Query 015950
Match_columns 397
No_of_seqs 308 out of 1668
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0770 MurF UDP-N-acetylmuram 100.0 7E-74 1.5E-78 572.2 39.1 358 26-395 2-365 (451)
2 PRK10773 murF UDP-N-acetylmura 100.0 2E-73 4.4E-78 578.7 41.8 355 27-395 4-363 (453)
3 PRK14093 UDP-N-acetylmuramoyla 100.0 6E-73 1.3E-77 578.8 41.7 357 25-393 5-376 (479)
4 TIGR01143 murF UDP-N-acetylmur 100.0 6E-71 1.3E-75 555.6 39.4 328 51-392 1-331 (417)
5 PRK11930 putative bifunctional 100.0 5.4E-67 1.2E-71 566.2 42.4 353 26-393 2-367 (822)
6 PRK00139 murE UDP-N-acetylmura 100.0 2E-66 4.3E-71 528.6 37.3 334 27-393 4-356 (460)
7 TIGR01085 murE UDP-N-acetylmur 100.0 3E-66 6.6E-71 528.3 35.7 334 46-393 4-365 (464)
8 PRK11929 putative bifunctional 100.0 8.5E-65 1.8E-69 558.1 41.0 336 46-392 526-870 (958)
9 PRK11929 putative bifunctional 100.0 8.8E-63 1.9E-67 542.2 38.5 351 28-393 11-391 (958)
10 PRK14022 UDP-N-acetylmuramoyla 100.0 4.2E-62 9.1E-67 499.5 34.9 320 45-393 33-373 (481)
11 COG0769 MurE UDP-N-acetylmuram 100.0 2.8E-56 6.1E-61 450.3 30.6 333 47-393 11-366 (475)
12 COG0773 MurC UDP-N-acetylmuram 100.0 8.9E-45 1.9E-49 356.1 33.0 267 100-393 90-360 (459)
13 PRK00421 murC UDP-N-acetylmura 100.0 4.9E-44 1.1E-48 364.5 32.9 249 132-393 107-358 (461)
14 PRK03806 murD UDP-N-acetylmura 100.0 3.5E-44 7.5E-49 363.6 30.7 284 52-392 59-344 (438)
15 TIGR01081 mpl UDP-N-acetylmura 100.0 1.3E-43 2.9E-48 360.1 32.8 246 133-393 103-357 (448)
16 PRK00141 murD UDP-N-acetylmura 100.0 2.9E-43 6.2E-48 359.4 30.0 229 133-381 122-356 (473)
17 PRK04663 murD UDP-N-acetylmura 100.0 3.9E-43 8.5E-48 355.6 29.7 238 132-392 108-346 (438)
18 PRK01368 murD UDP-N-acetylmura 100.0 7.3E-43 1.6E-47 353.9 31.6 234 132-381 104-342 (454)
19 TIGR01087 murD UDP-N-acetylmur 100.0 5.6E-43 1.2E-47 354.3 29.9 230 131-381 101-331 (433)
20 PRK01710 murD UDP-N-acetylmura 100.0 1.9E-43 4E-48 359.8 25.9 237 131-392 116-357 (458)
21 PRK01390 murD UDP-N-acetylmura 100.0 4.6E-43 1E-47 357.4 28.1 272 86-380 65-353 (460)
22 TIGR01082 murC UDP-N-acetylmur 100.0 2.8E-42 6.1E-47 350.4 33.6 249 132-393 99-352 (448)
23 PRK04308 murD UDP-N-acetylmura 100.0 1.7E-42 3.7E-47 351.8 30.8 264 85-381 66-342 (445)
24 COG0771 MurD UDP-N-acetylmuram 100.0 1.1E-42 2.4E-47 344.8 27.9 240 121-381 100-343 (448)
25 PRK02006 murD UDP-N-acetylmura 100.0 3.8E-42 8.3E-47 353.7 31.4 324 27-380 20-386 (498)
26 PRK03369 murD UDP-N-acetylmura 100.0 3.5E-42 7.6E-47 352.5 29.7 229 133-380 118-349 (488)
27 PRK03803 murD UDP-N-acetylmura 100.0 8E-42 1.7E-46 347.2 31.8 241 132-392 108-351 (448)
28 PRK01438 murD UDP-N-acetylmura 100.0 5.9E-42 1.3E-46 351.1 29.0 237 129-380 119-366 (480)
29 PRK14106 murD UDP-N-acetylmura 100.0 3.5E-42 7.5E-47 350.1 25.9 243 121-381 99-346 (450)
30 PRK02472 murD UDP-N-acetylmura 100.0 3E-41 6.4E-46 343.0 30.4 240 132-393 108-350 (447)
31 PRK04690 murD UDP-N-acetylmura 100.0 7.2E-41 1.6E-45 341.1 32.5 238 132-393 115-354 (468)
32 PRK02705 murD UDP-N-acetylmura 100.0 3.8E-41 8.3E-46 343.3 30.3 242 131-392 108-356 (459)
33 TIGR01499 folC folylpolyglutam 100.0 1.3E-41 2.9E-46 340.4 24.1 255 120-393 6-312 (397)
34 PRK14573 bifunctional D-alanyl 100.0 1.3E-40 2.9E-45 359.7 33.3 242 133-393 105-350 (809)
35 PRK00683 murD UDP-N-acetylmura 100.0 2.9E-40 6.2E-45 332.8 21.8 249 61-380 60-311 (418)
36 TIGR02068 cya_phycin_syn cyano 100.0 4.8E-40 1E-44 355.4 24.3 274 114-392 459-764 (864)
37 PLN02913 dihydrofolate synthet 100.0 3.4E-38 7.4E-43 323.2 26.5 269 113-394 60-404 (510)
38 PRK10846 bifunctional folylpol 100.0 1.4E-37 3E-42 312.9 25.5 254 118-394 35-332 (416)
39 PRK03815 murD UDP-N-acetylmura 100.0 7.7E-37 1.7E-41 304.9 25.5 217 132-392 89-305 (401)
40 PF08245 Mur_ligase_M: Mur lig 100.0 2.9E-36 6.2E-41 271.3 16.9 186 137-326 1-188 (188)
41 COG0285 FolC Folylpolyglutamat 100.0 9E-35 1.9E-39 287.7 25.5 259 115-394 27-337 (427)
42 PLN02881 tetrahydrofolylpolygl 100.0 1.1E-32 2.3E-37 279.3 25.5 236 113-382 44-351 (530)
43 PRK14016 cyanophycin synthetas 100.0 3.2E-32 6.9E-37 289.6 20.9 220 129-352 477-726 (727)
44 KOG2525 Folylpolyglutamate syn 99.9 1.3E-24 2.9E-29 212.6 16.7 237 113-382 55-358 (496)
45 PF01225 Mur_ligase: Mur ligas 99.4 3.1E-15 6.7E-20 116.4 -3.6 72 46-125 2-82 (83)
46 PF02875 Mur_ligase_C: Mur lig 98.9 2.1E-09 4.5E-14 85.0 6.2 47 346-393 1-48 (91)
47 COG1703 ArgK Putative periplas 95.7 0.19 4.1E-06 47.9 12.3 120 124-258 44-204 (323)
48 PF03308 ArgK: ArgK protein; 92.1 1.7 3.6E-05 40.9 10.5 122 121-256 19-180 (266)
49 PRK06696 uridine kinase; Valid 91.8 0.45 9.7E-06 43.7 6.5 48 115-162 4-54 (223)
50 PRK00652 lpxK tetraacyldisacch 91.8 0.84 1.8E-05 44.6 8.5 34 129-162 46-83 (325)
51 PF04613 LpxD: UDP-3-O-[3-hydr 91.6 0.31 6.6E-06 36.4 4.1 55 56-124 14-71 (72)
52 PHA02519 plasmid partition pro 91.3 0.33 7.2E-06 48.6 5.3 50 113-162 86-139 (387)
53 PRK13705 plasmid-partitioning 90.8 0.38 8.3E-06 48.2 5.2 50 113-162 86-139 (388)
54 TIGR03172 probable selenium-de 90.6 0.3 6.5E-06 45.3 3.9 33 134-166 1-33 (232)
55 PF00485 PRK: Phosphoribulokin 90.1 0.25 5.4E-06 44.3 3.0 27 134-160 1-29 (194)
56 PRK14489 putative bifunctional 90.1 0.64 1.4E-05 46.2 6.1 52 111-162 183-237 (366)
57 TIGR03815 CpaE_hom_Actino heli 89.3 1.7 3.8E-05 42.2 8.4 72 73-162 52-126 (322)
58 TIGR01007 eps_fam capsular exo 89.3 0.83 1.8E-05 41.1 5.8 34 129-162 14-50 (204)
59 PRK00892 lpxD UDP-3-O-[3-hydro 89.1 2 4.3E-05 42.3 8.7 85 26-125 2-91 (343)
60 PRK13869 plasmid-partitioning 89.1 0.52 1.1E-05 47.6 4.7 37 126-162 115-154 (405)
61 PF03205 MobB: Molybdopterin g 88.8 2.4 5.2E-05 36.0 7.9 30 133-162 1-32 (140)
62 TIGR03018 pepcterm_TyrKin exop 88.8 1.4 3E-05 39.9 6.8 50 113-162 10-69 (207)
63 PRK15453 phosphoribulokinase; 88.3 0.65 1.4E-05 44.3 4.4 31 130-160 3-35 (290)
64 TIGR03029 EpsG chain length de 88.0 1.4 3E-05 41.7 6.6 49 114-162 83-136 (274)
65 COG1044 LpxD UDP-3-O-[3-hydrox 88.0 1.6 3.4E-05 42.5 6.8 88 25-127 2-94 (338)
66 PRK07667 uridine kinase; Provi 87.9 1.2 2.6E-05 39.9 5.9 30 132-161 17-48 (193)
67 COG0769 MurE UDP-N-acetylmuram 87.3 0.3 6.5E-06 50.2 1.7 96 130-227 62-161 (475)
68 COG1936 Predicted nucleotide k 86.9 0.74 1.6E-05 40.5 3.6 26 133-162 1-28 (180)
69 COG1763 MobB Molybdopterin-gua 86.7 0.88 1.9E-05 39.7 4.0 31 132-162 2-34 (161)
70 PRK05439 pantothenate kinase; 86.4 1.7 3.6E-05 42.2 6.1 40 117-156 70-112 (311)
71 cd01983 Fer4_NifH The Fer4_Nif 86.0 0.99 2.2E-05 34.4 3.7 40 135-194 2-43 (99)
72 TIGR01853 lipid_A_lpxD UDP-3-O 85.6 2.6 5.6E-05 41.2 7.1 80 31-125 1-84 (324)
73 COG2403 Predicted GTPase [Gene 85.6 0.91 2E-05 44.6 3.8 32 131-162 125-159 (449)
74 COG0132 BioD Dethiobiotin synt 85.2 1.2 2.7E-05 40.9 4.4 31 132-162 2-35 (223)
75 cd03109 DTBS Dethiobiotin synt 85.0 3.6 7.7E-05 34.6 6.8 68 136-219 4-79 (134)
76 PRK14494 putative molybdopteri 84.3 1.4 3.1E-05 40.8 4.4 31 132-162 1-33 (229)
77 TIGR03453 partition_RepA plasm 82.9 1.7 3.8E-05 43.4 4.7 34 129-162 101-137 (387)
78 cd02042 ParA ParA and ParB of 82.7 12 0.00027 29.2 8.9 47 134-195 4-50 (104)
79 COG0552 FtsY Signal recognitio 82.6 1.3 2.9E-05 43.0 3.5 31 132-162 139-171 (340)
80 TIGR00041 DTMP_kinase thymidyl 82.5 2.2 4.8E-05 37.9 4.8 33 132-164 3-37 (195)
81 PF02606 LpxK: Tetraacyldisacc 82.1 6.7 0.00014 38.4 8.3 34 129-162 32-69 (326)
82 KOG0780 Signal recognition par 81.5 3.9 8.4E-05 40.6 6.3 80 135-215 107-220 (483)
83 cd02028 UMPK_like Uridine mono 81.5 1.7 3.6E-05 38.5 3.6 28 134-161 1-30 (179)
84 PF06564 YhjQ: YhjQ protein; 81.4 1.6 3.5E-05 40.7 3.6 30 134-163 6-35 (243)
85 COG4240 Predicted kinase [Gene 81.3 3.9 8.5E-05 37.8 5.9 49 113-162 32-83 (300)
86 COG0572 Udk Uridine kinase [Nu 81.2 1.5 3.2E-05 40.2 3.2 25 131-155 7-33 (218)
87 PRK13235 nifH nitrogenase redu 81.1 2 4.3E-05 40.7 4.2 30 133-162 2-33 (274)
88 TIGR00682 lpxK tetraacyldisacc 80.9 3 6.6E-05 40.5 5.4 34 129-162 25-62 (311)
89 PRK13232 nifH nitrogenase redu 80.9 2.2 4.7E-05 40.4 4.4 30 133-162 2-33 (273)
90 COG0237 CoaE Dephospho-CoA kin 80.7 1.6 3.5E-05 39.5 3.3 27 132-162 2-30 (201)
91 cd02029 PRK_like Phosphoribulo 80.6 1.8 3.8E-05 41.1 3.5 28 134-161 1-30 (277)
92 TIGR03371 cellulose_yhjQ cellu 80.4 2.3 5E-05 39.2 4.3 31 132-162 1-34 (246)
93 cd03116 MobB Molybdenum is an 80.4 2.6 5.6E-05 36.7 4.4 31 132-162 1-33 (159)
94 TIGR01425 SRP54_euk signal rec 80.2 15 0.00033 37.3 10.3 31 132-162 100-132 (429)
95 PRK14493 putative bifunctional 80.0 2.7 5.8E-05 40.1 4.6 29 132-161 1-31 (274)
96 COG2894 MinD Septum formation 79.9 1.9 4.1E-05 39.6 3.4 30 133-162 3-35 (272)
97 PRK09435 membrane ATPase/prote 79.6 5.4 0.00012 39.1 6.7 34 129-162 53-88 (332)
98 COG0125 Tmk Thymidylate kinase 79.0 3.3 7.2E-05 37.7 4.7 42 132-173 3-46 (208)
99 TIGR00064 ftsY signal recognit 78.9 3.1 6.8E-05 39.5 4.8 32 131-162 71-104 (272)
100 PRK13849 putative crown gall t 78.8 2.8 6.2E-05 38.8 4.3 30 133-162 2-34 (231)
101 PRK10037 cell division protein 78.7 2.9 6.2E-05 39.0 4.4 30 133-162 2-34 (250)
102 PF00448 SRP54: SRP54-type pro 78.5 2.1 4.6E-05 38.6 3.3 27 134-161 6-32 (196)
103 PRK01906 tetraacyldisaccharide 77.7 5 0.00011 39.5 5.8 38 129-166 53-95 (338)
104 cd01672 TMPK Thymidine monopho 77.6 3.5 7.6E-05 36.3 4.5 30 134-163 2-33 (200)
105 cd02117 NifH_like This family 77.3 2.4 5.2E-05 38.5 3.3 29 134-162 2-32 (212)
106 PRK11889 flhF flagellar biosyn 77.1 36 0.00078 34.4 11.6 31 132-162 241-273 (436)
107 COG1618 Predicted nucleotide k 77.1 3.3 7E-05 36.2 3.8 31 133-163 6-38 (179)
108 PRK14495 putative molybdopteri 77.0 3.2 7E-05 42.1 4.4 31 132-162 1-33 (452)
109 cd02040 NifH NifH gene encodes 76.5 2.9 6.3E-05 39.2 3.8 25 138-162 9-33 (270)
110 PF01656 CbiA: CobQ/CobB/MinD/ 76.5 2.8 6.1E-05 36.9 3.5 29 134-162 3-31 (195)
111 PRK00784 cobyric acid synthase 76.4 3 6.6E-05 43.1 4.2 29 133-161 3-34 (488)
112 TIGR00554 panK_bact pantothena 76.2 4.8 0.0001 38.7 5.2 26 131-156 61-88 (290)
113 TIGR00750 lao LAO/AO transport 75.8 14 0.00031 35.5 8.4 33 129-161 31-65 (300)
114 PRK13230 nitrogenase reductase 75.7 3.4 7.3E-05 39.2 4.0 30 133-162 2-33 (279)
115 PHA02518 ParA-like protein; Pr 75.4 3 6.5E-05 37.3 3.4 28 135-162 6-33 (211)
116 PLN02924 thymidylate kinase 75.2 4.9 0.00011 36.9 4.8 36 128-163 12-49 (220)
117 PRK09270 nucleoside triphospha 74.9 6.9 0.00015 36.0 5.8 32 129-160 30-63 (229)
118 cd02033 BchX Chlorophyllide re 74.8 4.7 0.0001 39.5 4.8 33 130-162 29-63 (329)
119 PRK10867 signal recognition pa 74.6 26 0.00056 35.7 10.2 31 132-162 100-133 (433)
120 PRK14974 cell division protein 74.4 4.6 0.0001 39.6 4.6 32 131-162 139-172 (336)
121 TIGR00176 mobB molybdopterin-g 74.3 4.1 8.9E-05 35.2 3.9 29 134-162 1-31 (155)
122 cd02025 PanK Pantothenate kina 73.9 3.7 8E-05 37.7 3.7 23 134-156 1-25 (220)
123 PRK10751 molybdopterin-guanine 73.8 5.4 0.00012 35.2 4.5 33 130-162 4-38 (173)
124 KOG3347 Predicted nucleotide k 73.4 3.1 6.7E-05 35.9 2.7 24 131-154 6-31 (176)
125 TIGR02016 BchX chlorophyllide 72.6 4.5 9.8E-05 38.9 4.1 25 138-162 8-32 (296)
126 PRK00698 tmk thymidylate kinas 72.3 6.5 0.00014 35.0 4.9 32 132-163 3-36 (205)
127 PRK00889 adenylylsulfate kinas 72.2 5.9 0.00013 34.5 4.5 31 131-161 3-35 (175)
128 cd02023 UMPK Uridine monophosp 72.1 3.1 6.7E-05 37.2 2.6 21 134-154 1-23 (198)
129 cd02036 MinD Bacterial cell di 72.0 4.5 9.7E-05 35.0 3.6 29 134-162 4-32 (179)
130 PRK14723 flhF flagellar biosyn 72.0 11 0.00024 41.0 7.1 30 132-161 185-218 (767)
131 PF13207 AAA_17: AAA domain; P 72.0 3.6 7.8E-05 33.3 2.8 25 134-161 1-27 (121)
132 COG1072 CoaA Panthothenate kin 71.7 4.3 9.3E-05 38.5 3.5 30 131-160 81-112 (283)
133 TIGR01281 DPOR_bchL light-inde 71.4 3.5 7.7E-05 38.7 3.0 25 138-162 8-32 (268)
134 PRK13234 nifH nitrogenase redu 71.4 5.3 0.00011 38.4 4.2 32 131-162 3-36 (295)
135 TIGR01968 minD_bact septum sit 71.0 5.5 0.00012 36.9 4.2 30 133-162 2-34 (261)
136 PF06309 Torsin: Torsin; Inte 70.8 11 0.00024 31.4 5.4 43 118-160 38-83 (127)
137 PTZ00301 uridine kinase; Provi 70.3 4.7 0.0001 36.8 3.4 53 329-382 152-205 (210)
138 TIGR02880 cbbX_cfxQ probable R 70.1 3.8 8.2E-05 39.2 2.9 27 132-159 61-87 (284)
139 PRK11670 antiporter inner memb 70.0 6.1 0.00013 39.4 4.4 31 132-162 107-140 (369)
140 PRK12374 putative dithiobiotin 69.9 6.4 0.00014 36.3 4.3 29 134-162 4-35 (231)
141 PRK05480 uridine/cytidine kina 69.6 5.1 0.00011 36.1 3.5 24 131-154 5-30 (209)
142 CHL00072 chlL photochlorophyll 69.6 4.2 9.1E-05 39.0 3.1 25 138-162 8-32 (290)
143 cd02032 Bchl_like This family 69.5 4.9 0.00011 37.7 3.5 25 138-162 8-32 (267)
144 TIGR01287 nifH nitrogenase iro 69.1 6.2 0.00013 37.2 4.1 28 135-162 3-32 (275)
145 PRK10416 signal recognition pa 68.4 7.8 0.00017 37.8 4.7 31 132-162 114-146 (318)
146 PRK07933 thymidylate kinase; V 68.3 7.9 0.00017 35.3 4.5 31 134-164 2-34 (213)
147 PTZ00451 dephospho-CoA kinase; 67.9 4.8 0.0001 37.7 3.0 28 132-162 1-30 (244)
148 PRK13185 chlL protochlorophyll 67.9 4.8 0.0001 37.9 3.1 30 133-162 3-34 (270)
149 PRK03846 adenylylsulfate kinas 67.8 9.3 0.0002 34.2 4.8 32 130-161 22-55 (198)
150 PF13521 AAA_28: AAA domain; P 67.6 3.5 7.5E-05 35.6 1.9 24 135-162 2-27 (163)
151 PRK12726 flagellar biosynthesi 67.4 39 0.00085 33.9 9.3 32 131-162 205-238 (407)
152 PRK05380 pyrG CTP synthetase; 67.3 14 0.00031 38.4 6.5 31 132-162 2-36 (533)
153 PRK09841 cryptic autophosphory 67.1 12 0.00025 40.9 6.2 48 115-162 512-564 (726)
154 PF13500 AAA_26: AAA domain; P 66.8 7 0.00015 34.9 3.8 29 134-162 2-33 (199)
155 COG3640 CooC CO dehydrogenase 66.3 7 0.00015 36.3 3.6 29 134-162 2-33 (255)
156 COG1797 CobB Cobyrinic acid a, 65.8 13 0.00029 37.5 5.7 27 135-161 3-32 (451)
157 PF01121 CoaE: Dephospho-CoA k 65.7 4.8 0.0001 35.8 2.5 25 134-162 2-28 (180)
158 PRK08233 hypothetical protein; 65.7 5.4 0.00012 34.7 2.8 23 132-154 3-27 (182)
159 COG3172 NadR Predicted ATPase/ 65.6 5.9 0.00013 34.6 2.8 23 132-154 8-32 (187)
160 PRK01077 cobyrinic acid a,c-di 65.3 7.4 0.00016 39.8 4.1 87 132-218 3-124 (451)
161 PRK13973 thymidylate kinase; P 65.0 12 0.00025 34.1 4.9 32 133-164 4-37 (213)
162 PF01583 APS_kinase: Adenylyls 64.9 9.5 0.00021 33.1 4.0 32 132-163 2-35 (156)
163 COG0541 Ffh Signal recognition 64.8 42 0.0009 34.1 9.0 31 132-162 100-132 (451)
164 PF10662 PduV-EutP: Ethanolami 64.6 31 0.00067 29.5 7.0 100 134-240 3-117 (143)
165 cd02034 CooC The accessory pro 64.4 8.2 0.00018 31.6 3.4 24 139-162 8-31 (116)
166 KOG3308 Uncharacterized protei 64.2 5.6 0.00012 36.0 2.5 24 132-155 4-29 (225)
167 PF13614 AAA_31: AAA domain; P 64.0 8.8 0.00019 32.5 3.7 29 134-162 2-33 (157)
168 TIGR00455 apsK adenylylsulfate 63.9 14 0.00031 32.4 5.2 32 130-161 16-49 (184)
169 cd02037 MRP-like MRP (Multiple 63.0 8.5 0.00019 33.3 3.5 27 136-162 6-32 (169)
170 PF02223 Thymidylate_kin: Thym 62.9 5.7 0.00012 35.0 2.4 27 141-167 7-33 (186)
171 TIGR01969 minD_arch cell divis 62.0 8.6 0.00019 35.4 3.5 27 136-162 7-33 (251)
172 PRK14491 putative bifunctional 61.7 11 0.00025 40.0 4.7 34 129-162 7-42 (597)
173 COG3954 PrkB Phosphoribulokina 61.6 5.3 0.00011 35.9 1.9 32 130-161 3-36 (289)
174 PRK11519 tyrosine kinase; Prov 61.0 18 0.0004 39.3 6.3 48 115-162 507-559 (719)
175 cd02019 NK Nucleoside/nucleoti 60.8 8.7 0.00019 28.0 2.7 21 134-154 1-23 (69)
176 COG1192 Soj ATPases involved i 60.5 9.4 0.0002 35.6 3.6 29 134-162 7-36 (259)
177 PRK13236 nitrogenase reductase 60.5 8.6 0.00019 36.9 3.3 32 131-162 5-38 (296)
178 TIGR00379 cobB cobyrinic acid 60.0 12 0.00025 38.4 4.4 84 135-218 4-120 (449)
179 cd03115 SRP The signal recogni 59.7 14 0.0003 32.0 4.3 29 134-162 2-32 (173)
180 PRK05632 phosphate acetyltrans 59.4 50 0.0011 35.8 9.2 84 135-218 7-116 (684)
181 COG1663 LpxK Tetraacyldisaccha 58.9 28 0.0006 34.1 6.4 34 129-162 44-81 (336)
182 cd02024 NRK1 Nicotinamide ribo 58.8 7.1 0.00015 34.9 2.3 21 134-154 1-23 (187)
183 PF07015 VirC1: VirC1 protein; 58.6 9.2 0.0002 35.4 3.0 24 139-162 11-34 (231)
184 PRK14733 coaE dephospho-CoA ki 58.4 9 0.0002 34.8 2.9 28 132-162 6-35 (204)
185 COG4088 Predicted nucleotide k 57.9 12 0.00026 34.2 3.5 31 132-162 1-33 (261)
186 PRK13231 nitrogenase reductase 57.8 4.8 0.0001 37.8 1.0 29 133-162 3-33 (264)
187 COG0529 CysC Adenylylsulfate k 57.7 30 0.00066 30.8 5.8 37 130-166 21-59 (197)
188 PF08433 KTI12: Chromatin asso 57.5 12 0.00026 35.5 3.7 31 132-162 1-33 (270)
189 PLN03046 D-glycerate 3-kinase; 57.4 22 0.00048 36.1 5.6 31 131-161 211-243 (460)
190 cd02026 PRK Phosphoribulokinas 57.2 7.8 0.00017 36.9 2.4 28 134-161 1-30 (273)
191 PRK00090 bioD dithiobiotin syn 57.2 16 0.00035 33.1 4.5 22 141-162 11-32 (222)
192 PLN02348 phosphoribulokinase 57.1 16 0.00034 36.7 4.6 26 131-156 48-75 (395)
193 PRK07429 phosphoribulokinase; 56.8 11 0.00024 36.8 3.4 28 131-158 7-36 (327)
194 PLN02796 D-glycerate 3-kinase 56.8 25 0.00055 34.6 5.9 49 113-161 77-131 (347)
195 PRK14734 coaE dephospho-CoA ki 56.5 11 0.00023 34.1 3.0 26 133-162 2-29 (200)
196 TIGR02640 gas_vesic_GvpN gas v 54.6 12 0.00027 35.1 3.3 44 113-161 6-49 (262)
197 PRK13768 GTPase; Provisional 54.6 17 0.00037 34.1 4.2 29 134-162 4-34 (253)
198 PLN02422 dephospho-CoA kinase 54.6 12 0.00026 34.8 3.0 26 133-162 2-29 (232)
199 KOG0991 Replication factor C, 54.5 23 0.0005 33.1 4.8 41 110-155 31-73 (333)
200 PRK00771 signal recognition pa 54.5 17 0.00037 37.0 4.4 31 132-162 95-127 (437)
201 PF07755 DUF1611: Protein of u 54.3 14 0.0003 35.7 3.5 157 73-239 50-251 (301)
202 PF09140 MipZ: ATPase MipZ; I 54.3 12 0.00026 35.1 3.0 30 134-163 2-34 (261)
203 TIGR00235 udk uridine kinase. 54.1 14 0.0003 33.3 3.4 25 131-155 5-31 (207)
204 cd02022 DPCK Dephospho-coenzym 54.0 13 0.00029 32.6 3.2 25 134-162 1-27 (179)
205 PF01935 DUF87: Domain of unkn 53.7 13 0.00029 33.8 3.3 29 132-161 26-55 (229)
206 PRK10818 cell division inhibit 53.7 15 0.00032 34.5 3.6 30 133-162 3-35 (270)
207 KOG2749 mRNA cleavage and poly 53.7 37 0.0008 33.6 6.2 49 113-161 84-134 (415)
208 PRK13233 nifH nitrogenase redu 53.6 12 0.00025 35.4 2.9 30 133-162 3-35 (275)
209 PRK00081 coaE dephospho-CoA ki 53.5 12 0.00027 33.4 3.0 27 132-162 2-30 (194)
210 TIGR01033 DNA-binding regulato 52.9 60 0.0013 30.2 7.4 68 319-387 49-123 (238)
211 cd03111 CpaE_like This protein 52.4 17 0.00038 28.9 3.4 47 135-194 5-52 (106)
212 PRK14730 coaE dephospho-CoA ki 52.2 15 0.00033 32.9 3.3 27 133-162 2-30 (195)
213 KOG1805 DNA replication helica 51.9 18 0.0004 40.0 4.3 48 111-163 671-718 (1100)
214 PRK05541 adenylylsulfate kinas 51.8 30 0.00065 30.0 5.1 32 130-161 5-38 (176)
215 CHL00175 minD septum-site dete 51.8 15 0.00034 34.6 3.5 31 132-162 15-48 (281)
216 KOG3022 Predicted ATPase, nucl 51.1 15 0.00032 35.0 3.0 30 133-162 48-80 (300)
217 TIGR00959 ffh signal recogniti 51.1 1E+02 0.0022 31.4 9.4 31 132-162 99-132 (428)
218 PRK14709 hypothetical protein; 51.1 29 0.00064 35.7 5.6 40 113-154 185-229 (469)
219 PF07931 CPT: Chloramphenicol 50.8 11 0.00024 33.3 2.1 22 133-154 2-25 (174)
220 TIGR01613 primase_Cterm phage/ 50.5 33 0.00072 32.9 5.6 19 135-154 82-100 (304)
221 PRK12377 putative replication 50.3 34 0.00075 32.0 5.5 30 133-162 102-133 (248)
222 PRK08099 bifunctional DNA-bind 50.1 22 0.00048 35.8 4.4 25 130-154 217-243 (399)
223 PRK06547 hypothetical protein; 49.3 31 0.00067 30.3 4.8 25 130-154 13-39 (172)
224 COG4917 EutP Ethanolamine util 49.2 1E+02 0.0022 26.0 7.2 70 181-257 61-133 (148)
225 KOG1324 Dihydrofolate reductas 49.2 22 0.00048 31.5 3.6 48 341-392 61-117 (190)
226 TIGR00347 bioD dethiobiotin sy 48.9 20 0.00042 30.9 3.4 25 139-163 7-31 (166)
227 cd00477 FTHFS Formyltetrahydro 48.7 24 0.00053 36.4 4.4 33 130-162 36-74 (524)
228 PRK14490 putative bifunctional 48.6 24 0.00052 35.0 4.4 32 130-162 3-36 (369)
229 KOG3354 Gluconate kinase [Carb 48.3 16 0.00034 31.9 2.5 20 134-154 17-36 (191)
230 PRK14731 coaE dephospho-CoA ki 48.2 16 0.00036 33.0 2.9 26 133-162 6-33 (208)
231 COG3265 GntK Gluconate kinase 48.1 11 0.00023 32.6 1.5 18 136-154 2-19 (161)
232 TIGR00150 HI0065_YjeE ATPase, 47.5 45 0.00098 28.1 5.2 24 131-154 21-46 (133)
233 PF13238 AAA_18: AAA domain; P 47.4 16 0.00036 29.3 2.6 20 135-154 1-22 (129)
234 PRK03333 coaE dephospho-CoA ki 47.2 17 0.00036 36.6 3.0 20 133-152 2-23 (395)
235 PRK14732 coaE dephospho-CoA ki 47.0 14 0.00031 33.2 2.3 19 134-152 1-21 (196)
236 KOG1970 Checkpoint RAD17-RFC c 46.8 27 0.00059 36.4 4.4 44 113-161 93-138 (634)
237 COG1245 Predicted ATPase, RNas 46.2 11 0.00024 38.5 1.5 72 73-155 42-125 (591)
238 PRK13506 formate--tetrahydrofo 45.8 30 0.00065 36.2 4.6 33 130-162 52-90 (578)
239 TIGR00152 dephospho-CoA kinase 45.8 16 0.00034 32.3 2.4 26 134-162 1-28 (188)
240 PRK14964 DNA polymerase III su 45.3 1E+02 0.0022 32.0 8.4 20 134-154 40-59 (491)
241 PRK06762 hypothetical protein; 45.1 23 0.0005 30.4 3.3 22 133-154 3-26 (166)
242 PRK01184 hypothetical protein; 44.8 30 0.00065 30.3 4.0 28 132-163 1-30 (184)
243 PRK12723 flagellar biosynthesi 44.8 1.8E+02 0.0038 29.3 9.8 112 132-254 174-297 (388)
244 cd03114 ArgK-like The function 44.5 24 0.00053 30.0 3.2 28 135-162 2-31 (148)
245 PLN02974 adenosylmethionine-8- 44.0 31 0.00067 38.2 4.7 32 130-161 25-59 (817)
246 TIGR00313 cobQ cobyric acid sy 43.9 29 0.00064 35.8 4.3 25 138-162 6-31 (475)
247 PF07085 DRTGG: DRTGG domain; 43.9 85 0.0018 24.8 6.2 80 31-121 1-102 (105)
248 PRK13810 orotate phosphoribosy 43.2 28 0.00061 31.1 3.5 63 320-385 86-150 (187)
249 COG1428 Deoxynucleoside kinase 43.1 25 0.00053 32.2 3.1 23 132-154 4-28 (216)
250 COG0489 Mrp ATPases involved i 42.9 29 0.00063 32.8 3.8 32 131-162 56-90 (265)
251 COG4555 NatA ABC-type Na+ tran 42.8 22 0.00048 32.5 2.7 31 131-161 27-59 (245)
252 PF00580 UvrD-helicase: UvrD/R 42.8 21 0.00046 33.7 2.9 30 129-159 13-43 (315)
253 PRK05537 bifunctional sulfate 42.5 47 0.001 35.2 5.6 47 115-161 375-424 (568)
254 PRK13507 formate--tetrahydrofo 42.5 36 0.00077 35.6 4.5 33 130-162 61-99 (587)
255 PRK06761 hypothetical protein; 42.3 21 0.00045 34.2 2.7 30 133-162 4-35 (282)
256 COG4133 CcmA ABC-type transpor 42.1 27 0.00058 31.5 3.1 31 132-162 28-60 (209)
257 PRK12378 hypothetical protein; 41.9 1.7E+02 0.0036 27.3 8.5 69 319-387 47-120 (235)
258 COG5271 MDN1 AAA ATPase contai 41.9 33 0.00071 41.1 4.3 44 113-159 449-492 (4600)
259 COG0856 Orotate phosphoribosyl 41.7 51 0.0011 29.2 4.7 34 357-391 142-175 (203)
260 cd02027 APSK Adenosine 5'-phos 41.7 41 0.00089 28.5 4.2 28 135-162 2-31 (149)
261 COG1102 Cmk Cytidylate kinase 41.6 36 0.00078 29.9 3.7 26 134-162 2-29 (179)
262 PF13604 AAA_30: AAA domain; P 41.5 37 0.00081 30.3 4.1 31 133-163 19-51 (196)
263 cd03243 ABC_MutS_homologs The 41.3 27 0.00059 31.2 3.2 22 133-154 30-53 (202)
264 PF06418 CTP_synth_N: CTP synt 41.2 26 0.00057 33.1 3.1 30 133-162 2-35 (276)
265 TIGR01005 eps_transp_fam exopo 40.8 53 0.0011 36.0 5.9 34 129-162 543-579 (754)
266 PF03029 ATP_bind_1: Conserved 40.7 21 0.00045 33.2 2.4 22 141-162 7-28 (238)
267 PRK13976 thymidylate kinase; P 40.7 44 0.00095 30.3 4.5 31 134-164 2-36 (209)
268 KOG0635 Adenosine 5'-phosphosu 40.6 53 0.0012 28.5 4.6 46 130-176 29-76 (207)
269 PF01709 Transcrip_reg: Transc 40.6 86 0.0019 29.1 6.4 69 319-388 45-120 (234)
270 PRK04040 adenylate kinase; Pro 40.1 28 0.00062 31.0 3.1 29 132-161 2-32 (188)
271 TIGR03574 selen_PSTK L-seryl-t 40.1 34 0.00073 31.7 3.7 28 135-162 2-31 (249)
272 PRK00131 aroK shikimate kinase 40.0 34 0.00074 29.2 3.6 23 132-154 4-28 (175)
273 PF01268 FTHFS: Formate--tetra 39.9 34 0.00073 35.8 3.9 35 129-163 51-91 (557)
274 PRK12727 flagellar biosynthesi 39.8 2.9E+02 0.0063 29.2 10.6 31 131-161 349-383 (559)
275 KOG0447 Dynamin-like GTP bindi 39.8 23 0.0005 36.8 2.7 25 129-153 305-331 (980)
276 PRK08181 transposase; Validate 39.6 63 0.0014 30.6 5.5 48 114-163 92-139 (269)
277 cd03273 ABC_SMC2_euk Eukaryoti 39.4 35 0.00076 31.7 3.8 26 130-155 23-50 (251)
278 cd02038 FleN-like FleN is a me 39.1 37 0.0008 28.4 3.5 51 134-194 4-54 (139)
279 PRK06526 transposase; Provisio 39.0 46 0.001 31.3 4.4 44 117-162 85-130 (254)
280 PRK00300 gmk guanylate kinase; 38.9 28 0.00061 31.0 2.9 25 131-155 4-30 (205)
281 PRK06217 hypothetical protein; 38.9 29 0.00063 30.5 3.0 21 134-154 3-25 (183)
282 TIGR01360 aden_kin_iso1 adenyl 38.8 35 0.00075 29.7 3.5 24 131-154 2-27 (188)
283 COG1341 Predicted GTPase or GT 38.6 1.6E+02 0.0034 29.7 8.2 50 113-162 51-105 (398)
284 PRK13505 formate--tetrahydrofo 38.5 46 0.00099 34.9 4.6 33 130-162 53-91 (557)
285 PRK13886 conjugal transfer pro 38.4 37 0.00081 31.7 3.7 26 137-162 10-35 (241)
286 CHL00181 cbbX CbbX; Provisiona 38.1 24 0.00052 33.8 2.4 25 135-159 62-88 (287)
287 COG0504 PyrG CTP synthase (UTP 37.9 67 0.0015 33.1 5.6 30 133-162 2-35 (533)
288 cd00227 CPT Chloramphenicol (C 37.9 38 0.00081 29.5 3.5 23 132-154 2-26 (175)
289 PF02374 ArsA_ATPase: Anion-tr 37.7 37 0.00081 32.8 3.7 25 138-162 9-33 (305)
290 TIGR03499 FlhF flagellar biosy 37.3 45 0.00097 31.8 4.1 31 132-162 194-228 (282)
291 TIGR02322 phosphon_PhnN phosph 37.3 32 0.00069 29.9 3.0 23 133-155 2-26 (179)
292 PRK13889 conjugal transfer rel 37.2 36 0.00078 38.5 3.9 29 134-162 364-394 (988)
293 PRK06835 DNA replication prote 37.0 66 0.0014 31.5 5.3 31 132-163 186-216 (329)
294 COG0455 flhG Antiactivator of 36.9 44 0.00095 31.6 3.9 29 133-161 3-34 (262)
295 PF12846 AAA_10: AAA-like doma 36.7 33 0.00072 32.1 3.2 29 133-162 5-33 (304)
296 PRK06731 flhF flagellar biosyn 36.5 2.8E+02 0.0061 26.3 9.4 31 132-162 75-107 (270)
297 PRK00110 hypothetical protein; 36.5 1.6E+02 0.0034 27.6 7.5 63 319-382 49-118 (245)
298 PF12780 AAA_8: P-loop contain 36.2 25 0.00053 33.4 2.1 48 101-154 8-55 (268)
299 cd03223 ABCD_peroxisomal_ALDP 36.2 27 0.00058 30.2 2.3 24 132-155 27-52 (166)
300 TIGR01743 purR_Bsub pur operon 35.9 43 0.00094 31.8 3.7 66 319-386 140-223 (268)
301 TIGR00336 pyrE orotate phospho 35.8 58 0.0013 28.5 4.4 29 356-385 108-136 (173)
302 PRK13896 cobyrinic acid a,c-di 35.6 43 0.00094 34.1 3.9 28 134-161 3-33 (433)
303 PF00005 ABC_tran: ABC transpo 35.3 31 0.00068 28.2 2.5 24 132-155 11-36 (137)
304 PF05872 DUF853: Bacterial pro 34.5 29 0.00063 35.4 2.4 30 132-162 22-51 (502)
305 PRK13812 orotate phosphoribosy 34.4 54 0.0012 28.9 3.9 65 320-386 71-136 (176)
306 cd00550 ArsA_ATPase Oxyanion-t 34.3 35 0.00075 31.9 2.8 25 138-162 8-32 (254)
307 PLN02759 Formate--tetrahydrofo 34.2 55 0.0012 34.6 4.4 33 130-162 67-106 (637)
308 cd03113 CTGs CTP synthetase (C 34.2 55 0.0012 30.7 4.0 29 134-162 2-34 (255)
309 PRK13974 thymidylate kinase; P 34.0 71 0.0015 28.8 4.8 27 133-159 4-32 (212)
310 KOG3062 RNA polymerase II elon 34.0 51 0.0011 30.6 3.6 29 132-160 1-31 (281)
311 cd03229 ABC_Class3 This class 34.0 26 0.00057 30.6 1.9 24 132-155 26-51 (178)
312 PLN02293 adenine phosphoribosy 33.8 55 0.0012 29.2 3.9 31 356-387 125-155 (187)
313 PLN02327 CTP synthase 33.7 98 0.0021 32.5 6.1 30 133-162 2-35 (557)
314 TIGR01069 mutS2 MutS2 family p 33.6 4.5E+02 0.0098 29.0 11.6 28 133-160 323-354 (771)
315 PRK13975 thymidylate kinase; P 33.6 42 0.00092 29.5 3.2 23 133-155 3-27 (196)
316 cd03255 ABC_MJ0796_Lo1CDE_FtsE 33.5 29 0.00063 31.3 2.1 24 132-155 30-55 (218)
317 PRK04182 cytidylate kinase; Pr 33.0 39 0.00086 29.0 2.8 21 134-154 2-24 (180)
318 COG1926 Predicted phosphoribos 32.6 61 0.0013 29.6 3.9 33 357-390 125-157 (220)
319 PRK07078 hypothetical protein; 32.3 60 0.0013 35.6 4.5 41 113-154 471-515 (759)
320 PF02492 cobW: CobW/HypB/UreG, 32.2 53 0.0012 28.7 3.6 29 133-162 1-31 (178)
321 PRK08154 anaerobic benzoate ca 32.2 81 0.0017 30.5 5.1 29 131-162 132-162 (309)
322 cd01130 VirB11-like_ATPase Typ 32.2 69 0.0015 28.2 4.3 24 132-155 25-50 (186)
323 TIGR00337 PyrG CTP synthase. C 32.0 1.1E+02 0.0023 32.1 6.1 30 133-162 2-35 (525)
324 PRK13946 shikimate kinase; Pro 31.9 49 0.0011 29.1 3.3 23 132-154 10-34 (184)
325 COG2019 AdkA Archaeal adenylat 31.7 50 0.0011 29.2 3.1 22 311-332 143-164 (189)
326 PLN02318 phosphoribulokinase/u 31.6 58 0.0013 34.7 4.1 24 131-154 64-89 (656)
327 cd03226 ABC_cobalt_CbiO_domain 31.6 32 0.0007 30.7 2.1 24 132-155 26-51 (205)
328 COG1419 FlhF Flagellar GTP-bin 31.5 5.6E+02 0.012 25.9 11.0 105 113-223 182-296 (407)
329 PTZ00386 formyl tetrahydrofola 31.0 60 0.0013 34.2 4.1 33 130-162 66-105 (625)
330 cd03259 ABC_Carb_Solutes_like 31.0 33 0.00071 30.8 2.0 24 132-155 26-51 (213)
331 COG3367 Uncharacterized conser 30.9 64 0.0014 31.4 4.0 78 76-161 88-180 (339)
332 cd02035 ArsA ArsA ATPase funct 30.9 59 0.0013 29.5 3.7 25 138-162 7-31 (217)
333 PRK06995 flhF flagellar biosyn 30.9 50 0.0011 34.2 3.5 31 132-162 256-290 (484)
334 PRK05854 short chain dehydroge 30.6 1.4E+02 0.0031 28.5 6.6 88 129-219 11-103 (313)
335 PRK07261 topology modulation p 30.4 52 0.0011 28.7 3.1 20 135-154 3-24 (171)
336 smart00053 DYNc Dynamin, GTPas 30.3 79 0.0017 29.4 4.5 25 129-153 23-49 (240)
337 PRK13947 shikimate kinase; Pro 29.9 56 0.0012 28.0 3.3 25 134-161 3-29 (171)
338 PRK06388 amidophosphoribosyltr 29.8 1.5E+02 0.0033 30.6 6.8 79 305-390 295-389 (474)
339 PRK09213 pur operon repressor; 29.7 44 0.00095 31.8 2.7 67 319-386 142-225 (271)
340 PRK13695 putative NTPase; Prov 29.5 79 0.0017 27.3 4.2 28 134-161 2-31 (174)
341 PF00156 Pribosyltran: Phospho 29.5 60 0.0013 26.1 3.2 33 357-390 89-121 (125)
342 TIGR02173 cyt_kin_arch cytidyl 29.4 50 0.0011 28.1 2.9 25 134-161 2-28 (171)
343 PRK02277 orotate phosphoribosy 29.4 85 0.0018 28.2 4.4 69 319-388 97-171 (200)
344 COG0556 UvrB Helicase subunit 29.3 59 0.0013 33.9 3.6 45 113-161 16-60 (663)
345 COG1131 CcmA ABC-type multidru 29.3 33 0.00073 32.9 1.8 30 132-161 31-62 (293)
346 COG1855 ATPase (PilT family) [ 29.3 53 0.0011 33.7 3.2 75 134-219 265-341 (604)
347 PRK15177 Vi polysaccharide exp 29.1 43 0.00092 30.3 2.4 24 132-155 13-38 (213)
348 PRK13809 orotate phosphoribosy 29.1 86 0.0019 28.5 4.4 63 321-385 81-146 (206)
349 PRK13537 nodulation ABC transp 29.0 32 0.0007 33.1 1.7 25 132-156 33-59 (306)
350 cd05017 SIS_PGI_PMI_1 The memb 29.0 2E+02 0.0042 23.1 6.2 72 55-154 40-114 (119)
351 cd03294 ABC_Pro_Gly_Bertaine T 28.9 36 0.00079 32.0 2.0 24 132-155 50-75 (269)
352 PRK06197 short chain dehydroge 28.8 1.6E+02 0.0035 27.8 6.6 74 128-203 12-85 (306)
353 PF03266 NTPase_1: NTPase; In 28.8 78 0.0017 27.6 4.0 28 135-162 2-31 (168)
354 PRK12560 adenine phosphoribosy 28.7 82 0.0018 28.1 4.1 31 355-386 113-143 (187)
355 cd03222 ABC_RNaseL_inhibitor T 28.7 40 0.00087 29.7 2.1 27 131-157 24-52 (177)
356 cd01674 Homoaconitase_Swivel H 28.5 1.1E+02 0.0023 25.7 4.4 51 53-107 40-100 (129)
357 PRK08118 topology modulation p 28.4 64 0.0014 28.0 3.3 22 133-154 2-25 (167)
358 cd01131 PilT Pilus retraction 28.3 88 0.0019 27.9 4.3 21 134-154 3-25 (198)
359 TIGR01166 cbiO cobalt transpor 28.3 38 0.00082 29.8 1.9 24 132-155 18-43 (190)
360 PRK09183 transposase/IS protei 28.2 84 0.0018 29.5 4.3 30 133-162 103-134 (259)
361 PRK07847 amidophosphoribosyltr 28.2 1.6E+02 0.0036 30.7 6.7 33 357-390 368-400 (510)
362 cd03278 ABC_SMC_barmotin Barmo 28.1 55 0.0012 29.3 3.0 21 134-154 24-46 (197)
363 cd03281 ABC_MSH5_euk MutS5 hom 28.1 77 0.0017 28.7 3.9 29 133-161 30-62 (213)
364 TIGR01313 therm_gnt_kin carboh 27.9 41 0.0009 28.6 2.0 19 136-154 2-22 (163)
365 PHA02575 1 deoxynucleoside mon 27.8 55 0.0012 30.3 2.8 18 134-151 2-21 (227)
366 COG1474 CDC6 Cdc6-related prot 27.7 83 0.0018 31.3 4.4 23 134-157 47-69 (366)
367 TIGR00073 hypB hydrogenase acc 27.6 1.6E+02 0.0035 26.2 6.0 32 129-161 19-52 (207)
368 cd03272 ABC_SMC3_euk Eukaryoti 27.6 68 0.0015 29.3 3.6 23 132-154 23-47 (243)
369 PRK10247 putative ABC transpor 27.5 50 0.0011 30.0 2.6 24 132-155 33-58 (225)
370 PRK05416 glmZ(sRNA)-inactivati 27.4 58 0.0012 31.3 3.1 28 130-161 4-33 (288)
371 TIGR00017 cmk cytidylate kinas 27.2 63 0.0014 29.5 3.2 22 133-154 3-26 (217)
372 PRK06278 cobyrinic acid a,c-di 27.2 68 0.0015 33.1 3.7 27 131-157 237-266 (476)
373 PRK05793 amidophosphoribosyltr 26.9 1.6E+02 0.0035 30.3 6.5 79 306-391 293-387 (469)
374 PRK13540 cytochrome c biogenes 26.8 43 0.00094 29.8 2.0 25 131-155 26-52 (200)
375 TIGR02768 TraA_Ti Ti-type conj 26.8 69 0.0015 35.1 3.9 28 134-162 373-400 (744)
376 PRK04296 thymidine kinase; Pro 26.7 1.1E+02 0.0023 27.2 4.5 30 133-162 3-34 (190)
377 PF00142 Fer4_NifH: 4Fe-4S iro 26.7 62 0.0013 30.7 3.0 24 139-162 9-32 (273)
378 PRK11248 tauB taurine transpor 26.5 43 0.00093 31.2 2.0 24 132-155 27-52 (255)
379 cd03274 ABC_SMC4_euk Eukaryoti 26.4 81 0.0018 28.5 3.8 23 132-154 25-49 (212)
380 TIGR01650 PD_CobS cobaltochela 26.4 91 0.002 30.5 4.3 24 131-155 66-89 (327)
381 KOG3220 Similar to bacterial d 26.4 61 0.0013 29.5 2.8 27 132-162 1-29 (225)
382 PRK13652 cbiO cobalt transport 26.1 42 0.00091 31.7 1.9 25 132-156 30-56 (277)
383 COG1089 Gmd GDP-D-mannose dehy 26.1 1.3E+02 0.0028 29.1 4.9 69 134-210 7-80 (345)
384 PF01695 IstB_IS21: IstB-like 26.0 75 0.0016 27.9 3.4 29 134-162 49-79 (178)
385 PRK12724 flagellar biosynthesi 25.9 1E+02 0.0022 31.4 4.6 31 132-162 223-256 (432)
386 cd03263 ABC_subfamily_A The AB 25.8 46 0.00099 30.0 2.0 24 132-155 28-53 (220)
387 PRK08525 amidophosphoribosyltr 25.8 1.5E+02 0.0033 30.3 6.0 80 305-391 279-374 (445)
388 PF07693 KAP_NTPase: KAP famil 25.7 1.4E+02 0.0031 28.4 5.6 39 119-157 6-47 (325)
389 PF04851 ResIII: Type III rest 25.7 88 0.0019 26.5 3.8 39 115-154 9-50 (184)
390 PF01558 POR: Pyruvate ferredo 25.7 2.3E+02 0.005 24.4 6.4 144 142-343 4-153 (173)
391 cd03260 ABC_PstB_phosphate_tra 25.7 67 0.0015 29.1 3.1 23 132-154 26-50 (227)
392 COG4586 ABC-type uncharacteriz 25.6 50 0.0011 31.6 2.2 30 132-161 50-81 (325)
393 PRK07231 fabG 3-ketoacyl-(acyl 25.6 2.2E+02 0.0047 25.6 6.6 83 131-219 4-91 (251)
394 PRK10744 pstB phosphate transp 25.6 58 0.0013 30.3 2.7 25 131-155 38-64 (260)
395 cd03225 ABC_cobalt_CbiO_domain 25.5 50 0.0011 29.5 2.2 24 132-155 27-52 (211)
396 cd03265 ABC_DrrA DrrA is the A 25.5 49 0.0011 29.8 2.2 24 132-155 26-51 (220)
397 cd03240 ABC_Rad50 The catalyti 25.5 80 0.0017 28.4 3.5 24 131-154 21-46 (204)
398 COG2805 PilT Tfp pilus assembl 25.4 1.7E+02 0.0037 28.5 5.8 22 133-154 126-150 (353)
399 PRK10908 cell division protein 25.4 47 0.001 30.0 2.0 25 131-155 27-53 (222)
400 cd03293 ABC_NrtD_SsuB_transpor 25.4 42 0.00091 30.3 1.7 24 132-155 30-55 (220)
401 TIGR03608 L_ocin_972_ABC putat 25.3 50 0.0011 29.3 2.2 24 132-155 24-49 (206)
402 cd03232 ABC_PDR_domain2 The pl 25.3 66 0.0014 28.4 2.9 23 132-154 33-57 (192)
403 cd03256 ABC_PhnC_transporter A 25.3 50 0.0011 30.1 2.2 24 132-155 27-52 (241)
404 PRK09825 idnK D-gluconate kina 25.3 77 0.0017 27.8 3.3 22 133-154 4-27 (176)
405 smart00763 AAA_PrkA PrkA AAA d 25.2 1.7E+02 0.0036 29.1 5.9 78 73-156 19-104 (361)
406 PRK09111 DNA polymerase III su 25.2 56 0.0012 34.8 2.8 21 134-155 51-71 (598)
407 PRK09493 glnQ glutamine ABC tr 25.1 50 0.0011 30.3 2.2 25 131-155 26-52 (240)
408 PF13401 AAA_22: AAA domain; P 25.1 72 0.0016 25.6 3.0 22 134-156 9-30 (131)
409 COG5623 CLP1 Predicted GTPase 25.0 1.1E+02 0.0024 29.8 4.3 47 113-162 83-131 (424)
