Query 015950
Match_columns 397
No_of_seqs 308 out of 1668
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gg4_A UDP-N-acetylmuramoylala 100.0 3.8E-73 1.3E-77 575.8 41.3 352 27-393 4-359 (452)
2 2am1_A SP protein, UDP-N-acety 100.0 2.3E-72 7.7E-77 570.6 37.1 346 26-393 2-355 (454)
3 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 1E-70 3.5E-75 568.4 32.5 362 14-393 22-419 (535)
4 1e8c_A UDP-N-acetylmuramoylala 100.0 2.3E-69 7.9E-74 554.3 32.8 350 28-393 4-384 (498)
5 2f00_A UDP-N-acetylmuramate--L 100.0 7.7E-49 2.6E-53 401.5 32.6 289 73-393 69-380 (491)
6 1p3d_A UDP-N-acetylmuramate--a 100.0 4E-49 1.4E-53 402.0 29.8 289 73-393 68-374 (475)
7 3hn7_A UDP-N-acetylmuramate-L- 100.0 3.8E-49 1.3E-53 406.2 29.3 290 85-393 79-421 (524)
8 4hv4_A UDP-N-acetylmuramate--L 100.0 4.7E-48 1.6E-52 395.6 31.8 280 86-393 81-383 (494)
9 2x5o_A UDP-N-acetylmuramoylala 100.0 2.2E-49 7.4E-54 400.2 18.6 310 47-393 30-344 (439)
10 1jbw_A Folylpolyglutamate synt 100.0 6.3E-47 2.1E-51 381.1 21.0 261 113-393 24-341 (428)
11 2vos_A Folylpolyglutamate synt 100.0 9.1E-46 3.1E-50 377.7 29.5 268 113-393 45-380 (487)
12 1o5z_A Folylpolyglutamate synt 100.0 4.7E-46 1.6E-50 375.9 22.9 262 113-393 37-350 (442)
13 3lk7_A UDP-N-acetylmuramoylala 100.0 8.1E-46 2.8E-50 375.3 24.5 241 132-393 112-354 (451)
14 1j6u_A UDP-N-acetylmuramate-al 100.0 3.8E-44 1.3E-48 364.5 33.9 256 100-393 95-358 (469)
15 3nrs_A Dihydrofolate:folylpoly 100.0 1.4E-44 4.7E-49 364.7 23.9 265 115-393 35-352 (437)
16 1w78_A FOLC bifunctional prote 100.0 1.5E-43 5.2E-48 355.8 21.7 254 113-393 34-331 (422)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 1.6E-40 5.4E-45 322.9 25.2 208 132-347 108-325 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.2 6.5E-12 2.2E-16 109.2 6.1 60 333-393 11-71 (163)
19 4e79_A UDP-3-O-acylglucosamine 91.2 0.28 9.7E-06 47.1 6.1 88 24-126 5-97 (357)
20 3eh0_A UDP-3-O-[3-hydroxymyris 90.9 0.49 1.7E-05 45.1 7.5 87 26-127 3-92 (341)
21 1rz3_A Hypothetical protein rb 90.2 0.54 1.8E-05 40.9 6.6 48 115-162 4-54 (201)
22 4dzz_A Plasmid partitioning pr 90.2 0.27 9.1E-06 42.5 4.5 31 132-162 1-34 (206)
23 3bfv_A CAPA1, CAPB2, membrane 90.0 0.65 2.2E-05 42.6 7.3 48 115-162 63-115 (271)
24 2g0t_A Conserved hypothetical 89.6 1.2 4E-05 42.7 8.8 106 131-237 168-309 (350)
25 1xjc_A MOBB protein homolog; s 89.6 0.38 1.3E-05 41.2 4.8 32 131-162 3-36 (169)
26 3fwy_A Light-independent proto 89.5 0.31 1.1E-05 46.0 4.7 32 131-162 47-80 (314)
27 3cio_A ETK, tyrosine-protein k 88.8 0.78 2.7E-05 42.8 6.9 48 115-162 85-137 (299)
28 3of5_A Dethiobiotin synthetase 88.7 0.41 1.4E-05 42.9 4.7 32 131-162 3-37 (228)
29 3pmo_A UDP-3-O-[3-hydroxymyris 88.1 0.7 2.4E-05 44.6 6.2 86 27-127 26-114 (372)
30 1byi_A Dethiobiotin synthase; 88.0 0.37 1.3E-05 42.3 3.9 31 133-163 2-35 (224)
31 3la6_A Tyrosine-protein kinase 87.8 0.93 3.2E-05 42.0 6.7 48 115-162 73-125 (286)
32 3ea0_A ATPase, para family; al 86.0 0.57 2E-05 41.6 4.0 32 131-162 3-38 (245)
33 1wcv_1 SOJ, segregation protei 84.4 0.8 2.8E-05 41.3 4.2 32 131-162 5-39 (257)
34 2oze_A ORF delta'; para, walke 84.2 1.5 5E-05 40.4 6.1 49 113-162 18-69 (298)
35 1g3q_A MIND ATPase, cell divis 84.1 0.95 3.2E-05 40.0 4.5 30 133-162 3-35 (237)
36 3fgn_A Dethiobiotin synthetase 83.8 0.96 3.3E-05 41.1 4.5 33 130-162 24-59 (251)
37 1pjq_A CYSG, siroheme synthase 83.3 2 6.8E-05 42.6 6.9 22 134-156 123-145 (457)
38 3c8u_A Fructokinase; YP_612366 82.9 2.5 8.6E-05 36.6 6.7 43 116-158 6-50 (208)
39 2xj4_A MIPZ; replication, cell 82.9 1 3.5E-05 41.4 4.4 30 133-162 5-37 (286)
40 3qxc_A Dethiobiotin synthetase 82.0 1.3 4.4E-05 40.1 4.5 31 132-162 21-54 (242)
41 2px0_A Flagellar biosynthesis 81.6 0.96 3.3E-05 42.2 3.6 32 131-162 104-138 (296)
42 1zu4_A FTSY; GTPase, signal re 81.3 1.3 4.5E-05 41.8 4.5 31 132-162 105-137 (320)
43 2z0h_A DTMP kinase, thymidylat 81.2 1.6 5.4E-05 37.1 4.7 31 134-164 2-34 (197)
44 3end_A Light-independent proto 81.0 1.5 5E-05 40.7 4.7 33 130-162 39-73 (307)
45 3k9g_A PF-32 protein; ssgcid, 80.0 1.4 4.6E-05 39.9 4.0 33 129-162 24-59 (267)
46 1vma_A Cell division protein F 80.0 1.7 6E-05 40.6 4.8 31 132-162 104-136 (306)
47 2ph1_A Nucleotide-binding prot 79.7 1.8 6E-05 39.2 4.7 31 132-162 18-51 (262)
48 1hyq_A MIND, cell division inh 79.6 1.4 4.9E-05 39.5 4.1 30 133-162 3-35 (263)
49 3ez2_A Plasmid partition prote 79.6 1.8 6.3E-05 41.7 5.0 37 126-162 102-147 (398)
50 3q9l_A Septum site-determining 79.5 1.7 5.9E-05 38.7 4.5 30 133-162 3-35 (260)
51 3cwq_A Para family chromosome 79.3 1.7 5.9E-05 37.9 4.3 61 134-195 2-78 (209)
52 3zq6_A Putative arsenical pump 78.6 2 7E-05 40.3 4.9 32 131-162 12-46 (324)
53 3ez9_A Para; DNA binding, wing 78.1 1.1 3.7E-05 43.5 2.9 37 126-162 105-150 (403)
54 2pbr_A DTMP kinase, thymidylat 77.1 2.8 9.5E-05 35.4 4.9 31 134-164 2-34 (195)
55 3ug7_A Arsenical pump-driving 76.8 2.4 8.3E-05 40.3 4.9 34 129-162 22-58 (349)
56 1a7j_A Phosphoribulokinase; tr 76.8 1.4 4.7E-05 40.9 3.0 29 131-159 4-34 (290)
57 1odf_A YGR205W, hypothetical 3 76.7 3.6 0.00012 38.0 5.9 29 129-157 28-58 (290)
58 1np6_A Molybdopterin-guanine d 76.2 3 0.0001 35.5 4.8 31 132-162 6-38 (174)
59 1nn5_A Similar to deoxythymidy 75.6 2.5 8.7E-05 36.3 4.3 31 132-162 9-41 (215)
60 3dm5_A SRP54, signal recogniti 75.4 4.7 0.00016 39.7 6.6 31 132-162 100-132 (443)
61 2f1r_A Molybdopterin-guanine d 73.6 2.3 8E-05 36.0 3.5 31 132-162 2-34 (171)
62 2jeo_A Uridine-cytidine kinase 73.2 2.4 8.1E-05 37.9 3.6 23 132-154 25-49 (245)
63 2wwf_A Thymidilate kinase, put 73.0 3.1 0.00011 35.7 4.2 32 131-162 9-42 (212)
64 3asz_A Uridine kinase; cytidin 72.8 2.1 7.1E-05 37.0 3.0 25 131-155 5-31 (211)
65 2pez_A Bifunctional 3'-phospho 72.3 4.1 0.00014 34.1 4.7 31 132-162 5-37 (179)
66 3kl4_A SRP54, signal recogniti 72.3 3.4 0.00012 40.7 4.7 31 132-162 97-129 (433)
67 2yvu_A Probable adenylyl-sulfa 72.2 4 0.00014 34.5 4.6 33 130-162 11-45 (186)
68 1nks_A Adenylate kinase; therm 71.8 3.6 0.00012 34.5 4.2 30 133-162 2-33 (194)
69 1uj2_A Uridine-cytidine kinase 71.6 2.2 7.6E-05 38.3 3.0 39 113-154 6-46 (252)
70 3pg5_A Uncharacterized protein 71.3 2 6.8E-05 41.1 2.7 31 132-162 1-34 (361)
71 3tqc_A Pantothenate kinase; bi 70.9 5.5 0.00019 37.5 5.6 40 116-155 74-117 (321)
72 3fkq_A NTRC-like two-domain pr 70.7 3.5 0.00012 39.5 4.3 33 130-162 141-176 (373)
73 3b9q_A Chloroplast SRP recepto 69.8 4.3 0.00015 37.8 4.6 31 132-162 100-132 (302)
74 2if2_A Dephospho-COA kinase; a 69.4 2.3 7.7E-05 36.5 2.4 26 133-162 2-29 (204)
75 4edh_A DTMP kinase, thymidylat 67.4 5.6 0.00019 34.9 4.6 33 132-164 6-40 (213)
76 2obn_A Hypothetical protein; s 67.1 4.8 0.00017 38.3 4.4 172 57-238 73-289 (349)
77 3e70_C DPA, signal recognition 66.8 5.8 0.0002 37.4 4.9 32 131-162 128-161 (328)
78 1sq5_A Pantothenate kinase; P- 66.8 3.5 0.00012 38.3 3.3 26 130-155 78-105 (308)
79 3tr0_A Guanylate kinase, GMP k 66.5 3.6 0.00012 35.1 3.1 23 132-154 7-31 (205)
80 3hjn_A DTMP kinase, thymidylat 66.5 6 0.0002 34.2 4.6 31 135-165 3-35 (197)
81 2i3b_A HCR-ntpase, human cance 65.1 4.4 0.00015 34.9 3.4 26 134-159 3-30 (189)
82 1cp2_A CP2, nitrogenase iron p 65.1 4.2 0.00014 36.5 3.4 30 133-162 2-33 (269)
83 3p32_A Probable GTPase RV1496/ 64.9 12 0.00043 35.3 6.9 34 129-162 76-111 (355)
84 3ake_A Cytidylate kinase; CMP 64.7 4.5 0.00015 34.5 3.4 22 133-154 3-26 (208)
85 2og2_A Putative signal recogni 64.6 6 0.00021 37.8 4.6 31 132-162 157-189 (359)
86 3lv8_A DTMP kinase, thymidylat 64.6 6.5 0.00022 35.2 4.5 36 129-164 24-62 (236)
87 2grj_A Dephospho-COA kinase; T 64.3 4.5 0.00015 34.9 3.3 28 132-162 12-41 (192)
88 1jjv_A Dephospho-COA kinase; P 63.7 4 0.00014 35.0 2.9 26 133-162 3-30 (206)
89 1uf9_A TT1252 protein; P-loop, 63.7 3.9 0.00013 34.7 2.8 30 129-162 5-36 (203)
90 3kb2_A SPBC2 prophage-derived 63.1 5.2 0.00018 32.8 3.4 23 132-154 1-25 (173)
91 1ye8_A Protein THEP1, hypothet 62.7 5.5 0.00019 33.8 3.5 21 134-154 2-24 (178)
92 3aez_A Pantothenate kinase; tr 62.6 5.4 0.00018 37.3 3.7 27 130-156 88-116 (312)
93 2afh_E Nitrogenase iron protei 62.5 5.1 0.00017 36.5 3.5 31 132-162 2-34 (289)
94 1zuh_A Shikimate kinase; alpha 62.4 5.4 0.00018 32.9 3.4 29 131-162 6-36 (168)
95 2yhs_A FTSY, cell division pro 62.1 7 0.00024 39.1 4.6 31 132-162 293-325 (503)
96 4eun_A Thermoresistant glucoki 61.9 6.2 0.00021 33.7 3.8 24 131-154 28-53 (200)
97 3a4m_A L-seryl-tRNA(SEC) kinas 61.6 8.2 0.00028 34.7 4.7 31 132-162 4-36 (260)
98 1ls1_A Signal recognition part 60.7 7.7 0.00026 35.8 4.4 31 132-162 98-130 (295)
99 3uie_A Adenylyl-sulfate kinase 60.6 7.9 0.00027 33.1 4.2 30 131-160 24-55 (200)
100 3lnc_A Guanylate kinase, GMP k 60.1 4.4 0.00015 35.6 2.5 23 132-154 27-52 (231)
101 2v3c_C SRP54, signal recogniti 60.0 24 0.00083 34.4 8.1 31 132-162 99-131 (432)
102 1rj9_A FTSY, signal recognitio 59.8 9.4 0.00032 35.5 4.9 32 131-162 101-134 (304)
103 4tmk_A Protein (thymidylate ki 58.9 9.7 0.00033 33.4 4.5 33 132-164 3-38 (213)
104 1knq_A Gluconate kinase; ALFA/ 58.3 8.1 0.00028 32.0 3.8 26 129-154 5-32 (175)
105 3a00_A Guanylate kinase, GMP k 58.3 4.4 0.00015 34.3 2.1 23 133-155 2-26 (186)
106 2woo_A ATPase GET3; tail-ancho 58.0 7 0.00024 36.7 3.7 25 138-162 27-51 (329)
107 2xxa_A Signal recognition part 57.5 11 0.00036 37.1 5.0 31 132-162 100-133 (433)
108 1e6c_A Shikimate kinase; phosp 57.5 6.3 0.00022 32.4 3.0 22 133-154 3-26 (173)
109 3tlx_A Adenylate kinase 2; str 57.2 14 0.00049 32.7 5.5 40 115-154 12-53 (243)
110 3kjh_A CO dehydrogenase/acetyl 56.8 3.5 0.00012 36.3 1.2 25 138-162 8-32 (254)
111 2j41_A Guanylate kinase; GMP, 56.8 5.4 0.00019 33.9 2.5 23 132-154 6-30 (207)
112 2vo1_A CTP synthase 1; pyrimid 56.4 9.8 0.00033 34.8 4.1 33 130-162 21-57 (295)
113 1j8m_F SRP54, signal recogniti 56.0 17 0.00057 33.6 5.9 31 132-162 98-130 (297)
114 3ld9_A DTMP kinase, thymidylat 55.4 8.1 0.00028 34.2 3.4 33 131-163 20-55 (223)
115 1cke_A CK, MSSA, protein (cyti 54.7 8.7 0.0003 33.2 3.5 22 133-154 6-29 (227)
116 4hlc_A DTMP kinase, thymidylat 54.5 11 0.00038 32.7 4.1 32 133-165 3-36 (205)
117 2plr_A DTMP kinase, probable t 54.1 11 0.00039 31.9 4.1 30 132-162 4-35 (213)
118 3io3_A DEHA2D07832P; chaperone 54.0 9.2 0.00031 36.3 3.8 31 132-162 18-52 (348)
119 3syl_A Protein CBBX; photosynt 53.8 13 0.00043 33.9 4.7 25 134-159 72-96 (309)
120 2p67_A LAO/AO transport system 53.4 22 0.00074 33.4 6.3 33 129-161 53-87 (341)
121 1ukz_A Uridylate kinase; trans 53.4 8.4 0.00029 32.8 3.1 25 130-154 13-39 (203)
122 1kht_A Adenylate kinase; phosp 52.1 14 0.00048 30.7 4.3 26 133-158 4-31 (192)
123 3v9p_A DTMP kinase, thymidylat 52.0 11 0.00039 33.3 3.9 34 131-164 24-63 (227)
124 3iqw_A Tail-anchored protein t 51.9 9.3 0.00032 36.0 3.4 25 138-162 24-48 (334)
125 4ehx_A Tetraacyldisaccharide 4 51.4 7.4 0.00025 36.5 2.6 30 129-158 33-66 (315)
126 2pt5_A Shikimate kinase, SK; a 51.4 11 0.00036 30.9 3.3 21 134-154 2-24 (168)
127 1kag_A SKI, shikimate kinase I 50.9 8 0.00027 31.8 2.5 22 133-154 5-28 (173)
128 2qt1_A Nicotinamide riboside k 50.4 5.4 0.00018 34.2 1.4 24 131-154 20-45 (207)
129 2iyv_A Shikimate kinase, SK; t 50.1 9 0.00031 32.0 2.8 22 133-154 3-26 (184)
130 2qm8_A GTPase/ATPase; G protei 49.9 16 0.00053 34.4 4.6 32 130-161 53-86 (337)
131 2c95_A Adenylate kinase 1; tra 49.7 11 0.00037 31.6 3.3 23 132-154 9-33 (196)
132 3tau_A Guanylate kinase, GMP k 49.6 9.4 0.00032 32.9 2.8 24 131-154 7-32 (208)
133 1q3t_A Cytidylate kinase; nucl 49.0 13 0.00046 32.5 3.8 25 130-154 14-40 (236)
134 2c5m_A CTP synthase; cytidine 48.6 16 0.00053 33.3 4.0 32 131-162 22-57 (294)
135 1qf9_A UMP/CMP kinase, protein 48.6 12 0.00042 31.1 3.4 23 132-154 6-30 (194)
136 3pzx_A Formate--tetrahydrofola 48.2 17 0.00059 36.2 4.6 34 129-162 54-93 (557)
137 2jaq_A Deoxyguanosine kinase; 48.1 13 0.00044 31.3 3.5 21 134-154 2-24 (205)
138 1zak_A Adenylate kinase; ATP:A 47.5 8.9 0.00031 33.2 2.4 19 135-154 11-29 (222)
139 1xx6_A Thymidine kinase; NESG, 47.4 20 0.0007 30.7 4.6 33 130-162 6-40 (191)
140 1y63_A LMAJ004144AAA protein; 47.4 14 0.00049 30.9 3.6 24 131-154 9-34 (184)
141 1m7g_A Adenylylsulfate kinase; 47.4 15 0.00051 31.5 3.8 31 131-161 24-57 (211)
142 4eaq_A DTMP kinase, thymidylat 47.2 17 0.00058 32.0 4.2 33 131-164 25-59 (229)
143 1znw_A Guanylate kinase, GMP k 47.2 11 0.00039 32.2 3.0 24 131-154 19-44 (207)
144 2j37_W Signal recognition part 47.1 17 0.00059 36.3 4.6 31 132-162 101-133 (504)
145 2ffh_A Protein (FFH); SRP54, s 46.9 16 0.00054 35.7 4.3 31 132-162 98-130 (425)
146 3upu_A ATP-dependent DNA helic 46.9 21 0.00073 34.9 5.3 44 113-159 29-74 (459)
147 2woj_A ATPase GET3; tail-ancho 46.9 16 0.00055 34.6 4.3 26 137-162 25-52 (354)
148 2f6r_A COA synthase, bifunctio 46.7 12 0.00041 34.1 3.2 27 132-162 75-103 (281)
149 3t61_A Gluconokinase; PSI-biol 46.6 14 0.00047 31.4 3.4 23 132-154 18-42 (202)
150 3vaa_A Shikimate kinase, SK; s 45.9 16 0.00055 31.0 3.8 23 132-154 25-49 (199)
151 2www_A Methylmalonic aciduria 45.8 42 0.0014 31.5 7.0 31 131-161 73-105 (349)
152 2vli_A Antibiotic resistance p 45.6 9.2 0.00032 31.7 2.1 24 131-154 4-29 (183)
153 2eyu_A Twitching motility prot 45.4 15 0.0005 33.2 3.5 26 132-157 25-52 (261)
154 4i1u_A Dephospho-COA kinase; s 45.3 14 0.00048 32.4 3.3 29 130-162 7-37 (210)
155 1tev_A UMP-CMP kinase; ploop, 45.0 15 0.00051 30.6 3.3 23 132-154 3-27 (196)
156 1gtv_A TMK, thymidylate kinase 44.7 6 0.0002 33.9 0.7 29 134-162 2-32 (214)
157 2bwj_A Adenylate kinase 5; pho 44.5 13 0.00046 31.1 3.0 23 132-154 12-36 (199)
158 2v54_A DTMP kinase, thymidylat 44.4 11 0.00039 31.8 2.5 29 132-162 4-34 (204)
159 1lvg_A Guanylate kinase, GMP k 44.4 13 0.00044 31.8 2.9 22 133-154 5-28 (198)
160 2w0m_A SSO2452; RECA, SSPF, un 44.3 22 0.00074 30.4 4.4 31 132-162 23-55 (235)
161 2cdn_A Adenylate kinase; phosp 44.2 20 0.00067 30.4 4.0 24 131-154 19-44 (201)
162 1vht_A Dephospho-COA kinase; s 42.3 16 0.00055 31.4 3.2 27 132-162 4-32 (218)
163 1dek_A Deoxynucleoside monopho 42.0 15 0.00052 32.9 3.0 22 133-154 2-25 (241)
164 1kgd_A CASK, peripheral plasma 41.9 17 0.00057 30.4 3.2 24 131-154 4-29 (180)
165 3lw7_A Adenylate kinase relate 41.1 21 0.00071 28.8 3.6 26 133-162 2-29 (179)
166 2kjq_A DNAA-related protein; s 41.0 31 0.0011 27.9 4.7 32 131-162 35-68 (149)
167 2w58_A DNAI, primosome compone 40.5 62 0.0021 27.0 6.7 48 115-162 35-86 (202)
168 1via_A Shikimate kinase; struc 40.3 17 0.00057 30.0 2.9 22 133-154 5-28 (175)
169 3czq_A Putative polyphosphate 40.3 14 0.00047 34.4 2.5 51 114-165 69-121 (304)
170 3jvv_A Twitching mobility prot 40.1 20 0.00069 34.0 3.7 29 133-161 124-155 (356)
171 3n70_A Transport activator; si 39.8 75 0.0026 25.1 6.8 26 135-160 27-54 (145)
172 1x6v_B Bifunctional 3'-phospho 39.5 32 0.0011 35.4 5.4 34 130-163 50-85 (630)
173 2gks_A Bifunctional SAT/APS ki 39.4 36 0.0012 34.3 5.7 30 132-161 372-403 (546)
174 3cm0_A Adenylate kinase; ATP-b 38.5 19 0.00066 29.8 3.0 22 133-154 5-28 (186)
175 4e22_A Cytidylate kinase; P-lo 38.2 19 0.00066 32.0 3.1 24 131-154 26-51 (252)
176 3trf_A Shikimate kinase, SK; a 38.0 24 0.00082 29.2 3.6 23 132-154 5-29 (185)
177 3kta_A Chromosome segregation 37.8 19 0.00065 29.8 2.9 22 133-154 27-50 (182)
178 1g8f_A Sulfate adenylyltransfe 37.7 30 0.001 34.6 4.7 37 119-155 382-420 (511)
179 1aky_A Adenylate kinase; ATP:A 36.9 26 0.0009 30.1 3.7 23 132-154 4-28 (220)
