence 456788899999999999988877888999889999999874
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=70.85 E-value=4.7 Score=40.55 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=67.1
Q ss_pred HHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc----hhhcccCCCCCCCcccccccCCcE
Q 015949 192 TTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV----KNLLTIHPEDEVPVKNVSIRRIPR 267 (397)
Q Consensus 192 ~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV----kDll~~~~~~~~~v~~i~~r~~~~ 267 (397)
++.++++-...=.++++||.+ .+--.-..+..-.+..++.+...+-+.+-+ .+.......+ ..++.....++..
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~~~~~~~ 339 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSID-SLVKAALIDDVLT 339 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEecc-chhcccccccccc
Confidence 567777777888899999995 221111111111113444444444322211 1111111111 1112123567889
Q ss_pred ecCCCCHHHHHHHHHhCCceEEEEEecCCCcccccccc
Q 015949 268 VSETMPLYDILNEFQKGHSHMAVVVRHQNDREQPHVPI 305 (397)
Q Consensus 268 Vpe~~~l~~lL~~fq~~~~hmAiVVDEyG~~~g~~~~~ 305 (397)
|+.++++.+++...++..+++|+| ||.|...|.++..
T Consensus 340 v~~d~~~~~~~~~~~~~~~p~aVv-de~~r~vG~i~~~ 376 (386)
T COG4175 340 VDADTPLSEILARIRQAPCPVAVV-DEDGRYVGIISRG 376 (386)
T ss_pred cCccchHHHHHHHHhcCCCceeEE-cCCCcEEEEecHH
Confidence 999999999999999999999866 9999999998874
No 198
>COG0517 FOG: CBS domain [General function prediction only]
Probab=65.63 E-value=9.7 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=33.1
Q ss_pred eecccceeCccEEEEeCCCChhHHHHHHHHh-cCCCcccc
Q 015949 205 TARDAMTPASETFAIDVSFKLDRNLMRLVLE-KGHSRVPV 243 (397)
Q Consensus 205 ~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~-~g~SR~PV 243 (397)
++.++|++ .+.+++.+.++. ++.+.+.+ .+++++||
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpV 99 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPV 99 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEE
Confidence 79999997 778999999998 99999999 79999999
No 199
>PRK11573 hypothetical protein; Provisional
Probab=65.15 E-value=1.8e+02 Score=30.18 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=40.9
Q ss_pred CCCCcccccc--cCCcEecCCCCHHHHHHHHHhCCceEEEEEec-CCCcccccccc
Q 015949 253 DEVPVKNVSI--RRIPRVSETMPLYDILNEFQKGHSHMAVVVRH-QNDREQPHVPI 305 (397)
Q Consensus 253 ~~~~v~~i~~--r~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE-yG~~~g~~~~~ 305 (397)
++.+++++|. .++..++.+.++.++++.+++.+....+|.++ ...+.|++...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~k 240 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVR 240 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHH
Confidence 3456777753 35789999999999999999988888888654 46777777653
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=51.49 E-value=19 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.1
Q ss_pred EEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949 216 TFAIDVSFKLDRNLMRLVLEKGHSRVPV 243 (397)
Q Consensus 216 v~~L~~~~tl~~e~l~~i~~~g~SR~PV 243 (397)
+.+++.++++. ++++.+.+.+++++||
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v 28 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPV 28 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccE
Confidence 35678889997 8999999999999998
No 201
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=44.50 E-value=11 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=13.2
Q ss_pred CCCccccCCccccccCCCCCCCC
Q 015949 354 SKNWSRDFHSEVLHITDDPQRME 376 (397)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~ 376 (397)
.+-|.++|.+ ..|++|+|||..
T Consensus 11 g~Hwa~~C~s-k~d~~G~pl~p~ 32 (36)
T PF14787_consen 11 GFHWASECRS-KTDVDGNPLPPP 32 (36)
T ss_dssp SCS-TTT----TCCCCCEE-S--
T ss_pred Ccchhhhhhh-hhcccCCCCcCc
Confidence 3569999998 999999999964
No 202
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=42.51 E-value=76 Score=30.97 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhh
Q 015949 132 APFVQILVRICFPIAFPVSKLLDLLL 157 (397)
Q Consensus 132 a~~l~~~~~l~~Pl~~~l~~l~~~ll 157 (397)
.++.|+++-+|+|++|+-+++.++-.