410 PRK10463 hydrogenase nickel in 25.0 2E+02 0.0043 27.7 6.2 33 129-162 101-135 (290)
411 PRK10584 putative ABC transpor 24.9 52 0.0011 29.8 2.2 25 131-155 35-61 (228)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 24.9 49 0.0011 27.8 1.9 24 132-155 26-51 (144)
413 cd03253 ABCC_ATM1_transporter 24.8 57 0.0012 29.7 2.5 25 131-155 26-52 (236)
414 PLN02199 shikimate kinase 24.8 1.2E+02 0.0026 29.3 4.7 41 118-162 89-131 (303)
415 PRK08533 flagellar accessory p 24.7 1.3E+02 0.0028 27.6 4.8 30 132-162 24-56 (230)
416 cd03231 ABC_CcmA_heme_exporter 24.6 47 0.001 29.6 1.9 25 131-155 25-51 (201)
417 cd03237 ABC_RNaseL_inhibitor_d 24.6 53 0.0011 30.5 2.2 25 131-155 24-50 (246)
418 PF08303 tRNA_lig_kinase: tRNA 24.6 45 0.00097 29.3 1.6 14 141-154 10-23 (168)
419 TIGR02673 FtsE cell division A 24.3 49 0.0011 29.6 1.9 24 132-155 28-53 (214)
420 PRK13477 bifunctional pantoate 24.3 71 0.0015 33.3 3.2 24 131-154 283-308 (512)
421 PRK09219 xanthine phosphoribos 24.3 57 0.0012 29.2 2.3 30 355-385 116-145 (189)
422 TIGR02770 nickel_nikD nickel i 24.3 53 0.0012 29.9 2.2 25 131-155 11-37 (230)
423 PRK13833 conjugal transfer pro 24.2 90 0.002 30.5 3.8 37 28-70 10-49 (323)
424 PRK00023 cmk cytidylate kinase 24.1 77 0.0017 29.0 3.2 23 132-154 4-28 (225)
425 PRK14235 phosphate transporter 24.1 75 0.0016 29.7 3.2 25 131-155 44-70 (267)
426 PRK13650 cbiO cobalt transport 24.1 51 0.0011 31.2 2.0 26 132-157 33-60 (279)
427 COG2759 MIS1 Formyltetrahydrof 24.0 72 0.0016 32.6 3.0 34 129-162 49-88 (554)
428 COG0566 SpoU rRNA methylases [ 23.9 4.4E+02 0.0096 24.7 8.4 69 61-141 108-193 (260)
429 COG1066 Sms Predicted ATP-depe 23.9 2.3E+02 0.0051 28.8 6.5 113 131-247 92-211 (456)
430 cd03250 ABCC_MRP_domain1 Domai 23.8 61 0.0013 28.8 2.4 25 131-155 30-56 (204)
431 PRK14274 phosphate ABC transpo 23.8 79 0.0017 29.4 3.3 24 132-155 38-63 (259)
432 cd03213 ABCG_EPDR ABCG transpo 23.7 54 0.0012 29.1 2.1 23 132-154 35-59 (194)
433 TIGR00486 YbgI_SA1388 dinuclea 23.5 2.9E+02 0.0063 25.7 7.0 63 27-96 1-67 (249)
434 COG0003 ArsA Predicted ATPase 23.4 1.1E+02 0.0024 29.9 4.3 29 133-161 3-33 (322)
435 TIGR00960 3a0501s02 Type II (G 23.4 51 0.0011 29.6 1.9 24 132-155 29-54 (216)
436 cd01673 dNK Deoxyribonucleosid 23.3 63 0.0014 28.4 2.4 21 134-154 1-23 (193)
437 PRK06851 hypothetical protein; 23.2 1.2E+02 0.0025 30.3 4.4 31 132-162 30-62 (367)
438 cd00267 ABC_ATPase ABC (ATP-bi 23.2 58 0.0013 27.6 2.1 24 132-155 25-50 (157)
439 cd00009 AAA The AAA+ (ATPases 23.2 3.1E+02 0.0068 21.5 6.6 44 116-161 5-50 (151)
440 PRK11629 lolD lipoprotein tran 23.1 56 0.0012 29.8 2.1 24 132-155 35-60 (233)
441 PRK03731 aroL shikimate kinase 23.1 91 0.002 26.7 3.3 21 134-154 4-26 (171)
442 PF05621 TniB: Bacterial TniB 23.0 1.2E+02 0.0025 29.4 4.2 46 102-155 35-83 (302)
443 cd03252 ABCC_Hemolysin The ABC 22.9 63 0.0014 29.5 2.4 26 131-156 27-54 (237)
444 cd03267 ABC_NatA_like Similar 22.9 56 0.0012 30.0 2.0 24 132-155 47-72 (236)
445 cd03300 ABC_PotA_N PotA is an 22.9 57 0.0012 29.8 2.1 25 132-156 26-52 (232)
446 PF13476 AAA_23: AAA domain; P 22.8 75 0.0016 27.6 2.8 25 131-155 18-44 (202)
447 PRK14951 DNA polymerase III su 22.7 8.4E+02 0.018 26.2 10.9 23 133-155 39-63 (618)
448 PRK14528 adenylate kinase; Pro 22.7 94 0.002 27.4 3.4 22 133-154 2-25 (186)
449 TIGR01184 ntrCD nitrate transp 22.4 57 0.0012 29.8 2.0 24 132-155 11-36 (230)
450 TIGR03864 PQQ_ABC_ATP ABC tran 22.4 60 0.0013 29.7 2.1 24 132-155 27-52 (236)
451 cd03292 ABC_FtsE_transporter F 22.3 61 0.0013 29.0 2.1 24 132-155 27-52 (214)
452 TIGR02315 ABC_phnC phosphonate 22.2 65 0.0014 29.5 2.3 24 132-155 28-53 (243)
453 cd03247 ABCC_cytochrome_bd The 22.2 68 0.0015 27.9 2.4 24 132-155 28-53 (178)
454 cd03269 ABC_putative_ATPase Th 22.2 88 0.0019 27.9 3.1 23 132-154 26-50 (210)
455 cd03266 ABC_NatA_sodium_export 22.1 64 0.0014 29.0 2.2 24 132-155 31-56 (218)
456 PRK14869 putative manganese-de 22.1 3.8E+02 0.0081 28.0 8.3 85 27-123 138-244 (546)
457 PRK14251 phosphate ABC transpo 22.1 75 0.0016 29.3 2.7 24 132-155 30-55 (251)
458 cd03258 ABC_MetN_methionine_tr 22.0 61 0.0013 29.5 2.1 24 132-155 31-56 (233)
459 TIGR03263 guanyl_kin guanylate 22.0 76 0.0016 27.4 2.6 22 133-154 2-25 (180)
460 TIGR00101 ureG urease accessor 21.9 1.2E+02 0.0025 27.2 3.9 22 134-155 3-26 (199)
461 TIGR00972 3a0107s01c2 phosphat 21.8 67 0.0015 29.6 2.4 25 131-155 26-52 (247)
462 cd03214 ABC_Iron-Siderophores_ 21.8 64 0.0014 28.2 2.1 30 132-161 25-56 (180)
463 TIGR00390 hslU ATP-dependent p 21.6 91 0.002 31.8 3.3 26 134-160 52-77 (441)
464 TIGR02782 TrbB_P P-type conjug 21.5 7.2E+02 0.016 23.8 10.1 75 133-218 133-214 (299)
465 cd03262 ABC_HisP_GlnQ_permease 21.4 65 0.0014 28.8 2.1 24 132-155 26-51 (213)
466 PRK14242 phosphate transporter 21.4 87 0.0019 28.9 3.0 23 132-154 32-56 (253)
467 TIGR02769 nickel_nikE nickel i 21.4 59 0.0013 30.4 1.9 24 132-155 37-62 (265)
468 PRK11153 metN DL-methionine tr 21.3 59 0.0013 31.9 2.0 24 132-155 31-56 (343)
469 PRK05632 phosphate acetyltrans 21.3 6.2E+02 0.013 27.5 9.9 87 27-124 202-318 (684)
470 cd03369 ABCC_NFT1 Domain 2 of 21.3 80 0.0017 28.1 2.7 24 132-155 34-59 (207)
471 COG1040 ComFC Predicted amidop 21.2 1.7E+02 0.0037 26.9 4.8 45 345-390 170-217 (225)
472 cd03235 ABC_Metallic_Cations A 21.1 57 0.0012 29.2 1.7 24 132-155 25-50 (213)
473 TIGR01526 nadR_NMN_Atrans nico 21.1 93 0.002 30.3 3.2 23 132-154 162-186 (325)
474 PF00004 AAA: ATPase family as 21.1 81 0.0018 25.2 2.5 19 136-154 2-22 (132)
475 PF13173 AAA_14: AAA domain 21.0 1.1E+02 0.0024 25.0 3.2 23 132-154 2-26 (128)
476 TIGR02324 CP_lyasePhnL phospho 21.0 69 0.0015 28.9 2.2 24 132-155 34-59 (224)
477 PRK14250 phosphate ABC transpo 21.0 63 0.0014 29.7 2.0 24 132-155 29-54 (241)
478 PRK13811 orotate phosphoribosy 21.0 1.3E+02 0.0029 26.2 3.9 62 319-385 68-132 (170)
479 cd02021 GntK Gluconate kinase 20.9 73 0.0016 26.6 2.2 20 135-154 2-23 (150)
480 PRK00455 pyrE orotate phosphor 20.9 1.4E+02 0.0031 26.7 4.2 66 319-386 76-142 (202)
481 cd03216 ABC_Carb_Monos_I This 20.9 60 0.0013 27.9 1.7 25 132-156 26-52 (163)
482 cd03228 ABCC_MRP_Like The MRP 20.8 76 0.0016 27.4 2.3 26 131-156 27-54 (171)
483 cd03244 ABCC_MRP_domain2 Domai 20.7 77 0.0017 28.5 2.5 24 132-155 30-55 (221)
484 PRK11264 putative amino-acid A 20.7 71 0.0015 29.4 2.3 24 132-155 29-54 (250)
485 PRK13949 shikimate kinase; Pro 20.7 1E+02 0.0022 26.8 3.1 21 134-154 3-25 (169)
486 COG4717 Uncharacterized conser 20.7 2.2E+02 0.0048 31.6 6.0 28 132-161 24-53 (984)
487 TIGR01288 nodI ATP-binding ABC 20.7 59 0.0013 31.1 1.8 24 132-155 30-55 (303)
488 PF12637 TSCPD: TSCPD domain; 20.7 2.3E+02 0.0049 22.2 4.8 56 313-379 37-93 (95)
489 cd03261 ABC_Org_Solvent_Resist 20.6 66 0.0014 29.3 2.0 24 132-155 26-51 (235)
490 cd03295 ABC_OpuCA_Osmoprotecti 20.6 70 0.0015 29.3 2.2 24 132-155 27-52 (242)
491 PF01202 SKI: Shikimate kinase 20.6 71 0.0015 27.3 2.1 14 141-154 3-16 (158)
492 cd03301 ABC_MalK_N The N-termi 20.5 63 0.0014 28.9 1.8 24 132-155 26-51 (213)
493 PF11212 DUF2999: Protein of u 20.5 1.2E+02 0.0027 22.5 2.9 27 315-341 25-51 (82)
494 PRK00409 recombination and DNA 20.5 1.2E+03 0.026 25.9 13.7 30 132-161 327-360 (782)
495 PRK05201 hslU ATP-dependent pr 20.4 1E+02 0.0022 31.4 3.4 22 134-156 55-76 (443)
496 PRK13894 conjugal transfer ATP 20.4 1E+02 0.0022 30.0 3.4 38 28-71 14-54 (319)
497 TIGR01188 drrA daunorubicin re 20.3 66 0.0014 30.8 2.0 24 132-155 19-44 (302)
498 PRK10646 ADP-binding protein; 20.3 2.4E+02 0.0052 24.3 5.3 24 131-154 27-52 (153)
499 PF13277 YmdB: YmdB-like prote 20.2 3.6E+02 0.0078 25.4 6.7 118 115-252 12-146 (253)
500 cd03219 ABC_Mj1267_LivG_branch 20.2 61 0.0013 29.5 1.7 24 132-155 26-51 (236)
No 1
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7e-74 Score=572.21 Aligned_cols=358 Identities=34% Similarity=0.538 Sum_probs=330.6
Q ss_pred CccHHHHHHHhCCeecccC--CCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCcc-
Q 015950 26 IWTINEIAESVNGKILKWG--PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG- 102 (397)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~--~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~- 102 (397)
+|++.+++..+++.+.... .+++|++|||.+.| |++|+|++|+++|||+|+++|++ +||.+++++++...+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dsr~v~~--g~lF~al~G~~~Dgh~fi~~A~~-~GA~a~~v~r~~~~~~~~~ 78 (451)
T COG0770 2 LLTLDELADILGGALVGADPVVVSGVSIDSRKVKP--GDLFVALKGERFDGHDFIEQALA-AGAAAVLVARPVLPPAIPL 78 (451)
T ss_pred cccHHHHHHHhCCccccCcccceeeEEeecccCCC--CceeEEccCccccccchHHHHHh-cCCEEEEEecCcCCccccc
Confidence 5799999999999877655 38999999999999 99999999999999999999999 999999999987655566
Q ss_pred -EEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcc
Q 015950 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (397)
Q Consensus 103 -~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~ 181 (397)
++.|. |++++|++|+.+|++ ..+.++|+||||+|||||++|++++| +..++|..|.||||+.+|+|++++++
T Consensus 79 ~~~~V~-----d~~~al~~la~~~~~-~~~~kvIaITGS~GKTTTKe~la~iL-~~~~~v~~t~gn~Nn~iGlPltll~~ 151 (451)
T COG0770 79 VVLLVL-----DTLEALGKLAKAYRQ-KFNAKVIAITGSNGKTTTKEMLAAIL-STKGKVHATPGNFNNEIGLPLTLLRL 151 (451)
T ss_pred ceEEeH-----HHHHHHHHHHHHHHH-hcCCcEEEEeCCCCcHHHHHHHHHHH-hhcCeEecCCCccCccccchhHHHhC
Confidence 99999 999999999999988 88999999999999999999999999 55778999999999999999999999
Q ss_pred cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhc
Q 015950 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (397)
Q Consensus 182 ~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~ 261 (397)
..++|++|+|+|+++.|+|..++++++|+++|||||+.+|+++|||.|.++++|.+|+.+++++|++|+|.|++....+.
T Consensus 152 ~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~ 231 (451)
T COG0770 152 PADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWA 231 (451)
T ss_pred CCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977776
Q ss_pred CC-CCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 015950 262 VP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340 (397)
Q Consensus 262 ~~-~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L 340 (397)
.+ ...++++||....+|+++.+ +..+..+.+|++...+....+++|++|+||+.|+++|+++|+.+|+++++|+++|
T Consensus 232 ~~~~~~~v~~fg~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L 309 (451)
T COG0770 232 AKIGNAKVLSFGLNNGGDFRATN--IHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGL 309 (451)
T ss_pred hhcCCCcEEEEcCCCCCceeeEE--EEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 24789999987557999999 9999999999998774334899999999999999999999999999999999999
Q ss_pred cCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCe-EEEEEeee
Q 015950 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNV-VQCKWRKW 395 (397)
Q Consensus 341 ~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r-v~~v~~~~ 395 (397)
+.+++++||+|.+...++.++|||+||+||+||+++++.+..+++++ +.|++...
T Consensus 310 ~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ 365 (451)
T COG0770 310 KELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDML 365 (451)
T ss_pred HhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChh
Confidence 99999999999666668999999999999999999999999998776 78877543
No 2
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=2e-73 Score=578.69 Aligned_cols=355 Identities=30% Similarity=0.398 Sum_probs=314.3
Q ss_pred ccHHHHHHHhCCeeccc-CCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEE
Q 015950 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~ 105 (397)
|++++|++.++|.+.+. ..+++|++|||.|+| |+||||++|+++|||+|+++|++ +||.++|+++..+ ++.|+++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (453)
T PRK10773 4 VTLSQLADILNGELQGADITIDAVTTDTRKVTP--GCLFVALKGERFDAHDFADDAKA-AGAGALLVSRPLD-IDLPQLV 79 (453)
T ss_pred CCHHHHHHHhCCcccCCCeeeeEEEeeCCCCCC--CcEEEEecCCCCCHHHHHHHHHH-CCCeEEEEecCcC-CCCCEEE
Confidence 79999999999875432 248999999999999 99999999999999999999999 9999999997543 3679999
Q ss_pred EcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCC
Q 015950 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (397)
Q Consensus 106 v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~ 185 (397)
|+ |++.+|++|+.+++. .++.++||||||||||||++||+++|+..|. +..+.||+|+.+|.|++++....++
T Consensus 80 v~-----d~~~al~~la~~~~~-~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~-~~~t~gn~n~~~G~~~~~~~~~~~~ 152 (453)
T PRK10773 80 VK-----DTRLAFGQLAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILRQCGN-TLYTAGNLNNDIGVPLTLLRLTPEH 152 (453)
T ss_pred EC-----CHHHHHHHHHHHHHh-cCCCCEEEEcCCCchHHHHHHHHHHHHhcCc-ccccCccccCCcccccHHhcCCCCC
Confidence 99 999999999996665 5567899999999999999999999977665 5679999999999999988888899
Q ss_pred cEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcC-CC
Q 015950 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PR 264 (397)
Q Consensus 186 ~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~-~~ 264 (397)
+++|+|+|+++.++++++..+++|+++|||||++||+|+|||+|+|+++|.+||+.+++++.+|+|.||++...+.. ..
T Consensus 153 ~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~ 232 (453)
T PRK10773 153 DYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIG 232 (453)
T ss_pred cEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhc
Confidence 99999999988889988889999999999999999999999999999999999999888899999999998776651 11
Q ss_pred CCcEEEEeccC--CcceEEEeceEEecCCeEEEEEeec-CeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 015950 265 GVRKVFFGWRR--GCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (397)
Q Consensus 265 ~~~vi~~g~~~--~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~ 341 (397)
..++++||... .+|+++.+ +....++..|.+... +. +++++|++|+||++|+++|++++..+|+++++|.++|+
T Consensus 233 ~~~~~~~g~~~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~-~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~ 309 (453)
T PRK10773 233 SKTVWRFSPNAANSVDFTATN--IHVTSHGTEFTLHTPTGS-VDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLA 309 (453)
T ss_pred CCcEEEEeCCCCCcCcEEEEE--EEEeCCeeEEEEEecCce-EEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 13678999753 46898888 877777778887654 33 37899999999999999999999999999999999999
Q ss_pred CCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEeee
Q 015950 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWRKW 395 (397)
Q Consensus 342 ~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~~~ 395 (397)
+|++++||||.+...++.+||||||||||+||+++|+++++++++|++|+++.-
T Consensus 310 ~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~ 363 (453)
T PRK10773 310 NLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMA 363 (453)
T ss_pred hCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChh
Confidence 999999999998765779999999999999999999999998777888877643
No 3
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=6e-73 Score=578.78 Aligned_cols=357 Identities=32% Similarity=0.442 Sum_probs=312.2
Q ss_pred CCccHHHHHHHhCCeeccc--CCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC--C-C
Q 015950 25 PIWTINEIAESVNGKILKW--GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--N-W 99 (397)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~--~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~--~-~ 99 (397)
++|+++||+++++|.+.+. ..+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|++++.. . .
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~i~~i~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~~v~~~~~~~~~~~ 81 (479)
T PRK14093 5 PLWTSDAMAEAMGATRSGALPRDVTGISIDSRTLAP--GDAYFAIKGDVHDGHAFVAAALK-AGAALAVVERAQRDKFAA 81 (479)
T ss_pred CccCHHHHHHHhCCeecCCCCCceeEEEeecCCCCC--CCEEEEeccCcCChHHHHHHHHH-cCCcEEEEecccccccCC
Confidence 4689999999999986532 349999999999999 99999999999999999999999 9999999986421 1 2
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhh
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~ 179 (397)
++|+++|+ |++++|+.||++|+. .+++++||||||||||||++||+++|+..|. +..+.|++|+.+|.|.++.
T Consensus 82 ~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~-~~~~~g~~n~~iG~p~~l~ 154 (479)
T PRK14093 82 DAPLLVVD-----DVLAALRDLGRAARA-RLEAKVIAVTGSVGKTSTKEALRGVLGAQGE-THASVASFNNHWGVPLSLA 154 (479)
T ss_pred CCCEEEEC-----CHHHHHHHHHHHHHH-hcCCCEEEEcCCCCccHHHHHHHHHHHhcCC-ccCCCccCCCccchhHHHH
Confidence 58999999 999999999996665 5778999999999999999999999977665 4568999999999999999
Q ss_pred cccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHh
Q 015950 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (397)
Q Consensus 180 ~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~ 259 (397)
++..+++++|||+|+++.++++.+...++|+++|||||++||+|+|+|+|+|+++|.+||+.+++++.+|+|.|||+...
T Consensus 155 ~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~ 234 (479)
T PRK14093 155 RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDR 234 (479)
T ss_pred cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHH
Confidence 88888999999999999999888888899999999999999999999999999999999998888899999999999877
Q ss_pred hcCC---CC-CcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHH
Q 015950 260 LTVP---RG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335 (397)
Q Consensus 260 ~~~~---~~-~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~ 335 (397)
+... .. .++++||.+..+++++.+ +.....+..|.+...+..+.+++|++|.||++|+++|++++..+|+++++
T Consensus 235 l~~~~~~~~~~~vi~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~ 312 (479)
T PRK14093 235 LAASARAAGIARIVSFGADEKADARLLD--VALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAGADLAL 312 (479)
T ss_pred HHHHhhhccCCcEEEEeCCCCccEEEEE--EEEcCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 6511 01 268899977667888888 77666677777754322237899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCeeeEEee---cCCeEEEEecCCCCHHHHHHHHHHHhcc---CCCeEEEEEe
Q 015950 336 VGISLSNFSPVQMRSELLVS---RSGIKIVNDAYNANPISTRAAIDLLKDI---ACNVVQCKWR 393 (397)
Q Consensus 336 i~~~L~~~~~~~GR~e~i~~---~~~~~vi~Dsyahnp~s~~~~l~~l~~~---~~~rv~~v~~ 393 (397)
|.++|++|+|++|||+.+.. .++.+||||||||||+||+++|++++++ +++|+++||+
T Consensus 313 i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G 376 (479)
T PRK14093 313 AALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLG 376 (479)
T ss_pred HHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEEC
Confidence 99999999999999998643 3458999999999999999999999997 3567777775
No 4
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=6e-71 Score=555.58 Aligned_cols=328 Identities=37% Similarity=0.568 Sum_probs=286.7
Q ss_pred eeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccC-CCCCccEEEEcCCCCccHHHHHHHHHHHhhcCC
Q 015950 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGFVQVEGNGNVNTLNSLVNMACYARNSR 129 (397)
Q Consensus 51 ~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~-~~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~ 129 (397)
+|||+|+| |+||||++|+++|||+|+++|++ +||.++|++++. ...++|+|+|+ |++++|+.||++|+. .
T Consensus 1 ~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~~i~~~~~~~~~~~~~i~V~-----d~~~al~~la~~~~~-~ 71 (417)
T TIGR01143 1 TDSRAIKP--GDLFIALKGERFDGHDFVEQALA-AGAVAVLVDREVGPDNGLPQILVD-----DTLEALQALASAKRA-K 71 (417)
T ss_pred CCCCccCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEcccccCCCCCCEEEEC-----CHHHHHHHHHHHHHh-h
Confidence 59999999 99999999999999999999999 999999999742 11267999999 999999999995444 4
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCC
Q 015950 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (397)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p 209 (397)
.+.++||||||||||||++||+++|+..|. +.++.||+|+.+|.|.+++..+.+++++|||+|+++.+++.+...+++|
T Consensus 72 ~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~-~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p 150 (417)
T TIGR01143 72 FSGKVIGITGSSGKTTTKEMLAAILSHKYK-VFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKP 150 (417)
T ss_pred CCCCEEEEcCCCchhHHHHHHHHHHhccCc-EecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccCC
Confidence 457899999999999999999999976665 7788999999999999998888999999999998888888877888999
Q ss_pred cEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC-CCCcEEEEeccCCcceEEEeceEEe
Q 015950 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVAN 288 (397)
Q Consensus 210 ~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~d~~~~~~~i~~ 288 (397)
+++|||||++||+|+|||+|+|+++|.+||+.+++++.+|+|.|||+...+... .+.++++||.+. +++++.+ +..
T Consensus 151 ~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--i~~ 227 (417)
T TIGR01143 151 DIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEG-GDFSAAD--ISY 227 (417)
T ss_pred CEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCC-CcEEEEE--EEE
Confidence 999999999999999999999999999999988888999999999988777521 124688999754 6788877 776
Q ss_pred cCCe-EEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCC
Q 015950 289 GGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (397)
Q Consensus 289 ~~~~-~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsya 367 (397)
...+ ..|.+...+..+++++|++|.||++|+++|++++..+|+++++|.++|++|++++|||| +...+++++|+||||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e-~~~~~~~~vidDsya 306 (417)
T TIGR01143 228 SALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFE-IQTKNGLTLIDDTYN 306 (417)
T ss_pred cCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcee-EEcCCCcEEEEcCCC
Confidence 6656 77877654222378899999999999999999999999999999999999999999999 444578999999999
Q ss_pred CCHHHHHHHHHHHhccCCCeEEEEE
Q 015950 368 ANPISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 368 hnp~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
|||+||+++|+++++++++++++++
T Consensus 307 ~np~s~~~al~~l~~~~~r~i~VlG 331 (417)
T TIGR01143 307 ANPDSMRAALDALARFPGKKILVLG 331 (417)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 9999999999999988755555544
No 5
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=5.4e-67 Score=566.18 Aligned_cols=353 Identities=24% Similarity=0.361 Sum_probs=308.6
Q ss_pred CccHHHHHHHhCCeeccc--CCCceEEeeCCcc--ccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccC-C---
Q 015950 26 IWTINEIAESVNGKILKW--GPPGIICTDTRIL--APNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-N--- 97 (397)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~--~~i~~i~~dSr~v--~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~-~--- 97 (397)
.|++++|.+.+++.+..+ ..+++|++|||+| +| |+||||++|+++|||+|+++|++ +||+++|++++. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~DSR~v~~~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~iv~~~~~~~~~~ 78 (822)
T PRK11930 2 SYTLESISGILGAEGLGDKDAIIDQILTDSRSLSFPE--NTLFFALKGERNDGHRYIQELYE-KGVRNFVVSEEKHPEES 78 (822)
T ss_pred cccHHHHHHHhCCeeccCCCceeCEEEecCCccCCCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEecccccccc
Confidence 479999999999876532 2389999999999 99 99999999999999999999999 999999997632 1
Q ss_pred CCCccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhh
Q 015950 98 NWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS 177 (397)
Q Consensus 98 ~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~ 177 (397)
..++|+++|+ |++++|+.||++|+. ++++++||||||||||||++||+++|+ ..+++..+.+++|+.+|.|.+
T Consensus 79 ~~~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGT~GKTTT~~ll~~iL~-~~~~~~~~~~~~n~~ig~p~~ 151 (822)
T PRK11930 79 YPDANFLKVK-----DPLKALQELAAYHRS-QFDIPVIGITGSNGKTIVKEWLYQLLS-PDYNIVRSPRSYNSQIGVPLS 151 (822)
T ss_pred CCCCCEEEEC-----CHHHHHHHHHHHHHH-hCCCCEEEEeCCCcHHHHHHHHHHHHh-ccCcEecCCcccCcchhHHHH
Confidence 1257999999 999999999997665 788999999999999999999999995 455667788999999999999
Q ss_pred hhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhH
Q 015950 178 LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (397)
Q Consensus 178 l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~ 257 (397)
++.+..+++++|||+|+++.+++++++.+++||++|||||++||+|||+|+|+|+++|.+||+. .+.+|+|.||++.
T Consensus 152 ~~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~ 228 (822)
T PRK11930 152 VWQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELI 228 (822)
T ss_pred HhcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHH
Confidence 9888899999999999999999999998899999999999999999999999999999999974 4789999999988
Q ss_pred HhhcCC--CCCcEEEEeccC-CcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHH
Q 015950 258 ANLTVP--RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLA 334 (397)
Q Consensus 258 ~~~~~~--~~~~vi~~g~~~-~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~ 334 (397)
..+... ...++++||... .+++++.+ ++...++..|.+...+....+++|++|+||++|+++|++++..+|++++
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~d~~~~~--i~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~ 306 (822)
T PRK11930 229 SSCITKSNLTLKLISWSRKDPEAPLYIPF--VEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSAD 306 (822)
T ss_pred HHHHHhhhcCCcEEEEcCCCCCCcEEEEE--EEEcCCceEEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 765511 124688999754 56888888 8777777777765432223789999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccC--CCeEEEEEe
Q 015950 335 QVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA--CNVVQCKWR 393 (397)
Q Consensus 335 ~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~--~~rv~~v~~ 393 (397)
++.++|++|++++||||++...+++++|+|||||||+||+++|++++++. ++++++++.
T Consensus 307 ~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~ 367 (822)
T PRK11930 307 QIQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSD 367 (822)
T ss_pred HHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECC
Confidence 99999999999999999998667899999999999999999999999874 367777654
No 6
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=2e-66 Score=528.61 Aligned_cols=334 Identities=24% Similarity=0.316 Sum_probs=283.4
Q ss_pred ccHHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC-CCCccEEE
Q 015950 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQ 105 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~-~~~~~~i~ 105 (397)
+.|.++++. ..+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|+++..+ ..++|+|+
T Consensus 4 ~~~~~~~~~--------~~i~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~i~ 72 (460)
T PRK00139 4 MKLRDLLAP--------VEITGLTYDSRKVKP--GDLFVALPGHKVDGRDFIAQAIA-NGAAAVVAEADGEAGTGVPVII 72 (460)
T ss_pred chHHHHhcC--------CceeEEEeeccCcCC--CCEEEEeCCCcCcHHHHHHHHHH-CCCEEEEEcCccccCCCceEEE
Confidence 456666652 348899999999999 99999999999999999999999 9999999997532 12679999
Q ss_pred EcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccch----------
Q 015950 106 VEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV---------- 174 (397)
Q Consensus 106 v~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~---------- 174 (397)
|+ |+++||++||+ ++++|+.++++||||||||||||++||+++|++.|+++ ++.||.|+.++.
T Consensus 73 V~-----d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~gn~~~~i~~~~~~~~~~t~ 146 (460)
T PRK00139 73 VP-----DLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKT-ALIGTLGNGIGGELIPSGLTTP 146 (460)
T ss_pred EC-----CHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCE-EEECCcccccCCeecccCCCCc
Confidence 99 99999999999 55556668899999999999999999999998888765 578888877765
Q ss_pred -hhhhhc-----ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEE
Q 015950 175 -ALSLIG-----IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248 (397)
Q Consensus 175 -p~~l~~-----~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~ 248 (397)
|+++++ .+.+++++|+|+| ++.+++.++.. ++|+++|||||+.||+++|||+|+|+++|++||+... +.+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~VlE~~-s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~ 222 (460)
T PRK00139 147 DALDLQRLLAELVDAGVTYAAMEVS-SHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAA 222 (460)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEcc-hhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeE
Confidence 666654 4788999999998 66666667765 8999999999999999999999999999999998642 489
Q ss_pred EEcCCCHhHHhhcCCCCCcEEEEecc-CCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHH
Q 015950 249 VLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVAT 327 (397)
Q Consensus 249 vln~Dd~~~~~~~~~~~~~vi~~g~~-~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~ 327 (397)
|+|.||+....+.. ++.+||.. ..+++++.+ +.....+..|.+.. .+.+|++|+||++|+++|++++.
T Consensus 223 v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaAia~a~ 291 (460)
T PRK00139 223 VINADDEVGRRLLA----LPDAYAVSMAGADLRATD--VEYTDSGQTFTLVT-----EVESPLIGRFNVSNLLAALAALL 291 (460)
T ss_pred EEEcCcHhHHHHHh----hcEEEEecCCCCcEEEEE--EEEecCceEEEEEE-----EEEecccchhHHHHHHHHHHHHH
Confidence 99999998877652 25677765 456888877 76555566666542 57789999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 328 ~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
.+|+++++|.++|++|++++||||++...+++++|+| |||||+||+++++++++++++|+++|+.
T Consensus 292 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG 356 (460)
T PRK00139 292 ALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFG 356 (460)
T ss_pred HcCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 9999999999999999999999999976568899999 9999999999999999875566666653
No 7
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=3e-66 Score=528.29 Aligned_cols=334 Identities=24% Similarity=0.290 Sum_probs=281.2
Q ss_pred CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC--CCCccEEEEcCCCCccHHHHHHHHHH
Q 015950 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NWDKGFVQVEGNGNVNTLNSLVNMAC 123 (397)
Q Consensus 46 i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~--~~~~~~i~v~~~~~~d~~~aL~~la~ 123 (397)
+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|++++.+ .+++|+++|+ |+++||++||+
T Consensus 4 ~~~v~~dsr~v~~--g~lFval~G~~~dgh~fi~~A~~-~GA~~~i~~~~~~~~~~~~~~~~v~-----d~~~al~~la~ 75 (464)
T TIGR01085 4 VTGLTLDSREVKP--GDLFVAIKGTHVDGHDFIHDAIA-NGAVAVVVERDVDFYVAPVPVIIVP-----DLRHALSSLAA 75 (464)
T ss_pred eeEEEecCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEccccccccCCceEEEEC-----CHHHHHHHHHH
Confidence 7889999999999 99999999999999999999999 9999999998543 1257999999 99999999999
Q ss_pred Hh-hcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCe--EEcCCCC---cCccchh------------hhhhcc-cCC
Q 015950 124 YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNW---NNRVGVA------------LSLIGI-DRA 184 (397)
Q Consensus 124 ~~-~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v--~~t~g~~---n~~~g~p------------~~l~~~-~~~ 184 (397)
.| ++|+.++++||||||||||||++||+++|+..|+++ .+|.|++ |+.+|.| .+++.+ +.+
T Consensus 76 ~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~ 155 (464)
T TIGR01085 76 AFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAG 155 (464)
T ss_pred HHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCC
Confidence 54 445678899999999999999999999999988875 5678887 7777766 224445 678
Q ss_pred CcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCC
Q 015950 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264 (397)
Q Consensus 185 ~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~ 264 (397)
++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|.++|+.++++|.+|+|.|||....+....
T Consensus 156 ~~~~VlE~g-~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~ 233 (464)
T TIGR01085 156 AQYAVMEVS-SHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRL 233 (464)
T ss_pred CCEEEEEec-HHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhc
Confidence 999999999 67777788877 7999999999999999999999999999999999888788999999999887765211
Q ss_pred CCcEEEEec-cC-----CcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcC-CCHHHHH
Q 015950 265 GVRKVFFGW-RR-----GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFG-VSLAQVG 337 (397)
Q Consensus 265 ~~~vi~~g~-~~-----~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lg-i~~~~i~ 337 (397)
...++|+. .. .++++..+ +....++..|.+...+....+++|++|.||++|+++|++++..+| ++++.|.
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lg~i~~e~i~ 310 (464)
T TIGR01085 234 -PKDITVSAITQPADGRAQDIKITD--SGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDIV 310 (464)
T ss_pred -CCCeEEEEecCCCccccccEEEEE--EEEecCceEEEEEeCCceEEEEecCccHhHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 12233332 21 35677666 665555667777644222378999999999999999999999999 9999999
Q ss_pred HHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 338 ~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
++|++|++++||||++...+++.+|+| |||||+||+++|+++++++++|+++|+.
T Consensus 311 ~~L~~~~~~~gR~e~~~~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlG 365 (464)
T TIGR01085 311 AALEKFRGVPGRMELVDGGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFG 365 (464)
T ss_pred HHHHhCCCCCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEEC
Confidence 999999999999999876567899999 9999999999999999886555566654
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=8.5e-65 Score=558.14 Aligned_cols=336 Identities=35% Similarity=0.464 Sum_probs=291.2
Q ss_pred CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHHHh
Q 015950 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA 125 (397)
Q Consensus 46 i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~~~ 125 (397)
+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|++++....++|+|+|+ |++++|++|+.+|
T Consensus 526 i~~i~~dSr~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~i~~~~~~~~~~~~i~V~-----d~~~al~~la~~~ 597 (958)
T PRK11929 526 AGAVSTDSRSVGR--GELFVALRGENFDGHDYLPQAFA-AGACAAVVERQVADVDLPQIVVD-----DTRAALGRLATAW 597 (958)
T ss_pred cCeEEeeCCccCC--CCEEEEecCCCCCHHHHHHHHHH-cCCEEEEECCCccCCCCCEEEeC-----CHHHHHHHHHHHH
Confidence 8999999999999 99999999999999999999999 99999999875322367999999 9999999999966
Q ss_pred hcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCC--CCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhh
Q 015950 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (397)
Q Consensus 126 ~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g--~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~ 203 (397)
+. ..+.++||||||||||||++||+++|+..| ..+..+.||+|+.+|.|++++.++.+++++|||+|+++.++++++
T Consensus 598 ~~-~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~~~~~~~~VlE~s~~~~g~~~~~ 676 (958)
T PRK11929 598 RA-RFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYL 676 (958)
T ss_pred Hh-cCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcCCCCCcEEEEEeCCCCCccHHHH
Confidence 55 556789999999999999999999997764 346778999999999999998888899999999999888899998
Q ss_pred ccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC-CCCcEEEEeccCCcceEEE
Q 015950 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLV 282 (397)
Q Consensus 204 ~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~d~~~~ 282 (397)
..+++|+++|||||++||||+|+|+|+|+++|+++|+.+++++.+|+|.||++...+... ...++++||.+..+++.+.