180 1qhx_A CPT, protein (chloramph 36.5 21 0.00071 29.4 2.9 22 133-154 4-27 (178)
181 3ec2_A DNA replication protein 36.4 62 0.0021 26.5 5.9 48 114-161 19-70 (180)
182 1ihu_A Arsenical pump-driving 36.3 25 0.00084 35.6 3.9 31 132-162 8-40 (589)
183 1kyq_A Met8P, siroheme biosynt 35.9 21 0.00073 32.6 3.0 20 134-154 161-181 (274)
184 1yrb_A ATP(GTP)binding protein 35.5 30 0.001 30.4 3.9 30 132-162 14-45 (262)
185 1htw_A HI0065; nucleotide-bind 35.5 24 0.00082 29.2 3.0 25 130-154 31-57 (158)
186 3do6_A Formate--tetrahydrofola 35.4 36 0.0012 33.8 4.6 35 129-163 40-80 (543)
187 1tue_A Replication protein E1; 34.5 75 0.0026 27.8 6.2 41 113-154 40-82 (212)
188 2orw_A Thymidine kinase; TMTK, 33.7 36 0.0012 28.7 4.0 30 132-162 3-35 (184)
189 3nva_A CTP synthase; rossman f 33.6 37 0.0013 34.1 4.5 31 132-162 3-37 (535)
190 3iij_A Coilin-interacting nucl 33.6 31 0.0011 28.4 3.5 23 132-154 11-35 (180)
191 3lfu_A DNA helicase II; SF1 he 33.4 25 0.00084 35.8 3.4 28 130-158 23-51 (647)
192 2rhm_A Putative kinase; P-loop 33.4 25 0.00087 29.1 3.0 23 132-154 5-29 (193)
193 2b8t_A Thymidine kinase; deoxy 33.1 46 0.0016 29.2 4.7 33 130-162 10-44 (223)
194 2ewv_A Twitching motility prot 33.1 28 0.00095 33.2 3.5 26 132-157 136-163 (372)
195 3igf_A ALL4481 protein; two-do 31.2 16 0.00055 35.0 1.4 24 139-162 11-34 (374)
196 3oig_A Enoyl-[acyl-carrier-pro 31.0 1.1E+02 0.0036 26.9 7.0 88 130-220 5-98 (266)
197 3bos_A Putative DNA replicatio 30.7 1.2E+02 0.0042 25.5 7.2 46 115-162 37-84 (242)
198 3fb4_A Adenylate kinase; psych 30.3 34 0.0012 29.1 3.3 21 134-154 2-24 (216)
199 1cr0_A DNA primase/helicase; R 30.3 52 0.0018 29.6 4.8 32 131-162 34-68 (296)
200 4a0g_A Adenosylmethionine-8-am 29.7 36 0.0012 36.2 4.0 32 131-162 33-72 (831)
201 3gdg_A Probable NADP-dependent 29.7 58 0.002 28.6 4.9 88 129-219 17-111 (267)
202 2r8r_A Sensor protein; KDPD, P 29.6 38 0.0013 30.1 3.5 28 135-162 11-38 (228)
203 3nwj_A ATSK2; P loop, shikimat 29.4 33 0.0011 30.7 3.1 23 132-154 48-72 (250)
204 3ney_A 55 kDa erythrocyte memb 29.0 43 0.0015 28.9 3.7 27 128-154 15-43 (197)
205 2j9r_A Thymidine kinase; TK1, 29.0 69 0.0024 28.0 5.0 34 129-162 25-60 (214)
206 2h92_A Cytidylate kinase; ross 28.8 28 0.00096 29.7 2.5 22 133-154 4-27 (219)
207 2olj_A Amino acid ABC transpor 28.7 19 0.00066 32.5 1.4 24 131-154 49-74 (263)
208 1l8q_A Chromosomal replication 28.7 1E+02 0.0035 28.0 6.5 46 117-162 22-69 (324)
209 3o38_A Short chain dehydrogena 28.6 84 0.0029 27.6 5.8 85 130-219 20-111 (266)
210 1s96_A Guanylate kinase, GMP k 28.1 36 0.0012 29.6 3.1 25 130-154 14-40 (219)
211 3b85_A Phosphate starvation-in 27.4 38 0.0013 29.3 3.1 24 132-156 22-47 (208)
212 1ly1_A Polynucleotide kinase; 26.9 39 0.0013 27.5 3.0 20 133-152 3-24 (181)
213 1b0u_A Histidine permease; ABC 26.9 22 0.00075 32.1 1.4 25 131-155 31-57 (262)
214 3r20_A Cytidylate kinase; stru 26.4 48 0.0016 29.4 3.6 23 132-154 9-33 (233)
215 2ocp_A DGK, deoxyguanosine kin 26.3 30 0.001 30.3 2.2 24 132-155 2-27 (241)
216 1zp6_A Hypothetical protein AT 26.2 35 0.0012 28.2 2.6 24 131-154 8-33 (191)
217 2qz4_A Paraplegin; AAA+, SPG7, 26.1 1.1E+02 0.0038 26.5 6.1 42 113-154 13-63 (262)
218 2jnb_A NHP2-like protein 1; sp 25.4 2.5E+02 0.0085 22.7 7.5 45 100-155 93-137 (144)
219 2yz2_A Putative ABC transporte 25.4 24 0.00081 31.9 1.4 24 132-155 33-58 (266)
220 3hws_A ATP-dependent CLP prote 25.3 25 0.00085 33.0 1.6 21 134-154 53-75 (363)
221 3ff4_A Uncharacterized protein 25.1 89 0.003 24.5 4.6 63 131-194 3-68 (122)
222 2nq2_C Hypothetical ABC transp 25.0 23 0.0008 31.7 1.3 24 132-155 31-56 (253)
223 4ag6_A VIRB4 ATPase, type IV s 24.9 42 0.0014 31.8 3.1 30 132-162 38-67 (392)
224 1ji0_A ABC transporter; ATP bi 24.7 24 0.00081 31.3 1.2 23 132-154 32-56 (240)
225 1vpl_A ABC transporter, ATP-bi 24.6 25 0.00087 31.5 1.4 24 131-154 40-65 (256)
226 1g6h_A High-affinity branched- 24.5 24 0.00082 31.6 1.2 24 132-155 33-58 (257)
227 1m8p_A Sulfate adenylyltransfe 24.5 60 0.002 32.9 4.3 30 132-161 396-428 (573)
228 3hdt_A Putative kinase; struct 24.1 46 0.0016 29.1 3.0 27 132-161 14-42 (223)
229 2pcj_A ABC transporter, lipopr 24.0 35 0.0012 29.8 2.2 23 132-154 30-54 (224)
230 2zu0_C Probable ATP-dependent 24.0 51 0.0017 29.6 3.4 24 131-154 45-70 (267)
231 3ch4_B Pmkase, phosphomevalona 24.0 51 0.0017 28.6 3.2 24 131-154 10-35 (202)
232 3dl0_A Adenylate kinase; phosp 23.9 41 0.0014 28.6 2.6 26 134-162 2-29 (216)
233 2d2e_A SUFC protein; ABC-ATPas 23.8 48 0.0016 29.4 3.2 22 132-153 29-52 (250)
234 1zd8_A GTP:AMP phosphotransfer 23.7 38 0.0013 29.2 2.4 23 132-154 7-31 (227)
235 2bdt_A BH3686; alpha-beta prot 23.6 46 0.0016 27.6 2.8 20 133-152 3-24 (189)
236 1nij_A Hypothetical protein YJ 23.5 34 0.0012 31.6 2.1 24 131-154 3-28 (318)
237 3rd5_A Mypaa.01249.C; ssgcid, 23.4 2.2E+02 0.0075 25.2 7.7 83 129-219 13-96 (291)
238 2onk_A Molybdate/tungstate ABC 23.4 51 0.0018 29.1 3.2 23 133-155 25-49 (240)
239 3m3h_A OPRT, oprtase, orotate 23.3 26 0.00089 31.2 1.2 63 321-388 102-168 (234)
240 1kon_A Protein YEBC, YEBC; alp 23.3 2.9E+02 0.0098 24.7 8.1 69 319-387 52-126 (249)
241 2v9p_A Replication protein E1; 23.3 61 0.0021 29.9 3.8 24 131-154 125-150 (305)
242 2ihy_A ABC transporter, ATP-bi 23.2 27 0.00091 31.9 1.3 24 132-155 47-72 (279)
243 2bbw_A Adenylate kinase 4, AK4 23.2 61 0.0021 28.3 3.7 23 132-154 27-51 (246)
244 1mw7_A Hypothetical protein HP 23.2 3.2E+02 0.011 24.2 8.3 70 319-388 47-121 (240)
245 1njg_A DNA polymerase III subu 23.1 1.3E+02 0.0045 25.0 5.9 39 116-155 30-70 (250)
246 3d8b_A Fidgetin-like protein 1 23.1 34 0.0012 32.1 2.1 42 113-154 91-141 (357)
247 2ixe_A Antigen peptide transpo 23.0 28 0.00095 31.5 1.4 24 132-155 45-70 (271)
248 2ged_A SR-beta, signal recogni 22.6 80 0.0027 25.8 4.2 38 113-150 28-68 (193)
249 2ze6_A Isopentenyl transferase 22.6 56 0.0019 28.9 3.3 22 133-154 2-25 (253)
250 3qks_A DNA double-strand break 22.6 65 0.0022 27.5 3.6 24 132-155 23-48 (203)
251 3be4_A Adenylate kinase; malar 22.6 49 0.0017 28.3 2.9 28 132-162 5-34 (217)
252 2p5t_B PEZT; postsegregational 22.4 45 0.0015 29.5 2.6 24 131-154 31-56 (253)
253 2bjv_A PSP operon transcriptio 22.4 58 0.002 28.7 3.4 28 134-161 31-60 (265)
254 1ak2_A Adenylate kinase isoenz 22.2 67 0.0023 27.8 3.7 23 132-154 16-40 (233)
255 1in4_A RUVB, holliday junction 21.9 94 0.0032 28.6 4.9 24 131-154 50-75 (334)
256 1lw7_A Transcriptional regulat 21.8 46 0.0016 31.2 2.8 24 132-155 170-195 (365)
257 2qor_A Guanylate kinase; phosp 21.8 45 0.0015 28.2 2.4 24 131-154 11-36 (204)
258 3euj_A Chromosome partition pr 21.8 52 0.0018 32.6 3.1 25 133-157 30-56 (483)
259 2qi9_C Vitamin B12 import ATP- 21.7 30 0.001 30.9 1.3 24 132-155 26-51 (249)
260 2pjz_A Hypothetical protein ST 21.6 43 0.0015 30.2 2.3 23 132-154 30-54 (263)
261 3d3q_A TRNA delta(2)-isopenten 21.4 48 0.0016 31.3 2.7 22 133-154 8-31 (340)
262 2ehv_A Hypothetical protein PH 21.0 88 0.003 26.8 4.3 21 131-151 29-51 (251)
263 3dez_A OPRT, oprtase, orotate 20.9 26 0.00089 31.4 0.7 64 320-388 113-180 (243)
264 3fdi_A Uncharacterized protein 20.9 50 0.0017 28.2 2.5 27 132-161 6-34 (201)
265 2r44_A Uncharacterized protein 20.6 37 0.0013 31.2 1.7 22 132-154 49-70 (331)
266 2npi_A Protein CLP1; CLP1-PCF1 20.5 22 0.00074 35.1 0.1 29 131-159 137-167 (460)
267 1mv5_A LMRA, multidrug resista 20.5 52 0.0018 29.0 2.6 24 132-155 28-53 (243)
268 1vdm_A Purine phosphoribosyltr 20.5 73 0.0025 25.6 3.4 33 356-389 83-115 (153)
269 1p9r_A General secretion pathw 20.4 70 0.0024 31.0 3.7 30 132-161 167-198 (418)
270 2xb4_A Adenylate kinase; ATP-b 20.4 68 0.0023 27.6 3.4 26 134-162 2-29 (223)
271 2d59_A Hypothetical protein PH 20.3 2.8E+02 0.0097 21.9 7.0 30 133-162 23-53 (144)
272 1sgw_A Putative ABC transporte 20.2 45 0.0015 29.0 2.1 23 132-154 35-59 (214)
273 4g1u_C Hemin import ATP-bindin 20.2 54 0.0019 29.5 2.7 25 132-156 37-63 (266)
274 1f2t_A RAD50 ABC-ATPase; DNA d 20.0 84 0.0029 25.3 3.6 24 132-155 23-48 (149)
No 1
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.8e-73 Score=575.78 Aligned_cols=352 Identities=29% Similarity=0.414 Sum_probs=307.4
Q ss_pred ccHHHHHHHhCCeeccc-CCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCCccEEE
Q 015950 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~ 105 (397)
|++++|++.+++.+... ..|+++++|||+++| |++|+|++|.++|||+|+++|++ +||.++|++++.+ +++|+|.
T Consensus 4 ~~l~~i~~~~~~~~~~~~~~i~~i~~Dsr~v~~--g~lf~al~G~~~dgh~f~~~a~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (452)
T 1gg4_A 4 VTLSQLTDILNGELQGADITLDAVTTDTRKLTP--GCLFVALKGERFDAHDFADQAKA-GGAGALLVSRPLD-IDLPQLI 79 (452)
T ss_dssp EEHHHHHHHTTEEEESCCCEESCEESCGGGCCT--TCEEECCBCSSCBTTTTHHHHHH-TTCCEEEESSCCS-CSSCEEE
T ss_pred CcHHHHHHHhCCEEeCCCceEEEEEEeCCCcCC--CcEEEEeCCCCCCHHHHHHHHHH-cCCEEEEECCCcC-CCCCEEE
Confidence 79999999999886542 248999999999999 99999999999999999999999 9999999998654 2689999
Q ss_pred EcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCC
Q 015950 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (397)
Q Consensus 106 v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~ 185 (397)
|+ |++++|++|+.+++. ..+.++|+||||||||||++||+++|++.| +++.+.|++|+++|.|+++++++.++
T Consensus 80 v~-----~~~~~l~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~t~g~~n~~ig~p~t~~~~~~~~ 152 (452)
T 1gg4_A 80 VK-----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452)
T ss_dssp ES-----CHHHHHHHHHHHHHH-HSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred EC-----CHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeeccccccCCcchhHHHHcCCCCC
Confidence 99 999999999996654 356889999999999999999999997777 67789999999999999999888899
Q ss_pred cEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhh--cCC
Q 015950 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVP 263 (397)
Q Consensus 186 ~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~--~~~ 263 (397)
+++|||+|+++.+++++++++++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|||+...+ ...
T Consensus 153 d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~ 232 (452)
T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhc
Confidence 999999999999999999888899999999999999999999999999999999988888999999999988776 322
Q ss_pred CCCcEEEEeccC-CcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 015950 264 RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342 (397)
Q Consensus 264 ~~~~vi~~g~~~-~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~ 342 (397)
..++++||.+. .+|+++.+ +.....+..|.+...+..+.+++|++|.||++|+++|++++..+|++++.|.++|++
T Consensus 233 -~~~~~~~g~~~~~~d~~~~~--~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~ 309 (452)
T 1gg4_A 233 -SRKVWRFSPNAANSDFTATN--IHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN 309 (452)
T ss_dssp -TSEEEEECSSCTTCSBEEEE--EEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred -CCCEEEEeCCCCCCcEEEEE--EEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36899999865 57898888 877777788888654333378999999999999999999999999999999999999
Q ss_pred CCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 343 ~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
|+++|||||++...+++++|+|||||||+|++++|+++++++ +|+++||.
T Consensus 310 ~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~-~~~i~V~G 359 (452)
T 1gg4_A 310 LKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP-GYRVLVVG 359 (452)
T ss_dssp CCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS-SEEEEEEC
T ss_pred CCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc-CCEEEEEC
Confidence 999999999998767899999999999999999999999886 66676663
No 2
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=2.3e-72 Score=570.64 Aligned_cols=346 Identities=25% Similarity=0.366 Sum_probs=309.4
Q ss_pred CccHHHHHHHhCCeecc-----cCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCCCC
Q 015950 26 IWTINEIAESVNGKILK-----WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD 100 (397)
Q Consensus 26 ~~~l~~l~~~~~~~~~~-----~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~~~ 100 (397)
+|++++|++.++|.+ . +..|+++++|||+++| |++|+|++|. +|||+|+++|++ +||.++|++++.+ +
T Consensus 2 ~~~~~~i~~~~~~~~-~~~~~~~~~i~~i~~Dsr~v~~--g~lF~al~G~-~dgh~~~~~a~~-~Ga~~vv~~~~~~--~ 74 (454)
T 2am1_A 2 KLTIHEIAQVVGAKN-DISIFEDTQLEKAEFDSRLIGT--GDLFVPLKGA-RDGHDFIETAFE-NGAAVTLSEKEVS--N 74 (454)
T ss_dssp CCBHHHHHHHHTCSS-CSTTSCCCBCCCEESCGGGCCT--TCEECCCBSS-SBGGGGHHHHHH-HTCSEEEESSCCC--S
T ss_pred CCcHHHHHHHhCCcc-cCCCccCceeeeEEEeCCCCCC--CCEEEEccCC-cchHHHHHHHHH-CCCEEEEECCCCC--C
Confidence 479999999999876 3 1248999999999999 9999999999 999999999999 9999999998654 6
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhc
Q 015950 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180 (397)
Q Consensus 101 ~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~ 180 (397)
+|+|.|+ |++++|++|+.+++. ..+.++|+||||||||||++||+++|++.| ++..+.|++|+++|.|+++++
T Consensus 75 ~p~i~v~-----~~~~al~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~s~g~~n~~ig~p~t~~~ 147 (454)
T 2am1_A 75 HPYILVD-----DVLTAFQSLASYYLE-KTTVDVFAVTGSNGKTTTKDMLAHLLSTRY-KTYKTQGNYNNEIGLPYTVLH 147 (454)
T ss_dssp SCEEECS-----CHHHHHHHHHHHHHH-HHCCEEEEEECCCSSSCHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHHT
T ss_pred CCEEEEC-----CHHHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeecCCccCcccchHHHHhc
Confidence 8999999 999999999996553 236789999999999999999999997777 577899999999999999999
Q ss_pred ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhh
Q 015950 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260 (397)
Q Consensus 181 ~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~ 260 (397)
++.+++++|||+|+++.+++++++++++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|| +...+
T Consensus 148 ~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~ 226 (454)
T 2am1_A 148 MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADP-IVEDY 226 (454)
T ss_dssp CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGG
T ss_pred CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHH
Confidence 88899999999999999999999888899999999999999999999999999999999988888999999999 77766
Q ss_pred cCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 015950 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340 (397)
Q Consensus 261 ~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L 340 (397)
... .+++++||.+..+|+ .+ +.....+..|.+...+. .+++|++|.||++|+++|++++..+|++++.|.++|
T Consensus 227 ~~~-~~~~~~~g~~~~~d~--~~--i~~~~~~~~~~~~~~~~--~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L 299 (454)
T 2am1_A 227 LPI-DKKVVRFGQGAELEI--TD--LVERKDSLTFKANFLEQ--ALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAF 299 (454)
T ss_dssp CCS-SSEEEEESTTSSBCE--EE--EEECSSCEEEEETTCSS--EEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHG
T ss_pred Hhc-CCcEEEEeCCCCCce--ee--eEEeCCceEEEEEecCc--EEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 633 368999998766777 56 77777778888764322 688999999999999999999999999999999999
Q ss_pred cCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCC---CeEEEEEe
Q 015950 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIAC---NVVQCKWR 393 (397)
Q Consensus 341 ~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~---~rv~~v~~ 393 (397)
++|+++|||||++...+++++|||||||||+|++++|++++++++ +|+++||.