T Consensus 209 tYi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 209 TYICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999999988753
No 203
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=41.59 E-value=69 Score=33.73 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhc-----chhHHHHHH------
Q 015949 10 TGFFTRVVVVTLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQ-----HLLLCTLLF------ 78 (397)
Q Consensus 10 ~~~~~~ilii~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~-----~~lL~tili------ 78 (397)
...|+.++++++++..-|..=|...|++.+.+..-+ ++|+.. .+++.-.++-+. .+++..=++
T Consensus 255 V~p~vAV~lff~~m~~vGMlEGmQiAffavakl~~e---ergs~~---f~~Ktc~LlFkGnG~NLpgfmiGRQltVv~~f 328 (545)
T TIGR00811 255 IPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKA---ERGDHP---FARKTCELLFKGNGRNLPGFMVGRQMTVTLCF 328 (545)
T ss_pred CCccHHHHHHHHHHHHHHHhhhceeEEEEecCCCHH---HccCCh---hHHHHHHHHhcCCCCCCCceeecceeEEEEEE
Confidence 345677777777888888888888999988875555 233321 355555554322 222222110
Q ss_pred ---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHH
Q 015949 79 ---------------CNAAAMEALPIFLDSLVPAWGAIVISVTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICF 143 (397)
Q Consensus 79 ---------------gn~~a~~~~~~~~~~~~~~~~a~li~t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~ 143 (397)
||++..+ +-....++. ..+...++..+.|-|..|--|+.+|..+... |+.+++.++..
T Consensus 329 FvV~~iT~L~i~~G~~~nIfGv--sD~~Q~ffn---~g~~gaviTTIlasitwQ~aASafpiaFlNN--p~ty~lL~~aL 401 (545)
T TIGR00811 329 FIIARVTTLDIEVGVDDNIFGV--SDGIQEFFN---LGFLGAIITTILASIAWQLVASAFPIAFLSN--PIVYIVLRIVL 401 (545)
T ss_pred EEeeeccccCCCCCCCCccccC--cHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHhCcHHHhcC--HHHHHHHHHHH
Confidence 1111110 000111111 1112223334799999999999999887654 55555544433
Q ss_pred HH--------HHHhhhHhhhhhcCCC
Q 015949 144 PI--------AFPVSKLLDLLLGKGN 161 (397)
Q Consensus 144 Pl--------~~~l~~l~~~llg~~~ 161 (397)
=+ +|++..+..++-|.+.
T Consensus 402 ~LE~TGlchgawvi~~i~k~vaG~q~ 427 (545)
T TIGR00811 402 LIEATGICAGAWFLGMIHKKVAGFQL 427 (545)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 32 5666666666667654
No 204
>PHA00728 hypothetical protein
Probab=36.32 E-value=22 Score=30.54 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949 189 RDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV 243 (397)
Q Consensus 189 ~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV 243 (397)
.++-+-|+|-....++.+++...|+..||+++-+.- + -.+-..-|.|+|.