T Consensus 677 ~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~~~~ 756 (958)
T PRK11929 677 AAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAE 756 (958)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcceEee
Confidence 887899999999999999999999999999999999988888999999999988776521 1246889997655566554
Q ss_pred eceEEe-----cCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecC
Q 015950 283 AAQVAN-----GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357 (397)
Q Consensus 283 ~~~i~~-----~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~ 357 (397)
. +.. ..++..|.+...+...++++|++|.||++|+++|++++..+|++++++.++|++|++++||||.+...+
T Consensus 757 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~~ 834 (958)
T PRK11929 757 K--IAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSC 834 (958)
T ss_pred e--cccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCCceEEEcCC
Confidence 3 221 234556666543222378999999999999999999999999999999999999999999999998667
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhccC-CCeEEEEE
Q 015950 358 GIKIVNDAYNANPISTRAAIDLLKDIA-CNVVQCKW 392 (397)
Q Consensus 358 ~~~vi~Dsyahnp~s~~~~l~~l~~~~-~~rv~~v~ 392 (397)
++++|+|||||||+||+++|+++++++ ++++++++
T Consensus 835 ~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG 870 (958)
T PRK11929 835 GTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLG 870 (958)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEEC
Confidence 899999999999999999999999887 45555554
No 9
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=8.8e-63 Score=542.21 Aligned_cols=351 Identities=25% Similarity=0.304 Sum_probs=291.7
Q ss_pred cHHHHHHHhCCeeccc-CCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC---C-CCcc
Q 015950 28 TINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---N-WDKG 102 (397)
Q Consensus 28 ~l~~l~~~~~~~~~~~-~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~---~-~~~~ 102 (397)
+++++...+.+- .+. ..+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|+++... . .++|
T Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~~~ 86 (958)
T PRK11929 11 KLEELLQALAWL-RGCVAATADLRLDSREVQP--GDLFVACRGAASDGRAFIDQALA-RGAAAVLVEAEGEDQVAAADAL 86 (958)
T ss_pred hHHHHHHHHHhh-cccccccceeeeeccCCCC--CCEEEEeCCCCCCHHHHHHHHHH-cCCEEEEEeccccccccCCCCe
Confidence 455555544321 111 249999999999999 99999999999999999999999 9999999997431 1 2579
Q ss_pred EEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCc-----cchhh
Q 015950 103 FVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR-----VGVAL 176 (397)
Q Consensus 103 ~i~v~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~-----~g~p~ 176 (397)
+|.|+ |++++|+.||+ +|++|+.++++||||||||||||++||+++|+..|+++ ++.|++|+. ++.|.
T Consensus 87 ~i~V~-----d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~g~~~~~i~~~~i~~~~ 160 (958)
T PRK11929 87 VLPVA-----DLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPC-GSIGTLGARLDGRLIPGSL 160 (958)
T ss_pred EEEEC-----CHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCE-EEECCccccCCCeeeecCC
Confidence 99999 99999999999 88888888999999999999999999999999889887 467777663 45555
Q ss_pred hh----------hcc-cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCC
Q 015950 177 SL----------IGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG 245 (397)
Q Consensus 177 ~l----------~~~-~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~ 245 (397)
+. ..+ +.+++++|||+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++||+.++++
T Consensus 161 t~~~~~~~~~~l~~~~~~~~~~~VlE~s-s~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~ 238 (958)
T PRK11929 161 TTPDAIILHRILARMRAAGADAVAMEAS-SHGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGL 238 (958)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEec-cchHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccC
Confidence 43 233 679999999997 67777888876 699999999999999999999999999999999988888
Q ss_pred cEEEEcCCCHhHHhhcC--CCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHH
Q 015950 246 DVCVLNADDPLVANLTV--PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAA 323 (397)
Q Consensus 246 ~~~vln~Dd~~~~~~~~--~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAi 323 (397)
+.+|+|.|||+...+.. .....+.+|+....+|+++.+ +.....+..|.+...+..+.+++|++|.||++|+++|+
T Consensus 239 ~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAi 316 (958)
T PRK11929 239 GAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARD--LRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVA 316 (958)
T ss_pred CeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEE--EEEcCCceEEEEEeCCceEEEEecCccHhhHHHHHHHH
Confidence 99999999999877752 111245566655557888887 76666677777765422237889999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhcCCCCCCCeeeEEe---ecCCeEEEEecCCCCHHHHHHHHHHHhccC---CCeEEEEEe
Q 015950 324 AVATLFGVSLAQVGISLSNFSPVQMRSELLV---SRSGIKIVNDAYNANPISTRAAIDLLKDIA---CNVVQCKWR 393 (397)
Q Consensus 324 a~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~---~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~---~~rv~~v~~ 393 (397)
+++..+|+++++|.++|++|++++||||++. ..+++.+|+| |||||+||+++|++++++. ++|+++||.
T Consensus 317 a~a~~lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g 391 (958)
T PRK11929 317 AALKKLGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFG 391 (958)
T ss_pred HHHHHcCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEEC
Confidence 9999999999999999999999999999984 2367889999 9999999999999999643 467777764
No 10
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=4.2e-62 Score=499.50 Aligned_cols=320 Identities=21% Similarity=0.218 Sum_probs=257.0
Q ss_pred CCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHH-
Q 015950 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC- 123 (397)
Q Consensus 45 ~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~- 123 (397)
.+++|++|||+|+| |+||||+ |.++ ||+|+++|++ +||+++|+++..+. ++|+|+|+ |+++||+.||+
T Consensus 33 ~i~~i~~DSR~v~~--g~lFva~-~~~~-gh~fi~~A~~-~GA~~~v~~~~~~~-~~~~i~V~-----d~~~al~~la~~ 101 (481)
T PRK14022 33 QFDDISYDSRTADE--GTLFFAK-GAYF-KHKFLQNAIT-QGLKLYVSEKDYEV-GIPQVIVP-----DIKKAMSLIAME 101 (481)
T ss_pred cEEEEEecCcCCCC--CCEEEEc-CCCc-hHHHHHHHHH-CCCeEEEEecccCC-CCcEEEEC-----CHHHHHHHHHHH
Confidence 38999999999999 9999999 6666 9999999999 99999999874321 57999999 99999999999
Q ss_pred HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccc---------hh--hhhhc-----ccCCCcE
Q 015950 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG---------VA--LSLIG-----IDRAVDI 187 (397)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g---------~p--~~l~~-----~~~~~~~ 187 (397)
+|++|+.++++||||||||||||++||+++|+..|. +..+.|+.++.+| .| +++++ .+.++++
T Consensus 102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~-~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~~~e~g~~~ 180 (481)
T PRK14022 102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHK-PAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAEAVDNGMTH 180 (481)
T ss_pred HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCC-CEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 666688999999999999999999999999977765 4445555444443 67 55543 3568999
Q ss_pred EEEeecCCCcchHHhhccccCCcEEEEcCCChhhhcc--CCCHHHHHHHHHHhcccCCCCcEEEEcCC-CHhHHhhcCCC
Q 015950 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNAD-DPLVANLTVPR 264 (397)
Q Consensus 188 ~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~--~gs~e~~~~~K~~i~~~~~~~~~~vln~D-d~~~~~~~~~~ 264 (397)
+|||+| |+.....|+. .++|+++|||||++||+|+ |+|+|+|+++|++||+ +++.+|+|.| |+....+....
T Consensus 181 ~v~Evs-S~~~~~~r~~-~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~ 255 (481)
T PRK14022 181 LIMEVS-SQAYLVGRVY-GLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVT 255 (481)
T ss_pred EEEEec-hhHHHhcccc-CccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhc
Confidence 999998 4432344543 5799999999999999999 9999999999999995 4689999999 65533222111
Q ss_pred CCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCe-EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 015950 265 GVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (397)
Q Consensus 265 ~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~ 343 (397)
..++++||.+..++++..+ .|.+...+. ...++++++|.||++|+++|++++..+|++++.|.++|++
T Consensus 256 ~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~- 324 (481)
T PRK14022 256 PQEHDFYGIDSENQIMASN----------AFSFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKGIAQ- 324 (481)
T ss_pred CCCEEEEecCCccceEEEE----------EEEEEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCCHHHHHHHhcc-
Confidence 2468899876444444322 233322110 0146678999999999999999999999999999999999
Q ss_pred CCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 344 ~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
.+++||||++...+++.+|+| |||||+||+++|+++++++++|+++|+.
T Consensus 325 ~~~~gR~e~i~~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G 373 (481)
T PRK14022 325 TPVPGRMEVLTQSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLG 373 (481)
T ss_pred CCCCCCeEEEECCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEEC
Confidence 999999999975467899999 9999999999999999876667777764
No 11
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-56 Score=450.30 Aligned_cols=333 Identities=25% Similarity=0.291 Sum_probs=278.7
Q ss_pred ceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccC-CC-CCccEEEEcCCCCccHHHHHHHHHH-
Q 015950 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NN-WDKGFVQVEGNGNVNTLNSLVNMAC- 123 (397)
Q Consensus 47 ~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~-~~-~~~~~i~v~~~~~~d~~~aL~~la~- 123 (397)
++++.|||++++ |+||+|++|.++|||+|+.+|++ +||.+++++... .. ..+|+|.|+ +++.++..++.
T Consensus 11 ~~l~~dsr~v~~--g~lf~a~~g~~~~g~~~~~~a~~-~Gavav~~~~~~~~~~~~~~vi~V~-----~~~~~~~~~a~~ 82 (475)
T COG0769 11 TGLTLDSRKVKE--GDLFVAKPGTKVDGHDFIAGAIA-PGAVAVVVEKDIKLAEAGVPVIVVT-----GTNGKLTTLALA 82 (475)
T ss_pred ccceeehhhcCC--CcEEEEEeccccccccchHhHhh-CCCEEEEecccccccccCCCEEEEc-----CcHHHHHHHHHH
Confidence 789999999999 99999999999999999999999 999999999654 21 267899999 99999999999
Q ss_pred HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCe--EEcCCCCcC---------ccchhhhhh-----cccCCCcE
Q 015950 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNN---------RVGVALSLI-----GIDRAVDI 187 (397)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v--~~t~g~~n~---------~~g~p~~l~-----~~~~~~~~ 187 (397)
+|..|+.++++|+||||||||||+++++++++..|.++ .+|.|...+ ..+.++.+. .+++++++
T Consensus 83 ~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 83 FYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred hccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 89998978999999999999999999999998888876 345553221 112223333 24799999
Q ss_pred EEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHh---hcCCC
Q 015950 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN---LTVPR 264 (397)
Q Consensus 188 ~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~---~~~~~ 264 (397)
++||+| ||...+.|+. .+.+++++|||+++||||||+++|+|+.+|..+|+.+++.+.+|+|.||++... .....
T Consensus 163 ~vmEvs-sh~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~ 240 (475)
T COG0769 163 AVMEVS-SHGLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNA 240 (475)
T ss_pred EEEEee-hhHHHhCCcc-CceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhc
Confidence 999998 5666777776 479999999999999999999999999999999986677889999999999843 33222
Q ss_pred CCcEEEEeccCCcce-EEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 015950 265 GVRKVFFGWRRGCDV-RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (397)
Q Consensus 265 ~~~vi~~g~~~~~d~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~ 343 (397)
..+.++||.+.+.+. ...+ ++....+..+.+........+++|++|.||++|+|+|++++..+|+|+++|.++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~--i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~ 318 (475)
T COG0769 241 LGDYITYGCDFKRPDLDYRG--IEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETL 318 (475)
T ss_pred CCCEEEeCCCCchhhhhhcc--ceeeeccceeEEEccCCceeEeccccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 247899998754322 1223 5555566666665543334899999999999999999999999999999999999999
Q ss_pred CCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 344 ~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
++++||||.+..+ ++.+++| |||||++++++|++++.+..+|+++||.
T Consensus 319 ~~v~GRmE~v~~~-~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG 366 (475)
T COG0769 319 KPVPGRMELVNIG-GKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFG 366 (475)
T ss_pred CCCCCcceEecCC-CCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEEC
Confidence 9999999999985 9999999 9999999999999999877788999983
No 12
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.9e-45 Score=356.10 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=225.9
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhh
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~ 179 (397)
++|++.=+ ++|++|-+. ...|+|+||+|||||+.||+++|++.|.....-.|..-+..|....
T Consensus 90 ~ipi~~r~--------e~Laelm~~-------~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~g~na~-- 152 (459)
T COG0773 90 GIPVISRA--------EMLAELMRF-------RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNAR-- 152 (459)
T ss_pred CCCeEcHH--------HHHHHHHhC-------CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccCCcccc--
Confidence 68888444 555555543 3579999999999999999999999988875455543333333221
Q ss_pred cccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHh
Q 015950 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (397)
Q Consensus 180 ~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~ 259 (397)
....+|.|.|++++.. .-+ -.+|+++|+|||..||+|+|++++++.++...+++.++..|.+|+|.|||.+++
T Consensus 153 --~g~~~~fV~EADEsD~---sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~ 225 (459)
T COG0773 153 --LGSGDYFVAEADESDS---SFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRE 225 (459)
T ss_pred --cCCCceEEEEeccccc---ccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEEECCCHHHHH
Confidence 1334899999998765 222 269999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecC-eEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHH
Q 015950 260 LTVP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337 (397)
Q Consensus 260 ~~~~-~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~ 337 (397)
+..+ ...++++||.+.++|+++.+ ++....+..|++...+ ...++.+|++|+||+.|+++|+|+|..+|++.+.|+
T Consensus 226 l~~~~~~~~v~tyG~~~~ad~~a~n--i~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~ 303 (459)
T COG0773 226 LLSRGCWSPVVTYGFDDEADWRAEN--IRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIA 303 (459)
T ss_pred HHhcccCCcEEeecCCCcCcEEEEE--eEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 7722 33679999998669999999 9998888888886653 344899999999999999999999999999999999
Q ss_pred HHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCC--CeEEEEEe
Q 015950 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC--NVVQCKWR 393 (397)
Q Consensus 338 ~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~--~rv~~v~~ 393 (397)
++|++|+++.+|||+....+++++||| |||+|..+++.|+++|+..+ +||+++||
T Consensus 304 ~aL~~F~GvkRRfe~~g~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~~~rIvaifQ 360 (459)
T COG0773 304 EALASFQGVKRRFELKGEVNGVTVIDD-YAHHPTEIKATLAAARQKVPGGKRIVAVFQ 360 (459)
T ss_pred HHHHhCCCcceeeEEeeeECCEEEEec-CCCCHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 999999999999998887789999999 99999999999999998653 89999996
No 13
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4.9e-44 Score=364.50 Aligned_cols=249 Identities=25% Similarity=0.357 Sum_probs=204.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCC-eEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~-v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ 210 (397)
.++|+||||||||||+.||+++|+..|++ +....|+.++. +.+.. ..+.+++|+|+|+++. .. ..++|+
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~-~~~~~----~~~~~~~V~E~ss~q~-~~----~~~~p~ 176 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA-GTNAR----LGNSDYFVAEADESDR-SF----LKLHPD 176 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC-Ccccc----cCCCCEEEEECCCccc-hH----hhcCCC
Confidence 37999999999999999999999999864 33344544332 44432 2467999999996543 22 247999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecC
Q 015950 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (397)
Q Consensus 211 iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (397)
++|||||++||+|+|||+|+|+++|.+++..+++++.+|+|.||+....+..+..+++++||....+++...+ +....
T Consensus 177 vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 254 (461)
T PRK00421 177 IAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAEN--IRQDG 254 (461)
T ss_pred EEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEE--EEEcC
Confidence 9999999999999999999999999999998888899999999998877762222678999986666777766 65555
Q ss_pred CeEEEEEeecCe-EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 291 LGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 291 ~~~~~~~~~~~~-~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
++..|.+...+. ...++++++|.||++|+++|++++..+|+++++|.++|++|++++||||++...+++.+|+| ||||
T Consensus 255 ~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~lgv~~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D-~aHn 333 (461)
T PRK00421 255 GGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIREALATFKGVKRRFEEKGEVGGVVLIDD-YAHH 333 (461)
T ss_pred CceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcccEEEEecCCcEEEEe-CCCC
Confidence 566777654322 22478899999999999999999999999999999999999999999999987668899999 9999
Q ss_pred HHHHHHHHHHHhccC-CCeEEEEEe
Q 015950 370 PISTRAAIDLLKDIA-CNVVQCKWR 393 (397)
Q Consensus 370 p~s~~~~l~~l~~~~-~~rv~~v~~ 393 (397)
|+++++++++++.+. ++|+++||+
T Consensus 334 p~~~~a~~~al~~~~~~~~i~~v~g 358 (461)
T PRK00421 334 PTEIKATLKAARQGYPDKRIVAVFQ 358 (461)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 999999999999864 478888885
No 14
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-44 Score=363.57 Aligned_cols=284 Identities=26% Similarity=0.301 Sum_probs=218.9
Q ss_pred eCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHHHhhcCCCC
Q 015950 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS 131 (397)
Q Consensus 52 dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~ 131 (397)
+++.+++ .++||+.+|-..| |.++.+|.+ +|+ |++ .+ . +. ++..+ +
T Consensus 59 ~~~~~~~--~d~vv~spgi~~~-~~~~~~a~~-~g~--------------~v~-~~------~-el---~~~~~-----~ 104 (438)
T PRK03806 59 NDEWLLA--ADLIVASPGIALA-HPSLSAAAD-AGI--------------EIV-GD------I-EL---FCREA-----Q 104 (438)
T ss_pred CHHHhcC--CCEEEECCCCCCC-CHHHHHHHH-CCC--------------eEE-EH------H-HH---Hhhhc-----C
Confidence 4566777 8999999999988 999999999 875 322 22 1 11 12222 2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
.++|+||||||||||++||+++|+..|.++. +.|| +|.|.. ..+..+.+++|+|+|+++. +.+..++|++
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----ig~p~~-~~~~~~~~~~V~E~ss~~l----~~~~~~~p~i 174 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVG-VGGN----IGLPAL-SLLDQECELYVLELSSFQL----ETTSSLKAAA 174 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EeCC----cchhHH-HhhccCCCEEEEEccchhh----ccCcccCCCE
Confidence 4699999999999999999999988888763 5565 677752 2345677999999997654 2345689999
Q ss_pred EEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecC
Q 015950 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (397)
Q Consensus 212 aViTNi~~dHld~~-gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (397)
+|||||++||+|+| +|+|+|+++|.+|++. .+.+|+|.||+....+... ..++++||.+. .++.+.. .
T Consensus 175 aViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~---- 243 (438)
T PRK03806 175 ATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DKRCVSFGVNM-GDYHLNR--Q---- 243 (438)
T ss_pred EEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhcC-CceEEEEecCC-CceEEEe--c----
Confidence 99999999999999 6999999999999974 4789999999988775422 25688888643 3554432 1
Q ss_pred CeEEEEEeecCe-EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 291 LGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 291 ~~~~~~~~~~~~-~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
.+..+.+...+. ...++++++|.||++|+++|++++..+|++++++.++|++|++++||||++...+++.+|+|+||||
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n 323 (438)
T PRK03806 244 QGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEHNGVRWINDSKATN 323 (438)
T ss_pred CCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeEEEEEeeCCEEEEEcCCCCC
Confidence 122222221111 1146789999999999999999999999999999999999999999999987657889999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEE
Q 015950 370 PISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 370 p~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
|+|++++++.++. .+++++++
T Consensus 324 ~~a~~~al~~l~~--~~~~i~Il 344 (438)
T PRK03806 324 VGSTEAALNGLHV--DGTLHLLL 344 (438)
T ss_pred HHHHHHHHHhCcc--CCcEEEEE
Confidence 9999999999973 23455544
No 15
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.3e-43 Score=360.12 Aligned_cols=246 Identities=21% Similarity=0.235 Sum_probs=200.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhCCCCeE----EcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccc--
Q 015950 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF----QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM-- 206 (397)
Q Consensus 133 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~----~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~-- 206 (397)
++||||||||||||++||+++|++.|+++. ++.|| +|.|..+ .+.+++|+|+|+++.+++.++.++
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn----~G~~~~~----~~~~~~V~E~~s~~~~~~~~l~~~~~ 174 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN----FGVSARL----GESPFFVIEADEYDTAFFDKRSKFVH 174 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc----Ccccccc----CCCCEEEEEccCcCccccccccceee
Confidence 499999999999999999999998888752 44566 4677642 357999999999998877777666
Q ss_pred cCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcC-CCCCcEEEEeccCCcceEEEece
Q 015950 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285 (397)
Q Consensus 207 i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~-~~~~~vi~~g~~~~~d~~~~~~~ 285 (397)
++|+++|||||++||+|+|+|+|+|+++|.+|++.+++++.+|+|.||+.+..+.. ....++.+||.. .+++...
T Consensus 175 ~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 250 (448)
T TIGR01081 175 YRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ--GEWQAEK-- 250 (448)
T ss_pred cCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCC--CCEEEEE--
Confidence 69999999999999999999999999999999998777789999999998876542 111356677632 3565555
Q ss_pred EEecCCeEEEEEeecC-eEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEe
Q 015950 286 VANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVND 364 (397)
Q Consensus 286 i~~~~~~~~~~~~~~~-~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~D 364 (397)
+. .++..|.+...+ ....++++++|.||++|+++|++++..+|++.+.+.++|++|++++||||++...+++.+|+|
T Consensus 251 ~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D 328 (448)
T TIGR01081 251 IT--ADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKRRLELKGEANGITVYDD 328 (448)
T ss_pred Ee--cCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCeEEEEe
Confidence 53 234455554321 222578899999999999999999999999999999999999999999999875567899999
Q ss_pred cCCCCHHHHHHHHHHHhccC-CCeEEEEEe
Q 015950 365 AYNANPISTRAAIDLLKDIA-CNVVQCKWR 393 (397)
Q Consensus 365 syahnp~s~~~~l~~l~~~~-~~rv~~v~~ 393 (397)
|||||+|++++++++++.. .+|+++||+
T Consensus 329 -~ahNp~s~~~~l~~l~~~~~~~~ii~I~g 357 (448)
T TIGR01081 329 -FAHHPTAIEATLQGLRQKVGGARILAVLE 357 (448)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 6999999999999999753 467777763
No 16
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.9e-43 Score=359.36 Aligned_cols=229 Identities=28% Similarity=0.399 Sum_probs=184.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhh-hhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 133 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~-l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
++||||||||||||++||+++|+..|+++. +.|| +|.|++ .+....+.+++|+|+|+++. .+...++||+
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gn----ig~p~~~~l~~~~~~~~~V~E~ss~~l----~~~~~~~pdi 192 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQ-AVGN----IGVPVSAALVAQPRIDVLVAELSSFQL----HWSPTLTPDV 192 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEE-Eecc----CChhHHHHHhcCCCCCEEEEecCCccc----ccCcccCCCE
Confidence 699999999999999999999988888764 6777 677765 34445678999999997654 2335689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC-CCCcEEEEeccCCc--c--eEEEeceE
Q 015950 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC--D--VRLVAAQV 286 (397)
Q Consensus 212 aViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~--d--~~~~~~~i 286 (397)
+|||||++||||+|+|+|+|+++|.++|+ .+.+|+|.||+++..+..+ ...++++||..... + +...+ +
T Consensus 193 aViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 266 (473)
T PRK00141 193 GVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPVAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGE--L 266 (473)
T ss_pred EEEcCCChhhccccCCHHHHHHHHHHHhh----CCEEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCE--E
Confidence 99999999999999999999999999996 3689999999998877521 12468899975322 2 22222 3
Q ss_pred EecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecC
Q 015950 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (397)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsy 366 (397)
.....+..+.+.. .+.+|++|.||++|+++|++++..+|++.+.+.++|++|++++||||++...++..+|||+|
T Consensus 267 ~~~~~~~~~~~~~-----~~~~~l~G~hn~~Na~aA~a~~~~lgi~~~~i~~~l~~~~~~~~R~e~~~~~~~~~iiDdsy 341 (473)
T PRK00141 267 VDNAFGQNVVLAS-----AEGISPAGPAGVLDALAAAAVARSQGVAPEAIARALSSFEVAGHRGQVVAEHGGVTWIDNSK 341 (473)
T ss_pred EEecCCCceEEee-----hhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCEEEEEcCC
Confidence 2222222232221 24678999999999999999999999999999999999999899999987656889999989
Q ss_pred CCCHHHHHHHHHHHh
Q 015950 367 NANPISTRAAIDLLK 381 (397)
Q Consensus 367 ahnp~s~~~~l~~l~ 381 (397)
||||+|+++++++++
T Consensus 342 ahNp~s~~~~l~~l~ 356 (473)
T PRK00141 342 ATNPHAADAALAGHE 356 (473)
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999999985
No 17
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.9e-43 Score=355.61 Aligned_cols=238 Identities=24% Similarity=0.308 Sum_probs=189.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
.++|+||||||||||++||+++|+..|.++. +.|| +|.|... .+..+.+++|+|+|+++. ++ ...++|++
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----iG~~~~~-~~~~~~~~~V~E~ss~~l---~~-~~~~~p~i 177 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVA-VGGN----IGVPALD-LLEQDAELYVLELSSFQL---ET-TSSLKLKA 177 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE-EEcc----cCHHHHh-hhcCCCCEEEEEcChhhh---cc-CcccCCCE
Confidence 5799999999999999999999988888763 5565 6887632 345677999999997764 22 34689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCC
Q 015950 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (397)
Q Consensus 212 aViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~ 291 (397)
+|||||++||||+|+|+|+|+++|.++|+. .+.+|+|.||+....... ..++++||.+. .++.+.. ..
T Consensus 178 avitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~dd~~~~~~~~--~~~~~~~g~~~-~~~~~~~------~~ 245 (438)
T PRK04663 178 AAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNRDDKQTYPDHA--ELQLVTFGFDQ-QDFGLAQ------HQ 245 (438)
T ss_pred EEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeCCCHHHHhhhc--CCcEEEEecCC-CCCCeEe------cC
Confidence 999999999999999999999999999975 379999999998754432 25789999754 2443221 12
Q ss_pred eEEEEEeecCe-EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCH
Q 015950 292 GVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370 (397)
Q Consensus 292 ~~~~~~~~~~~-~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp 370 (397)
+..|.+...+. ...++++++|.||++|+++|++++..+|+++++|.++|++|++++||||++...+++++|||+||+||
T Consensus 246 ~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idDs~~tn~ 325 (438)
T PRK04663 246 GREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNV 325 (438)
T ss_pred CeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeeeCCcEEEeCCCcCCH
Confidence 33444432211 12467899999999999999999999999999999999999999999999976578999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEEE
Q 015950 371 ISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 371 ~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
+|+.++|+.+. .+++++++++
T Consensus 326 ~s~~~Al~~~~-~~~~~i~IlG 346 (438)
T PRK04663 326 ASTLAALSGLE-IEGKLYLLVG 346 (438)
T ss_pred HHHHHHHHhcc-cCCcEEEEEC
Confidence 99999999886 2233444443
No 18
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.3e-43 Score=353.90 Aligned_cols=234 Identities=24% Similarity=0.305 Sum_probs=186.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
.++||||||||||||+.||+++|+..|.++ ...|| +|.|. ++...+.+++|+|+|+++. . ....++|++
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~--l~~~~~~~~~VlE~ss~ql---~-~~~~~~P~i 172 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDY-PVAGN----IGVPA--LQAKASKDGYVLELSSFQL---D-LVKTFTAKI 172 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEEcc----CCHHH--hcccCCCCEEEEEcCchhh---c-cccccCCCE
Confidence 579999999999999999999999888876 35566 67774 3445557999999997654 2 234579999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcC----CCCCcEEEEeccCCcceEEEeceEE
Q 015950 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVA 287 (397)
Q Consensus 212 aViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~ 287 (397)
+|||||++||||+|+|+|+|+++|.+||+++++++.+|+|.||+....+.. ....++++||.....+. . +.
T Consensus 173 avitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~---~--~~ 247 (454)
T PRK01368 173 AVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILEN---G--IS 247 (454)
T ss_pred EEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCC---C--cE
Confidence 999999999999999999999999999998888899999999998877641 11247889986532111 1 11
Q ss_pred ecCCeEEEEEeec-CeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecC
Q 015950 288 NGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (397)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsy 366 (397)
...+...+.+... .....+.++++|.||++|+++|++++..+|++.+.|.++|++|+++|||||++...+++.+|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~ 327 (454)
T PRK01368 248 VVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSK 327 (454)
T ss_pred EECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEEECCeEEEECCC
Confidence 1122222222111 011256678999999999999999999999999999999999999999999998767899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 015950 367 NANPISTRAAIDLLK 381 (397)
Q Consensus 367 ahnp~s~~~~l~~l~ 381 (397)
||||+|+++++++++
T Consensus 328 atN~~a~~~al~~~~ 342 (454)
T PRK01368 328 ATNAISAVQSIKALD 342 (454)
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999999984
No 19
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=5.6e-43 Score=354.28 Aligned_cols=230 Identities=30% Similarity=0.422 Sum_probs=185.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchh-hhhhcccCCCcEEEEeecCCCcchHHhhccccCC
Q 015950 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA-LSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (397)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p-~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p 209 (397)
+.++|+||||||||||++||+++|+..|.++. ..|| +|.| +++... .+.+++|+|+|+++. + ....++|
T Consensus 101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~-~~gn----ig~~~~~~~~~-~~~~~~V~E~~~~~l---~-~~~~~~p 170 (433)
T TIGR01087 101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAF-LGGN----IGTPALEVLDQ-EGAELYVLELSSFQL---E-TTESLRP 170 (433)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeE-EECc----cCHHHHHHHhc-cCCCEEEEEcChhHh---c-CCcccCC
Confidence 35799999999999999999999998888753 4565 6776 443332 578999999985432 3 3446799
Q ss_pred cEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEec
Q 015950 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289 (397)
Q Consensus 210 ~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~ 289 (397)
+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+..+...++++||.+...+.. +...
T Consensus 171 ~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~ 245 (433)
T TIGR01087 171 EIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFSVEKDAERG-----LCIR 245 (433)
T ss_pred CEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHhhhhcCceEEEEeCCccCCCc-----eEEE
Confidence 99999999999999999999999999999998888899999999998776653223688999965432221 1111
Q ss_pred CCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
.++..+.. . .++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++++|+|+|+||
T Consensus 246 ~~~~~~~~--~----~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idD~~atn 319 (433)
T TIGR01087 246 DGGLYLKP--N----DLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVHFYNDSKATN 319 (433)
T ss_pred CCEEEEec--c----ccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEEcCCCCC
Confidence 12222211 1 36789999999999999999999999999999999999999999999987657899999977999
Q ss_pred HHHHHHHHHHHh
Q 015950 370 PISTRAAIDLLK 381 (397)
Q Consensus 370 p~s~~~~l~~l~ 381 (397)
|+|+.++++.++
T Consensus 320 ~~a~~~al~~~~ 331 (433)
T TIGR01087 320 VHATLAALSAFD 331 (433)
T ss_pred HHHHHHHHHhCC
Confidence 999999999884
No 20
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-43 Score=359.78 Aligned_cols=237 Identities=26% Similarity=0.300 Sum_probs=190.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhh--hhcccCCCcEEEEeecCCCcchHHhhccccC
Q 015950 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS--LIGIDRAVDIAVLEMGMSGKGEILELARMAR 208 (397)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~--l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~ 208 (397)
+.++||||||||||||++||+++|+..|.++. +.|| +|.|++ +... .+.+++|+|+|+++.+++. ++
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~-~~gn----iG~p~~~~~~~~-~~~~~~VlE~~~~~~~~~~-----~~ 184 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW-VGGN----IGTPLFSNIEEI-KEEDKVVLELSSFQLMTMD-----VS 184 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEE-ECCc----cChhHHHHHhhC-CCCCEEEEEcCccccccCC-----CC
Confidence 35799999999999999999999988888763 5666 788875 3333 3689999999998876542 69
Q ss_pred CcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCC---cceEEEece
Q 015950 209 PEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG---CDVRLVAAQ 285 (397)
Q Consensus 209 p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~---~d~~~~~~~ 285 (397)
||++|||||++||||+|+|+|+|+++|.++|+.+++++.+|+|.||+....+......++++||...+ .++.. +
T Consensus 185 PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~-- 261 (458)
T PRK01710 185 PEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLK-N-- 261 (458)
T ss_pred CCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEe-C--
Confidence 99999999999999999999999999999999888889999999999887765221257889986432 12211 1
Q ss_pred EEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEec
Q 015950 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (397)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Ds 365 (397)
. .+.+.+......++++++|.||++|+++|++++..+ +++++|.++|++|++++||||.+...+++++|+||
T Consensus 262 -----~--~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g~~~i~Ds 333 (458)
T PRK01710 262 -----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREINGVKYYNDS 333 (458)
T ss_pred -----C--EEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECCEEEeccc
Confidence 0 111111101114678999999999999999999987 99999999999999999999998755789999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCeEEEEE
Q 015950 366 YNANPISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 366 yahnp~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
|||||+||.++|+++.. +++++.+
T Consensus 334 y~~np~s~~~al~~~~~---~~i~IlG 357 (458)
T PRK01710 334 IASSPTRTLAGLKAFEK---PVILIAG 357 (458)
T ss_pred ccCCHHHHHHHHHhCCC---CEEEEeC
Confidence 99999999999998853 4565554
No 21
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.6e-43 Score=357.42 Aligned_cols=272 Identities=27% Similarity=0.339 Sum_probs=204.8
Q ss_pred CcEEEEecccCCCC-CccEEEEcCCCCccHHHH----HHHHHHHhhcC---CCCCcEEEEcCCCChHHHHHHHHHHHHhC
Q 015950 86 GCVGVIGNQVCNNW-DKGFVQVEGNGNVNTLNS----LVNMACYARNS---RFSGVLVGVTGSVGKSTTKSMIALALESL 157 (397)
Q Consensus 86 GA~~vv~~~~~~~~-~~~~i~v~~~~~~d~~~a----L~~la~~~~~p---~~~~~vI~VTGTnGKTTT~~~l~~iL~~~ 157 (397)
++..||.++.++.. .-|...|. +.+++ +.++..+++.- ..+.++|+||||||||||++||+++|+..
T Consensus 65 ~~d~vv~sp~i~~~~~~~~~~v~-----~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 65 GFAALVLSPGVPLTHPKPHWVVD-----LARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred CCCEEEECCCCCccCCcccHHHH-----HHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 56677777765421 11233455 66665 55555433320 23568999999999999999999999888
Q ss_pred CCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHH
Q 015950 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237 (397)
Q Consensus 158 g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~ 237 (397)
|+++. +.|| +|.|++.+....+.+++|+|+|+++ + +.++.++|+++|||||+.||+++|||+|+|+++|++
T Consensus 140 g~~~~-~~gn----ig~~~~~~~~~~~~~~~V~E~~~~~---l-d~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ 210 (460)
T PRK01390 140 GRDVQ-MGGN----IGTAVLTLEPPPAGRVYVLELSSYQ---I-DLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKER 210 (460)
T ss_pred CCCeE-EcCc----cchhhhhcccCCCCCEEEEEcCccc---c-ccccccCCCEEEEecCChhHhcccCCHHHHHHHHHH
Confidence 88763 4565 7888776665567899999999654 2 455678999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEcCCCHhHHhhcCC---CCCcEEEEeccCC--cceEEEeceEEecCCeEEEEEeecCe--EEEE--Ee
Q 015950 238 IFQESKLGDVCVLNADDPLVANLTVP---RGVRKVFFGWRRG--CDVRLVAAQVANGGLGVQVVLEKERE--MVKF--VI 308 (397)
Q Consensus 238 i~~~~~~~~~~vln~Dd~~~~~~~~~---~~~~vi~~g~~~~--~d~~~~~~~i~~~~~~~~~~~~~~~~--~~~~--~l 308 (397)
|++..++ +.+|+|.||+....+... .++++++||.+.. .+++..+ +..|....... .+.+ .+
T Consensus 211 ii~~~~~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 281 (460)
T PRK01390 211 LFAGQGP-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADG--------GKLVDARGGRQVEIADLRGIP 281 (460)
T ss_pred HHhcCCC-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEeC--------CEEEEecCCCcceeeeHHhhc
Confidence 9998766 899999999987766511 2357888886532 2222211 22232221100 0111 15
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 015950 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (397)
Q Consensus 309 ~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l 380 (397)
+++|.||++|+++|++++..+|++++.|.++|++|++++||||++...++..+|+|||||||+|++++|+.+
T Consensus 282 ~l~G~hn~~Na~aAiaa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~ 353 (460)
T PRK01390 282 SLPGAHNAQNAAAAYAAARALGLSPEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF 353 (460)
T ss_pred cCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999999999865678999999999999999998875
No 22
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=2.8e-42 Score=350.39 Aligned_cols=249 Identities=23% Similarity=0.311 Sum_probs=199.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCe-EEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ 210 (397)
.++|+||||||||||+.||+++|+..|+.. ....|+. +.|.. .......+++|+|+|+++. .. ..++|+
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~----~~~~~-~~~~~~~~~~V~E~s~~q~-~~----~~~~p~ 168 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLV----KEAGT-NARLGSGEYLVAEADESDA-SF----LHLQPN 168 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECccc----ccCCc-ccccCCCCEEEEECCCccc-hH----hhccCC
Confidence 379999999999999999999999888732 2222332 21110 0111346999999997654 22 247999
Q ss_pred EEEEcCCChhhhc-cCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEecc-CCcceEEEeceEEe
Q 015950 211 IRVVLNVGDSHLE-SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVAN 288 (397)
Q Consensus 211 iaViTNi~~dHld-~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~-~~~d~~~~~~~i~~ 288 (397)
++|||||++||+| +|+|+|+|+++|.++++.+++++.+|+|.||+....+......++++||.. +.+++++.+ +..
T Consensus 169 vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~ 246 (448)
T TIGR01082 169 VAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAEN--IQQ 246 (448)
T ss_pred EEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEE--EEe
Confidence 9999999999999 999999999999999998888899999999998877762222478899875 345777666 554
Q ss_pred cCCeEEEEEeecC-eEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCC
Q 015950 289 GGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (397)
Q Consensus 289 ~~~~~~~~~~~~~-~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsya 367 (397)
...+..|.+...+ ....++++++|.||++|+++|++++..+|++.+.+.++|++|+++++|||++...+++++|+| ||
T Consensus 247 ~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D-~a 325 (448)
T TIGR01082 247 SGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAILRALANFQGVKRRFEILGEFGGVLLIDD-YA 325 (448)
T ss_pred cCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCccceEEEEeCCeEEEEc-CC
Confidence 4445666665432 223678899999999999999999999999999999999999999999999976578999999 99
Q ss_pred CCHHHHHHHHHHHhccC-CCeEEEEEe
Q 015950 368 ANPISTRAAIDLLKDIA-CNVVQCKWR 393 (397)
Q Consensus 368 hnp~s~~~~l~~l~~~~-~~rv~~v~~ 393 (397)
|||+++++++++++.+. .+|++++|+
T Consensus 326 hn~~~~~a~~~al~~~~~~~~ii~i~g 352 (448)
T TIGR01082 326 HHPTEIKATLKAARQGYPDKRIVVVFQ 352 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 99999999999999974 568888874
No 23
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.7e-42 Score=351.79 Aligned_cols=264 Identities=25% Similarity=0.312 Sum_probs=202.0
Q ss_pred CCcEEEEecccCCC--C--------CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHH
Q 015950 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 85 ~GA~~vv~~~~~~~--~--------~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL 154 (397)
.++..||.++.++. | ++|++.-. +.+ +...+ ..+.++|+||||||||||++||+++|
T Consensus 66 ~~~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~--------~~~---~~~~~--~~~~~~I~ITGT~GKTTTt~li~~iL 132 (445)
T PRK04308 66 NGFDILALSPGISERQPDIEAFKQNGGRVLGDI--------ELL---ADIVN--RRGDKVIAITGSNGKTTVTSLVGYLC 132 (445)
T ss_pred hCCCEEEECCCCCCCCHHHHHHHHcCCcEEEhH--------HHH---HHhhh--cCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 46778888876552 1 55665222 222 22222 12357999999999999999999999
Q ss_pred HhCCCCeEEcCCCCcCccchhhhhhcc---cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHH
Q 015950 155 ESLGVNVFQSYGNWNNRVGVALSLIGI---DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDV 231 (397)
Q Consensus 155 ~~~g~~v~~t~g~~n~~~g~p~~l~~~---~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~ 231 (397)
+..|.++ ...|| +|.|+..... ..+.|++|+|+|+++. +. ...++|+++|||||++||+++|+|+|+|
T Consensus 133 ~~~g~~~-~~~Gn----iG~~~~~~~~~~~~~~~d~~VlE~~~~~l---~~-~~~~~p~iaviTNI~~DHld~~~t~e~~ 203 (445)
T PRK04308 133 IKCGLDT-VIAGN----IGTPVLEAELQREGKKADVWVLELSSFQL---EN-TESLRPTAATVLNISEDHLDRYDDLLDY 203 (445)
T ss_pred HHcCCCe-EEeCC----ccHHHHHHHHhhcCCCCcEEEEEeChHHh---Cc-CcccCCCEEEEecCChHHhcccCCHHHH
Confidence 8888775 45676 7777644322 3478999999996433 33 4568999999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCC
Q 015950 232 ARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (397)
Q Consensus 232 ~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 311 (397)
+++|++|++. ++.+|+|.||+....+... +.++++||....+|+.... . .+ .+.+.+......++++++
T Consensus 204 ~~~K~~i~~~---~~~~i~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~--~----~~-~~~~~~~~~~~~~~l~l~ 272 (445)
T PRK04308 204 AHTKAKIFRG---DGVQVLNADDAFCRAMKRA-GREVKWFSLEHEADFWLER--E----TG-RLKQGNEDLIATQDIPLQ 272 (445)
T ss_pred HHHHHHHhcC---CCEEEEeCCcHHHHHHhhc-CCcEEEecCCCCCceeEec--c----CC-EEEEcCceeeehhccCCc
Confidence 9999999953 6899999999988776522 3678899876555654332 1 11 132222211113578999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHh
Q 015950 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381 (397)
Q Consensus 312 G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~ 381 (397)
|.||++|+++|++++..+|++++++.++|++|++++||||++...+++++|||+|+|||+|++++++.+.
T Consensus 273 G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~ 342 (445)
T PRK04308 273 GLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ 342 (445)
T ss_pred ChhhHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998767889999999999999999999873
No 24
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-42 Score=344.79 Aligned_cols=240 Identities=29% Similarity=0.398 Sum_probs=190.5
Q ss_pred HHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhh-hhhcccCCCcEEEEeecCCCcch
Q 015950 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL-SLIGIDRAVDIAVLEMGMSGKGE 199 (397)
Q Consensus 121 la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~-~l~~~~~~~~~~VlE~~~~~~~~ 199 (397)
+-.+++. ....|+|+||||||||||+.||+++|++.|+++. ..|| +|.|. ++.....+.|+.|+|+|+-+.
T Consensus 100 ieL~~r~-~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~-lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQL-- 171 (448)
T COG0771 100 IELFYRL-SGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL-LGGN----IGTPALELLEQAEPADVYVLELSSFQL-- 171 (448)
T ss_pred HHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce-eccc----cCccHHHhhcccCCCCEEEEEcccccc--
Confidence 3334444 2346799999999999999999999999999873 4577 77775 334445678999999986544
Q ss_pred HHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC-CCCcEEEEeccCCc-
Q 015950 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC- 277 (397)
Q Consensus 200 ~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~- 277 (397)
+... -++|++++||||++||||||+|||+|..+|.+|+.++.+ ++|+|.||+++..+... ....+++|+.....
T Consensus 172 -~~~~-~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~~~ 247 (448)
T COG0771 172 -ETTS-SLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEATKARVIWFSFGEPLA 247 (448)
T ss_pred -ccCc-cCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeCCcHHHhhhhhhcccceeEEEEcccccc
Confidence 4443 479999999999999999999999999999999998654 99999999999888722 22466777765432
Q ss_pred -ceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeec
Q 015950 278 -DVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356 (397)
Q Consensus 278 -d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~ 356 (397)
.+++.++.+ . +.+..-...-.++++|.||++|+++|+++|..+|++++.+.++|.+|+++++|||.+...
T Consensus 248 ~~~~~~~~~~-------~--~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~ 318 (448)
T COG0771 248 DGDYIYDGKL-------V--FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEK 318 (448)
T ss_pred ccceeecchh-------c--cccccccchhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEec
Confidence 233333111 0 111100002367899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHh
Q 015950 357 SGIKIVNDAYNANPISTRAAIDLLK 381 (397)
Q Consensus 357 ~~~~vi~Dsyahnp~s~~~~l~~l~ 381 (397)
+++.+|+||.|.||+|..++|+.+.