T Consensus 300 ~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G 355 (454)
T 2am1_A 300 QHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLA 355 (454)
T ss_dssp GGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEE
T ss_pred HhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEEC
Confidence 999999999999987567889999999999999999999998865 78888775
No 3
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=1e-70 Score=568.45 Aligned_cols=362 Identities=20% Similarity=0.209 Sum_probs=304.8
Q ss_pred CcceecCCCCCCCccHHHHHHHhCCeecc---------cCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhc
Q 015950 14 SKTTFRCPSNSPIWTINEIAESVNGKILK---------WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYG 84 (397)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~ 84 (397)
+.+..| |.+++.|++++|++.+++.+.. +..|++|++|||+|+| |+||||++|+++|||+|+++|++
T Consensus 22 ~~~~~~-~~~m~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~- 97 (535)
T 2wtz_A 22 APTGLR-PNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSP--GDLFAALTGSTTHGARHVGDAIA- 97 (535)
T ss_dssp ----CC-CSCCCCCBHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCT--TEEEEECBCSSCBGGGGHHHHHH-
T ss_pred CccccC-CcccccccHHHHHhhccccccccccccccCCCcceeeEEecCCcCCC--CCEEEEeccccccHHHHHHHHHH-
Confidence 455567 8888778999999999986531 2349999999999999 99999999999999999999999
Q ss_pred CCcEEEEecccC----CC-CCccEEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCC
Q 015950 85 KGCVGVIGNQVC----NN-WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLG 158 (397)
Q Consensus 85 ~GA~~vv~~~~~----~~-~~~~~i~v~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g 158 (397)
+||.++|++++. .. +++|+|.|+ |++++|+.|++ ++++|+.++++|+||||||||||++||+++|++.|
T Consensus 98 ~GA~avv~~~~~~~~~~~~~~~~~i~v~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G 172 (535)
T 2wtz_A 98 RGAVAVLTDPAGVAEIAGRAAVPVLVHP-----APRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAG 172 (535)
T ss_dssp TTCCEEEECHHHHHHHCSCCSSCEEECS-----SSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEecCcccccccCCCceEEEEC-----CHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCC
Confidence 999999998741 11 168999999 99999999999 66777778999999999999999999999999999
Q ss_pred CCeEEcCCCCcCccc---hhhhh------------hc-ccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhh
Q 015950 159 VNVFQSYGNWNNRVG---VALSL------------IG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHL 222 (397)
Q Consensus 159 ~~v~~t~g~~n~~~g---~p~~l------------~~-~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHl 222 (397)
++++ +.|+.++.++ +|.++ .. .+.+++++|||+| ++.+++.++.. ++|+++|||||+.||+
T Consensus 173 ~~~g-~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHl 249 (535)
T 2wtz_A 173 RVAG-LIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS-SHALALGRVDG-TRFAVGAFTNLSRDHL 249 (535)
T ss_dssp CCEE-EESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CCEEEEEECCCCSCCT
T ss_pred CCEE-EECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECC-Ccccccccccc-CCcCEEEEcCCChHHh
Confidence 8874 4555544433 44332 22 2689999999999 67767788876 7999999999999999
Q ss_pred ccCCCHHHHHHHHHHhcccCC--CCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCc-ceEEEeceEEec-CCeEEEEEe
Q 015950 223 ESLGSLEDVARAKGEIFQESK--LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG-GLGVQVVLE 298 (397)
Q Consensus 223 d~~gs~e~~~~~K~~i~~~~~--~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~-d~~~~~~~i~~~-~~~~~~~~~ 298 (397)
|+|||+|+|+++|++||+.++ +++.+|+|.|||+...+.... .++++||.+..+ |+++.+ +... ..+..|.+.
T Consensus 250 d~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~-~~v~~~g~~~~~~d~~~~~--i~~~~~~g~~f~~~ 326 (535)
T 2wtz_A 250 DFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA-ADAITVSAADRPAHWRATD--VAPTDAGGQQFTAI 326 (535)
T ss_dssp TTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH-SSCEEEESSSSCCSEEEEE--EEEETTTEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhc-CCEEEEecCCCcCcEEEEE--EEEcCCCCeEEEEE
Confidence 999999999999999998765 678999999999987776211 168999987666 898888 8776 677888886
Q ss_pred ec-CeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHH
Q 015950 299 KE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377 (397)
Q Consensus 299 ~~-~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l 377 (397)
.. +....+++|++|.||++|+++|++++..+|++++.|.++|++|+ ++||||++...+++++|+| |||||+||+++|
T Consensus 327 ~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~-~~gR~e~v~~~~~~~viiD-yahNP~s~~aal 404 (535)
T 2wtz_A 327 DPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVD-YAHKPEALRSVL 404 (535)
T ss_dssp CTTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECCSSCSSEEEEE-CCCSHHHHHHHH
T ss_pred eCCceEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCC-CCCceEEEEcCCCcEEEEE-CCCCHHHHHHHH
Confidence 54 23237899999999999999999999999999999999999999 9999999986557889999 999999999999
Q ss_pred HHHhccCCCeEEEEEe
Q 015950 378 DLLKDIACNVVQCKWR 393 (397)
Q Consensus 378 ~~l~~~~~~rv~~v~~ 393 (397)
++++ ++++|+++||.
T Consensus 405 ~~l~-~~~~r~i~V~G 419 (535)
T 2wtz_A 405 TTLA-HPDRRLAVVFG 419 (535)
T ss_dssp HTTC-CSSSCEEEEEC
T ss_pred HHhh-CCCCcEEEEEC
Confidence 9999 76677887774
No 4
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.3e-69 Score=554.34 Aligned_cols=350 Identities=19% Similarity=0.211 Sum_probs=293.0
Q ss_pred cHHHHHHHhCCeecccCCCceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCCC--------C
Q 015950 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--------W 99 (397)
Q Consensus 28 ~l~~l~~~~~~~~~~~~~i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~~--------~ 99 (397)
++++|++.+... -.+..|++|++|||+|+| |+||||++|+++|||+|+++|++ +||.++|+++.... .
T Consensus 4 ~~~~l~~~~~~~-~~~~~i~~v~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~avv~~~~~~~~~~e~~~~~ 79 (498)
T 1e8c_A 4 NLRDLLAPWVPD-APSRALREMTLDSRVAAA--GDLFVAVVGHQADGRRYIPQAIA-QGVAAIIAEAKDEATDGEIREMH 79 (498)
T ss_dssp BHHHHHTTTCTT-CCCCBCCCEESCGGGCCT--TCEEEECBCSSCBGGGGHHHHHH-TTCSEEEEECTTTCCTTCEEEET
T ss_pred hHHHHHhhcccC-CCCceeeeEEeeCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEcCccccccccccccC
Confidence 467776544310 002358999999999999 99999999999999999999999 99999999975311 1
Q ss_pred CccEEEEcCCCCccHHHHHHHHHH-HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcCCCCcCccchh-
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGVA- 175 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~g~~n~~~g~p- 175 (397)
++|+|.|+ |++++|+.|+. ++++|+.++++|+||||||||||++||+++|++.|++++ +|.++.++..+.|
T Consensus 80 ~~~~i~V~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~ 154 (498)
T 1e8c_A 80 GVPVIYLS-----QLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPT 154 (498)
T ss_dssp TEEEEEET-----THHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCC
T ss_pred CccEEEEC-----CHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeec
Confidence 58999999 99999999999 667788889999999999999999999999999999863 4444433333333
Q ss_pred -------hh----hhcc-cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCC
Q 015950 176 -------LS----LIGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243 (397)
Q Consensus 176 -------~~----l~~~-~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~ 243 (397)
.+ +..+ +.+++++|||+| ++.+++.++.. ++|+++|||||+.||+|+|||+|+|+++|++||+. +
T Consensus 155 ~~t~~~~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~ 231 (498)
T 1e8c_A 155 ENTTGSAVDVQHELAGLVDQGATFCAMEVS-SHGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-H 231 (498)
T ss_dssp SSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-S
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEcC-Cchhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-C
Confidence 12 2223 788999999999 66666677776 79999999999999999999999999999999987 6
Q ss_pred CCcEEEEcCCCHhHHhhcCCCCC---cEEEEeccCCc---ceEEEeceEEecCCeEEEEEeec-CeEEEEEeCCChHHHH
Q 015950 244 LGDVCVLNADDPLVANLTVPRGV---RKVFFGWRRGC---DVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLA 316 (397)
Q Consensus 244 ~~~~~vln~Dd~~~~~~~~~~~~---~vi~~g~~~~~---d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~~n~ 316 (397)
+++.+|+|.|||+...+...... ++++||.+..+ |+++.+ +.....+..|.+... +. +.+.+|++|.||+
T Consensus 232 ~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~~~~~~d~~~~~--~~~~~~g~~f~~~~~~~~-~~~~l~l~G~hnv 308 (498)
T 1e8c_A 232 HCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE--VNYHDSGATIRFSSSWGD-GEIESHLMGAFNV 308 (498)
T ss_dssp BCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEE--EEECSSCEEEEEEETTCC-EEEEECSCSHHHH
T ss_pred CCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCCCCCcCCEEEEE--EEEcCCceEEEEEECCce-EEEEecCCcHHHH
Confidence 67899999999998877622112 78889976656 898888 887777888888654 33 3789999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 317 INACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 317 ~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
+|+++|++++..+|++++.|.++|++|++++||||++...++++||+| |||||+||+++|+++++++++|+++||.
T Consensus 309 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G 384 (498)
T 1e8c_A 309 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFG 384 (498)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 999999999999999999999999999999999999986557899999 9999999999999999886667888774
No 5
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=7.7e-49 Score=401.46 Aligned_cols=289 Identities=21% Similarity=0.276 Sum_probs=234.7
Q ss_pred CchhcHHHHHhcCCcEEEEecccCCC--C--------CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCC
Q 015950 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~~~~--~--------~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnG 142 (397)
+||.+ +.+ +||.+||+++..+. | ++|++.+. +. ++..++. .++|+||||||
T Consensus 69 ~g~~~--~~~--~~a~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~-----~~------l~~~~~~----~~vI~VTGTnG 129 (491)
T 2f00_A 69 FNHRP--ENV--RDASVVVVSSAISADNPEIVAAHEARIPVIRRA-----EM------LAELMRF----RHGIAIAGTHG 129 (491)
T ss_dssp SSCCG--GGG--TTCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHTT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHHcC----CCEEEEECCCC
Confidence 46665 234 58999999986542 1 67888777 43 3333333 58999999999
Q ss_pred hHHHHHHHHHHHHhCCCCe-EEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhh
Q 015950 143 KSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (397)
Q Consensus 143 KTTT~~~l~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dH 221 (397)
||||++||+++|++.|+++ ..+.|+.+ .++.+.. ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 130 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 199 (491)
T 2f00_A 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK-AAGVHAR----LGHGRYLIAEADESDAS-----FLHLQPMVAIVTNIEADH 199 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCeec-ccccccc----CCCCCEEEEEeCCCccc-----hhcCCCCEEEEcCCChhh
Confidence 9999999999999999873 33445554 3444332 25789999999976652 124799999999999999
Q ss_pred hccC-CCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeec
Q 015950 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (397)
Q Consensus 222 ld~~-gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 300 (397)
+|+| +|+|+|+++|.++|+.+++++.+|+|.|||+...+.....+++++||.+..+|+++.+ +.....+..|.+...
T Consensus 200 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~~~~~~~ 277 (491)
T 2f00_A 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVED--YQQIGPQGHFTLLRQ 277 (491)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECT
T ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEE--EEEcCCceEEEEEEC
Confidence 9999 8999999999999999888999999999999888763223689999987777898888 777777778877542
Q ss_pred -CeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeec--------CC-eEEEEecCCCCH
Q 015950 301 -REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR--------SG-IKIVNDAYNANP 370 (397)
Q Consensus 301 -~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~--------~~-~~vi~Dsyahnp 370 (397)
+....++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++... ++ ++||+| |||||
T Consensus 278 ~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp 356 (491)
T 2f00_A 278 DKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHP 356 (491)
T ss_dssp TSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSH
T ss_pred CceEEEEEEccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCH
Confidence 22237899999999999999999999999999999999999999999999999762 27 899999 99999
Q ss_pred HHHHHHHHHHhcc-CCCeEEEEEe
Q 015950 371 ISTRAAIDLLKDI-ACNVVQCKWR 393 (397)
Q Consensus 371 ~s~~~~l~~l~~~-~~~rv~~v~~ 393 (397)
+++++++++++++ +++|++++|+
T Consensus 357 ~~~~a~l~al~~~~~~~~i~~v~g 380 (491)
T 2f00_A 357 TEVDATIKAARAGWPDKNLVMLFQ 380 (491)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEC
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEC
Confidence 9999999999986 5588998885
No 6
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=4e-49 Score=402.04 Aligned_cols=289 Identities=21% Similarity=0.275 Sum_probs=233.5
Q ss_pred CchhcHHHHHhcCCcEEEEecccCCC--C--------CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCC
Q 015950 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (397)
Q Consensus 73 dgh~~i~~A~~~~GA~~vv~~~~~~~--~--------~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnG 142 (397)
+||.+ +.+ +||.+||+++..+. | ++|++.+. +. ++...+. .++|+||||||
T Consensus 68 ~g~~~--~~~--~~a~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~-----~~------l~~~~~~----~~vI~VTGTnG 128 (475)
T 1p3d_A 68 IGHAE--EHI--EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRA-----QM------LAEIMRF----RHGIAVAGTHG 128 (475)
T ss_dssp ESCCG--GGG--TTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHHT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHhcC----CCEEEEECCCC
Confidence 36665 234 58999999986542 1 67888776 43 3333333 47999999999
Q ss_pred hHHHHHHHHHHHHhCCCCe-EEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhh
Q 015950 143 KSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (397)
Q Consensus 143 KTTT~~~l~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dH 221 (397)
||||++||+++|++.|+++ ..+.|+.+ .++.+.. ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 129 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 198 (475)
T 1p3d_A 129 KTTTTAMISMIYTQAKLDPTFVNGGLVK-SAGKNAH----LGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDH 198 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCccc-ccccccc----cCCCCEEEEEecCCcCc-----cccccCCEEEEcCCChhh
Confidence 9999999999999999873 33445554 3444332 25789999999976642 224799999999999999
Q ss_pred hccC-CCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeec
Q 015950 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (397)
Q Consensus 222 ld~~-gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 300 (397)
+|+| +|+|+|+++|.++|+.+++++.+|+|.|||+...+......++++||.+..+|+++.+ +.....+..|.+...
T Consensus 199 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~ 276 (475)
T 1p3d_A 199 MDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIED--YEQTGFQGHYTVICP 276 (475)
T ss_dssp GGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECT
T ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEE--EEEcCCceEEEEEEC
Confidence 9999 8999999999999999888999999999998877762112689999987777898888 777777778887543
Q ss_pred -CeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeec----CCeEEEEecCCCCHHHHHH
Q 015950 301 -REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR----SGIKIVNDAYNANPISTRA 375 (397)
Q Consensus 301 -~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~----~~~~vi~Dsyahnp~s~~~ 375 (397)
+....++++++|+||++|+++|++++..+|++++.|.++|++|++++||||++... ++++||+| |||||+++++
T Consensus 277 ~~~~~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a 355 (475)
T 1p3d_A 277 NNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGV 355 (475)
T ss_dssp TCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHH
T ss_pred CCeEEEEEEcCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHH
Confidence 22237899999999999999999999999999999999999999999999999763 27899999 9999999999
Q ss_pred HHHHHhcc-CCCeEEEEEe
Q 015950 376 AIDLLKDI-ACNVVQCKWR 393 (397)
Q Consensus 376 ~l~~l~~~-~~~rv~~v~~ 393 (397)
++++++++ +++|++++|+
T Consensus 356 ~l~al~~~~~~~~i~~v~g 374 (475)
T 1p3d_A 356 TIKAAREGWGDKRIVMIFQ 374 (475)
T ss_dssp HHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHhhcCCCeEEEEEC
Confidence 99999985 5578888875
No 7
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=3.8e-49 Score=406.21 Aligned_cols=290 Identities=17% Similarity=0.111 Sum_probs=223.9
Q ss_pred CCcEEEEecccCCC--C--------CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHH
Q 015950 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 85 ~GA~~vv~~~~~~~--~--------~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL 154 (397)
.++..||.++.++. | ++|++.-. + .++... ....++|+||||||||||++||+++|
T Consensus 79 ~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~-----e------~l~~~~---~~~~~vIaVTGTnGKTTTt~li~~iL 144 (524)
T 3hn7_A 79 PAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGP-----Q------FLSEQV---LQSRHVIAVAGTHGKTTTTTMLAWIL 144 (524)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHH-----H------HHHHHT---GGGSEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHH-----H------HHHHHH---hccCcEEEEECCCCHHHHHHHHHHHH
Confidence 46777777776542 1 57777433 1 122221 12367999999999999999999999
Q ss_pred HhCCCCeEE----------cCCCCcCccchhhhhhccc------CCCcEEEEeecCCCcchHHhhccc--cCCcEEEEcC
Q 015950 155 ESLGVNVFQ----------SYGNWNNRVGVALSLIGID------RAVDIAVLEMGMSGKGEILELARM--ARPEIRVVLN 216 (397)
Q Consensus 155 ~~~g~~v~~----------t~g~~n~~~g~p~~l~~~~------~~~~~~VlE~~~~~~~~~~~~~~~--i~p~iaViTN 216 (397)
++.|+++.. |.+|+|+.+|.|..+...+ .+++++|+|+|+++.+.+.++..+ ++|+++||||
T Consensus 145 ~~~G~~~~~~iGg~~~~~~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTN 224 (524)
T 3hn7_A 145 HYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNN 224 (524)
T ss_dssp HHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECC
T ss_pred HHcCCCceEEECCEeccccCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcC
Confidence 999987632 3344556677776443221 356899999998776554443333 6999999999
Q ss_pred CChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhc-CCCCCcEEEEecc--------------------C
Q 015950 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWR--------------------R 275 (397)
Q Consensus 217 i~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~-~~~~~~vi~~g~~--------------------~ 275 (397)
|++||||+|||+|+|+++|.++|+.+++++.+|+|.|||....+. .....++++||.+ .
T Consensus 225 I~~DHLd~~gs~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
T 3hn7_A 225 LEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAEN 304 (524)
T ss_dssp CCCC------CHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------C
T ss_pred CChHHccccCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCC
Confidence 999999999999999999999999998899999999999988775 2222578999975 2
Q ss_pred CcceEEEeceEEecCCeEEEEEeecCe---EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeE
Q 015950 276 GCDVRLVAAQVANGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352 (397)
Q Consensus 276 ~~d~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~ 352 (397)
.+++++.+ +. .++..|.+...+. ...++++++|.||++|+++|++++..+|++++.|.++|++|++++||||+
T Consensus 305 ~~d~~~~~--i~--~~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~ 380 (524)
T 3hn7_A 305 SSDWQAEL--IS--ADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMEL 380 (524)
T ss_dssp CCSEEEEE--EE--TTTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEE
T ss_pred CCcEEEEE--EE--CCceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCCCCceEEE
Confidence 56788877 64 3566777765433 23789999999999999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEecCCCCHHHHHHHHHHHhcc-CCCeEEEEEe
Q 015950 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDI-ACNVVQCKWR 393 (397)
Q Consensus 353 i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~-~~~rv~~v~~ 393 (397)
+...+++++|+| |||||+|+++++++++++ +++|+++||+
T Consensus 381 ~~~~~g~~vi~D-~ahnp~~~~a~l~~l~~~~~~~r~i~V~g 421 (524)
T 3hn7_A 381 IGDVNDILVFDD-FAHHPTAITTTLDGAKKKLADRRLWAIIE 421 (524)
T ss_dssp EEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEecCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 986688999999 789999999999999987 4578888886
No 8
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=4.7e-48 Score=395.60 Aligned_cols=280 Identities=21% Similarity=0.287 Sum_probs=227.7
Q ss_pred CcEEEEecccCCC----------CCccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHH
Q 015950 86 GCVGVIGNQVCNN----------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (397)
Q Consensus 86 GA~~vv~~~~~~~----------~~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~ 155 (397)
++..||+++.++. .++|++.- .+.| +.+.+. .++||||||||||||++||+++|+
T Consensus 81 ~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~--------~e~l---~~~~~~----~~~IaVTGTnGKTTTt~ml~~iL~ 145 (494)
T 4hv4_A 81 DASVVVVSTAISADNPEIVAAREARIPVIRR--------AEML---AELMRY----RHGIAVAGTHGKTTTTAMLSSIYA 145 (494)
T ss_dssp TCSEEEECTTSCTTCHHHHHHHHTTCCEEEH--------HHHH---HHHHTT----SEEEEEECSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEEcH--------HHHH---HHHhcC----CCEEEEecCCChHHHHHHHHHHHH
Confidence 6778888876543 15676622 2222 333332 469999999999999999999999
Q ss_pred hCCCCe-EEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccC-CCHHHHHH
Q 015950 156 SLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVAR 233 (397)
Q Consensus 156 ~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~-gs~e~~~~ 233 (397)
+.|+++ ....|+.+ .+|.+.. + .+.+++|+|+|+++.. ...++|+++|||||++||+|+| +|+|+|++
T Consensus 146 ~~g~~~~~~~gg~~~-~~g~~~~---~-~~~d~~VlE~~e~~~s-----~~~~~P~iaVITNI~~DHld~~G~t~e~~a~ 215 (494)
T 4hv4_A 146 EAGLDPTFVNGGLVK-AAGTHAR---L-GSSRYLIAEADESDAS-----FLHLQPMVAIVTNIEADHMDTYQGDFENLKQ 215 (494)
T ss_dssp HTTCCCEEEEEEEET-TTTEEEE---C-CSSSEEEEECCCGGGG-----GGGCCCSEEEECCCCCSSCCSSTTHHHHHHH
T ss_pred hcCCCCEEEECCccc-ccccccc---c-CCCcEEEEEccccccc-----cccccCCEEEEcCCCHHHhhhhccCHHHHHH
Confidence 999863 33333333 3454432 2 4689999999976541 1357999999999999999999 88999999
Q ss_pred HHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecC-eEEEEEeCCCh
Q 015950 234 AKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER-EMVKFVIPSPG 312 (397)
Q Consensus 234 ~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~l~G 312 (397)
+|.+|++.+++++.+|+|.|||....+......++++||.+..+|+++.+ +.....+..|.+...+ ....++++++|
T Consensus 216 aK~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~~~~~~~~~l~l~G 293 (494)
T 4hv4_A 216 TFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIAS--YRQEGPQGHFTLRRQDKPLIEVTLNAPG 293 (494)
T ss_dssp HHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEE--EEEETTEEEEEEECTTSCCEEEEESSCS
T ss_pred HHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEE--EEEeCCEEEEEEEECCceEEEEEecCCc
Confidence 99999999888999999999999988873223689999998888999988 8877888888886542 12378999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeec---------CCeEEEEecCCCCHHHHHHHHHHHhcc
Q 015950 313 LHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---------SGIKIVNDAYNANPISTRAAIDLLKDI 383 (397)
Q Consensus 313 ~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~---------~~~~vi~Dsyahnp~s~~~~l~~l~~~ 383 (397)
+||++|+++|++++..+|++++.|.++|++|++++||||++... ++++||+| |||||++++++++++++.
