BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015951
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 143 EDSQRALQELLILVEPIDNAND-XXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNP 201
++ + AL+ L L E +DNA D +R +A ++G SQN
Sbjct: 39 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 98
Query: 202 LVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 245
+Q+QVL LGAL KL++++ + VKAL+ +S L+R AG
Sbjct: 99 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 143
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 241
+R +A ++G SQN +Q+QVL LGAL KL++++ + VKAL+ +S L+R
Sbjct: 96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155
Query: 242 NLAG 245
AG
Sbjct: 156 QEAG 159
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP----SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 63 HDHADYGFPSCEGKFNWRVIKEKRDAXYVSRLNAIXYQNNLTKSHIEI 110
>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh)
Family Protein 16 From Mycobacterium Smegmatis Str. Mc2
155
Length = 269
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 51 PRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQD 96
PR A + + A+ + DE DG S +W IAK +ET QD
Sbjct: 28 PRAAAVPNQTAASYVF--ADEFDGPAGSAPSAAKWTIAKARETIQD 71
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 288 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 340
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 341 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 388
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 278 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 330
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 331 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 378
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 79 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 124
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 80 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 125
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 63 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 108
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 81 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 126
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 80 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 125
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 80 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 125
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 302 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 354
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 302 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 354
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
Polymerase B1 From The Archaeon Sulfolobus Solfataricus
Length = 847
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 98 QRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI-DDLNNSTLSLEDSQRALQEL---L 153
+R +P +KK E+KELM + +P+D + I+ I D + S L++ L EL +
Sbjct: 685 KRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGYNLDELAFKV 744
Query: 154 ILVEPID 160
+L +P+D
Sbjct: 745 MLSKPLD 751
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 80 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 125
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 302 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 354
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 80 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 125
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 69 HDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSP---SELKKRQMEI 112
HD D GF S +G W + K K A V RL+ + L K +EI
Sbjct: 63 HDHADYGFPSCEGKFNWRVIKEKRDAY-VSRLNAIYQNNLTKSHIEI 108
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 321 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 373
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q+ A AI N T E +V CG+
Sbjct: 374 -VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 286 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 338
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 339 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 386
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 252 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 304
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 258 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 310
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 311 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 358
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 247 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 299
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 300 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 347
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 252 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 304
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 252 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 304
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 251 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 303
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 304 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 351
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 251 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 303
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 304 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 351
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238
+H D ++ S W + + + V++ G + +L+K++ ++ + AL + ++
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 239 IRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297
+ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 247 VTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV---- 299
Query: 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 346
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 300 -VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 347
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 189 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSS 237
SAW+L + N L + V++ GA+ ++++ S F E+AV AL ++
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 189 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSS 237
SAW+L + N L + V++ GA+ ++++ S F E+AV AL ++
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 133
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+
Sbjct: 311 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL 370
Query: 291 HKVEPPL--FRDRFFLKSVVDLTASADL 316
HKV P L F DR ++ +A+L
Sbjct: 371 HKVSPSLKGFLDRLLVRDPAQRATAAEL 398
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 181 PDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVS 236
P+ I + + W L AS N +Q V++ GAL L++++ S ++EA+ AL ++
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 237 SLIRNNLAGQEMF--YVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 293
S G E ++AG L L +L SS ++ ++A+ + ++A E + V
Sbjct: 125 S------GGNEQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 294 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353
D L ++V L +S + + ++AL A+ N+ + +K+ L+ LE+L
Sbjct: 177 -----IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK-LEQL 230
Query: 354 RQQLQEVMLEEDQR 367
+ E + +E Q
Sbjct: 231 QSHENEKIQKEAQE 244
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 233 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 191 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 250
Query: 293 VEPPL--FRDRFFLKSVVDLTASADL 316
V P L F DR ++ +A+L
Sbjct: 251 VSPSLKGFLDRLLVRDPAQRATAAEL 276
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 233 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 193 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 252
Query: 293 VEPPL--FRDRFFLKSVVDLTASADL 316
V P L F DR ++ +A+L
Sbjct: 253 VSPSLKGFLDRLLVRDPAQRATAAEL 278
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+
Sbjct: 234 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL 293
Query: 291 HKVEPPL--FRDRFFLKSVVDLTASADL 316
HKV P L F DR ++ +A+L
Sbjct: 294 HKVSPSLKGFLDRLLVRDPAQRATAAEL 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,479,968
Number of Sequences: 62578
Number of extensions: 338529
Number of successful extensions: 1126
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 105
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)