T Consensus 319 ~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 319 DGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred CCEEEecCCCCCCHHHHHHHHHcCC
Confidence 9999999999999999999988877
No 25
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.8e-42 Score=353.72 Aligned_cols=324 Identities=26% Similarity=0.255 Sum_probs=219.9
Q ss_pred ccHHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC------C-
Q 015950 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN------W- 99 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~------~- 99 (397)
|++..++...|..+ ...|++...+....|+-+..|.+++...|.++.+. ++..||+++.++. |
T Consensus 20 ~s~a~~L~~~G~~v--------~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~~~~~~~~~~ 89 (498)
T PRK02006 20 LAMARWCARHGARL--------RVADTREAPPNLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLSPLEAALAPL 89 (498)
T ss_pred HHHHHHHHHCCCEE--------EEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCCCcccccCHH
Confidence 45666766665432 23565554330012433323444444555566565 7888888875532 1
Q ss_pred -------CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCcc
Q 015950 100 -------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRV 172 (397)
Q Consensus 100 -------~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~ 172 (397)
++|++.-. +...+.+..+ ..|.+..++|+||||||||||++||+++|+..|+++. ..||.+
T Consensus 90 ~~~a~~~~i~v~~~~----e~~~~~~~~l----~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gni~--- 157 (498)
T PRK02006 90 VAAARERGIPVWGEI----ELFAQALAAL----GASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA-VAGNIS--- 157 (498)
T ss_pred HHHHHHCCCcEEEHH----HHHHHHHhhh----ccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE-EECCCC---
Confidence 56776322 0222222222 2223345899999999999999999999999998874 456643
Q ss_pred chhhh--hhc-ccCC--CcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcE
Q 015950 173 GVALS--LIG-IDRA--VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDV 247 (397)
Q Consensus 173 g~p~~--l~~-~~~~--~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~ 247 (397)
.+.. +.+ +..+ .+++|+|+|+++. .....++|+++|||||++||+|+|+|+|+|+++|.++|+ +++.
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~V~E~ss~~l----~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~---~~~~ 229 (498)
T PRK02006 158 -PAALDKLMEAIDAGALPDVWVLELSSFQL----ETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG---PRTV 229 (498)
T ss_pred -HHHHHHHHHhhccCCCCcEEEEEccHHHh----CcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC---CCCE
Confidence 2211 111 2233 4899999986433 233467999999999999999999999999999999996 4789
Q ss_pred EEEcCCCHhHHhhcCC-CCCcEEEEeccCC---cceEEEe--c-eEEecCCeEEEEEeec-----C-----------eEE
Q 015950 248 CVLNADDPLVANLTVP-RGVRKVFFGWRRG---CDVRLVA--A-QVANGGLGVQVVLEKE-----R-----------EMV 304 (397)
Q Consensus 248 ~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~---~d~~~~~--~-~i~~~~~~~~~~~~~~-----~-----------~~~ 304 (397)
+|+|.|||....+... ...++++||.... .++.+.. + .+........|.+... + ...
T Consensus 230 ~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
T PRK02006 230 RVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLM 309 (498)
T ss_pred EEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccccccccccccccchhcee
Confidence 9999999998877622 1246889987531 2443321 0 0001111111111000 0 011
Q ss_pred E-EEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 015950 305 K-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (397)
Q Consensus 305 ~-~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l 380 (397)
. ++++++|.||++|+++|++++..+|++++.+.++|++|++++||||++...+++.+|||+|+|||+|+.++++.+
T Consensus 310 ~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~~s~~~al~~~ 386 (498)
T PRK02006 310 PADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGATVAALDGL 386 (498)
T ss_pred eHhhcCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhC
Confidence 1 468999999999999999999999999999999999999999999999765788999999999999999999886
No 26
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-42 Score=352.48 Aligned_cols=229 Identities=28% Similarity=0.348 Sum_probs=176.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEE
Q 015950 133 VLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIR 212 (397)
Q Consensus 133 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ia 212 (397)
++||||||||||||++||+++|+..|.++ .+.|| +|.|+. ..+..+.+++|+|+|+. ++.++ ..++|+++
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~-~~~Gn----iG~p~~-~~~~~~~~~~VlE~ss~---ql~~~-~~~~P~va 187 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRS-VLCGN----IGSPVL-DVLDEPAELLAVELSSF---QLHWA-PSLRPEAG 187 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCce-EEeCC----CchHHH-HhccCCCCEEEEECChH---HhCcc-cccCCCEE
Confidence 69999999999999999999998888754 45676 788862 22356789999999954 33444 56899999
Q ss_pred EEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCC-CCcEEEEeccC--CcceEEEeceEEec
Q 015950 213 VVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRR--GCDVRLVAAQVANG 289 (397)
Q Consensus 213 ViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~-~~~vi~~g~~~--~~d~~~~~~~i~~~ 289 (397)
|||||++||+|+|||+|+|+++|++||+ ++.+|+|.||+....+.... ....+.|+... ..++.+.+..+...
T Consensus 188 VITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (488)
T PRK03369 188 AVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDR 263 (488)
T ss_pred EEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCEEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEe
Confidence 9999999999999999999999999996 37899999999887665211 12233443322 12332222001000
Q ss_pred CCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
.+... ......++++++|.||++|+++|++++..+|++++.+.++|++|++++||||++...+++.+||||||||
T Consensus 264 ----~~~~~-~~~~~~~~l~l~G~hnv~NalaAla~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~~~~gv~iIDDS~AhN 338 (488)
T PRK03369 264 ----AFADD-LRLAPVASIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVADGITYVDDSKATN 338 (488)
T ss_pred ----ccCCc-cceechhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEEEcCCCEEEEECCCCCC
Confidence 00000 0000035778999999999999999999999999999999999999999999998767889999999999
Q ss_pred HHHHHHHHHHH
Q 015950 370 PISTRAAIDLL 380 (397)
Q Consensus 370 p~s~~~~l~~l 380 (397)
|+|++++|+.+
T Consensus 339 p~s~~aal~~~ 349 (488)
T PRK03369 339 PHAARASILAY 349 (488)
T ss_pred HHHHHHHHHhC
Confidence 99999999866
No 27
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8e-42 Score=347.20 Aligned_cols=241 Identities=24% Similarity=0.261 Sum_probs=189.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
.++|+||||||||||+.||+++|+..|+++ ...|| +|.|... .+..+.+++|+|+|+++. +.+..++|++
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~-~~ggn----ig~p~~~-~~~~~~~~~V~E~ss~~l----~~~~~~~P~i 177 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRV-AVGGN----IGTPALD-LLSDDPELYVLELSSFQL----ETTHSLNAEV 177 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCe-EEecC----cCHHHHH-HhcCCCCEEEEEcChhhh----CcCcccCccE
Confidence 579999999999999999999998888865 34566 6777632 223467999999987643 3455689999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCC--cceEEEeceEEec
Q 015950 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--CDVRLVAAQVANG 289 (397)
Q Consensus 212 aViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~--~d~~~~~~~i~~~ 289 (397)
+|||||++||+|+|+|+|+|+++|.++++. .+.+|+|.||+....+... ..++++||.+.. .++. +..
T Consensus 178 aVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~-----~~~- 247 (448)
T PRK03803 178 ATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNRDDALTRPLVPD-NQPCLSFGLNAPDFDEWG-----LRE- 247 (448)
T ss_pred EEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhhc-CCcEEEEeCCCCCcCceE-----EEe-
Confidence 999999999999999999999999999974 4789999999988776522 257889986531 1222 211
Q ss_pred CCeEEEEEeecCeEE-EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCC
Q 015950 290 GLGVQVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~-~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyah 368 (397)
.++..|.+.+..... .++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.+|+|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~gv~~idDs~at 327 (448)
T PRK03803 248 GDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGT 327 (448)
T ss_pred cCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCeEEEEcCCcC
Confidence 123334333221111 3678999999999999999999999999999999999999999999998765788999998899
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEE
Q 015950 369 NPISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 369 np~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
||+|+.++++.+++.+++|+++++
T Consensus 328 N~~a~~~al~~l~~~~~~~iilI~ 351 (448)
T PRK03803 328 NVGATVAAIEGLGAHIQGKLVLIA 351 (448)
T ss_pred CHHHHHHHHHhhhhcCCCCEEEEE
Confidence 999999999999765444555553
No 28
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.9e-42 Score=351.09 Aligned_cols=237 Identities=27% Similarity=0.366 Sum_probs=183.9
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhh-hcccCCCcEEEEeecCCCcchHHhhcccc
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL-IGIDRAVDIAVLEMGMSGKGEILELARMA 207 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l-~~~~~~~~~~VlE~~~~~~~~~~~~~~~i 207 (397)
..+.++||||||||||||++||+++|+..|.++. +.|| +|.|+.. .....+.+++|+|+|+++. . ..+.+
T Consensus 119 ~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~-~~Gn----ig~~~~~~~~~~~~~~~~V~E~ss~~l---~-~~~~i 189 (480)
T PRK01438 119 DRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA-AVGN----IGTPVLDAVRDPEGYDVLAVELSSFQL---H-WSPSV 189 (480)
T ss_pred cCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE-EECC----ccHHHHHHHhcCCCCCEEEEEcChHHh---C-cCccc
Confidence 4457899999999999999999999988887764 5676 7888653 4455678999999996543 2 22467
Q ss_pred CCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC----CCCcEEEEeccC--CcceEE
Q 015950 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP----RGVRKVFFGWRR--GCDVRL 281 (397)
Q Consensus 208 ~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~----~~~~vi~~g~~~--~~d~~~ 281 (397)
+|+++|||||+.||+++|||+|+|+++|++||+.. .+.+|+|.||+....+..+ .++++++|+.+. .+++.+
T Consensus 190 ~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~~--~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (480)
T PRK01438 190 SPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEGT--TVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGV 267 (480)
T ss_pred CCCEEEEecCChhhccccCCHHHHHHHHHHHHhCC--CceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceE
Confidence 99999999999999999999999999999999852 4789999999988776521 235788888642 233332
Q ss_pred EeceEEecCCeEEEEEeecC---eEE-EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecC
Q 015950 282 VAAQVANGGLGVQVVLEKER---EMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357 (397)
Q Consensus 282 ~~~~i~~~~~~~~~~~~~~~---~~~-~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~ 357 (397)
.+. +.... .|.....+ ... ..+++++|.||++|+++|++++..+|++.+.|.++|++|++++||||++...+
T Consensus 268 ~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~~~ 343 (480)
T PRK01438 268 VDG-ILVDR---AFVEDRQTSALELATLEDLRPAAPHNIANALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADAD 343 (480)
T ss_pred ECC-EEEEE---eeccccccccceeeeHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEEC
Confidence 210 10000 11111000 000 12478999999999999999999999999999999999999999999997656
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH
Q 015950 358 GIKIVNDAYNANPISTRAAIDLL 380 (397)
Q Consensus 358 ~~~vi~Dsyahnp~s~~~~l~~l 380 (397)
++.+|||||||||+|++++|+.+
T Consensus 344 ~~~iiDDs~ahNp~a~~aaL~~l 366 (480)
T PRK01438 344 GVTWVDDSKATNPHAAAASLAAY 366 (480)
T ss_pred CEEEEecCccCCHHHHHHHHHhC
Confidence 78899999999999999999888
No 29
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-42 Score=350.13 Aligned_cols=243 Identities=27% Similarity=0.354 Sum_probs=189.8
Q ss_pred HHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhc-ccCCCcEEEEeecCCCcch
Q 015950 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG-IDRAVDIAVLEMGMSGKGE 199 (397)
Q Consensus 121 la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~-~~~~~~~~VlE~~~~~~~~ 199 (397)
++.+++. .. .++|+||||||||||++||+++|+..|..+ ...|| +|.|+.... ...+.+++|+|+|+++.+.
T Consensus 99 ~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~-~~~g~----ig~~~~~~~~~~~~~~~~v~E~~~~~~~~ 171 (450)
T PRK14106 99 VELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNAGRKT-LVAGN----IGYPLIDAVEEYGEDDIIVAEVSSFQLET 171 (450)
T ss_pred HHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHcCCCe-EEeCc----ccHHHHHHHhcCCCCCEEEEEcChhhhcc
Confidence 4444443 33 689999999999999999999998777654 45666 788876432 2346899999999765432
Q ss_pred HHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCC--c
Q 015950 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--C 277 (397)
Q Consensus 200 ~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~--~ 277 (397)
...++|+++|||||+.||+++|||+|+|+++|+++|+..++.+.+++|.||+....+.....+++++||.+.. .
T Consensus 172 ----~~~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (450)
T PRK14106 172 ----IKEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKAKARVIFFSRKSLLEE 247 (450)
T ss_pred ----ccccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHhhcCceEEEEecCccCcC
Confidence 2468999999999999999999999999999999999888889999999999887776322367889986531 1
Q ss_pred ceEEEeceEEecCCeEEEEEeecCe-EE-EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEee
Q 015950 278 DVRLVAAQVANGGLGVQVVLEKERE-MV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355 (397)
Q Consensus 278 d~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~ 355 (397)
+++.. .....+...+... .. .+++|++|.||++|+++|++++..+|++++++.++|++|++++||||.+..
T Consensus 248 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~e~i~~ 320 (450)
T PRK14106 248 GVFVK-------NGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAE 320 (450)
T ss_pred ceEEE-------CCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEee
Confidence 11111 1222233322110 00 136899999999999999999999999999999999999999999999875
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHh
Q 015950 356 RSGIKIVNDAYNANPISTRAAIDLLK 381 (397)
Q Consensus 356 ~~~~~vi~Dsyahnp~s~~~~l~~l~ 381 (397)
.++..+|+|+|||||+|+++++++++
T Consensus 321 ~~~~~vi~D~~ahNP~s~~~~l~~l~ 346 (450)
T PRK14106 321 INGVKFINDSKGTNPDAAIKALEAYE 346 (450)
T ss_pred ECCEEEEeCCCccCHHHHHHHHHhCC
Confidence 46788999989999999999999884
No 30
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3e-41 Score=343.02 Aligned_cols=240 Identities=29% Similarity=0.318 Sum_probs=188.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhh-cccCCCcEEEEeecCCCcchHHhhccccCCc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~-~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ 210 (397)
.++|+||||||||||++||+++|+..|..+ ...|| +|.|.+.. ....+.+++|+|+|+.+. .. ...++|+
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~Gn----ig~p~~~~~~~~~~~~~~V~E~ss~~~---~~-~~~~~P~ 178 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHA-LLAGN----IGYPASEVAQKATADDTLVMELSSFQL---MG-IETFRPH 178 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCe-EEEcc----cChhhHHHHhcCCCCCEEEEEcCchhh---Cc-ccccCCC
Confidence 579999999999999999999998888765 46676 67776543 334567999999985443 22 3467999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCc--ceEEEeceEEe
Q 015950 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC--DVRLVAAQVAN 288 (397)
Q Consensus 211 iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~--d~~~~~~~i~~ 288 (397)
++|||||++||+++|||+|+|+++|++|++..++.+.+|+|.||+....+......++++||.+.+. +++..+
T Consensus 179 iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 253 (447)
T PRK02472 179 IAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKD----- 253 (447)
T ss_pred EEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCceEEEeecCCCCcCceEEEC-----
Confidence 9999999999999999999999999999998888899999999998876653222578889865321 122111
Q ss_pred cCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCC
Q 015950 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyah 368 (397)
+ .+.+.+......++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++++|+|+|||
T Consensus 254 ---~-~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~ 329 (447)
T PRK02472 254 ---G-ALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDGRKFYNDSKAT 329 (447)
T ss_pred ---C-EEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECCeEEEECCCCC
Confidence 1 122221101112368999999999999999999999999999999999999999999998754689999998899
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 369 NPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 369 np~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
||+|+.++|+.+ . ++++++++
T Consensus 330 N~~s~~~al~~~---~-~~ii~I~g 350 (447)
T PRK02472 330 NILATQKALSGF---N-QPVVLLAG 350 (447)
T ss_pred CHHHHHHHHHhC---C-CCEEEEEC
Confidence 999999988875 2 45666664
No 31
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.2e-41 Score=341.11 Aligned_cols=238 Identities=31% Similarity=0.402 Sum_probs=188.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhh-hhcccCCCcEEEEeecCCCcchHHhhccccCCc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~-l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ 210 (397)
.++||||||||||||++||+++|+..|.++ ...|| +|.|+. ......+.+++|+|+|+.+.+.+... .++|+
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~~~~~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~ 187 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRT-ALVGN----IGVPLLEVLAPQPAPEYWAIELSSYQTGDVARS--GARPE 187 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcE-EEcCC----CCcchHHHhccCCCCcEEEEEecCCcccccccc--cCCCC
Confidence 479999999999999999999998888765 46677 677763 43444578999999998777555432 37999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecC
Q 015950 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (397)
Q Consensus 211 iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (397)
++|||||++||+|+|+|+|+|.++|++||+...+ +.+|+|.||+....+.. ...++++||.... +....
T Consensus 188 iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~--~~~~~------- 256 (468)
T PRK04690 188 LAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RIALLNAADPRLAALQL-PDSEVVWFNHPDG--WHVRG------- 256 (468)
T ss_pred EEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-CeEEEeCccHHHHHHhc-CCCeEEEeeCCcc--ceecc-------
Confidence 9999999999999999999999999999987543 68899999998776642 2257888886421 11111
Q ss_pred CeEEEEEeecC-eEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 291 LGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
. +.+.+.. ....++++++|.||++|+++|++++..+|++++.+.++|++|+++|||||++...+++.+||||||||
T Consensus 257 -~--~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahN 333 (468)
T PRK04690 257 -D--VVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTT 333 (468)
T ss_pred -e--EEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCC
Confidence 0 1111110 11145778999999999999999999999999999999999998999999998656899999988999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEe
Q 015950 370 PISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 370 p~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
|+|++++|+.+ +++++++++.
T Consensus 334 p~a~~~al~~~---~~~~i~~i~G 354 (468)
T PRK04690 334 PHASLAALDCF---AGRRVALLVG 354 (468)
T ss_pred HHHHHHHHHhc---cCCcEEEEEc
Confidence 99999988765 3457777664
No 32
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.8e-41 Score=343.30 Aligned_cols=242 Identities=24% Similarity=0.280 Sum_probs=185.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcc-----cCCCcEEEEeecCCCcchHHhhcc
Q 015950 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-----DRAVDIAVLEMGMSGKGEILELAR 205 (397)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~-----~~~~~~~VlE~~~~~~~~~~~~~~ 205 (397)
+.++|+||||||||||++||+++|+..|.++. ..|| +|.|++.+.. ..+.+++|+|+|++ . ++.. +
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~-~~gn----iG~~~~~~~~~~~~~~~~~d~~VlE~~s~-~--l~~~-~ 178 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAP-ACGN----IGYAACELALLRSGKAQKPDWIVAELSSY-Q--IESS-P 178 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeE-Eecc----cChhHHHHHhhhhccCCCCCEEEEEcccc-c--cccC-c
Confidence 46899999999999999999999998887753 3455 6888765433 56789999999963 2 2332 2
Q ss_pred ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccC-CcceEEEec
Q 015950 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR-GCDVRLVAA 284 (397)
Q Consensus 206 ~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~-~~d~~~~~~ 284 (397)
.++|+++|||||++||+++|||+|+|+++|++|++. .+.+|+|.||+....+.... .+.++|+.+. ..++...+
T Consensus 179 ~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 253 (459)
T PRK02705 179 ELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNGDDPYLRQHRSSW-PKGYWTSTQGKASLLGQAD- 253 (459)
T ss_pred ccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEECCCHHHHHHHhcC-CceEEeccCCccccccccc-
Confidence 479999999999999999999999999999999964 58999999999887775221 2456776532 12222111
Q ss_pred eEEecCCeEEEEEeecCeEEE-EEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEE
Q 015950 285 QVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVN 363 (397)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~-~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~ 363 (397)
......+..+.. +. ..+. .+++++|.||++|+++|++++..+|++++.+.++|++|++++||||++...+++.||+
T Consensus 254 -~~~~~~~~~~~~-~~-~~~~~~~l~l~G~hn~~NalaAia~a~~lgv~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ii~ 330 (459)
T PRK02705 254 -GWILEEGWVVER-GE-PLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEALRSFPGVPHRLERIGTINGIDFIN 330 (459)
T ss_pred -eeEecCCEEEEC-Cc-ceeeHHHcCCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEeeCCcEEEE
Confidence 111112222211 11 1112 3578999999999999999999999999999999999999999999987656889999
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCeEEEEE
Q 015950 364 DAYNANPISTRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 364 Dsyahnp~s~~~~l~~l~~~~~~rv~~v~ 392 (397)
|+|||||+|++++++.++ ++++++++
T Consensus 331 Ds~a~N~~s~~~al~~l~---~~~i~IlG 356 (459)
T PRK02705 331 DSKATNYDAAEVGLKAVP---GPVILIAG 356 (459)
T ss_pred eCCCCCHHHHHHHHHhCC---CCeEEEec
Confidence 999999999999998884 34555554
No 33
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=1.3e-41 Score=340.43 Aligned_cols=255 Identities=24% Similarity=0.267 Sum_probs=192.4
Q ss_pred HHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcCCC--CcCcc---ch------------------
Q 015950 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGN--WNNRV---GV------------------ 174 (397)
Q Consensus 120 ~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~g~--~n~~~---g~------------------ 174 (397)
++...+++|+.++++|+||||||||||+.||+++|++.|++|+ +|++- ++.++ |.
T Consensus 6 ~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~ 85 (397)
T TIGR01499 6 KLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPIL 85 (397)
T ss_pred HHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHH
Confidence 3444445667778999999999999999999999999999994 44432 33333 11
Q ss_pred -----hhhhh----------cccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHHHHh
Q 015950 175 -----ALSLI----------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEI 238 (397)
Q Consensus 175 -----p~~l~----------~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g-s~e~~~~~K~~i 238 (397)
+.+.+ ..+.++|++|||+|+++.. +.+++++|+++|||||+.||+++|| |+|+|+++|++|
T Consensus 86 ~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrl---d~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I 162 (397)
T TIGR01499 86 EKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRL---DATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGI 162 (397)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCc---ccccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCc
Confidence 11111 1268999999999986553 3567889999999999999999999 899999999999
Q ss_pred cccCCCCcEEEEcCCCHhHHhhc----CCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeec-CeEEEEEeCCChH
Q 015950 239 FQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGL 313 (397)
Q Consensus 239 ~~~~~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~ 313 (397)
|+ +++.+|+|.||+....+. ...+.++++++. ++.... . .+..|.+... +....++++++|.
T Consensus 163 ~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~G~ 229 (397)
T TIGR01499 163 IK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGR----DFNYSE--T----DENYLSFSGANLFLEPLALSLLGD 229 (397)
T ss_pred cC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEecc----ceeecc--c----ccceEEeecccccccccCCCCCCH
Confidence 96 457899999998876543 111245667763 232222 1 1233444432 1112467899999
Q ss_pred HHHHHHHHHHHHHHHcCC-----CHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccC-CCe
Q 015950 314 HLAINACAAAAVATLFGV-----SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNV 387 (397)
Q Consensus 314 ~n~~N~laAia~a~~lgi-----~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~-~~r 387 (397)
||++|+++|++++..+|. +.+.+.++|+++. +|||||++.. +++.+|+| +||||+|+++++++++... +++
T Consensus 230 ~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~~-~~~~viiD-~AHNp~a~~~~l~~l~~~~~~~~ 306 (397)
T TIGR01499 230 HQAENAALALAALEVLGKQRPKLSEEAIRKGLANTI-WPGRLEILSE-DNPNILLD-GAHNPHSAEALAEWFKKRFNGRP 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhCC-CCceEEEEec-CCCEEEEE-CCCCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999986 5899999999997 6999999975 46789999 8999999999999998753 457
Q ss_pred EEEEEe
Q 015950 388 VQCKWR 393 (397)
Q Consensus 388 v~~v~~ 393 (397)
+++||.
T Consensus 307 i~~V~G 312 (397)
T TIGR01499 307 IILLFG 312 (397)
T ss_pred eEEEEE
Confidence 877764
No 34
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.3e-40 Score=359.74 Aligned_cols=242 Identities=21% Similarity=0.311 Sum_probs=195.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhCCCCe-EEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 133 VLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 133 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
++||||||||||||+.||+++|+++|.++ ... |+.+ |.|. .....+.+++|+|+|+++ +.+. .++|++
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG~~---g~~~--~~~~~~~d~~V~E~ss~~-~~~~----~~~P~i 173 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GGLN---QEGL--NGYSGSSEYFVAEADESD-GSLK----HYTPEF 173 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CCcc---cccc--ccccCCCCEEEEECCCCc-chhh----eeecCE
Confidence 69999999999999999999999888753 333 4322 2232 233345799999999774 4433 579999
Q ss_pred EEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecC
Q 015950 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (397)
Q Consensus 212 aViTNi~~dHld~~-gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (397)
+|||||++||||+| +|+|+|+++|..+++.+++.+.+|+|.||+...... +..+||....+++++.+ +....
T Consensus 174 aViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~--~~~~~ 246 (809)
T PRK14573 174 SVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILS--YYQEG 246 (809)
T ss_pred EEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEE--EEecC
Confidence 99999999999988 899999999999998877889999999999765432 23577765545666555 54444
Q ss_pred CeEEEEEeecC-eEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 291 LGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
.+..|.+...+ ....++++++|.||++|+++|++++..+|++.+.+.++|++|++++||||++...+++.+|+| ||||
T Consensus 247 ~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~i~D-~ahn 325 (809)
T PRK14573 247 WRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRRLERKNSSETFLFLED-YAHH 325 (809)
T ss_pred CeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEeccCCcEEEEE-CCCC
Confidence 44557664322 223678899999999999999999999999999999999999999999999976567899999 9999
Q ss_pred HHHHHHHHHHHhcc-CCCeEEEEEe
Q 015950 370 PISTRAAIDLLKDI-ACNVVQCKWR 393 (397)
Q Consensus 370 p~s~~~~l~~l~~~-~~~rv~~v~~ 393 (397)
|+|++++++++++. +.+|+++||+
T Consensus 326 P~~~~a~l~~l~~~~~~~rli~vf~ 350 (809)
T PRK14573 326 PSEISCTLRAVRDAVGLRRIIAICQ 350 (809)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 99999999999984 5689999996
No 35
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.9e-40 Score=332.79 Aligned_cols=249 Identities=21% Similarity=0.272 Sum_probs=190.9
Q ss_pred CCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCC
Q 015950 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (397)
Q Consensus 61 g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGT 140 (397)
-++||+.+|.+ ++|.|+.+|.+ +|+. +|. |+..++..+. ++ +.++||||||
T Consensus 60 ~dlvV~s~gi~-~~~~~l~~A~~-~g~~----------------vv~-----~~~~~~~~~~-~~-----~~~~I~ITGT 110 (418)
T PRK00683 60 VDLVVRSPGIK-KEHPWVQAAIA-SHIP----------------VVT-----DIQLAFQTPE-FT-----RYPSLGITGS 110 (418)
T ss_pred CCEEEECCCCC-CCcHHHHHHHH-CCCc----------------EEE-----HHHHHHhhhh-cC-----CCCEEEEECC
Confidence 68999999999 88999999999 8852 366 7766655442 22 2468999999
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChh
Q 015950 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220 (397)
Q Consensus 141 nGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~d 220 (397)
||||||++||+++|+..|. +..+.|| +|.|+ +....+.+++|+|+|+++.++... ....|+++|||||++|
T Consensus 111 ~GKTTTt~ml~~iL~~~g~-~~~~~Gn----iG~p~--l~~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~d 181 (418)
T PRK00683 111 TGKTTTILFLEHLLKRLGI-PAFAMGN----IGIPI--LDGMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDN 181 (418)
T ss_pred CChHHHHHHHHHHHHHcCC-CeEEECC----cCHHH--HHHhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChh
Confidence 9999999999999988876 4467888 88886 344456899999999876644333 2345699999999999
Q ss_pred hhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceE--EEeceEEecCCeEEEEEe
Q 015950 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGLGVQVVLE 298 (397)
Q Consensus 221 Hld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~--~~~~~i~~~~~~~~~~~~ 298 (397)
|+|+|+|+|+|+++|.+||..+. |.|+.+.. ...+||.+ +. ... + +.+.
T Consensus 182 Hld~~~s~e~y~~aK~~i~~~~~-------~~~~~~~~--------~~~~~~~~----~~~~~~~--~--------~~~~ 232 (418)
T PRK00683 182 HLDYHGNLSAYFQAKQNIAKCLR-------NPDDLWVG--------DERSYGHS----YLEYVQE--I--------MRLL 232 (418)
T ss_pred HhccCCCHHHHHHHHHHHHHhhh-------Cccccccc--------ccCCcCce----eecCcch--h--------hhhh
Confidence 99999999999999999997543 22322111 11234321 11 001 1 0000
Q ss_pred ecCeEEEEEeCCChHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHH
Q 015950 299 KEREMVKFVIPSPGLHLAINACAAAAVATL-FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377 (397)
Q Consensus 299 ~~~~~~~~~l~l~G~~n~~N~laAia~a~~-lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l 377 (397)
.. ...++++|.||++|+++|++++.. +|++.+++.++|++|++++||||++...++..+|+|+||+||+|+++++
T Consensus 233 ~~----~~~~~~~g~hn~~Na~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al 308 (418)
T PRK00683 233 DK----GSALKPLYLHDRYNYCAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKAL 308 (418)
T ss_pred cc----ccccCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHH
Confidence 01 124578899999999999999999 6999999999999999999999999766789999999999999999999
Q ss_pred HHH
Q 015950 378 DLL 380 (397)
Q Consensus 378 ~~l 380 (397)
+.+
T Consensus 309 ~~~ 311 (418)
T PRK00683 309 LAV 311 (418)
T ss_pred HhC
Confidence 865
No 36
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=4.8e-40 Score=355.41 Aligned_cols=274 Identities=25% Similarity=0.271 Sum_probs=202.5
Q ss_pred HHHHHHHHHH-Hh-hcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcCCCCcCccch-------hhhh--hc
Q 015950 114 TLNSLVNMAC-YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGV-------ALSL--IG 180 (397)
Q Consensus 114 ~~~aL~~la~-~~-~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~g~~n~~~g~-------p~~l--~~ 180 (397)
.+.++..+.. +| ..|..++|+|+||||||||||++||+++|+..|++++ .|.|.+++...+ |.+. +.
T Consensus 459 ~r~v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l 538 (864)
T TIGR02068 459 PRNVARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRIL 538 (864)
T ss_pred CeeHHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHh
Confidence 4666677776 55 5567889999999999999999999999999999885 345554433211 3222 23
Q ss_pred ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhcc--CCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHH
Q 015950 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (397)
Q Consensus 181 ~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~--~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~ 258 (397)
.+.++|++|+|+|+++ .++....+.+|+++|||||+.||+++ |+|+|+|+++|+.+++.+++++.+|+|.|||.+.
T Consensus 539 ~~~~vd~aVlE~~~gg--il~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~ 616 (864)
T TIGR02068 539 MDPTVDAAVLETARGG--ILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVA 616 (864)
T ss_pred hCCCCCEEEEEccCCc--hhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 5678999999998543 23333345689999999999999986 4699999999999999888899999999999988
Q ss_pred hhcCCCCCcEEEEeccCCcceEEEe----c-eEEecCCeEEEEEeecCe-----EEEEEeCCCh--HHHHHHHHHHHHHH
Q 015950 259 NLTVPRGVRKVFFGWRRGCDVRLVA----A-QVANGGLGVQVVLEKERE-----MVKFVIPSPG--LHLAINACAAAAVA 326 (397)
Q Consensus 259 ~~~~~~~~~vi~~g~~~~~d~~~~~----~-~i~~~~~~~~~~~~~~~~-----~~~~~l~l~G--~~n~~N~laAia~a 326 (397)
.+.....+++++||.+.+.++.... + .+.+ .++..+...+... ...+.+++.| .||++|+++|++++
T Consensus 617 ~~a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa 695 (864)
T TIGR02068 617 AMAEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYY-ENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAA 695 (864)
T ss_pred HHHHhCCCCEEEEecCCCChHHHHHHHcCCcEEEE-cCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHHHHH
Confidence 7763223678999875433321111 0 0111 1122222222100 1133444445 89999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCC----CCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCe-EEEEE
Q 015950 327 TLFGVSLAQVGISLSNFSP----VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNV-VQCKW 392 (397)
Q Consensus 327 ~~lgi~~~~i~~~L~~~~~----~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r-v~~v~ 392 (397)
+.+|++++.|.++|++|.+ +|||||++.. +++.+|+| |||||+|++++++++++++.+| +++++
T Consensus 696 ~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~-~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig 764 (864)
T TIGR02068 696 WALGVPIELIRAGIRTFDADAAQAPGRFNLFNL-GGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIG 764 (864)
T ss_pred HHcCCCHHHHHHHHHhccccccCCCCceEEEEe-CCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 9999999999999999986 8999999865 67899999 9999999999999999986444 44443
No 37
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=3.4e-38 Score=323.17 Aligned_cols=269 Identities=24% Similarity=0.267 Sum_probs=190.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCC----CCcCcc-----ch---------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV-----GV--------- 174 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g----~~n~~~-----g~--------- 174 (397)
.+++.|..| ++|..++++|+|||||||+||+.||+++|+++|++|+.... .+|.++ |.
T Consensus 60 r~~~ll~~L----G~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~ 135 (510)
T PLN02913 60 RMRRLMDRL----GNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLND 135 (510)
T ss_pred HHHHHHHHc----CCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHH
Confidence 344444444 45666789999999999999999999999999999964321 122221 11
Q ss_pred ------------------hhhhhc----------ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC
Q 015950 175 ------------------ALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226 (397)
Q Consensus 175 ------------------p~~l~~----------~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g 226 (397)
+++.++ .+.++|++|+|+|+++.++...+....+|+++|||||+.||++++|
T Consensus 136 ~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG 215 (510)
T PLN02913 136 LFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALG 215 (510)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhc
Confidence 122111 2589999999999998865544433234599999999999999998
Q ss_pred -CHHHHHHHHHHhcccCCCCcEEEEcC-CCHhHHhhc----CCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEee-
Q 015950 227 -SLEDVARAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK- 299 (397)
Q Consensus 227 -s~e~~~~~K~~i~~~~~~~~~~vln~-Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~- 299 (397)
|+|+|+++|+.|++ ++..+|++. ..+....+. .+.+++++.++. .+.++.... +.. ..+..|.+..
T Consensus 216 ~Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~-~~~~~~~~~--~~~-~~~~~~~~~~~ 288 (510)
T PLN02913 216 GSLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASD-PGVRSSIKG--IIT-DNGKPCQSCDI 288 (510)
T ss_pred ccHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEecc-ccccceeec--ccc-cCCceeEEecc
Confidence 79999999999996 577888885 334433332 122366776642 112222211 111 1122233211
Q ss_pred ----cC------eEEEEEeCCChHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhcCCCCCCCeeeEEeec-------C
Q 015950 300 ----ER------EMVKFVIPSPGLHLAINACAAAAVATLF-----GVSLAQVGISLSNFSPVQMRSELLVSR-------S 357 (397)
Q Consensus 300 ----~~------~~~~~~l~l~G~~n~~N~laAia~a~~l-----gi~~~~i~~~L~~~~~~~GR~e~i~~~-------~ 357 (397)
.+ ....+.++++|.||++|+++|++++..+ +++.+.|.++|+++.+ |||||++... .
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~ 367 (510)
T PLN02913 289 VIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLP 367 (510)
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCC
Confidence 00 1114778999999999999999999988 6999999999999997 6999998631 2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhc-cCCCeEEEEEee
Q 015950 358 GIKIVNDAYNANPISTRAAIDLLKD-IACNVVQCKWRK 394 (397)
Q Consensus 358 ~~~vi~Dsyahnp~s~~~~l~~l~~-~~~~rv~~v~~~ 394 (397)
++.||+| +||||+|+++++++|++ ++.+|+++||..
T Consensus 368 ~~~vIlD-gAHNp~s~~al~~~L~~~~~~~ki~~V~gm 404 (510)
T PLN02913 368 GATVLLD-GAHTKESAKALVDTIKTAFPEARLALVVAM 404 (510)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCEEEEEEc
Confidence 5689999 78999999999999987 666788888853
No 38
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=1.4e-37 Score=312.90 Aligned_cols=254 Identities=20% Similarity=0.240 Sum_probs=178.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCC----CCcCcc---c--h--------------
Q 015950 118 LVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV---G--V-------------- 174 (397)
Q Consensus 118 L~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g----~~n~~~---g--~-------------- 174 (397)
+.++....++|....++|+||||||||||+.||+++|+++|++|+.... .++.++ | +
T Consensus 35 ~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~ 114 (416)
T PRK10846 35 VSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEA 114 (416)
T ss_pred HHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHH
Confidence 3344444456677789999999999999999999999999999853221 111111 0 0
Q ss_pred -----hhhhh----------cccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHHHHh
Q 015950 175 -----ALSLI----------GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEI 238 (397)
Q Consensus 175 -----p~~l~----------~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g-s~e~~~~~K~~i 238 (397)
+++.+ ..+.++|++|||+|+++. ++ .++.++|+++|||||+.||+++|| |+|+|+++|++|
T Consensus 115 ~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggr--ld-~tn~i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~I 191 (416)
T PRK10846 115 ARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR--LD-ATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGI 191 (416)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCC--ch-hhhccCCCEEEECCccHHHHHHhcCCHHHHHHHHHhh
Confidence 11111 126889999999997543 33 356789999999999999999999 699999999999
Q ss_pred cccCCCCcEEEEcCCC-Hh-HHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHH
Q 015950 239 FQESKLGDVCVLNADD-PL-VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLA 316 (397)
Q Consensus 239 ~~~~~~~~~~vln~Dd-~~-~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~ 316 (397)
++. ++.+|+|.|| +. ...+..+.+++++.++. ++... ....+ +.+...... ...++++ .||+
T Consensus 192 ik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~----~~~~~-----~~~~~--~~~~~~~~~-~~~~~l~-~~~~ 255 (416)
T PRK10846 192 FRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGV----DWNYS-----VTDHD--WAFSDGDGT-LENLPLP-NVPL 255 (416)
T ss_pred hcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecc----eeeee-----ccCce--EEEecCccc-cccCCcc-chHH
Confidence 963 6678998876 43 22333222245554432 11110 00111 222111010 1235555 4799
Q ss_pred HHHHHHHHHHHH--cCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccC-CCeEEEEEe
Q 015950 317 INACAAAAVATL--FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNVVQCKWR 393 (397)
Q Consensus 317 ~N~laAia~a~~--lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~-~~rv~~v~~ 393 (397)
+|+++|++++.. ++++.+.|.++|+++. +|||||++.. ...+|+| |||||+|++++++.++++. ++|+++||.
T Consensus 256 ~N~~~Aia~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~--~~~iI~D-~AHNp~a~~~l~~~L~~~~~~~~ii~Vfg 331 (416)
T PRK10846 256 PNAATALAALRASGLEVSEQAIRDGIASAI-LPGRFQIVSE--SPRVILD-VAHNPHAAEYLTGRLKALPKNGRVLAVIG 331 (416)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEcC--CCcEEEE-CCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999865 5699999999999998 6999999874 4468999 8999999999999998765 468888886
Q ss_pred e
Q 015950 394 K 394 (397)
Q Consensus 394 ~ 394 (397)
.
T Consensus 332 ~ 332 (416)
T PRK10846 332 M 332 (416)
T ss_pred e
Confidence 4
No 39
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.7e-37 Score=304.91 Aligned_cols=217 Identities=24% Similarity=0.275 Sum_probs=168.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
.++||||||||||||++||+++|+..|..+ .|| +|.|++. +..+.+++|+|+|+.+ .++++.++|++
T Consensus 89 ~~~i~ITGT~GKTTTt~ml~~iL~~~g~~~---~gn----iG~p~~~--~~~~~~~~V~E~ss~~----~~~~~~~~p~i 155 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMTTHLLEDFGAVS---GGN----IGTPLAE--LDKNAKIWVLETSSFT----LHYTNKAKPNI 155 (401)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHCCCcE---EEE----ecHhHHh--cCCCCCEEEEECChHH----hhCCccCCCcE
Confidence 359999999999999999999998877433 344 6888775 4667799999997432 34556789999
Q ss_pred EEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCC
Q 015950 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (397)
Q Consensus 212 aViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~ 291 (397)
+|||||++||+|+|+|+|+|.++|.+||+.+++++.+|+|.||+... .. .++++||... +++. . .
T Consensus 156 avitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~dd~~~~---~~--~~~~~fg~~~--~~~~-~--~----- 220 (401)
T PRK03815 156 YLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPKKFKNTP---TK--AQKIFYEDEE--DLAE-K--F----- 220 (401)
T ss_pred EEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEeccccccc---cC--CcEEEEecCC--cccc-c--e-----
Confidence 99999999999999999999999999999998899999999998632 11 5678888421 2210 1 1
Q ss_pred eEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHH
Q 015950 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371 (397)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~ 371 (397)
.+... .+.+.+. |++|+++|++++..+|+ +.+.++|++|+++++|||++...+++++||||||.||+
T Consensus 221 ----~~~~~------~~~~~~~-~~~NalaA~a~a~~~G~--~~~~~~L~~f~~~~~R~e~~~~~~gv~~idDs~~tn~~ 287 (401)
T PRK03815 221 ----GIDSE------KINFKGP-FLLDALLALAVYKILFD--ELDYERLNAFKIGKHKLEEFRDKQGRLWVDDSKATNVD 287 (401)
T ss_pred ----eEehH------hcCCchH-HHHHHHHHHHHHHHhCc--HHHHHHHHhCCCCCceEEEEEEECCEEEEECCCCCCHH
Confidence 11111 1123344 49999999999999994 55667899999999999999766889999999999999
Q ss_pred HHHHHHHHHhccCCCeEEEEE
Q 015950 372 STRAAIDLLKDIACNVVQCKW 392 (397)
Q Consensus 372 s~~~~l~~l~~~~~~rv~~v~ 392 (397)
|+.++|+.+ +++|+++++
T Consensus 288 a~~~al~~~---~~~~ii~Il 305 (401)
T PRK03815 288 ATLQALKRY---KDKKIHLIL 305 (401)
T ss_pred HHHHHHHhC---CCCCEEEEE
Confidence 888887755 444644443
No 40
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=2.9e-36 Score=271.35 Aligned_cols=186 Identities=37% Similarity=0.559 Sum_probs=157.3
Q ss_pred EcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhccc-CCCcEEEEeecCCCcchHHhhccccCCcEEEEc
Q 015950 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215 (397)
Q Consensus 137 VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~-~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViT 215 (397)
||||||||||++||+++|+..|..+ .+.|++++.++.+..+..+. .+++++|+|+|+++.++ +++..+++|+++|||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viT 78 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVV-GTIGNTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVIT 78 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEE-EEESSCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcc-cccccccchHHHHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeec
Confidence 8999999999999999998887754 57888888889888777654 59999999999987776 777766899999999
Q ss_pred CCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEE
Q 015950 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (397)
Q Consensus 216 Ni~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~ 295 (397)
||++||+++|+++|+|+++|.++++.+++++.+|+|.|||...........++++||.+.+.+++..+ +....++..|
T Consensus 79 ni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--i~~~~~~~~~ 156 (188)
T PF08245_consen 79 NIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASN--ISYSEEGGRF 156 (188)
T ss_dssp ---SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEE--EEEETTEEEE
T ss_pred eecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeee--EEEecCCcEE
Confidence 99999999999999999999999999988999999999997766652223679999999888888888 8888888888
Q ss_pred EEe-ecCeEEEEEeCCChHHHHHHHHHHHHHH
Q 015950 296 VLE-KEREMVKFVIPSPGLHLAINACAAAAVA 326 (397)
Q Consensus 296 ~~~-~~~~~~~~~l~l~G~~n~~N~laAia~a 326 (397)
.+. .++...++++|++|.||++|+++|+++|
T Consensus 157 ~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 157 RIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 665 3334458999999999999999999986
No 41
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9e-35 Score=287.68 Aligned_cols=259 Identities=25% Similarity=0.339 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcC----CCCcCccc-----------------
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY----GNWNNRVG----------------- 173 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~----g~~n~~~g----------------- 173 (397)
.+-+..+....++|+...++|+|+|||||+||+.|+.+||+++|++|+... -++|.++-
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 344455666677888889999999999999999999999999999986332 23444431
Q ss_pred ----------hhhhhhc----------ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCC-HHHHH
Q 015950 174 ----------VALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVA 232 (397)
Q Consensus 174 ----------~p~~l~~----------~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs-~e~~~ 232 (397)
...+.++ .+.++|++|+|||+++. .+.++++.|+++|||+|+.||.+++|+ +|+|+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGR---lDATNVi~p~vsvIT~I~lDH~~~LG~tie~IA 183 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGR---LDATNVIEPDVSVITSIGLDHTAFLGDTLESIA 183 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEecccccc---ccchhccCCceEEEcccChhHHHHhCCcHHHHH
Confidence 1111221 25789999999998876 567789999999999999999999986 99999
Q ss_pred HHHHHhcccCCCCcEEEEcC-CCHhHHhhc----CCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEE
Q 015950 233 RAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307 (397)
Q Consensus 233 ~~K~~i~~~~~~~~~~vln~-Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 307 (397)
++|+.||+ ++..+|+.. +.|...... ....+++..++. ++...+ .+..|.+.+.+....+.
T Consensus 184 ~EKAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~ 249 (427)
T COG0285 184 REKAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGP----DFQVLE-------EGNGFSFQGGGGLLDLP 249 (427)
T ss_pred HHhhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeeccc----chhhcc-------ccceEEEecCCeeeeec
Confidence 99999995 455677776 456554443 112244444432 222222 13445555332334789
Q ss_pred eCCChHH-HHHHHHHHHHHHHHcCC--CHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccC
Q 015950 308 IPSPGLH-LAINACAAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (397)
Q Consensus 308 l~l~G~~-n~~N~laAia~a~~lgi--~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~ 384 (397)
+|++|.| |+.|+++|++++..++. +.+.|.++|++..| |||||++.. ++.|+.| .||||.|++++.+++++..