T Consensus 294 ~hnv~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~ 372 (494)
T 4hv4_A 294 RHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAG 372 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999764 48999999 999999999999999975
Q ss_pred -CCCeEEEEEe
Q 015950 384 -ACNVVQCKWR 393 (397)
Q Consensus 384 -~~~rv~~v~~ 393 (397)
+++|+++||+
T Consensus 373 ~~~~rii~V~g 383 (494)
T 4hv4_A 373 WPDKRIVMLFQ 383 (494)
T ss_dssp CTTSEEEEEEC
T ss_pred cCCCeEEEEEc
Confidence 5679999986
No 9
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=2.2e-49 Score=400.21 Aligned_cols=310 Identities=23% Similarity=0.254 Sum_probs=236.0
Q ss_pred ceEEeeCCccccCCCCEEEEecCCcCC-chhcHHHHHhcCCcEEEEecccCCCCCccEEEE--cCCCCccHHHHHHHHHH
Q 015950 47 GIICTDTRILAPNKNQWFFAITGQHFD-AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMAC 123 (397)
Q Consensus 47 ~~i~~dSr~v~~~~g~lFval~G~~~d-gh~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~v--~~~~~~d~~~aL~~la~ 123 (397)
.-..+|+|...+ +..|++ +|.+++ ||.+ .++++ |+.+||+++..+. +.|.+.+ + +...++.+++.
T Consensus 30 ~v~~~D~~~~~~--~~~~l~-~G~~~~~g~~~-~~~~~--~~d~vV~s~gi~~-~~p~~~~a~~-----~~~~v~~~~~~ 97 (439)
T 2x5o_A 30 TPRVMDTRMTPP--GLDKLP-EAVERHTGSLN-DEWLM--AADLIVASPGIAL-AHPSLSAAAD-----AGIEIVGDIEL 97 (439)
T ss_dssp CCEEEESSSSCT--TGGGSC-TTSCEEESSCC-HHHHH--TCSEEEECTTSCT-TCHHHHHHHH-----TTCEEECHHHH
T ss_pred EEEEEECCCCcc--hhHHhh-CCCEEEECCCc-HHHhc--cCCEEEeCCCCCC-CCHHHHHHHH-----CCCcEEEHHHH
Confidence 446799999999 888888 899986 7755 66776 7889999887642 2233322 2 22223344444
Q ss_pred HhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhh
Q 015950 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (397)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~ 203 (397)
+++. .+.++|+||||||||||++||+++|++.|+++. +.|| +|.|++... ..+.+++|+|+|+ +++++
T Consensus 98 ~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~-~~gn----ig~~~~~~~-~~~~d~~VlE~~~---~~l~~- 165 (439)
T 2x5o_A 98 FCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG-VGGN----IGLPALMLL-DDECELYVLELSS---FQLET- 165 (439)
T ss_dssp HHHH--CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE-EEES----SSBCHHHHC-CTTCCEEEEECCH---HHHHT-
T ss_pred HHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEE-Eecc----cCHHHHHHh-CCCCCEEEEECCc---hhhcc-
Confidence 4444 347899999999999999999999999999875 5565 677765442 2356999999986 24555
Q ss_pred ccccCCcEEEEcCCChhhhccC-CCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCcceEEE
Q 015950 204 ARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLV 282 (397)
Q Consensus 204 ~~~i~p~iaViTNi~~dHld~~-gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~ 282 (397)
++.++|+++|||||++||+|+| +|+|+|+++|++||+. ++.+|+|.|||....+... .+++++||.+.. ++ .
T Consensus 166 ~~~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~-~~--~ 238 (439)
T 2x5o_A 166 TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DERCVSFGVNMG-DY--H 238 (439)
T ss_dssp CCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEETTCGGGSCSCCC-SSCCEEECSSSS-SE--E
T ss_pred cccCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEeCCCHHHHHHhhc-CCcEEEEeCCCc-Cc--C
Confidence 4568999999999999999999 8899999999999964 6899999999988776532 368899997532 22 1
Q ss_pred eceEEecCCeEEEEEeecCeEE-EEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEE
Q 015950 283 AAQVANGGLGVQVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKI 361 (397)
Q Consensus 283 ~~~i~~~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~v 361 (397)
+ +... ++ .+.+......+ .++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++++
T Consensus 239 ~--~~~~-~~-~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~f~~~~gR~e~~~~~~~~~v 314 (439)
T 2x5o_A 239 L--NHQQ-GE-TWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRW 314 (439)
T ss_dssp E--EEET-TE-EEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTEEE
T ss_pred c--EEEE-CC-EEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEEE
Confidence 2 2222 12 23332111111 146899999999999999999999999999999999999999999999987678999
Q ss_pred EEecCCCCHHHHHHHHHHHhccCCCeEEEEEe
Q 015950 362 VNDAYNANPISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 362 i~Dsyahnp~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
|+|+|||||+|+++++++++. .+|+++|+.
T Consensus 315 i~Ds~a~np~a~~~al~~l~~--~~~~i~v~g 344 (439)
T 2x5o_A 315 INDSKATNVGSTEAALNGLHV--DGTLHLLLG 344 (439)
T ss_dssp EECTTCCSHHHHHHHHTTCCC--SSCEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHhCCc--CCCEEEEEc
Confidence 999999999999999998876 356666663
No 10
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=6.3e-47 Score=381.09 Aligned_cols=261 Identities=23% Similarity=0.285 Sum_probs=209.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE--c--CCCCcCc-----------------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--S--YGNWNNR----------------- 171 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~--t--~g~~n~~----------------- 171 (397)
+++++|+.|+. |..+.++|+||||||||||++||+++|++.|++|+. + ..++|++
T Consensus 24 ~~~~~l~~lg~----p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~ 99 (428)
T 1jbw_A 24 RILTLLHALGN----PQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAV 99 (428)
T ss_dssp HHHHHHHHTTC----GGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCC----chhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHH
Confidence 89898887765 445578999999999999999999999999999862 3 1334322
Q ss_pred ---------cc-----hhhhhhcc----------cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-
Q 015950 172 ---------VG-----VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG- 226 (397)
Q Consensus 172 ---------~g-----~p~~l~~~----------~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g- 226 (397)
+| .|++++++ +.++|++|+|+|+++.. + .+++++|+++|||||+.||+|+||
T Consensus 100 ~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~--d-~t~~~~p~vaviTnI~~DHld~~g~ 176 (428)
T 1jbw_A 100 AFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDT--D-STNVITPVVSVLTEVALDHQKLLGH 176 (428)
T ss_dssp HHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT--S-TTCSCCCSEEEECCCCSCCHHHHCS
T ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCccc--c-ccccCCCCEEEECcCcHhhhhhhCC
Confidence 23 45565544 78999999999986543 3 467789999999999999999999
Q ss_pred CHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcC----CCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCe
Q 015950 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (397)
Q Consensus 227 s~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~ 302 (397)
|+|+|+++|++||+ +++.+|+|.||+....+.. ..++++++||. |+++.. ......+..|.+...+.
T Consensus 177 t~e~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~--~~~~~~~~~~~~~~~~~ 247 (428)
T 1jbw_A 177 TITAIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR----DFSVPK--AKLHGWGQRFTYEDQDG 247 (428)
T ss_dssp SHHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TEEEEE--EEECSSSEEEEEEETTE
T ss_pred CHHHHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCc----cceeec--cccccCCceEEEecCCc
Confidence 89999999999995 5789999999998765431 11257888875 455555 44445566777765432
Q ss_pred EE-EEEeCCChHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHH
Q 015950 303 MV-KFVIPSPGLHLAINACAAAAVATLF-G-----VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375 (397)
Q Consensus 303 ~~-~~~l~l~G~~n~~N~laAia~a~~l-g-----i~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~ 375 (397)
.+ .+++|++|.||++|+++|++++..+ | ++++.|.++|++|+ +|||||++.. ++ .+|+| |||||+|+++
T Consensus 248 ~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~-~~-~viiD-~AhNp~s~~a 323 (428)
T 1jbw_A 248 RISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKISD-TP-LIVID-GAHNPDGING 323 (428)
T ss_dssp EEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEET-TT-TEEEE-CCCSHHHHHH
T ss_pred cccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEecC-CC-cEEEE-CCcCHHHHHH
Confidence 23 6889999999999999999999999 9 99999999999999 7999999975 44 57778 8999999999
Q ss_pred HHHHHhccCCCeEEEEEe
Q 015950 376 AIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 376 ~l~~l~~~~~~rv~~v~~ 393 (397)
+++++++..++|+++||.
T Consensus 324 ~l~~l~~~~~~~~i~V~g 341 (428)
T 1jbw_A 324 LITALKQLFSQPITVIAG 341 (428)
T ss_dssp HHHHHHHHCSSCCEEEEE
T ss_pred HHHHHHHhcCCCEEEEEe
Confidence 999999865467777764
No 11
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=9.1e-46 Score=377.73 Aligned_cols=268 Identities=20% Similarity=0.214 Sum_probs=215.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcCC--CCcCcc----------------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRV---------------- 172 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~g--~~n~~~---------------- 172 (397)
...+.+..++.++++|..+.++|+||||||||||++||+++|++.|++++ +++. ++|+++
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 44566677777888888889999999999999999999999999999984 2332 233332
Q ss_pred ---------------------chhhhhhcc----------cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhh
Q 015950 173 ---------------------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (397)
Q Consensus 173 ---------------------g~p~~l~~~----------~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dH 221 (397)
|.|++++++ +.++|++|||+|+++.. + .+++++|+++|||||+.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~--d-~tn~i~p~vaVITnI~~DH 201 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRW--D-ATNVINAPVAVITPISIDH 201 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT--S-TTCSSCCSEEEECCCCCCB
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcc--c-cccccCCCEEEECCcchhh
Confidence 334554443 68899999999976553 3 4578899999999999999
Q ss_pred hccCC-CHHHHHHHHHHhcccC---CCCcEEEEcCCCHhHHhhc----CCCCCcEEEEeccCCcceEEEeceEEecCCeE
Q 015950 222 LESLG-SLEDVARAKGEIFQES---KLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293 (397)
Q Consensus 222 ld~~g-s~e~~~~~K~~i~~~~---~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~ 293 (397)
+++|| |+|+|+++|++||+.+ ++++.+|+|.|||....+. ...+.++++||. |+.+.+ +.....+.
T Consensus 202 ld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~----d~~~~~--~~~~~~g~ 275 (487)
T 2vos_A 202 VDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS----EFAVLR--RQIAVGGQ 275 (487)
T ss_dssp CSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT----TBEEEE--EEEETTEE
T ss_pred hhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC----ceEEEe--eccccCCc
Confidence 99999 7999999999999765 6788999999999765543 111257788864 566666 55555677
Q ss_pred EEEEeecCeEE-EEEeCCChHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEec
Q 015950 294 QVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLF-------GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (397)
Q Consensus 294 ~~~~~~~~~~~-~~~l~l~G~~n~~N~laAia~a~~l-------gi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Ds 365 (397)
.|.+...+..+ .+.+|++|.||++|+++|++++..+ |++.+.|.++|++|+ .|||||++.. +..+|+|
T Consensus 276 ~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D- 351 (487)
T 2vos_A 276 VLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMRS--APTVFID- 351 (487)
T ss_dssp EEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEET--TTEEEEC-
T ss_pred eEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEcC--CCeEEEE-
Confidence 77776542222 6889999999999999999999998 899999999999999 5999999875 4689999
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCeEEEEEe
Q 015950 366 YNANPISTRAAIDLLKD-IACNVVQCKWR 393 (397)
Q Consensus 366 yahnp~s~~~~l~~l~~-~~~~rv~~v~~ 393 (397)
|||||+|++++++++++ ++.+|+++||.
T Consensus 352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G 380 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHEFDFRFLVGVLS 380 (487)
T ss_dssp CCCSHHHHHHHHHHHHHSCCCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999997 45678888875
No 12
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=4.7e-46 Score=375.89 Aligned_cols=262 Identities=20% Similarity=0.191 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcC--CCCcCcc---c------------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---G------------ 173 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~--g~~n~~~---g------------ 173 (397)
+++++|..|+.+ ..+.++|+||||||||||++||+++|++.|++|+ +|+ +++|+++ |
T Consensus 37 ~~~~~l~~lg~p----~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~ 112 (442)
T 1o5z_A 37 RISMLLSKLGNP----HLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIY 112 (442)
T ss_dssp HHHHHHHHTTCG----GGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCCc----hhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHH
Confidence 888888877654 4457899999999999999999999999999986 332 5666655 2
Q ss_pred ---------------hhhhhhcc----------cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-C
Q 015950 174 ---------------VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-S 227 (397)
Q Consensus 174 ---------------~p~~l~~~----------~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g-s 227 (397)
.|++++++ +.++|++|+|+|+++..+ .+++++|+++|||||+.||+|+|| |
T Consensus 113 ~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~P~vaViTnI~~DHld~~G~t 189 (442)
T 1o5z_A 113 ETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLD---ATNVVFPLCSTIVTVDRDHEKTLGYT 189 (442)
T ss_dssp HHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTC---GGGGCCCSCEEECCCCC-------CC
T ss_pred HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc---ccccCCCCEEEECCccHhhhhhhCcC
Confidence 23344333 678999999999865533 356789999999999999999999 8
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcC----CCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeE
Q 015950 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303 (397)
Q Consensus 228 ~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~ 303 (397)
+|+|+++|++||+ +++.+|+|.||+....+.. ..+.++++||. |+.+.. ......+..|.+...+..
T Consensus 190 ~e~ia~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~----d~~~~~--~~~~~~~~~~~~~~~~~~ 260 (442)
T 1o5z_A 190 IEQIAWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDK----DFSVKV--KSLKLHENRFDYCGENTF 260 (442)
T ss_dssp HHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TBEEEE--EECCTTCEEEEEESSSEE
T ss_pred HHHHHHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCc----ceeeec--cccccCCceEEEeccccc
Confidence 9999999999996 5788999999998765541 11257888875 455555 544445666776543222
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHH--HcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHh
Q 015950 304 VKFVIPSPGLHLAINACAAAAVAT--LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381 (397)
Q Consensus 304 ~~~~l~l~G~~n~~N~laAia~a~--~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~ 381 (397)
..+++|++|.||++|+++|++++. .+|++++.|.++|++|+ +|||||++.. ++..+|+| |||||+|+++++++++
T Consensus 261 ~~~~l~l~G~hn~~NalaAia~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~~-~~~~viiD-~AhNp~s~~~~l~~l~ 337 (442)
T 1o5z_A 261 EDLVLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK-NGKMYILD-GAHNPHGAESLVRSLK 337 (442)
T ss_dssp EEEEESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE-TTEEEEEC-CCCSHHHHHHHHHHHH
T ss_pred cccccCCCcHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEEc-CCCeEEEE-CCcCHHHHHHHHHHHH
Confidence 268899999999999999999999 99999999999999999 7999999986 44678899 9999999999999999
Q ss_pred cc-CCCeEEEEEe
Q 015950 382 DI-ACNVVQCKWR 393 (397)
Q Consensus 382 ~~-~~~rv~~v~~ 393 (397)
+. +++|+++||.
T Consensus 338 ~~~~~~~~i~V~g 350 (442)
T 1o5z_A 338 LYFNGEPLSLVIG 350 (442)
T ss_dssp HHCTTCCEEEEEC
T ss_pred HhCCCCCEEEEEe
Confidence 86 4467777774
No 13
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=8.1e-46 Score=375.27 Aligned_cols=241 Identities=30% Similarity=0.315 Sum_probs=194.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcc-cCCCcEEEEeecCCCcchHHhhccccCCc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMARPE 210 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~-~~~~~~~VlE~~~~~~~~~~~~~~~i~p~ 210 (397)
.++|+||||||||||++||+++|++.|.++ ...|| +|.|++.... ..+.+++|+|+|+.+ ++. .+.++|+
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~-~~~Gn----ig~~~~~~~~~~~~~d~~VlE~~s~~---l~~-~~~~~p~ 182 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRG-LLAGN----IGFPASEVVQAANDKDTLVMELSSFQ---LMG-VKEFRPH 182 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCE-EEEET----SSSCHHHHTTTCCTTCEEEEECCHHH---HTT-CSSCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCE-EEeee----cChhhhhhhhcCCCCCEEEEECCccc---ccc-ccccCCC
Confidence 489999999999999999999999999877 34565 6777665443 357899999998532 333 4568999
Q ss_pred EEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCCCCCcEEEEeccCCc-ceEEEeceEEec
Q 015950 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG 289 (397)
Q Consensus 211 iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~-d~~~~~~~i~~~ 289 (397)
++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|||....+......++++||.+... +++..+
T Consensus 183 iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 256 (451)
T 3lk7_A 183 IAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD------ 256 (451)
T ss_dssp EEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEET------
T ss_pred EEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEEC------
Confidence 9999999999999999999999999999999888999999999999888763334789999986532 233222
Q ss_pred CCeEEEEEeecCeEEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCC
Q 015950 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahn 369 (397)
. .+.+.+......++++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++++|+|+||||
T Consensus 257 -~--~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~g~~vi~D~~a~n 333 (451)
T 3lk7_A 257 -K--QLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN 333 (451)
T ss_dssp -T--EEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCCTTSSEEEEEETTEEEEECTTCCS
T ss_pred -C--EEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcEEEEeeeCCcEEEEeCCCCC
Confidence 1 2222211001134689999999999999999999999999999999999999999999998768899999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEe
Q 015950 370 PISTRAAIDLLKDIACNVVQCKWR 393 (397)
Q Consensus 370 p~s~~~~l~~l~~~~~~rv~~v~~ 393 (397)
|+|+.++|+.+. ++|+++++.
T Consensus 334 p~a~~~al~~~~---~~rii~I~g 354 (451)
T 3lk7_A 334 ILATQKALSGFD---NTKVILIAG 354 (451)
T ss_dssp HHHHHHHHHTSC---GGGEEEEEC
T ss_pred HHHHHHHHHhCC---CCCEEEEEC
Confidence 999999987653 445777664
No 14
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.8e-44 Score=364.51 Aligned_cols=256 Identities=22% Similarity=0.270 Sum_probs=205.4
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE-EcCCCCcCccc-hhhh
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF-QSYGNWNNRVG-VALS 177 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~-~t~g~~n~~~g-~p~~ 177 (397)
++|++... ++|.++...+ +.++|+||||||||||++||+++|++.|+++. .+.|+.++ ++ .+..
T Consensus 95 gi~v~~~~--------e~l~~~~~~~-----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~-~g~~~~~ 160 (469)
T 1j6u_A 95 RVPIENRL--------HYFRDTLKRE-----KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDS-LEHGNYE 160 (469)
T ss_dssp TCCEEEHH--------HHHHHHHHHH-----CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTT-STTSSEE
T ss_pred CCcEEEHH--------HHHHHHHhcc-----CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecc-cCccccc
Confidence 56777554 3444444321 36799999999999999999999999999873 45556544 45 3332
Q ss_pred hhcccCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCCC-HHHHHHHHHHhcccCCCCcEEEEcCCCHh
Q 015950 178 LIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVARAKGEIFQESKLGDVCVLNADDPL 256 (397)
Q Consensus 178 l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~gs-~e~~~~~K~~i~~~~~~~~~~vln~Dd~~ 256 (397)
+ .+.+ +|+|+|++.. ....++|+++|||||+.||+|+||+ +|+|+++|.++++.++ .+|+|.|||.