T Consensus 36 ~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnqi-s----LILtAfEfarLP~ 85 (151)
T PHA00728 36 DEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQI-S----LILTAFEFARLPA 85 (151)
T ss_pred hhhHHHhcCCceehhHHHHHhcCCccceEEecCCch-h----hHHHHHHHhhchh
Confidence 444566889999999999999999999999997642 1 1233445777776
No 205
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=36.10 E-value=37 Score=24.74 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 015949 11 GFFTRVVVVTLLVLFAGLMSG 31 (397)
Q Consensus 11 ~~~~~ilii~~li~lsa~fSg 31 (397)
.+|+|+++ +.+++||+++-
T Consensus 2 PwWvY~vi--~gI~~S~ym~v 20 (52)
T PF14147_consen 2 PWWVYFVI--AGIIFSGYMAV 20 (52)
T ss_pred cchHHHHH--HHHHHHHHHHH
Confidence 57887754 45667777653
No 206
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=33.26 E-value=29 Score=33.53 Aligned_cols=51 Identities=16% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCCccccccc--CCcEecCCCCHHHHHHHHHhC-CceEEEEEecCCCccccccc
Q 015949 254 EVPVKNVSIR--RIPRVSETMPLYDILNEFQKG-HSHMAVVVRHQNDREQPHVP 304 (397)
Q Consensus 254 ~~~v~~i~~r--~~~~Vpe~~~l~~lL~~fq~~-~~hmAiVVDEyG~~~g~~~~ 304 (397)
+..++++|+. .+.+++.+.++.+.+..+... ++.+-++-+....+.|+.--
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~A 119 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLA 119 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhH
Confidence 3457888653 468899999999999998665 45555555555667776544
No 207
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=29.69 E-value=53 Score=24.63 Aligned_cols=31 Identities=6% Similarity=0.185 Sum_probs=24.6
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
+...+++.+++.++|+++.....++|+.+|.
T Consensus 8 ~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~ 38 (66)
T PRK08053 8 QPMQCAAGQTVHELLEQLNQLQPGAALAINQ 38 (66)
T ss_pred eEEEcCCCCCHHHHHHHcCCCCCcEEEEECC
Confidence 3456788899999999998877778877664
No 208
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=28.88 E-value=56 Score=24.27 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
+...+++.+++.++|+++.-...++|+.+|.
T Consensus 7 ~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg 37 (65)
T cd00565 7 EPREVEEGATLAELLEELGLDPRGVAVALNG 37 (65)
T ss_pred eEEEcCCCCCHHHHHHHcCCCCCcEEEEECC
Confidence 3456788999999999998887788877654
No 209
>CHL00038 psbL photosystem II protein L
Probab=28.32 E-value=78 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015949 11 GFFTRVVVVTLLVLFAGLM 29 (397)
Q Consensus 11 ~~~~~ilii~~li~lsa~f 29 (397)
-+|-.++++++.+++|.+|
T Consensus 18 Ly~GLLlifvl~vlfssyf 36 (38)
T CHL00038 18 LYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4576677777778888776
No 210
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=27.14 E-value=94 Score=21.01 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015949 11 GFFTRVVVVTLLVLFAGLM 29 (397)
Q Consensus 11 ~~~~~ilii~~li~lsa~f 29 (397)
-+|..++++++-+++|..|
T Consensus 17 LY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4676677777778888776
No 211
>PRK07440 hypothetical protein; Provisional
Probab=25.85 E-value=66 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.0
Q ss_pred CCcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 264 RIPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 264 ~~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
++.-+++.+++.++|+++.-...++|+.+|.
T Consensus 12 ~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~ 42 (70)
T PRK07440 12 ETRTCSSGTSLPDLLQQLGFNPRLVAVEYNG 42 (70)
T ss_pred EEEEcCCCCCHHHHHHHcCCCCCeEEEEECC
Confidence 3456788999999999998888888888764
No 212
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.65 E-value=96 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015949 15 RVVVVTLLVLFAGLMSGLTLGLM 37 (397)
Q Consensus 15 ~ilii~~li~lsa~fSg~E~Al~ 37 (397)
.+++.+++++.++.||++..|--
T Consensus 6 sifL~l~~~LsA~~FSasamAa~ 28 (61)
T PF15284_consen 6 SIFLALVFILSAAGFSASAMAAD 28 (61)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHh
Confidence 46677788889999999988743
No 213
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.42 E-value=77 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=24.8
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEe
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVR 293 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVD 293 (397)
+.-+++.+++.++|+.+.-...++|+.+|
T Consensus 9 ~~~~~~~~tl~~lL~~l~~~~~~vav~vN 37 (66)
T PRK05659 9 PRELPDGESVAALLAREGLAGRRVAVEVN 37 (66)
T ss_pred EEEcCCCCCHHHHHHhcCCCCCeEEEEEC
Confidence 45678899999999999888888888876
No 214
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=22.94 E-value=70 Score=21.57 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 015949 18 VVTLLVLFAGLMSGLTLGLMSMSLVDLEV 46 (397)
Q Consensus 18 ii~~li~lsa~fSg~E~Al~Sl~~~~L~~ 46 (397)
++++|+..++.|...+.| +.+..+.+.