T Consensus 250 lp~l~~~~Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~~--~p~i~lD-gAHNp~aa~~La~~l~~~~ 325 (427)
T COG0285 250 LPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDW-PGRLERLSE--NPLILLD-GAHNPHAARALAETLKTLF 325 (427)
T ss_pred cccccchhHHHHHHHHHHHHHHhcccCCHHHHHHHHHhCcC-CceEEEecC--CCeEEEE-CCCCHHHHHHHHHHHHHHh
Confidence 9998888 99999999999999984 89999999999998 999999985 4789999 9999999999999999875
Q ss_pred C-Ce-EEEEEee
Q 015950 385 C-NV-VQCKWRK 394 (397)
Q Consensus 385 ~-~r-v~~v~~~ 394 (397)
. ++ +++||..
T Consensus 326 ~~~~~~~~v~g~ 337 (427)
T COG0285 326 NDRPRLTLVFGM 337 (427)
T ss_pred ccCCceEEEEEe
Confidence 3 33 6777654
No 42
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=1.1e-32 Score=279.26 Aligned_cols=236 Identities=22% Similarity=0.241 Sum_probs=173.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE--cCC--CCcCcc----------------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--SYG--NWNNRV---------------- 172 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~--t~g--~~n~~~---------------- 172 (397)
.+++.|..|+.. .|..++++|+|||||||+||+.|+++||++.|++|+. ++. .++.++
T Consensus 44 rm~~~L~~LG~p--~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f 121 (530)
T PLN02881 44 LLFDYLKILELE--EAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYF 121 (530)
T ss_pred HHHHHHHHcCCC--chhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHH
Confidence 667777766632 2336789999999999999999999999999999852 221 112211
Q ss_pred ---------------chh-----hhhhcc----cCCCcEEEEeecCCCcchHHhhcccc-CCcEEEEcCCChhhhccCC-
Q 015950 173 ---------------GVA-----LSLIGI----DRAVDIAVLEMGMSGKGEILELARMA-RPEIRVVLNVGDSHLESLG- 226 (397)
Q Consensus 173 ---------------g~p-----~~l~~~----~~~~~~~VlE~~~~~~~~~~~~~~~i-~p~iaViTNi~~dHld~~g- 226 (397)
+.| ++++.+ +.++|++|+|+|+++..+ .++++ +|+++|||||+.||+++||
T Consensus 122 ~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~D---aTnvi~~p~v~vITnIg~DH~~~LG~ 198 (530)
T PLN02881 122 WWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLD---ATNVVQKPVVCGITSLGYDHMEILGD 198 (530)
T ss_pred HHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCch---hhhccCCCCEEEEccccHHHHHhhcC
Confidence 113 233222 789999999999876643 34444 8999999999999999999
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhc----CCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCe
Q 015950 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (397)
Q Consensus 227 s~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~ 302 (397)
|+|+|+++|++||+ ++..+|+..+++....++ .+.++++..++. . .. +.+ .
T Consensus 199 Tle~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~------------~----~~--~~~--~-- 253 (530)
T PLN02881 199 TLGKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEP------------L----DS--YGL--S-- 253 (530)
T ss_pred CHHHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecc------------c----cc--cee--c--
Confidence 79999999999995 466677776666655544 111233332221 0 00 111 1
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhcCCCCCCCeeeEEee-------cCCeE
Q 015950 303 MVKFVIPSPGLHLAINACAAAAVATLF---------------GVSLAQVGISLSNFSPVQMRSELLVS-------RSGIK 360 (397)
Q Consensus 303 ~~~~~l~l~G~~n~~N~laAia~a~~l---------------gi~~~~i~~~L~~~~~~~GR~e~i~~-------~~~~~ 360 (397)
.+.+++.|.||.+|+++|++++..+ ...++.+.++|++..+ |||||++.. .+++.
T Consensus 254 --~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~ 330 (530)
T PLN02881 254 --GLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLV 330 (530)
T ss_pred --ccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCe
Confidence 3568899999999999999998765 2345689999999997 999999864 14568
Q ss_pred EEEecCCCCHHHHHHHHHHHhc
Q 015950 361 IVNDAYNANPISTRAAIDLLKD 382 (397)
Q Consensus 361 vi~Dsyahnp~s~~~~l~~l~~ 382 (397)
|+.| .||||+|++++.++++.
T Consensus 331 ~~LD-GAHNp~s~~~l~~wf~~ 351 (530)
T PLN02881 331 FYLD-GAHSPESMEACARWFSS 351 (530)
T ss_pred EEEE-CCCCHHHHHHHHHHHHH
Confidence 9999 99999999999999965
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=100.00 E-value=3.2e-32 Score=289.60 Aligned_cols=220 Identities=30% Similarity=0.321 Sum_probs=161.2
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCe--EEcCCCCcCccc-------hhhh--hhcccCCCcEEEEeecCCCc
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNNRVG-------VALS--LIGIDRAVDIAVLEMGMSGK 197 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v--~~t~g~~n~~~g-------~p~~--l~~~~~~~~~~VlE~~~~~~ 197 (397)
..+.|+|+||||||||||++||+++|+..|+++ .+|.|.+++... .|.+ ++..+.+++++|+|+|..+
T Consensus 477 ~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~- 555 (727)
T PRK14016 477 DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETARGG- 555 (727)
T ss_pred CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcCCCc-
Confidence 456799999999999999999999999899887 356676644322 2333 2335678899999998432
Q ss_pred chHHhhccccCCcEEEEcCCChhhhccCC--CHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccC
Q 015950 198 GEILELARMARPEIRVVLNVGDSHLESLG--SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (397)
Q Consensus 198 ~~~~~~~~~i~p~iaViTNi~~dHld~~g--s~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~ 275 (397)
.+.......+|+++|||||+.|||++|+ |+|+|+++|+.+++.++++|.+|+|.||+.+..+......++++|+.++
T Consensus 556 -il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~ 634 (727)
T PRK14016 556 -ILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDP 634 (727)
T ss_pred -hhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCC
Confidence 3333445679999999999999999774 9999999999999998889999999999998887732236789999765
Q ss_pred CcceEEEe----c-eEEecCCeEEEEEeecC-eE-----EEEEeCCCh--HHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 015950 276 GCDVRLVA----A-QVANGGLGVQVVLEKER-EM-----VKFVIPSPG--LHLAINACAAAAVATLFGVSLAQVGISLSN 342 (397)
Q Consensus 276 ~~d~~~~~----~-~i~~~~~~~~~~~~~~~-~~-----~~~~l~l~G--~~n~~N~laAia~a~~lgi~~~~i~~~L~~ 342 (397)
+.++.... + .+.... + .+.+..+. +. ..+.+.++| .||++|+++|+|+|+.+|++++.|.++|++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~-~-~i~~~~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~lGi~~~~I~~~L~s 712 (727)
T PRK14016 635 DNPVIAEHRAQGGRAVYVEG-D-YIVLAEGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGIDIELIRAGLRT 712 (727)
T ss_pred CChHHHHHHHhCCceEEEeC-C-EEEEEeCCcceeeccccccceecCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 43332111 0 011111 1 11111110 00 023333355 799999999999999999999999999999
Q ss_pred CCC----CCCeeeE
Q 015950 343 FSP----VQMRSEL 352 (397)
Q Consensus 343 ~~~----~~GR~e~ 352 (397)
|++ +||||+.
T Consensus 713 F~~~~~~~pGR~n~ 726 (727)
T PRK14016 713 FVSDAAQAPGRFNL 726 (727)
T ss_pred cCCCccCCCccccc
Confidence 996 9999985
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=212.62 Aligned_cols=237 Identities=21% Similarity=0.248 Sum_probs=167.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCC----CcCcc---chh----------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGN----WNNRV---GVA---------- 175 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~----~n~~~---g~p---------- 175 (397)
.+++.|..++.. .+ ..++.+|+|+||+||.||+.++..||++.|++++.-... ...+| |.|
T Consensus 55 ~m~~~L~~lg~p-~d-~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f 132 (496)
T KOG2525|consen 55 RMRKLLERLGNP-ED-QNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYF 132 (496)
T ss_pred HHHHHHHHhCCh-hh-hhheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHH
Confidence 555555555544 22 677999999999999999999999999999997421110 11111 111
Q ss_pred -----------------------hhhhc----ccCCCcEEEEeecCCCcchHHhhccc-cCCcEEEEcCCChhhhccCCC
Q 015950 176 -----------------------LSLIG----IDRAVDIAVLEMGMSGKGEILELARM-ARPEIRVVLNVGDSHLESLGS 227 (397)
Q Consensus 176 -----------------------~~l~~----~~~~~~~~VlE~~~~~~~~~~~~~~~-i~p~iaViTNi~~dHld~~gs 227 (397)
+++.. ..+++|++|+|+|+++. .+.+++ -+|-+..||+|+.||++++|+
T Consensus 133 ~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~---~DaTNvI~kpvvcgITslG~DH~~~LG~ 209 (496)
T KOG2525|consen 133 WEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGE---LDATNVIEKPVVCGITSLGLDHTSFLGN 209 (496)
T ss_pred HHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEEeccccc---cccccccccceEEEEeecCCchHHHHhh
Confidence 11111 26899999999998766 345554 489999999999999999986
Q ss_pred -HHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhc-CCCC-CcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEE
Q 015950 228 -LEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMV 304 (397)
Q Consensus 228 -~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~-~~~~-~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~ 304 (397)
+++|+++|+.||+ .+-.++.-...+.....+ .+.. ..+ .....+ ......+ .
T Consensus 210 tL~eIA~eKAGIfK---~gvpaft~~q~~e~~nvL~~ra~e~~~---------~L~~v~-------p~~~~~l------s 264 (496)
T KOG2525|consen 210 TLSEIAWEKAGIFK---EGVPAFTVPQPPEALNVLKERASELGV---------PLFVVP-------PLEAYEL------S 264 (496)
T ss_pred HHHHHHHHhccccc---cCCceEEcCCcHHHHHHHHHHHHhcCC---------CceecC-------Cchhhhh------c
Confidence 9999999999995 345566665777766665 2110 111 111111 0000000 0
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHHc----C---------------CCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEec
Q 015950 305 KFVIPSPGLHLAINACAAAAVATLF----G---------------VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (397)
Q Consensus 305 ~~~l~l~G~~n~~N~laAia~a~~l----g---------------i~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Ds 365 (397)
...+.+.|.||..|+..|+.++... | +++ ....+|+++.| |||.|++..+++.+++.|
T Consensus 265 ~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~w-PGR~qil~~~~~~~~llD- 341 (496)
T KOG2525|consen 265 GVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTDW-PGRLQILEYGRGVTWLLD- 341 (496)
T ss_pred CCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCH-HHhcchhhccC-CCceEEEecCCCcEEEec-
Confidence 2336788999999999998887652 1 343 45569999998 999999998788899999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 015950 366 YNANPISTRAAIDLLKD 382 (397)
Q Consensus 366 yahnp~s~~~~l~~l~~ 382 (397)
.||||+||+++-+++++
T Consensus 342 GAHt~eSaea~~~w~~~ 358 (496)
T KOG2525|consen 342 GAHTKESAEACAKWFRK 358 (496)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999999998
No 45
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=99.44 E-value=3.1e-15 Score=116.44 Aligned_cols=72 Identities=32% Similarity=0.479 Sum_probs=63.8
Q ss_pred CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccC--C--C-----CCccEEEEcCCCCccHHH
Q 015950 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--N--N-----WDKGFVQVEGNGNVNTLN 116 (397)
Q Consensus 46 i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~--~--~-----~~~~~i~v~~~~~~d~~~ 116 (397)
|++|++|||.+++ |++|+|++|.++|||+|+++|++ +||.++++++.. + . ...++|.|+ |+++
T Consensus 2 i~~i~~dSr~v~~--g~lF~a~~G~~~dG~~fi~~a~~-~Ga~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-----~~~~ 73 (83)
T PF01225_consen 2 IHGISIDSRKVSP--GALFFAIKGERVDGHDFIEDAIA-KGAAAVVVDKDASISPDNPEVPAADVPVIPVE-----DTRQ 73 (83)
T ss_dssp EEEEETTSGGHHH--HHHHHHHTTSEEEEECSCHHHHH-TT-EEEESSSGGTSTTTSHHHHHHHHTTEEEE-----EHHH
T ss_pred EEEEEECcCccCh--hHEEEEcCCccccchhhhhHHHH-CCCeEEEEcCccccccccHhHHhcCCCEEEEC-----CHHH
Confidence 6789999999999 99999999999999999999999 999999999876 1 1 156889999 9999
Q ss_pred HHHHHHHHh
Q 015950 117 SLVNMACYA 125 (397)
Q Consensus 117 aL~~la~~~ 125 (397)
+|++|++.|
T Consensus 74 ~L~~la~~~ 82 (83)
T PF01225_consen 74 ALGELAAAF 82 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999943
No 46
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=98.92 E-value=2.1e-09 Score=84.99 Aligned_cols=47 Identities=28% Similarity=0.447 Sum_probs=40.7
Q ss_pred CCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhcc-CCCeEEEEEe
Q 015950 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI-ACNVVQCKWR 393 (397)
Q Consensus 346 ~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~-~~~rv~~v~~ 393 (397)
+|||||++...++++||+| |||||+|+++++++++++ +.+++++|+.
T Consensus 1 vpgR~e~v~~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp ETTSSEEEEEETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCCcEEEeeCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 4899999998889999999 999999999999999987 5688888876
No 47
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.72 E-value=0.19 Score=47.94 Aligned_cols=120 Identities=24% Similarity=0.339 Sum_probs=73.4
Q ss_pred HhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE---------cCCCC-cCcc---------c-----hh--
Q 015950 124 YARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV---------G-----VA-- 175 (397)
Q Consensus 124 ~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~---------t~g~~-n~~~---------g-----~p-- 175 (397)
.|.+ .-+..+|||||+ .||||...-|..-|...|.+|.. |.|+. .+++ + +|
T Consensus 44 l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr 122 (323)
T COG1703 44 LYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR 122 (323)
T ss_pred Hhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC
Confidence 4444 455789999997 68999999999999999998731 22221 1111 0 01
Q ss_pred -------hh---hhc-c-cCCCcEEEEeecCCCcchHH-hhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccC
Q 015950 176 -------LS---LIG-I-DRAVDIAVLEMGMSGKGEIL-ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242 (397)
Q Consensus 176 -------~~---l~~-~-~~~~~~~VlE~~~~~~~~~~-~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~ 242 (397)
.. +.. + -.+.|+.++|.. +.|+-+ ++.+ -.|+.+++-+. |.=+++.-.|+.+++-
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETV--GvGQsev~I~~--~aDt~~~v~~p-------g~GD~~Q~iK~GimEi- 190 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETV--GVGQSEVDIAN--MADTFLVVMIP-------GAGDDLQGIKAGIMEI- 190 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEEEEec--CCCcchhHHhh--hcceEEEEecC-------CCCcHHHHHHhhhhhh-
Confidence 00 011 1 368999999985 444322 2333 34555555442 2235566678888864
Q ss_pred CCCcEEEEcCCCHhHH
Q 015950 243 KLGDVCVLNADDPLVA 258 (397)
Q Consensus 243 ~~~~~~vln~Dd~~~~ 258 (397)
....|+|..|....
T Consensus 191 --aDi~vINKaD~~~A 204 (323)
T COG1703 191 --ADIIVINKADRKGA 204 (323)
T ss_pred --hheeeEeccChhhH
Confidence 56899999886544
No 48
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.15 E-value=1.7 Score=40.93 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=64.8
Q ss_pred HHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE---------cCCCC-cCcc----------------
Q 015950 121 MACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV---------------- 172 (397)
Q Consensus 121 la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~---------t~g~~-n~~~---------------- 172 (397)
|...|.+ .-+..+|||||+ .||||...-|...|++.|.+|.. |.|.+ ..++
T Consensus 19 l~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 19 LKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSM 97 (266)
T ss_dssp HHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE
T ss_pred HHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeec
Confidence 4445554 445789999997 68999999999988899998741 11221 1111
Q ss_pred -------chhhhhh----cc-cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcc
Q 015950 173 -------GVALSLI----GI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240 (397)
Q Consensus 173 -------g~p~~l~----~~-~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~ 240 (397)
|++.... -+ ..+.|+.++|.---+..++ ++.++.+.-+.|++--.-|-+.. .|+.+++
T Consensus 98 atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-~I~~~aD~~v~v~~Pg~GD~iQ~---------~KaGimE 167 (266)
T PF03308_consen 98 ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-DIADMADTVVLVLVPGLGDEIQA---------IKAGIME 167 (266)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-HHHTTSSEEEEEEESSTCCCCCT---------B-TTHHH
T ss_pred CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-HHHHhcCeEEEEecCCCccHHHH---------Hhhhhhh
Confidence 1111111 12 3689999999841122233 34455566666666655454433 4555554
Q ss_pred cCCCCcEEEEcCCCHh
Q 015950 241 ESKLGDVCVLNADDPL 256 (397)
Q Consensus 241 ~~~~~~~~vln~Dd~~ 256 (397)
- ....|+|..|..
T Consensus 168 i---aDi~vVNKaD~~ 180 (266)
T PF03308_consen 168 I---ADIFVVNKADRP 180 (266)
T ss_dssp H----SEEEEE--SHH
T ss_pred h---ccEEEEeCCChH
Confidence 3 357899987743
No 49
>PRK06696 uridine kinase; Validated
Probab=91.83 E-value=0.45 Score=43.74 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=35.0
Q ss_pred HHHHHHHHHHh-hcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACYA-RNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~~-~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.+.+|+... ........+|||+| -.||||.+..|++.|.+.|..+.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34566777733 22234567999999 68999999999999977676553
No 50
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=91.77 E-value=0.84 Score=44.61 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.|||.| .|-.|||+++..|...|++.|++++
T Consensus 46 ~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 46 RAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 345789999 8999999999999999999999874
No 51
>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.
Probab=91.56 E-value=0.31 Score=36.41 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=37.0
Q ss_pred cccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC---CCCccEEEEcCCCCccHHHHHHHHHHH
Q 015950 56 LAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACY 124 (397)
Q Consensus 56 v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~---~~~~~~i~v~~~~~~d~~~aL~~la~~ 124 (397)
.++ |+|=|. +...|++++.. -.|.+||+++... ..+.++|+|+ |++.++.++.++
T Consensus 14 A~~--~~isF~------~~~ky~~~l~~-s~A~avlv~~~~~~~~~~~~~~iiv~-----nP~~afa~~~~~ 71 (72)
T PF04613_consen 14 AGP--GDISFL------DNPKYLKELKN-SKAGAVLVPEEFAEEVPEGKALIIVD-----NPRLAFAKLLQL 71 (72)
T ss_dssp --T--TEEEEE-------SSCGGGGGGG----SEEEEEHHHHTCCCSSSEEEECS------HHHHHHHHHHH
T ss_pred cCC--CCEEEe------cCHHHHHHHHh-CCCeEEEEcchhcccCCCCccEEEEC-----CHHHHHHHHHHh
Confidence 456 888665 44567877777 7788888887622 2378999999 999999998874
No 52
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=91.30 E-value=0.33 Score=48.63 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHH-hhcCCCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 113 NTLNSLVNMACY-ARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~-~~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..+....++.. .+.+..+.++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL 139 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL 139 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 555544445443 33334557899999 888999999999999988999985
No 53
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=90.80 E-value=0.38 Score=48.24 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=38.2
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 113 NTLNSLVNMAC-YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~-~~~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.++.+..+.. ..+.+..+.++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 86 ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVL 139 (388)
T PRK13705 86 QINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVL 139 (388)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeE
Confidence 55555555555 333344567899999 899999999999999988999985
No 54
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.56 E-value=0.3 Score=45.28 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g 166 (397)
+|+|+|.-||||+..-|+.-|++.|++|..|.-
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999865543
No 55
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.12 E-value=0.25 Score=44.31 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCC
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~ 160 (397)
+|||+| ..||||++..|...|.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689999 789999999999999767765
No 56
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=90.09 E-value=0.64 Score=46.24 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=41.5
Q ss_pred CccHHHHHHHHHHHhh-cCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 111 NVNTLNSLVNMACYAR-NSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 111 ~~d~~~aL~~la~~~~-~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|.|+.+-|.++-..+. .+...+++|+|+| -.||||...-|-..|++.|++++
T Consensus 183 nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~ 237 (366)
T PRK14489 183 NVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIG 237 (366)
T ss_pred cCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 7899998887766433 2244588999999 57999999999999988899884
No 57
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.32 E-value=1.7 Score=42.17 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=46.7
Q ss_pred CchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcC---CCChHHHHHH
Q 015950 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTG---SVGKSTTKSM 149 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTG---TnGKTTT~~~ 149 (397)
+.......|+. .||.-++.-+.. -. +..+++..+ ...+....++|+|+| -.||||++.-
T Consensus 52 ~~~~~~~~a~~-~Ga~~~l~~P~~---------~~-----~l~~~l~~~---~~~~~~~~~vIav~~~KGGvGkTT~a~n 113 (322)
T TIGR03815 52 PGGALWRAAAA-VGAEHVAVLPEA---------EG-----WLVELLADL---DQSPPARGVVVAVIGGRGGAGASTLAAA 113 (322)
T ss_pred CCHHHHHHHHH-hChhheeeCCCC---------HH-----HHHHHHHhh---ccCCCCCceEEEEEcCCCCCcHHHHHHH
Confidence 34556777888 998755542211 11 333333333 233345678888876 4689999999
Q ss_pred HHHHHHhCCCCeE
Q 015950 150 IALALESLGVNVF 162 (397)
Q Consensus 150 l~~iL~~~g~~v~ 162 (397)
|+..|...|++|.
T Consensus 114 LA~~la~~g~~Vl 126 (322)
T TIGR03815 114 LALAAARHGLRTL 126 (322)
T ss_pred HHHHHHhcCCCEE
Confidence 9999988888874
No 58
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.29 E-value=0.83 Score=41.14 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++++|+||++ .||||++..|+..|...|++|.
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTL 50 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 334788998854 5799999999999988899885
No 59
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=89.14 E-value=2 Score=42.30 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=57.7
Q ss_pred CccHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC---CC
Q 015950 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (397)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~---~~ 100 (397)
+|+|+||++.+++++.++.+ +++++.=. +..+ ++|=|. +...|.+..-. -.|.++|+++.... ..
T Consensus 2 ~~~l~~i~~~~~~~~~~~~~~~i~gva~l~-~a~~--~~LsFl------~~~k~~~~l~~-~~A~a~Iv~~d~~~~~p~~ 71 (343)
T PRK00892 2 SLTLAELAELLGAELVGDGDIEITGVASLE-EAGP--GQISFL------ANPKYRKQLAT-TKAGAVIVSPDDAEFVPAG 71 (343)
T ss_pred CccHHHHHHHhCCEEeCCCCceEEeecccc-cCCC--CeEEEE------cCchhHHHHhc-cCCeEEEechhhhhhccCC
Confidence 57999999999998876433 55554322 3355 787444 23456665545 77888888765432 24
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHh
Q 015950 101 KGFVQVEGNGNVNTLNSLVNMACYA 125 (397)
Q Consensus 101 ~~~i~v~~~~~~d~~~aL~~la~~~ 125 (397)
..++.++ |++.++..+.+.+
T Consensus 72 ~~~i~~~-----~p~~~~~~~~~~~ 91 (343)
T PRK00892 72 NALLVVK-----NPYLAFARLAQLF 91 (343)
T ss_pred ceEEEeC-----CHHHHHHHHHHHh
Confidence 5677899 9999999988843
No 60
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=89.14 E-value=0.52 Score=47.58 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=31.5
Q ss_pred hcCCCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|..++++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 115 r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL 154 (405)
T PRK13869 115 RRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL 154 (405)
T ss_pred CCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 3344567899998 888999999999999988999985
No 61
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=88.84 E-value=2.4 Score=36.01 Aligned_cols=30 Identities=30% Similarity=0.332 Sum_probs=23.3
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|+|+|.| -.||||....|-..|.+.|+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 5788888 57999999999988988999985
No 62
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=88.77 E-value=1.4 Score=39.95 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHhh--c----CCCCCcEEEEc---CCCChHHHHHHHHHHHHh-CCCCeE
Q 015950 113 NTLNSLVNMACYAR--N----SRFSGVLVGVT---GSVGKSTTKSMIALALES-LGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~~~--~----p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~-~g~~v~ 162 (397)
-+.+++.+|..... . +....++|+|| |-.||||++..|++.|.. .|++|.
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL 69 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 44555555555221 1 23457899999 578999999999999954 588884
No 63
>PRK15453 phosphoribulokinase; Provisional
Probab=88.31 E-value=0.65 Score=44.34 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.6
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCC
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 160 (397)
.+.++|+|||+ .||||+++.++++|+..+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~ 35 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENIN 35 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 35689999997 57999999999999765544
No 64
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.02 E-value=1.4 Score=41.66 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH--hhcCCCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 114 TLNSLVNMACY--ARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 114 ~~~aL~~la~~--~~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+++..|... +.......++|+|| |-.||||++..|+..|...|.+|.
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34666666652 22224557899999 678999999999999988898885
No 65
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=87.97 E-value=1.6 Score=42.48 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=65.5
Q ss_pred CCccHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC---C
Q 015950 25 PIWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---W 99 (397)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~---~ 99 (397)
+.++|+||++.++.++.++.+ ++++..= .+-.+ ++++|. ++..|.++... -.|.+|++++.... .
T Consensus 2 ~~~~l~~la~~~~~e~~g~~~~~i~~va~l-~~a~~--~~i~f~------~~~ky~~~l~~-s~Agaviv~~~~~~~~~~ 71 (338)
T COG1044 2 PSYTLAELAQQLGAELRGDGDRVITGVAPL-DEAQP--GDISFL------ANPKYRKELKT-SRAGAVIVSAKDAAFAPA 71 (338)
T ss_pred ccchHHHHHHhhCcEEecCCceeeeecchh-hhcCc--ccceee------cChhhhhhccc-CcccEEEecHHHHhcccC
Confidence 346899999999998877543 5665433 34456 788776 66778888888 88899998865432 2
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHhhc
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMACYARN 127 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~~~~~ 127 (397)
+.+++.++ |+..+++.++.++..
T Consensus 72 ~~~~Lv~~-----~P~~~fA~~~~~f~~ 94 (338)
T COG1044 72 KKNALVVK-----DPYLAFAKVAQLFYR 94 (338)
T ss_pred CceEEEeC-----CchHHHHHHHHHhcc
Confidence 67889999 999999999994433
No 66
>PRK07667 uridine kinase; Provisional
Probab=87.95 E-value=1.2 Score=39.89 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=25.8
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
..+|||+| -.||||++..|.+.|...|.++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 36999999 6799999999999997777664
No 67
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=87.32 E-value=0.3 Score=50.25 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhc----ccCCCcEEEEeecCCCcchHHhhcc
Q 015950 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG----IDRAVDIAVLEMGMSGKGEILELAR 205 (397)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~----~~~~~~~~VlE~~~~~~~~~~~~~~ 205 (397)
...++|.|+||+||+++..+....+.+.+.++++..|+ |...++...+.. ....+.++..|.-.-+++... -+.
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGT-NgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~-~~~ 139 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGT-NGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILE-PTG 139 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCC-CcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCccc-ccC
Confidence 34569999999999999999999996645777665564 333333222221 234466666666433233333 233
Q ss_pred ccCCcEEEEcCCChhhhccCCC
Q 015950 206 MARPEIRVVLNVGDSHLESLGS 227 (397)
Q Consensus 206 ~i~p~iaViTNi~~dHld~~gs 227 (397)
...|+...++|+-.|++|..++
T Consensus 140 ~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 140 LTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred CCCccHHHHHHHHHHHHHcCCc
Confidence 5789999999999999998775
No 68
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=86.85 E-value=0.74 Score=40.52 Aligned_cols=26 Identities=38% Similarity=0.732 Sum_probs=20.5
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|+|||| .||||++..|+ -| |+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence 36999999 57999999988 44 67664
No 69
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=86.68 E-value=0.88 Score=39.72 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.8
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++++|+|. .||||..+=|...|++.|++|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEE
Confidence 689999995 6999999999999999999984
No 70
>PRK05439 pantothenate kinase; Provisional
Probab=86.39 E-value=1.7 Score=42.21 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcC-CCCCcEEEEcCC--CChHHHHHHHHHHHHh
Q 015950 117 SLVNMACYARNS-RFSGVLVGVTGS--VGKSTTKSMIALALES 156 (397)
Q Consensus 117 aL~~la~~~~~p-~~~~~vI~VTGT--nGKTTT~~~l~~iL~~ 156 (397)
.-..+..|+..+ ....-+|||||+ .||||++..|..+|..
T Consensus 70 ~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 70 LQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 333344455521 234568999995 6799999999999954
No 71
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=86.03 E-value=0.99 Score=34.42 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEcCC--CChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecC
Q 015950 135 VGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (397)
Q Consensus 135 I~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~ 194 (397)
|.++|. .||||++..++..|++.|+++.... |+.++|.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~--------------------d~iivD~~~ 43 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID--------------------DYVLIDTPP 43 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC--------------------CEEEEeCCC
Confidence 556654 6999999999999988888875322 888888863
No 72
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=85.61 E-value=2.6 Score=41.21 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=56.8
Q ss_pred HHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC--CCccEEEE
Q 015950 31 EIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106 (397)
Q Consensus 31 ~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~--~~~~~i~v 106 (397)
||++.+++++.++.+ +++++.= ....+ ++|-|+ ....|++++.+ ..|.+++++++... +..+++.|
T Consensus 1 ~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~l~f~------~~~k~~~~l~~-~~a~aviv~~~~~~~~~~~~~~~v 70 (324)
T TIGR01853 1 ELAERLGAELKGNGDIVITGVAPL-EKAKA--NHITFL------ANPKYLKHLKS-SQAGAVIVSPDDQGLPAKCAALVV 70 (324)
T ss_pred ChhHHhCCEEeCCCCceEEcccCh-hhCCC--CeEEEE------eCHHHHHHHhh-cCCcEEEecchhhcccCcceEEEE
Confidence 577888888766433 5555432 23456 888766 34668988877 88999998765432 24568889
Q ss_pred cCCCCccHHHHHHHHHHHh
Q 015950 107 EGNGNVNTLNSLVNMACYA 125 (397)
Q Consensus 107 ~~~~~~d~~~aL~~la~~~ 125 (397)
+ |++.++.++..++
T Consensus 71 ~-----~p~~~~~~~~~~~ 84 (324)
T TIGR01853 71 K-----DPYLAFAKVAELF 84 (324)
T ss_pred C-----CHHHHHHHHHHHh
Confidence 9 9999999999855
No 73
>COG2403 Predicted GTPase [General function prediction only]
Probab=85.59 E-value=0.91 Score=44.59 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..|+|+|||| .|||+++..++++|++.||++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 3678999987 6999999999999999999974
No 74
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=85.18 E-value=1.2 Score=40.93 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=27.7
Q ss_pred CcEEEEcCCC---ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~v~ 162 (397)
++.+-||||. |||.++..|.+.|+..|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4678999985 999999999999999999874
No 75
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=84.98 E-value=3.6 Score=34.55 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=42.0
Q ss_pred EEcCC-CChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcc-------hHHhhcccc
Q 015950 136 GVTGS-VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG-------EILELARMA 207 (397)
Q Consensus 136 ~VTGT-nGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~-------~~~~~~~~i 207 (397)
-|||+ .|||+++.-+...|++.|.++..-.-. ..+|+.++|-. ++.. ...++.+.+
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~---------------~~~d~vliEGa-Gg~~~p~~~~~~~~d~~~~~ 67 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLKPV---------------QTYDFVLVEGA-GGLCVPLKEDFTNADVAKEL 67 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecC---------------CCCCEEEEECC-CccccCCCCCCCHHHHHHHh
Confidence 34443 799999999999998899988532110 01689999964 2221 223333344
Q ss_pred CCcEEEEcCCCh
Q 015950 208 RPEIRVVLNVGD 219 (397)
Q Consensus 208 ~p~iaViTNi~~ 219 (397)
+..+.++++...
T Consensus 68 ~~~vllV~~~~~ 79 (134)
T cd03109 68 NLPAILVTSAGL 79 (134)
T ss_pred CCCEEEEEcCCC
Confidence 666777776553
No 76
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=84.34 E-value=1.4 Score=40.78 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=26.7
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+| -.||||+..-|...|+..|++|.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~ 33 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVA 33 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEE
Confidence 46899999 78999999888888888898874
No 77
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=82.88 E-value=1.7 Score=43.44 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.++|+|+ |-.|||||+.-|+..|...|++|.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 4556788887 678999999999999988899984
No 78
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=82.73 E-value=12 Score=29.22 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=34.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~ 195 (397)
+++--|-.||||++..++..|...|.++..-.. +...++.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~---------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL---------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC---------------CCCCCEEEEeCcCC
Confidence 456678999999999999999777877742211 11168999998743
No 79
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.60 E-value=1.3 Score=42.99 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=26.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.||-+.|.| |||||..=|++.|.+.|++|.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vl 171 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVL 171 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEE
Confidence 5577777766 699999999999999999984
No 80
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=82.47 E-value=2.2 Score=37.88 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=27.6
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEc
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
.++|.|.| ..||||.+.+|++-|...|+++...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46799999 5799999999999998888877533
No 81
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=82.13 E-value=6.7 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.|||.| +|-.|||-++.+|...|++.|++++
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 456788887 7899999999999999999999873
No 82
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=3.9 Score=40.62 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=51.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHhCCCCeEEcC-CCCc-----------Cccch----------hhhhhc------ccCCCc
Q 015950 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSY-GNWN-----------NRVGV----------ALSLIG------IDRAVD 186 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~-g~~n-----------~~~g~----------p~~l~~------~~~~~~ 186 (397)
||+-| .|||||+.=++..++..|+++...- .+|. ...++ |..+.. -++++|
T Consensus 107 VGLqG-~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 107 VGLQG-SGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred EeccC-CCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 44444 4799999999999999999984211 1111 11122 333331 157899
Q ss_pred EEEEeecCCCc------chHHhhccccCCcEEEEc
Q 015950 187 IAVLEMGMSGK------GEILELARMARPEIRVVL 215 (397)
Q Consensus 187 ~~VlE~~~~~~------~~~~~~~~~i~p~iaViT 215 (397)
+.++..|-.|. .++..+++.++||-.|+-
T Consensus 186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~V 220 (483)
T KOG0780|consen 186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFV 220 (483)
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999875443 245567777899977663
No 83
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=81.50 E-value=1.7 Score=38.53 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.1
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
+|+|+| ..||||.+..|...|...|.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 478888 4689999999999997666655
No 84
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.44 E-value=1.6 Score=40.73 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
++++.|-.||||++.-|+..|...|.+|..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 456677889999999999999999999853
No 85
>COG4240 Predicted kinase [General function prediction only]
Probab=81.32 E-value=3.9 Score=37.78 Aligned_cols=49 Identities=31% Similarity=0.408 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHHhCC-CCeE
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLG-VNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g-~~v~ 162 (397)
-....+.+++.++.. ..+.-++||.|. .||||++..|..+|.+.| +++.
T Consensus 32 l~Lpll~Kiap~~qe-~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~ 83 (300)
T COG4240 32 LHLPLLAKIAPWAQE-RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTA 83 (300)
T ss_pred HHHHHHHhhhhhhhh-cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceE
Confidence 455556666654433 455668999995 789999999999998887 4653
No 86
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.18 E-value=1.5 Score=40.18 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.1
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~ 155 (397)
+..+|||+| ..||||.+..|...|.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346899999 7899999999999994
No 87
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=81.11 E-value=2 Score=40.69 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.9
Q ss_pred cEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|. |-.|||||+--|+..|.+.|++|.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 456665 467799999999999999999984
No 88
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=80.92 E-value=3 Score=40.47 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+.|||.| .|-.|||.++.+|+..|++.|++++
T Consensus 25 ~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 62 (311)
T TIGR00682 25 RAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVG 62 (311)
T ss_pred cCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEE
Confidence 456788887 4899999999999999999998873
No 89
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=80.88 E-value=2.2 Score=40.42 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=25.7
Q ss_pred cEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|+ |=.|||||+--|+..|.+.|++|.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl 33 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL 33 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 567776 467899999999999999999984
No 90
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=80.71 E-value=1.6 Score=39.55 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=21.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+||+|| -.||||++.+++. + |+++.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEE
Confidence 46899999 5899999988876 4 77774
No 91
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.57 E-value=1.8 Score=41.10 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.8
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+|||||+ .||||++.-+.++|+..|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 5899996 589999999999998777654
No 92
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=80.44 E-value=2.3 Score=39.22 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=25.8
Q ss_pred CcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|++ -.||||++.-|+..|...|++|.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 35677754 77999999999999988899985
No 93
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=80.44 E-value=2.6 Score=36.68 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.8
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+| -.||||....|...|+..|++++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~ 33 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVA 33 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 46899999 67999999999999988888873
No 94
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=80.20 E-value=15 Score=37.28 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.3
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|.++| -.|||||+.-|+..|+..|++|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 46888888 56899999999999988888874
No 95
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=79.96 E-value=2.7 Score=40.08 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
+++|+|+| ..||||...-|...|++.| +|
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V 31 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RV 31 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CE
Confidence 46899999 8899999999999998888 76
No 96
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=79.93 E-value=1.9 Score=39.55 Aligned_cols=30 Identities=47% Similarity=0.614 Sum_probs=26.3
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|.|| |-.|||||+.-|...|...|.||.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence 467777 778999999999999999999984
No 97
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=79.64 E-value=5.4 Score=39.12 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+..+|+|||. .||||+...+...|+..|.++.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 345679999996 5899999999999988888763
No 98
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=79.01 E-value=3.3 Score=37.75 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=32.3
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccc
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g 173 (397)
...|.+-| -.||||.+.+|+..|++.|++|..|.-...+++|
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ig 46 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIG 46 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHH
Confidence 45788888 5799999999999999999998766443223333
No 99
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.89 E-value=3.1 Score=39.54 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=26.3
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.++|+++|. .|||||+.-|+..|...|++|.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 4568888884 6899999999999988888874
No 100
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=78.76 E-value=2.8 Score=38.79 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.9
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|+ |=.|||||+..|+..|.+.|++|.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl 34 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA 34 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 456665 567899999999999999999884
No 101
>PRK10037 cell division protein; Provisional
Probab=78.69 E-value=2.9 Score=39.03 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=25.2
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|. |=.|||||+.-|+..|...|++|.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVL 34 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEE
Confidence 456665 567899999999999999999985
No 102
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.46 E-value=2.1 Score=38.55 Aligned_cols=27 Identities=52% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v 161 (397)
+||-|| .|||||..=|+..+...+.++
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v 32 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKV 32 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--E
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccc
Confidence 455666 489999999999998778877
No 103
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=77.72 E-value=5 Score=39.47 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCCCCeE-EcCC
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF-QSYG 166 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~v~-~t~g 166 (397)
+.+.|||.| .|-.|||-++.+|+..|++.|++++ -+.|
T Consensus 53 ~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 53 RLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred cCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 456788887 7999999999999999999999874 3444
No 104
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=77.64 E-value=3.5 Score=36.30 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.7
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeEE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+|+|.| ..||||.+..|+..|...|+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 678888 579999999999999888888753
No 105
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=77.30 E-value=2.4 Score=38.46 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=24.0
Q ss_pred EEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+|+ |-.||||++.-|++.|.+.|++|.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvL 32 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVL 32 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEE
Confidence 35554 578999999999999999999884
No 106
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.10 E-value=36 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++.| -.|||||...|+..|...|+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg 273 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 273 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE
Confidence 35777777 45899999999999988888774
No 107
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.06 E-value=3.3 Score=36.23 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=27.2
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
.-|+|||- .||||.+.-|+..|+..|+++++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 45999995 68999999999999999999864
No 108
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=77.03 E-value=3.2 Score=42.06 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.6
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+| -.||||...-|-..|+..|++|.
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVa 33 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVS 33 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 57899999 78999999999999989999984
No 109
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=76.55 E-value=2.9 Score=39.16 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=22.8
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.||||++.-|++.|...|++|.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 6789999999999999988999984
No 110
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=76.50 E-value=2.8 Score=36.86 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=24.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+.-|=.||||++..|+..|...|++|.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vl 31 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVL 31 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccc
Confidence 45566788999999999999988899984
No 111
>PRK00784 cobyric acid synthase; Provisional
Probab=76.41 E-value=3 Score=43.14 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.2
Q ss_pred cEEEEcCC---CChHHHHHHHHHHHHhCCCCe
Q 015950 133 VLVGVTGS---VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 133 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v 161 (397)
+.|-|||| .|||+++..|.+.|++.|++|
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v 34 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRV 34 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 45778877 899999999999999988876
No 112
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=76.17 E-value=4.8 Score=38.69 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..-+|||+|.+ ||||++.+|..+|..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999965 799999999999953
No 113
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=75.78 E-value=14 Score=35.51 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=27.7
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
.....+|+|+|. .||||+...+...|...|+++
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v 65 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKV 65 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 345789999995 589999999999998888877
No 114
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=75.68 E-value=3.4 Score=39.22 Aligned_cols=30 Identities=40% Similarity=0.405 Sum_probs=24.9
Q ss_pred cEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|. |=.|||||+--|++.|...|++|.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 455555 578999999999999999999884
No 115
>PHA02518 ParA-like protein; Provisional
Probab=75.38 E-value=3 Score=37.33 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+--|-.||||++..|+..|.+.|++|.
T Consensus 6 ~~~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 6 LNQKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred EcCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3344678899999999999988899884
No 116
>PLN02924 thymidylate kinase
Probab=75.19 E-value=4.9 Score=36.92 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEE
Q 015950 128 SRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 128 p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
|....++|.|.| -.||||.+.+|+..|+..|+++..
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~ 49 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAEL 49 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCcee
Confidence 345567899999 689999999999999999988743
No 117
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=74.89 E-value=6.9 Score=35.96 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCCCcEEEEcCCC--ChHHHHHHHHHHHHhCCCC
Q 015950 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (397)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~ 160 (397)
..+..+|||+|-+ ||||.+..|..+|+..+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 3456799999964 6999999999999765544
No 118
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=74.78 E-value=4.7 Score=39.49 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|+|+| ..||||++.-|+..|...|++|.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVl 63 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVL 63 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4567888876 78999999999999988899884
No 119
>PRK10867 signal recognition particle protein; Provisional
Probab=74.60 E-value=26 Score=35.72 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=25.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhC-CCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESL-GVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~-g~~v~ 162 (397)
..+|.++| -.|||||+.-|+..|... |.+|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~ 133 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVL 133 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEE
Confidence 45788888 468999999999988777 88773
No 120
>PRK14974 cell division protein FtsY; Provisional
Probab=74.40 E-value=4.6 Score=39.65 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=26.9
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..+|+++|. .|||||..-++..|...|+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~ 172 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3568999995 5799999999999988888874
No 121
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=74.34 E-value=4.1 Score=35.20 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+|+| -.||||+...|...|+..|+++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~ 31 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVA 31 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 467777 46899999999999988898874
No 122
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=73.95 E-value=3.7 Score=37.69 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=19.6
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHh
Q 015950 134 LVGVTGS--VGKSTTKSMIALALES 156 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~ 156 (397)
+|||+|. .||||++..|..+|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5889995 5899999999999953
No 123
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=73.82 E-value=5.4 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=27.4
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+++++|+| -.||||...-|...|...|++++
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg 38 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPG 38 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEE
Confidence 3467999999 57999999999999977788873
No 124
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=73.36 E-value=3.1 Score=35.88 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..|-|-|||| .||||+++.|+..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3566899998 57999999999777
No 125
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=72.59 E-value=4.5 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.|||||+..|++.|...|+||.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4678999999999999999999984
No 126
>PRK00698 tmk thymidylate kinase; Validated
Probab=72.33 E-value=6.5 Score=34.98 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=26.5
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
.++|.|.| ..||||.+..|+.-|...|..+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 46899999 689999999999999877766543
No 127
>PRK00889 adenylylsulfate kinase; Provisional
Probab=72.22 E-value=5.9 Score=34.53 Aligned_cols=31 Identities=39% Similarity=0.462 Sum_probs=25.6
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
+..+|.++| -.||||++..|+..|...|.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 356899999 5789999999999997766655
No 128
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=72.05 E-value=3.1 Score=37.17 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+|||+| ..||||++..|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 588998 578999999999999
No 129
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=72.03 E-value=4.5 Score=35.05 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+-.|-.||||++..|+..|.+.|++|.
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vl 32 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVV 32 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 44556788999999999999988999984
No 130
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.00 E-value=11 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=22.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH-hCC-CCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~-~~g-~~v 161 (397)
..+|++.|-| |||||...|+..+. ..| .+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV 218 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQL 218 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeE
Confidence 4577777765 79999999998773 455 355
No 131
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.98 E-value=3.6 Score=33.25 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+|+|+|. .||||++..|++-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5777774 68999999999988 5554
No 132
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=71.67 E-value=4.3 Score=38.48 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=24.9
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCC
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 160 (397)
..-+|||.|| .||+||+..+..+|+..+-.