T Consensus 161 ---~-~~~~-~V~E~~~~~~-----~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---~~V~n~dd~~ 227 (469)
T 1j6u_A 161 ---K-GNGP-VVYELDESEE-----FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---LVVTFAEDEL 227 (469)
T ss_dssp ---C-CSSC-EEEEECTTSG-----GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---EEEEETTCTT
T ss_pred ---c-CCCC-EEEECCCccC-----ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---EEEEECCChh
Confidence 2 3467 9999986532 2335799999999999999999999 9999999999997653 8999999987
Q ss_pred HHhhcCCCCCcEEEEeccCCcceEEEeceEEecCCe-EEEEEeecCeE-EEEEeCCChHHHHHHHHHHHHHHHHcCCCHH
Q 015950 257 VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKEREM-VKFVIPSPGLHLAINACAAAAVATLFGVSLA 334 (397)
Q Consensus 257 ~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~~l~l~G~~n~~N~laAia~a~~lgi~~~ 334 (397)
...+ ++++||.+. +|+++ + +....++ ..|.+...+.. ..++++++|.||++|+++|++++..+|++++
T Consensus 228 ~~~~------~~~~~g~~~-~d~~~-~--~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~ 297 (469)
T 1j6u_A 228 TSHL------GDVTFGVKK-GTYTL-E--MRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLA 297 (469)
T ss_dssp TGGG------CSEEECSSS-SSEEE-E--EEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hccc------eEEEEECCC-ceEEE-E--EEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHcCCCHH
Confidence 5432 578999765 67877 6 7666556 67777544322 2688999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCeeeEE--eecCCeEEEEecCCCCHHHHHHHHHHHhc-cCCCeEEEEEe
Q 015950 335 QVGISLSNFSPVQMRSELL--VSRSGIKIVNDAYNANPISTRAAIDLLKD-IACNVVQCKWR 393 (397)
Q Consensus 335 ~i~~~L~~~~~~~GR~e~i--~~~~~~~vi~Dsyahnp~s~~~~l~~l~~-~~~~rv~~v~~ 393 (397)
.|.++|++|++++||||++ ...++++||+| |||||++++++++++++ ++++|++++|+
T Consensus 298 ~i~~~L~~f~g~~gR~e~v~~~~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g 358 (469)
T 1j6u_A 298 PVLEALEEFRGVHRRFSIAFHDPETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQ 358 (469)
T ss_dssp HHHHHHHHCCCCTTSSEEEEEETTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEEC
T ss_pred HHHHHHHhCCCCCCCcEEEcccccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999999999999999999 44478999999 99999999999999996 66688988884
No 15
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.4e-44 Score=364.69 Aligned_cols=265 Identities=18% Similarity=0.201 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcC--CCCcCcc------------------
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV------------------ 172 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~--g~~n~~~------------------ 172 (397)
++.+.++...+++|+.+.++|+||||||||||+.||+++|++.|++|+ +|+ .+||+++
T Consensus 35 L~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~ 114 (437)
T 3nrs_A 35 LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQ 114 (437)
T ss_dssp CHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHH
Confidence 456667777777889999999999999999999999999999999994 344 4778776
Q ss_pred ------chhhhhhcc----------cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHHHH
Q 015950 173 ------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAK 235 (397)
Q Consensus 173 ------g~p~~l~~~----------~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g-s~e~~~~~K 235 (397)
+.|++.+++ +.++|++|||+|+++. ++ .+++++|+++|||||+.||+|+|| |+|+|+++|
T Consensus 115 v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggr--ld-~tnii~p~vaVITnI~~DHld~lG~t~e~ia~~K 191 (437)
T 3nrs_A 115 IEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGR--LD-ATNIVDSDVAAITSIALDHTDWLGYDRESIGREK 191 (437)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSST--TS-GGGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCc--cc-cccccCCCEEEEcCccHHHHHHhCCcHHHHHHHH
Confidence 345555543 7899999999998654 33 367789999999999999999999 799999999
Q ss_pred HHhcccCCCCcEEEEcCCCHh--HHhhcCCCCCcEEEEeccCCcceEEEe---ceEEecCCeEEEEEeecCeEEEEEeCC
Q 015950 236 GEIFQESKLGDVCVLNADDPL--VANLTVPRGVRKVFFGWRRGCDVRLVA---AQVANGGLGVQVVLEKEREMVKFVIPS 310 (397)
Q Consensus 236 ~~i~~~~~~~~~~vln~Dd~~--~~~~~~~~~~~vi~~g~~~~~d~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~l~l 310 (397)
++||+ +++.+|+|.||+. ..+.+...++++++||.+ .++...+ ..+.....+..|.+...... .+.+++
T Consensus 192 a~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l 265 (437)
T 3nrs_A 192 AGVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVA--WKFSQQEPFDQQEPVDQQINGWHWQCGERQ-LTGLPV 265 (437)
T ss_dssp GGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT--EEEEC--------------CCEEEEETTEE-EEEECC
T ss_pred Hhhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEeccc--ceeeecccccccccccccCceEEEecCCcc-eeccCC
Confidence 99995 5789999988863 233331123688888854 2333220 00111122334555443211 355666
Q ss_pred C--hHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHh------c
Q 015950 311 P--GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK------D 382 (397)
Q Consensus 311 ~--G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~------~ 382 (397)
+ |.||+.|+++|+++ ..+|++.+.|.++|++|+ .|||||++.. +..+|+| |||||+|+++++++++ +
T Consensus 266 ~~~~~~Na~~Alaa~~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D-~AHNp~a~~all~~l~~~~~~~~ 340 (437)
T 3nrs_A 266 PNVPLANAATALAVLHY-SELPLSDEAIRQGLQAAS-LPGRFQVVSE--QPLLILD-VAHNPHAARYLVNRLAQVINPVN 340 (437)
T ss_dssp CSSCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHCC-CTTSSEEEET--TTEEEEC-CCCSHHHHHHHHHHHHHTC----
T ss_pred cchhHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhCC-CCCceEEEec--CCeEEEE-CCCCHHHHHHHHHHHHhhcchhh
Confidence 5 89999999999888 678999999999999999 6999999974 4579999 9999999999999999 7
Q ss_pred c-CCCeEEEEEe
Q 015950 383 I-ACNVVQCKWR 393 (397)
Q Consensus 383 ~-~~~rv~~v~~ 393 (397)
+ +++|+++||.
T Consensus 341 ~~~~~r~i~V~G 352 (437)
T 3nrs_A 341 ASKQGKVRAVVG 352 (437)
T ss_dssp ----CCEEEEEC
T ss_pred hcCCCCEEEEEe
Confidence 6 4677888875
No 16
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.5e-43 Score=355.82 Aligned_cols=254 Identities=19% Similarity=0.219 Sum_probs=195.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeE--EcC--CCCcCcc----------------
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---------------- 172 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~--~t~--g~~n~~~---------------- 172 (397)
++++.|..| ++|..+.++|+||||||||||++||+++|++.|++++ ++. +++|+++
T Consensus 34 r~~~~l~~l----g~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~ 109 (422)
T 1w78_A 34 RVSLVAARL----GVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASF 109 (422)
T ss_dssp HHHHHHHHH----TCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHc----CCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHH
Confidence 455555544 4577889999999999999999999999999999984 333 4566543
Q ss_pred --------chhhhhhcc----------cCCCcEEEEeecCCCcchHHhhccccCCcEEEEcCCChhhhccCC-CHHHHHH
Q 015950 173 --------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVAR 233 (397)
Q Consensus 173 --------g~p~~l~~~----------~~~~~~~VlE~~~~~~~~~~~~~~~i~p~iaViTNi~~dHld~~g-s~e~~~~ 233 (397)
+.|++++++ +.++|++|+|+|+++.++ .+++++|+++|||||+.||+|+|| |+|+|++
T Consensus 110 ~~v~~~~~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d---~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~ 186 (422)
T 1w78_A 110 AEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLD---ATNIVDADVAVVTSIALDHTDWLGPDRESIGR 186 (422)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTS---GGGGSCCSEEEECCCCSCCHHHHCSSHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccc---cccCCCCCEEEECCcChhhhhhhCCCHHHHHH
Confidence 344454443 678999999999876543 456789999999999999999999 7999999
Q ss_pred HHHHhcccCCCCcEEEEcCCCHhH--HhhcCCCCCcEEEEeccCCcceEEEeceEEecCCeEEEEEeecCeEEEEEeCCC
Q 015950 234 AKGEIFQESKLGDVCVLNADDPLV--ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (397)
Q Consensus 234 ~K~~i~~~~~~~~~~vln~Dd~~~--~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 311 (397)
+|++||+ +++.+|+|.||+.. .......+.++++||. ++.... .. ..|.+...+.. .+.++++
T Consensus 187 ~K~~i~~---~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~----~~~~~~-----~~--~~~~~~~~~~~-~~~l~l~ 251 (422)
T 1w78_A 187 EKAGIFR---SEKPAIVGEPEMPSTIADVAQEKGALLQRRGV----EWNYSV-----TD--HDWAFSDAHGT-LENLPLP 251 (422)
T ss_dssp HHGGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTT----TBEEEE-----CS--SCEEEEETTEE-EEEECCC
T ss_pred HHHhhcc---CCCcEEEcCccHHHHHHHHHHHcCCceEEeCc----ceeeec-----cC--ceEEEecCCcc-cccCCch
Confidence 9999995 47889999887642 1222111257888874 333221 11 22344333222 1678888
Q ss_pred hHHHHHHHHHHHHHHHHc--CCCHHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhccC-CCeE
Q 015950 312 GLHLAINACAAAAVATLF--GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA-CNVV 388 (397)
Q Consensus 312 G~~n~~N~laAia~a~~l--gi~~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~-~~rv 388 (397)
.||++|+++|++++..+ |++++.|.++|++|+ +|||||++.. + ..+|+| |||||+|++++++++++++ ++|+
T Consensus 252 -~hn~~Na~aAia~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~~-~-~~~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~ 326 (422)
T 1w78_A 252 -LVPQPNAATALAALRASGLEVSENAIRDGIASAI-LPGRFQIVSE-S-PRVIFD-VAHNPHAAEYLTGRMKALPKNGRV 326 (422)
T ss_dssp -SSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEET-T-TEEEEE-CCCSHHHHHHHHHHHHHSCSCSCE
T ss_pred -HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEeC-C-CeEEEE-CCCCHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999999986 899999999999999 5999999875 3 478889 9999999999999999876 5677
Q ss_pred EEEEe
Q 015950 389 QCKWR 393 (397)
Q Consensus 389 ~~v~~ 393 (397)
++||.
T Consensus 327 i~V~g 331 (422)
T 1w78_A 327 LAVIG 331 (422)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77775
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=1.6e-40 Score=322.88 Aligned_cols=208 Identities=19% Similarity=0.133 Sum_probs=171.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeEE----cCCCCcCc--cchhhhhhcccCCCcEEEEeecCCCcchHHhhcc
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ----SYGNWNNR--VGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~----t~g~~n~~--~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~ 205 (397)
.++||||||||||||++||+++|+..|.++.. +.||+++. ++.|.++ ..+.+.+++|+|+|+++.+.+.+...
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~~~p~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~ 186 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQ-DPNSQSPFFVIEADEYDTAFFDKRSK 186 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEECCCCCSS-CTTSCCCEEEEECCCSEEETTEEEEG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceecCCcccc-ccCCCCCEEEEEccccccchhhcccc
Confidence 67999999999999999999999999988642 33666654 5666665 56678999999999766544433322
Q ss_pred --ccCCcEEEEcCCChhhhccCCCHHHHHHHHHHhcccCCCCcEEEEcCCCHhHHhhcCC-CCCcEEEEeccCCcceEEE
Q 015950 206 --MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLV 282 (397)
Q Consensus 206 --~i~p~iaViTNi~~dHld~~gs~e~~~~~K~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~d~~~~ 282 (397)
.++|+++|||||++||||+|||+|+|+++|.+||+.+++++.+|+|.|||+...+..+ ...++++||. ++|+++.
T Consensus 187 ~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~--~~d~~~~ 264 (326)
T 3eag_A 187 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT--EHGWQAG 264 (326)
T ss_dssp GGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS--SSSEEEE
T ss_pred eeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC--CCcEEEE
Confidence 2599999999999999999999999999999999998889999999999999887622 2367899985 4688887
Q ss_pred eceEEecCCeEEEEEeecCe-EEEEEeCCChHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCC
Q 015950 283 AAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347 (397)
Q Consensus 283 ~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~G~~n~~N~laAia~a~~lgi~~~~i~~~L~~~~~~~ 347 (397)
+ +. .++. |.+...+. ...++++++|+||++|+++|++++..+|++++.|.++|++|++++
T Consensus 265 ~--~~--~~g~-f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 265 E--AN--ADGS-FDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp E--EC--TTSC-EEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred E--ec--CCcE-EEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 7 64 3455 77765433 237899999999999999999999999999999999999999865
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.24 E-value=6.5e-12 Score=109.17 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCCCCCCeeeEEeecCCeEEEEecCCCCHHHHHHHHHHHhc-cCCCeEEEEEe
Q 015950 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKD-IACNVVQCKWR 393 (397)
Q Consensus 333 ~~~i~~~L~~~~~~~GR~e~i~~~~~~~vi~Dsyahnp~s~~~~l~~l~~-~~~~rv~~v~~ 393 (397)
.++|+++|++|++++||||++...++++||+| |||||+||+++++++++ ++++|++++|+
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~ 71 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLE 71 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 46899999999999999999987689999999 99999999999999997 57789999985
No 19
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=91.18 E-value=0.28 Score=47.12 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=64.2
Q ss_pred CCCccHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC--CC
Q 015950 24 SPIWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NW 99 (397)
Q Consensus 24 ~~~~~l~~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~--~~ 99 (397)
.+.|+|+||++.+++++.++.+ |+++..= .+..+ ++|=|. +...|.+++.+ -.|.++|+.+... .+
T Consensus 5 ~~~~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~~~f~------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~ 74 (357)
T 4e79_A 5 VQQYRLDELAHLVKGELIGEGSLQFSNLASL-ENAEV--NHLTFV------NGEKHLDQAKV-SRAGAYIVTAALKEHLP 74 (357)
T ss_dssp CCCEEHHHHHHHTTCEEESCTTCEECEECCT-TTCCT--TEEEEC------CSGGGHHHHHT-CCCSEEEECHHHHHTCT
T ss_pred cCcccHHHHHHHhCCEEECCCCceEEeecCh-hcCCC--CcEEEe------CChhHHHHHhc-CCCEEEEEcHHHhhhcc
Confidence 3457999999999999877543 6777544 44567 888665 44578877777 7788888876421 12
Q ss_pred -CccEEEEcCCCCccHHHHHHHHHHHhh
Q 015950 100 -DKGFVQVEGNGNVNTLNSLVNMACYAR 126 (397)
Q Consensus 100 -~~~~i~v~~~~~~d~~~aL~~la~~~~ 126 (397)
..+++.++ |+..++.++..++.
T Consensus 75 ~~~~~i~~~-----~p~~~~~~~~~~~~ 97 (357)
T 4e79_A 75 EKDNFIIVD-----NPYLAFAILTHVFD 97 (357)
T ss_dssp TCCEEEECS-----CHHHHHHHHHTTSS
T ss_pred CCccEEEEC-----CHHHHHHHHHHHhc
Confidence 36789999 99999999888544
No 20
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=90.90 E-value=0.49 Score=45.08 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=60.0
Q ss_pred CccHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC-CCCcc
Q 015950 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKG 102 (397)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~-~~~~~ 102 (397)
.|+|+||++.+++++.++.+ ++++. .-++..+ ++|-|. +...|.+++.+ -.|.++++.+... ....+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~~~i~~~~-~~~~a~~--~~i~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~ 72 (341)
T 3eh0_A 3 SIRLADLAQQLDAELHGDGDIVITGVA-SMQSAQT--GHITFM------VNPKYREHLGL-CQASAVVMTQDDLPFAKSA 72 (341)
T ss_dssp CEEHHHHHHHTTCEEESCSCCEECEEC-CTTTCCT--TEEEEC------CCSSGGGGGGG-CCCSEEEECTTTGGGCCSC
T ss_pred cccHHHHHHHhCCEEeCCCCceEeeee-ccccCCC--CeEEEe------CCHHHHHHHhh-CCCCEEEECHHHhhhhccc
Confidence 37999999999999877544 66653 3355677 899765 33445655555 5677788776422 12345
Q ss_pred EEEEcCCCCccHHHHHHHHHHHhhc
Q 015950 103 FVQVEGNGNVNTLNSLVNMACYARN 127 (397)
Q Consensus 103 ~i~v~~~~~~d~~~aL~~la~~~~~ 127 (397)
.+.++ |+..++..+..++..
T Consensus 73 ~~~~~-----~p~~~~~~~~~~~~~ 92 (341)
T 3eh0_A 73 ALVVK-----NPYLTYARMAQILDT 92 (341)
T ss_dssp EEECS-----CHHHHHHHHHHHHCC
T ss_pred eEEeC-----CHHHHHHHHHHHhcc
Confidence 68899 999999999986543
No 21
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.24 E-value=0.54 Score=40.86 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhh-cCCCCCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACYAR-NSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~~~-~p~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.+..++.... .+..+..+|+|+|.+ ||||++.+|...|...+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 445666666332 223446799999965 899999999999977776653
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.19 E-value=0.27 Score=42.49 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=27.0
Q ss_pred CcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+ |-.||||++..|+..|...|++|.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl 34 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIA 34 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4688888 567899999999999999999984
No 23
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.02 E-value=0.65 Score=42.65 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACY--ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~--~~~p~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..|... +..+..+.++|.||++ .||||++.-|+..|...|.+|.
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVL 115 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTL 115 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 4555555542 2223456789999965 6999999999999988899985
No 24
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=89.64 E-value=1.2 Score=42.70 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeEE--cCCC---CcCccchhhhh--------------hcc-cCCCcE
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ--SYGN---WNNRVGVALSL--------------IGI-DRAVDI 187 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~~--t~g~---~n~~~g~p~~l--------------~~~-~~~~~~ 187 (397)
+.+.|.|||| .|||+|+..|.+.|++.|+++.. +..+ .+...|.|+.- ... .++.|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 4678999997 59999999999999999999742 2111 11223333211 112 478899
Q ss_pred EEEeecCCCc---ch---HHhhccccCCcEEEEcC-CChhhhccC------CCHHHHHHHHHH
Q 015950 188 AVLEMGMSGK---GE---ILELARMARPEIRVVLN-VGDSHLESL------GSLEDVARAKGE 237 (397)
Q Consensus 188 ~VlE~~~~~~---~~---~~~~~~~i~p~iaViTN-i~~dHld~~------gs~e~~~~~K~~ 237 (397)
.++|-. ++. .. -..+....+|+..|+.- -++.|++.+ +++++..+.-..
T Consensus 248 ivVEGq-Ggl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~ 309 (350)
T 2g0t_A 248 VFVEGQ-GALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIET 309 (350)
T ss_dssp EEEECC-SCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHH
T ss_pred EEEccC-eeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHH
Confidence 999965 322 10 11223356999999866 666666544 556665544333
No 25
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.56 E-value=0.38 Score=41.16 Aligned_cols=32 Identities=25% Similarity=0.063 Sum_probs=27.4
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++|+|+|.. ||||+...|...|+..|+++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 47899999974 999999999999988888874
No 26
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.51 E-value=0.31 Score=45.98 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.7
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.++|+|+| =.|||||+--|+..|.+.|++|.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 468999996 67899999999999999999984
No 27
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.83 E-value=0.78 Score=42.77 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHHHHH--hhcCCCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACY--ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~--~~~p~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..|... +..+..+.++|.||++ .||||++.-|+..|...|.+|.
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 137 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 137 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEE
Confidence 4555555441 2222455789999976 6999999999999988999985
No 28
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=88.70 E-value=0.41 Score=42.91 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++.|-|||| .|||+++..|.+.|++.|++|.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~ 37 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL 37 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 4788999998 6999999999999999999885
No 29
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=88.11 E-value=0.7 Score=44.62 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=59.9
Q ss_pred ccHHHHHHHhCCeecccCC--CceEEeeCCccccCCCCEEEEecCCcCCchhcHHHHHhcCCcEEEEecccCC-CCCccE
Q 015950 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGF 103 (397)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~--i~~i~~dSr~v~~~~g~lFval~G~~~dgh~~i~~A~~~~GA~~vv~~~~~~-~~~~~~ 103 (397)
|+|+||++.+++++.++.+ ++++..= ++..+ ++|-|. +...|.+++.+ -.|.++++.+... ....+.
T Consensus 26 ~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~l~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 95 (372)
T 3pmo_A 26 YTLGQLAAHVGAEVRGDADLPIQGLATL-QEAGP--AQLSFL------ANPQYRKYLPE-SRAGAVLLTAADADGFAGTA 95 (372)
T ss_dssp EEHHHHHHHHTCEEESCTTCEEEEEECG-GGCCT--TSEEEC------CCGGGGGGGGG-CCCSEEEECHHHHTTCSSCE
T ss_pred ccHHHHHHHhCCEEECCCCceEeeecCh-hhCCC--CeEEEE------CCHHHHHHHhc-CCCcEEEEcHHHHhhccccE
Confidence 7999999999999877544 6665433 46667 898665 33456665555 5677788776422 123468
Q ss_pred EEEcCCCCccHHHHHHHHHHHhhc
Q 015950 104 VQVEGNGNVNTLNSLVNMACYARN 127 (397)
Q Consensus 104 i~v~~~~~~d~~~aL~~la~~~~~ 127 (397)
+.++ |+..++..+.+++..