T Consensus 5 l~l~CLA~aavF~~a~va--~a~~~~f~V 31 (37)
T PF11131_consen 5 LFLICLAAAAVFTAAGVA--NAPAHQFHV 31 (37)
T ss_pred HHHHHHHHHHHHHhhccc--CCchhhhhH
Confidence 356799999999998874 444444443
No 215
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.37 E-value=1e+02 Score=20.99 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015949 11 GFFTRVVVVTLLVLFAGLM 29 (397)
Q Consensus 11 ~~~~~ilii~~li~lsa~f 29 (397)
-+|-.++++++.+++|.+|
T Consensus 19 Ly~GlLlifvl~vLFssYf 37 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4566666667778888766
No 216
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=22.32 E-value=59 Score=33.82 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHhhccccceecccceeCccEEEEeCCCChhHHHHHHHHhcCCCcccc
Q 015949 185 GELTRDETTIITGALELSEKTARDAMTPASETFAIDVSFKLDRNLMRLVLEKGHSRVPV 243 (397)
Q Consensus 185 G~l~~~E~~ii~~~l~l~~~~V~diMtPr~~v~~L~~~~tl~~e~l~~i~~~g~SR~PV 243 (397)
|.++..+-+.+ +=..+.+.|+|||+. ++-+.+.+++ ++-+.+.++.--++||
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~i 207 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPV 207 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcce
Confidence 34444444444 445677999999988 7889999998 8888888888999999
No 217
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). There are several classes of these bacterial proteins: they include bacteriorhodopsin and archaerhodopsin, which are light-driven proton pumps; halorhodopsin, a light-driven chloride pump; and sensory rhodopsin, which mediates both photoattractant (in the red) and photophobic (in the UV) responses.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 3QBI_B 3QBK_D 3QBL_D 3QBG_B 3AM6_D 1UAZ_B 1E12_A 2JAF_A 2JAG_A 3UG9_A ....
Probab=22.27 E-value=6.3e+02 Score=23.41 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHhhhHHHHHHHhhHH-HHHhHhHHHHHHHHHHHHHHHHhhhH
Q 015949 108 ILSFGEIIPQAVCARYGLA-IGAKVAPFVQILVRICFPIAFPVSKL 152 (397)
Q Consensus 108 ilifGEiiPK~la~~~~~~-i~~~~a~~l~~~~~l~~Pl~~~l~~l 152 (397)
-.++++. .|+. .+.+.+ -.......+-.+.|..||++|.++..
T Consensus 140 y~l~~~~-~~~a-~~~~~~~~~~~~l~~~~~~~W~~YPi~w~l~~~ 183 (222)
T PF01036_consen 140 YLLFGPL-RRAA-SAVSPSVGLYNKLRNLTVVLWILYPIVWLLSEG 183 (222)
T ss_dssp HHHHTHH-HHHH-TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHH-HHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444544 4443 344444 33334455566678899999987654
No 218
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=21.92 E-value=85 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=25.1
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
+..+++.+++.++|+++.-...++|+.++.