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 3458999998 58999999999999766554
No 133
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=71.45 E-value=3.5 Score=38.72 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.|||||+.-|+..|.+.|++|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 5788999999999999988899984
No 134
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=71.41 E-value=5.3 Score=38.40 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCcEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++++|+|. |-.|||||+.-|+..|.+.|++|.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVL 36 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKIL 36 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 35677665 467899999999999999999984
No 135
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=71.03 E-value=5.5 Score=36.88 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=24.9
Q ss_pred cEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|++ -.||||++..++..|...|++|.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vl 34 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEE
Confidence 4666654 67899999999999988898884
No 136
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.76 E-value=11 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCCCc-EEEEcCC--CChHHHHHHHHHHHHhCCCC
Q 015950 118 LVNMACYARNSRFSGV-LVGVTGS--VGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 118 L~~la~~~~~p~~~~~-vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 160 (397)
+..+..+...|..+.| |+...|. .|||-+++||+.-|-..|.+
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 3344444444333333 4444443 38999999999998666654
No 137
>PTZ00301 uridine kinase; Provisional
Probab=70.33 E-value=4.7 Score=36.81 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.6
Q ss_pred cCCCHHHHHHHhcC-CCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhc
Q 015950 329 FGVSLAQVGISLSN-FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382 (397)
Q Consensus 329 lgi~~~~i~~~L~~-~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~ 382 (397)
-|.+++.+.+...+ ..+...++- .......-+|+..++.|+.++......++.
T Consensus 152 rG~~~e~v~~~~~~~v~~~~~~~I-~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~ 205 (210)
T PTZ00301 152 RGRTFESVIEQYEATVRPMYYAYV-EPSKVYADIIVPSWKDNSVAVGVLRAKLNH 205 (210)
T ss_pred cCCCHHHHHHHHHHhhcccHHHHc-CccccCCcEEEcCCCcchHHHHHHHHHHHH
Confidence 48888888775555 344333331 112233445555589999999877666654
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=70.12 E-value=3.8 Score=39.21 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCC
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGV 159 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~ 159 (397)
+-+.|=+|| |||+++..++..|...|+
T Consensus 61 vll~G~pGT-GKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 61 MSFTGNPGT-GKTTVALRMAQILHRLGY 87 (284)
T ss_pred EEEEcCCCC-CHHHHHHHHHHHHHHcCC
Confidence 446688888 999999999999976665
No 139
>PRK11670 antiporter inner membrane protein; Provisional
Probab=69.99 E-value=6.1 Score=39.36 Aligned_cols=31 Identities=42% Similarity=0.543 Sum_probs=27.1
Q ss_pred CcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.++|+|+ |-.|||||+.-|+..|.+.|++|.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVl 140 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVG 140 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4688887 567899999999999988899985
No 140
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=69.89 E-value=6.4 Score=36.27 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+-|||| .|||+++..|.+.|++.|++++
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~ 35 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVA 35 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3555555 7999999999999999999874
No 141
>PRK05480 uridine/cytidine kinase; Provisional
Probab=69.60 E-value=5.1 Score=36.10 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.1
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999994 69999999999998
No 142
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=69.57 E-value=4.2 Score=39.04 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=22.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.|||||+.-|+..|.+.|++|.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4688999999999999999999984
No 143
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=69.55 E-value=4.9 Score=37.74 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.|||||+.-|++.|...|++|.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4678999999999999998899984
No 144
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=69.07 E-value=6.2 Score=37.23 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=23.5
Q ss_pred EEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|+|. |=.||||++--|+..|.+.|++|.
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4444 578999999999999988899884
No 145
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=68.38 E-value=7.8 Score=37.78 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=25.6
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++.|- .|||||...|+..|...|.+|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 467777774 5799999999999988888874
No 146
>PRK07933 thymidylate kinase; Validated
Probab=68.25 E-value=7.9 Score=35.29 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=26.1
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeEEc
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
+|+|-| -.||||.+.+|+..|++.|++|..+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 567777 5799999999999999999988644
No 147
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=67.92 E-value=4.8 Score=37.66 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=21.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+||||| -.||||++.++..-+ |++++
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~---G~~vi 30 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH---HIEVI 30 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 35899999 589999998887543 66653
No 148
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=67.92 E-value=4.8 Score=37.87 Aligned_cols=30 Identities=40% Similarity=0.655 Sum_probs=24.5
Q ss_pred cEEEE--cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~V--TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+| -|-.|||||+.-|++.|...|++|.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34444 4678999999999999999999884
No 149
>PRK03846 adenylylsulfate kinase; Provisional
Probab=67.77 E-value=9.3 Score=34.20 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=26.2
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
.+..+|+++| -.||||.+.+|...|...|..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 3467999999 7899999999999886666554
No 150
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=67.57 E-value=3.5 Score=35.56 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=17.7
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|+||| +.||||++..|+.. |+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE
Confidence 78999 67999999888866 66553
No 151
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.40 E-value=39 Score=33.94 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.++|+++| -.|||||..-|+..+...|.+|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~ 238 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVG 238 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 356888888 67999999999988877788774
No 152
>PRK05380 pyrG CTP synthetase; Validated
Probab=67.27 E-value=14 Score=38.43 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=27.5
Q ss_pred CcEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 46788888 67999999999999999999983
No 153
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.10 E-value=12 Score=40.89 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEcCCC---ChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACY--ARNSRFSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~--~~~p~~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..|... +..+....++|+||++. ||||++.-|+..|...|.+|.
T Consensus 512 ~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVL 564 (726)
T PRK09841 512 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 564 (726)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3455554441 22224467899999965 999999999999988999985
No 154
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=66.79 E-value=7 Score=34.92 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=24.9
Q ss_pred EEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 4667776 6999999999999999998874
No 155
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=66.34 E-value=7 Score=36.28 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=23.2
Q ss_pred EEEEcC--CCChHHHHHH-HHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSM-IALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~-l~~iL~~~g~~v~ 162 (397)
.|+||| -.||||.+.+ +..+++..|++|.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VL 33 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVL 33 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 588886 7899999999 7777755558874
No 156
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=65.76 E-value=13 Score=37.48 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.7
Q ss_pred EEEcCC---CChHHHHHHHHHHHHhCCCCe
Q 015950 135 VGVTGS---VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 135 I~VTGT---nGKTTT~~~l~~iL~~~g~~v 161 (397)
|.|.|| .||||++.-|-..|++.|++|
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 344444 699999999999999998776
No 157
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=65.75 E-value=4.8 Score=35.77 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=19.6
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+||||| -.||||++.++.. .|+++.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 699999 5899999988876 577764
No 158
>PRK08233 hypothetical protein; Provisional
Probab=65.72 E-value=5.4 Score=34.70 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.9
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+|+|+|. .||||.+..|+..|
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999994 68999999999988
No 159
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=65.56 E-value=5.9 Score=34.61 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.++|+|+| |.||||.+.-|+.++
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~f 32 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIF 32 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHh
Confidence 57899999 899999999999999
No 160
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=65.34 E-value=7.4 Score=39.85 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=51.4
Q ss_pred CcEEEEcCC---CChHHHHHHHHHHHHhCCCCeEEc-CCCCcCc-------cchh--------h-------hhhcccCCC
Q 015950 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVFQS-YGNWNNR-------VGVA--------L-------SLIGIDRAV 185 (397)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~~t-~g~~n~~-------~g~p--------~-------~l~~~~~~~ 185 (397)
++.+-|||| .|||+++..|...|++.|++|..- .|..... .|.| . .+..+..+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~g~~~~~ld~~~~~~~~v~~~~~~~~~~~ 82 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAATGRPSRNLDSWMMGEELVRALFARAAQGA 82 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHhCCCcccCCceeCCHHHHHHHHHHhcccC
Confidence 566778876 459999999999999999877311 1210000 0111 0 011235678
Q ss_pred cEEEEeecCCC---------cchHHhhccccCCcEEEEcCCC
Q 015950 186 DIAVLEMGMSG---------KGEILELARMARPEIRVVLNVG 218 (397)
Q Consensus 186 ~~~VlE~~~~~---------~~~~~~~~~~i~p~iaViTNi~ 218 (397)
|++|+|-.++- .+...++++.+...+.++++..
T Consensus 83 D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 83 DIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred CEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 99999964211 0113355556677777777754
No 161
>PRK13973 thymidylate kinase; Provisional
Probab=64.99 E-value=12 Score=34.10 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.2
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEc
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
++|.+-| -.||||.+.+|++-|++.|+++..+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5677777 4699999999999999999998655
No 162
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=64.86 E-value=9.5 Score=33.11 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=26.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
..+|=+||. .||||.+..|.+-|.+.|.++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~ 35 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYL 35 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 357889994 68999999999999999998853
No 163
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.81 E-value=42 Score=34.06 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=24.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+|-..| -.|||||+.=|+..|+..|+++.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvl 132 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVL 132 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceE
Confidence 34555555 46999999999999999899884
No 164
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=64.63 E-value=31 Score=29.47 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchh----------hhhhcccCCCcEEEEeecCCCcchH-
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA----------LSLIGIDRAVDIAVLEMGMSGKGEI- 200 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p----------~~l~~~~~~~~~~VlE~~~~~~~~~- 200 (397)
.|.+-|. .||||.+..|..-- ..-.|+- ....+.+.+..| -.|.....+++++++=.+.......
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~-~~~~KTq-~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~ 80 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE-IRYKKTQ-AIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF 80 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC-CCcCccc-eeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC
Confidence 3445553 68999887766522 1112221 111111222222 2233446788888888776543211
Q ss_pred -Hhhcc-ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcc
Q 015950 201 -LELAR-MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQ 240 (397)
Q Consensus 201 -~~~~~-~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~ 240 (397)
...+. +-+|-++|||-+..+ .+-+++.++|..|-.
T Consensus 81 pP~fa~~f~~pvIGVITK~Dl~-----~~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 81 PPGFASMFNKPVIGVITKIDLP-----SDDANIERAKKWLKN 117 (143)
T ss_pred CchhhcccCCCEEEEEECccCc-----cchhhHHHHHHHHHH
Confidence 01111 348889999998654 245777777766654
No 165
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=64.38 E-value=8.2 Score=31.60 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 139 GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 139 GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|..||||++..+++.|.+.|.++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEE
Confidence 578999999999999988888874
No 166
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=64.23 E-value=5.6 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.8
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~ 155 (397)
.-+|||.| ..||||.+..+..+|.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~ 29 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFP 29 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHcc
Confidence 34899999 5799999999999993
No 167
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=64.04 E-value=8.8 Score=32.49 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=23.3
Q ss_pred EEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+|+| ..||||++..++..|.+.+.+|.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 555555 77999999999999988888874
No 168
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=63.94 E-value=14 Score=32.44 Aligned_cols=32 Identities=41% Similarity=0.540 Sum_probs=26.4
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
....+|.++| ..||||++..|...|...|..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~ 49 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRV 49 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3467999999 8999999999999997666544
No 169
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.96 E-value=8.5 Score=33.34 Aligned_cols=27 Identities=48% Similarity=0.528 Sum_probs=23.2
Q ss_pred EEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 136 ~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.--|-.||||++.-|+..|.+.|++|.
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vl 32 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVG 32 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEE
Confidence 345678999999999999988899984
No 170
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=62.92 E-value=5.7 Score=34.97 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEcCCC
Q 015950 141 VGKSTTKSMIALALESLGVNVFQSYGN 167 (397)
Q Consensus 141 nGKTTT~~~l~~iL~~~g~~v~~t~g~ 167 (397)
.||||.+.+|..-|+..|+++..+..+
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~~~~~ 33 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVIITFPP 33 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHcCCcccccCCC
Confidence 599999999999999999886544333
No 171
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=62.03 E-value=8.6 Score=35.39 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.9
Q ss_pred EEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 136 ~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+--|-.||||++.-|+..|.+.|++|.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 344678999999999999988898884
No 172
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=61.69 E-value=11 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=29.1
Q ss_pred CCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
...+++|+|.| -.||||..+-|-..|++.|++|.
T Consensus 7 ~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVa 42 (597)
T PRK14491 7 PLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLA 42 (597)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 34578999999 77999999999999988899884
No 173
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=61.63 E-value=5.3 Score=35.89 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCh--HHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTGSVGK--STTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTGTnGK--TTT~~~l~~iL~~~g~~v 161 (397)
.+.|+|+||||.|- |||+.....+++....+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 45789999999865 566677778887666543
No 174
>PRK11519 tyrosine kinase; Provisional
Probab=60.96 E-value=18 Score=39.33 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.6
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACY--ARNSRFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~--~~~p~~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..|-.. +..+..+.++|.||+ -.||||++.-|+..|...|.+|.
T Consensus 507 ~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvL 559 (719)
T PRK11519 507 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVL 559 (719)
T ss_pred HHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 4555555442 222345678999998 56999999999999988899985
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=60.76 E-value=8.7 Score=28.04 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+|+|+| ..||||.+..|.+.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 467888 468999999999999
No 176
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=60.53 E-value=9.4 Score=35.57 Aligned_cols=29 Identities=38% Similarity=0.471 Sum_probs=23.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH-hCCCCeE
Q 015950 134 LVGVTGSVGKSTTKSMIALALE-SLGVNVF 162 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~-~~g~~v~ 162 (397)
+...-|=.|||||+-.|+..|. ..|++|.
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 4556688999999999999996 4447884
No 177
>PRK13236 nitrogenase reductase; Reviewed
Probab=60.48 E-value=8.6 Score=36.93 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCcEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++++|.+- |-.|||||+--|+..|.+.|++|.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVL 38 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEE
Confidence 35566664 478999999999999999999984
No 178
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=59.98 E-value=12 Score=38.37 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=49.8
Q ss_pred EEEcCC-CChHHHHHHHHHHHHhCCCCeEEc-CCC-CcCc------cchh------h---------hhhcccCCCcEEEE
Q 015950 135 VGVTGS-VGKSTTKSMIALALESLGVNVFQS-YGN-WNNR------VGVA------L---------SLIGIDRAVDIAVL 190 (397)
Q Consensus 135 I~VTGT-nGKTTT~~~l~~iL~~~g~~v~~t-~g~-~n~~------~g~p------~---------~l~~~~~~~~~~Vl 190 (397)
|.=|+| .|||+++..|.+.|++.|++|... .|. +... .|.| . .+..+..+.|++|+
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~~~~~D~viV 83 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQATGRPSRNLDSFFMSEAQIQECFHRHSKGTDYSII 83 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHHhCCchhhCCcccCCHHHHHHHHHHhcccCCEEEE
Confidence 334555 799999999999999999987421 121 0000 0111 0 01123567899999
Q ss_pred eecCCCc---------chHHhhccccCCcEEEEcCCC
Q 015950 191 EMGMSGK---------GEILELARMARPEIRVVLNVG 218 (397)
Q Consensus 191 E~~~~~~---------~~~~~~~~~i~p~iaViTNi~ 218 (397)
|=.++-. +...++++.+...+.++++..
T Consensus 84 EGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 84 EGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 9542111 123455666677888888865
No 179
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=59.70 E-value=14 Score=32.02 Aligned_cols=29 Identities=38% Similarity=0.571 Sum_probs=23.5
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++.++| -.||||++..++..|.+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~ 32 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 466666 56899999999999988888774
No 180
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=59.36 E-value=50 Score=35.82 Aligned_cols=84 Identities=24% Similarity=0.237 Sum_probs=49.2
Q ss_pred EEEcCC-CChHHHHHHHHHHHHhCCCCeEEcC--C--CCcC-cc------ch-h--h-----hhhcccCCCcEEEEeecC
Q 015950 135 VGVTGS-VGKSTTKSMIALALESLGVNVFQSY--G--NWNN-RV------GV-A--L-----SLIGIDRAVDIAVLEMGM 194 (397)
Q Consensus 135 I~VTGT-nGKTTT~~~l~~iL~~~g~~v~~t~--g--~~n~-~~------g~-p--~-----~l~~~~~~~~~~VlE~~~ 194 (397)
|+=|+| .|||+++.-|.+.|++.|++|+... + .+.. .. +. . + .+..+..++|++++|-+.
T Consensus 7 I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~ 86 (684)
T PRK05632 7 LAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVLVEGLD 86 (684)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEEEeCcC
Confidence 333444 8999999999999999999875321 1 1100 00 00 0 0 011346789999999874
Q ss_pred CCcch------HHhhccccCCcEEEEcCCC
Q 015950 195 SGKGE------ILELARMARPEIRVVLNVG 218 (397)
Q Consensus 195 ~~~~~------~~~~~~~i~p~iaViTNi~ 218 (397)
..... -.++++.+...+.++++..
T Consensus 87 ~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 87 PTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred CCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 32211 1233444567777888764
No 181
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=58.85 E-value=28 Score=34.06 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=29.3
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.|||.| .|-+|||-++-.|+..|++.|++++
T Consensus 44 ~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 44 RAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred cCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 345788876 7999999999999999999999884
No 182
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=58.82 E-value=7.1 Score=34.93 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.4
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 588988 579999999999987
No 183
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=58.58 E-value=9.2 Score=35.39 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 139 GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 139 GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|-.||||+..+|+..|.+.|.+|.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~ 34 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVA 34 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEE
Confidence 778999999999999988888874
No 184
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=58.37 E-value=9 Score=34.79 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=21.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+||+|| ..||||++.++..-| |..+.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~vi 35 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNVV 35 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 34799999 689999999988755 56553
No 185
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.88 E-value=12 Score=34.21 Aligned_cols=31 Identities=29% Similarity=0.210 Sum_probs=27.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++.|-+|| ..||||-+.=|+++|++.+..+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46788999 89999999999999998887764
No 186
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=57.80 E-value=4.8 Score=37.77 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=23.0
Q ss_pred cEEEE--cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~V--TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+| -|-.|||||+.-|++.|...| +|.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 34444 577899999999999997888 874
No 187
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=57.74 E-value=30 Score=30.83 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=30.0
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEcCC
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQSYG 166 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~g 166 (397)
.+..+|=.|| -.||||.+..++..|.+.|+.+...-|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3456888888 578999999999999999998854333
No 188
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=57.48 E-value=12 Score=35.51 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=23.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
||.|.++| ..||||.+.-|.+.|+..+.++.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~ 33 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVV 33 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 46889999 89999999999999988777763
No 189
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=57.36 E-value=22 Score=36.10 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+.-+|||+|- .||||.+..|..+|+..+.++
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~v 243 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKS 243 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCce
Confidence 4568999995 689999999999996666655
No 190
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=57.19 E-value=7.8 Score=36.85 Aligned_cols=28 Identities=36% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+|||+|. +||||.+.+|..+|...+..+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~v 30 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTV 30 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEE
Confidence 5889995 589999999999996555444
No 191
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=57.17 E-value=16 Score=33.09 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCCCeE
Q 015950 141 VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 141 nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|||+++..|.+.|++.|+++.
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCceE
Confidence 7999999999999999999874
No 192
>PLN02348 phosphoribulokinase
Probab=57.06 E-value=16 Score=36.65 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHh
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALES 156 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~ 156 (397)
+..+|||+| -.||||.+..|..+|..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456899999 57999999999999954
No 193
>PRK07429 phosphoribulokinase; Provisional
Probab=56.79 E-value=11 Score=36.83 Aligned_cols=28 Identities=36% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhCC
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESLG 158 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g 158 (397)
+..+|||+| ..||||+++.|..+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 356899999 5689999999999995443
No 194
>PLN02796 D-glycerate 3-kinase
Probab=56.78 E-value=25 Score=34.62 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHh---hcCC-CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 113 NTLNSLVNMACYA---RNSR-FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 113 d~~~aL~~la~~~---~~p~-~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
....++..+.... +... .+.-+|||+|. .||||++..|..+|...+.++
T Consensus 77 ~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 77 VYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred cHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 5556666666532 1101 23457999995 589999999999996555544
No 195
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=56.49 E-value=11 Score=34.10 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=20.6
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+|||||. .||||.+.++.. .|+.++
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~vi 29 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLIV 29 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 57999995 789999998874 476654
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=54.56 E-value=12 Score=35.14 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCe
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v 161 (397)
-+++.+.++..+... ..++-++|-+|| |||+.+..+++.+ |.++
T Consensus 6 ~~~~l~~~~l~~l~~-g~~vLL~G~~Gt-GKT~lA~~la~~l---g~~~ 49 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-GYPVHLRGPAGT-GKTTLAMHVARKR---DRPV 49 (262)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEcCCCC-CHHHHHHHHHHHh---CCCE
Confidence 445555555555554 344445666665 9999999999866 5554
No 197
>PRK13768 GTPase; Provisional
Probab=54.56 E-value=17 Score=34.08 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=23.3
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|.|+| ..||||++.-++..|...|.++.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~ 34 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVA 34 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceE
Confidence 455555 67999999999999988888874
No 198
>PLN02422 dephospho-CoA kinase
Probab=54.55 E-value=12 Score=34.78 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=20.6
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++||||| -.||||++.++.. .|..+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 5799999 5799999999873 477664
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.55 E-value=23 Score=33.08 Aligned_cols=41 Identities=27% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCccHHHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHH
Q 015950 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALE 155 (397)
Q Consensus 110 ~~~d~~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~ 155 (397)
+|+|+-+-|+.++. .-++|-+-++| -.||||+...|++.|-
T Consensus 31 GNe~tv~rl~via~-----~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 31 GNEDTVERLSVIAK-----EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCHHHHHHHHHHHH-----cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 46688888877776 44577788888 4689999999999983
No 200
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=54.46 E-value=17 Score=37.04 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=25.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|.++| -.|||||+.-|+..|...|++|.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~ 127 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 45677777 46899999999999988888874
No 201
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=54.33 E-value=14 Score=35.67 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=75.6
Q ss_pred CchhcHHHHHhcCCcEEEEeccc-CC-C---------CCccEEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEcCC
Q 015950 73 DAHEFISPELYGKGCVGVIGNQV-CN-N---------WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGS 140 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~-~~-~---------~~~~~i~v~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGT 140 (397)
+-...+.+|++ +|-..|=.=+. .. . .++.++-|. .+...+ .++. ..+ ..+.++|.+-||
T Consensus 50 ~w~~~i~~Ai~-~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~DvR-----~p~~~~-~~~~g~~~--~~~~~rv~~vGT 120 (301)
T PF07755_consen 50 SWRPVILEAIE-AGLDIVSGLHDFLSDDPELAAAAKKNGVRIIDVR-----KPPKDL-PVASGRIR--EVKAKRVLTVGT 120 (301)
T ss_dssp CHHHHHHHHHH-TT-EEEE-SSS-HCCHHHHHCCHHCCT--EEETT-----S--SS------SGGG--G-SSEEEEEEES
T ss_pred HHHHHHHHHHH-cCCCEEecChhhhccCHHHHHHHHHcCCeEeecc-----CCCccc-ccccCccc--cCCCCEEEEEcc
Confidence 34578999999 99765542111 11 0 156667555 443333 3433 212 235788888886
Q ss_pred ---CChHHHHHHHHHHHHhCCCCeE--EcCCC--CcCccchhhh--------------hhcccCCCcEEEEee--cCCCc
Q 015950 141 ---VGKSTTKSMIALALESLGVNVF--QSYGN--WNNRVGVALS--------------LIGIDRAVDIAVLEM--GMSGK 197 (397)
Q Consensus 141 ---nGKTTT~~~l~~iL~~~g~~v~--~t~g~--~n~~~g~p~~--------------l~~~~~~~~~~VlE~--~~~~~ 197 (397)
.||-||+.+|...|++.|+++. +|..+ .-...|+++. +.+..++.|+.++|- |..|+
T Consensus 121 DcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~~~d~ivVEGQgsL~hP 200 (301)
T PF07755_consen 121 DCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAEEHDWIVVEGQGSLSHP 200 (301)
T ss_dssp SSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCCC-SEEEEE--S-TTST
T ss_pred CccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCcCCCEEEEeccccccCc
Confidence 6999999999999999999873 23211 1122343322 112232449999994 22233
Q ss_pred c----hHHhhccccCCcEEEE-cCCChhhhccC-----CCHHHHHHHHHHhc
Q 015950 198 G----EILELARMARPEIRVV-LNVGDSHLESL-----GSLEDVARAKGEIF 239 (397)
Q Consensus 198 ~----~~~~~~~~i~p~iaVi-TNi~~dHld~~-----gs~e~~~~~K~~i~ 239 (397)
. .+. +....+||..|+ ..-++-|++.| .++++..+.-..+.
T Consensus 201 ay~gvsl~-lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la 251 (301)
T PF07755_consen 201 AYSGVSLG-LLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALA 251 (301)
T ss_dssp TTHHCHHH-HHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCC
T ss_pred cccccchh-hhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhh
Confidence 2 111 122458997665 45667777765 45666665544444
No 202
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=54.33 E-value=12 Score=35.07 Aligned_cols=30 Identities=40% Similarity=0.495 Sum_probs=22.5
Q ss_pred EEEEc---CCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 134 LVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 134 vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+|.|. |-.|||||+.=|+-.|...|++|+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 44444 6789999999999999899999853
No 203
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=54.07 E-value=14 Score=33.33 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=21.3
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
+..+|+|+|- .||||.+..|..+|.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999995 699999999999984
No 204
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=54.02 E-value=13 Score=32.57 Aligned_cols=25 Identities=40% Similarity=0.755 Sum_probs=20.2
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+||| -.||||.+.++.. .|+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i 27 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVI 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEE
Confidence 489999 4799999999987 367664
No 205
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=53.67 E-value=13 Score=33.81 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=18.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH-hCCCCe
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALE-SLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~-~~g~~v 161 (397)
.-|+|-||| |||+|+..|-+=+. ..+.++
T Consensus 26 ~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 26 IAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 446666775 89988866655553 455554
No 206
>PRK10818 cell division inhibitor MinD; Provisional
Probab=53.66 E-value=15 Score=34.49 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=24.7
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|+ |=.||||++.-|+..|...|++|.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vl 35 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 455554 567899999999999988898884
No 207
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=53.66 E-value=37 Score=33.56 Aligned_cols=49 Identities=24% Similarity=0.118 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcC-CC-ChHHHHHHHHHHHHhCCCCe
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTG-SV-GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTG-Tn-GKTTT~~~l~~iL~~~g~~v 161 (397)
|...+|.++...+..-+...|.+-|-| |+ ||||.+.+|-.-.-+.|++.
T Consensus 84 NlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 84 NLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred hHHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 788888888774432244455555555 55 99999988766655778775
No 208
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=53.55 E-value=12 Score=35.36 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=23.8
Q ss_pred cEEEEc--CCCChHHHHHHHHHHHHh-CCCCeE
Q 015950 133 VLVGVT--GSVGKSTTKSMIALALES-LGVNVF 162 (397)
Q Consensus 133 ~vI~VT--GTnGKTTT~~~l~~iL~~-~g~~v~ 162 (397)
++|+|+ |-.|||||+.-|+..|.. .|++|.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvL 35 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVF 35 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence 456665 567899999999999965 599984
No 209
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=53.50 E-value=12 Score=33.36 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=21.3
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+|+||| -.||||.+.++.. + |+.++
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g~~~i 30 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---GAPVI 30 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 35799999 5799999999887 4 66654
No 210
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=52.86 E-value=60 Score=30.25 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC--CC-----eeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCe
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPV--QM-----RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNV 387 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~--~G-----R~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r 387 (397)
+..|+..|...++|.+.|.+++....+. .. ++|.+. ++|+-||+++.-.|+.-..+-++.+-.-.+++
T Consensus 49 L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~g-P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~ 123 (238)
T TIGR01033 49 LRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYA-PGGVAIIVECLTDNKNRTASEVRSAFNKNGGS 123 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCceEEEEEEecCCHHhHHHHHHHHHHHcCCe
Confidence 5567888889999999999999987652 22 333333 47899999999999988888777665443333
No 211
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=52.36 E-value=17 Score=28.91 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=32.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHhC-CCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecC
Q 015950 135 VGVTGSVGKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL~~~-g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~ 194 (397)
++--|-.||||++.-|+..|.+. |+++..---+ . ....|+.|+-++.
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d--~-----------~~~~D~IIiDtpp 52 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD--L-----------QFGDDYVVVDLGR 52 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC--C-----------CCCCCEEEEeCCC
Confidence 34456789999999999999877 8887521111 0 1122899999873
No 212
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=52.23 E-value=15 Score=32.90 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+||| -.||||++.++...+ |+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i 30 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL 30 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe
Confidence 4799999 579999999988765 66654
No 213
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=51.89 E-value=18 Score=40.01 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 111 ~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
|.|=++|+.+.-.. ..-.-+.|.-|| |||||...|-.+|-..|.+|.-
T Consensus 671 N~dQr~A~~k~L~a----edy~LI~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 671 NNDQRQALLKALAA----EDYALILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred CHHHHHHHHHHHhc----cchheeecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 44666666553331 112347788887 8999999888888899999853
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=51.83 E-value=30 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
.+..+|.++| -.||||.+..|+.-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3456888888 4689999999999996555444
No 215
>CHL00175 minD septum-site determining protein; Validated
Probab=51.80 E-value=15 Score=34.63 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.4
Q ss_pred CcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.++|+|++ -.||||++.-|+..|.+.|++|.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 46888876 57899999999999988898884
No 216
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=51.12 E-value=15 Score=35.01 Aligned_cols=30 Identities=47% Similarity=0.471 Sum_probs=25.7
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+|.|+ |-.|||||+..|+..|.+.|.+++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 467775 789999999999999987888875
No 217
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.06 E-value=1e+02 Score=31.37 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHH-hCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALE-SLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~-~~g~~v~ 162 (397)
..+|.++| -.|||||+.-|+..|. ..|.+|.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~ 132 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVL 132 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 34666666 4689999999998885 4677773
No 218
>PRK14709 hypothetical protein; Provisional
Probab=51.05 E-value=29 Score=35.74 Aligned_cols=40 Identities=25% Similarity=0.192 Sum_probs=25.6
Q ss_pred cHHHHHHHHHH--HhhcCCCCC-cEEEE--cCCCChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMAC--YARNSRFSG-VLVGV--TGSVGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~--~~~~p~~~~-~vI~V--TGTnGKTTT~~~l~~iL 154 (397)
+..+.|+++.. +.+. .+. ..+-+ +|.|||||...+|..+|
T Consensus 185 e~~~~lq~~lGy~L~g~--~~~q~~~~l~G~G~NGKSt~~~~i~~ll 229 (469)
T PRK14709 185 ELIRFLQQWCGYCLTGD--TREHALVFVFGGGGNGKSVFLNVLAGIL 229 (469)
T ss_pred HHHHHHHHHhhHhhcCC--CccceEEEEECCCCCcHHHHHHHHHHHH
Confidence 45666666444 2332 222 22222 67899999999999999
No 219
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=50.84 E-value=11 Score=33.34 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.4
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
++|-++| |.||||++..|...|
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~ 25 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERL 25 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhC
Confidence 4677777 799999999999988
No 220
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=50.51 E-value=33 Score=32.94 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=17.0
Q ss_pred EEEcCCCChHHHHHHHHHHH
Q 015950 135 VGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL 154 (397)
+| .|.|||||...+|..++
T Consensus 82 ~G-~g~nGKStl~~~l~~l~ 100 (304)
T TIGR01613 82 YG-NGGNGKSTFQNLLSNLL 100 (304)
T ss_pred EC-CCCCcHHHHHHHHHHHh
Confidence 45 58999999999999999
No 221
>PRK12377 putative replication protein; Provisional
Probab=50.29 E-value=34 Score=32.01 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=22.9
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.++| -.|||..+..|+..|...|++|.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 3455555 34999999999998877888774
No 222
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=50.06 E-value=22 Score=35.78 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=20.5
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+-.+.|+|+| +.||||.+..|+..+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3467899998 789999998888765
No 223
>PRK06547 hypothetical protein; Provisional
Probab=49.30 E-value=31 Score=30.28 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.3
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
....+|+|+|. .||||++..|++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34668999885 57999999998876
No 224
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=49.24 E-value=1e+02 Score=26.03 Aligned_cols=70 Identities=13% Similarity=-0.030 Sum_probs=43.7
Q ss_pred ccCCCcEEEEeecCCCcch---HHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhH
Q 015950 181 IDRAVDIAVLEMGMSGKGE---ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLV 257 (397)
Q Consensus 181 ~~~~~~~~VlE~~~~~~~~---~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~ 257 (397)
...+.++.++=-++.++.. -.-++-+.+|.|+|+|-+.. .+.+++...|.-|.+. -...+.+++.-|+..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DL------aed~dI~~~~~~L~ea-Ga~~IF~~s~~d~~g 133 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADL------AEDADISLVKRWLREA-GAEPIFETSAVDNQG 133 (148)
T ss_pred HhhccceeeeeecccCccccCCcccccccccceEEEEecccc------cchHhHHHHHHHHHHc-CCcceEEEeccCccc
Confidence 3466666666555554410 01112245889999999863 3468888888888764 234577888777654
No 225
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=49.17 E-value=22 Score=31.46 Aligned_cols=48 Identities=27% Similarity=0.354 Sum_probs=31.1
Q ss_pred cCCCCCCCeeeEEeecCCeEEEEecCCC-----CHHHHHHHHHHHhccCC----CeEEEEE
Q 015950 341 SNFSPVQMRSELLVSRSGIKIVNDAYNA-----NPISTRAAIDLLKDIAC----NVVQCKW 392 (397)
Q Consensus 341 ~~~~~~~GR~e~i~~~~~~~vi~Dsyah-----np~s~~~~l~~l~~~~~----~rv~~v~ 392 (397)
.+++|++||++++-..+.. .| +++ .-.|++.||+.|.+-+- .+|+++|
T Consensus 61 ~k~RPL~gRiNiVLSR~~~---~~-~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIG 117 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLK---ED-FAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIG 117 (190)
T ss_pred cccCCCCCceEEEEecccC---cC-cCCccCEEEeccHHHHHHhhcCCccccceeEEEEEc
Confidence 4689999999987542211 11 122 23688999999988642 5677665
No 226
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.93 E-value=20 Score=30.86 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 139 GSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 139 GTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+-.||||++.-|...|++.|++|+.
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEE
Confidence 3479999999999999999998853
No 227
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=48.70 E-value=24 Score=36.42 Aligned_cols=33 Identities=36% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCCcEEEEcC------CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|.||. --|||||+-=|++.|.+.|.++.
T Consensus 36 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 36 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 3468999999 45999999999999998898864
No 228
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=48.64 E-value=24 Score=35.03 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=26.5
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++..+|+|+| -.||||....|...|+.. ++|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~ 36 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVG 36 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEE
Confidence 4567899999 569999999999999776 7764
No 229
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=48.28 E-value=16 Score=31.87 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=16.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 015950 134 LVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL 154 (397)
++||+|| ||||+..+|.+-|
T Consensus 17 vmGvsGs-GKSTigk~L~~~l 36 (191)
T KOG3354|consen 17 VMGVSGS-GKSTIGKALSEEL 36 (191)
T ss_pred EEecCCC-ChhhHHHHHHHHh
Confidence 4566664 8999999999999
No 230
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=48.16 E-value=16 Score=32.99 Aligned_cols=26 Identities=50% Similarity=0.777 Sum_probs=20.3
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+|||||. .||||.+.++.. .|+.+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~~v~ 33 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGCELF 33 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 47999995 789999988875 466664
No 231
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=48.07 E-value=11 Score=32.56 Aligned_cols=18 Identities=61% Similarity=0.759 Sum_probs=15.4
Q ss_pred EEcCCCChHHHHHHHHHHH
Q 015950 136 GVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 136 ~VTGTnGKTTT~~~l~~iL 154 (397)
||.|| ||||+..+|++-|
T Consensus 2 GVsG~-GKStvg~~lA~~l 19 (161)
T COG3265 2 GVSGS-GKSTVGSALAERL 19 (161)
T ss_pred CCCcc-CHHHHHHHHHHHc
Confidence 56664 9999999999999
No 232
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=47.52 E-value=45 Score=28.07 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+|.+.|. .||||.+..+...|
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3568999995 68999998888887
No 233
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=47.42 E-value=16 Score=29.30 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEEcCC--CChHHHHHHHHHHH
Q 015950 135 VGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 135 I~VTGT--nGKTTT~~~l~~iL 154 (397)
|+|+|. .||||++..|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 445552 59999999999987
No 234
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=47.17 E-value=17 Score=36.62 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.6
Q ss_pred cEEEEcC--CCChHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIAL 152 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~ 152 (397)
..||||| -.||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999 6899999999876
No 235
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=47.04 E-value=14 Score=33.16 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=15.2
Q ss_pred EEEEcCC--CChHHHHHHHHH
Q 015950 134 LVGVTGS--VGKSTTKSMIAL 152 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~ 152 (397)
+|||||. .||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 4899995 579999887764
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.77 E-value=27 Score=36.42 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
++.++|..++.+ .|.....+.-+|| -.|||||...|+..| |+.+
T Consensus 93 eVk~WL~~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~ 138 (634)
T KOG1970|consen 93 EVKQWLKQVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQL 138 (634)
T ss_pred HHHHHHHHHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhh---Ccee
Confidence 788888855433 3467778999999 578999999999998 6665
No 237
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=46.22 E-value=11 Score=38.48 Aligned_cols=72 Identities=26% Similarity=0.333 Sum_probs=41.8
Q ss_pred CchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHH-----HHH----HhhcCCC-CCcEEEEcCCC-
Q 015950 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVN-----MAC----YARNSRF-SGVLVGVTGSV- 141 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~-----la~----~~~~p~~-~~~vI~VTGTn- 141 (397)
+|..+|.+.+- -|+...+-..+.. -+.+|-.| ..|.. .+. .|+-|.. +.+|+||-|+|
T Consensus 42 ~gkpvIsE~lC-iGCGICvkkCPF~--AI~IvnLP--------~eLe~e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NG 110 (591)
T COG1245 42 TGKPVISEELC-IGCGICVKKCPFD--AISIVNLP--------EELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNG 110 (591)
T ss_pred CCCceeEhhhh-ccchhhhccCCcc--eEEEecCc--------hhhcccceeeccCCceEEecCCCCCCCcEEEEEcCCC
Confidence 56778888888 7854433322221 23444333 22221 111 2333332 35799999999
Q ss_pred -ChHHHHHHHHHHHH
Q 015950 142 -GKSTTKSMIALALE 155 (397)
Q Consensus 142 -GKTTT~~~l~~iL~ 155 (397)
||||+..+|+.-|.
T Consensus 111 iGKsTalkILaGel~ 125 (591)
T COG1245 111 IGKSTALKILAGELK 125 (591)
T ss_pred ccHHHHHHHHhCccc
Confidence 59999888887773
No 238
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=45.82 E-value=30 Score=36.15 Aligned_cols=33 Identities=36% Similarity=0.390 Sum_probs=28.3
Q ss_pred CCCcEEEEcC------CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|.||. --|||||+-=|++.|.+.|.+++
T Consensus 52 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 52 PKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 3578999999 44899999999999999998864
No 239
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=45.79 E-value=16 Score=32.31 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+|||+ .||||++.+++... |+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i 28 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVI 28 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEE
Confidence 4899995 78999999888754 45554
No 240
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.27 E-value=1e+02 Score=31.98 Aligned_cols=20 Identities=50% Similarity=0.833 Sum_probs=15.4
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 015950 134 LVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL 154 (397)
+.|.-|| ||||++..++..|
T Consensus 40 f~Gp~G~-GKTT~ArilAk~L 59 (491)
T PRK14964 40 LVGASGV-GKTTCARIISLCL 59 (491)
T ss_pred EECCCCc-cHHHHHHHHHHHH
Confidence 3444444 7999999999988
No 241
>PRK06762 hypothetical protein; Provisional
Probab=45.07 E-value=23 Score=30.37 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
++|.|+| -.||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999 679999999999888
No 242
>PRK01184 hypothetical protein; Provisional
Probab=44.77 E-value=30 Score=30.26 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=20.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+++|++|| -.||||.+. +++..|+.+..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~----~~~~~g~~~i~ 30 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK----IAREMGIPVVV 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHH----HHHHcCCcEEE
Confidence 45899999 578999765 46666777653
No 243
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.77 E-value=1.8e+02 Score=29.29 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=55.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHh----CCCCeE-EcCCCCcCccchhhhhhcc--cCCCcEEEEeecCCCcchHHh
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALES----LGVNVF-QSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILE 202 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~----~g~~v~-~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~~~~~~~~~~~ 202 (397)
..+|.+.|. .|||||+.-|+..|.. .|.+|. .+..+| +.+-...+... .-+.++.+.+.. .++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~--R~aa~eQL~~~a~~lgvpv~~~~~~----~~l~~ 247 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY--RIGAKKQIQTYGDIMGIPVKAIESF----KDLKE 247 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc--cHHHHHHHHHHhhcCCcceEeeCcH----HHHHH
Confidence 345555553 4899999999988853 355663 233333 22221112111 123444444431 12221
Q ss_pred -hccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCC-C-CcEEEEcCCC
Q 015950 203 -LARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK-L-GDVCVLNADD 254 (397)
Q Consensus 203 -~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~-~-~~~~vln~Dd 254 (397)
+...-..|+.+|=..|+.|- +...+.+. .++++... + .-.+|+++..
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~----~~~~l~el-~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPK----DFMKLAEM-KELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCcc----CHHHHHHH-HHHHHhcCCCCeEEEEEcCCC
Confidence 22234678999988887763 33333333 23333222 2 4567777653
No 244
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=44.52 E-value=24 Score=30.05 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=22.4
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|++.| -.||||+...+...|...|.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 55555 46899999999999988888763
No 245
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=44.01 E-value=31 Score=38.15 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCC---ChHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~v 161 (397)
.+.+.+.||||| |||-++..|.+.+++.|.++
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 457889999997 99999999999998888765
No 246
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=43.89 E-value=29 Score=35.79 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=21.8
Q ss_pred cCC-CChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGS-VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGT-nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|+| .|||.++..|...|++.|++|.
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~G~~v~ 31 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARRGYRVA 31 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 444 8999999999999999999874
No 247
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=43.85 E-value=85 Score=24.75 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=43.5
Q ss_pred HHHHHhCCeecccCC-----CceEEee-------CCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC
Q 015950 31 EIAESVNGKILKWGP-----PGIICTD-------TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98 (397)
Q Consensus 31 ~l~~~~~~~~~~~~~-----i~~i~~d-------Sr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~ 98 (397)
+|++.++|+++...+ +..+.+= -..+++ |++.+. .|.| .+-+..|++ .|++++|.......
T Consensus 1 ~I~~~L~~~~l~g~~~~~~~~~~v~v~a~~~~~~~~~~~~--~~lvIt-~gdR---~di~~~a~~-~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 1 DIAKTLDGEVLNGGEELDRRVGKVVVGAMSLSDFLEYLKP--GDLVIT-PGDR---EDIQLAAIE-AGIACIILTGGLEP 73 (105)
T ss_dssp HHHHHTT-EEEE--TTS--EESEEEE-SS-HHHHHHCHHT--TEEEEE-ETT----HHHHHHHCC-TTECEEEEETT---
T ss_pred ChHHhcCCEEEECCcccceEEeeEEEEECCHHHHHhhcCC--CeEEEE-eCCc---HHHHHHHHH-hCCCEEEEeCCCCC
Confidence 578888988654321 3333222 234567 898875 5666 556677888 99888777653321
Q ss_pred ----------CCccEEEEcCCCCccHHHHHHHH
Q 015950 99 ----------WDKGFVQVEGNGNVNTLNSLVNM 121 (397)
Q Consensus 99 ----------~~~~~i~v~~~~~~d~~~aL~~l 121 (397)
.++|++.++ .|+-++...+
T Consensus 74 ~~~v~~la~~~~i~vi~t~----~dtf~ta~~i 102 (105)
T PF07085_consen 74 SEEVLELAKELGIPVISTP----YDTFETARLI 102 (105)
T ss_dssp -HHHHHHHHHHT-EEEE-S----S-HHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEEC----CCHHHHHHHH
Confidence 167888777 2555554443
No 248
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=43.19 E-value=28 Score=31.12 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCeee--EEeecCCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 015950 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSE--LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385 (397)
Q Consensus 320 laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e--~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~ 385 (397)
..|.+++..+|+|.--+++.-..+- .+++. .+..++.+.|+|| --.+-.++.++++.+++...
T Consensus 86 plA~~vA~~l~~p~v~vRK~~k~~g--~~~~~~g~~~~g~rVlIVDD-VitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 86 PLATAVSLETGLPLLIVRKSVKDYG--TGSRFVGDLKPEDRIVMLED-VTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred HHHHHHHHHhCCCEEEEecCCCccC--CCceEEccCCCcCEEEEEEe-ccCCChHHHHHHHHHHHCCC
Confidence 3556666678877654444434432 23332 1233567899999 88999999999999998653
No 249
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=43.08 E-value=25 Score=32.16 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.++|+|.|+ .||||.+++|++=|
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 468999995 79999999999988
No 250
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=42.86 E-value=29 Score=32.81 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=27.4
Q ss_pred CCcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++|+||. -.|||||+..|+..|...|++|+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVl 90 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVL 90 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 466788874 56899999999999999999985
No 251
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=42.82 E-value=22 Score=32.48 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
...+.|+-|-| ||||+-+||+.+|.-...++
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v 59 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCceE
Confidence 46799999977 69999999999996444443
No 252
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=42.82 E-value=21 Score=33.67 Aligned_cols=30 Identities=37% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCCCcEEEEcCCCChHHHH-HHHHHHHHhCCC
Q 015950 129 RFSGVLVGVTGSVGKSTTK-SMIALALESLGV 159 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~-~~l~~iL~~~g~ 159 (397)
.....|.|.+|| |||||. +-+..+|...+.
T Consensus 13 ~~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~ 43 (315)
T PF00580_consen 13 EGPLLVNAGAGS-GKTTTLLERIAYLLYEGGV 43 (315)
T ss_dssp SSEEEEEE-TTS-SHHHHHHHHHHHHHHTSSS
T ss_pred CCCEEEEeCCCC-CchHHHHHHHHHhhccccC
Confidence 444667888886 999976 556677744433
No 253
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=42.51 E-value=47 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHh-CCCCe
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALES-LGVNV 161 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~~v 161 (397)
.+..+.|.++|.....+..+|.+|| -.||||.+..|+..|.. .|.++
T Consensus 375 peV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~ 424 (568)
T PRK05537 375 PEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPV 424 (568)
T ss_pred HHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceE
Confidence 3555567776654244456899999 68999999999999954 44433
No 254
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=42.47 E-value=36 Score=35.61 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCC------ChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.+.|-||+.+ |||||+-=|.+.|.+.|+++.