T Consensus 96 l~~~-----~p~~~~~~~~~~~~~ 114 (372)
T 3pmo_A 96 LVVA-----NPYLAYASLSHLFDR 114 (372)
T ss_dssp EECS-----CHHHHHHHHHGGGCC
T ss_pred EEEC-----CHHHHHHHHHHHhcc
Confidence 8899 999999888885543
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.04 E-value=0.37 Score=42.34 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.3
Q ss_pred cEEEEcCC---CChHHHHHHHHHHHHhCCCCeEE
Q 015950 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 133 ~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
++|.||++ .||||++.-|+..|.+.|++|..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 46777765 79999999999999999999853
No 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.83 E-value=0.93 Score=42.01 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~--~~~~p~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|...|.+|.
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 344444443 22222455789999875 5899999999999988899884
No 32
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.03 E-value=0.57 Score=41.61 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCcEEEEc---CCCChHHHHHHHHHHHHhC-CCCeE
Q 015950 131 SGVLVGVT---GSVGKSTTKSMIALALESL-GVNVF 162 (397)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~-g~~v~ 162 (397)
..++|+|+ |-.||||++..|+..|... |++|.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 38 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVL 38 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEE
Confidence 46788888 5678999999999999777 88884
No 33
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=84.38 E-value=0.8 Score=41.31 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++++|+|+++ .||||++..|+..|...|++|.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 39 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVL 39 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 4689999865 4799999999999988899985
No 34
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.21 E-value=1.5 Score=40.37 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEE---cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGV---TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~V---TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++..+..+-+..+. ..+..+|.. -|-.||||++..|+..|...|++|.
T Consensus 18 ~~~~~~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVl 69 (298)
T 2oze_A 18 EELKILEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVL 69 (298)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEE
Confidence 445555555443333 222333333 4678999999999999988999984
No 35
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.10 E-value=0.95 Score=39.95 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.7
Q ss_pred cEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|++ -.||||++..|+..|.+.|++|.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL 35 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5788875 46899999999999988899985
No 36
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=83.85 E-value=0.96 Score=41.15 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCCcEEEEcCCC---ChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGTn---GKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++.|-||||. |||+++..|.+.|++.|++|.
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~ 59 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 457889999986 999999999999999999984
No 37
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=83.27 E-value=2 Score=42.62 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHH-HHHHHHHHHh
Q 015950 134 LVGVTGSVGKSTT-KSMIALALES 156 (397)
Q Consensus 134 vI~VTGTnGKTTT-~~~l~~iL~~ 156 (397)
+|+|| |||||++ +.+|.+-|++
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLES 145 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHH
Confidence 89999 9999998 8888888853
No 38
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=82.90 E-value=2.5 Score=36.62 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEcCCC--ChHHHHHHHHHHHHhCC
Q 015950 116 NSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLG 158 (397)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g 158 (397)
+.+..|+.....-..+..+|+|.|-| ||||+..+|..++...|
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45666766433212456799999965 89999999999997544
No 39
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=82.87 E-value=1 Score=41.40 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=26.4
Q ss_pred cEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|+ |-.||||++..|+..|...|++|.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 37 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVA 37 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 588998 567899999999999998999985
No 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=82.03 E-value=1.3 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.0
Q ss_pred CcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.|-|||| .|||+++..|.+.|++.|++|.
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~ 54 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceE
Confidence 578999998 6999999999999999999884
No 41
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.60 E-value=0.96 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=24.8
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHh-CCCCeE
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALES-LGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~-~g~~v~ 162 (397)
+..+|+++|. .|||||...|+..+.. .|.+|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 3457777664 3899999999999974 788874
No 42
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.35 E-value=1.3 Score=41.77 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=26.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|+|.+ |||||+..|+..|...|.+|.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5689999865 899999999999988888874
No 43
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.21 E-value=1.6 Score=37.10 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=25.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeEEc
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
+|+++| -.||||.+.+|++.|...|+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 688999 5789999999999998889887644
No 44
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.00 E-value=1.5 Score=40.66 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=27.5
Q ss_pred CCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|+|+| -.||||++.-|+..|.+.|++|.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vl 73 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 73 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4577888874 57899999999999999999984
No 45
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=79.99 E-value=1.4 Score=39.89 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.++|+|++. .||||++..|+..|. .|++|.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVL 59 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 345789999765 579999999999996 898884
No 46
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.96 E-value=1.7 Score=40.63 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|+|-+ |||||+..|+..|...|.+|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 4689999965 799999999999988888874
No 47
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=79.75 E-value=1.8 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.8
Q ss_pred CcEEEEcCC---CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.++|+|+++ .||||++..|+..|...|++|.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vl 51 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVG 51 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 578888865 5799999999999988899985
No 48
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=79.63 E-value=1.4 Score=39.51 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.0
Q ss_pred cEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|++ -.||||++..|+..|...|++|.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVT 35 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 4677754 56899999999999988899984
No 49
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=79.57 E-value=1.8 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=29.4
Q ss_pred hcCCCCCcEEEEc---CCCChHHHHHHHHHHHHh------CCCCeE
Q 015950 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALES------LGVNVF 162 (397)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~~------~g~~v~ 162 (397)
+.+....++|+|+ |-.||||++..|+..|.. .|++|.
T Consensus 102 ~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVl 147 (398)
T 3ez2_A 102 RDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRIL 147 (398)
T ss_dssp GGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEE
T ss_pred CcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 4445568899998 557899999999999963 588874
No 50
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=79.52 E-value=1.7 Score=38.74 Aligned_cols=30 Identities=33% Similarity=0.446 Sum_probs=25.6
Q ss_pred cEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|++ -.||||++..|+..|...|++|.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 5777764 56899999999999998999985
No 51
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=79.26 E-value=1.7 Score=37.90 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=37.7
Q ss_pred EEEEc---CCCChHHHHHHHHHHHHhCCCCeEEc----CCCCcCccc---hh-----h-hhhcccCCCcEEEEeecCC
Q 015950 134 LVGVT---GSVGKSTTKSMIALALESLGVNVFQS----YGNWNNRVG---VA-----L-SLIGIDRAVDIAVLEMGMS 195 (397)
Q Consensus 134 vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~~t----~g~~n~~~g---~p-----~-~l~~~~~~~~~~VlE~~~~ 195 (397)
+|+|+ |-.||||++..|+..|...| +|..- .++.....+ .| . .+..+....|++|+.++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 56665 67799999999999998888 88421 111100000 01 0 1223456788999998744
No 52
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=78.64 E-value=2 Score=40.29 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++|.|+ |-.||||++.-++..|.+.|++|.
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVL 46 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTL 46 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEE
Confidence 34666666 778899999999999999999984
No 53
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=78.10 E-value=1.1 Score=43.52 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=23.6
Q ss_pred hcCCCCCcEEEEc---CCCChHHHHHHHHHHHH------hCCCCeE
Q 015950 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALE------SLGVNVF 162 (397)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~~l~~iL~------~~g~~v~ 162 (397)
+.+....++|+|+ |-.|||||+..|+..|. ..|++|.
T Consensus 105 r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVl 150 (403)
T 3ez9_A 105 RDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRIL 150 (403)
T ss_dssp HHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEE
T ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 3335568899999 67799999999999996 3688874
No 54
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.11 E-value=2.8 Score=35.35 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.5
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCeEEc
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
+|+++|. .||||.+.+|+.-|...|+.+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5888884 699999999999997778877543
No 55
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=76.85 E-value=2.4 Score=40.29 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCCCcEEEEc---CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++++|.|+ |-.||||++.-++..|...|++|.
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVL 58 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVV 58 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 3456777777 677899999999999999999984
No 56
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=76.80 E-value=1.4 Score=40.91 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCC
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGV 159 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~ 159 (397)
+..+|+|||. .||||++.+|++.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~ 34 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGV 34 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3568999995 5999999999999864444
No 57
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=76.69 E-value=3.6 Score=38.05 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhC
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESL 157 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~ 157 (397)
..+..+|+|+|. .||||++.+|...|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 345678999994 79999999999999653
No 58
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.22 E-value=3 Score=35.47 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=26.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++++|+|. .||||+...|...|...|+++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 689999997 5899999999888877888874
No 59
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.65 E-value=2.5 Score=36.35 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=26.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|+| -.||||.+.+|+.-|...++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 46899999 48999999999999977787764
No 60
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.43 E-value=4.7 Score=39.75 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=26.3
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|.++|. .|||||+.-|+..|...|++|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 568888885 4799999999999988899884
No 61
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=73.63 E-value=2.3 Score=36.05 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+|.+ ||||+..+|..+++..|++++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 4689999975 799999999999988777763
No 62
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.22 E-value=2.4 Score=37.87 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+|||+|-| ||||+..+|+.+|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999965 8999999999988
No 63
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.99 E-value=3.1 Score=35.69 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..+|+|+|. .||||.+.+|+.-|...++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3568999994 7999999999999977777763
No 64
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.75 E-value=2.1 Score=36.99 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.3
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+|+|+|-| ||||+..+|..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999965 69999999999983
No 65
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.31 E-value=4.1 Score=34.13 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=25.8
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++||. .||||+..+|+..|...|+++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 568999996 5899999999999977776654
No 66
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.29 E-value=3.4 Score=40.66 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|.++|-+ |||||+..|+..|...|++|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5689998854 699999999999999999884
No 67
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.22 E-value=4 Score=34.45 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+..+|.++|- .||||....|+..|...|+++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34568999995 7899999999999987777763
No 68
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.80 E-value=3.6 Score=34.54 Aligned_cols=30 Identities=37% Similarity=0.364 Sum_probs=24.3
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 56788884 7999999999999976676653
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.60 E-value=2.2 Score=38.27 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
|..+.|+..... +..++.+|+|||. .||||++.+|+..|
T Consensus 6 ~~~~~~~~~~~~---~~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 6 DSEQTLQNHQQP---NGGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred chHHHHHHhhhc---cCCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 566666666552 1334568999995 69999999999877
No 70
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=71.27 E-value=2 Score=41.09 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.1
Q ss_pred CcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|++ -.||||++.-|+..|...|++|.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVL 34 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVL 34 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 46777775 46899999999999988999985
No 71
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=70.89 E-value=5.5 Score=37.47 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=27.5
Q ss_pred HHHHHHHH-HhhcC-CCCCcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 116 NSLVNMAC-YARNS-RFSGVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 116 ~aL~~la~-~~~~p-~~~~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
++|..+.. +...+ .....+|||+|. .||||++.+|..+|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444444 44442 233458999995 579999999999994
No 72
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=70.71 E-value=3.5 Score=39.50 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCCcEEEEcC---CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG---TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.++|+|++ -.||||++.-|+..|...|++|.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 3578999986 45899999999999988899985
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.83 E-value=4.3 Score=37.78 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++.|-| |||||...|+.+++..+.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4588888866 899999999999987777764
No 74
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=69.38 E-value=2.3 Score=36.55 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=20.6
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+|+|||. .||||++.+|+. + |+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i 29 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVL 29 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEE
Confidence 57999996 589999999988 6 55554
No 75
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=67.38 E-value=5.6 Score=34.89 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=27.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEc
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
..+|.+.| -.||||.+..|.+-|...|+++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 46888999 4689999999999998889888644
No 76
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=67.13 E-value=4.8 Score=38.34 Aligned_cols=172 Identities=23% Similarity=0.199 Sum_probs=92.1
Q ss_pred ccCCCCEEEEe--cCCcC--CchhcHHHHHhcCCcEEEEecccC-CC---------CCccEEEEcCCCCccHHHHHHHHH
Q 015950 57 APNKNQWFFAI--TGQHF--DAHEFISPELYGKGCVGVIGNQVC-NN---------WDKGFVQVEGNGNVNTLNSLVNMA 122 (397)
Q Consensus 57 ~~~~g~lFval--~G~~~--dgh~~i~~A~~~~GA~~vv~~~~~-~~---------~~~~~i~v~~~~~~d~~~aL~~la 122 (397)
.| +.+.+.. .|... +-...+.+|++ +|...|=.-+.. .. .+..++-|. .+...| ..+
T Consensus 73 ~~--d~lvig~a~~gG~l~~~~~~~i~~Al~-~G~~Vvsglh~~l~~~pel~~~A~~g~~i~dvr-----~pp~~l-~~~ 143 (349)
T 2obn_A 73 KP--QVLVIGIAPKGGGIPDDYWIELKTALQ-AGMSLVNGLHTPLANIPDLNALLQPGQLIWDVR-----KEPANL-DVA 143 (349)
T ss_dssp CC--SEEEECCCCCCC-SCGGGHHHHHHHHH-TTCEEEECSSSCCTTCHHHHHHCCTTCCEEETT-----CCCSSC-CCC
T ss_pred CC--CEEEEEecCCCCCCCHHHHHHHHHHHH-cCCcEEeCccchhhCCHHHHHHHHcCCEEEEec-----cCcccc-ccc
Confidence 46 7777765 24433 44577888999 998765443211 10 133333222 111111 011
Q ss_pred HHhhcCCCCCcEEEEcCC---CChHHHHHHHHHHHHhCCCCeEE--cCCC--CcCccchhhh-------------h-hcc
Q 015950 123 CYARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ--SYGN--WNNRVGVALS-------------L-IGI 181 (397)
Q Consensus 123 ~~~~~p~~~~~vI~VTGT---nGKTTT~~~l~~iL~~~g~~v~~--t~g~--~n~~~g~p~~-------------l-~~~ 181 (397)
.-..+ ..+.+.|.|||| .|||+|+..|.+.|++.|+++.. |..+ .-...|.|.. + ...
T Consensus 144 ~g~~~-~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~ 222 (349)
T 2obn_A 144 SGAAR-TLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRY 222 (349)
T ss_dssp CSGGG-GCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHH
T ss_pred cccee-eecceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHh
Confidence 00001 124678999997 59999999999999999999743 1111 0011223321 1 123
Q ss_pred cCCCcEEEEeecCC--Ccc--hHHhhccccCCc-EEEEcCCChhhhccC-----CCHHHHHHHHHHh
Q 015950 182 DRAVDIAVLEMGMS--GKG--EILELARMARPE-IRVVLNVGDSHLESL-----GSLEDVARAKGEI 238 (397)
Q Consensus 182 ~~~~~~~VlE~~~~--~~~--~~~~~~~~i~p~-iaViTNi~~dHld~~-----gs~e~~~~~K~~i 238 (397)
.++.|+.++|=.-+ ++. ....+....+|+ +.+....++-|++.| +++++....-..+
T Consensus 223 ~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 223 GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 56889999995311 111 112333445878 677777777777444 3556555554444
No 77
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=66.80 E-value=5.8 Score=37.40 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=26.6
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..+|++.|-| |||||...|+.+++..+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 45688888855 799999999999998888874
No 78
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=66.79 E-value=3.5 Score=38.33 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
.+..+|||+|.| ||||+..+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446799999965 69999999999994
No 79
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.52 E-value=3.6 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+|+++|-| ||||+..+|..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999976 7999999999886
No 80
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=66.49 E-value=6 Score=34.18 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=25.5
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCCeEEcC
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVNVFQSY 165 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~ 165 (397)
|.+-| -.||||-+.+|++-|++.|+++..+.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 55555 47999999999999999999986553
No 81
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.15 E-value=4.4 Score=34.88 Aligned_cols=26 Identities=38% Similarity=0.354 Sum_probs=21.1
Q ss_pred EEEEcCCC--ChHHHHHHHHHHHHhCCC
Q 015950 134 LVGVTGSV--GKSTTKSMIALALESLGV 159 (397)
Q Consensus 134 vI~VTGTn--GKTTT~~~l~~iL~~~g~ 159 (397)
+++|+|-| ||||+..+|+..++..|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi 30 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCE
Confidence 57777766 599999999999986663
No 82
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=65.08 E-value=4.2 Score=36.50 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=24.3
Q ss_pred cEEEE--cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~V--TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+| -|-.||||++..|+..|...|++|.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 34444 4568999999999999988899984
No 83
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.88 E-value=12 Score=35.26 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.++|+|+|. .||||+..-|...|...|.++.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 445678999994 6899999999988877888863
No 84
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=64.73 E-value=4.5 Score=34.51 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
++|+|||. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999996 69999999999988
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.64 E-value=6 Score=37.82 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|++.|-| |||||...|+.+++..+.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 4588888866 899999999999987777764
No 86
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=64.56 E-value=6.5 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=27.7
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCC-eEEc
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVN-VFQS 164 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~-v~~t 164 (397)
..+..+|.+.|- .||||.+..|.+.|...|++ +..+
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 344568888884 58999999999999999988 4433
No 87
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.28 E-value=4.5 Score=34.89 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=23.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|||- .||||++.+|+..| |+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g~~vi 41 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---GAHVV 41 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCEEE
Confidence 468999994 79999999999876 56554
No 88
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.74 E-value=4 Score=35.03 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=20.4
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+|++||. .||||+..+|+. | |+.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l---g~~~i 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L---GVPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T---TCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C---CCccc
Confidence 47999996 589999999987 3 66553
No 89
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.71 E-value=3.9 Score=34.71 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=22.6
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+..+|+|||. .||||++.+|+.. |+.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 445678999995 6999999998874 66554
No 90
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.06 E-value=5.2 Score=32.83 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.4
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+++|.|+|. .||||++.+|+..|
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999995 68999999999888
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=62.66 E-value=5.5 Score=33.82 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEcCCCC--hHHHHHHHHHHH
Q 015950 134 LVGVTGSVG--KSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGTnG--KTTT~~~l~~iL 154 (397)
.++++|-|| |||+..+|..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 589999876 999999999999
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=62.61 E-value=5.4 Score=37.28 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 130 FSGVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
.+..+|||.|.| ||||+..+|..+|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 446799999965 899999999999954
No 93
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=62.54 E-value=5.1 Score=36.51 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.4
Q ss_pred CcEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|+|+ |-.||||++.-|+..|...|++|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4555554 568999999999999988899984
No 94
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.36 E-value=5.4 Score=32.91 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.+|+|||. .||||++.+|+.-| |+++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 4778999995 78999999999988 45553
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=62.06 E-value=7 Score=39.11 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|.|-| ||||+...|+.+++..+.++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 4588888876 799999999999987777774
No 96
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=61.87 E-value=6.2 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+|+|+|-+ ||||+..+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999965 6999999999988
No 97
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=61.57 E-value=8.2 Score=34.69 Aligned_cols=31 Identities=35% Similarity=0.414 Sum_probs=25.7
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++|.++| -.||||.+..|+..|...|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 56788888 56999999999999977888764
No 98
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=60.73 E-value=7.7 Score=35.83 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=26.3
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|+|- .||||++..|+..+...|.++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468888884 5899999999999988888874
No 99
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=60.58 E-value=7.9 Score=33.05 Aligned_cols=30 Identities=33% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCC
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~ 160 (397)
+..+|+|+|- .||||+..+|+..|...|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 4678999996 68999999999999755544
No 100
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.06 E-value=4.4 Score=35.56 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.2
Q ss_pred CcEEEEcCCC--ChHHHHHHHH-HHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIA-LAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~-~iL 154 (397)
..+|+++|-| ||||+..+|. .++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999987 7999999999 877
No 101
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=59.99 E-value=24 Score=34.42 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=25.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|+| -.||||++.-|+..|...|++|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34777777 46899999999999988888874
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=59.83 E-value=9.4 Score=35.47 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..+|+|.|-| ||||+...|+.+++..+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35688888855 799999999999987777764
No 103
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=58.92 E-value=9.7 Score=33.38 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=25.9
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCC-CeEEc
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGV-NVFQS 164 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~-~v~~t 164 (397)
..+|.+.|. .||||.+..|.+.|+..|+ .+..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 357777774 4799999999999999888 55433
No 104
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=58.31 E-value=8.1 Score=31.95 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 129 RFSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+..+|+++|- .||||+..+|+..+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 344678999995 68999999999887
No 105
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=58.28 E-value=4.4 Score=34.30 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.5
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
++++|+|-| ||||+..+|..++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468899966 69999999999884
No 106
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=58.01 E-value=7 Score=36.65 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-.||||++..++..|.+.|++|.