T Consensus 9 ~~~~~~~~tl~~ll~~l~~~~~~vav~~N~ 38 (65)
T PRK05863 9 QVEVDEQTTVAALLDSLGFPEKGIAVAVDW 38 (65)
T ss_pred EEEcCCCCcHHHHHHHcCCCCCcEEEEECC
Confidence 445778899999999999888888888764
No 219
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=21.69 E-value=3.5e+02 Score=28.18 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhHHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHhhhHhhhhhcCCCcccccHHHHHH
Q 015949 105 VTLILSFGEIIPQAVCARYGLAIGAKVAPFVQILVRICFPIAFPVSKLLDLLLGKGNEALFRRAELKT 172 (397)
Q Consensus 105 t~lilifGEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~Pl~~~l~~l~~~llg~~~~~~~s~eEL~~ 172 (397)
.++.+.++|..-|.+-.-|... -++-+ +.....+.|+.++++|+.|++=|.++- .++.|.+++
T Consensus 146 ~i~~l~~aD~~a~~~q~~~glp---Gis~p-h~~~~~~~pia~~~n~i~dkIPglnki-~~d~~~i~k 208 (407)
T TIGR00827 146 AAVALKVADWTAPMVSNFYELE---GISIP-TGSTISYAPGIVLVDAIIEKIPGIKHW-NADADTIQR 208 (407)
T ss_pred HHHHHHHHHHhcHHHHHhcCCC---Ceeec-chhhHhhhhHHHHHHHHHHhCcCcccC-CCCHHHHhh
Confidence 4567888888877666555433 11112 555566779999999999998554331 134455443
No 220
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.39 E-value=4.3e+02 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHhhcccc
Q 015949 186 ELTRDETTIITGALELSE 203 (397)
Q Consensus 186 ~l~~~E~~ii~~~l~l~~ 203 (397)
.++++|+.++.-.+.=+.
T Consensus 78 ~Lt~~EkavL~~~~~~~~ 95 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN 95 (151)
T ss_pred hCCHHHHHHHHHHHHCCC
Confidence 489999998877765543
No 221
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=21.29 E-value=7e+02 Score=24.58 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCchhHHHHHHHHHHHhcchhHHHHH
Q 015949 20 TLLVLFAGLMSGLTLGLMSMSLVDLEVLANSGTPSDRKHASKILPVVRRQHLLLCTLL 77 (397)
Q Consensus 20 ~~li~lsa~fSg~E~Al~Sl~~~~L~~l~~~g~~~~~~~a~~il~l~~~~~~lL~til 77 (397)
+++.+.|+++.+.-..+...+..|.+. .+.+. ...-.+.+++|-+....++
T Consensus 9 v~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~----~~~~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 9 VLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRA----GSGGRSYLRRPLWWIGLLL 59 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccc----cchhhHHHhhHHHHHHHHH
Confidence 345566888888777766555444433 12211 1233467788877766654
No 222
>PF14044 NETI: NETI protein
Probab=20.51 E-value=1.1e+02 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.1
Q ss_pred EEEeCCCChhHHHHHHHHhcCCCcccc----hhhccc
Q 015949 217 FAIDVSFKLDRNLMRLVLEKGHSRVPV----KNLLTI 249 (397)
Q Consensus 217 ~~L~~~~tl~~e~l~~i~~~g~SR~PV----kDll~~ 249 (397)
|.+..+.|++ +.++.|.+.||. || |-++..
T Consensus 2 FeV~enETI~-~CL~RM~~eGY~--PvrR~EkPiF~e 35 (57)
T PF14044_consen 2 FEVEENETIS-DCLARMKKEGYM--PVRRIEKPIFKE 35 (57)
T ss_pred eeccCCCcHH-HHHHHHHHcCCC--ceeeccccceEE
Confidence 4577899998 999999999997 77 555543
No 223
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.30 E-value=1e+02 Score=22.79 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.2
Q ss_pred CcEecCCCCHHHHHHHHHhCCceEEEEEec
Q 015949 265 IPRVSETMPLYDILNEFQKGHSHMAVVVRH 294 (397)
Q Consensus 265 ~~~Vpe~~~l~~lL~~fq~~~~hmAiVVDE 294 (397)
..-+++.+++.++|+++.-.....|+.+|.
T Consensus 7 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~ 36 (64)
T TIGR01683 7 PVEVEDGLTLAALLESLGLDPRRVAVAVNG 36 (64)
T ss_pred EEEcCCCCcHHHHHHHcCCCCCeEEEEECC
Confidence 345688899999999998777777766653
Done!