T Consensus 61 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 61 PDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 357899999975 999999999999999998874
No 255
>PRK06761 hypothetical protein; Provisional
Probab=42.33 E-value=21 Score=34.22 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=24.9
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|.|+| -.||||+...++.-|...|+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 5788888 67999999999999977677664
No 256
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=27 Score=31.47 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.-.+-|||-| ||||.-++|+-+++.....|.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~ 60 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence 4578999987 599999999999987666664
No 257
>PRK12378 hypothetical protein; Provisional
Probab=41.95 E-value=1.7e+02 Score=27.26 Aligned_cols=69 Identities=10% Similarity=-0.039 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCC-eeeEEe----ecCCeEEEEecCCCCHHHHHHHHHHHhccCCCe
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQM-RSELLV----SRSGIKIVNDAYNANPISTRAAIDLLKDIACNV 387 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~~G-R~e~i~----~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r 387 (397)
+..|+..|...++|.+.|.+++..-.+..+ -++.+. .++|+.||+++.-.|..-..+-++.+-.-.+++
T Consensus 47 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~ 120 (235)
T PRK12378 47 LRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGN 120 (235)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHHHHHhhcCCe
Confidence 456778888999999999999988664222 233222 147899999999888887777776654433333
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=41.89 E-value=33 Score=41.12 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCC
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~ 159 (397)
.....|.+|+.-.+. ..+.-.||=||| ||||+...|+-+| ....
T Consensus 449 ~sl~lleql~~~Iq~-nep~LLVGeTGt-GKTT~IQ~La~~l-~~kl 492 (4600)
T COG5271 449 CSLWLLEQLLWNIQN-NEPTLLVGETGT-GKTTMIQYLALKL-HFKL 492 (4600)
T ss_pred hHHHHHHHHHHHhcc-CCceEEEecCCC-chhhHHHHHHHHh-hhhh
Confidence 445666677764444 445567999998 9999999999999 4433
No 259
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=41.72 E-value=51 Score=29.17 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEE
Q 015950 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCK 391 (397)
Q Consensus 357 ~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v 391 (397)
..+.|+|| -..+-..++.+++.+++..++.+.|+
T Consensus 142 K~cvIVDD-vittG~Ti~E~Ie~lke~g~kpv~v~ 175 (203)
T COG0856 142 KRCVIVDD-VITTGSTIKETIEQLKEEGGKPVLVV 175 (203)
T ss_pred ceEEEEec-ccccChhHHHHHHHHHHcCCCcEEEE
Confidence 45778888 78999999999999999876555443
No 260
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.66 E-value=41 Score=28.55 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=21.5
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|.|+| -.||||.+..|...|...+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 55666 56999999999999976666553
No 261
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=41.58 E-value=36 Score=29.90 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=21.1
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|.|.| -.||||++.+|+..| |++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 577777 579999999999988 67654
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=41.47 E-value=37 Score=30.34 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=22.2
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+++.|+|- .||||+...+...++..|+++..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 35555554 46999999999999998988753
No 263
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=41.25 E-value=27 Score=31.21 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=18.4
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
.+++|||.| ||||...+|....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 589999987 7999999998443
No 264
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=41.15 E-value=26 Score=33.07 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=24.6
Q ss_pred cEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~ 35 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVT 35 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeee
Confidence 5677888 67999999999999999999983
No 265
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.82 E-value=53 Score=35.97 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCCCcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
....++|+||+ ..||||++.-|+..|...|.+|.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 44567888886 46899999999999988888885
No 266
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=40.74 E-value=21 Score=33.18 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHhCCCCeE
Q 015950 141 VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 141 nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.||||-+.-+.+.+...|.++.
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~ 28 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVY 28 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EE
T ss_pred CCHHHHHHHHHHHHHhccCCce
Confidence 5999999999999988887763
No 267
>PRK13976 thymidylate kinase; Provisional
Probab=40.68 E-value=44 Score=30.35 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=22.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhC-C-CCeEEc
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESL-G-VNVFQS 164 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~-g-~~v~~t 164 (397)
.|+|-| -.||||.+.+|+..|+.. | .++..+
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 455555 469999999999999775 5 466544
No 268
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=40.63 E-value=53 Score=28.52 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=33.1
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhh
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL 176 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~ 176 (397)
.+.-+|=||| -.||+|.+-.|.+.|-+.|.-+ +.+..-|-+.|+..
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~-Y~LDGDNvRhGLN~ 76 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLT-YILDGDNVRHGLNK 76 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceE-EEecCccccccccc
Confidence 4567899999 5789999999999997777544 44444455555543
No 269
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=40.63 E-value=86 Score=29.11 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC--C-----CeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeE
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPV--Q-----MRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVV 388 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~--~-----GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv 388 (397)
+..|+..|...++|.+.|.++|...... . -++|.+. ++|+.+|+++.-.|+.-...-++.+-...++++
T Consensus 45 L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~g-P~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l 120 (234)
T PF01709_consen 45 LRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYG-PGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSL 120 (234)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEE-TTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEc-CCCcEEEEEEeCCCHhHHHHHHHHHHHHcCcee
Confidence 5567888889999999999999887752 2 2344333 489999999998898888777776654444443
No 270
>PRK04040 adenylate kinase; Provisional
Probab=40.13 E-value=28 Score=30.97 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=22.4
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+++|+|||. .||||.+..+.+-| ..++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l-~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL-KEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh-ccCCeE
Confidence 457899985 68999999999988 334544
No 271
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=40.12 E-value=34 Score=31.75 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=21.9
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|.++| ..||||.+..|+.-|...++++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~ 31 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVI 31 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 44555 57999999999999977677653
No 272
>PRK00131 aroK shikimate kinase; Reviewed
Probab=40.01 E-value=34 Score=29.19 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.6
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+.|.++| ..||||++..|++.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45778887 679999999999998
No 273
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=39.89 E-value=34 Score=35.76 Aligned_cols=35 Identities=37% Similarity=0.420 Sum_probs=26.4
Q ss_pred CCCCcEEEEcCCC------ChHHHHHHHHHHHHhCCCCeEE
Q 015950 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 129 ~~~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~v~~ 163 (397)
..+.+.|-||+.+ |||||+-=|.+.|...|+++..
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 4467899999876 9999999999999999998743
No 274
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.83 E-value=2.9e+02 Score=29.16 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhC--CCCe
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESL--GVNV 161 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~--g~~v 161 (397)
...+|+++| -.|||||...|+..+... +.++
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkV 383 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDV 383 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCce
Confidence 356888887 568999998888776443 3455
No 275
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=39.78 E-value=23 Score=36.84 Aligned_cols=25 Identities=40% Similarity=0.311 Sum_probs=20.9
Q ss_pred CCCCcEEEEcC--CCChHHHHHHHHHH
Q 015950 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (397)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~~l~~i 153 (397)
+..+|.|.|.| |.||||+.+||++.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHh
Confidence 34578888888 99999999999874
No 276
>PRK08181 transposase; Validated
Probab=39.61 E-value=63 Score=30.64 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 114 ~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
...+|..+-.|... ..++-++|=+|| |||-.+..|..-+...|++|..
T Consensus 92 ~~~~L~~~~~~~~~-~~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 92 QVMAIAAGDSWLAK-GANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred HHHHHHHHHHHHhc-CceEEEEecCCC-cHHHHHHHHHHHHHHcCCceee
Confidence 33444433234443 455556677776 9999999888777678888753
No 277
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=39.42 E-value=35 Score=31.66 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCCcEEEEcCCCC--hHHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGSVG--KSTTKSMIALALE 155 (397)
Q Consensus 130 ~~~~vI~VTGTnG--KTTT~~~l~~iL~ 155 (397)
++..+.+|.|-|| |||+...|..+|.
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999875 9999999999993
No 278
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=39.15 E-value=37 Score=28.40 Aligned_cols=51 Identities=29% Similarity=0.492 Sum_probs=34.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~ 194 (397)
+.+..|-.||||++..++..|...|.++..--... ..+ .+ ..|+.|+.++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~----~~~----~~--~yd~VIiD~p~ 54 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL----GLA----NL--DYDYIIIDTGA 54 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC----CCC----CC--CCCEEEEECCC
Confidence 45567889999999999999988888774321111 000 00 17899999974
No 279
>PRK06526 transposase; Provisional
Probab=38.95 E-value=46 Score=31.25 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=27.0
Q ss_pred HHHHHHH--HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 117 SLVNMAC--YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 117 aL~~la~--~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+..|+. |... ..++-++|=+| .|||.++.-|..-+...|++|.
T Consensus 85 ~~~~l~~~~fi~~-~~nlll~Gp~G-tGKThLa~al~~~a~~~g~~v~ 130 (254)
T PRK06526 85 TIAHLGTLDFVTG-KENVVFLGPPG-TGKTHLAIGLGIRACQAGHRVL 130 (254)
T ss_pred HHHHHhcCchhhc-CceEEEEeCCC-CchHHHHHHHHHHHHHCCCchh
Confidence 4445555 4443 33333444343 5899999988777767888774
No 280
>PRK00300 gmk guanylate kinase; Provisional
Probab=38.95 E-value=28 Score=30.97 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.8
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+|+|+|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999975 89999999998873
No 281
>PRK06217 hypothetical protein; Validated
Probab=38.90 E-value=29 Score=30.46 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=17.6
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.|.|+| -.||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 477777 468999999999988
No 282
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.84 E-value=35 Score=29.68 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.5
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+.++|.|.|. .||||.+..|+.-+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888884 68999999998766
No 283
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=38.60 E-value=1.6e+02 Score=29.65 Aligned_cols=50 Identities=26% Similarity=0.160 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHhhcC---CCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 113 NTLNSLVNMACYARNS---RFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~~~~p---~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|-..++..+..-+..+ .....+|.|-| -.||||.+.+|+.-|-+.|+++.
T Consensus 51 d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ 105 (398)
T COG1341 51 DRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVA 105 (398)
T ss_pred HhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEE
Confidence 5556666666522111 22356777777 57999999999998878898874
No 284
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=38.50 E-value=46 Score=34.85 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=28.3
Q ss_pred CCCcEEEEcC------CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|.||. .-|||||+.=|++.|.+.|.++.
T Consensus 53 ~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 53 KDGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3568999999 34899999999999999998874
No 285
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=38.43 E-value=37 Score=31.67 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=22.7
Q ss_pred EcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 137 VTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 137 VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
--|-.||||++..+++.|...|.+|.
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl 35 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPL 35 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 44789999999999999988888885
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=38.12 E-value=24 Score=33.80 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEcCC--CChHHHHHHHHHHHHhCCC
Q 015950 135 VGVTGS--VGKSTTKSMIALALESLGV 159 (397)
Q Consensus 135 I~VTGT--nGKTTT~~~l~~iL~~~g~ 159 (397)
+-++|- .||||++..+++.+...|+
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 444552 4899999999999976655
No 287
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=37.93 E-value=67 Score=33.07 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=26.4
Q ss_pred cEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|-||| |-||..|+.-|..+|++.|++|.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt 35 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 35 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEE
Confidence 4677777 78999999999999999999983
No 288
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=37.86 E-value=38 Score=29.48 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.5
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.++|.++| ..||||.+..|...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35788888 689999999998887
No 289
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=37.74 E-value=37 Score=32.80 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=21.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-|-.||||++..++--+...|.+|.
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtL 33 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTL 33 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCee
Confidence 4689999999999999999999984
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=37.28 E-value=45 Score=31.79 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=23.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhC-C-CCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESL-G-VNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~-g-~~v~ 162 (397)
..+|++.|. .|||||...|+..+... | .+|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~ 228 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVA 228 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEE
Confidence 458888884 58999999999888654 4 6663
No 291
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=37.27 E-value=32 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=18.9
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
.+|.|+|. .||||+...|...|.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46888884 589999999988873
No 292
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=37.19 E-value=36 Score=38.45 Aligned_cols=29 Identities=34% Similarity=0.289 Sum_probs=23.2
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++.|||- .||||+...+..++++.|++|.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~ 394 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVR 394 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4556663 4899999999999988899875
No 293
>PRK06835 DNA replication protein DnaC; Validated
Probab=37.00 E-value=66 Score=31.50 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=22.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+-+.|=||| |||..+..|+.-|-..|+.|..
T Consensus 186 Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 186 LLFYGNTGT-GKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHHHCCCeEEE
Confidence 334455555 9999999988877677887753
No 294
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=36.89 E-value=44 Score=31.62 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=20.8
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCe
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v 161 (397)
++|+|+ |-.||||++.-+..++-+.+.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCe
Confidence 567777 89999999999944443554444
No 295
>PF12846 AAA_10: AAA-like domain
Probab=36.67 E-value=33 Score=32.07 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-++|-||| ||||+...+..-+...|..+.
T Consensus 5 ~i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 5 LILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EEECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 35566664 899988766544447776664
No 296
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.52 E-value=2.8e+02 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.3
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++.| ..||||+...|+..+...+.+++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~ 107 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 46888887 56899999999998866666653
No 297
>PRK00110 hypothetical protein; Validated
Probab=36.51 E-value=1.6e+02 Score=27.65 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC--CC-----eeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhc
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPV--QM-----RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD 382 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~--~G-----R~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~ 382 (397)
+..|+..|...++|.+.|.+++....+- .. ++|-+. ++|+.+|+++.-.|..-..+-++.+=.
T Consensus 49 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~g-P~GvaiiVe~lTDN~nRt~~~vR~~f~ 118 (245)
T PRK00110 49 LRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGYG-PGGVAIIVEALTDNRNRTAAEVRHAFS 118 (245)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCCeEEEEEEecCCHHHHHHHHHHHHH
Confidence 5567888889999999999999987652 22 233222 478999999888888777666665543
No 298
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.23 E-value=25 Score=33.42 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=34.2
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHH
Q 015950 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 101 ~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL 154 (397)
..++..+ +..+-+.++.+..+.|.-..-.||+.| .||.|.+.+.+++.
T Consensus 8 m~lVlf~-----~ai~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 8 MNLVLFD-----EAIEHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC 55 (268)
T ss_dssp ------H-----HHHHHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT
T ss_pred cceeeHH-----HHHHHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh
Confidence 3456667 777777777776777676677899988 89999999999887
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=36.15 E-value=27 Score=30.21 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=20.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999986 89999999998874
No 300
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=35.86 E-value=43 Score=31.78 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCC-----------CCCCCeeeEE-------eecCCeEEEEecCCCCHHHHHHHHHHH
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNF-----------SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLL 380 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~-----------~~~~GR~e~i-------~~~~~~~vi~Dsyahnp~s~~~~l~~l 380 (397)
+..|.++|..||++.--+.+. .+. .+..+|.|.+ ..+..+.+||| .-.+-.++.++++.+
T Consensus 140 IpLA~avA~~L~vp~vivRK~-~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll 217 (268)
T TIGR01743 140 IPLAYAVASVLNVPLVIVRKD-SKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDD-FMKAGGTINGMINLL 217 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEEC-CCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEee-ecccCHHHHHHHHHH
Confidence 557788888898875433332 111 1223444432 23567899999 889999999999999
Q ss_pred hccCCC
Q 015950 381 KDIACN 386 (397)
Q Consensus 381 ~~~~~~ 386 (397)
++....
T Consensus 218 ~e~Ga~ 223 (268)
T TIGR01743 218 DEFDAE 223 (268)
T ss_pred HHCCCE
Confidence 987543
No 301
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=35.75 E-value=58 Score=28.49 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=25.1
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 015950 356 RSGIKIVNDAYNANPISTRAAIDLLKDIAC 385 (397)
Q Consensus 356 ~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~ 385 (397)
++.+.+||| -..|-.++.++.+.+++...
T Consensus 108 g~~VlIVDD-vi~TG~Tl~~a~~~l~~~Ga 136 (173)
T TIGR00336 108 GDKVVVVED-VITTGTSILEAVEIIQAAGG 136 (173)
T ss_pred CCEEEEEec-cccChHHHHHHHHHHHHcCC
Confidence 467899999 78999999999999998753
No 302
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=35.59 E-value=43 Score=34.12 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEcCC---CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS---VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT---nGKTTT~~~l~~iL~~~g~~v 161 (397)
-|-|||| .|||+++-.|.+.|++.|.+|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v 33 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAV 33 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 3555554 699999999999999999876
No 303
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=35.31 E-value=31 Score=28.25 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|...+.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 4689999988 79998888877774
No 304
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.51 E-value=29 Score=35.43 Aligned_cols=30 Identities=40% Similarity=0.726 Sum_probs=26.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.-|-|-||| |||-|-..|+.-|...|.+|.
T Consensus 22 GLIaGATGT-GKTvTLqvlAE~fS~~GVPVf 51 (502)
T PF05872_consen 22 GLIAGATGT-GKTVTLQVLAEQFSDAGVPVF 51 (502)
T ss_pred ceeeccCCC-CceehHHHHHHHhhhcCCcEE
Confidence 446788887 899999999999999999984
No 305
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=34.39 E-value=54 Score=28.94 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeE-EeecCCeEEEEecCCCCHHHHHHHHHHHhccCCC
Q 015950 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL-LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386 (397)
Q Consensus 320 laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~-i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~ 386 (397)
..|.+++..+|++.--+.+.-..+. .....+- +..+..+.+||| --.+-.++..+.+.+++...+
T Consensus 71 ~lA~~lA~~l~~p~~~~rk~~k~yg-~~~~~~g~~~~g~~VlIVDD-vitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 71 PLVAVTSVETGVPYVIARKQAKEYG-TGNRIEGRLDEGEEVVVLED-IATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred HHHHHHHHHHCCCEEEEeccCCcCC-CCCeEEecCCCcCEEEEEEE-eeCCCHHHHHHHHHHHHCCCe
Confidence 3556667778876543333222221 0111111 223467899999 789999999999999987643
No 306
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=34.30 E-value=35 Score=31.95 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-.||||++.-++..+.+.|++|.
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCce
Confidence 3568999999999999988998874
No 307
>PLN02759 Formate--tetrahydrofolate ligase
Probab=34.24 E-value=55 Score=34.59 Aligned_cols=33 Identities=39% Similarity=0.385 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCC------ChHHHHHHHHHHHHh-CCCCeE
Q 015950 130 FSGVLVGVTGSV------GKSTTKSMIALALES-LGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~~l~~iL~~-~g~~v~ 162 (397)
.+.+.|-||+.+ |||||+-=|.+.|.+ .|.++.
T Consensus 67 ~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 67 PDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 357889999875 999999999999986 788874
No 308
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=34.19 E-value=55 Score=30.69 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=25.3
Q ss_pred EEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 34 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 34 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEE
Confidence 466777 57999999999999999999983
No 309
>PRK13974 thymidylate kinase; Provisional
Probab=34.03 E-value=71 Score=28.85 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.4
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCC
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGV 159 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~ 159 (397)
.+|++-| -.||||.+.+|...|...|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~ 32 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGL 32 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 4677777 46899999999999976653
No 310
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=34.02 E-value=51 Score=30.60 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=26.0
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCC
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~ 160 (397)
++.|.||| ..||||-+.-|...|++.|.|
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 57899999 899999999999999888855
No 311
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.99 E-value=26 Score=30.57 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=20.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999987 89999999988874
No 312
>PLN02293 adenine phosphoribosyltransferase
Probab=33.76 E-value=55 Score=29.20 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=26.3
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhccCCCe
Q 015950 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNV 387 (397)
Q Consensus 356 ~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r 387 (397)
+..+.++|| --.|-.++.++++.+++.....
T Consensus 125 G~rVlIVDD-vitTG~T~~~~~~~l~~~Ga~~ 155 (187)
T PLN02293 125 GERALVIDD-LIATGGTLCAAINLLERAGAEV 155 (187)
T ss_pred CCEEEEEec-cccchHHHHHHHHHHHHCCCEE
Confidence 466888999 8899999999999999986543
No 313
>PLN02327 CTP synthase
Probab=33.74 E-value=98 Score=32.54 Aligned_cols=30 Identities=40% Similarity=0.500 Sum_probs=26.8
Q ss_pred cEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~ 35 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCcee
Confidence 5688888 57999999999999999999983
No 314
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.63 E-value=4.5e+02 Score=29.04 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred cEEEEcCC--CChHHHHHHHHHH--HHhCCCC
Q 015950 133 VLVGVTGS--VGKSTTKSMIALA--LESLGVN 160 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~i--L~~~g~~ 160 (397)
.+++|||- .||||.-.++..+ +...|..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~ 354 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIP 354 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCC
Confidence 68999995 4899999999877 4355543
No 315
>PRK13975 thymidylate kinase; Provisional
Probab=33.59 E-value=42 Score=29.50 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
.+|.|.|. .||||.+.+|+.-|.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47888884 689999999999993
No 316
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=33.47 E-value=29 Score=31.25 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 5689999986 89999999988874
No 317
>PRK04182 cytidylate kinase; Provisional
Probab=32.96 E-value=39 Score=29.02 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.0
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+|.|+| -.||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 688888 468999999998877
No 318
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=32.64 E-value=61 Score=29.58 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEE
Q 015950 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNVVQC 390 (397)
Q Consensus 357 ~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~ 390 (397)
..+.++|| .-+|-.+|.++++++++...+.|++
T Consensus 125 ~~VIlVDD-GiATGatm~aAi~~~r~~~~~~Ivi 157 (220)
T COG1926 125 RTVILVDD-GIATGATMKAAVRALRAKGPKEIVI 157 (220)
T ss_pred CEEEEEeC-CcchhHHHHHHHHHHHhcCCceEEE
Confidence 45677777 8999999999999999987777765
No 319
>PRK07078 hypothetical protein; Validated
Probab=32.29 E-value=60 Score=35.65 Aligned_cols=41 Identities=29% Similarity=0.243 Sum_probs=26.2
Q ss_pred cHHHHHHHHHH--HhhcCCCC-Cc-EEEEcCCCChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMAC--YARNSRFS-GV-LVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~--~~~~p~~~-~~-vI~VTGTnGKTTT~~~l~~iL 154 (397)
+..+.|+++.- +.+.-..+ +- ++| +|.|||||...+|.++|
T Consensus 471 el~~fLq~~~GY~Ltg~~~~q~~~~l~G-~G~NGKSt~l~~l~~ll 515 (759)
T PRK07078 471 ELQAYLQRMAGYALTGSTSEHALFFLYG-TGANGKSVFVNTLATIL 515 (759)
T ss_pred HHHHHHHHHhhhhhcCCCchheEEEEEC-CCCCCchHHHHHHHHHh
Confidence 45666666554 22321111 11 234 78999999999999999
No 320
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=32.24 E-value=53 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=18.8
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|++-||| -.||||+..-+-. ....+.++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~ 31 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVA 31 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeE
Confidence 5788888 7899998655444 345677763
No 321
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=32.17 E-value=81 Score=30.45 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+...|+++| -.||||+..+|+..| |++..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L---g~~~i 162 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL---GVPFV 162 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 346799998 679999999999887 55543
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=32.17 E-value=69 Score=28.17 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
...++|+|. .||||+...|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 457888885 489999988888873
No 323
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=31.97 E-value=1.1e+02 Score=32.09 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=26.7
Q ss_pred cEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 35 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVT 35 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 5688888 56999999999999999999983
No 324
>PRK13946 shikimate kinase; Provisional
Probab=31.86 E-value=49 Score=29.08 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+.|.++| -.||||+..+|++-|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678887 579999999999988
No 325
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=31.69 E-value=50 Score=29.18 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCC
Q 015950 311 PGLHLAINACAAAAVATLFGVS 332 (397)
Q Consensus 311 ~G~~n~~N~laAia~a~~lgi~ 332 (397)
+.+|+-.|-++|++.|..+|.+
T Consensus 143 i~eHqe~nR~aA~a~A~~~gat 164 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGAT 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhCCe
Confidence 4689999999999999998853
No 326
>PLN02318 phosphoribulokinase/uridine kinase
Probab=31.62 E-value=58 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHH
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
...+|||+| -.||||.+..|...+
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 457999999 468999999999987
No 327
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.55 E-value=32 Score=30.66 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.4
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999986 89999999988773
No 328
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=31.46 E-value=5.6e+02 Score=25.90 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHhhcCC---CCCcEEEEcCC--CChHHHHHHHHHHHH--hCCCCe-EEcCCCCcCccchh--hhhhccc
Q 015950 113 NTLNSLVNMACYARNSR---FSGVLVGVTGS--VGKSTTKSMIALALE--SLGVNV-FQSYGNWNNRVGVA--LSLIGID 182 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~---~~~~vI~VTGT--nGKTTT~~~l~~iL~--~~g~~v-~~t~g~~n~~~g~p--~~l~~~~ 182 (397)
...+++..+-.+.-. . .+.++|..-|. .|||||..=|++.+. ...++| +-|..+| ++|-- +....--
T Consensus 182 ~~~~~l~~~~~~~~~-~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY--RIGA~EQLk~Ya~i 258 (407)
T COG1419 182 YFSEKLRKLLLSLIE-NLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY--RIGAVEQLKTYADI 258 (407)
T ss_pred hHHHHHHHHHHhhcc-ccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc--hhhHHHHHHHHHHH
Confidence 556666665553322 3 34667777774 689999999999885 333455 2344554 34421 1111111
Q ss_pred CCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhc
Q 015950 183 RAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223 (397)
Q Consensus 183 ~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld 223 (397)
-++++-|..-. ..-...+..+-+.|+..+=.+|+.|.|
T Consensus 259 m~vp~~vv~~~---~el~~ai~~l~~~d~ILVDTaGrs~~D 296 (407)
T COG1419 259 MGVPLEVVYSP---KELAEAIEALRDCDVILVDTAGRSQYD 296 (407)
T ss_pred hCCceEEecCH---HHHHHHHHHhhcCCEEEEeCCCCCccC
Confidence 24445554432 111122223345677777777777766
No 329
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=31.02 E-value=60 Score=34.21 Aligned_cols=33 Identities=39% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCC------ChHHHHHHHHHHHH-hCCCCeE
Q 015950 130 FSGVLVGVTGSV------GKSTTKSMIALALE-SLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~~l~~iL~-~~g~~v~ 162 (397)
.+.+.|-||+.+ |||||+-=|.+.|. ..|.++.
T Consensus 66 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 66 PNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 357889999876 99999999999997 5788864
No 330
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.95 E-value=33 Score=30.79 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999986 79999998888773
No 331
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=64 Score=31.41 Aligned_cols=78 Identities=23% Similarity=0.179 Sum_probs=50.8
Q ss_pred hcHHHHHhcCCcEEEEe--cc---cCCC------CCccEEEEcCCCCccHHHHHHHHHHHhhc-CCCCCcEEEEcCC---
Q 015950 76 EFISPELYGKGCVGVIG--NQ---VCNN------WDKGFVQVEGNGNVNTLNSLVNMACYARN-SRFSGVLVGVTGS--- 140 (397)
Q Consensus 76 ~~i~~A~~~~GA~~vv~--~~---~~~~------~~~~~i~v~~~~~~d~~~aL~~la~~~~~-p~~~~~vI~VTGT--- 140 (397)
.|+.+|++ +|...+=. +. .... .++.+.-|. .+..-|..+.. +. ++.+.++|.|-||
T Consensus 88 ~~i~eAl~-~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR-----~p~~~l~~~~t--G~~~k~~a~~V~vvGTd~~ 159 (339)
T COG3367 88 EYIVEALE-AGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVR-----KPPLDLEYLCT--GMARKVDAKVVLVVGTDCA 159 (339)
T ss_pred HHHHHHHH-hCchhhhhhHHHhhcChHHHHHHHHcCCeeEeec-----cCccchhhhcc--CcccccCCcEEEEeccccc
Confidence 78999999 99654321 11 1110 145555444 44444443331 21 2455789999998
Q ss_pred CChHHHHHHHHHHHHhCCCCe
Q 015950 141 VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 141 nGKTTT~~~l~~iL~~~g~~v 161 (397)
.||=||+..|...+++.|+++
T Consensus 160 vGKrTTa~~L~~~~~e~G~~a 180 (339)
T COG3367 160 VGKRTTALELREAAREEGIKA 180 (339)
T ss_pred cchhHHHHHHHHHHHHhCCcc
Confidence 599999999999999999986
No 332
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=30.90 E-value=59 Score=29.48 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.8
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-.||||++.-++..+.+.|++|.
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~ 31 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVL 31 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEE
Confidence 4567999999999999988998874
No 333
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.90 E-value=50 Score=34.18 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=22.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH-hCC-CCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~-~~g-~~v~ 162 (397)
..+|++.|-| |||||...|+..+. ..| .+|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~ 290 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA 290 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE
Confidence 4688888865 79999999998874 344 3553
No 334
>PRK05854 short chain dehydrogenase; Provisional
Probab=30.57 E-value=1.4e+02 Score=28.48 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhcccc-
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i- 207 (397)
..+.+++-|||.+| -+-.-++..|.+.|.+|.....+........-.+.....+.++.+++++.+...++.++.+-+
T Consensus 11 ~l~gk~~lITGas~--GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSGKRAVVTGASD--GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 44567899999874 445555555557888875432221100001111212223445667777777765555443321
Q ss_pred ----CCcEEEEcCCCh
Q 015950 208 ----RPEIRVVLNVGD 219 (397)
Q Consensus 208 ----~p~iaViTNi~~ 219 (397)
+.|+ +|-|.+.
T Consensus 89 ~~~~~iD~-li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHL-LINNAGV 103 (313)
T ss_pred HhCCCccE-EEECCcc
Confidence 3455 4445543
No 335
>PRK07261 topology modulation protein; Provisional
Probab=30.39 E-value=52 Score=28.65 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.5
Q ss_pred EEEcCC--CChHHHHHHHHHHH
Q 015950 135 VGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 135 I~VTGT--nGKTTT~~~l~~iL 154 (397)
|.|+|. .||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 566664 48999999988776
No 336
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=30.26 E-value=79 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCCCcEEEEcC--CCChHHHHHHHHHH
Q 015950 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (397)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~~l~~i 153 (397)
...+|.|+|.| +.||||+.+.|...
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 46788999999 88999998888764
No 337
>PRK13947 shikimate kinase; Provisional
Probab=29.91 E-value=56 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
-|.++| -.||||++.+|+..| |++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCE
Confidence 366766 579999999999988 4554
No 338
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=29.82 E-value=1.5e+02 Score=30.64 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=48.6
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHH----HHhcCCCCCC--CeeeE--Ee--------ecCCeEEEEecCCC
Q 015950 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQVG----ISLSNFSPVQ--MRSEL--LV--------SRSGIKIVNDAYNA 368 (397)
Q Consensus 305 ~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~----~~L~~~~~~~--GR~e~--i~--------~~~~~~vi~Dsyah 368 (397)
-+.+|..|.. +|.+++..+|++..... ...++|.... .|... ++ .++.+.+|||++ .
T Consensus 295 VvpVP~s~~~------~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsi-t 367 (474)
T PRK06388 295 VVPVPDSGRS------QAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSI-V 367 (474)
T ss_pred EEeeCCCcHH------HHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeE-C
Confidence 3566777742 27788889999986521 1112221111 12111 11 134689999976 7
Q ss_pred CHHHHHHHHHHHhccCCCeEEE
Q 015950 369 NPISTRAAIDLLKDIACNVVQC 390 (397)
Q Consensus 369 np~s~~~~l~~l~~~~~~rv~~ 390 (397)
+-..++++.+.|++...+.|++
T Consensus 368 tGtTl~~~~~~L~~aGak~V~~ 389 (474)
T PRK06388 368 RGNTMRFIVKIMRKYGAKEVHV 389 (474)
T ss_pred cHHHHHHHHHHHHHcCCCEEEE
Confidence 8999999999999887666654
No 339
>PRK09213 pur operon repressor; Provisional
Probab=29.72 E-value=44 Score=31.78 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcC---------C-CCCCCeeeEE-------eecCCeEEEEecCCCCHHHHHHHHHHHh
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSN---------F-SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLLK 381 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~---------~-~~~~GR~e~i-------~~~~~~~vi~Dsyahnp~s~~~~l~~l~ 381 (397)
...|.++|..||.+.--+.+.-+. | .+..+|.|.+ ..+..+.|||| .-.+-.++.++++.++
T Consensus 142 IplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll~ 220 (271)
T PRK09213 142 IPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDD-FMKAGGTINGMISLLK 220 (271)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEee-ecccCHhHHHHHHHHH
Confidence 456778888888875433331111 0 1223444443 23567999999 8999999999999999
Q ss_pred ccCCC
Q 015950 382 DIACN 386 (397)
Q Consensus 382 ~~~~~ 386 (397)
+....
T Consensus 221 e~Ga~ 225 (271)
T PRK09213 221 EFDAE 225 (271)
T ss_pred HCCCE
Confidence 87543
No 340
>PRK13695 putative NTPase; Provisional
Probab=29.55 E-value=79 Score=27.32 Aligned_cols=28 Identities=43% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
.|++||. .||||....+..-|+..|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3788875 579999999988886667664
No 341
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=29.51 E-value=60 Score=26.08 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEE
Q 015950 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNVVQC 390 (397)
Q Consensus 357 ~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~ 390 (397)
..+.+||| --.+-.++..+++.|++...+.+.+
T Consensus 89 k~vliVDD-vi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 89 KRVLIVDD-VIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp SEEEEEEE-EESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred eeEEEEee-eEcccHHHHHHHHHHHhCCCcEEEE
Confidence 56889999 6789999999999999987665443
No 342
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=29.44 E-value=50 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
+|+|+|. .||||++..|+..| |+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~~ 28 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLKL 28 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCce
Confidence 6889985 68999999998876 5544
No 343
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=29.44 E-value=85 Score=28.23 Aligned_cols=69 Identities=20% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHh---cCCCCCCCeeeEE---eecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeE
Q 015950 319 ACAAAAVATLFGVSLAQVGISL---SNFSPVQMRSELL---VSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVV 388 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L---~~~~~~~GR~e~i---~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv 388 (397)
+..|-.++..+|.+...+.+.- .....+.|.+..- ..+..+.++|| -..+-.++.++.+.+++.....+
T Consensus 97 ~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDD-VitTG~Tl~~ai~~l~~~Ga~~v 171 (200)
T PRK02277 97 VPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDD-VITSGTTMKETIEYLKEHGGKPV 171 (200)
T ss_pred HHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEee-ccCchHHHHHHHHHHHHcCCEEE
Confidence 3455666677777653222111 0011123333211 12467899999 78999999999999998765444
No 344
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=29.27 E-value=59 Score=33.95 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCe
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v 161 (397)
|-.+|..+|..-..+-...-...||||| |||-|. +.+....+.++
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPt 60 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPT 60 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCe
Confidence 6678888888844431333467999998 899774 44444445554
No 345
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.25 E-value=33 Score=32.87 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.3
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
..++|+.|-| ||||+-.+|..+++....++
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i 62 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 5699999988 69999999999996544433
No 346
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=29.25 E-value=53 Score=33.66 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=46.2
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcE
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~i 211 (397)
=|-|+|. .||||-+..++..+.+.|+ +.+|.-+ |-.|.--++=++|.=+|.+|... .++.-+++||+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~Gk-iVKTmEs-------PRDl~v~~eITQYs~l~g~me~t---~DiLLLvRPDY 333 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGK-IVKTMES-------PRDLQVSPEITQYSPLEGDMEKT---ADILLLVRPDY 333 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCc-EEeeccC-------cccccCChhhhhcccccCchhhh---ccEEEEecCCc
Confidence 3777774 7899999999999977665 6666543 22221112234666666655433 33333568888
Q ss_pred EEEcCCCh
Q 015950 212 RVVLNVGD 219 (397)
Q Consensus 212 aViTNi~~ 219 (397)
.|+--+..
T Consensus 334 TIyDEmR~ 341 (604)
T COG1855 334 TIYDEMRK 341 (604)
T ss_pred eehhhhhc
Confidence 88755543
No 347
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=29.15 E-value=43 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..++++.|-| ||||...+|..++.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5689999986 79999999998874
No 348
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=29.13 E-value=86 Score=28.48 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeE---EeecCCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 015950 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSEL---LVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385 (397)
Q Consensus 321 aAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~---i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~ 385 (397)
.|.+++..++.+...+.+..... +..+++++ +..+..+.+||| --.|-.++.++.+.+++...
T Consensus 81 ~A~~vA~~l~~p~~~~RK~~K~~-G~~~~~~~~g~~~~g~~VlIVDD-ViTTG~Ti~~a~~~L~~~G~ 146 (206)
T PRK13809 81 LATSISLKYNIPMVLRRKELKNV-DPSDAIKVEGLFTPGQTCLVIND-MVSSGKSIIETAVALEEEGL 146 (206)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCC-CCcCEEEEccccCCCCEEEEEEe-ccccCHHHHHHHHHHHHCCC
Confidence 45555666777765443322221 12223322 223456899999 78899999999999998753
No 349
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=29.03 E-value=32 Score=33.13 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..++|+.|.| ||||+..+|..++..
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999987 799999999998853
No 350
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.95 E-value=2e+02 Score=23.14 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=43.9
Q ss_pred ccccCCCCEEEEec--CCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEEEcCCCCccHHHHHHHHHHHhhcCCCCC
Q 015950 55 ILAPNKNQWFFAIT--GQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSG 132 (397)
Q Consensus 55 ~v~~~~g~lFval~--G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~ 132 (397)
...+ +|+++++- |+..+--+-++.|.+ +|+..|... . +. -|.+++.- ...
T Consensus 40 ~~~~--~dl~I~iS~SG~t~e~i~~~~~a~~-~g~~iI~IT-------------~-----~~--~l~~~~~~-----~~~ 91 (119)
T cd05017 40 FVDR--KTLVIAVSYSGNTEETLSAVEQAKE-RGAKIVAIT-------------S-----GG--KLLEMARE-----HGV 91 (119)
T ss_pred CCCC--CCEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEEe-------------C-----Cc--hHHHHHHH-----cCC
Confidence 4566 88888774 666566666777777 776443332 1 21 13444431 122
Q ss_pred c-EEEEcCCCChHHHHHHHHHHH
Q 015950 133 V-LVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~-vI~VTGTnGKTTT~~~l~~iL 154 (397)
. +..-++..|+.|...|+..+|
T Consensus 92 ~~~~~p~~~~~r~s~~~~~~~~~ 114 (119)
T cd05017 92 PVIIIPKGLQPRAAFPYLFTALL 114 (119)
T ss_pred cEEECCCCCCCceeHHHHHHHHH
Confidence 3 334667889999999998888
No 351
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.93 E-value=36 Score=31.98 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999987 89999999998884
No 352
>PRK06197 short chain dehydrogenase; Provisional
Probab=28.84 E-value=1.6e+02 Score=27.83 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhh
Q 015950 128 SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (397)
Q Consensus 128 p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~ 203 (397)
|+...++|.|||.+| -+-.-++..|.+.|.++.....+..........+.....+.++.+++++.....++.++
T Consensus 12 ~~~~~k~vlItGas~--gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 12 PDQSGRVAVVTGANT--GLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred ccCCCCEEEEcCCCC--cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 345568999999886 34444444444778887533222100000001111111234556667766665544443
No 353
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=28.84 E-value=78 Score=27.62 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=22.9
Q ss_pred EEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|.|||- .||||...-+.+.|+..|.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 678884 6899999999999988888774
No 354
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=28.73 E-value=82 Score=28.06 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=26.1
Q ss_pred ecCCeEEEEecCCCCHHHHHHHHHHHhccCCC
Q 015950 355 SRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386 (397)
Q Consensus 355 ~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~ 386 (397)
.++.+.++|| .-.|-.++.++++.+++....
T Consensus 113 ~G~rVlIVDD-vitTG~T~~~ai~ll~~aGa~ 143 (187)
T PRK12560 113 KGDRVAIIDD-TLSTGGTVIALIKAIENSGGI 143 (187)
T ss_pred CcCEEEEEEe-ccccCHHHHHHHHHHHHCCCE
Confidence 3467899999 889999999999999987543
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.66 E-value=40 Score=29.75 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhC
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESL 157 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~ 157 (397)
+..+++|.|-| ||||...+|..++...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 52 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN 52 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 35689999976 5999999999888533
No 356
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=28.46 E-value=1.1e+02 Score=25.68 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCccccCCCCEEEEecCCcC---CchhcHHHHHhcCCcEEEEecccCCC-------CCccEEEEc
Q 015950 53 TRILAPNKNQWFFAITGQHF---DAHEFISPELYGKGCVGVIGNQVCNN-------WDKGFVQVE 107 (397)
Q Consensus 53 Sr~v~~~~g~lFval~G~~~---dgh~~i~~A~~~~GA~~vv~~~~~~~-------~~~~~i~v~ 107 (397)
...+++ |++.|+ |.+| ..++++.-|++..|..+||.+.-... -++|.|.++
T Consensus 40 ~~~v~~--gdilVa--G~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~ 100 (129)
T cd01674 40 STKTKQ--GDILVS--GFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELP 100 (129)
T ss_pred hhcCCC--CCEEEe--CCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEech
Confidence 356889 999998 6665 34677777887788888888642111 267778777
No 357
>PRK08118 topology modulation protein; Reviewed
Probab=28.35 E-value=64 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.5
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+.|.|.| -.||||.+..|+..|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466766 468999999999988
No 358
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=28.31 E-value=88 Score=27.89 Aligned_cols=21 Identities=48% Similarity=0.469 Sum_probs=15.2
Q ss_pred EEEEcCCC--ChHHHHHHHHHHH
Q 015950 134 LVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+|.|+|-. ||||+...+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57788854 6999988655555
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=28.28 E-value=38 Score=29.82 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 69999998887773
No 360
>PRK09183 transposase/IS protein; Provisional
Probab=28.22 E-value=84 Score=29.51 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=22.6
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.+.|. .|||+.+..|...+...|++|.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~ 134 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVR 134 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34556663 5899999999888767888774
No 361
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=28.16 E-value=1.6e+02 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=27.3
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEE
Q 015950 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNVVQC 390 (397)
Q Consensus 357 ~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~ 390 (397)
..+.+|||++ .+-..++++.+.|++...++|++
T Consensus 368 k~vllVDD~i-ttG~T~~~~~~~L~~~ga~~v~~ 400 (510)
T PRK07847 368 KRLVVVDDSI-VRGNTQRALVRMLREAGAAEVHV 400 (510)
T ss_pred CEEEEEeccc-CchHHHHHHHHHHHHcCCCEEEE
Confidence 4689999966 68899999999999987777664
No 362
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=28.14 E-value=55 Score=29.26 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEcCCC--ChHHHHHHHHHHH
Q 015950 134 LVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+++|+|.| ||||+.+.|..++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 78999987 7999999998887
No 363
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=28.08 E-value=77 Score=28.75 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=20.7
Q ss_pred cEEEEcCCC--ChHHHHHHHH--HHHHhCCCCe
Q 015950 133 VLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~--~iL~~~g~~v 161 (397)
+++.|||.| ||||.-..+. .+|...|.-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 689999977 6888877777 4454556544
No 364
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=27.93 E-value=41 Score=28.64 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=15.0
Q ss_pred EEcCC--CChHHHHHHHHHHH
Q 015950 136 GVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 136 ~VTGT--nGKTTT~~~l~~iL 154 (397)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34553 49999999999888
No 365
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=27.76 E-value=55 Score=30.25 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.4
Q ss_pred EEEEcC--CCChHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIA 151 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~ 151 (397)
+|+||| -.||||++.++.
T Consensus 2 iI~i~G~~gsGKstva~~~~ 21 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFII 21 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 799999 579999988874
No 366
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=83 Score=31.29 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESL 157 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~ 157 (397)
+.|-||| |||.|+.++..-|+..
T Consensus 47 iyG~~GT-GKT~~~~~v~~~l~~~ 69 (366)
T COG1474 47 IYGPTGT-GKTATVKFVMEELEES 69 (366)
T ss_pred EECCCCC-CHhHHHHHHHHHHHhh
Confidence 3455554 8999999999999755
No 367
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=27.58 E-value=1.6e+02 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
...+++|+++|. .||||+..-+.+-+ ..+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~-~~~~~v 52 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL-KDEVKI 52 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH-hcCCeE
Confidence 556899999995 56777655554444 233454
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=27.57 E-value=68 Score=29.32 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+.+|.|-| ||||+..+|..+|
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999987 7999999999887
No 369
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=27.46 E-value=50 Score=30.01 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5689999976 79999999888763
No 370
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=27.37 E-value=58 Score=31.26 Aligned_cols=28 Identities=36% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
..+++|.||| -.||||+...|. ..|+.+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~----~~g~~~ 33 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE----DLGYYC 33 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH----HcCCeE
Confidence 3467899999 568999998885 445544
No 371
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=27.20 E-value=63 Score=29.49 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.0
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.+|+|+|. .||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999995 58999999999877
No 372
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=27.18 E-value=68 Score=33.13 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=22.9
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhC
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESL 157 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~ 157 (397)
+++.|-|||| .|||+++..|.+.|++.