T Consensus 27 kGGvGKTTva~~LA~~lA~~G~rVl 51 (329)
T 2woo_A 27 KGGVGKTTTSCSLAIQMSKVRSSVL 51 (329)
T ss_dssp SSSSSHHHHHHHHHHHHHTSSSCEE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 3678999999999999988999985
No 107
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.46 E-value=11 Score=37.07 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.8
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhC-CCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESL-GVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~-g~~v~ 162 (397)
.++|.|+| -.|||||+.-|+..|... |++|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 45777776 468999999999999888 99884
No 108
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=57.45 E-value=6.3 Score=32.43 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.2
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
++|.|+|. .||||.+.+|+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 56888885 79999999999988
No 109
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=57.23 E-value=14 Score=32.69 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+.+++..+..+..+..+|.|+|- .||||.+.+|++-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35556677644332445668999995 68999999998877
No 110
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=56.84 E-value=3.5 Score=36.29 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-.||||++.-|+..|...|++|.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vl 32 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIY 32 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4567899999999999988898884
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.79 E-value=5.4 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+|+|+|-+ ||||+..+|...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999965 8999999998877
No 112
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=56.41 E-value=9.8 Score=34.81 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCCcEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++.|-||| +-||.-|++-|..+|++.|++|.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt 57 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcce
Confidence 3578999999 78999999999999999999983
No 113
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.96 E-value=17 Score=33.59 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=26.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+++|- .||||++..|+..+...|.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 458888884 5799999999999988888874
No 114
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=55.43 E-value=8.1 Score=34.25 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHHh-CCCCeEE
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALES-LGVNVFQ 163 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~~-~g~~v~~ 163 (397)
+..+|.+.| -.||||.+..|++.|.. .|+++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 467899999 46799999999999988 8888765
No 115
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=54.65 E-value=8.7 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.+|+|||. .||||++.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999996 56999999999887
No 116
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=54.55 E-value=11 Score=32.73 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.1
Q ss_pred cEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEcC
Q 015950 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVFQSY 165 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~ 165 (397)
+.|.+-| -.||||.+.+|++-| ..|+++..+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEee
Confidence 3566666 479999999999999 5688886553
No 117
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=54.10 E-value=11 Score=31.88 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=23.5
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|.|+| -.||||.+..|+.-|...| .+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 35789999 5899999999999995444 443
No 118
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=53.99 E-value=9.2 Score=36.32 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=24.7
Q ss_pred CcEEEE--cCCCChHHHHHHHHHHHH--hCCCCeE
Q 015950 132 GVLVGV--TGSVGKSTTKSMIALALE--SLGVNVF 162 (397)
Q Consensus 132 ~~vI~V--TGTnGKTTT~~~l~~iL~--~~g~~v~ 162 (397)
.+++.+ .|-.||||++..++..|. ..|.+|.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vl 52 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFL 52 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 345444 467899999999999997 7899984
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=53.82 E-value=13 Score=33.88 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhCCC
Q 015950 134 LVGVTGSVGKSTTKSMIALALESLGV 159 (397)
Q Consensus 134 vI~VTGTnGKTTT~~~l~~iL~~~g~ 159 (397)
+.|=+|| |||+++..+++.+...+.
T Consensus 72 l~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 72 FTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 3444444 999999999999966554
No 120
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=53.43 E-value=22 Score=33.37 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCCCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
..+..+|+++|.+ ||||+...|...+...+.++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4457899999975 79999999999998777775
No 121
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.36 E-value=8.4 Score=32.77 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.3
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.++.+|+|+|. .||||.+.+|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999994 68999999988765
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=52.09 E-value=14 Score=30.67 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCC
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLG 158 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g 158 (397)
.+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 57889884 799999999999996555
No 123
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=51.96 E-value=11 Score=33.30 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhC----CCCeEEc
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESL----GVNVFQS 164 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~----g~~v~~t 164 (397)
+..+|.+.|- .||||.+..|++-|... |+++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 4578999995 57999999999999877 8887544
No 124
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=51.89 E-value=9.3 Score=36.04 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 138 TGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 138 TGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|-.||||++.-++..|...|++|.
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vl 48 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVL 48 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEE
Confidence 4788999999999999988888884
No 125
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=51.39 E-value=7.4 Score=36.48 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCcEEEE----cCCCChHHHHHHHHHHHHhCC
Q 015950 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLG 158 (397)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~~l~~iL~~~g 158 (397)
+.+.|||.| .|-.|||-++..|+..|+..+
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 456789998 899999999999999996443
No 126
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.37 E-value=11 Score=30.90 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEEcCC--CChHHHHHHHHHHH
Q 015950 134 LVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.|+|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5888885 79999999999988
No 127
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.87 E-value=8 Score=31.83 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.2
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.+|+|+|. .||||+..+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 57999996 58999999999988
No 128
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.43 E-value=5.4 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=19.7
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHH
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
...+|+|+| -.||||.+.+|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999 568999999988766
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.11 E-value=9 Score=31.97 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.1
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
++|.|+| -.||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999 489999999999988
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=49.90 E-value=16 Score=34.42 Aligned_cols=32 Identities=38% Similarity=0.446 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCC--hHHHHHHHHHHHHhCCCCe
Q 015950 130 FSGVLVGVTGSVG--KSTTKSMIALALESLGVNV 161 (397)
Q Consensus 130 ~~~~vI~VTGTnG--KTTT~~~l~~iL~~~g~~v 161 (397)
.+..+++|+|.+| |||+..+|..++...+.++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 4567999999875 9999999999997766665
No 131
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=49.71 E-value=11 Score=31.60 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.++|.++| -.||||.+.+|+.-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888 468999999999887
No 132
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.55 E-value=9.4 Score=32.91 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.3
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+|+|+|-+ ||||+..+|...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999976 6999999998877
No 133
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=49.03 E-value=13 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.0
Q ss_pred CCCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
....+|+|+|.+ ||||+..+|+..|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999964 8999999999877
No 134
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=48.57 E-value=16 Score=33.29 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCcEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+++.|-||| +-||.-|++-|..+|++.|++|.
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 478999998 56999999999999999999983
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.57 E-value=12 Score=31.08 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.9
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+++|+++|. .||||.+.+|++-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999995 69999999999877
No 136
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=48.20 E-value=17 Score=36.22 Aligned_cols=34 Identities=38% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCCcEEEEcCC------CChHHHHHHHHHHHHhCCCCeE
Q 015950 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+.++|.||.+ -|||||+.=|+..|...|.+|.
T Consensus 54 ~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVL 93 (557)
T 3pzx_A 54 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVM 93 (557)
T ss_dssp SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEE
Confidence 456789999987 5799999999999999999985
No 137
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=48.12 E-value=13 Score=31.30 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.1
Q ss_pred EEEEcCC--CChHHHHHHHHHHH
Q 015950 134 LVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+|+|+|. .||||.+.+|++-|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 5788884 68999999999988
No 138
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.54 E-value=8.9 Score=33.25 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.1
Q ss_pred EEEcCCCChHHHHHHHHHHH
Q 015950 135 VGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL 154 (397)
+|..|| ||||.+..|+.-|
T Consensus 11 ~G~~Gs-GKsT~~~~La~~l 29 (222)
T 1zak_A 11 SGAPAS-GKGTQCELIKTKY 29 (222)
T ss_dssp EESTTS-SHHHHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHHHh
Confidence 344444 9999999999988
No 139
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=47.40 E-value=20 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=22.2
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+.+++.+||. .||||...-+..=+...|++|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 44679999999 5666555444444446788874
No 140
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.37 E-value=14 Score=30.90 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=19.8
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+.+.|++||. .||||++.+|+..|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999996 57999999998873
No 141
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.36 E-value=15 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHHH-hCCCCe
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALALE-SLGVNV 161 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL~-~~g~~v 161 (397)
...+|.|+| -.||||.+.+|+..|. ..|+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 356899999 4789999999999996 566554
No 142
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=47.21 E-value=17 Score=31.97 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.6
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEEc
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~t 164 (397)
...+|.|.|- .||||.+.+|+..|.. |+.+..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4568899995 6799999999999966 7777544
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.15 E-value=11 Score=32.23 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+++|.|-| ||||+..+|..++
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46799999976 8999999999998
No 144
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=47.09 E-value=17 Score=36.33 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=25.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.++|+|+|. .|||||+.-|+..|...|.++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 558888884 6899999999999988888873
No 145
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=46.91 E-value=16 Score=35.74 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.5
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+++|- .||||++..|+..|...|.+|.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 457777774 5899999999999988888874
No 146
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.90 E-value=21 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCC
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGV 159 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~ 159 (397)
+=++|+..+..+...+. ..+.|+| -.||||+...+...|...+.
T Consensus 29 ~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 45667776666544312 1455555 34999999888877777776
No 147
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=46.87 E-value=16 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.7
Q ss_pred EcCCCChHHHHHHHHHHHH--hCCCCeE
Q 015950 137 VTGSVGKSTTKSMIALALE--SLGVNVF 162 (397)
Q Consensus 137 VTGTnGKTTT~~~l~~iL~--~~g~~v~ 162 (397)
=-|-.||||++.-|+..|. ..|++|.
T Consensus 25 gKGGvGKTTvaanLA~~lA~~~~G~rVL 52 (354)
T 2woj_A 25 GKGGVGKTTSSCSIAIQMALSQPNKQFL 52 (354)
T ss_dssp ESTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 3478999999999999998 7899985
No 148
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=46.74 E-value=12 Score=34.12 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+.+|+|||. .||||++.+|+. + |+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-l---g~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-L---GAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-H---TCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 568999995 699999999984 3 66554
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=46.57 E-value=14 Score=31.42 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=20.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+++|+|+|- .||||.+..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999995 57999999999888
No 150
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=45.93 E-value=16 Score=31.00 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=19.7
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+++|.++|- .||||++..|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567888885 48999999999988
No 151
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=45.76 E-value=42 Score=31.52 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
...+|+|+|.+ ||||+...|...+...+.++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 37899999975 79999999998887776665
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.63 E-value=9.2 Score=31.72 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.2
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
++.+|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999995 78999999998876
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=45.42 E-value=15 Score=33.25 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=22.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhC
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~ 157 (397)
..+++|+|-| ||||+..+|..++...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 5689999965 8999999999998643
No 154
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=45.27 E-value=14 Score=32.37 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+--||+||. .||||++.+++. + |+.++
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vi 37 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLV 37 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 34678999994 789999998876 3 77764
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.98 E-value=15 Score=30.58 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=19.2
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+|+++|. .||||.+..|+.-|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899995 68999999998877
No 156
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.75 E-value=6 Score=33.91 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=21.8
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+|+|.| -.||||.+..|...|...|+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 455666 36999999999999976666553
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=44.51 E-value=13 Score=31.11 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.7
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.++|+|+|. .||||.+.+|+.-|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899984 68999999999988
No 158
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=44.37 E-value=11 Score=31.79 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=22.6
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+++|- .||||.+.+|+.-| .|+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~ 34 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIK 34 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceE
Confidence 468999994 79999999999877 345553
No 159
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=44.36 E-value=13 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=18.5
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
++++|.|-| ||||+..+|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467888865 8999999999987
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=44.31 E-value=22 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+++|+|-| ||||+...+...+...+.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5689999975 699999999876655566663
No 161
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.23 E-value=20 Score=30.38 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.1
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+|.|+|. .||||.+.+|+.-|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999995 68999999999988
No 162
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=42.30 E-value=16 Score=31.41 Aligned_cols=27 Identities=44% Similarity=0.624 Sum_probs=21.0
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..+|+|||. .||||.+.+|+. | |+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l---g~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L---GINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 358999995 599999999987 3 66544
No 163
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=41.96 E-value=15 Score=32.88 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.1
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+||+|| -.||||++.++..-+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 579999999887653
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=41.85 E-value=17 Score=30.42 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.0
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..++|+|+|-+ ||||+..+|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999965 7999999998876
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=41.13 E-value=21 Score=28.83 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred cEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++|+|+|. .||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47888884 5899999988 45577654
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=41.05 E-value=31 Score=27.94 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCCCeE
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v~ 162 (397)
....+++.|.+ ||||+..++...+...|.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~ 68 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAA 68 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 45689999964 899999999999976665554
No 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=40.54 E-value=62 Score=27.02 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCC--CCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACYARNSRF--SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~--~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++..+..+...... ..+.+.++|. .|||+.+..++..+...+.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3455555444443111 1257888886 5899999999998876676653
No 168
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=40.33 E-value=17 Score=30.04 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=18.6
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46888884 68999999999888
No 169
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=40.26 E-value=14 Score=34.43 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEcC--CCChHHHHHHHHHHHHhCCCCeEEcC
Q 015950 114 TLNSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQSY 165 (397)
Q Consensus 114 ~~~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~~t~ 165 (397)
.+..|..|-..... .....+|.+-| +.||||+...|.+-|...|++|..+.
T Consensus 69 lq~~L~~lQ~~~~~-~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~ 121 (304)
T 3czq_A 69 LQIELVKVQFWMQA-TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT 121 (304)
T ss_dssp HHHHHHHHHHHHHH-HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC
T ss_pred HHHHHHHHHHHHHH-cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC
Confidence 34445555552222 22345778877 89999999999999988898886543
No 170
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=40.12 E-value=20 Score=34.03 Aligned_cols=29 Identities=38% Similarity=0.298 Sum_probs=22.6
Q ss_pred cEEEEcCCCC--hHHHHHHHHHHHHhC-CCCe
Q 015950 133 VLVGVTGSVG--KSTTKSMIALALESL-GVNV 161 (397)
Q Consensus 133 ~vI~VTGTnG--KTTT~~~l~~iL~~~-g~~v 161 (397)
.+|+|+|-|| |||+...|...+... +..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 4899999765 999999999988654 4443
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=39.84 E-value=75 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=17.4
Q ss_pred EEEcC--CCChHHHHHHHHHHHHhCCCC
Q 015950 135 VGVTG--SVGKSTTKSMIALALESLGVN 160 (397)
Q Consensus 135 I~VTG--TnGKTTT~~~l~~iL~~~g~~ 160 (397)
|-++| -.|||+.+..|++.....+..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 44555 258999999998876443444
No 172
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=39.53 E-value=32 Score=35.36 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=28.2
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeEE
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
.+..+|.+||. .||||++..|+..|.+.|+++..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 35678999994 89999999999999877877643
No 173
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=39.37 E-value=36 Score=34.29 Aligned_cols=30 Identities=40% Similarity=0.515 Sum_probs=24.6
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
..+|.+||. .||||++..|+..|...|.++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 467899885 679999999999987777665
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.53 E-value=19 Score=29.80 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=18.6
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.+|+++|. .||||.+.+|+.-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888884 58999999999877
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=38.24 E-value=19 Score=32.02 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.2
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+|+|+|-+ ||||+..+|+..|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999965 7999999999777
No 176
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.01 E-value=24 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.3
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+.|.++| -.||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45777888 579999999999888
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=37.76 E-value=19 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.3
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
.+.+|+|-| ||||+...|..+|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999977 5999999999998
No 178
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=37.73 E-value=30 Score=34.63 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 119 VNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 119 ~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
..+.+.|.....+..+|.+||- .||||+...|++-|.
T Consensus 382 ~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 382 KILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred HHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3444444211234568999994 699999999999994
No 179
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.86 E-value=26 Score=30.08 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.3
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..|.++|- .||||.+.+|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457888884 68999999999988
No 180
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=36.51 E-value=21 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
++|.++|- .||||++..|+.-|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 57888884 79999999999888
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=36.36 E-value=62 Score=26.54 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcC-CCCCcEEEEcCC--CChHHHHHHHHHHHH-hCCCCe
Q 015950 114 TLNSLVNMACYARNS-RFSGVLVGVTGS--VGKSTTKSMIALALE-SLGVNV 161 (397)
Q Consensus 114 ~~~aL~~la~~~~~p-~~~~~vI~VTGT--nGKTTT~~~l~~iL~-~~g~~v 161 (397)
-.+++..+-.+...- ..+...+++.|. .||||+...++..+. ..|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 344554444444320 122578999995 479999999999996 556554
No 182
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=36.33 E-value=25 Score=35.65 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=25.1
Q ss_pred CcEEEEc--CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+++.++ |-.||||++..++..|.+.|++|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 3455554 468999999999999998999984
No 183
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=35.92 E-value=21 Score=32.59 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHH-HHHHHHH
Q 015950 134 LVGVTGSVGKSTTK-SMIALAL 154 (397)
Q Consensus 134 vI~VTGTnGKTTT~-~~l~~iL 154 (397)
+|+|| |||||++. ..|..-+
T Consensus 161 ~IaIS-T~Gksp~lA~~ir~~i 181 (274)
T 1kyq_A 161 QILIS-TNGLSPRFGALVRDEI 181 (274)
T ss_dssp EEEEE-ESSSCHHHHHHHHHHH
T ss_pred EEEEE-CCCCCcHHHHHHHHHH
Confidence 89999 99998764 5555555
No 184
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=35.48 E-value=30 Score=30.44 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=24.1
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++.++| -.||||++.-|+..|. .|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~ 45 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVA 45 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEE
Confidence 45566665 7899999999999996 888873
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=35.46 E-value=24 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
.+..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999976 5999999999998
No 186
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=35.41 E-value=36 Score=33.77 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCC------CChHHHHHHHHHHHHhCCCCeEE
Q 015950 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVFQ 163 (397)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~~l~~iL~~~g~~v~~ 163 (397)
+.+.+.|-||+- -|||||+-=|.+.|...|.++..
T Consensus 40 ~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 345789999987 69999999999999999998753
No 187
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=34.47 E-value=75 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+....+..|-.+.+. ..+...+.+.|. .||||++.-|+..|
T Consensus 40 ~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 40 EFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 666667777775554 222346888885 79999999999888
No 188
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=33.72 E-value=36 Score=28.67 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=19.9
Q ss_pred CcEEEEcCC--CChHHHH-HHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGS--VGKSTTK-SMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~-~~l~~iL~~~g~~v~ 162 (397)
..++.+||. .||||.. .++.... ..|.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~ 35 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVA 35 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 357788887 5788886 4444444 6777764
No 189
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=33.65 E-value=37 Score=34.07 Aligned_cols=31 Identities=42% Similarity=0.489 Sum_probs=27.6
Q ss_pred CcEEEEcC----CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|.|-||| +-||.-|++-|..+|++.|++|.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 46788998 56999999999999999999983
No 190
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=33.57 E-value=31 Score=28.44 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=19.3
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.++|.|+|. .||||.+..|+.-|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457888884 68999999999887
No 191
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=33.41 E-value=25 Score=35.83 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCChHHH-HHHHHHHHHhCC
Q 015950 130 FSGVLVGVTGSVGKSTT-KSMIALALESLG 158 (397)
Q Consensus 130 ~~~~vI~VTGTnGKTTT-~~~l~~iL~~~g 158 (397)
...-|+|-.|| |||+| ++-++++++..+
T Consensus 23 ~~~lV~a~aGs-GKT~~l~~ri~~l~~~~~ 51 (647)
T 3lfu_A 23 SNLLVLAGAGS-GKTRVLVHRIAWLMSVEN 51 (647)
T ss_dssp SCEEEEECTTS-CHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCC-CHHHHHHHHHHHHHHhCC
Confidence 33456677776 88877 455777774434
No 192
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=33.41 E-value=25 Score=29.12 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.1
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
..+|.++| -.||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788888 479999999999877
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=33.09 E-value=46 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.+..++-+||. .||||...-+..-+...|.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 34678999998 6677766555555556788875
No 194
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=33.06 E-value=28 Score=33.18 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=21.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhC
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~ 157 (397)
..+|+|+|-| ||||+..+|...+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 4689999965 6999999999998654
No 195
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=31.16 E-value=16 Score=35.03 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeE
Q 015950 139 GSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 139 GTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
|-.||||++..++..|...|++|.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeE
Confidence 457899999999999988999984
No 196
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=31.05 E-value=1.1e+02 Score=26.85 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccc-hhhhhhcccCCCcEEEEeecCCCcchHHhhcccc-
Q 015950 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (397)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g-~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i- 207 (397)
.+.+++-|||..|-+-.-.-++..|.+.|.++.....+ .... ....+.......++.+++++.+...+++++.+-+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG--ERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS--GGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc--hHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 45679999998874334444444444889988643222 1110 0111111112225666666666665555544322
Q ss_pred ----CCcEEEEcCCChh
Q 015950 208 ----RPEIRVVLNVGDS 220 (397)
Q Consensus 208 ----~p~iaViTNi~~d 220 (397)
++|+ +|-|.+..
T Consensus 83 ~~~g~id~-li~~Ag~~ 98 (266)
T 3oig_A 83 EQVGVIHG-IAHCIAFA 98 (266)
T ss_dssp HHHSCCCE-EEECCCCC
T ss_pred HHhCCeeE-EEEccccc
Confidence 5664 55565543
No 197
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=30.73 E-value=1.2e+02 Score=25.48 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 115 LNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
..++..+..+...+ ..+.+.++|- .||||++..++..+...+.++.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34555555543331 3567888884 6799999999999877766653
No 198
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=30.27 E-value=34 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.3
Q ss_pred EEEEcC--CCChHHHHHHHHHHH
Q 015950 134 LVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.|+|+| -.||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 477888 468999999998777
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=30.25 E-value=52 Score=29.63 Aligned_cols=32 Identities=34% Similarity=0.299 Sum_probs=25.0
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhC-CCCeE
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESL-GVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~-g~~v~ 162 (397)
+..+++|+|-| ||||....|+..+... |.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 35689999965 8999999999888654 65663
No 200
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=29.74 E-value=36 Score=36.22 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCcEEEEcCC---CChHHHHHHHHHHHHhC-----CCCeE
Q 015950 131 SGVLVGVTGS---VGKSTTKSMIALALESL-----GVNVF 162 (397)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~~l~~iL~~~-----g~~v~ 162 (397)
..+.|-|+|| .|||+++.-|..+|++. |++|.
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~ 72 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLL 72 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEE
Confidence 3577889888 69999999999999888 88874
No 201
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=29.67 E-value=58 Score=28.61 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcc--cCCCcEEEEeecCCCcchHHhhccc
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARM 206 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~~~~~~~~~~~~~~~ 206 (397)
..+.+++-|||..|-+-.-.-++..|.+.|.++.....+... .....+.++ ..+.++.+++++.+...+++++.+-
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQ--GAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSS--HHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcch--hHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHH
Confidence 345689999998852223334444444789888643322111 101111111 1245677777777666555544332
Q ss_pred c-----CCcEEEEcCCCh
Q 015950 207 A-----RPEIRVVLNVGD 219 (397)
Q Consensus 207 i-----~p~iaViTNi~~ 219 (397)
+ ++|+ +|-|-+.
T Consensus 95 ~~~~~g~id~-li~nAg~ 111 (267)
T 3gdg_A 95 VVADFGQIDA-FIANAGA 111 (267)
T ss_dssp HHHHTSCCSE-EEECCCC
T ss_pred HHHHcCCCCE-EEECCCc
Confidence 2 5665 4455554
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=29.65 E-value=38 Score=30.06 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 135 I~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++=-|-.||||++--+++.|.+.|++|.
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4556789999998888888888999873
No 203
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=29.43 E-value=33 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.7
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+|+++|- .||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899995 58999999999988
No 204
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=29.05 E-value=43 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCCCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 128 SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 128 p~~~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
|..+.++|+|.|-+ ||||+...|...+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45567899999965 6999998887765
No 205
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=29.04 E-value=69 Score=28.01 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHH--HhCCCCeE
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALAL--ESLGVNVF 162 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL--~~~g~~v~ 162 (397)
..+..+..+||+-||.-|+.+|..+. ...|.+|.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34467899999944444444444444 46788874
No 206
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=28.75 E-value=28 Score=29.73 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.7
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
.+|+|+| -.||||++.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999 469999999998876
No 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=28.74 E-value=19 Score=32.53 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+++|.|-| ||||...+|..++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 35699999988 7999999988877
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=28.70 E-value=1e+02 Score=28.01 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHHhCCCCeE
Q 015950 117 SLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 117 aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~~~g~~v~ 162 (397)
++..+-.....|....+.+.++|- .||||++..++..+...+.++.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 333333333343323445667774 4799999999998866666653
No 209
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=28.58 E-value=84 Score=27.56 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcc--cCCCcEEEEeecCCCcchHHhhcccc
Q 015950 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMA 207 (397)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~--~~~~~~~VlE~~~~~~~~~~~~~~~i 207 (397)
.+.+++-|||..|..-=..+..+++ +.|.++.....+ . ........++ ..+.++.+++++.+...++.++.+-+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~--~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYH--E-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESC--H-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCC--H-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4567999999877544455556666 778887543221 0 0111111111 23356777888777765555544322
Q ss_pred -----CCcEEEEcCCCh
Q 015950 208 -----RPEIRVVLNVGD 219 (397)
Q Consensus 208 -----~p~iaViTNi~~ 219 (397)
++|+ +|-|-+.
T Consensus 96 ~~~~g~id~-li~~Ag~ 111 (266)
T 3o38_A 96 VEKAGRLDV-LVNNAGL 111 (266)
T ss_dssp HHHHSCCCE-EEECCCC
T ss_pred HHHhCCCcE-EEECCCc
Confidence 5665 4445553
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.12 E-value=36 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=20.9
Q ss_pred CCCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
.+..+++|.|-| ||||...+|...+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 446799999976 7999999998887
No 211
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.37 E-value=38 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..+++|.|-| ||||...+|..+ ..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 4689999987 699999999998 64
No 212
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=26.89 E-value=39 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.2
Q ss_pred cEEEEcCC--CChHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIAL 152 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~ 152 (397)
.+|.|+|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36788884 689999998887
No 213
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=26.86 E-value=22 Score=32.05 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.9
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
+..+++|.|-| ||||...+|..++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999988 79999999888773
No 214
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=26.35 E-value=48 Score=29.37 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=19.7
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
..+|+|+|- .||||++.+|+..|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999995 58999999999888
No 215
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=26.30 E-value=30 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~ 155 (397)
..+|.|.| ..||||.+..|+.-|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34677877 5699999999999883
No 216
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.23 E-value=35 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..+|+|+|- .||||+..+|+..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3568889885 58999999887653
No 217
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=26.07 E-value=1.1e+02 Score=26.47 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhhcCC-------CCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMACYARNSR-------FSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~~~~~p~-------~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..+.+.++..+...|. ...+-|-++|- .|||+++..++.-+
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66677777666554433 22345778884 67999999999877
No 218
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=25.44 E-value=2.5e+02 Score=22.71 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=31.1
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHhhcCCCCCcEEEEcCCCChHHHHHHHHHHHH
Q 015950 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (397)
Q Consensus 100 ~~~~i~v~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~~l~~iL~ 155 (397)
++|++.++ +- .+|+.+.+. ....-+++|| .+|.+-....+..+..
T Consensus 93 ~VP~~~v~-----sk----~eLG~a~Gk-~~~vs~vaI~-~~~~s~i~~~~~~~~~ 137 (144)
T 2jnb_A 93 NVPYVFVR-----SK----QALGRACGV-SRPVIACSVT-IKEGSQLKQQIQSIQQ 137 (144)
T ss_dssp CCCCEEES-----CS----HHHHHHHTC-SSCCSEEEEE-CCTTCTTHHHHHHHHH
T ss_pred CCCEEEEC-----CH----HHHHHHhCC-CCceEEEEEE-eCCcHHHHHHHHHHHH
Confidence 79999898 54 356766655 4445579998 5677777777776663
No 219
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=25.37 E-value=24 Score=31.87 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999987 79999999988873
No 220
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=25.31 E-value=25 Score=33.04 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.1
Q ss_pred EEEEcCC--CChHHHHHHHHHHH
Q 015950 134 LVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL 154 (397)
.|.++|- .|||+++..|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 3445553 49999999999988
No 221
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=25.15 E-value=89 Score=24.53 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=37.4
Q ss_pred CCcEEEEcC-CCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchh--hhhhcccCCCcEEEEeecC
Q 015950 131 SGVLVGVTG-SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA--LSLIGIDRAVDIAVLEMGM 194 (397)
Q Consensus 131 ~~~vI~VTG-TnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p--~~l~~~~~~~~~~VlE~~~ 194 (397)
+++.|+|-| |.-.++..+.+..-|.+.|+++.----....-.|.+ .++..+++ .|.+++=+..
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~ 68 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP 68 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH
Confidence 356788877 444566777777777788987642111112222332 24556677 8999987753
No 222
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.00 E-value=23 Score=31.69 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..+++
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999988 89999999988874
No 223
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=24.89 E-value=42 Score=31.83 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.-++|-|| .||||+..++...+...|.++.
T Consensus 38 ~~i~G~~G-~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 38 WTILAKPG-AGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp EEEECCTT-SSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEcCCC-CCHHHHHHHHHHHHHHCCCEEE
Confidence 44566666 6899998888776667777763
No 224
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.66 E-value=24 Score=31.28 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=19.9
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|.|-| ||||...+|..++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999987 7999999888777
No 225
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.63 E-value=25 Score=31.54 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.4
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+++|.|-| ||||...+|..++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999987 7999999988877
No 226
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=24.54 E-value=24 Score=31.63 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.7
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999988 79999999988873
No 227
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=24.52 E-value=60 Score=32.89 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.8
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCC-CCe
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLG-VNV 161 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g-~~v 161 (397)
..+|.+|| -.||||++..|+..|...| .++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 45789997 4679999999999996656 554
No 228
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=24.08 E-value=46 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=22.4
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
..+|+|+| -.||||++..|+.-| |+++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCcE
Confidence 46899999 568999999999988 5554
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.03 E-value=35 Score=29.78 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|.|-| ||||...+|..++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999987 7999999888776
No 230
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=23.96 E-value=51 Score=29.65 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.9
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+++|.|-| ||||...+|..++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999987 7999999888774
No 231
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=23.96 E-value=51 Score=28.58 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHH
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+..+|+||| -.||+|++.++...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 457999999 689999999998876
No 232
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=23.88 E-value=41 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|+|+| -.||||.+.+|+.-+ |..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 377888 469999999997655 55443
No 233
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=23.85 E-value=48 Score=29.41 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALA 153 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~i 153 (397)
..+++|.|-| ||||...+|..+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999987 799999988876
No 234
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=23.66 E-value=38 Score=29.23 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.2
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHH
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
+.+|.|+| -.||||.+..|+.-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45677777 369999999998866
No 235
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.62 E-value=46 Score=27.57 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=16.6
Q ss_pred cEEEEcCCC--ChHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIAL 152 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~ 152 (397)
.+|+++|.| ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 478899964 89999999976
No 236
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=23.45 E-value=34 Score=31.62 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=18.4
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
++++++|||-+ ||||....|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999965 6999887776654
No 237
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=23.45 E-value=2.2e+02 Score=25.20 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCCCcEEEEcCCCChHHHHHHHHHHHHhCCCCeEEcCCCCcCccchhhhhhcccCCCcEEEEeecCCCcchHHhhcccc-
Q 015950 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (397)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~VlE~~~~~~~~~~~~~~~i- 207 (397)
..+.+++-|||.+| -.-.-++..|.+.|.+|.....+. .........+ +.++.+++++.+....+.++.+-+
T Consensus 13 ~l~gk~vlVTGas~--gIG~~~a~~L~~~G~~V~~~~r~~---~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 13 SFAQRTVVITGANS--GLGAVTARELARRGATVIMAVRDT---RKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 45668999999885 344444555547898886432220 0111111112 345667777777766666655433
Q ss_pred CCcEEEEcCCCh
Q 015950 208 RPEIRVVLNVGD 219 (397)
Q Consensus 208 ~p~iaViTNi~~ 219 (397)
++|+ +|-|-+.
T Consensus 86 ~iD~-lv~nAg~ 96 (291)
T 3rd5_A 86 GADV-LINNAGI 96 (291)
T ss_dssp CEEE-EEECCCC
T ss_pred CCCE-EEECCcC
Confidence 4554 4555553
No 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=23.37 E-value=51 Score=29.13 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.1
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 133 VLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
.+++|.|-| ||||...+|+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999987 79999999988873
No 239
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=23.30 E-value=26 Score=31.19 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEe----ecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeE
Q 015950 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLV----SRSGIKIVNDAYNANPISTRAAIDLLKDIACNVV 388 (397)
Q Consensus 321 aAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~----~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv 388 (397)
.|..++..+|++..-+.+.- + .+|+...+. .+..+.|||| --.+-.++..+++.+++.....+
T Consensus 102 ~a~~lA~~L~~p~~~vrk~~---k-~~G~~~~i~g~~~~Gk~VLIVDD-vitTG~Tl~~a~~~L~~~Ga~vv 168 (234)
T 3m3h_A 102 HAAWVSDRMDLPMCYVRSKA---K-GHGKGNQIEGKAEKGQKVVVVED-LISTGGSAITCVEALREAGCEVL 168 (234)
T ss_dssp HHHHHHHHHTCCEEEEC-------------CCEESCCCTTCEEEEEEE-EESSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCEEEEEEee---c-cCCcceEEecccCCCCEEEEEec-ccchhHHHHHHHHHHHHCCCEEE
Confidence 35556677787643221110 1 123332222 2456899999 67899999999999998765443
No 240
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=23.26 E-value=2.9e+02 Score=24.65 Aligned_cols=69 Identities=13% Similarity=0.000 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC-CC-eeeEEee----cCCeEEEEecCCCCHHHHHHHHHHHhccCCCe
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPV-QM-RSELLVS----RSGIKIVNDAYNANPISTRAAIDLLKDIACNV 387 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~-~G-R~e~i~~----~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~r 387 (397)
+-.|+.-|...++|.+.|.+++.+-.+- .| -+|.+.. ++|+-||++|.-.|..-..+-++.+=...++.
T Consensus 52 Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~ 126 (249)
T 1kon_A 52 LRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGN 126 (249)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHSCC------CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhccCCCcccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCce
Confidence 4467888899999999999999987653 12 2333221 48899999988888877666665544333333
No 241
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.25 E-value=61 Score=29.95 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+..+++|.|-| ||||...+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 46799999965 6999999999999
No 242
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.20 E-value=27 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.6
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999988 69999999988873
No 243
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.18 E-value=61 Score=28.25 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
+.+|+|.|-| ||||...+|++-|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999966 6999999999777
No 244
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=23.17 E-value=3.2e+02 Score=24.19 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=48.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEee----cCCeEEEEecCCCCHHHHHHHHHHHhccCC-CeE
Q 015950 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS----RSGIKIVNDAYNANPISTRAAIDLLKDIAC-NVV 388 (397)
Q Consensus 319 ~laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~~----~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~-~rv 388 (397)
+-.|+.-|...++|.+.|.+++.+-.+-..-+|.+.. ++|+-||++|.-.|..-..+-++.+=...+ +.+
T Consensus 47 Lr~aI~kAk~~nmPkd~IerAIkk~~g~~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~l 121 (240)
T 1mw7_A 47 LRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASI 121 (240)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSTTCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeee
Confidence 5567788888999999999999887653112333221 488999999888888877666665544334 444
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.11 E-value=1.3e+02 Score=24.97 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEcCC--CChHHHHHHHHHHHH
Q 015950 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALE 155 (397)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~~l~~iL~ 155 (397)
+.+..+...... ....+.+.|+|- .||||++..++.-+.
T Consensus 30 ~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 30 HVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555554443 222357888885 589999999988884
No 246
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=23.06 E-value=34 Score=32.12 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=25.7
Q ss_pred cHHHHHHHHHH-HhhcCC------CCCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 113 NTLNSLVNMAC-YARNSR------FSGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 113 d~~~aL~~la~-~~~~p~------~~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..+.|.++.. ....|. ...+-|.++|- .|||+++..++..+
T Consensus 91 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 91 FAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 55555555544 222222 23456777774 68999999998766
No 247
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=23.03 E-value=28 Score=31.52 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..+++
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999987 69999999988873
No 248
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=22.65 E-value=80 Score=25.78 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=19.6
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEcCC--CChHHHHHHH
Q 015950 113 NTLNSLVNMAC-YARNSRFSGVLVGVTGS--VGKSTTKSMI 150 (397)
Q Consensus 113 d~~~aL~~la~-~~~~p~~~~~vI~VTGT--nGKTTT~~~l 150 (397)
..++.+..+.. ....+......|+|.|. .||||....+
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 34444444433 21222344567889994 8999876554
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=22.63 E-value=56 Score=28.94 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.7
Q ss_pred cEEEEcCC--CChHHHHHHHHHHH
Q 015950 133 VLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
++|.|+|- .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46777773 58999999998877
No 250
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.62 E-value=65 Score=27.46 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.4
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+..|+|-| ||||....|..+|-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4588899976 89999999999994
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=22.61 E-value=49 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=20.9
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
+..|.++| -.||||.+.+|+.-| |+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---GLAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CceEE
Confidence 34677777 379999999999988 45443
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=22.37 E-value=45 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred CCcEEEEcCC--CChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
...+|.++|- .||||++..|+..|
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999994 68999999999887
No 253
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.36 E-value=58 Score=28.66 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=19.2
Q ss_pred EEEEcCC--CChHHHHHHHHHHHHhCCCCe
Q 015950 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 134 vI~VTGT--nGKTTT~~~l~~iL~~~g~~v 161 (397)
-|-++|- .|||+++..++..+...+.+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~ 60 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPF 60 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCe
Confidence 3557774 489999999998774333343
No 254
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.22 E-value=67 Score=27.78 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.3
Q ss_pred CcEEEEcCC--CChHHHHHHHHHHH
Q 015950 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~~l~~iL 154 (397)
+..|.++|. .||||.+.+|+.-|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888884 79999999999988
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=21.91 E-value=94 Score=28.63 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.1
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
....+.+.|-+ ||||+..+|+..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34568889965 7999999999998
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=21.85 E-value=46 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
...++|.|.| ||||...+|+.++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999965 59999999999883
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.84 E-value=45 Score=28.22 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.4
Q ss_pred CCcEEEEcC--CCChHHHHHHHHHHH
Q 015950 131 SGVLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
..++|.|+| -.||||....|...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345677777 359999999998877
No 258
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=21.76 E-value=52 Score=32.65 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEcCCC--ChHHHHHHHHHHHHhC
Q 015950 133 VLVGVTGSV--GKSTTKSMIALALESL 157 (397)
Q Consensus 133 ~vI~VTGTn--GKTTT~~~l~~iL~~~ 157 (397)
.+++|.|-| ||||+..+|..++...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 689999987 8999999999999543
No 259
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=21.66 E-value=30 Score=30.91 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..+++
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999987 69999999988873
No 260
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.60 E-value=43 Score=30.16 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.1
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|.|-| ||||...+|..++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999988 7999999998877
No 261
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=21.38 E-value=48 Score=31.25 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.2
Q ss_pred cEEEEcC--CCChHHHHHHHHHHH
Q 015950 133 VLVGVTG--SVGKSTTKSMIALAL 154 (397)
Q Consensus 133 ~vI~VTG--TnGKTTT~~~l~~iL 154 (397)
++|+|+| ..||||.+..|+.-|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 4899999 469999999999887
No 262
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=21.03 E-value=88 Score=26.81 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.9
Q ss_pred CCcEEEEcCCC--ChHHHHHHHH
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIA 151 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~ 151 (397)
+..+++|.|-| ||||+..+|.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35789999976 7999999988
No 263
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=20.95 E-value=26 Score=31.39 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCeeeEEe----ecCCeEEEEecCCCCHHHHHHHHHHHhccCCCeE
Q 015950 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLV----SRSGIKIVNDAYNANPISTRAAIDLLKDIACNVV 388 (397)
Q Consensus 320 laAia~a~~lgi~~~~i~~~L~~~~~~~GR~e~i~----~~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv 388 (397)
..|..++..++++..-+. +-...+|....+. .++.+.|||| --.+-.++.++++.+++.....+
T Consensus 113 ~~A~~lA~~L~~p~~~vr----k~~k~~G~~~~ieg~~~~Gk~VLIVDD-vitTG~Tl~~a~~~L~~~Ga~vv 180 (243)
T 3dez_A 113 PHGAIIADKMNLPLAYIR----SKPKDHGAGNQIEGRVTKGQKMVIIED-LISTGGSVLDAVAAAQREGADVL 180 (243)
T ss_dssp HHHHHHHHHTTCCEEEEC----SSCC-----CCEESCCCTTCEEEEEEE-EESSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEE----EeeccCCceeEEEeccCCCCEEEEEEe-eccccHHHHHHHHHHHHCCCEEE
Confidence 345666777887643221 1111233333222 2456899999 67899999999999998765443
No 264
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=20.91 E-value=50 Score=28.20 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=22.5
Q ss_pred CcEEEEcC--CCChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~~l~~iL~~~g~~v 161 (397)
.++|.|+| -.||||+...|+.-| |++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 46899998 679999999999988 5654
No 265
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=20.61 E-value=37 Score=31.19 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=16.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSVGKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTnGKTTT~~~l~~iL 154 (397)
+-++|-.|| |||+++..++..+
T Consensus 49 vll~G~pGt-GKT~la~~la~~~ 70 (331)
T 2r44_A 49 ILLEGVPGL-AKTLSVNTLAKTM 70 (331)
T ss_dssp EEEESCCCH-HHHHHHHHHHHHT
T ss_pred EEEECCCCC-cHHHHHHHHHHHh
Confidence 334455555 6999999999887
No 266
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=20.52 E-value=22 Score=35.12 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCcEEEEcCCC--ChHHHHHHHHHHHHhCCC
Q 015950 131 SGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (397)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~~l~~iL~~~g~ 159 (397)
...+++|.|-| ||||...+|..++...+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 46789999965 799999999999864433
No 267
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=20.50 E-value=52 Score=29.04 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.5
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+++|.|-| ||||...+|..+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999987 69999999988874
No 268
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=20.46 E-value=73 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.7
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHhccCCCeEE
Q 015950 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNVVQ 389 (397)
Q Consensus 356 ~~~~~vi~Dsyahnp~s~~~~l~~l~~~~~~rv~ 389 (397)
++.+.++|| --.|-.++.++.+.|++....++.
T Consensus 83 gk~VllVDD-vitTG~Tl~~a~~~L~~~ga~~v~ 115 (153)
T 1vdm_A 83 DKRVVIVDD-VSDTGKTLEVVIEEVKKLGAKEIK 115 (153)
T ss_dssp TCEEEEEEE-EESSCHHHHHHHHHHHTTTBSEEE
T ss_pred CCEEEEEec-ccCChHHHHHHHHHHHHcCCCEEE
Confidence 356889999 567999999999999988766553
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=20.40 E-value=70 Score=30.97 Aligned_cols=30 Identities=37% Similarity=0.266 Sum_probs=22.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHhCCCCe
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~~g~~v 161 (397)
..+|+|+|-| |||||...|...+.....++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 4589999965 79999999999884433344
No 270
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=20.40 E-value=68 Score=27.56 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=19.4
Q ss_pred EEEEcC--CCChHHHHHHHHHHHHhCCCCeE
Q 015950 134 LVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (397)
Q Consensus 134 vI~VTG--TnGKTTT~~~l~~iL~~~g~~v~ 162 (397)
.|.++| -.||||.+.+|+.-| |+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 466666 368999999999888 45444
No 271
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.26 E-value=2.8e+02 Score=21.91 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=17.8
Q ss_pred cEEEEcCCCCh-HHHHHHHHHHHHhCCCCeE
Q 015950 133 VLVGVTGSVGK-STTKSMIALALESLGVNVF 162 (397)
Q Consensus 133 ~vI~VTGTnGK-TTT~~~l~~iL~~~g~~v~ 162 (397)
+.|+|-|...| +...+.+..-|.+.|+++.
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~ 53 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYDVY 53 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCEEE
Confidence 45778786644 2344444445658888753
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.23 E-value=45 Score=28.97 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.4
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL 154 (397)
..+++|.|-| ||||...+|..++
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999977 7999999988776
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.16 E-value=54 Score=29.47 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.0
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHHh
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~~ 156 (397)
..+++|.|-| ||||...+|..+++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5689999987 599999999988843
No 274
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.03 E-value=84 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.8
Q ss_pred CcEEEEcCCC--ChHHHHHHHHHHHH
Q 015950 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (397)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~~l~~iL~ 155 (397)
..+.+|+|-| ||||....|..+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4578888866 89999999998883
Done!