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4677889987 49999999999999754
No 373
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=26.94 E-value=1.6e+02 Score=30.32 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=48.2
Q ss_pred EEeCCChHHHHHHHHHHHHHHHHcCCCHHHHH--HH-h-cCCCC-------CCCeeeE--Ee---ecCCeEEEEecCCCC
Q 015950 306 FVIPSPGLHLAINACAAAAVATLFGVSLAQVG--IS-L-SNFSP-------VQMRSEL--LV---SRSGIKIVNDAYNAN 369 (397)
Q Consensus 306 ~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~--~~-L-~~~~~-------~~GR~e~--i~---~~~~~~vi~Dsyahn 369 (397)
+.+|..| ..+|..++..+|++.+... .. . ..|.. ..-|++. +. .+..+.+|||+ -.+
T Consensus 293 v~vPdsg------~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~-ItT 365 (469)
T PRK05793 293 IGVPDSG------IPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDS-IVR 365 (469)
T ss_pred EEcCccH------HHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccc-cCc
Confidence 4455555 5578888999999886420 00 0 00000 0012211 10 23568899995 578
Q ss_pred HHHHHHHHHHHhccCCCeEEEE
Q 015950 370 PISTRAAIDLLKDIACNVVQCK 391 (397)
Q Consensus 370 p~s~~~~l~~l~~~~~~rv~~v 391 (397)
-..++++.+.|++...++|++.
T Consensus 366 GtTl~~~~~~Lr~aGAk~V~~~ 387 (469)
T PRK05793 366 GTTSKRLVELLRKAGAKEVHFR 387 (469)
T ss_pred hHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999887877764
No 374
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.79 E-value=43 Score=29.77 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|..++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999986 89999999887763
No 375
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=26.76 E-value=69 Score=35.12 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.|.+| .||||+...+..+++..|+++.
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~ 400 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVI 400 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEE
Confidence 445555 5899999999999988898874
No 376
>PRK04296 thymidine kinase; Provisional
Probab=26.72 E-value=1.1e+02 Score=27.18 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=18.5
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.++-|||- .||||....+..-+...|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~ 34 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVL 34 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 46789997 5566555444444435677764
No 377
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=26.68 E-value=62 Score=30.71 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=19.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 139 GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 139 GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|--|||||+.=|+..|...|++|.
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl 32 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVL 32 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CCcccChhhhHHHHHHHhccceee
Confidence 577999999999999999999983
No 378
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=26.53 E-value=43 Score=31.23 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 89999999998874
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=26.44 E-value=81 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|-|-| ||||+-.+|..++
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999988 7999999987554
No 380
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.44 E-value=91 Score=30.52 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSVGKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~~l~~iL~ 155 (397)
.+-+.|.+|| ||||.+..++..|.
T Consensus 66 ~ilL~G~pGt-GKTtla~~lA~~l~ 89 (327)
T TIGR01650 66 RVMVQGYHGT-GKSTHIEQIAARLN 89 (327)
T ss_pred cEEEEeCCCC-hHHHHHHHHHHHHC
Confidence 3445566664 89999999999993
No 381
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=26.43 E-value=61 Score=29.53 Aligned_cols=27 Identities=41% Similarity=0.726 Sum_probs=20.6
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+||+||. .||||++. .|++.|..++
T Consensus 1 M~iVGLTGgiatGKStVs~----~f~~~G~~vI 29 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQ----VFKALGIPVI 29 (225)
T ss_pred CeEEEeecccccChHHHHH----HHHHcCCcEe
Confidence 358999995 78999865 5667788875
No 382
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.10 E-value=42 Score=31.71 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.3
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..+++|.|.| ||||+..+|..++..
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999987 799999999988743
No 383
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=26.10 E-value=1.3e+02 Score=29.10 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=43.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCC---CCcCccchhhhhhcc--cCCCcEEEEeecCCCcchHHhhccccC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG---NWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMAR 208 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g---~~n~~~g~p~~l~~~--~~~~~~~VlE~~~~~~~~~~~~~~~i~ 208 (397)
+-||||-.| +.|+++|-..||.|++... .+|... . .|.+. ..+.++-+.+.++.....+.|+.+.++
T Consensus 7 ITGITGQDG-----sYLa~lLLekGY~VhGi~Rrss~~n~~r-i--~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~ 78 (345)
T COG1089 7 ITGITGQDG-----SYLAELLLEKGYEVHGIKRRSSSFNTPR-I--HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQ 78 (345)
T ss_pred EecccCCch-----HHHHHHHHhcCcEEEEEeeccccCCccc-c--eeccccccCCceeEEEeccccchHHHHHHHHhcC
Confidence 568888887 5666666699999976532 233221 1 23332 355567777777766666667666678
Q ss_pred Cc
Q 015950 209 PE 210 (397)
Q Consensus 209 p~ 210 (397)
||
T Consensus 79 Pd 80 (345)
T COG1089 79 PD 80 (345)
T ss_pred ch
Confidence 87
No 384
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=26.01 E-value=75 Score=27.95 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=19.6
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
-+.++|+ .|||..+..|..-+-..|++|.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~ 79 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVL 79 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCccee
Confidence 4555554 5899999988876657888874
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.92 E-value=1e+02 Score=31.38 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH-HhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL-ESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL-~~~g~~v~ 162 (397)
..+|.++|- .|||||+.-|+.-+ ...|.+|.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~ 256 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS 256 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 457888884 68999999998644 36677774
No 386
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.78 E-value=46 Score=29.99 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.3
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999986 89999999988773
No 387
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=25.75 E-value=1.5e+02 Score=30.26 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=49.9
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHH-HH--Hh-cCC-------CCCCCeeeEEe-----ecCCeEEEEecCCC
Q 015950 305 KFVIPSPGLHLAINACAAAAVATLFGVSLAQV-GI--SL-SNF-------SPVQMRSELLV-----SRSGIKIVNDAYNA 368 (397)
Q Consensus 305 ~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i-~~--~L-~~~-------~~~~GR~e~i~-----~~~~~~vi~Dsyah 368 (397)
-+.+|..| ...|.+++..+|+|.... .+ .+ +.+ +.+..|+.... .+..+.+|||++ .
T Consensus 279 Vv~vPd~g------~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvi-t 351 (445)
T PRK08525 279 VVPVPDSG------VPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSI-V 351 (445)
T ss_pred EEECCchH------HHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEeccc-C
Confidence 34556655 455888889999886421 10 00 111 11124443211 145789999954 7
Q ss_pred CHHHHHHHHHHHhccCCCeEEEE
Q 015950 369 NPISTRAAIDLLKDIACNVVQCK 391 (397)
Q Consensus 369 np~s~~~~l~~l~~~~~~rv~~v 391 (397)
+-..+.++.+.|++...++|++.
T Consensus 352 TG~Tl~~a~~~Lr~aGA~~V~v~ 374 (445)
T PRK08525 352 RGTTSKKIVSLLRAAGAKEIHLR 374 (445)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999877777764
No 388
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=25.73 E-value=1.4e+02 Score=28.43 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.6
Q ss_pred HHHHHHhhcCC-CCCcEEEEcC--CCChHHHHHHHHHHHHhC
Q 015950 119 VNMACYARNSR-FSGVLVGVTG--SVGKSTTKSMIALALESL 157 (397)
Q Consensus 119 ~~la~~~~~p~-~~~~vI~VTG--TnGKTTT~~~l~~iL~~~ 157 (397)
..|+....++. ....+||++| =.||||...++.+-|+..
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34555444433 5567999999 589999999999999766
No 389
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=25.70 E-value=88 Score=26.54 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcC--CCCCcEEEEcCCCChHHHHHH-HHHHH
Q 015950 115 LNSLVNMACYARNS--RFSGVLVGVTGSVGKSTTKSM-IALAL 154 (397)
Q Consensus 115 ~~aL~~la~~~~~p--~~~~~vI~VTGTnGKTTT~~~-l~~iL 154 (397)
.+++..+...+... ....-+.+.||| |||-+... +..+.
T Consensus 9 ~~ai~~i~~~~~~~~~~~~~ll~~~tGs-GKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 9 QEAIARIINSLENKKEERRVLLNAPTGS-GKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHTTSGCSEEEEEESTTS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCC-CcChhhhhhhhccc
Confidence 35566666544331 233456677886 99999884 55555
No 390
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=25.69 E-value=2.3e+02 Score=24.41 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhh
Q 015950 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (397)
Q Consensus 142 GKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dH 221 (397)
|=-|+..+|+..+...|+.+..+. .|.. +.+.+.-++-+-+|..... .....-++|+.|..+
T Consensus 4 Gv~t~g~ila~a~~~~G~~v~~~~-~ygs---------~~rGG~~~~~vris~~~~~---~~~~~~~~Dilv~l~----- 65 (173)
T PF01558_consen 4 GVVTAGKILARAAAREGYYVQSTP-EYGS---------EIRGGPVVSHVRISDEPII---PSPPVGEADILVALD----- 65 (173)
T ss_dssp THHHHHHHHHHHHHHTTSEEEEEE-EEES---------SSSSSCEEEEEEEESS--S---SSS-TSSESEEEESS-----
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe-CCCh---------hhcCCeEEEEEEEecCcCc---cCcccCCCCEEEEcC-----
Confidence 445778899999989999875332 1111 2334555666666532121 111224889998886
Q ss_pred hccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhc--CCCC----CcEEEEeccCCcceEEEeceEEecCCeEEE
Q 015950 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VPRG----VRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (397)
Q Consensus 222 ld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~--~~~~----~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~ 295 (397)
.+.+. +.+..++++|++|+|.+........ .... .+++.+-..
T Consensus 66 ------~~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~~ip~~--------------------- 114 (173)
T PF01558_consen 66 ------PEALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVIGIPAT--------------------- 114 (173)
T ss_dssp ------HHHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEEEE-HH---------------------
T ss_pred ------HHHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEEeccHH---------------------
Confidence 23332 6677788999999998642221111 1000 011111100
Q ss_pred EEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 015950 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (397)
Q Consensus 296 ~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~ 343 (397)
++-....+..-..|.++.-+++..++++.+.+.+++++.
T Consensus 115 ---------~ia~~~~~~~~~~N~~~lGa~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 115 ---------EIAKELGGNPRFANMVMLGALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp ---------HHHHHTTS-GGGHHHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred ---------HHHHhhhcchhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 011112233566788888888889999999999988763
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=25.68 E-value=67 Score=29.06 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|+|-| ||||...+|..++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999976 7999999999887
No 392
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.62 E-value=50 Score=31.60 Aligned_cols=30 Identities=40% Similarity=0.451 Sum_probs=24.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
..++|.-|-| |||||-.||..++...+.+|
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 4689999977 69999999999997655554
No 393
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.62 E-value=2.2e+02 Score=25.61 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhcccc---
Q 015950 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA--- 207 (397)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i--- 207 (397)
+.+.|.|||.+| ..=.++..+++ +.|+++..+..+.. ........+..+.++-+++++.....++.++..-+
T Consensus 4 ~~~~vlItGasg-~iG~~l~~~l~-~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASS-GIGEGIARRFA-AEGARVVVTDRNEE---AAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHH-HCCCEEEEEeCCHH---HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999887 34445666666 77888754322211 11111111222445667777766665555443222
Q ss_pred --CCcEEEEcCCCh
Q 015950 208 --RPEIRVVLNVGD 219 (397)
Q Consensus 208 --~p~iaViTNi~~ 219 (397)
++|+.|. |.+.
T Consensus 79 ~~~~d~vi~-~ag~ 91 (251)
T PRK07231 79 FGSVDILVN-NAGT 91 (251)
T ss_pred hCCCCEEEE-CCCC
Confidence 5676544 4443
No 394
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=25.58 E-value=58 Score=30.34 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.2
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|..++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35789999986 89999999998873
No 395
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=25.50 E-value=50 Score=29.51 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999998888773
No 396
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.47 E-value=49 Score=29.83 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=20.4
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999998773
No 397
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=25.46 E-value=80 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=19.9
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
...+++|.|.| ||||..+.|...|
T Consensus 21 ~~g~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999977 7999999988877
No 398
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.44 E-value=1.7e+02 Score=28.47 Aligned_cols=22 Identities=50% Similarity=0.478 Sum_probs=14.5
Q ss_pred cEEEEcC--CCChHHHHH-HHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKS-MIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~-~l~~iL 154 (397)
-.|-||| -+|||||.. ||.++=
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 3688888 468988864 454444
No 399
>PRK10908 cell division protein FtsE; Provisional
Probab=25.41 E-value=47 Score=30.02 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=20.8
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|.|-| ||||...+|..++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999986 89999999987773
No 400
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.38 E-value=42 Score=30.30 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 69999998887763
No 401
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=25.33 E-value=50 Score=29.34 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999999988773
No 402
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.32 E-value=66 Score=28.43 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.6
Q ss_pred CcEEEEcCCCC--hHHHHHHHHHHH
Q 015950 132 GVLVGVTGSVG--KSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~~l~~iL 154 (397)
..+++|+|.|| |||...+|+.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999775 999888887654
No 403
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.32 E-value=50 Score=30.15 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.4
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999976 69999999998874
No 404
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=25.25 E-value=77 Score=27.80 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=18.7
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.+++|+|. .||||....|..+|
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 57888885 58999999999988
No 405
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=25.16 E-value=1.7e+02 Score=29.13 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=44.1
Q ss_pred CchhcHHHHHhcCCcEEEEecccCCCCCccEEE--EcCCCCccHHHHHHHHHHHhhcC----CCCCcEEEEcC--CCChH
Q 015950 73 DAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ--VEGNGNVNTLNSLVNMACYARNS----RFSGVLVGVTG--SVGKS 144 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~--v~~~~~~d~~~aL~~la~~~~~p----~~~~~vI~VTG--TnGKT 144 (397)
..|+++-+++...|..-++.+... ...-|.+. +- -..+++.++..+.+.. ....++++++| -.|||
T Consensus 19 ~a~qr~~dmI~~~g~~~~~~~~~~-~~~y~~F~~~~~-----G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKS 92 (361)
T smart00763 19 NAHQRLLDMIGEAGVEDVVENNRG-IKRYRFFDHDFF-----GMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKS 92 (361)
T ss_pred HHHHHHHHHHhccCcEEeccCCcc-eeeccccchhcc-----CcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHH
Confidence 567888888874554433322110 01122232 22 2334455555533321 12357889999 68999
Q ss_pred HHHHHHHHHHHh
Q 015950 145 TTKSMIALALES 156 (397)
Q Consensus 145 TT~~~l~~iL~~ 156 (397)
|.++.|+..|+.
T Consensus 93 tla~~La~~l~~ 104 (361)
T smart00763 93 SLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHhh
Confidence 999999999954
No 406
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=25.15 E-value=56 Score=34.79 Aligned_cols=21 Identities=52% Similarity=0.760 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 015950 134 LVGVTGSVGKSTTKSMIALALE 155 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~ 155 (397)
+.|..|+ ||||++..++..|.
T Consensus 51 ~~Gp~Gv-GKTt~Ar~lAk~L~ 71 (598)
T PRK09111 51 LTGVRGV-GKTTTARILARALN 71 (598)
T ss_pred EECCCCC-CHHHHHHHHHHhhC
Confidence 4566666 89999999999883
No 407
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=25.15 E-value=50 Score=30.27 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|..++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35689999986 79999999988773
No 408
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=25.12 E-value=72 Score=25.63 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 015950 134 LVGVTGSVGKSTTKSMIALALES 156 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~ 156 (397)
+.|-+| .|||++...+..-+..
T Consensus 9 i~G~~G-~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 9 ISGPPG-SGKTTLIKRLARQLNA 30 (131)
T ss_dssp EEE-TT-SSHHHHHHHHHHHHHH
T ss_pred EEcCCC-CCHHHHHHHHHHHhHH
Confidence 344444 4899999988888843
No 409
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=1.1e+02 Score=29.77 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|..-+|..+..+ .. . +.|.+.|-| +|||||.+..|-+-.-+.++++.
T Consensus 83 Nlhf~lek~rm~-n~-e-~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl 131 (424)
T COG5623 83 NLHFFLEKRRMF-NY-E-KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPL 131 (424)
T ss_pred hHHHHHHhhccc-cc-c-cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCce
Confidence 666666666531 11 2 356666666 79999998765544336677664
No 410
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=24.96 E-value=2e+02 Score=27.66 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCCCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+..+|+|+|++ ||||....+...|. ...++.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~-~~~~~~ 135 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLK-DSVPCA 135 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhc-cCCCEE
Confidence 3567899999975 68888877777763 334443
No 411
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=24.89 E-value=52 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|+.++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35799999976 79999999988773
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=24.87 E-value=49 Score=27.82 Aligned_cols=24 Identities=46% Similarity=0.567 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5689999976 79999999887773
No 413
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.79 E-value=57 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35689999986 79999999998874
No 414
>PLN02199 shikimate kinase
Probab=24.78 E-value=1.2e+02 Score=29.30 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 118 LVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 118 L~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|...+..... ..+.+.|.++| ..||||+..+|+..| |+.++
T Consensus 89 Lk~~a~~i~~-~l~~~~I~LIG~~GSGKSTVgr~LA~~L---g~~fI 131 (303)
T PLN02199 89 LKRKAEEVKP-YLNGRSMYLVGMMGSGKTTVGKLMSKVL---GYTFF 131 (303)
T ss_pred HHHHHHHHHH-HcCCCEEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 6666653322 23334455555 569999999999988 55543
No 415
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.73 E-value=1.3e+02 Score=27.64 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=23.5
Q ss_pred CcEEEEcCCC--ChHHHH-HHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTK-SMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~-~~l~~iL~~~g~~v~ 162 (397)
..++.|+|.+ ||||.+ .++...+ ..|.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~ 56 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QNGYSVS 56 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEE
Confidence 4589999975 899995 8888888 5677763
No 416
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=24.64 E-value=47 Score=29.57 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|.|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999976 79999998887763
No 417
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=24.64 E-value=53 Score=30.52 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|+.++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35689999976 79999999998874
No 418
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=24.61 E-value=45 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHH
Q 015950 141 VGKSTTKSMIALAL 154 (397)
Q Consensus 141 nGKTTT~~~l~~iL 154 (397)
+||||++..|.+++
T Consensus 10 CGKTTva~aL~~LF 23 (168)
T PF08303_consen 10 CGKTTVALALSNLF 23 (168)
T ss_pred cCHHHHHHHHHHHc
Confidence 79999999999999
No 419
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=24.33 E-value=49 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999988887773
No 420
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=24.27 E-value=71 Score=33.34 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+|+|.|. .||||.+.+|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999995 68999999999988
No 421
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.27 E-value=57 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.7
Q ss_pred ecCCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 015950 355 SRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385 (397)
Q Consensus 355 ~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~ 385 (397)
.++.+.|+|| .-.|-.++.++++.+++...
T Consensus 116 ~G~rVlIVDD-viaTGgT~~a~~~lv~~aGa 145 (189)
T PRK09219 116 EGDRVLIIDD-FLANGQAALGLIDIIEQAGA 145 (189)
T ss_pred CCCEEEEEee-hhhcChHHHHHHHHHHHCCC
Confidence 3567899999 88999999999999998654
No 422
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=24.25 E-value=53 Score=29.91 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|.| ||||...+|..++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999986 79999999998884
No 423
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=24.19 E-value=90 Score=30.49 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=21.4
Q ss_pred cHHHHHHHhCC---eecccCCCceEEeeCCccccCCCCEEEEecCC
Q 015950 28 TINEIAESVNG---KILKWGPPGIICTDTRILAPNKNQWFFAITGQ 70 (397)
Q Consensus 28 ~l~~l~~~~~~---~~~~~~~i~~i~~dSr~v~~~~g~lFval~G~ 70 (397)
....+...++. .++.++.|+.|.++ .+ +.+|+--.|.
T Consensus 10 ~~~~~~~~l~~~l~~~l~D~~V~eI~iN----~~--~~v~v~~~g~ 49 (323)
T PRK13833 10 LVRKLQDALGDQLCVALDDATVVEIMLN----PD--GKLFIERLGH 49 (323)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEC----CC--CEEEEEECCc
Confidence 34444455544 23445568888887 35 6777765553
No 424
>PRK00023 cmk cytidylate kinase; Provisional
Probab=24.11 E-value=77 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.8
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+|+|+|. .||||++.+|+.-|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999995 69999999999888
No 425
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=24.10 E-value=75 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|.|-| ||||...+|..++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35789999975 89999999999883
No 426
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.09 E-value=51 Score=31.21 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=21.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhC
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~ 157 (397)
..+++|.|-| ||||+..+|..++...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5789999986 8999999999988533
No 427
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=23.98 E-value=72 Score=32.59 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCCC------ChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGTn------GKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+.+.|-||+-| |||||+-=|.+.|...|+++.
T Consensus 49 k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i 88 (554)
T COG2759 49 KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAI 88 (554)
T ss_pred CCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchhe
Confidence 4457889999854 999999999999999998864
No 428
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=23.92 E-value=4.4e+02 Score=24.71 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCEEEEecCCcCCchh---cHHHHHhcCCcEEEEecccCCC--------------CCccEEEEcCCCCccHHHHHHHHHH
Q 015950 61 NQWFFAITGQHFDAHE---FISPELYGKGCVGVIGNQVCNN--------------WDKGFVQVEGNGNVNTLNSLVNMAC 123 (397)
Q Consensus 61 g~lFval~G~~~dgh~---~i~~A~~~~GA~~vv~~~~~~~--------------~~~~~i~v~~~~~~d~~~aL~~la~ 123 (397)
.++++.|.+-. |.|. -+..|-. .|+.+||..+.... ..+|++++. |..+.+.++.+
T Consensus 108 ~~l~lvLd~V~-DP~NlGaIiRtA~a-~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~-----n~~~~~~~~~~ 180 (260)
T COG0566 108 QPLLLVLDGVT-DPHNLGAIIRTADA-FGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVT-----NLARTLLELLK 180 (260)
T ss_pred CCEEEEEecCc-CCcchhhHHhhHHH-hCCCEEEECCCccCCccceeEEecCChheeceeEEEe-----ccHHHHHHHHH
Confidence 47889998876 6564 4677777 99999999764321 157888888 75444444443
Q ss_pred HhhcCCCCCcEEEEcCCC
Q 015950 124 YARNSRFSGVLVGVTGSV 141 (397)
Q Consensus 124 ~~~~p~~~~~vI~VTGTn 141 (397)
.....+||.+.+.
T Consensus 181 -----~~G~~v~~t~~~~ 193 (260)
T COG0566 181 -----EAGFWVVATSLDG 193 (260)
T ss_pred -----HcCeEEEEECCCC
Confidence 2335677777766
No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.89 E-value=2.3e+02 Score=28.76 Aligned_cols=113 Identities=19% Similarity=0.324 Sum_probs=67.8
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEEcCCCCc-CccchhhhhhcccCCCcEEEEeecCCCcchHHhhcccc
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWN-NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t~g~~n-~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i 207 (397)
+.-+|.|.|- -||||+---+++-|.+.+ +|.+-.|--. .++-.-..-+.+..+.-+..-|..+ .++.+..+-.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~---e~I~~~l~~~ 167 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNL---EDIIAELEQE 167 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCH---HHHHHHHHhc
Confidence 4568999996 579998888888884555 8866555311 0111111111122334455556543 2333322337
Q ss_pred CCcEEEEcCCChhhhccC----CCHHHHHHHHHHhcccCCCCcE
Q 015950 208 RPEIRVVLNVGDSHLESL----GSLEDVARAKGEIFQESKLGDV 247 (397)
Q Consensus 208 ~p~iaViTNi~~dHld~~----gs~e~~~~~K~~i~~~~~~~~~ 247 (397)
+|++.||=+|..=|.+.. ||..++.+.-..+.+..+..+.
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 999999999987666654 6788888887777776555444
No 430
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=23.82 E-value=61 Score=28.84 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=20.3
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|-| ||||...+|..++.
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 35689999976 59999999888774
No 431
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.75 E-value=79 Score=29.38 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|.| ||||...+|+.++.
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5689999976 79999999998883
No 432
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=23.72 E-value=54 Score=29.05 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|+|.| ||||...+|+.++
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999986 8999999998887
No 433
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=23.48 E-value=2.9e+02 Score=25.69 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=40.3
Q ss_pred ccHHHHHHHhCCeec----ccCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccC
Q 015950 27 WTINEIAESVNGKIL----KWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC 96 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~----~~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~ 96 (397)
|++++|.+.+.-... .+-+-.|+...+..-.- ..+.+|+.-. .+-+++|++ +||..+|+.++.
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v--~~I~~alD~t----~~vi~~Ai~-~~~dlIitHHP~ 67 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEV--KKVVVAVDAS----ESVADEAVR-LGADLIITHHPL 67 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCccc--CEEEEEecCC----HHHHHHHHH-CCCCEEEEcCcc
Confidence 577788877653221 11124566665322223 5688898544 456899999 999999998754
No 434
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.42 E-value=1.1e+02 Score=29.86 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=23.7
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
+++-+|| -.||||++.-++-.|.+.|.+|
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kv 33 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKV 33 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcE
Confidence 4556665 7899999999999998888776
No 435
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.38 E-value=51 Score=29.58 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 69999999888773
No 436
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=23.32 E-value=63 Score=28.38 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=16.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+|.|.| -.||||.+.+|+.-+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 367777 579999999999865
No 437
>PRK06851 hypothetical protein; Provisional
Probab=23.24 E-value=1.2e+02 Score=30.33 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=26.6
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++.+|| ..||||+..-|...+...|+.|.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve 62 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVE 62 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 46899999 67899999999999978888874
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.19 E-value=58 Score=27.56 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999976 79999998887774
No 439
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=23.18 E-value=3.1e+02 Score=21.53 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 116 NSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
+.+..+...... ...+.+.|+| -.|||++...+...+...+.++
T Consensus 5 ~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 5 EAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 344445443322 2345677777 4689999999988885444444
No 440
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=23.09 E-value=56 Score=29.77 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999999988773
No 441
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=23.05 E-value=91 Score=26.69 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=17.1
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.|.++| -.||||+...|+..|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 466666 469999999999988
No 442
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=23.03 E-value=1.2e+02 Score=29.40 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=33.0
Q ss_pred cEEEEcCCCCccHHHHHHHHHHHhhcCC-CCCcEEEEcC--CCChHHHHHHHHHHHH
Q 015950 102 GFVQVEGNGNVNTLNSLVNMACYARNSR-FSGVLVGVTG--SVGKSTTKSMIALALE 155 (397)
Q Consensus 102 ~~i~v~~~~~~d~~~aL~~la~~~~~p~-~~~~vI~VTG--TnGKTTT~~~l~~iL~ 155 (397)
-+|--+ -..++|..|...+..|. ..++-+.|.| -||||+.. ....+
T Consensus 35 rWIgY~-----~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii---~rF~~ 83 (302)
T PF05621_consen 35 RWIGYP-----RAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMII---ERFRR 83 (302)
T ss_pred CeecCH-----HHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHH---HHHHH
Confidence 356566 77889999998666644 5578888888 68999954 44443
No 443
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=22.95 E-value=63 Score=29.46 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
+..+++|+|-| ||||...+|+.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 35689999976 799999999988843
No 444
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=22.90 E-value=56 Score=29.99 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999976 79999999988773
No 445
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.86 E-value=57 Score=29.77 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..+++|+|-| ||||...+|+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999986 999999999988843
No 446
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=22.78 E-value=75 Score=27.55 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
...+..|+|- .||||+...|..+|-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3467888885 489999999999994
No 447
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.70 E-value=8.4e+02 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=18.4
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+-++|+. ||||++..++..|.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456777765 59999999999993
No 448
>PRK14528 adenylate kinase; Provisional
Probab=22.66 E-value=94 Score=27.39 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.0
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+.|.|+|. .||||.+.+|++-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 45778885 69999999998777
No 449
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=22.45 E-value=57 Score=29.80 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|.| ||||...+|..++.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999988874
No 450
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=22.37 E-value=60 Score=29.68 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999976 79999999988773
No 451
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=22.29 E-value=61 Score=28.98 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=20.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|+.++.
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999999888773
No 452
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=22.24 E-value=65 Score=29.50 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999976 79999999988774
No 453
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=22.21 E-value=68 Score=27.85 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5689999976 79999999988874
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.20 E-value=88 Score=27.90 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|+|-| ||||...+|+.++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999975 7999999998876
No 455
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=22.13 E-value=64 Score=28.96 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999976 79999999988773
No 456
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=22.09 E-value=3.8e+02 Score=28.04 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=54.2
Q ss_pred ccHHHHHHHhCCeecccCC-----CceE--Eee-----CCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecc
Q 015950 27 WTINEIAESVNGKILKWGP-----PGII--CTD-----TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQ 94 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~-----i~~i--~~d-----Sr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~ 94 (397)
.++.+|++.++|+++.... ...+ ..+ .+.+.+ |++.+- |.+.|- +..|++ +|+.++|+..
T Consensus 138 ~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~--~~lvi~--gdr~d~---~~~ai~-~~~~~lIlt~ 209 (546)
T PRK14869 138 TSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE--GDIVIV--GDREDI---QLAAIE-AGVRLLIITG 209 (546)
T ss_pred CCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccC--CCEEEE--cCcHHH---HHHHHH-cCCCEEEECC
Confidence 3788999999998654221 2222 222 224667 887654 777555 446899 9999988765
Q ss_pred cCCC----------CCccEEEEcCCCCccHHHHHHHHHH
Q 015950 95 VCNN----------WDKGFVQVEGNGNVNTLNSLVNMAC 123 (397)
Q Consensus 95 ~~~~----------~~~~~i~v~~~~~~d~~~aL~~la~ 123 (397)
..+. .++|+|.++. |+.++...+..
T Consensus 210 g~~~~~~v~~la~~~~i~ii~t~~----dt~~t~~~l~~ 244 (546)
T PRK14869 210 GAPVSEDVLELAKENGVTVISTPY----DTFTTARLINQ 244 (546)
T ss_pred CCCCCHHHHHHHHhCCCeEEEecc----cHHHHHHHhhc
Confidence 4331 2789998883 67777666553
No 457
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.08 E-value=75 Score=29.30 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 30 KELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccc
Confidence 4689999976 79999999998873
No 458
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.01 E-value=61 Score=29.48 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999988874
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.98 E-value=76 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.4
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
++|+|.|-+ ||||.+.+|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888865 7999888887755
No 460
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=21.93 E-value=1.2e+02 Score=27.24 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=16.7
Q ss_pred EEEEcCCC--ChHHHHHHHHHHHH
Q 015950 134 LVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 134 vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
.|+|+|-+ ||||+...+.+.|.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 68899865 58888887777773
No 461
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=21.84 E-value=67 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=20.5
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|+|.| ||||...+|..++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35689999976 79999999888874
No 462
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=21.82 E-value=64 Score=28.15 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=22.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
..+++|+|-| ||||...+|..++......+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 5689999976 79999999988874333333
No 463
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=21.59 E-value=91 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCCC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~~ 160 (397)
++|-+| .|||+++..|+..+....++
T Consensus 52 LiGppG-~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 52 MIGPTG-VGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred EECCCC-CCHHHHHHHHHHHhCCeEEE
Confidence 445555 48999999999999433333
No 464
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=21.53 E-value=7.2e+02 Score=23.78 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=39.1
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhC--CCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhcc---
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESL--GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR--- 205 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~--g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~--- 205 (397)
..|.|+| ..||||+...|...+... +.++. ++.. +.++. + .......++.+.. .+.+.++.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~-tiEd-------~~El~-~-~~~~~v~~~~~~~-~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVV-IIED-------TRELQ-C-AAPNVVQLRTSDD-AISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEE-EECC-------chhhc-C-CCCCEEEEEecCC-CCCHHHHHHHHh
Confidence 3466777 459999998877776332 34443 3322 11111 1 1234455555432 212222222
Q ss_pred ccCCcEEEEcCCC
Q 015950 206 MARPEIRVVLNVG 218 (397)
Q Consensus 206 ~i~p~iaViTNi~ 218 (397)
-.+||..++.-|.
T Consensus 202 R~~pD~iivGEiR 214 (299)
T TIGR02782 202 RLRPDRIIVGEVR 214 (299)
T ss_pred cCCCCEEEEeccC
Confidence 2589999988876
No 465
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=21.45 E-value=65 Score=28.77 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|+.++.
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999988774
No 466
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=21.42 E-value=87 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|+|-| ||||...+|..++
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999976 7999999998876
No 467
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=21.38 E-value=59 Score=30.41 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.3
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|+.++.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 37 GETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999988874
No 468
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=21.35 E-value=59 Score=31.88 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999986 89999999999884
No 469
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=21.33 E-value=6.2e+02 Score=27.48 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=54.8
Q ss_pred ccHHHHHHHhCCeecccCC-----CceEEee-------CCccccCCCCEEEEecCCcCCchhcHHHHHhcC-----CcEE
Q 015950 27 WTINEIAESVNGKILKWGP-----PGIICTD-------TRILAPNKNQWFFAITGQHFDAHEFISPELYGK-----GCVG 89 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~-----i~~i~~d-------Sr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~-----GA~~ 89 (397)
-++++|++.++++++.+.+ +..+.+= .+.+++ |++.+. +|.|.|- +..|++ . |+++
T Consensus 202 ~t~~~i~~~L~~~vl~~~~~~~~~v~~v~vgAm~~~~~~~~l~~--~~lVIt-~gdR~Di---~l~al~-~~~~~~~~a~ 274 (684)
T PRK05632 202 PRVIDIAKHLGATVLNEGDILTRRVKSVTVCARSIPNMLEHLKP--GSLVVT-PGDRSDV---ILAALL-AAMNGPPIAG 274 (684)
T ss_pred CCHHHHHHHcCCEEEcCcccccceeeeEEEEecchHHHHHhccC--CcEEEe-CCChHHH---HHHHHH-hcccCCCceE
Confidence 3789999999999765422 4444222 345567 999875 7877553 344555 4 6777
Q ss_pred EEecccCCC-------------CCccEEEEcCCCCccHHHHHHHHHHH
Q 015950 90 VIGNQVCNN-------------WDKGFVQVEGNGNVNTLNSLVNMACY 124 (397)
Q Consensus 90 vv~~~~~~~-------------~~~~~i~v~~~~~~d~~~aL~~la~~ 124 (397)
+|..-.... .++|+|.++. |+..+...+.+.
T Consensus 275 lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~~----dT~~ta~~i~~~ 318 (684)
T PRK05632 275 LLLTGGYEPDPRIAKLCEGAFETGLPVLSVDT----NTYQTALRLQSF 318 (684)
T ss_pred EEEcCCCCCCHHHHHHHhhcccCCCCEEEecC----CHHHHHHHHHHh
Confidence 776543210 2689998883 576666666653
No 470
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=21.27 E-value=80 Score=28.14 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5689999986 89999999988874
No 471
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=21.16 E-value=1.7e+02 Score=26.89 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCCCeeeEEeec---CCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEE
Q 015950 345 PVQMRSELLVSR---SGIKIVNDAYNANPISTRAAIDLLKDIACNVVQC 390 (397)
Q Consensus 345 ~~~GR~e~i~~~---~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~ 390 (397)
.+++.|...... ..+.+|||.| .|-..+..+-+.|++-.-.+|.+
T Consensus 170 nl~~aF~~~~~~~~~~~vlLvDDV~-TTGaTl~~~~~~L~~~Ga~~v~~ 217 (225)
T COG1040 170 NLKGAFRLKKGIEEPKNVLLVDDVY-TTGATLKEAAKLLREAGAKRVFV 217 (225)
T ss_pred hccCCeecCCCCCCCCeEEEEeccc-ccHHHHHHHHHHHHHcCCceEEE
Confidence 356666655332 3589999976 79999999999999876554443
No 472
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=21.15 E-value=57 Score=29.20 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=19.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5689999965 79999988887763
No 473
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=21.12 E-value=93 Score=30.33 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.0
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+.|+|+| +.||||.+..|+..+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45788888 568999999998877
No 474
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=21.10 E-value=81 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.6
Q ss_pred EEcCC--CChHHHHHHHHHHH
Q 015950 136 GVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 136 ~VTGT--nGKTTT~~~l~~iL 154 (397)
-+.|- .|||++++.+++.|
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 34554 69999999999998
No 475
>PF13173 AAA_14: AAA domain
Probab=21.02 E-value=1.1e+02 Score=24.95 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=17.5
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
-+++.|+| -.||||+..-+.+-+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999 689999986666554
No 476
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.02 E-value=69 Score=28.92 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999888874
No 477
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.00 E-value=63 Score=29.70 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.3
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999998874
No 478
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=21.00 E-value=1.3e+02 Score=26.23 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEE---eecCCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL---VSRSGIKIVNDAYNANPISTRAAIDLLKDIAC 385 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i---~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~ 385 (397)
+..|.+++..+|.+.--+.+.-. ..|..+.+ ..++.+.+||| -..|-.++..+.+.+++...
T Consensus 68 i~~A~~~a~~l~~p~~~~rK~~k----~~g~~~~~~g~~~g~~VlIVDD-vi~TG~T~~~~~~~l~~~Ga 132 (170)
T PRK13811 68 VPLAVAVSLAAGKPYAIIRKEAK----DHGKAGLIIGDVKGKRVLLVED-VTTSGGSALYGIEQLRAAGA 132 (170)
T ss_pred HHHHHHHHHHHCCCEEEEecCCC----CCCCcceEEcccCCCEEEEEEe-cccccHHHHHHHHHHHHCCC
Confidence 34455666677776432222111 11222222 12467899999 89999999999999998754
No 479
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=20.93 E-value=73 Score=26.59 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=15.1
Q ss_pred EEEcC--CCChHHHHHHHHHHH
Q 015950 135 VGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL 154 (397)
|.++| -.||||++..|+..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 44555 349999999998876
No 480
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=20.92 E-value=1.4e+02 Score=26.68 Aligned_cols=66 Identities=17% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEE-eecCCeEEEEecCCCCHHHHHHHHHHHhccCCC
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL-VSRSGIKIVNDAYNANPISTRAAIDLLKDIACN 386 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i-~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~ 386 (397)
+..|..++..++++.--+.+....+. ..++++.- ..+..+.+||| --.+-.++..+++.+++...+
T Consensus 76 ~~~A~~la~~L~~~~~~~rk~~~~~g-~~~~~~~~~~~g~~VliVDD-vi~tG~Tl~~~~~~l~~~Ga~ 142 (202)
T PRK00455 76 IPLAAAVARALDLPAIFVRKEAKDHG-EGGQIEGRRLFGKRVLVVED-VITTGGSVLEAVEAIRAAGAE 142 (202)
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCC-CCceEEccCCCCCEEEEEec-ccCCcHHHHHHHHHHHHcCCE
Confidence 33456666777776543332222221 12233321 12467889999 788999999999999987543
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.86 E-value=60 Score=27.87 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..+++|.|-| ||||...+|..++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5689999976 899999999888743
No 482
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.81 E-value=76 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
+..+++|+|-| ||||...+|+.++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 35689999976 799999999888743
No 483
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=20.73 E-value=77 Score=28.51 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|.| ||||...+|+.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5689999976 79999888887763
No 484
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=20.69 E-value=71 Score=29.40 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999999988773
No 485
>PRK13949 shikimate kinase; Provisional
Probab=20.67 E-value=1e+02 Score=26.77 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.7
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
-|.|.| -.||||+..+|+..|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 477777 468999999999998
No 486
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=20.66 E-value=2.2e+02 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
-++..|+|-| ||||.-.+|.+|| .|+++
T Consensus 24 s~f~vI~G~NEAGKSTl~sFI~sml--FGfP~ 53 (984)
T COG4717 24 SKFQVIYGENEAGKSTLFSFIHSML--FGFPT 53 (984)
T ss_pred CceEEEecCccccHHHHHHHHHHHH--cCCCC
Confidence 4588899976 9999999999999 67765
No 487
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=20.65 E-value=59 Score=31.14 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..++++.|-| ||||+..+|..++.
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999998874
No 488
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.65 E-value=2.3e+02 Score=22.22 Aligned_cols=56 Identities=13% Similarity=-0.017 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCC-CeeeEEeecCCeEEEEecCCCCHHHHHHHHHH
Q 015950 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ-MRSELLVSRSGIKIVNDAYNANPISTRAAIDL 379 (397)
Q Consensus 313 ~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~-GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~ 379 (397)
.-|.+.+.-.+.+++..|++++++.+.|+.....+ +.+. + .....-||++-.+|+.
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~~L~gi~~~~~~~~~------~-----~~~~S~~D~Ia~~L~~ 93 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIIDQLRGIRCGPSGTVG------G-----SRVTSCPDAIAKALEE 93 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCCccC------C-----CccCcHHHHHHHHHHH
Confidence 34555566667778888999999999998876422 1111 1 2133458888887764
No 489
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.64 E-value=66 Score=29.33 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 69999999988773
No 490
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.59 E-value=70 Score=29.34 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999976 79999999988774
No 491
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=20.58 E-value=71 Score=27.27 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHH
Q 015950 141 VGKSTTKSMIALAL 154 (397)
Q Consensus 141 nGKTTT~~~l~~iL 154 (397)
.||||+..+|+..|
T Consensus 3 sGKStvg~~lA~~L 16 (158)
T PF01202_consen 3 SGKSTVGKLLAKRL 16 (158)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh
Confidence 69999999999999
No 492
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=20.51 E-value=63 Score=28.86 Aligned_cols=24 Identities=46% Similarity=0.462 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|+|-| ||||...+|..++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999988773
No 493
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.48 E-value=1.2e+02 Score=22.49 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 015950 315 LAINACAAAAVATLFGVSLAQVGISLS 341 (397)
Q Consensus 315 n~~N~laAia~a~~lgi~~~~i~~~L~ 341 (397)
.-+|-++|++....||++++.+..-+.
T Consensus 25 lT~NPl~AMa~i~qLGip~eKLQ~lm~ 51 (82)
T PF11212_consen 25 LTQNPLAAMATIQQLGIPQEKLQQLMA 51 (82)
T ss_pred HhhCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346889999999999999998766543
No 494
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.48 E-value=1.2e+03 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=21.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHH--HHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~--~iL~~~g~~v 161 (397)
.+++.|||.| ||||+...+. .+|...|..+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 3578999955 8999987775 4566677655
No 495
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=20.41 E-value=1e+02 Score=31.41 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=16.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 015950 134 LVGVTGSVGKSTTKSMIALALES 156 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~ 156 (397)
++|-|| .|||+++..|+..|..
T Consensus 55 liGp~G-~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 55 MIGPTG-VGKTEIARRLAKLANA 76 (443)
T ss_pred EECCCC-CCHHHHHHHHHHHhCC
Confidence 344444 5899999999999943
No 496
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=20.36 E-value=1e+02 Score=29.98 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=23.1
Q ss_pred cHHHHHHHhCCe---ecccCCCceEEeeCCccccCCCCEEEEecCCc
Q 015950 28 TINEIAESVNGK---ILKWGPPGIICTDTRILAPNKNQWFFAITGQH 71 (397)
Q Consensus 28 ~l~~l~~~~~~~---~~~~~~i~~i~~dSr~v~~~~g~lFval~G~~ 71 (397)
....+.+.++.. ++.++.++.|.++. + +.+|+--.|..
T Consensus 14 ~~~~~~~~~~~~l~~~l~Dp~v~EI~iN~----~--~~V~v~~~g~~ 54 (319)
T PRK13894 14 AKKKLERDMGPELLAALNDPKTVEIMLNA----D--GKLWQERLGEP 54 (319)
T ss_pred HHHHHHHHHhHHHHHHhcCCCceEEEEcC----C--CEEEEEECCcE
Confidence 344444455432 34445688888886 6 78888766643
No 497
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.27 E-value=66 Score=30.79 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..++|+.|-| ||||+..+|..++.
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999976 79999999999884
No 498
>PRK10646 ADP-binding protein; Provisional
Probab=20.26 E-value=2.4e+02 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.9
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+|...|. .||||.++-|...|
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999994 78999988888877
No 499
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=20.24 E-value=3.6e+02 Score=25.38 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcC---CCChHHHHHHHHHHHHhCCCCeEEcCCCCc--C-c----------cchhhhh
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVFQSYGNWN--N-R----------VGVALSL 178 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~~t~g~~n--~-~----------~g~p~~l 178 (397)
++++.+.-...++ .+++-.|-+-| +.||.-|.....+++ +.|..++ |.||.- . + +-.|...
T Consensus 12 r~~v~~~Lp~L~~-~~~~DfVIaNgENaa~G~Git~~~~~~L~-~~GvDvi-T~GNH~wdkkei~~~i~~~~~ilRPaN~ 88 (253)
T PF13277_consen 12 RRAVKEHLPELKE-EYGIDFVIANGENAAGGFGITPKIAEELF-KAGVDVI-TMGNHIWDKKEIFDFIDKEPRILRPANY 88 (253)
T ss_dssp HHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHH-HHT-SEE-E--TTTTSSTTHHHHHHH-SSEE--TTS
T ss_pred HHHHHHHHHHHHh-hcCCCEEEECCcccCCCCCCCHHHHHHHH-hcCCCEE-ecCcccccCcHHHHHHhcCCCcEECCCC
Confidence 4555554444444 56677888887 669999999999999 8899986 677742 1 1 1112222
Q ss_pred hcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCC-CCcEEEEcC
Q 015950 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK-LGDVCVLNA 252 (397)
Q Consensus 179 ~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~-~~~~~vln~ 252 (397)
-.-.++.-+.++|.+ + ..++|+.=+|+--+....+ =+.+--++++.++ +....++..
T Consensus 89 p~~~pG~G~~i~~~~--g------------~kv~ViNl~Gr~fm~~~~~---PF~~~d~~l~~l~~~~~~iiVDF 146 (253)
T PF13277_consen 89 PPGTPGRGYRIFEKN--G------------KKVAVINLMGRVFMPPIDC---PFRAADRLLEELKEETDIIIVDF 146 (253)
T ss_dssp -TT-SSBSEEEEEET--T------------EEEEEEEEE--TTS---S----HHHHHHHHHHH-----SEEEEEE
T ss_pred CCCCCcCcEEEEEEC--C------------EEEEEEECcccccCCCCCC---hHHHHHHHHHhccccCCEEEEEe
Confidence 222467789999983 2 2566777677655544433 3333344444432 233455543
No 500
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=20.21 E-value=61 Score=29.50 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5689999976 79999999887773
Done!